Query 000704
Match_columns 1342
No_of_seqs 691 out of 6204
Neff 9.9
Searched_HMMs 46136
Date Mon Apr 1 22:11:32 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.1E-86 1.8E-90 812.6 43.2 627 5-671 11-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.8E-62 3.9E-67 645.1 58.8 685 137-982 182-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.1E-41 6.7E-46 381.8 20.6 274 144-421 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.7E-30 3.8E-35 345.1 30.2 514 489-1197 70-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.7E-30 3.6E-35 345.3 28.6 517 510-1246 69-588 (968)
6 KOG0618 Serine/threonine phosp 99.9 3.6E-24 7.8E-29 248.7 -6.0 141 495-638 5-147 (1081)
7 PLN03210 Resistant to P. syrin 99.8 2.3E-20 5E-25 247.0 22.2 293 911-1277 610-910 (1153)
8 KOG4194 Membrane glycoprotein 99.8 1.2E-20 2.5E-25 207.8 10.1 153 509-674 77-232 (873)
9 KOG0472 Leucine-rich repeat pr 99.8 8.9E-23 1.9E-27 214.8 -12.5 127 1075-1217 415-541 (565)
10 KOG4194 Membrane glycoprotein 99.8 4.2E-20 9.2E-25 203.5 7.1 133 1071-1212 316-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.8 2.6E-22 5.7E-27 211.3 -12.2 171 493-679 50-222 (565)
12 KOG0618 Serine/threonine phosp 99.8 9.4E-21 2E-25 220.5 -1.8 462 490-1164 23-489 (1081)
13 KOG0444 Cytoskeletal regulator 99.7 1.4E-19 3.1E-24 200.0 -4.8 363 512-1016 9-380 (1255)
14 KOG0444 Cytoskeletal regulator 99.7 9E-19 2E-23 193.8 -3.4 194 486-691 53-251 (1255)
15 KOG0617 Ras suppressor protein 99.5 3.7E-16 8.1E-21 145.8 -4.5 166 501-682 24-192 (264)
16 KOG0617 Ras suppressor protein 99.4 6.9E-15 1.5E-19 137.4 -5.4 151 487-641 32-186 (264)
17 KOG4237 Extracellular matrix p 99.3 3.6E-14 7.7E-19 150.6 -4.1 121 513-635 70-195 (498)
18 PRK04841 transcriptional regul 99.3 1E-10 2.2E-15 155.5 22.9 293 138-467 13-332 (903)
19 PRK15387 E3 ubiquitin-protein 99.3 1.5E-11 3.2E-16 150.5 12.2 252 914-1269 203-454 (788)
20 PRK15387 E3 ubiquitin-protein 99.2 1.2E-10 2.5E-15 142.8 16.4 155 491-679 204-358 (788)
21 COG2909 MalT ATP-dependent tra 99.2 4.2E-10 9.1E-15 132.8 19.9 287 149-469 25-340 (894)
22 PRK15370 E3 ubiquitin-protein 99.2 6.2E-11 1.3E-15 146.4 13.6 137 490-641 180-317 (754)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.5E-11 3.2E-16 154.2 8.1 129 532-674 520-653 (889)
24 KOG4341 F-box protein containi 99.2 3.2E-13 7E-18 145.0 -6.0 144 1121-1277 293-443 (483)
25 KOG4341 F-box protein containi 99.1 1.5E-12 3.2E-17 140.0 -4.9 274 808-1135 162-440 (483)
26 TIGR03015 pepcterm_ATPase puta 99.1 6.3E-09 1.4E-13 116.4 22.8 182 158-342 41-242 (269)
27 PRK15370 E3 ubiquitin-protein 99.1 5.6E-10 1.2E-14 138.1 13.7 165 486-679 197-362 (754)
28 PRK00411 cdc6 cell division co 99.1 2.4E-08 5.1E-13 118.5 25.3 240 138-393 29-303 (394)
29 PF01637 Arch_ATPase: Archaeal 98.9 2.2E-09 4.7E-14 117.8 9.9 193 141-337 1-233 (234)
30 PF05729 NACHT: NACHT domain 98.9 5.1E-09 1.1E-13 107.7 11.8 143 161-308 1-163 (166)
31 PF14580 LRR_9: Leucine-rich r 98.9 1.3E-09 2.7E-14 109.3 6.0 109 556-676 17-126 (175)
32 KOG4237 Extracellular matrix p 98.9 1.1E-10 2.3E-15 124.7 -3.1 132 477-610 57-195 (498)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.7E-14 109.3 3.6 130 532-671 16-148 (175)
34 TIGR02928 orc1/cdc6 family rep 98.9 1.2E-06 2.7E-11 102.7 29.4 196 140-335 16-243 (365)
35 KOG1259 Nischarin, modulator o 98.9 3.4E-10 7.5E-15 115.9 -0.8 137 532-681 281-417 (490)
36 KOG0532 Leucine-rich repeat (L 98.8 3.2E-10 7E-15 126.6 -2.8 186 490-693 77-265 (722)
37 TIGR00635 ruvB Holliday juncti 98.8 4.1E-07 9E-12 103.6 21.4 273 138-447 3-289 (305)
38 PRK00080 ruvB Holliday junctio 98.8 4.3E-07 9.3E-12 104.0 21.4 276 136-447 22-310 (328)
39 KOG0532 Leucine-rich repeat (L 98.7 9.5E-10 2.1E-14 123.0 -4.2 156 509-682 74-230 (722)
40 cd00116 LRR_RI Leucine-rich re 98.7 4.4E-09 9.6E-14 121.5 0.4 138 529-675 17-177 (319)
41 cd00116 LRR_RI Leucine-rich re 98.7 7.7E-09 1.7E-13 119.5 2.2 157 509-674 50-232 (319)
42 KOG3207 Beta-tubulin folding c 98.6 5.2E-09 1.1E-13 113.8 0.3 214 1069-1293 118-333 (505)
43 PRK13342 recombination factor 98.6 4.8E-07 1E-11 106.7 15.5 178 138-341 11-199 (413)
44 COG2256 MGS1 ATPase related to 98.6 5.4E-07 1.2E-11 98.2 13.8 254 136-420 21-302 (436)
45 PTZ00112 origin recognition co 98.6 3.4E-06 7.3E-11 101.1 20.4 204 139-343 755-987 (1164)
46 KOG1259 Nischarin, modulator o 98.6 7.6E-09 1.7E-13 106.3 -1.6 104 534-640 306-411 (490)
47 PRK06893 DNA replication initi 98.6 6.8E-07 1.5E-11 96.1 13.4 151 159-338 38-203 (229)
48 PF13173 AAA_14: AAA domain 98.4 3E-07 6.5E-12 89.0 6.5 121 160-300 2-127 (128)
49 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 110.9 5.6 173 489-678 117-292 (394)
50 PRK05564 DNA polymerase III su 98.4 7.7E-06 1.7E-10 93.0 16.6 177 139-337 4-189 (313)
51 PRK14961 DNA polymerase III su 98.4 1E-05 2.2E-10 93.7 17.3 177 138-336 15-218 (363)
52 PTZ00202 tuzin; Provisional 98.3 1.6E-05 3.5E-10 88.5 17.4 164 135-308 258-434 (550)
53 PRK14949 DNA polymerase III su 98.3 5.3E-06 1.1E-10 101.5 14.7 185 137-339 14-221 (944)
54 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.4E-06 9.6E-11 90.7 13.0 168 143-339 21-202 (226)
55 KOG2028 ATPase related to the 98.3 7.1E-06 1.5E-10 87.3 13.5 174 138-333 137-331 (554)
56 PRK12323 DNA polymerase III su 98.3 6.8E-06 1.5E-10 97.2 14.6 180 137-338 14-225 (700)
57 PRK12402 replication factor C 98.3 8.5E-06 1.9E-10 94.6 15.7 198 138-337 14-225 (337)
58 PRK07003 DNA polymerase III su 98.3 1.1E-05 2.3E-10 96.9 15.6 179 137-337 14-220 (830)
59 cd01128 rho_factor Transcripti 98.3 1.3E-06 2.7E-11 93.9 7.2 92 159-251 15-115 (249)
60 COG1474 CDC6 Cdc6-related prot 98.3 6.1E-05 1.3E-09 85.9 21.1 200 141-341 19-241 (366)
61 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.5E-10 98.9 16.1 171 138-309 153-367 (615)
62 PRK06645 DNA polymerase III su 98.3 1.8E-05 3.9E-10 93.8 16.8 177 137-335 19-226 (507)
63 PRK09376 rho transcription ter 98.3 2.3E-06 5E-11 95.0 8.5 90 161-251 170-268 (416)
64 PRK14960 DNA polymerase III su 98.2 1.5E-05 3.3E-10 94.6 15.2 179 137-337 13-218 (702)
65 COG4886 Leucine-rich repeat (L 98.2 8.5E-07 1.8E-11 105.4 5.0 157 508-680 114-272 (394)
66 PRK14957 DNA polymerase III su 98.2 1.6E-05 3.4E-10 94.8 15.5 185 137-339 14-222 (546)
67 PRK14963 DNA polymerase III su 98.2 2.5E-05 5.4E-10 93.2 17.2 190 137-335 12-214 (504)
68 PF13401 AAA_22: AAA domain; P 98.2 4.1E-06 8.8E-11 82.0 9.0 116 159-276 3-125 (131)
69 PLN03025 replication factor C 98.2 1.6E-05 3.5E-10 90.5 15.1 183 137-335 11-197 (319)
70 PF05496 RuvB_N: Holliday junc 98.2 1.2E-05 2.5E-10 82.4 12.2 175 135-339 20-222 (233)
71 PRK14956 DNA polymerase III su 98.2 1.5E-05 3.3E-10 92.2 14.1 195 137-335 16-219 (484)
72 COG3899 Predicted ATPase [Gene 98.2 6.8E-05 1.5E-09 95.6 21.1 260 141-412 2-333 (849)
73 PRK04195 replication factor C 98.2 6.1E-05 1.3E-09 90.9 19.6 184 137-343 12-207 (482)
74 PRK14962 DNA polymerase III su 98.2 3.2E-05 6.9E-10 91.5 16.7 188 137-342 12-223 (472)
75 cd00009 AAA The AAA+ (ATPases 98.2 9.3E-06 2E-10 81.6 10.8 122 143-278 2-131 (151)
76 PRK15386 type III secretion pr 98.2 3E-06 6.5E-11 95.4 7.5 137 1123-1299 73-213 (426)
77 PRK00440 rfc replication facto 98.2 3.3E-05 7.2E-10 89.0 16.4 182 137-336 15-201 (319)
78 PRK15386 type III secretion pr 98.2 3E-06 6.5E-11 95.4 6.8 141 1118-1297 48-188 (426)
79 PF13855 LRR_8: Leucine rich r 98.1 2E-06 4.3E-11 70.6 3.5 58 581-639 2-60 (61)
80 PRK14951 DNA polymerase III su 98.1 4.3E-05 9.3E-10 92.4 16.2 196 137-337 14-224 (618)
81 PLN03150 hypothetical protein; 98.1 6.2E-06 1.3E-10 102.5 9.1 104 536-640 419-527 (623)
82 PRK05896 DNA polymerase III su 98.1 4.3E-05 9.3E-10 91.1 15.3 196 137-340 14-223 (605)
83 PLN03150 hypothetical protein; 98.1 5.1E-06 1.1E-10 103.2 7.9 82 559-641 419-503 (623)
84 PRK13341 recombination factor 98.1 2.8E-05 6E-10 96.4 14.0 170 137-333 26-212 (725)
85 PRK08727 hypothetical protein; 98.1 4.4E-05 9.5E-10 82.4 13.9 159 148-335 29-201 (233)
86 PRK07994 DNA polymerase III su 98.1 3.2E-05 6.9E-10 93.7 14.0 194 137-338 14-220 (647)
87 TIGR00678 holB DNA polymerase 98.1 5.6E-05 1.2E-09 79.0 14.3 160 150-334 3-187 (188)
88 PRK07940 DNA polymerase III su 98.1 8.1E-05 1.8E-09 85.9 16.5 173 138-338 4-213 (394)
89 PF13855 LRR_8: Leucine rich r 98.1 3.5E-06 7.7E-11 69.1 3.9 57 511-568 2-59 (61)
90 PRK14964 DNA polymerase III su 98.1 7E-05 1.5E-09 88.0 16.0 181 137-335 11-214 (491)
91 PRK08691 DNA polymerase III su 98.1 4E-05 8.8E-10 92.1 14.0 178 137-336 14-218 (709)
92 PRK09112 DNA polymerase III su 98.1 8.3E-05 1.8E-09 84.6 15.9 199 135-339 19-241 (351)
93 PRK14958 DNA polymerase III su 98.0 5.1E-05 1.1E-09 90.8 14.8 182 137-336 14-218 (509)
94 KOG3207 Beta-tubulin folding c 98.0 8.4E-07 1.8E-11 97.1 -0.4 184 488-677 121-315 (505)
95 TIGR02397 dnaX_nterm DNA polym 98.0 0.0003 6.6E-09 82.3 21.1 184 137-339 12-219 (355)
96 PRK07471 DNA polymerase III su 98.0 0.00013 2.8E-09 83.5 17.2 194 137-338 17-238 (365)
97 PRK14969 DNA polymerase III su 98.0 0.00016 3.4E-09 87.4 18.5 184 137-338 14-221 (527)
98 PRK14955 DNA polymerase III su 98.0 5.9E-05 1.3E-09 88.5 14.4 200 137-337 14-227 (397)
99 TIGR00767 rho transcription te 98.0 2.3E-05 5E-10 87.9 9.9 91 160-251 168-267 (415)
100 PRK08084 DNA replication initi 98.0 7.2E-05 1.6E-09 80.8 13.5 163 146-337 31-208 (235)
101 COG3903 Predicted ATPase [Gene 98.0 2.6E-05 5.7E-10 86.2 10.0 289 159-469 13-316 (414)
102 PRK09087 hypothetical protein; 98.0 7.2E-05 1.6E-09 79.8 13.0 139 159-337 43-194 (226)
103 KOG1947 Leucine rich repeat pr 98.0 9.6E-07 2.1E-11 108.8 -2.1 118 939-1082 187-305 (482)
104 PF13191 AAA_16: AAA ATPase do 98.0 2.4E-05 5.3E-10 81.9 8.8 47 141-187 2-51 (185)
105 PRK07764 DNA polymerase III su 97.9 0.00023 5.1E-09 89.5 18.3 177 137-335 13-218 (824)
106 PRK14954 DNA polymerase III su 97.9 0.00014 3E-09 88.4 15.6 196 137-333 14-223 (620)
107 TIGR01242 26Sp45 26S proteasom 97.9 9.2E-05 2E-09 86.2 13.5 176 135-332 118-328 (364)
108 PRK14970 DNA polymerase III su 97.9 0.00024 5.2E-09 83.1 16.6 180 137-334 15-205 (367)
109 PRK14971 DNA polymerase III su 97.9 0.00027 5.9E-09 86.6 17.3 180 138-336 16-220 (614)
110 PRK14959 DNA polymerase III su 97.9 0.00018 3.8E-09 86.5 15.2 198 137-342 14-225 (624)
111 PRK09111 DNA polymerase III su 97.9 0.00018 3.9E-09 87.4 15.5 197 136-337 21-232 (598)
112 PF12799 LRR_4: Leucine Rich r 97.9 1.5E-05 3.2E-10 59.5 3.8 40 536-575 2-41 (44)
113 KOG2120 SCF ubiquitin ligase, 97.9 8.1E-07 1.7E-11 92.0 -4.0 88 1073-1165 186-274 (419)
114 PRK07133 DNA polymerase III su 97.9 0.00024 5.3E-09 86.6 16.0 179 137-337 16-218 (725)
115 PF14516 AAA_35: AAA-like doma 97.8 0.0017 3.6E-08 74.1 21.5 200 138-345 10-246 (331)
116 PRK14952 DNA polymerase III su 97.8 0.00033 7.2E-09 84.6 16.4 184 137-342 11-224 (584)
117 PRK08451 DNA polymerase III su 97.8 0.0004 8.7E-09 82.5 16.5 183 137-338 12-218 (535)
118 KOG2227 Pre-initiation complex 97.8 0.0011 2.3E-08 74.4 18.3 205 137-341 148-375 (529)
119 KOG1859 Leucine-rich repeat pr 97.8 1.7E-06 3.6E-11 100.1 -3.7 100 560-675 166-266 (1096)
120 PRK14950 DNA polymerase III su 97.8 0.00052 1.1E-08 84.6 17.2 193 138-337 15-220 (585)
121 PF05621 TniB: Bacterial TniB 97.8 0.00081 1.8E-08 72.7 16.3 189 145-333 43-256 (302)
122 KOG2120 SCF ubiquitin ligase, 97.8 1.7E-06 3.6E-11 89.7 -3.8 114 998-1134 234-351 (419)
123 PRK14953 DNA polymerase III su 97.8 0.00076 1.6E-08 80.4 17.8 181 137-339 14-221 (486)
124 PRK11331 5-methylcytosine-spec 97.8 8E-05 1.7E-09 85.2 9.0 107 140-251 176-284 (459)
125 PF00308 Bac_DnaA: Bacterial d 97.7 0.00013 2.9E-09 77.5 10.2 159 160-335 34-205 (219)
126 PRK06305 DNA polymerase III su 97.7 0.00063 1.4E-08 80.6 16.6 183 137-338 15-223 (451)
127 PRK14087 dnaA chromosomal repl 97.7 0.00068 1.5E-08 80.3 16.9 164 161-339 142-320 (450)
128 PRK03992 proteasome-activating 97.7 0.00022 4.7E-09 83.3 12.3 172 137-332 129-337 (389)
129 KOG1947 Leucine rich repeat pr 97.7 6.1E-06 1.3E-10 101.7 -1.0 64 1070-1134 241-308 (482)
130 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.7E-10 57.2 3.6 39 581-620 2-40 (44)
131 PRK05642 DNA replication initi 97.7 0.00032 7E-09 75.6 12.1 150 161-338 46-208 (234)
132 KOG1859 Leucine-rich repeat pr 97.7 6.3E-07 1.4E-11 103.4 -9.2 131 535-679 164-295 (1096)
133 KOG0989 Replication factor C, 97.7 0.00047 1E-08 72.9 12.4 183 136-333 33-225 (346)
134 KOG0531 Protein phosphatase 1, 97.7 5.1E-06 1.1E-10 98.7 -2.5 106 532-640 92-198 (414)
135 PHA02544 44 clamp loader, smal 97.6 0.00031 6.8E-09 80.5 12.1 147 137-306 19-171 (316)
136 KOG0531 Protein phosphatase 1, 97.6 1E-05 2.2E-10 96.2 -0.5 102 535-640 72-174 (414)
137 TIGR02881 spore_V_K stage V sp 97.6 0.00044 9.5E-09 76.4 12.5 135 159-309 41-192 (261)
138 COG2255 RuvB Holliday junction 97.6 0.0078 1.7E-07 63.3 19.9 173 135-337 22-222 (332)
139 PRK14948 DNA polymerase III su 97.6 0.0015 3.3E-08 80.1 17.7 196 137-338 14-222 (620)
140 PRK06647 DNA polymerase III su 97.6 0.0014 3E-08 79.6 17.0 193 137-337 14-219 (563)
141 PRK08903 DnaA regulatory inact 97.6 0.00059 1.3E-08 73.8 12.6 164 147-342 28-203 (227)
142 CHL00181 cbbX CbbX; Provisiona 97.6 0.0013 2.8E-08 73.0 15.3 132 161-308 60-209 (287)
143 COG1373 Predicted ATPase (AAA+ 97.6 0.0023 4.9E-08 74.7 17.9 136 143-302 21-161 (398)
144 TIGR03689 pup_AAA proteasome A 97.6 0.00092 2E-08 79.1 14.7 162 136-310 179-380 (512)
145 TIGR00362 DnaA chromosomal rep 97.6 0.0012 2.5E-08 78.4 15.8 157 161-334 137-306 (405)
146 TIGR02639 ClpA ATP-dependent C 97.6 0.00067 1.5E-08 86.2 14.5 156 138-308 181-358 (731)
147 KOG2982 Uncharacterized conser 97.5 3.6E-05 7.8E-10 80.1 2.2 193 1097-1305 70-268 (418)
148 PRK14965 DNA polymerase III su 97.5 0.00092 2E-08 81.9 14.6 194 137-338 14-221 (576)
149 PRK07399 DNA polymerase III su 97.5 0.0022 4.7E-08 72.1 16.0 196 138-337 3-220 (314)
150 KOG3665 ZYG-1-like serine/thre 97.5 4.6E-05 1E-09 94.1 2.9 82 508-590 146-230 (699)
151 TIGR02880 cbbX_cfxQ probable R 97.5 0.0017 3.6E-08 72.2 14.9 131 162-308 60-208 (284)
152 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0011 2.4E-08 84.8 15.1 157 137-308 185-363 (852)
153 CHL00095 clpC Clp protease ATP 97.5 0.001 2.2E-08 85.7 14.8 158 138-308 178-354 (821)
154 KOG1909 Ran GTPase-activating 97.5 1.2E-05 2.6E-10 85.9 -2.3 38 577-614 89-131 (382)
155 PRK05563 DNA polymerase III su 97.5 0.003 6.5E-08 77.1 17.5 192 137-336 14-218 (559)
156 PRK00149 dnaA chromosomal repl 97.4 0.002 4.4E-08 77.3 15.3 157 161-335 149-319 (450)
157 PTZ00454 26S protease regulato 97.4 0.0017 3.8E-08 75.3 13.9 175 134-332 140-351 (398)
158 KOG3665 ZYG-1-like serine/thre 97.4 8.7E-05 1.9E-09 91.7 3.2 131 511-641 123-263 (699)
159 PRK14086 dnaA chromosomal repl 97.4 0.0036 7.7E-08 75.1 16.0 155 161-333 315-483 (617)
160 PRK05707 DNA polymerase III su 97.4 0.0032 7E-08 71.1 14.9 153 160-338 22-203 (328)
161 KOG2543 Origin recognition com 97.4 0.0012 2.6E-08 72.0 10.7 162 139-306 6-191 (438)
162 PRK06620 hypothetical protein; 97.3 0.00088 1.9E-08 70.9 9.4 134 161-335 45-186 (214)
163 PRK14088 dnaA chromosomal repl 97.3 0.0024 5.1E-08 75.7 13.8 157 161-334 131-301 (440)
164 PTZ00361 26 proteosome regulat 97.3 0.0021 4.7E-08 74.9 13.1 154 136-309 180-368 (438)
165 PRK10536 hypothetical protein; 97.3 0.00091 2E-08 70.8 8.9 56 137-194 53-108 (262)
166 PF05673 DUF815: Protein of un 97.3 0.011 2.3E-07 62.0 16.2 121 135-281 23-155 (249)
167 CHL00176 ftsH cell division pr 97.2 0.0036 7.7E-08 77.0 14.7 169 140-330 184-386 (638)
168 smart00382 AAA ATPases associa 97.2 0.00099 2.1E-08 66.2 8.0 90 161-253 3-92 (148)
169 TIGR00602 rad24 checkpoint pro 97.2 0.0013 2.7E-08 80.1 10.0 50 136-185 81-135 (637)
170 PRK08118 topology modulation p 97.2 0.00021 4.5E-09 72.5 2.7 35 161-195 2-37 (167)
171 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0052 1.1E-07 79.5 15.7 157 138-308 172-349 (852)
172 PRK10865 protein disaggregatio 97.1 0.0038 8.2E-08 80.3 13.8 156 138-308 177-354 (857)
173 PRK11034 clpA ATP-dependent Cl 97.1 0.0014 3.1E-08 81.9 9.7 158 138-308 185-362 (758)
174 PF00004 AAA: ATPase family as 97.1 0.0015 3.2E-08 63.9 7.9 69 163-251 1-70 (132)
175 KOG1909 Ran GTPase-activating 97.1 0.00017 3.7E-09 77.4 1.3 134 534-675 156-310 (382)
176 PRK08058 DNA polymerase III su 97.1 0.0089 1.9E-07 68.2 15.0 145 141-306 7-180 (329)
177 TIGR01241 FtsH_fam ATP-depende 97.1 0.0046 9.9E-08 75.2 13.5 175 136-332 52-260 (495)
178 PRK12422 chromosomal replicati 97.1 0.0061 1.3E-07 72.0 14.0 151 161-330 142-305 (445)
179 KOG0991 Replication factor C, 97.1 0.0076 1.6E-07 61.0 12.1 49 137-185 25-73 (333)
180 PF13177 DNA_pol3_delta2: DNA 97.0 0.0064 1.4E-07 61.3 11.9 137 143-296 1-162 (162)
181 PRK12608 transcription termina 97.0 0.0037 8.1E-08 70.2 11.0 103 148-251 120-232 (380)
182 PRK08769 DNA polymerase III su 97.0 0.015 3.3E-07 65.0 15.9 174 146-338 11-208 (319)
183 KOG0741 AAA+-type ATPase [Post 97.0 0.012 2.6E-07 66.8 14.7 146 158-328 536-704 (744)
184 COG1222 RPT1 ATP-dependent 26S 97.0 0.015 3.3E-07 63.3 14.9 187 133-343 145-372 (406)
185 PRK06090 DNA polymerase III su 97.0 0.038 8.2E-07 61.8 18.4 161 147-338 11-201 (319)
186 COG0466 Lon ATP-dependent Lon 97.0 0.0019 4E-08 76.5 8.0 155 141-308 325-508 (782)
187 COG0593 DnaA ATPase involved i 96.9 0.015 3.4E-07 66.2 15.0 132 159-308 112-257 (408)
188 PRK08116 hypothetical protein; 96.9 0.0021 4.7E-08 70.6 7.8 102 161-277 115-221 (268)
189 KOG2982 Uncharacterized conser 96.9 0.00042 9.1E-09 72.4 1.9 103 536-638 46-156 (418)
190 KOG0731 AAA+-type ATPase conta 96.9 0.0072 1.6E-07 73.4 12.4 175 140-335 315-521 (774)
191 PRK06871 DNA polymerase III su 96.9 0.026 5.6E-07 63.3 16.0 176 147-335 10-200 (325)
192 KOG1644 U2-associated snRNP A' 96.9 0.0016 3.5E-08 64.7 5.5 63 531-593 60-126 (233)
193 PF04665 Pox_A32: Poxvirus A32 96.8 0.0025 5.5E-08 67.3 7.2 35 162-198 15-49 (241)
194 COG1223 Predicted ATPase (AAA+ 96.8 0.015 3.2E-07 60.0 11.6 170 138-331 120-318 (368)
195 KOG4579 Leucine-rich repeat (L 96.8 8.3E-05 1.8E-09 68.4 -3.9 80 556-637 51-132 (177)
196 PRK07261 topology modulation p 96.8 0.0037 8.1E-08 63.8 7.5 34 162-195 2-36 (171)
197 KOG2004 Mitochondrial ATP-depe 96.7 0.063 1.4E-06 63.7 17.6 156 140-308 412-596 (906)
198 KOG0733 Nuclear AAA ATPase (VC 96.7 0.026 5.7E-07 65.5 14.2 152 137-308 188-374 (802)
199 PHA00729 NTP-binding motif con 96.6 0.0099 2.1E-07 62.1 9.7 35 150-184 7-41 (226)
200 COG3267 ExeA Type II secretory 96.6 0.073 1.6E-06 55.6 15.7 189 148-341 40-248 (269)
201 TIGR00763 lon ATP-dependent pr 96.6 0.045 9.7E-07 70.3 17.1 46 140-185 321-372 (775)
202 KOG1644 U2-associated snRNP A' 96.6 0.0036 7.9E-08 62.3 5.5 103 560-672 44-149 (233)
203 PRK10865 protein disaggregatio 96.6 0.049 1.1E-06 70.3 17.3 46 140-185 569-623 (857)
204 PRK06964 DNA polymerase III su 96.6 0.08 1.7E-06 59.9 16.9 104 226-338 115-225 (342)
205 CHL00195 ycf46 Ycf46; Provisio 96.5 0.013 2.9E-07 69.6 11.2 152 138-309 227-406 (489)
206 PF02562 PhoH: PhoH-like prote 96.5 0.0064 1.4E-07 62.8 7.4 126 144-278 5-157 (205)
207 PRK07993 DNA polymerase III su 96.5 0.068 1.5E-06 60.7 16.2 165 147-336 10-202 (334)
208 KOG4579 Leucine-rich repeat (L 96.5 0.00023 5.1E-09 65.6 -3.0 82 510-614 53-134 (177)
209 KOG2035 Replication factor C, 96.4 0.034 7.4E-07 58.2 11.5 227 140-382 14-282 (351)
210 TIGR02640 gas_vesic_GvpN gas v 96.4 0.085 1.9E-06 58.1 15.6 56 146-208 9-64 (262)
211 COG0542 clpA ATP-binding subun 96.3 0.075 1.6E-06 65.4 16.0 104 140-251 492-605 (786)
212 TIGR02237 recomb_radB DNA repa 96.3 0.015 3.2E-07 62.1 9.2 49 159-210 11-59 (209)
213 PF00448 SRP54: SRP54-type pro 96.3 0.021 4.5E-07 59.5 9.9 87 161-249 2-93 (196)
214 TIGR01243 CDC48 AAA family ATP 96.3 0.046 9.9E-07 70.1 15.1 171 138-332 452-657 (733)
215 KOG0743 AAA+-type ATPase [Post 96.3 0.81 1.8E-05 52.3 22.6 153 161-345 236-417 (457)
216 PRK08181 transposase; Validate 96.3 0.0061 1.3E-07 66.5 6.1 79 153-251 101-179 (269)
217 PRK12377 putative replication 96.3 0.02 4.3E-07 61.7 9.6 76 159-251 100-175 (248)
218 PRK08939 primosomal protein Dn 96.2 0.012 2.5E-07 66.0 7.9 115 143-275 135-259 (306)
219 PF10443 RNA12: RNA12 protein; 96.2 0.12 2.7E-06 58.8 15.8 193 144-346 1-286 (431)
220 KOG0730 AAA+-type ATPase [Post 96.2 0.038 8.2E-07 65.2 12.0 168 134-321 429-630 (693)
221 COG1875 NYN ribonuclease and A 96.2 0.0097 2.1E-07 64.8 6.6 139 138-277 223-388 (436)
222 PF13207 AAA_17: AAA domain; P 96.2 0.0043 9.3E-08 59.5 3.7 23 162-184 1-23 (121)
223 TIGR03345 VI_ClpV1 type VI sec 96.1 0.013 2.8E-07 75.2 8.8 46 140-185 567-621 (852)
224 smart00763 AAA_PrkA PrkA AAA d 96.1 0.0073 1.6E-07 67.6 5.6 47 140-186 52-104 (361)
225 PRK06921 hypothetical protein; 96.1 0.011 2.5E-07 64.7 7.1 71 159-248 116-186 (266)
226 KOG0739 AAA+-type ATPase [Post 96.1 0.065 1.4E-06 56.6 11.9 171 138-330 132-333 (439)
227 PRK10787 DNA-binding ATP-depen 96.1 0.013 2.9E-07 74.2 8.5 157 140-308 323-506 (784)
228 TIGR01243 CDC48 AAA family ATP 96.1 0.031 6.6E-07 71.7 11.9 175 138-334 177-383 (733)
229 TIGR02639 ClpA ATP-dependent C 96.1 0.014 3.1E-07 74.3 8.8 102 140-251 455-565 (731)
230 TIGR03499 FlhF flagellar biosy 96.1 0.027 5.8E-07 62.6 9.9 88 159-248 193-281 (282)
231 KOG2123 Uncharacterized conser 96.1 0.00027 5.9E-09 73.1 -5.3 105 557-669 18-123 (388)
232 KOG2739 Leucine-rich acidic nu 96.1 0.0031 6.6E-08 65.8 2.0 110 556-675 41-155 (260)
233 cd01123 Rad51_DMC1_radA Rad51_ 96.1 0.019 4.2E-07 62.5 8.5 91 159-250 18-126 (235)
234 TIGR01425 SRP54_euk signal rec 96.0 0.35 7.6E-06 56.2 18.6 27 159-185 99-125 (429)
235 PRK14722 flhF flagellar biosyn 96.0 0.027 5.8E-07 64.2 9.2 89 160-250 137-226 (374)
236 cd01133 F1-ATPase_beta F1 ATP 96.0 0.044 9.5E-07 59.4 10.4 89 161-251 70-175 (274)
237 TIGR03346 chaperone_ClpB ATP-d 96.0 0.018 3.8E-07 74.7 8.8 115 140-261 566-691 (852)
238 COG2884 FtsE Predicted ATPase 95.9 0.025 5.4E-07 56.0 7.5 120 159-282 27-202 (223)
239 PRK04132 replication factor C 95.9 0.11 2.3E-06 65.6 15.0 154 168-338 574-731 (846)
240 PRK06526 transposase; Provisio 95.9 0.0071 1.5E-07 65.7 4.2 74 160-251 98-171 (254)
241 COG2812 DnaX DNA polymerase II 95.9 0.059 1.3E-06 63.6 11.9 188 138-333 15-215 (515)
242 PRK00771 signal recognition pa 95.9 0.35 7.7E-06 56.8 18.2 87 159-249 94-185 (437)
243 PRK11889 flhF flagellar biosyn 95.9 0.066 1.4E-06 60.5 11.4 90 159-250 240-331 (436)
244 PRK09183 transposase/IS protei 95.9 0.013 2.8E-07 64.1 6.0 74 161-251 103-176 (259)
245 PF01695 IstB_IS21: IstB-like 95.9 0.0055 1.2E-07 62.8 2.8 75 159-251 46-120 (178)
246 PRK09270 nucleoside triphospha 95.8 0.052 1.1E-06 58.6 10.5 29 158-186 31-59 (229)
247 COG5238 RNA1 Ran GTPase-activa 95.8 0.0047 1E-07 64.0 2.1 135 534-676 29-198 (388)
248 TIGR02902 spore_lonB ATP-depen 95.8 0.028 6.1E-07 68.4 9.1 48 138-185 64-111 (531)
249 PRK06696 uridine kinase; Valid 95.8 0.015 3.2E-07 62.6 6.0 43 143-185 2-47 (223)
250 KOG0727 26S proteasome regulat 95.8 0.3 6.6E-06 50.2 14.6 94 138-251 154-260 (408)
251 KOG0734 AAA+-type ATPase conta 95.8 0.024 5.1E-07 64.6 7.5 95 137-251 305-408 (752)
252 KOG0735 AAA+-type ATPase [Post 95.8 0.057 1.2E-06 63.9 10.7 152 161-331 432-608 (952)
253 PRK08699 DNA polymerase III su 95.7 0.11 2.4E-06 58.7 12.7 154 160-334 21-202 (325)
254 PRK07952 DNA replication prote 95.7 0.068 1.5E-06 57.5 10.3 90 146-251 83-174 (244)
255 CHL00095 clpC Clp protease ATP 95.7 0.037 8.1E-07 71.5 10.0 106 139-251 509-623 (821)
256 TIGR02012 tigrfam_recA protein 95.6 0.047 1E-06 60.9 9.3 85 159-250 54-144 (321)
257 COG0470 HolB ATPase involved i 95.6 0.054 1.2E-06 62.5 10.3 138 141-294 3-167 (325)
258 PRK12727 flagellar biosynthesi 95.6 0.042 9E-07 64.6 9.0 88 160-249 350-438 (559)
259 KOG0736 Peroxisome assembly fa 95.6 0.28 6.1E-06 59.0 15.7 97 135-251 668-776 (953)
260 PRK10867 signal recognition pa 95.6 0.72 1.6E-05 54.1 19.1 27 159-185 99-125 (433)
261 KOG0733 Nuclear AAA ATPase (VC 95.6 0.17 3.7E-06 59.1 13.4 174 137-332 509-718 (802)
262 cd01393 recA_like RecA is a b 95.5 0.049 1.1E-06 58.9 9.0 51 159-209 18-72 (226)
263 COG1484 DnaC DNA replication p 95.5 0.053 1.1E-06 59.1 9.0 76 159-251 104-179 (254)
264 PRK11034 clpA ATP-dependent Cl 95.5 0.032 7E-07 70.1 8.3 102 140-251 459-569 (758)
265 PF07693 KAP_NTPase: KAP famil 95.5 0.57 1.2E-05 54.0 18.2 42 146-187 3-47 (325)
266 TIGR02238 recomb_DMC1 meiotic 95.5 0.052 1.1E-06 61.0 8.9 90 159-249 95-201 (313)
267 cd01120 RecA-like_NTPases RecA 95.4 0.082 1.8E-06 53.7 9.7 40 162-203 1-40 (165)
268 cd00983 recA RecA is a bacter 95.4 0.063 1.4E-06 59.9 9.2 85 159-250 54-144 (325)
269 PRK09361 radB DNA repair and r 95.4 0.058 1.3E-06 58.2 8.9 47 159-208 22-68 (225)
270 COG1618 Predicted nucleotide k 95.4 0.022 4.7E-07 54.8 4.7 31 161-192 6-36 (179)
271 PF08423 Rad51: Rad51; InterP 95.4 0.11 2.3E-06 56.9 10.8 88 161-249 39-143 (256)
272 PRK05541 adenylylsulfate kinas 95.4 0.037 8E-07 57.1 6.9 36 159-196 6-41 (176)
273 COG0542 clpA ATP-binding subun 95.4 0.092 2E-06 64.7 11.2 158 138-308 169-346 (786)
274 cd02025 PanK Pantothenate kina 95.3 0.073 1.6E-06 56.8 9.2 45 162-206 1-45 (220)
275 PRK09354 recA recombinase A; P 95.3 0.072 1.6E-06 60.0 9.4 85 159-250 59-149 (349)
276 PRK12724 flagellar biosynthesi 95.3 0.064 1.4E-06 61.5 9.1 85 160-248 223-308 (432)
277 TIGR00554 panK_bact pantothena 95.3 0.091 2E-06 58.0 10.0 51 158-208 60-110 (290)
278 KOG2123 Uncharacterized conser 95.2 0.0008 1.7E-08 69.7 -5.7 78 557-634 40-123 (388)
279 PF03215 Rad17: Rad17 cell cyc 95.2 0.1 2.3E-06 62.6 10.8 51 144-198 24-79 (519)
280 KOG1532 GTPase XAB1, interacts 95.1 0.099 2.2E-06 54.6 8.9 63 159-221 18-89 (366)
281 PRK06835 DNA replication prote 95.1 0.057 1.2E-06 61.0 7.9 100 161-276 184-288 (329)
282 TIGR02858 spore_III_AA stage I 95.1 0.11 2.5E-06 56.8 10.0 123 149-281 99-233 (270)
283 PLN03187 meiotic recombination 95.1 0.11 2.3E-06 59.0 9.8 59 159-218 125-187 (344)
284 PRK08533 flagellar accessory p 95.0 0.12 2.6E-06 55.6 9.8 49 159-211 23-71 (230)
285 KOG2739 Leucine-rich acidic nu 95.0 0.011 2.4E-07 61.7 1.8 84 531-614 61-154 (260)
286 KOG1969 DNA replication checkp 95.0 0.047 1E-06 65.0 6.9 76 158-251 324-399 (877)
287 PRK04296 thymidine kinase; Pro 95.0 0.034 7.4E-07 57.9 5.3 110 161-278 3-117 (190)
288 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.063 1.4E-06 55.8 7.4 24 162-185 1-24 (183)
289 PRK06547 hypothetical protein; 95.0 0.035 7.6E-07 56.4 5.2 35 151-185 6-40 (172)
290 PF00485 PRK: Phosphoribulokin 94.9 0.11 2.4E-06 54.4 9.2 24 162-185 1-24 (194)
291 cd03115 SRP The signal recogni 94.9 0.093 2E-06 53.9 8.5 24 162-185 2-25 (173)
292 PRK12723 flagellar biosynthesi 94.9 0.18 4E-06 58.1 11.5 90 159-250 173-265 (388)
293 COG0194 Gmk Guanylate kinase [ 94.9 0.075 1.6E-06 53.0 6.9 25 160-184 4-28 (191)
294 PRK15455 PrkA family serine pr 94.9 0.031 6.7E-07 65.9 5.0 46 140-185 77-128 (644)
295 KOG0728 26S proteasome regulat 94.8 0.36 7.7E-06 49.7 11.7 130 159-308 180-331 (404)
296 PRK10733 hflB ATP-dependent me 94.8 0.13 2.8E-06 64.3 10.8 128 162-309 187-336 (644)
297 PRK12726 flagellar biosynthesi 94.8 0.15 3.3E-06 57.5 10.0 90 159-250 205-296 (407)
298 PF00006 ATP-synt_ab: ATP synt 94.8 0.087 1.9E-06 55.4 7.8 85 161-249 16-115 (215)
299 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.3E-07 36.6 0.6 21 581-601 1-21 (22)
300 PRK07667 uridine kinase; Provi 94.8 0.044 9.5E-07 57.3 5.5 37 149-185 4-42 (193)
301 PLN00020 ribulose bisphosphate 94.8 0.086 1.9E-06 58.7 7.8 28 159-186 147-174 (413)
302 TIGR00959 ffh signal recogniti 94.8 0.31 6.6E-06 57.1 12.9 27 159-185 98-124 (428)
303 TIGR02239 recomb_RAD51 DNA rep 94.8 0.11 2.5E-06 58.5 9.1 58 159-217 95-156 (316)
304 TIGR03877 thermo_KaiC_1 KaiC d 94.7 0.18 4E-06 54.7 10.5 49 159-211 20-68 (237)
305 PRK07132 DNA polymerase III su 94.7 0.74 1.6E-05 51.3 15.2 166 149-337 6-184 (299)
306 COG0464 SpoVK ATPases of the A 94.7 0.33 7.2E-06 59.3 13.8 132 159-310 275-425 (494)
307 PRK05703 flhF flagellar biosyn 94.7 0.099 2.2E-06 61.5 8.7 86 161-248 222-308 (424)
308 PRK14974 cell division protein 94.7 0.22 4.7E-06 56.3 11.0 89 159-251 139-234 (336)
309 KOG3864 Uncharacterized conser 94.7 0.0042 9.1E-08 61.9 -2.3 49 1171-1219 117-167 (221)
310 COG0541 Ffh Signal recognition 94.6 1.9 4.1E-05 49.2 17.9 59 159-219 99-158 (451)
311 KOG2228 Origin recognition com 94.6 0.28 6.1E-06 53.3 10.9 165 141-308 26-219 (408)
312 KOG0738 AAA+-type ATPase [Post 94.6 0.31 6.7E-06 53.9 11.3 27 159-185 244-270 (491)
313 cd03247 ABCC_cytochrome_bd The 94.6 0.11 2.3E-06 53.7 7.9 25 161-185 29-53 (178)
314 TIGR02236 recomb_radA DNA repa 94.6 0.16 3.5E-06 57.7 10.0 58 159-217 94-155 (310)
315 cd01121 Sms Sms (bacterial rad 94.6 0.12 2.7E-06 59.5 9.0 85 160-249 82-168 (372)
316 COG3640 CooC CO dehydrogenase 94.6 0.065 1.4E-06 55.2 5.8 43 162-205 2-44 (255)
317 PLN03186 DNA repair protein RA 94.6 0.12 2.7E-06 58.5 8.7 59 159-218 122-184 (342)
318 PRK05439 pantothenate kinase; 94.6 0.23 5E-06 55.2 10.7 81 158-240 84-166 (311)
319 cd01394 radB RadB. The archaea 94.5 0.14 3E-06 55.0 8.9 43 159-203 18-60 (218)
320 PTZ00035 Rad51 protein; Provis 94.5 0.19 4.1E-06 57.3 10.2 58 159-217 117-178 (337)
321 COG1102 Cmk Cytidylate kinase 94.5 0.13 2.8E-06 49.6 7.3 44 162-218 2-45 (179)
322 COG1419 FlhF Flagellar GTP-bin 94.5 0.31 6.8E-06 55.2 11.5 100 148-249 187-291 (407)
323 KOG0729 26S proteasome regulat 94.5 0.29 6.2E-06 50.8 10.1 94 138-251 176-282 (435)
324 cd02019 NK Nucleoside/nucleoti 94.4 0.034 7.4E-07 46.7 3.0 23 162-184 1-23 (69)
325 PRK04301 radA DNA repair and r 94.4 0.18 3.9E-06 57.4 9.9 58 159-217 101-162 (317)
326 KOG0744 AAA+-type ATPase [Post 94.4 0.085 1.8E-06 56.6 6.5 39 160-198 177-217 (423)
327 COG2607 Predicted ATPase (AAA+ 94.4 0.2 4.4E-06 51.7 8.8 101 136-262 57-165 (287)
328 cd01135 V_A-ATPase_B V/A-type 94.4 0.26 5.6E-06 53.4 10.1 91 161-251 70-178 (276)
329 cd01131 PilT Pilus retraction 94.4 0.062 1.3E-06 56.4 5.5 109 161-281 2-113 (198)
330 PF13238 AAA_18: AAA domain; P 94.4 0.034 7.3E-07 53.9 3.3 22 163-184 1-22 (129)
331 PRK06995 flhF flagellar biosyn 94.3 0.18 3.9E-06 59.6 9.6 59 160-218 256-315 (484)
332 PRK14721 flhF flagellar biosyn 94.3 0.24 5.1E-06 57.6 10.4 87 160-248 191-278 (420)
333 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.054 1.2E-06 57.5 4.9 24 160-183 29-52 (213)
334 COG0468 RecA RecA/RadA recombi 94.3 0.26 5.7E-06 53.7 10.0 89 159-250 59-152 (279)
335 TIGR00064 ftsY signal recognit 94.2 0.29 6.4E-06 53.9 10.7 39 159-199 71-109 (272)
336 PF13481 AAA_25: AAA domain; P 94.2 0.24 5.2E-06 52.0 9.7 49 161-211 33-89 (193)
337 COG1428 Deoxynucleoside kinase 94.2 0.04 8.6E-07 56.0 3.3 26 160-185 4-29 (216)
338 PF00560 LRR_1: Leucine Rich R 94.2 0.025 5.3E-07 35.0 1.2 22 536-557 1-22 (22)
339 PRK14723 flhF flagellar biosyn 94.1 0.2 4.4E-06 62.1 10.0 88 160-249 185-273 (767)
340 PRK05480 uridine/cytidine kina 94.1 0.046 1E-06 58.2 4.0 27 158-184 4-30 (209)
341 TIGR00235 udk uridine kinase. 94.1 0.049 1.1E-06 57.8 4.2 28 158-185 4-31 (207)
342 COG0572 Udk Uridine kinase [Nu 94.1 0.051 1.1E-06 56.1 4.1 27 159-185 7-33 (218)
343 COG4088 Predicted nucleotide k 94.1 0.035 7.7E-07 55.4 2.7 25 161-185 2-26 (261)
344 PRK04328 hypothetical protein; 94.1 0.22 4.9E-06 54.3 9.3 53 159-216 22-74 (249)
345 PF01583 APS_kinase: Adenylyls 94.1 0.08 1.7E-06 52.1 5.1 27 161-187 3-29 (156)
346 PRK08233 hypothetical protein; 94.1 0.045 9.7E-07 56.9 3.7 26 160-185 3-28 (182)
347 PTZ00301 uridine kinase; Provi 94.0 0.05 1.1E-06 57.2 3.9 26 160-185 3-28 (210)
348 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.16 3.4E-06 50.2 7.2 26 160-185 26-51 (144)
349 PF07728 AAA_5: AAA domain (dy 94.0 0.12 2.5E-06 50.9 6.3 43 163-210 2-44 (139)
350 PF13306 LRR_5: Leucine rich r 94.0 0.12 2.7E-06 49.9 6.4 101 530-636 7-111 (129)
351 PF13306 LRR_5: Leucine rich r 94.0 0.17 3.6E-06 49.0 7.3 115 508-630 10-128 (129)
352 PF03205 MobB: Molybdopterin g 93.9 0.086 1.9E-06 51.5 5.1 39 161-200 1-39 (140)
353 cd03238 ABC_UvrA The excision 93.9 0.16 3.4E-06 51.9 7.1 119 160-292 21-161 (176)
354 TIGR03305 alt_F1F0_F1_bet alte 93.9 0.31 6.6E-06 56.9 10.2 90 161-251 139-244 (449)
355 PRK12597 F0F1 ATP synthase sub 93.8 0.28 6.1E-06 57.6 10.0 89 161-250 144-248 (461)
356 COG0563 Adk Adenylate kinase a 93.8 0.12 2.6E-06 52.7 6.1 24 162-185 2-25 (178)
357 PF13671 AAA_33: AAA domain; P 93.8 0.054 1.2E-06 53.6 3.5 24 162-185 1-24 (143)
358 PRK06762 hypothetical protein; 93.8 0.058 1.3E-06 55.0 3.9 25 160-184 2-26 (166)
359 PRK13948 shikimate kinase; Pro 93.8 0.3 6.4E-06 50.1 8.8 27 159-185 9-35 (182)
360 PRK08972 fliI flagellum-specif 93.7 0.17 3.6E-06 58.6 7.7 87 161-251 163-264 (444)
361 cd03216 ABC_Carb_Monos_I This 93.7 0.083 1.8E-06 53.5 4.8 115 160-281 26-146 (163)
362 cd03222 ABC_RNaseL_inhibitor T 93.7 0.15 3.4E-06 52.0 6.7 26 160-185 25-50 (177)
363 cd03223 ABCD_peroxisomal_ALDP 93.7 0.27 5.8E-06 50.0 8.4 26 160-185 27-52 (166)
364 PRK05917 DNA polymerase III su 93.6 1.1 2.4E-05 49.2 13.5 127 147-295 5-154 (290)
365 TIGR01360 aden_kin_iso1 adenyl 93.6 0.061 1.3E-06 56.2 3.8 26 159-184 2-27 (188)
366 PF08433 KTI12: Chromatin asso 93.6 0.2 4.3E-06 55.0 7.8 26 161-186 2-27 (270)
367 COG1066 Sms Predicted ATP-depe 93.6 0.23 4.9E-06 55.7 8.0 85 160-250 93-179 (456)
368 PRK03839 putative kinase; Prov 93.6 0.061 1.3E-06 55.7 3.6 24 162-185 2-25 (180)
369 KOG1514 Origin recognition com 93.6 3.3 7.2E-05 50.0 17.8 198 140-341 397-624 (767)
370 PRK13230 nitrogenase reductase 93.6 0.089 1.9E-06 58.9 5.2 39 161-201 2-40 (279)
371 cd03214 ABC_Iron-Siderophores_ 93.5 0.29 6.2E-06 50.6 8.6 116 160-280 25-161 (180)
372 TIGR01069 mutS2 MutS2 family p 93.5 0.19 4.1E-06 63.9 8.5 183 159-359 321-522 (771)
373 KOG0737 AAA+-type ATPase [Post 93.5 0.87 1.9E-05 50.5 12.2 51 138-190 91-155 (386)
374 PRK13236 nitrogenase reductase 93.5 0.1 2.2E-06 58.7 5.5 30 157-186 3-32 (296)
375 PRK08927 fliI flagellum-specif 93.5 0.38 8.3E-06 56.0 10.1 88 160-251 158-260 (442)
376 PRK06067 flagellar accessory p 93.5 0.37 7.9E-06 52.3 9.7 49 159-211 24-72 (234)
377 PF00154 RecA: recA bacterial 93.5 0.38 8.3E-06 53.6 9.7 85 160-251 53-143 (322)
378 PRK09280 F0F1 ATP synthase sub 93.5 0.44 9.5E-06 55.8 10.6 90 161-251 145-250 (463)
379 PF00910 RNA_helicase: RNA hel 93.5 0.059 1.3E-06 50.0 2.9 23 163-185 1-23 (107)
380 cd02027 APSK Adenosine 5'-phos 93.4 0.38 8.2E-06 47.8 8.8 24 162-185 1-24 (149)
381 PRK13949 shikimate kinase; Pro 93.4 0.084 1.8E-06 53.7 4.2 24 162-185 3-26 (169)
382 cd03228 ABCC_MRP_Like The MRP 93.4 0.24 5.1E-06 50.7 7.6 26 160-185 28-53 (171)
383 TIGR03575 selen_PSTK_euk L-ser 93.4 0.18 3.9E-06 56.8 7.1 37 163-200 2-38 (340)
384 COG0465 HflB ATP-dependent Zn 93.4 0.33 7.2E-06 58.3 9.6 170 139-332 150-355 (596)
385 PRK00625 shikimate kinase; Pro 93.4 0.068 1.5E-06 54.4 3.4 24 162-185 2-25 (173)
386 CHL00206 ycf2 Ycf2; Provisiona 93.3 0.5 1.1E-05 63.4 11.7 26 160-185 1630-1655(2281)
387 PRK04040 adenylate kinase; Pro 93.3 0.076 1.6E-06 55.0 3.8 25 161-185 3-27 (188)
388 PRK13531 regulatory ATPase Rav 93.3 0.13 2.7E-06 60.2 5.9 50 140-191 21-70 (498)
389 cd03283 ABC_MutS-like MutS-lik 93.3 0.25 5.4E-06 51.8 7.6 24 161-184 26-49 (199)
390 KOG3347 Predicted nucleotide k 93.3 0.077 1.7E-06 50.2 3.3 35 160-201 7-41 (176)
391 COG4608 AppF ABC-type oligopep 93.3 0.2 4.4E-06 53.4 6.9 120 159-282 38-175 (268)
392 COG0467 RAD55 RecA-superfamily 93.2 0.22 4.7E-06 55.1 7.5 55 158-217 21-75 (260)
393 cd01124 KaiC KaiC is a circadi 93.2 0.24 5.3E-06 51.6 7.6 45 162-210 1-45 (187)
394 cd03246 ABCC_Protease_Secretio 93.2 0.2 4.2E-06 51.5 6.7 26 160-185 28-53 (173)
395 PRK06851 hypothetical protein; 93.2 0.85 1.8E-05 52.0 12.1 43 157-200 211-253 (367)
396 PTZ00088 adenylate kinase 1; P 93.2 0.3 6.5E-06 52.2 8.1 23 163-185 9-31 (229)
397 PRK13232 nifH nitrogenase redu 93.1 0.1 2.2E-06 58.2 4.7 25 161-185 2-26 (273)
398 PRK10751 molybdopterin-guanine 93.1 0.095 2.1E-06 52.7 4.0 28 159-186 5-32 (173)
399 PRK13235 nifH nitrogenase redu 93.1 0.11 2.3E-06 58.1 4.8 25 161-185 2-26 (274)
400 PF12775 AAA_7: P-loop contain 93.1 0.1 2.2E-06 57.5 4.6 88 149-249 23-110 (272)
401 PF03308 ArgK: ArgK protein; 93.1 0.19 4E-06 53.3 6.1 57 147-203 14-72 (266)
402 TIGR02655 circ_KaiC circadian 93.0 0.38 8.1E-06 58.3 9.6 85 159-248 262-362 (484)
403 PF14532 Sigma54_activ_2: Sigm 93.0 0.03 6.6E-07 54.9 0.2 43 143-185 2-46 (138)
404 TIGR00390 hslU ATP-dependent p 93.0 0.28 6.1E-06 56.2 7.8 73 141-215 14-104 (441)
405 PF06309 Torsin: Torsin; Inte 92.8 0.23 5E-06 46.4 5.7 44 141-184 27-77 (127)
406 cd02024 NRK1 Nicotinamide ribo 92.8 0.079 1.7E-06 54.4 3.0 23 162-184 1-23 (187)
407 TIGR01040 V-ATPase_V1_B V-type 92.8 0.58 1.3E-05 54.4 10.1 91 161-251 142-259 (466)
408 PRK12678 transcription termina 92.7 0.4 8.7E-06 56.6 8.7 90 161-251 417-515 (672)
409 TIGR03878 thermo_KaiC_2 KaiC d 92.7 0.5 1.1E-05 51.9 9.3 40 159-200 35-74 (259)
410 PRK13768 GTPase; Provisional 92.7 0.5 1.1E-05 51.7 9.2 27 160-186 2-28 (253)
411 PRK10463 hydrogenase nickel in 92.7 0.19 4.1E-06 55.0 5.8 37 149-185 93-129 (290)
412 PRK13765 ATP-dependent proteas 92.7 0.22 4.8E-06 61.3 7.0 78 137-218 29-106 (637)
413 KOG3864 Uncharacterized conser 92.7 0.03 6.4E-07 56.1 -0.3 69 780-850 122-190 (221)
414 PRK11823 DNA repair protein Ra 92.6 0.27 5.9E-06 58.5 7.6 85 160-249 80-166 (446)
415 TIGR01041 ATP_syn_B_arch ATP s 92.6 0.6 1.3E-05 55.0 10.2 91 161-251 142-250 (458)
416 cd00544 CobU Adenosylcobinamid 92.6 0.42 9E-06 48.4 7.8 80 163-248 2-82 (169)
417 TIGR01039 atpD ATP synthase, F 92.6 0.65 1.4E-05 54.2 10.3 90 161-251 144-249 (461)
418 PRK00279 adk adenylate kinase; 92.6 0.45 9.7E-06 50.8 8.6 24 162-185 2-25 (215)
419 cd02023 UMPK Uridine monophosp 92.6 0.081 1.8E-06 55.8 2.9 23 162-184 1-23 (198)
420 PRK08149 ATP synthase SpaL; Va 92.6 0.47 1E-05 55.2 9.2 88 160-251 151-253 (428)
421 PRK00131 aroK shikimate kinase 92.6 0.1 2.2E-06 53.8 3.5 26 160-185 4-29 (175)
422 PRK00889 adenylylsulfate kinas 92.5 0.13 2.9E-06 52.8 4.3 27 159-185 3-29 (175)
423 PRK00409 recombination and DNA 92.5 0.57 1.2E-05 59.8 10.6 180 158-359 325-527 (782)
424 PRK10416 signal recognition pa 92.4 1.1 2.3E-05 50.7 11.6 28 159-186 113-140 (318)
425 cd02020 CMPK Cytidine monophos 92.4 0.099 2.1E-06 52.0 3.1 24 162-185 1-24 (147)
426 TIGR02030 BchI-ChlI magnesium 92.4 0.18 4E-06 57.1 5.5 47 138-184 3-49 (337)
427 TIGR02322 phosphon_PhnN phosph 92.4 0.11 2.4E-06 53.7 3.5 25 161-185 2-26 (179)
428 PF07726 AAA_3: ATPase family 92.4 0.093 2E-06 49.1 2.5 28 163-192 2-29 (131)
429 PRK06217 hypothetical protein; 92.4 0.1 2.3E-06 54.0 3.3 24 162-185 3-26 (183)
430 PHA02774 E1; Provisional 92.4 0.24 5.2E-06 58.8 6.5 48 147-198 420-468 (613)
431 cd01134 V_A-ATPase_A V/A-type 92.3 0.82 1.8E-05 51.1 10.1 47 161-211 158-205 (369)
432 cd02028 UMPK_like Uridine mono 92.3 0.11 2.4E-06 53.4 3.3 24 162-185 1-24 (179)
433 TIGR00176 mobB molybdopterin-g 92.3 0.18 3.9E-06 50.3 4.7 34 162-196 1-34 (155)
434 TIGR00416 sms DNA repair prote 92.3 0.4 8.7E-06 57.1 8.5 86 159-249 93-180 (454)
435 TIGR00150 HI0065_YjeE ATPase, 92.3 0.22 4.8E-06 47.6 5.1 27 160-186 22-48 (133)
436 PRK09519 recA DNA recombinatio 92.3 0.48 1E-05 59.2 9.3 85 159-250 59-149 (790)
437 PRK05342 clpX ATP-dependent pr 92.3 0.28 6.1E-06 57.3 7.0 45 141-185 73-133 (412)
438 PF06745 KaiC: KaiC; InterPro 92.3 0.29 6.3E-06 52.8 6.7 49 160-211 19-67 (226)
439 COG0003 ArsA Predicted ATPase 92.3 0.25 5.4E-06 55.3 6.2 49 160-210 2-50 (322)
440 PLN02200 adenylate kinase fami 92.2 0.52 1.1E-05 50.7 8.4 26 160-185 43-68 (234)
441 cd00267 ABC_ATPase ABC (ATP-bi 92.2 0.31 6.8E-06 49.0 6.4 113 161-281 26-144 (157)
442 PRK13234 nifH nitrogenase redu 92.1 0.2 4.4E-06 56.3 5.3 39 159-199 3-41 (295)
443 CHL00081 chlI Mg-protoporyphyr 92.1 0.17 3.6E-06 57.3 4.6 49 137-185 15-63 (350)
444 cd01132 F1_ATPase_alpha F1 ATP 92.1 0.69 1.5E-05 50.2 9.0 94 161-258 70-181 (274)
445 PRK14532 adenylate kinase; Pro 92.1 0.49 1.1E-05 49.3 7.9 22 163-184 3-24 (188)
446 PRK06936 type III secretion sy 92.0 0.6 1.3E-05 54.4 9.1 88 160-251 162-264 (439)
447 TIGR01817 nifA Nif-specific re 92.0 0.82 1.8E-05 56.5 11.1 48 138-185 195-244 (534)
448 KOG1051 Chaperone HSP104 and r 92.0 0.63 1.4E-05 58.6 9.8 102 140-251 563-672 (898)
449 cd02029 PRK_like Phosphoribulo 92.0 0.43 9.3E-06 51.3 7.3 24 162-185 1-24 (277)
450 cd01125 repA Hexameric Replica 92.0 0.76 1.6E-05 50.0 9.6 26 162-187 3-28 (239)
451 PF00625 Guanylate_kin: Guanyl 92.0 0.17 3.7E-06 52.5 4.3 38 160-199 2-39 (183)
452 KOG0735 AAA+-type ATPase [Post 92.0 1.6 3.4E-05 52.5 12.2 71 161-251 702-772 (952)
453 PRK06002 fliI flagellum-specif 92.0 0.63 1.4E-05 54.3 9.2 89 160-251 165-266 (450)
454 PRK13695 putative NTPase; Prov 92.0 0.21 4.5E-06 51.3 4.9 34 162-196 2-35 (174)
455 CHL00060 atpB ATP synthase CF1 92.0 0.6 1.3E-05 54.9 9.1 90 161-251 162-274 (494)
456 PRK13947 shikimate kinase; Pro 92.0 0.13 2.8E-06 52.8 3.3 24 162-185 3-26 (171)
457 PRK11608 pspF phage shock prot 91.9 0.25 5.5E-06 56.3 6.0 44 140-183 7-52 (326)
458 COG1936 Predicted nucleotide k 91.9 0.11 2.4E-06 51.0 2.5 20 162-181 2-21 (180)
459 COG3854 SpoIIIAA ncharacterize 91.9 0.48 1E-05 48.6 7.0 121 151-281 128-257 (308)
460 cd02021 GntK Gluconate kinase 91.9 0.12 2.5E-06 51.7 2.9 23 162-184 1-23 (150)
461 KOG0927 Predicted transporter 91.9 0.88 1.9E-05 52.9 9.9 118 160-279 416-568 (614)
462 cd00227 CPT Chloramphenicol (C 91.9 0.13 2.9E-06 52.8 3.3 25 161-185 3-27 (175)
463 PRK04196 V-type ATP synthase s 91.8 0.77 1.7E-05 54.3 9.9 90 161-251 144-252 (460)
464 cd00561 CobA_CobO_BtuR ATP:cor 91.8 1.4 3E-05 43.7 10.2 115 161-278 3-139 (159)
465 TIGR00073 hypB hydrogenase acc 91.8 0.27 5.8E-06 52.1 5.7 32 154-185 16-47 (207)
466 COG0488 Uup ATPase components 91.8 0.63 1.4E-05 56.2 9.3 128 161-294 349-511 (530)
467 COG0529 CysC Adenylylsulfate k 91.7 0.26 5.7E-06 48.5 4.8 30 157-186 20-49 (197)
468 PTZ00185 ATPase alpha subunit; 91.7 0.53 1.1E-05 55.1 8.1 90 161-251 190-301 (574)
469 PF13245 AAA_19: Part of AAA d 91.7 0.37 8.1E-06 41.2 5.3 26 159-184 9-35 (76)
470 PRK13975 thymidylate kinase; P 91.7 0.16 3.4E-06 53.5 3.7 25 161-185 3-27 (196)
471 COG1703 ArgK Putative periplas 91.6 0.39 8.4E-06 51.7 6.3 59 149-207 38-98 (323)
472 cd00464 SK Shikimate kinase (S 91.6 0.15 3.3E-06 51.1 3.4 23 163-185 2-24 (154)
473 PRK15453 phosphoribulokinase; 91.6 1 2.3E-05 48.8 9.7 27 159-185 4-30 (290)
474 COG0237 CoaE Dephospho-CoA kin 91.6 0.48 1E-05 49.3 6.9 23 160-182 2-24 (201)
475 PRK14530 adenylate kinase; Pro 91.5 0.15 3.3E-06 54.4 3.5 25 161-185 4-28 (215)
476 PRK15429 formate hydrogenlyase 91.5 0.38 8.3E-06 61.3 7.6 47 139-185 376-424 (686)
477 TIGR03263 guanyl_kin guanylate 91.5 0.13 2.8E-06 53.2 2.9 24 161-184 2-25 (180)
478 PRK03846 adenylylsulfate kinas 91.5 0.26 5.7E-06 51.8 5.2 28 158-185 22-49 (198)
479 KOG0652 26S proteasome regulat 91.5 4.1 9E-05 42.5 13.2 52 134-185 166-230 (424)
480 cd01136 ATPase_flagellum-secre 91.5 0.76 1.6E-05 51.6 8.9 88 160-251 69-171 (326)
481 TIGR03881 KaiC_arch_4 KaiC dom 91.5 0.87 1.9E-05 49.2 9.3 53 159-216 19-71 (229)
482 COG1124 DppF ABC-type dipeptid 91.5 0.18 3.8E-06 52.6 3.6 26 160-185 33-58 (252)
483 PF03266 NTPase_1: NTPase; In 91.4 0.28 6E-06 49.7 5.0 23 163-185 2-24 (168)
484 PRK05057 aroK shikimate kinase 91.4 0.17 3.6E-06 51.8 3.4 25 161-185 5-29 (172)
485 TIGR00764 lon_rel lon-related 91.4 0.53 1.1E-05 58.3 8.3 76 138-217 17-92 (608)
486 TIGR00750 lao LAO/AO transport 91.4 0.63 1.4E-05 52.5 8.4 29 158-186 32-60 (300)
487 PF03029 ATP_bind_1: Conserved 91.4 0.17 3.7E-06 54.5 3.6 33 165-199 1-33 (238)
488 PF13504 LRR_7: Leucine rich r 91.4 0.12 2.5E-06 29.6 1.2 16 581-596 2-17 (17)
489 cd00820 PEPCK_HprK Phosphoenol 91.4 0.18 3.9E-06 46.0 3.1 22 160-181 15-36 (107)
490 cd00071 GMPK Guanosine monopho 91.3 0.14 3.1E-06 49.9 2.7 23 162-184 1-23 (137)
491 KOG0473 Leucine-rich repeat pr 91.3 0.0056 1.2E-07 62.0 -7.1 84 554-639 38-122 (326)
492 COG2019 AdkA Archaeal adenylat 91.3 0.19 4.2E-06 48.7 3.4 25 160-184 4-28 (189)
493 COG1763 MobB Molybdopterin-gua 91.2 0.2 4.3E-06 49.6 3.6 28 160-187 2-29 (161)
494 PRK00300 gmk guanylate kinase; 91.2 0.16 3.5E-06 53.8 3.2 25 160-184 5-29 (205)
495 TIGR00382 clpX endopeptidase C 91.1 0.67 1.5E-05 53.9 8.3 45 141-185 79-141 (413)
496 PF00406 ADK: Adenylate kinase 91.1 0.34 7.3E-06 48.4 5.3 21 165-185 1-21 (151)
497 cd01122 GP4d_helicase GP4d_hel 91.1 1.3 2.8E-05 49.3 10.5 52 160-214 30-81 (271)
498 PRK12339 2-phosphoglycerate ki 91.0 0.21 4.6E-06 51.9 3.8 25 160-184 3-27 (197)
499 COG4240 Predicted kinase [Gene 91.0 1.1 2.4E-05 45.9 8.5 81 158-239 48-133 (300)
500 PRK13407 bchI magnesium chelat 91.0 0.28 6E-06 55.5 4.9 48 137-184 6-53 (334)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-86 Score=812.61 Aligned_cols=627 Identities=28% Similarity=0.432 Sum_probs=488.9
Q ss_pred ccccchhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHhhhhhchhhh--------
Q 000704 5 KQFGYFCCYKSNFDHLTKEVEKLRERRESVQHRVDFAKENGEEIEQSVENWLISVDKIVEEAGKFVEDDEEA-------- 76 (1342)
Q Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~v~~wl~~v~~~~~d~~~~~~~~~~~-------- 76 (1342)
+...++..+...+.+.++.+..+++.+..++.++++|+++ +.....+..|...+++++|++++.++.+.-.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~ 89 (889)
T KOG4658|consen 11 KLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-RDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND 89 (889)
T ss_pred hHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445677788899999999999999999999999999988 5567889999999999999999877643210
Q ss_pred ---------CCCccCCCC-CChhHHhHHHHHHHHHHHHHHHHhhcCCCcceeccccccccccccccccCCCcccccchHH
Q 000704 77 ---------NNPCFKVLC-PNLKNRHHLSKKAAKEVKAIVELQDEGNFDRVSVRGISRDRLVAYTESYNEGHEFIESRES 146 (1342)
Q Consensus 77 ---------~~~~~~~~~-~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~~ 146 (1342)
+.-|+...+ .....-+.+++++.++.+.++.+..++.|..+..... ........+...... +|.+.
T Consensus 90 ~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~-VG~e~ 165 (889)
T KOG4658|consen 90 LLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLD---PREKVETRPIQSESD-VGLET 165 (889)
T ss_pred HhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccccc---chhhcccCCCCcccc-ccHHH
Confidence 001211222 2233345566777777777777766655543332111 111222233333333 89999
Q ss_pred HHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh-cCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC---
Q 000704 147 ILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK-EGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--- 222 (1342)
Q Consensus 147 ~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--- 222 (1342)
.++++.+.|.+++..+++|+||||+||||||++++|+.. ++.+||.++||+||+.++.++++++|++.++......
T Consensus 166 ~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~ 245 (889)
T KOG4658|consen 166 MLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDK 245 (889)
T ss_pred HHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchh
Confidence 999999999987779999999999999999999999998 9999999999999999999999999999988744332
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhhhcCcCccEEecCCCHHHHHH
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWS 302 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~ 302 (1342)
.....+..+.+.|. +|||+|||||||+..+|+.++.|+|...+||||++|||++.||..+|++...++++.|+++|||.
T Consensus 246 ~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~ 324 (889)
T KOG4658|consen 246 EEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWD 324 (889)
T ss_pred hHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHH
Confidence 22455666666665 89999999999999999999999999999999999999999999668888999999999999999
Q ss_pred HHHHHhCCC--CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhH-HHHHHHHHhhc-ccCCcchH-HHHHhHHHH
Q 000704 303 LFSKVVGNC--VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFV-WKKALQELRFS-ARNFTGLE-ALLGSTIEL 377 (1342)
Q Consensus 303 lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~-w~~~l~~l~~~-~~~~~~~~-~~~~~~l~~ 377 (1342)
||++.||.. ...+.++++|++|+++|+|+|||++++|++|+.|.... |+++.+.+.+. ....++++ .++ ++|++
T Consensus 325 LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~-~iLkl 403 (889)
T KOG4658|consen 325 LFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL-PILKL 403 (889)
T ss_pred HHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH-Hhhhc
Confidence 999999743 34456999999999999999999999999999998774 99999999865 33344444 488 99999
Q ss_pred HhcccCcchhHHHHHhhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHHhHhhccccccCC---ccchhh
Q 000704 378 IYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDD---TADWFS 454 (1342)
Q Consensus 378 sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~ 454 (1342)
||++||++ +|.||+|||+||++|.++++.||.+|+||||+.+....+.+.+.+++|+++|++|+|++... ...+|+
T Consensus 404 Syd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~k 482 (889)
T KOG4658|consen 404 SYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVK 482 (889)
T ss_pred cHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEE
Confidence 99999965 99999999999995444559999999999999774444555666777899999999998764 346899
Q ss_pred hhhHHHHHHHHhhhc------ccEEecc-ccccCCccccccCceEEEecccCCCCCCCcCCCCCccEEEccCCCC-CCCC
Q 000704 455 MLGFVRNVAISIASI------NLMVRND-ALIEWPNKDMLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDP-FLHI 526 (1342)
Q Consensus 455 mhdlv~~~a~~~~~~------~~~~~~~-~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~-~~~~ 526 (1342)
|||+|||+|.++|++ ++++..+ +....+....+..+|+++++++.+..++....+++|++|.+.+|.. ...+
T Consensus 483 mHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i 562 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI 562 (889)
T ss_pred eeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc
Confidence 999999999999993 4333332 3333455555678999999999999999888999999999999874 5788
Q ss_pred ChhhhcCCCCccEEEecCC-CCCcCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcccCCCCcc
Q 000704 527 PDNFFAGMPKLRVLVLTRM-KLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQL 605 (1342)
Q Consensus 527 ~~~~f~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L 605 (1342)
+..+|..++.||||||++| .+.++|++|+.|.|||||+|++ +.+..||.++++|+.|
T Consensus 563 s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~----------------------t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 563 SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD----------------------TGISHLPSGLGNLKKL 620 (889)
T ss_pred CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC----------------------CCccccchHHHHHHhh
Confidence 8889999999999999976 5568898887777777665555 5566677777777777
Q ss_pred cEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEee
Q 000704 606 KLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1342)
Q Consensus 606 ~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 671 (1342)
.+|++..+..+..+| +++..|++||+|.+..... ......+.++.+|.+|+.+.+.
T Consensus 621 ~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~---------~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIP-GILLELQSLRVLRLPRSAL---------SNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred heecccccccccccc-chhhhcccccEEEeecccc---------ccchhhHHhhhcccchhhheee
Confidence 777777665554443 3355577777777654431 1123345666666666666654
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.8e-62 Score=645.12 Aligned_cols=685 Identities=21% Similarity=0.262 Sum_probs=446.1
Q ss_pred CcccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe---cCC----------
Q 000704 137 GHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQT---------- 201 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~---------- 201 (1342)
+..+++||+..++++..+|. .+++++|+||||||+||||||+++|++.. .+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhccccccc
Confidence 34568899999999998876 46799999999999999999999999876 67998888742 111
Q ss_pred -cC-HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhh
Q 000704 202 -PD-LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1342)
Q Consensus 202 -~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v 279 (1342)
++ ...++++++.++........ .....+.+++. +||+||||||||+..+|+.+.......++||+||||||++.+
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~--~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~v 336 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI--YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHF 336 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc--CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHH
Confidence 01 12344455544422211110 01234555665 899999999999999999988766666789999999999999
Q ss_pred hhhhcCcCccEEecCCCHHHHHHHHHHHhCCC-CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHh
Q 000704 280 LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNC-VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1342)
Q Consensus 280 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~ 358 (1342)
+. .++..++|+++.++++|||+||+++|+.. .+++++++++++|+++|+|+|||++++|++|++++..+|+.++++++
T Consensus 337 l~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~ 415 (1153)
T PLN03210 337 LR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLR 415 (1153)
T ss_pred HH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 98 47778899999999999999999999643 34557889999999999999999999999999998877999999988
Q ss_pred hcccCCcchHHHHHhHHHHHhcccCcchhHHHHHhhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHHhH
Q 000704 359 FSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGL 438 (1342)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L 438 (1342)
... ..+|. .+|++||++|++++.|.||+++|+|+. ++.++. +..|+|.+.... +. .++.|
T Consensus 416 ~~~-----~~~I~-~~L~~SYd~L~~~~~k~~Fl~ia~ff~--~~~~~~-v~~~l~~~~~~~--------~~---~l~~L 475 (1153)
T PLN03210 416 NGL-----DGKIE-KTLRVSYDGLNNKKDKAIFRHIACLFN--GEKVND-IKLLLANSDLDV--------NI---GLKNL 475 (1153)
T ss_pred hCc-----cHHHH-HHHHHhhhccCccchhhhhheehhhcC--CCCHHH-HHHHHHhcCCCc--------hh---ChHHH
Confidence 321 13477 999999999987446999999999998 556543 556766654431 11 18899
Q ss_pred hhccccccCCccchhhhhhHHHHHHHHhhhccc-------EEecc-cccc-CCccccccCceEEEecccCCCCCCC--c-
Q 000704 439 KDTCLLHDDDTADWFSMLGFVRNVAISIASINL-------MVRND-ALIE-WPNKDMLKNCIAIFLHDINTGELPE--G- 506 (1342)
Q Consensus 439 ~~~~l~~~~~~~~~~~mhdlv~~~a~~~~~~~~-------~~~~~-~~~~-~~~~~~~~~~r~lsl~~~~~~~l~~--~- 506 (1342)
+++||++.. .+.++|||++|+||+.++++.. +..+. .... .......++++.+++....+.++.- .
T Consensus 476 ~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a 553 (1153)
T PLN03210 476 VDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA 553 (1153)
T ss_pred HhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence 999999875 3579999999999999987621 11110 0000 0011123456777665444332211 1
Q ss_pred -CCCCCccEEEccCCC------CCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC-ccccC
Q 000704 507 -LEYPHLTSLCMNPKD------PFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGN 578 (1342)
Q Consensus 507 -~~~~~Lr~L~l~~~~------~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~ 578 (1342)
..+++|+.|.+..+. ....+|..+..-...||+|++.++.+..+|..+ ...+|+.|++++|.+..+ ..+..
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 145555555554331 112234332111234666666666555565555 345566666666555544 44555
Q ss_pred CCCCCEEEccCC-CCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChh
Q 000704 579 LKNLEILSLCCS-DIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1342)
Q Consensus 579 L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1342)
+++|++|+|+++ .+..+| .++.+++|++|++++|..+..+|.. ++++++|+.|++++|.....++ .
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp-----------~ 699 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILP-----------T 699 (1153)
T ss_pred CCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccC-----------C
Confidence 666666666543 344554 3555566666666665555555555 5556666666655543221111 1
Q ss_pred hhcCCCCCCEEEeeccCCCCCCchhhhccccceEEEEccccCCCCCCCCcceeeccCCCccchHHHHhhhcccceecccC
Q 000704 658 ELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDE 737 (1342)
Q Consensus 658 ~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~ 737 (1342)
.+ ++++|+.|+++++
T Consensus 700 ~i-~l~sL~~L~Lsgc---------------------------------------------------------------- 714 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGC---------------------------------------------------------------- 714 (1153)
T ss_pred cC-CCCCCCEEeCCCC----------------------------------------------------------------
Confidence 11 3445555555443
Q ss_pred CCCcccccccccCCCccccccccccccCceEEeccCccccccccccccceeeccccccccchh--c--ccccccccccce
Q 000704 738 VPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKIC--D--GLLTAEFFSKLR 813 (1342)
Q Consensus 738 ~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~--~--~~~~~~~~~~L~ 813 (1342)
...... +. ..++|++|++.++. +..++. ...+++|+.|.+.++....-+. . .......+++|+
T Consensus 715 -~~L~~~-p~----~~~nL~~L~L~~n~-i~~lP~------~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 715 -SRLKSF-PD----ISTNISWLDLDETA-IEEFPS------NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred -CCcccc-cc----ccCCcCeeecCCCc-cccccc------cccccccccccccccchhhccccccccchhhhhccccch
Confidence 222111 00 11334444443332 111110 0123444444444332111000 0 000112357899
Q ss_pred EEEEeeCCCcccccchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCCCCccccccccC
Q 000704 814 IIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLK 893 (1342)
Q Consensus 814 ~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 893 (1342)
.|.+.+|+.+..+|. .+.++++|+.|++++|..++.++. ...+++|+.|.+++|.++..++.
T Consensus 782 ~L~Ls~n~~l~~lP~--si~~L~~L~~L~Ls~C~~L~~LP~-------------~~~L~sL~~L~Ls~c~~L~~~p~--- 843 (1153)
T PLN03210 782 RLFLSDIPSLVELPS--SIQNLHKLEHLEIENCINLETLPT-------------GINLESLESLDLSGCSRLRTFPD--- 843 (1153)
T ss_pred heeCCCCCCccccCh--hhhCCCCCCEEECCCCCCcCeeCC-------------CCCccccCEEECCCCCccccccc---
Confidence 999999988888874 577899999999999998887762 12578999999999998877533
Q ss_pred CCCCCCCCCCCCcccccccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcccCcEEEE
Q 000704 894 SSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEI 973 (1342)
Q Consensus 894 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I 973 (1342)
..++|+.|+++++.+..++.. ...+++|+.|++.+|++|+.++. ....+++|+.|++
T Consensus 844 ----------------~~~nL~~L~Ls~n~i~~iP~s-----i~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l 900 (1153)
T PLN03210 844 ----------------ISTNISDLNLSRTGIEEVPWW-----IEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDF 900 (1153)
T ss_pred ----------------cccccCEeECCCCCCccChHH-----HhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeec
Confidence 146899999998887665432 23588999999999999998754 2467899999999
Q ss_pred ecccccccc
Q 000704 974 CHCTVLEEI 982 (1342)
Q Consensus 974 ~~c~~L~~l 982 (1342)
++|++|+.+
T Consensus 901 ~~C~~L~~~ 909 (1153)
T PLN03210 901 SDCGALTEA 909 (1153)
T ss_pred CCCcccccc
Confidence 999988765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.1e-41 Score=381.81 Aligned_cols=274 Identities=34% Similarity=0.488 Sum_probs=218.6
Q ss_pred hHHHHHHHHHHHcC--CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC-
Q 000704 144 RESILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC- 220 (1342)
Q Consensus 144 r~~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 220 (1342)
|+.++++|.++|.+ ++.++|+|+||||+||||||++++++...+.+|+.++||.++...+..++++.|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78899999999987 789999999999999999999999997788999999999999999999999999999987733
Q ss_pred ---CCChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhhhcCc-CccEEecCCC
Q 000704 221 ---EESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMHC-QNNYCVSVLN 296 (1342)
Q Consensus 221 ---~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~~-~~~~~l~~L~ 296 (1342)
..........+.+.+. ++++||||||||+...|+.+...++....|+|||||||+..++.. ++. ...+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~-~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGS-LGGTDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTT-HHSCEEEEECSS--
T ss_pred cccccccccccccchhhhc-cccceeeeeeecccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 2344456666777775 789999999999999999998888877789999999999998874 443 6789999999
Q ss_pred HHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCC-hhHHHHHHHHHhhcccCCc-chHHHHH
Q 000704 297 KEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLPIAILTVARTLRNKP-LFVWKKALQELRFSARNFT-GLEALLG 372 (1342)
Q Consensus 297 ~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~-~~~w~~~l~~l~~~~~~~~-~~~~~~~ 372 (1342)
++||++||++.++... ..+.+++.+++|+++|+|+||||+++|++|+.+. ..+|+.+++++.+...... ....++
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~- 237 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVF- 237 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHH-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9999999999997432 3455677899999999999999999999996654 3349999999885543332 245588
Q ss_pred hHHHHHhcccCcchhHHHHHhhccCCCCCCccHHHHHHHhhcccccccc
Q 000704 373 STIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDI 421 (1342)
Q Consensus 373 ~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~ 421 (1342)
.++.+||+.||++ +|+||+|||+||+++.++.+.|+++|+++|+++..
T Consensus 238 ~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 238 SALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999997 89999999999996667779999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.7e-30 Score=345.09 Aligned_cols=514 Identities=20% Similarity=0.191 Sum_probs=282.2
Q ss_pred CceEEEecccCCCCC-CCcC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCC-cCCccCCCCCCCCEEEc
Q 000704 489 NCIAIFLHDINTGEL-PEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLPNLESLCL 565 (1342)
Q Consensus 489 ~~r~lsl~~~~~~~l-~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L 565 (1342)
+++.+.+.++.+... +..+ .+++|++|++++|.....+|..+|.++++||+|+|++|.+. .+|. +.+.+|++|+|
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~L 147 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDL 147 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEEC
Confidence 577777777765443 3222 67888888888887766788777778888888888888776 4453 56778888888
Q ss_pred cCCCCCC-C-ccccCCCCCCEEEccCCCCc-ccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccc
Q 000704 566 DQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEW 642 (1342)
Q Consensus 566 ~~~~i~~-l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 642 (1342)
++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~- 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS- 225 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC-
Confidence 8887753 2 56888888888888888765 67777888888888888887755556666 788888888888877665
Q ss_pred cccccccccCCCChhhhcCCCCCCEEEeeccCCCCCCchhhhccccceEEEEccccCCCCCCCCcceeeccCCCccchHH
Q 000704 643 EFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDE 722 (1342)
Q Consensus 643 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 722 (1342)
......++.+++|+.|++++|......
T Consensus 226 ----------~~~p~~l~~l~~L~~L~L~~n~l~~~~------------------------------------------- 252 (968)
T PLN00113 226 ----------GEIPYEIGGLTSLNHLDLVYNNLTGPI------------------------------------------- 252 (968)
T ss_pred ----------CcCChhHhcCCCCCEEECcCceecccc-------------------------------------------
Confidence 223456777788888887766543110
Q ss_pred HHhhhcccceecccCCCCcccccccccCCCccccccccccccCceEEeccCccccccccccccceeeccccccccchhcc
Q 000704 723 IIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDG 802 (1342)
Q Consensus 723 ~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~ 802 (1342)
...+ ..+++|++|+++++.....++. ....+++|+.|.+.++.-...+
T Consensus 253 ----------------------p~~l--~~l~~L~~L~L~~n~l~~~~p~-----~l~~l~~L~~L~Ls~n~l~~~~--- 300 (968)
T PLN00113 253 ----------------------PSSL--GNLKNLQYLFLYQNKLSGPIPP-----SIFSLQKLISLDLSDNSLSGEI--- 300 (968)
T ss_pred ----------------------ChhH--hCCCCCCEEECcCCeeeccCch-----hHhhccCcCEEECcCCeeccCC---
Confidence 0001 1234444444443321110000 0011233333333332110000
Q ss_pred cccccccccceEEEEeeCCCcccccchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCC
Q 000704 803 LLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFL 882 (1342)
Q Consensus 803 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 882 (1342)
+.....+++|+.|++.+|.-...+| ..+..+++|+.|++++|.-...++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~p----------------------------- 349 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEIP----------------------------- 349 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCC--hhHhcCCCCCEEECcCCCCcCcCC-----------------------------
Confidence 0012335566666665543322222 234455556666555543211111
Q ss_pred CCccccccccCCCCCCCCCCCCCcccccccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHH
Q 000704 883 PQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIV 962 (1342)
Q Consensus 883 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~ 962 (1342)
.....+++|+.|++++|.+....... ...+++|+.|++.+|. +....+ ..+
T Consensus 350 -----------------------~~l~~~~~L~~L~Ls~n~l~~~~p~~----~~~~~~L~~L~l~~n~-l~~~~p-~~~ 400 (968)
T PLN00113 350 -----------------------KNLGKHNNLTVLDLSTNNLTGEIPEG----LCSSGNLFKLILFSNS-LEGEIP-KSL 400 (968)
T ss_pred -----------------------hHHhCCCCCcEEECCCCeeEeeCChh----HhCcCCCCEEECcCCE-ecccCC-HHH
Confidence 01112445555555555433211111 1124556666666653 222222 234
Q ss_pred hhcccCcEEEEecccccccccccccccccccccccCcccccccccCccccccccccccccCCccceeEeecCCceeeecc
Q 000704 963 RNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTS 1042 (1342)
Q Consensus 963 ~~l~~L~~L~I~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~ 1042 (1342)
..+++|+.|++++|.--..++. ....+++|+.|+++++.-...++.... .+++|+.|++++|.-...+|.
T Consensus 401 ~~~~~L~~L~L~~n~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~p~ 470 (968)
T PLN00113 401 GACRSLRRVRLQDNSFSGELPS--------EFTKLPLVYFLDISNNNLQGRINSRKW--DMPSLQMLSLARNKFFGGLPD 470 (968)
T ss_pred hCCCCCCEEECcCCEeeeECCh--------hHhcCCCCCEEECcCCcccCccChhhc--cCCCCcEEECcCceeeeecCc
Confidence 5666677777666652111111 112256666666666543322222111 346677777777654433321
Q ss_pred ccccCCCcchhcccccccccchhhhhhhcccceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcC
Q 000704 1043 EFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFK 1122 (1342)
Q Consensus 1043 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~ 1122 (1342)
. ...++|+.|++++|+++......+ ..+++|+.|++++|.+....+..+.+++
T Consensus 471 ~-------------------------~~~~~L~~L~ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 471 S-------------------------FGSKRLENLDLSRNQFSGAVPRKL--GSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred c-------------------------cccccceEEECcCCccCCccChhh--hhhhccCEEECcCCcceeeCChHHcCcc
Confidence 0 013467777777776654332222 2466777777777776655555666677
Q ss_pred CccEEEEEeeceeeeccchhhhhhhccccccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCC
Q 000704 1123 NLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVP 1197 (1342)
Q Consensus 1123 ~L~~L~l~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~ 1197 (1342)
+|++|+|+.|.++...+ ..+..+++|+.|++++|.-...+ |..+..+++|+.|++++|+....+|.
T Consensus 524 ~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~Ls~N~l~~~~----p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIP-----ASFSEMPVLSQLDLSQNQLSGEI----PKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred CCCEEECCCCcccccCC-----hhHhCcccCCEEECCCCcccccC----ChhHhcCcccCEEeccCCcceeeCCC
Confidence 77777777666554322 23445666777777666543333 44555566677777766665555554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.7e-30 Score=345.27 Aligned_cols=517 Identities=18% Similarity=0.155 Sum_probs=312.7
Q ss_pred CCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCC-cCCccCC-CCCCCCEEEccCCCCCCCccccCCCCCCEEEc
Q 000704 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSL 587 (1342)
Q Consensus 510 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L 587 (1342)
.+++.|++++|.....++.. |..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+......+.+++|++|++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~-~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSA-IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChH-HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEEC
Confidence 57899999998876666654 689999999999999997 7888765 99999999999999876534478999999999
Q ss_pred cCCCCc-ccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCC
Q 000704 588 CCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLT 666 (1342)
Q Consensus 588 s~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~ 666 (1342)
++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. ...+..++++++|+
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L~ 215 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSLK 215 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCcc
Confidence 999987 78999999999999999999855677776 899999999999998775 23456788899999
Q ss_pred EEEeeccCCCCCCchhhhccccceEEEEccccCCCCCCCCcceeeccCCCccchHHHHhhhcccceecccCCCCcccccc
Q 000704 667 TLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLY 746 (1342)
Q Consensus 667 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~ 746 (1342)
.|+++++...... ..
T Consensus 216 ~L~L~~n~l~~~~-----------------------------------------------------------------p~ 230 (968)
T PLN00113 216 WIYLGYNNLSGEI-----------------------------------------------------------------PY 230 (968)
T ss_pred EEECcCCccCCcC-----------------------------------------------------------------Ch
Confidence 9998876543110 00
Q ss_pred cccCCCccccccccccccCceEEeccCccccccccccccceeeccccccccchhcccccccccccceEEEEeeCCCcccc
Q 000704 747 ELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNI 826 (1342)
Q Consensus 747 ~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 826 (1342)
.+ ..+++|++|+++++.....++ ...+.+++|+.|.+.+|.-...+
T Consensus 231 ~l--~~l~~L~~L~L~~n~l~~~~p--------------------------------~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 231 EI--GGLTSLNHLDLVYNNLTGPIP--------------------------------SSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred hH--hcCCCCCEEECcCceeccccC--------------------------------hhHhCCCCCCEEECcCCeeeccC
Confidence 01 245667777776654211110 01233455666666554322222
Q ss_pred cchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCCCCccccccccCCCCCCCCCCCCCc
Q 000704 827 FSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPKPLFN 906 (1342)
Q Consensus 827 ~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~ 906 (1342)
| ..+..+++|++|++++|.-...++.
T Consensus 277 p--~~l~~l~~L~~L~Ls~n~l~~~~p~---------------------------------------------------- 302 (968)
T PLN00113 277 P--PSIFSLQKLISLDLSDNSLSGEIPE---------------------------------------------------- 302 (968)
T ss_pred c--hhHhhccCcCEEECcCCeeccCCCh----------------------------------------------------
Confidence 2 2345566677777666542111110
Q ss_pred ccccccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcccCcEEEEecccccccccccc
Q 000704 907 ERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKE 986 (1342)
Q Consensus 907 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~c~~L~~l~~~~ 986 (1342)
....+++|+.|++++|.+..... .....+++|+.|++++|.-...+ | ..+..+++|+.|++++|.--..++.
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-p-~~l~~~~~L~~L~Ls~n~l~~~~p~-- 374 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIP----VALTSLPRLQVLQLWSNKFSGEI-P-KNLGKHNNLTVLDLSTNNLTGEIPE-- 374 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCC----hhHhcCCCCCEEECcCCCCcCcC-C-hHHhCCCCCcEEECCCCeeEeeCCh--
Confidence 00114455555555554332111 11224678888888887533233 2 3467788888888887762212211
Q ss_pred cccccccccccCcccccccccCccccccccccccccCCccceeEeecCCceeeeccccccCCCcchhcccccccccchhh
Q 000704 987 RGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFL 1066 (1342)
Q Consensus 987 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1066 (1342)
....+++|+.|.+.+++....++.... .+++|+.|++++|.--..+|.
T Consensus 375 ------~~~~~~~L~~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~------------------------ 422 (968)
T PLN00113 375 ------GLCSSGNLFKLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPS------------------------ 422 (968)
T ss_pred ------hHhCcCCCCEEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECCh------------------------
Confidence 111256777777777654444443222 346777777776643222211
Q ss_pred hhhhcccceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCccEEEEEeeceeeeccchhhhhh
Q 000704 1067 VEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKH 1146 (1342)
Q Consensus 1067 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~ 1146 (1342)
....+++|+.|++++|+++......+ ..+++|+.|++++|.+....+..+ ..++|+.|+++.|.+....+ ..
T Consensus 423 ~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~-----~~ 494 (968)
T PLN00113 423 EFTKLPLVYFLDISNNNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVP-----RK 494 (968)
T ss_pred hHhcCCCCCEEECcCCcccCccChhh--ccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccC-----hh
Confidence 01235667777777776554332211 235667777777766443322222 24566666666555543322 12
Q ss_pred hccccccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEecCCCCccccchhhhh
Q 000704 1147 AGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAK 1226 (1342)
Q Consensus 1147 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~C~~l~~l~~~~~~~ 1226 (1342)
+..+++|++|++++|.-...+ |..+..+++|+.|+|++|.-....|..++.+++|++|++++|.-...+ + ....
T Consensus 495 ~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p-~~l~ 568 (968)
T PLN00113 495 LGSLSELMQLKLSENKLSGEI----PDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI-P-KNLG 568 (968)
T ss_pred hhhhhccCEEECcCCcceeeC----ChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC-C-hhHh
Confidence 334566666666665332222 344455666666666666655555666666666666666665433233 2 2234
Q ss_pred ccccccEEEEcccccchhhh
Q 000704 1227 SLVQLMQLRIDGCKMITEII 1246 (1342)
Q Consensus 1227 ~l~sL~~L~i~~c~~l~~~~ 1246 (1342)
.+++|+.|++++|+-...+|
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred cCcccCEEeccCCcceeeCC
Confidence 55666666666665433333
No 6
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=3.6e-24 Score=248.66 Aligned_cols=141 Identities=28% Similarity=0.379 Sum_probs=116.3
Q ss_pred ecccCCCCCCCcC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC
Q 000704 495 LHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI 573 (1342)
Q Consensus 495 l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l 573 (1342)
+++...+.+|..+ ....+..|++..|.. ...|-.+..+.-+|++||+++|.+...|..|..+.+|+.|+++.|.|...
T Consensus 5 ~s~~~l~~ip~~i~~~~~~~~ln~~~N~~-l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v 83 (1081)
T KOG0618|consen 5 ASDEQLELIPEQILNNEALQILNLRRNSL-LSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV 83 (1081)
T ss_pred cccccCcccchhhccHHHHHhhhcccccc-ccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence 3444555566554 334477777777754 44455555666679999999999999999999999999999999999876
Q ss_pred -ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCC
Q 000704 574 -AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1342)
Q Consensus 574 -~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1342)
.+++++.+|++|+|.+|.+..+|.++..+++|++|++++|. ...+|.- +..++.+..+..++|
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred chhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 78999999999999999999999999999999999999987 7788876 788888888887776
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=2.3e-20 Score=246.96 Aligned_cols=293 Identities=21% Similarity=0.288 Sum_probs=186.3
Q ss_pred ccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcccCcEEEEecccccccccccccccc
Q 000704 911 FPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEE 990 (1342)
Q Consensus 911 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~c~~L~~l~~~~~~~~ 990 (1342)
+.+|++|++.++.+..+|.... .+++|+.|++++|..++.++. +..+++|+.|++++|..+..++..
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~-----~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~s----- 676 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH-----SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSS----- 676 (1153)
T ss_pred ccCCcEEECcCccccccccccc-----cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchh-----
Confidence 5678888888888777776532 578888888888888877642 466888888888888888776532
Q ss_pred cccccccCcccccccccCccccccccccccccCCccceeEeecCCceeeeccccccCCCcchhcccccccccchhhhhhh
Q 000704 991 ATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKV 1070 (1342)
Q Consensus 991 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1342)
...+++|+.|.+++|.+++.+|... .+++|+.|++++|..++.+|. .
T Consensus 677 ---i~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~---------------------------~ 723 (1153)
T PLN03210 677 ---IQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD---------------------------I 723 (1153)
T ss_pred ---hhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------------------------c
Confidence 2237888888888888888887654 458888888888887766543 1
Q ss_pred cccceeeeecccccceeccCCCCccccccccEEEEecCCCC-------CCcHHHHhhcCCccEEEEE-eeceeeeccchh
Q 000704 1071 GSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSD-------NFPICFLQYFKNLEKLELR-WSSYKQIFSYKE 1142 (1342)
Q Consensus 1071 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~-------~~~~~~l~~l~~L~~L~l~-c~~l~~l~~~~~ 1142 (1342)
+++|++|++++|.++.++.. ..+++|+.|.+.+|... .+++.....+++|+.|+++ |+.+..+|.
T Consensus 724 ~~nL~~L~L~~n~i~~lP~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--- 796 (1153)
T PLN03210 724 STNISWLDLDETAIEEFPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS--- 796 (1153)
T ss_pred cCCcCeeecCCCcccccccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---
Confidence 34677777777766655432 13566666666664421 1111122223566666666 555555443
Q ss_pred hhhhhccccccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEecCCCCccccch
Q 000704 1143 AEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTS 1222 (1342)
Q Consensus 1143 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~C~~l~~l~~~ 1222 (1342)
+++.+++|+.|++++|..+..+|. .. .+++|+.|++++|..+..+|.. .++|+.|++++ ++++.+|.
T Consensus 797 ---si~~L~~L~~L~Ls~C~~L~~LP~----~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n~i~~iP~- 863 (1153)
T PLN03210 797 ---SIQNLHKLEHLEIENCINLETLPT----GI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-TGIEEVPW- 863 (1153)
T ss_pred ---hhhCCCCCCEEECCCCCCcCeeCC----CC-CccccCEEECCCCCcccccccc---ccccCEeECCC-CCCccChH-
Confidence 344566666666666666666532 21 4566666666666666665543 35666666665 45655532
Q ss_pred hhhhccccccEEEEcccccchhhhcCCCcccccccccccccccccccccccceee
Q 000704 1223 STAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFY 1277 (1342)
Q Consensus 1223 ~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~ 1277 (1342)
....+++|+.|++++|++++.++.. ...+++|+.|++.+|++|+.++
T Consensus 864 -si~~l~~L~~L~L~~C~~L~~l~~~-------~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 -WIEKFSNLSFLDMNGCNNLQRVSLN-------ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred -HHhcCCCCCEEECCCCCCcCccCcc-------cccccCCCeeecCCCccccccc
Confidence 2456666666666666666665432 1245666666666666666544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-20 Score=207.84 Aligned_cols=153 Identities=20% Similarity=0.310 Sum_probs=106.9
Q ss_pred CCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC--ccccCCCCCCEEE
Q 000704 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILS 586 (1342)
Q Consensus 509 ~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~ 586 (1342)
.+..++|++++|.. ..+...+|.++++|+.+.+..|.+..+|...+...||+.|+|.+|.|..+ +.+..+..||.||
T Consensus 77 p~~t~~LdlsnNkl-~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKL-SHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeecccccc-ccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45566777777755 44444556778888888888888777777666667788888888877776 5677777778888
Q ss_pred ccCCCCcccCcc-cCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCC
Q 000704 587 LCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1342)
Q Consensus 587 Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1342)
||.|.|+++|.. +..=.++++|+|++|. ++.+-.+.|..+.+|-+|.++.|.++ ......+++|++|
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-----------tLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-----------TLPQRSFKRLPKL 223 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc-----------ccCHHHhhhcchh
Confidence 887777777653 5555677777777766 66776666777777777777777665 3344566667777
Q ss_pred CEEEeeccC
Q 000704 666 TTLEIHIRD 674 (1342)
Q Consensus 666 ~~L~l~~~~ 674 (1342)
+.|++..|.
T Consensus 224 ~~LdLnrN~ 232 (873)
T KOG4194|consen 224 ESLDLNRNR 232 (873)
T ss_pred hhhhccccc
Confidence 766665543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.80 E-value=8.9e-23 Score=214.83 Aligned_cols=127 Identities=18% Similarity=0.167 Sum_probs=85.6
Q ss_pred eeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCccEEEEEeeceeeeccchhhhhhhccccccc
Q 000704 1075 EELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIK 1154 (1342)
Q Consensus 1075 ~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~~~~l~~L~ 1154 (1342)
+.+.+++|.+...+.. ...+++|..|++++|.+..+|.++ +++..|+.|+|+.|.+..+|.. . ......
T Consensus 415 T~l~lsnn~isfv~~~---l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~------~-y~lq~l 483 (565)
T KOG0472|consen 415 TDLVLSNNKISFVPLE---LSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC------L-YELQTL 483 (565)
T ss_pred HHHHhhcCccccchHH---HHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH------H-hhHHHH
Confidence 3445666655544322 235788999999999999988854 5577899999998888877651 1 122222
Q ss_pred eeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEecCCCCc
Q 000704 1155 SLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLK 1217 (1342)
Q Consensus 1155 ~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~C~~l~ 1217 (1342)
+..+..-.++.+++ +.++..+..|..|++.+.+ ++.+|+.++++++|++|++++-| +.
T Consensus 484 Etllas~nqi~~vd---~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 484 ETLLASNNQIGSVD---PSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP-FR 541 (565)
T ss_pred HHHHhccccccccC---hHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc-cC
Confidence 33333445666664 3456678888888887744 77888888889999999988843 44
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.2e-20 Score=203.47 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=73.3
Q ss_pred cccceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCccEEEEEeeceeeeccchhhhhhhccc
Q 000704 1071 GSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKL 1150 (1342)
Q Consensus 1071 ~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~~~~l 1150 (1342)
.++|++|++++|+++.++.+.+. .+..|++|.+++|.++.+....+..+++|++|+++.|.+.-.... +...+..+
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~--~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl 391 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFR--VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGL 391 (873)
T ss_pred cccceeEeccccccccCChhHHH--HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccc
Confidence 34555555555555555544333 355666666666666666666666666666666665555544332 22233346
Q ss_pred cccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEec
Q 000704 1151 THIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWY 1212 (1342)
Q Consensus 1151 ~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~ 1212 (1342)
++|+.|.+.+. +++++++..+.+ +++||+|++.+.+-...-|..+..+ .|++|.+..
T Consensus 392 ~~LrkL~l~gN-qlk~I~krAfsg---l~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 392 PSLRKLRLTGN-QLKSIPKRAFSG---LEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred hhhhheeecCc-eeeecchhhhcc---CcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 66666666553 466665444333 5666666666655444444444444 666665543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=2.6e-22 Score=211.29 Aligned_cols=171 Identities=27% Similarity=0.362 Sum_probs=102.8
Q ss_pred EEecccCCCCCCCcC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCC
Q 000704 493 IFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILG 571 (1342)
Q Consensus 493 lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~ 571 (1342)
+.+..|.+..+.+.. .+..|.+|.+++|.. ..+|..+ +.+..+..|+.++|++..+|+.++.+..|+.|+.++|.+.
T Consensus 50 lils~N~l~~l~~dl~nL~~l~vl~~~~n~l-~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 50 LILSHNDLEVLREDLKNLACLTVLNVHDNKL-SQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhhccCchhhccHhhhcccceeEEEeccchh-hhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee
Confidence 334444444443333 455666666666654 4455543 5666666666666666667766766667777766666665
Q ss_pred CC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccc
Q 000704 572 DI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650 (1342)
Q Consensus 572 ~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (1342)
.+ ++|+.+..|+.|+..+|++..+|.+++++.+|..|++.++. +..+|++.+. ++.|++|+...|-+.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--------- 196 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--------- 196 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh---------
Confidence 54 66666667776666666666777667666666666666665 6666666333 666666665544332
Q ss_pred cCCCChhhhcCCCCCCEEEeeccCCCCCC
Q 000704 651 RNNASLQELSILSHLTTLEIHIRDAVILP 679 (1342)
Q Consensus 651 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1342)
..+.+++.+.+|..|++..|.+..+|
T Consensus 197 ---tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 ---TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ---cCChhhcchhhhHHHHhhhcccccCC
Confidence 33455666666665555555544333
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=9.4e-21 Score=220.53 Aligned_cols=462 Identities=22% Similarity=0.231 Sum_probs=280.6
Q ss_pred ceEEEecccCCCCCCCc--CCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccC
Q 000704 490 CIAIFLHDINTGELPEG--LEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQ 567 (1342)
Q Consensus 490 ~r~lsl~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~ 567 (1342)
+.++++..|..-..|-. -+.-+|++|++++|.. ...|..+ ..+.+|+.|.++.|.|..+|.+++++.+|++|+|.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-~~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-SSFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeecccccc-ccCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 34445555544443321 1455699999998875 5666654 778999999999999999999999999999999999
Q ss_pred CCCCCC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccc
Q 000704 568 CILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1342)
Q Consensus 568 ~~i~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 646 (1342)
|.+..+ .++..+++|++||+++|.+...|.-+..+..+..+..++|..+..++. .. .+++++..+.+.
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-----~~-ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ-----TS-IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhcc-----cc-chhhhhhhhhcc-----
Confidence 998776 689999999999999999999999999999999999999854544443 22 667776665543
Q ss_pred cccccCCCChhhhcCCCCCCEEEeeccCCCCCCchhhhccccceEEEEccccCCCCCCCCcceeeccCCCccchHHHHhh
Q 000704 647 LNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMN 726 (1342)
Q Consensus 647 ~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 726 (1342)
...+.++..+.+ .|++..|...... . ..
T Consensus 170 ------~~~~~~i~~l~~--~ldLr~N~~~~~d-l-------------------------------------------s~ 197 (1081)
T KOG0618|consen 170 ------GSFLIDIYNLTH--QLDLRYNEMEVLD-L-------------------------------------------SN 197 (1081)
T ss_pred ------cchhcchhhhhe--eeecccchhhhhh-h-------------------------------------------hh
Confidence 222344444444 5777666543110 0 01
Q ss_pred hcccceecccCCCCcccccccccCCCccccccccccccCceEEeccCccccccccccccceeeccccccccchhcccccc
Q 000704 727 LKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTA 806 (1342)
Q Consensus 727 l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~ 806 (1342)
+.+|+.++..... +..+. ..-++|+.|+...++-.+ ....
T Consensus 198 ~~~l~~l~c~rn~-----ls~l~-~~g~~l~~L~a~~n~l~~----------------------------------~~~~ 237 (1081)
T KOG0618|consen 198 LANLEVLHCERNQ-----LSELE-ISGPSLTALYADHNPLTT----------------------------------LDVH 237 (1081)
T ss_pred ccchhhhhhhhcc-----cceEE-ecCcchheeeeccCccee----------------------------------eccc
Confidence 2222222211100 00000 011444444444433211 1122
Q ss_pred cccccceEEEEeeCCCcccccchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCCCCcc
Q 000704 807 EFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLT 886 (1342)
Q Consensus 807 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 886 (1342)
+.-.+|+.++++. .++..+| .++..+++|+.+.+.+..- ..++. ....
T Consensus 238 p~p~nl~~~dis~-n~l~~lp--~wi~~~~nle~l~~n~N~l-~~lp~------------ri~~---------------- 285 (1081)
T KOG0618|consen 238 PVPLNLQYLDISH-NNLSNLP--EWIGACANLEALNANHNRL-VALPL------------RISR---------------- 285 (1081)
T ss_pred cccccceeeecch-hhhhcch--HHHHhcccceEecccchhH-HhhHH------------HHhh----------------
Confidence 3345677777766 4566666 5677777777777765432 22221 0001
Q ss_pred ccccccCCCCCCCCCCCCCcccccccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcc
Q 000704 887 SFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFV 966 (1342)
Q Consensus 887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~ 966 (1342)
..+|+.|.+..|.+..+..... .+.+|++|++.. .+|.+++. ..+.-+.
T Consensus 286 ------------------------~~~L~~l~~~~nel~yip~~le-----~~~sL~tLdL~~-N~L~~lp~-~~l~v~~ 334 (1081)
T KOG0618|consen 286 ------------------------ITSLVSLSAAYNELEYIPPFLE-----GLKSLRTLDLQS-NNLPSLPD-NFLAVLN 334 (1081)
T ss_pred ------------------------hhhHHHHHhhhhhhhhCCCccc-----ccceeeeeeehh-ccccccch-HHHhhhh
Confidence 2334444444444333322111 345566666655 34555432 2222222
Q ss_pred -cCcEEEEecccccccccccccccccccccccCcccccccccCccccccccccccccCCccceeEeecCCceeeeccccc
Q 000704 967 -QLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFL 1045 (1342)
Q Consensus 967 -~L~~L~I~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~ 1045 (1342)
+|..|+.+..+ +...+. .....++.|+.|.+.+. .|++-+-.... .++.|+.|+++. +.|..+|.
T Consensus 335 ~~l~~ln~s~n~-l~~lp~-------~~e~~~~~Lq~LylanN-~Ltd~c~p~l~-~~~hLKVLhLsy-NrL~~fpa--- 400 (1081)
T KOG0618|consen 335 ASLNTLNVSSNK-LSTLPS-------YEENNHAALQELYLANN-HLTDSCFPVLV-NFKHLKVLHLSY-NRLNSFPA--- 400 (1081)
T ss_pred HHHHHHhhhhcc-cccccc-------ccchhhHHHHHHHHhcC-cccccchhhhc-cccceeeeeecc-cccccCCH---
Confidence 25555554333 433321 11123677788877775 33332221111 456777777765 44554433
Q ss_pred cCCCcchhcccccccccchhhhhhhcccceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCcc
Q 000704 1046 SFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLE 1125 (1342)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~ 1125 (1342)
+....+..|++|++|+|.++.++... ..+..|++|...+|.+..+| .+..++.|+
T Consensus 401 --------------------s~~~kle~LeeL~LSGNkL~~Lp~tv---a~~~~L~tL~ahsN~l~~fP--e~~~l~qL~ 455 (1081)
T KOG0618|consen 401 --------------------SKLRKLEELEELNLSGNKLTTLPDTV---ANLGRLHTLRAHSNQLLSFP--ELAQLPQLK 455 (1081)
T ss_pred --------------------HHHhchHHhHHHhcccchhhhhhHHH---HhhhhhHHHhhcCCceeech--hhhhcCcce
Confidence 11233677999999999999888653 35889999999999999999 566799999
Q ss_pred EEEEEeeceeeeccchhhhhhhccc-cccceeeeCCCCCc
Q 000704 1126 KLELRWSSYKQIFSYKEAEKHAGKL-THIKSLKLWELSDL 1164 (1342)
Q Consensus 1126 ~L~l~c~~l~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~L 1164 (1342)
.++++||+++.+.... ..+ +.|++|+++|...+
T Consensus 456 ~lDlS~N~L~~~~l~~------~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPE------ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred EEecccchhhhhhhhh------hCCCcccceeeccCCccc
Confidence 9999999998765422 123 78999999998754
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.72 E-value=1.4e-19 Score=199.98 Aligned_cols=363 Identities=20% Similarity=0.252 Sum_probs=178.3
Q ss_pred ccEEEccCCCCC-CCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC-ccccCCCCCCEEEccC
Q 000704 512 LTSLCMNPKDPF-LHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLCC 589 (1342)
Q Consensus 512 Lr~L~l~~~~~~-~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~ 589 (1342)
.|-.++++|.++ ...|.++ ..|++++.|.|..+++..+|+.++.|.+|+.|.+++|++..+ ..++.|+.||.++++.
T Consensus 9 VrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhH-HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 344445555444 2344443 555555555555555555555555555555555555555444 4455555555555555
Q ss_pred CCCc--ccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCE
Q 000704 590 SDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTT 667 (1342)
Q Consensus 590 ~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 667 (1342)
|+++ .+|.+|-+|..|..|||++|+ +..+|.+ +..-+++-.|++++|++.. ..-.-+-+|+.|-.
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~-LE~AKn~iVLNLS~N~Iet-----------IPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTN-LEYAKNSIVLNLSYNNIET-----------IPNSLFINLTDLLF 154 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhh-hhhcchh-hhhhcCcEEEEcccCcccc-----------CCchHHHhhHhHhh
Confidence 5544 455555555555555555554 5555555 5555555555555554431 01122334444445
Q ss_pred EEeeccCCCCCCchhhhccccceEEEEccccCCCCCCCCcceeeccCCCccchHHHHhhhcccceecccCCCCccccccc
Q 000704 668 LEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYE 747 (1342)
Q Consensus 668 L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 747 (1342)
|+++.|....+|+.+ ..+.+|+.|.|++.+ +..
T Consensus 155 LDLS~NrLe~LPPQ~------------------------------------------RRL~~LqtL~Ls~NP-----L~h 187 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQI------------------------------------------RRLSMLQTLKLSNNP-----LNH 187 (1255)
T ss_pred hccccchhhhcCHHH------------------------------------------HHHhhhhhhhcCCCh-----hhH
Confidence 555555554444332 112233333333322 111
Q ss_pred ccCCC---ccccccccccccCceEEeccCccccccccccccceeeccccccccchhcccccccccccceEEEEeeCCCcc
Q 000704 748 LDRKG---LPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLK 824 (1342)
Q Consensus 748 l~~~~---l~~L~~L~l~~~~~~~~i~~~~~~~~~~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 824 (1342)
+...+ +.+|..|++++..... ..+ +.....+.||..++++. +++.
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl-----------~N~--------------------Ptsld~l~NL~dvDlS~-N~Lp 235 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTL-----------DNI--------------------PTSLDDLHNLRDVDLSE-NNLP 235 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchh-----------hcC--------------------CCchhhhhhhhhccccc-cCCC
Confidence 11112 2233333333322110 001 11233455555555543 4444
Q ss_pred cccchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCCCCccccccccCCCCCCCCCCCC
Q 000704 825 NIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPKPL 904 (1342)
Q Consensus 825 ~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~ 904 (1342)
.+|. .+-.+++|..|.+++.. ++++.. +.....+|++|++++. .|+.++
T Consensus 236 ~vPe--cly~l~~LrrLNLS~N~-iteL~~------------~~~~W~~lEtLNlSrN-QLt~LP--------------- 284 (1255)
T KOG0444|consen 236 IVPE--CLYKLRNLRRLNLSGNK-ITELNM------------TEGEWENLETLNLSRN-QLTVLP--------------- 284 (1255)
T ss_pred cchH--HHhhhhhhheeccCcCc-eeeeec------------cHHHHhhhhhhccccc-hhccch---------------
Confidence 4443 34556677777766643 222211 1123455666666552 233321
Q ss_pred Ccccccccccceeeccccccc--ccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcccCcEEEEecccccccc
Q 000704 905 FNERVVFPNLETLELYAINTE--RIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEI 982 (1342)
Q Consensus 905 ~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~c~~L~~l 982 (1342)
.....+++|++|.+.++.+. .++++ ...+..|+.+...+ ++|.-+ +.++..++.|+.|.++.+. |..+
T Consensus 285 -~avcKL~kL~kLy~n~NkL~FeGiPSG-----IGKL~~Levf~aan-N~LElV--PEglcRC~kL~kL~L~~Nr-LiTL 354 (1255)
T KOG0444|consen 285 -DAVCKLTKLTKLYANNNKLTFEGIPSG-----IGKLIQLEVFHAAN-NKLELV--PEGLCRCVKLQKLKLDHNR-LITL 354 (1255)
T ss_pred -HHHhhhHHHHHHHhccCcccccCCccc-----hhhhhhhHHHHhhc-cccccC--chhhhhhHHHHHhcccccc-eeec
Confidence 12334677888877776532 22221 12345555555555 345443 3456778888888887554 5555
Q ss_pred cccccccccccccccCcccccccccCcccccccc
Q 000704 983 VSKERGEEATATFVFPKVTYLKLCNLSELITFYP 1016 (1342)
Q Consensus 983 ~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 1016 (1342)
+.. +..+|-|+.|++++.|+|.--|.
T Consensus 355 Pea--------IHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 355 PEA--------IHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhh--------hhhcCCcceeeccCCcCccCCCC
Confidence 432 33478888888888888865443
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.69 E-value=9e-19 Score=193.76 Aligned_cols=194 Identities=24% Similarity=0.303 Sum_probs=156.5
Q ss_pred cccCceEEEecccCCCCCCCcC-CCCCccEEEccCCCC-CCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEE
Q 000704 486 MLKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDP-FLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESL 563 (1342)
Q Consensus 486 ~~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~-~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L 563 (1342)
..+++.|+++.+|....+...+ .++.||++++..|+. ...+|.++| ++..|.+|||++|.+.+.|..+..-+++-+|
T Consensus 53 ~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVL 131 (1255)
T KOG0444|consen 53 RLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVL 131 (1255)
T ss_pred HHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEE
Confidence 3567899999998877765544 899999999998875 357898886 6899999999999999999999999999999
Q ss_pred EccCCCCCCC--ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000704 564 CLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1342)
Q Consensus 564 ~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1342)
+|++|+|..+ +-+-+|..|-+||||+|.+..||..+.+|.+|++|+|++|+ +....-..+-.|++|++|.++++.-+
T Consensus 132 NLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 132 NLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch
Confidence 9999999887 56889999999999999999999999999999999999997 44333222556788999998887644
Q ss_pred ccccccccccCCCChhhhcCCCCCCEEEeeccCCCCCCchh-hhccccceE
Q 000704 642 WEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGL-FSQKLARYK 691 (1342)
Q Consensus 642 ~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~ 691 (1342)
....+..+..|.||+.++++.|+...+|.-+ ...+|.+|.
T Consensus 211 ----------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 211 ----------LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred ----------hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 1223456677778888888888877777654 344454443
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=3.7e-16 Score=145.80 Aligned_cols=166 Identities=27% Similarity=0.439 Sum_probs=141.2
Q ss_pred CCCCCcCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC-ccccCC
Q 000704 501 GELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNL 579 (1342)
Q Consensus 501 ~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L 579 (1342)
.++|..+.+++...|.+++|.. ..+|+.+ ..+.+|++|++++|.|.++|.+|+.++.||.|++.-|++..+ ..||.+
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl-~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKL-TVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred hhcccccchhhhhhhhcccCce-eecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 3455555677777788888765 4556654 789999999999999999999999999999999999988765 789999
Q ss_pred CCCCEEEccCCCCc--ccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChh
Q 000704 580 KNLEILSLCCSDIE--QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQ 657 (1342)
Q Consensus 580 ~~L~~L~Ls~~~i~--~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 657 (1342)
+.|++|||.+|++. .+|..|-.+..|+-|++++|. .+.+|++ +++|++||.|.+.+|.+. ..+.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lpk 167 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLPK 167 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCcH
Confidence 99999999998876 789999999999999999987 8889998 899999999999888764 3567
Q ss_pred hhcCCCCCCEEEeeccCCCCCCchh
Q 000704 658 ELSILSHLTTLEIHIRDAVILPKGL 682 (1342)
Q Consensus 658 ~L~~L~~L~~L~l~~~~~~~~~~~~ 682 (1342)
+++.++.|+.|+|.+|....+|+++
T Consensus 168 eig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 168 EIGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHHhcccceeeecChhh
Confidence 8999999999999999998888765
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=6.9e-15 Score=137.43 Aligned_cols=151 Identities=28% Similarity=0.431 Sum_probs=137.4
Q ss_pred ccCceEEEecccCCCCCCCcC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEc
Q 000704 487 LKNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1342)
Q Consensus 487 ~~~~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 565 (1342)
+..+.++.+++|.+..+|+.+ .+.+|++|++++|.. ..+|..+ +.++.||.|+++-|.+..+|..||.++-|++|||
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi-e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI-EELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh-hhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 456889999999999999887 899999999998876 6788775 8999999999999999999999999999999999
Q ss_pred cCCCCCC---CccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000704 566 DQCILGD---IAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1342)
Q Consensus 566 ~~~~i~~---l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1342)
.+|.+.+ +..|..+.-|+-|.|+.|.+.-+|.++++|++||.|.+++|. +-.+|.+ ++.|+.|++|++.+|.+.
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 9998854 367888899999999999999999999999999999999987 7789998 999999999999999875
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=3.6e-14 Score=150.65 Aligned_cols=121 Identities=25% Similarity=0.385 Sum_probs=60.2
Q ss_pred cEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcC-CccCCCCCCCCEEEccC-CCCCCC--ccccCCCCCCEEEcc
Q 000704 513 TSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQ-CILGDI--AIIGNLKNLEILSLC 588 (1342)
Q Consensus 513 r~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~-~~i~~l--~~i~~L~~L~~L~Ls 588 (1342)
..+.|..|.+ ..+|+..|+.+++||.|||++|.|+.+ |..|..|..|-.|-+-+ |+|+.+ ..|++|..|+-|.+.
T Consensus 70 veirLdqN~I-~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQI-SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCCc-ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 3344554443 455555566666666666666666544 55555555554444433 445444 345555555555554
Q ss_pred CCCCcccCc-ccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEc
Q 000704 589 CSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1342)
Q Consensus 589 ~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l 635 (1342)
-|.+..++. .+..|++|..|.+.+|. +..++.+.+..+..++++.+
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhh
Confidence 444443322 24445555555544443 44444444444444444444
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.29 E-value=1e-10 Score=155.48 Aligned_cols=293 Identities=17% Similarity=0.196 Sum_probs=178.7
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-cCHHHHHHHHHHHhC
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLG 216 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~ 216 (1342)
..+++-|....+.+-+ ....+++.|+|++|.||||++.++... ++.++|+++... .+...+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3356666654444422 246789999999999999999998853 236899999744 466777777777764
Q ss_pred CCCCC--------------CChHHHHHHHHHHHhc-CCcEEEEEcCCCCccc--c-cccCCCCCCCCCCcEEEEEecchh
Q 000704 217 LNFCE--------------ESDSERIMMLCNRLKR-EKKILVILDDIWTSLD--L-ERTGIPFGDVHRGCKILVTSRRRD 278 (1342)
Q Consensus 217 ~~~~~--------------~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~--~-~~l~~~l~~~~~gs~iliTtr~~~ 278 (1342)
..... ......+..+...+.. +.+++|||||+...++ . +.+...+.....+.++|||||...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 21111 1112233444455543 6899999999965421 1 122222223345678889999853
Q ss_pred hhhh-hc-CcCccEEec----CCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHH
Q 000704 279 VLVS-EM-HCQNNYCVS----VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKK 352 (1342)
Q Consensus 279 v~~~-~~-~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~ 352 (1342)
-... .. .......+. +|+.+|+.++|....|...+ .+.+.+|.+.++|.|+++..++..++...... ..
T Consensus 164 ~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~-~~ 238 (903)
T PRK04841 164 PLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL-HD 238 (903)
T ss_pred CCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch-hh
Confidence 2110 01 112345555 89999999999887764322 34567899999999999999988775443210 11
Q ss_pred HHHHHhhcccCCcchHHHHHhHHHHHhcccCcchhHHHHHhhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHH
Q 000704 353 ALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1342)
Q Consensus 353 ~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1342)
....+. .... ..+......-.|+.||++ .+..+...|+++. +.. .+...-. | . .+. .
T Consensus 239 ~~~~~~--~~~~---~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~---~~~-~l~~~l~--~----~---~~~----~ 295 (903)
T PRK04841 239 SARRLA--GINA---SHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRS---MND-ALIVRVT--G----E---ENG----Q 295 (903)
T ss_pred hhHhhc--CCCc---hhHHHHHHHHHHhcCCHH-HHHHHHHhccccc---CCH-HHHHHHc--C----C---CcH----H
Confidence 111111 0001 123312233447899997 8999999999986 332 1211100 1 0 011 2
Q ss_pred HHHHhHhhcccccc-CC-ccchhhhhhHHHHHHHHhh
Q 000704 433 ALVRGLKDTCLLHD-DD-TADWFSMLGFVRNVAISIA 467 (1342)
Q Consensus 433 ~~~~~L~~~~l~~~-~~-~~~~~~mhdlv~~~a~~~~ 467 (1342)
+.+++|.++++|.. .+ ...+|++|++++++++...
T Consensus 296 ~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 296 MRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 24889999998753 32 3347999999999998765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=1.5e-11 Score=150.52 Aligned_cols=252 Identities=18% Similarity=0.129 Sum_probs=137.0
Q ss_pred cceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhcccCcEEEEeccccccccccccccccccc
Q 000704 914 LETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATA 993 (1342)
Q Consensus 914 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~c~~L~~l~~~~~~~~~~~ 993 (1342)
-..|+++++.+..++... .++|+.|.+.+ ++++.++. .+++|++|+++++ +|+.++.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-------~~~L~~L~L~~-N~Lt~LP~-----lp~~Lk~LdLs~N-~LtsLP~--------- 259 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-------PAHITTLVIPD-NNLTSLPA-----LPPELRTLEVSGN-QLTSLPV--------- 259 (788)
T ss_pred CcEEEcCCCCCCcCCcch-------hcCCCEEEccC-CcCCCCCC-----CCCCCcEEEecCC-ccCcccC---------
Confidence 445666666665544321 13577777776 35666532 2567777777765 4665532
Q ss_pred ccccCcccccccccCccccccccccccccCCccceeEeecCCceeeeccccccCCCcchhcccccccccchhhhhhhccc
Q 000704 994 TFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSH 1073 (1342)
Q Consensus 994 ~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1073 (1342)
.+++|++|++.++. +..++. .+++|+.|+++++ +++.+|. .+++
T Consensus 260 --lp~sL~~L~Ls~N~-L~~Lp~-----lp~~L~~L~Ls~N-~Lt~LP~---------------------------~p~~ 303 (788)
T PRK15387 260 --LPPGLLELSIFSNP-LTHLPA-----LPSGLCKLWIFGN-QLTSLPV---------------------------LPPG 303 (788)
T ss_pred --cccccceeeccCCc-hhhhhh-----chhhcCEEECcCC-ccccccc---------------------------cccc
Confidence 14567777777663 444443 1245666666664 3433321 2456
Q ss_pred ceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCccEEEEEeeceeeeccchhhhhhhcccccc
Q 000704 1074 LEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHI 1153 (1342)
Q Consensus 1074 L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~~~~l~~L 1153 (1342)
|+.|++++|+++.++. ...+|+.|++++|.++.+|.. ..+|+.|+++.|.++.+|. .+++|
T Consensus 304 L~~LdLS~N~L~~Lp~------lp~~L~~L~Ls~N~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~---------lp~~L 364 (788)
T PRK15387 304 LQELSVSDNQLASLPA------LPSELCKLWAYNNQLTSLPTL----PSGLQELSVSDNQLASLPT---------LPSEL 364 (788)
T ss_pred cceeECCCCccccCCC------CcccccccccccCcccccccc----ccccceEecCCCccCCCCC---------CCccc
Confidence 7777777777666542 134567777777777666531 1467777777777766654 23456
Q ss_pred ceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEecCCCCccccchhhhhccccccE
Q 000704 1154 KSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQ 1233 (1342)
Q Consensus 1154 ~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~ 1233 (1342)
+.|+++++ .+..++. . .++|+.|++.++. ++.+|.. +++|+.|+++++ +++.+|. ...+|+.
T Consensus 365 ~~L~Ls~N-~L~~LP~----l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N-~LssIP~-----l~~~L~~ 426 (788)
T PRK15387 365 YKLWAYNN-RLTSLPA----L---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGN-RLTSLPM-----LPSGLLS 426 (788)
T ss_pred ceehhhcc-ccccCcc----c---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCC-cCCCCCc-----chhhhhh
Confidence 66666543 3444421 1 2356666666543 4455432 345666666663 4555532 1234555
Q ss_pred EEEcccccchhhhcCCCccccccccccccccccccc
Q 000704 1234 LRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLEN 1269 (1342)
Q Consensus 1234 L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~ 1269 (1342)
|+++++. ++.+|.. ...+++|+.|++.+
T Consensus 427 L~Ls~Nq-Lt~LP~s-------l~~L~~L~~LdLs~ 454 (788)
T PRK15387 427 LSVYRNQ-LTRLPES-------LIHLSSETTVNLEG 454 (788)
T ss_pred hhhccCc-ccccChH-------HhhccCCCeEECCC
Confidence 6665544 4444321 12345555555555
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=1.2e-10 Score=142.77 Aligned_cols=155 Identities=25% Similarity=0.291 Sum_probs=96.5
Q ss_pred eEEEecccCCCCCCCcCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCC
Q 000704 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCIL 570 (1342)
Q Consensus 491 r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i 570 (1342)
..+.+..+.+..+|..+ .++|+.|.+.+|.. ..+|. .+++|++|++++|.+..+|.. ..+|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~L-t~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNL-TSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcC-CCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 34566666666677655 24677777777654 34553 246777777777777777653 35677777777777
Q ss_pred CCCccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccc
Q 000704 571 GDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLE 650 (1342)
Q Consensus 571 ~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 650 (1342)
..++. -..+|+.|++++|.++.+|.. +++|++|++++|. +..+|.. . .+|+.|++++|.+..
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~~-------- 336 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLTS-------- 336 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCcccc--------
Confidence 66543 225677777777777777753 3567777777765 6666642 2 346666776665531
Q ss_pred cCCCChhhhcCCCCCCEEEeeccCCCCCC
Q 000704 651 RNNASLQELSILSHLTTLEIHIRDAVILP 679 (1342)
Q Consensus 651 ~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1342)
+..+ ..+|+.|++++|.+..+|
T Consensus 337 -----LP~l--p~~Lq~LdLS~N~Ls~LP 358 (788)
T PRK15387 337 -----LPTL--PSGLQELSVSDNQLASLP 358 (788)
T ss_pred -----cccc--ccccceEecCCCccCCCC
Confidence 0111 136777777777666554
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.22 E-value=4.2e-10 Score=132.82 Aligned_cols=287 Identities=21% Similarity=0.196 Sum_probs=184.3
Q ss_pred HHHHHHHcC-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCC---
Q 000704 149 NDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEES--- 223 (1342)
Q Consensus 149 ~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~--- 223 (1342)
.++++.|.+ .+.+.+.|..++|.|||||+.+..... ..=..+.|.++++.. ++..+.+.++..++.-.+...
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a 101 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEA 101 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHH
Confidence 345566653 478999999999999999999998733 234578999987665 688888888888864333221
Q ss_pred -----------hHHHHHHHHHHHhc-CCcEEEEEcCCCCc---ccccccCCCCCCCCCCcEEEEEecchhhhhh--hcCc
Q 000704 224 -----------DSERIMMLCNRLKR-EKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLVS--EMHC 286 (1342)
Q Consensus 224 -----------~~~~~~~l~~~l~~-~k~~LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~--~~~~ 286 (1342)
-...+..+...+.. .++..+||||-.-. .--..+...+.....+-.+|||||...-... ..-.
T Consensus 102 ~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 102 QTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh
Confidence 12234444544443 47889999995433 2122233333344568899999999864331 0001
Q ss_pred CccEEecC----CCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHhhccc
Q 000704 287 QNNYCVSV----LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSAR 362 (1342)
Q Consensus 287 ~~~~~l~~----L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~~~~~ 362 (1342)
....+++. ++.+|+-++|....+...+ +.-.+.+.+...|.+-|+..++-.+++..+.+ ..+..+.
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~--q~~~~Ls---- 251 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAE--QSLRGLS---- 251 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHH--HHhhhcc----
Confidence 22333333 8999999999887654333 33377899999999999999999988443322 1111111
Q ss_pred CCcchHH-HHHhHHHHHhcccCcchhHHHHHhhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHHhHhhc
Q 000704 363 NFTGLEA-LLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDT 441 (1342)
Q Consensus 363 ~~~~~~~-~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~ 441 (1342)
+.+. +-+....--++.||++ +|..++-||+++. +. ++|+..-.+. +.+...+++|.++
T Consensus 252 ---G~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~-~eL~~~Ltg~-------------~ng~amLe~L~~~ 310 (894)
T COG2909 252 ---GAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FN-DELCNALTGE-------------ENGQAMLEELERR 310 (894)
T ss_pred ---chHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hh-HHHHHHHhcC-------------CcHHHHHHHHHhC
Confidence 1111 1112333345899997 9999999999988 11 2232211111 1123358999999
Q ss_pred ccccc--CCccchhhhhhHHHHHHHHhhhc
Q 000704 442 CLLHD--DDTADWFSMLGFVRNVAISIASI 469 (1342)
Q Consensus 442 ~l~~~--~~~~~~~~mhdlv~~~a~~~~~~ 469 (1342)
+||.. .+..++|+.|.++.||.+.--+.
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 99863 35667999999999999875443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=6.2e-11 Score=146.42 Aligned_cols=137 Identities=17% Similarity=0.349 Sum_probs=95.9
Q ss_pred ceEEEecccCCCCCCCcCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCC
Q 000704 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI 569 (1342)
Q Consensus 490 ~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~ 569 (1342)
...+.+.++.+..+|..+ .++|+.|++++|.. ..+|..++ .+|++|++++|.+..+|..+. .+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~L-tsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNEL-KSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCC-CcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 456777777777777654 35788888888765 46776553 478888888888888877654 368888888887
Q ss_pred CCCCc-cccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCccc
Q 000704 570 LGDIA-IIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVE 641 (1342)
Q Consensus 570 i~~l~-~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 641 (1342)
+..++ .+. .+|++|++++|.+..+|..+. .+|++|++++|. +..+|.. +. .+|++|++++|.+.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT 317 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc
Confidence 77663 332 478888888888888877664 478888888875 6677764 32 46777777776654
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.21 E-value=1.5e-11 Score=154.24 Aligned_cols=129 Identities=27% Similarity=0.364 Sum_probs=103.6
Q ss_pred cCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCC--CCCCc--cccCCCCCCEEEccCC-CCcccCcccCCCCccc
Q 000704 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCI--LGDIA--IIGNLKNLEILSLCCS-DIEQLPREIGELTQLK 606 (1342)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~--i~~l~--~i~~L~~L~~L~Ls~~-~i~~LP~~i~~L~~L~ 606 (1342)
.+....|...+.++.+..++.+..+ +.|++|-+.++. +..++ .|..++.|++|||++| ++.+||.+|++|.+||
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4456788888888888877766544 379999998885 55553 4889999999999976 6889999999999999
Q ss_pred EEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEeeccC
Q 000704 607 LLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1342)
Q Consensus 607 ~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 674 (1342)
+|+++++. +..+|.+ +++|.+|++|++..+... ......+..|++|++|.+....
T Consensus 599 yL~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeeccc
Confidence 99999987 8999999 999999999999876543 1113455568999999987654
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=3.2e-13 Score=144.97 Aligned_cols=144 Identities=19% Similarity=0.237 Sum_probs=69.7
Q ss_pred cCCccEEEEE-eeceeeeccchhhhhhhccccccceeeeCCCCCcchhhccCCcc-chhhcccceeeeecccCccc--cC
Q 000704 1121 FKNLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKL-DSVVENLEMLEVWWCDNLVN--LV 1196 (1342)
Q Consensus 1121 l~~L~~L~l~-c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~-~~~l~~L~~L~i~~C~~l~~--l~ 1196 (1342)
+..|+.|..+ |.++.+.... .-.++..+|+.|.+++|.++... ++.. ..+++.|+.+++.+|..... +-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~----aLg~~~~~L~~l~l~~c~~fsd~---~ft~l~rn~~~Le~l~~e~~~~~~d~tL~ 365 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLW----ALGQHCHNLQVLELSGCQQFSDR---GFTMLGRNCPHLERLDLEECGLITDGTLA 365 (483)
T ss_pred hhHhhhhcccCCCCCchHHHH----HHhcCCCceEEEeccccchhhhh---hhhhhhcCChhhhhhcccccceehhhhHh
Confidence 4556666666 5554443221 12234567777777777765543 1222 23456666666666654432 12
Q ss_pred CCCcccCcccEEEEecCCCCccccch---hhhhccccccEEEEcccccchhhhcCCCccccccccccccccccccccccc
Q 000704 1197 PSSPSFRNLITLEVWYCKGLKNLVTS---STAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESL 1273 (1342)
Q Consensus 1197 ~~~~~l~sL~~L~i~~C~~l~~l~~~---~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L 1273 (1342)
....+++.|+.|.+++|..+++.... ........|+.|.+.+|+.+.+.. .+.+..+++|+.+++.+|.+.
T Consensus 366 sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~------Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 366 SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT------LEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH------HHHHhhCcccceeeeechhhh
Confidence 22345566666666666655544211 111233445555555555544321 112234445555555555554
Q ss_pred ceee
Q 000704 1274 TSFY 1277 (1342)
Q Consensus 1274 ~~l~ 1277 (1342)
..=+
T Consensus 440 tk~~ 443 (483)
T KOG4341|consen 440 TKEA 443 (483)
T ss_pred hhhh
Confidence 4433
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.14 E-value=1.5e-12 Score=140.00 Aligned_cols=274 Identities=18% Similarity=0.142 Sum_probs=169.5
Q ss_pred ccccceEEEEeeCCCcccccchhHHhccCCccEEEEeeccchhhHhhcCCCCCCCCCccccccccccceEecCCCCCccc
Q 000704 808 FFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTS 887 (1342)
Q Consensus 808 ~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 887 (1342)
..|++++|.+.+|.++++-........++.|++|.+..|.+++........ ..+++|++|.++.||.+..
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la----------~gC~kL~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA----------EGCRKLKYLNLSWCPQISG 231 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH----------HhhhhHHHhhhccCchhhc
Confidence 467777777777777776655555667778888888888777766543211 2477888888888887655
Q ss_pred cccccCCCCCCCCCCCCCcccccccccceeecccccccccccCCCCCCCCCCCCCcEEEEecccccccccchhHHhhccc
Q 000704 888 FYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQ 967 (1342)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~ 967 (1342)
=. ...-......++++...||.-.+.-. ........+.+.++++..|..+++.....+...+..
T Consensus 232 ~g--------------v~~~~rG~~~l~~~~~kGC~e~~le~--l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 232 NG--------------VQALQRGCKELEKLSLKGCLELELEA--LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred Cc--------------chHHhccchhhhhhhhcccccccHHH--HHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 00 00000113345666666664221100 000111345566777778888887644455667888
Q ss_pred CcEEEEecccccccccccccccccccccccCcccccccccCccccccccccccccCCccceeEeecCCceeeeccccccC
Q 000704 968 LQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSF 1047 (1342)
Q Consensus 968 L~~L~I~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~ 1047 (1342)
|+.|..++|.++...+-.. .....++|+.|.+..|..+++.........|+.|+.+++.+|......
T Consensus 296 lq~l~~s~~t~~~d~~l~a------Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~------- 362 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWA------LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG------- 362 (483)
T ss_pred hhhhcccCCCCCchHHHHH------HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-------
Confidence 8999999888765543221 122368899999999988887776666667888999988888654321
Q ss_pred CCcchhcccccccccchhhhhhhcccceeeeeccc-ccceeccCCCC--ccccccccEEEEecCC-CCCCcHHHHhhcCC
Q 000704 1048 PKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGK-DITMIREGRLP--TYLFQNLKILEVVNDK-SDNFPICFLQYFKN 1123 (1342)
Q Consensus 1048 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~--~~~l~~L~~L~l~~c~-~~~~~~~~l~~l~~ 1123 (1342)
.+.+....++.|++|.+++| .++......+. ..+...|..|++++|+ ++....+.+..+++
T Consensus 363 ---------------tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~ 427 (483)
T KOG4341|consen 363 ---------------TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN 427 (483)
T ss_pred ---------------hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc
Confidence 22334456788899999988 55543211111 1345667778888887 34444455666677
Q ss_pred ccEEEEE-eecee
Q 000704 1124 LEKLELR-WSSYK 1135 (1342)
Q Consensus 1124 L~~L~l~-c~~l~ 1135 (1342)
|+++++- |..++
T Consensus 428 Leri~l~~~q~vt 440 (483)
T KOG4341|consen 428 LERIELIDCQDVT 440 (483)
T ss_pred cceeeeechhhhh
Confidence 7776666 55544
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.12 E-value=6.3e-09 Score=116.42 Aligned_cols=182 Identities=17% Similarity=0.155 Sum_probs=117.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHH----
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCN---- 233 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~---- 233 (1342)
....++.|+|++|+||||+++.+++...... + ..+|+ +....+..++++.|+..++..............+..
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIE 117 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 3456899999999999999999998865321 1 22333 334457889999999998876544333333333332
Q ss_pred HHhcCCcEEEEEcCCCCcc--cccccCC---CCCCCCCCcEEEEEecchhhhhh--------hcCcCccEEecCCCHHHH
Q 000704 234 RLKREKKILVILDDIWTSL--DLERTGI---PFGDVHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEEA 300 (1342)
Q Consensus 234 ~l~~~k~~LlvlDdv~~~~--~~~~l~~---~l~~~~~gs~iliTtr~~~v~~~--------~~~~~~~~~l~~L~~~~~ 300 (1342)
....+++.++|+||++... .++.+.. .-.+......|++|....-.... .......+++.+++.+|.
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2335788999999998863 3444332 11112223355666554321110 011234678999999999
Q ss_pred HHHHHHHhC---CCCCCccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000704 301 WSLFSKVVG---NCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1342)
Q Consensus 301 ~~lf~~~~~---~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l 342 (1342)
.+++...+. ......-..+..+.|++.++|.|..|..++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999988763 211122235788999999999999999888876
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.09 E-value=5.6e-10 Score=138.08 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=131.9
Q ss_pred cccCceEEEecccCCCCCCCcCCCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEc
Q 000704 486 MLKNCIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCL 565 (1342)
Q Consensus 486 ~~~~~r~lsl~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L 565 (1342)
++..++.+.+.+|.+..+|... .++|++|++++|.. ..+|..++ ..|+.|+|++|.+..+|..+. .+|++|++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L-tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL-TSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc-ccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 4567999999999999998766 46999999999876 57787653 479999999999999998775 58999999
Q ss_pred cCCCCCCCc-cccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccc
Q 000704 566 DQCILGDIA-IIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEF 644 (1342)
Q Consensus 566 ~~~~i~~l~-~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 644 (1342)
++|.+..++ .+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + .++|+.|++++|.+..
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-- 339 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTS-- 339 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCcccc--
Confidence 999998763 343 589999999999999997664 479999999987 7788865 3 3689999999987651
Q ss_pred cccccccCCCChhhhcCCCCCCEEEeeccCCCCCC
Q 000704 645 EGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1342)
Q Consensus 645 ~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1342)
....+ .++|+.|++++|.+..+|
T Consensus 340 ----------LP~~l--~~sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 340 ----------LPASL--PPELQVLDVSKNQITVLP 362 (754)
T ss_pred ----------CChhh--cCcccEEECCCCCCCcCC
Confidence 11122 258999999988766554
No 28
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.06 E-value=2.4e-08 Score=118.53 Aligned_cols=240 Identities=22% Similarity=0.161 Sum_probs=145.5
Q ss_pred cccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
+..+.||+++++++...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++.+|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 3458899999999998874 234456789999999999999999998764332334566776777788899999999
Q ss_pred HhCCC-CC--CCChHHHHHHHHHHHhc-CCcEEEEEcCCCCcc------cccccCCCCCCCCCCcE--EEEEecchhhhh
Q 000704 214 QLGLN-FC--EESDSERIMMLCNRLKR-EKKILVILDDIWTSL------DLERTGIPFGDVHRGCK--ILVTSRRRDVLV 281 (1342)
Q Consensus 214 ~l~~~-~~--~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~------~~~~l~~~l~~~~~gs~--iliTtr~~~v~~ 281 (1342)
++... .. ..+..+....+.+.+.+ +++.+||+|+++... .+..+..... ...+++ ||.++....+..
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcchhh
Confidence 98652 11 12233445555666543 466899999997642 1222222111 122333 566666544332
Q ss_pred h------hcCcCccEEecCCCHHHHHHHHHHHhCC-----CCCCccHHHHHHHHHHHhCCChHHHHHHHHHhc-----CC
Q 000704 282 S------EMHCQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDPDLQTVAIQVANECGGLPIAILTVARTLR-----NK 345 (1342)
Q Consensus 282 ~------~~~~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~-----~~ 345 (1342)
. ..-....+.+.+++.++..+++..++.. ..++..++.+++..+...|..+.|+.++-.+.. ++
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 1 0111346799999999999999988721 122233333444443334567777777654321 11
Q ss_pred Ch---hHHHHHHHHHhhcccCCcchHHHHHhHHHHHhcccCcchhHHHHHh
Q 000704 346 PL---FVWKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELKLTFLL 393 (1342)
Q Consensus 346 ~~---~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk~cfl~ 393 (1342)
.. ...+.+++... .....-.+..||.+ ++.|++
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~~--~k~~L~ 303 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPLH--EKLLLR 303 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCHH--HHHHHH
Confidence 11 11444444432 14445567899986 444544
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.95 E-value=2.2e-09 Score=117.79 Aligned_cols=193 Identities=20% Similarity=0.250 Sum_probs=103.4
Q ss_pred ccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH---------
Q 000704 141 IESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI--------- 211 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i--------- 211 (1342)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..+. ..+ .++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 6899999999999988666778999999999999999999997742 122 34444443333221 12221
Q ss_pred -HHHhC----CCC-------CCCChHHHHHHHHHHHhc-CCcEEEEEcCCCCcc-cc-------cccCC---CCCCCCCC
Q 000704 212 -ADQLG----LNF-------CEESDSERIMMLCNRLKR-EKKILVILDDIWTSL-DL-------ERTGI---PFGDVHRG 267 (1342)
Q Consensus 212 -~~~l~----~~~-------~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~-~~-------~~l~~---~l~~~~~g 267 (1342)
.+.+. ... ...........+.+.+.+ +++.+||+||+.... .. ..+.. ......+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 11121 100 011122344555555553 356999999986654 11 11111 11122333
Q ss_pred cEEEEEecchhhhhh-------hcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 268 CKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 268 s~iliTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
+ +|+++........ ..+....+.+++|+.+++++++...+.....-+.-++..++|+..+||.|..|.-
T Consensus 158 ~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 S-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp E-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred e-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4 4455444433321 2344456999999999999999997643211112345579999999999998754
No 30
>PF05729 NACHT: NACHT domain
Probab=98.94 E-value=5.1e-09 Score=107.72 Aligned_cols=143 Identities=21% Similarity=0.259 Sum_probs=92.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEEEEEecCCcCHH---HHHHHHHHHhCCCCCCCChHHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLK---RIRREIADQLGLNFCEESDSERIMMLCN 233 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 233 (1342)
+++.|+|.+|+||||+++.++.+...... +...+|+..+...... .+...|.......... .......
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-----~~~~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP-----IEELLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh-----hHHHHHH
Confidence 57999999999999999999988875443 4466677766544332 3444444443322111 0112223
Q ss_pred HHhcCCcEEEEEcCCCCccc---------ccccC-CCCCC-CCCCcEEEEEecchhhh--hhhcCcCccEEecCCCHHHH
Q 000704 234 RLKREKKILVILDDIWTSLD---------LERTG-IPFGD-VHRGCKILVTSRRRDVL--VSEMHCQNNYCVSVLNKEEA 300 (1342)
Q Consensus 234 ~l~~~k~~LlvlDdv~~~~~---------~~~l~-~~l~~-~~~gs~iliTtr~~~v~--~~~~~~~~~~~l~~L~~~~~ 300 (1342)
.+.+.+++++|+|++++... +..+. ..+.. ..++.+|+||+|..... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33457999999999876632 11111 11222 24689999999987762 21344446899999999999
Q ss_pred HHHHHHHh
Q 000704 301 WSLFSKVV 308 (1342)
Q Consensus 301 ~~lf~~~~ 308 (1342)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998865
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=1.3e-09 Score=109.26 Aligned_cols=109 Identities=31% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCCCCCEEEccCCCCCCCcccc-CCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEE
Q 000704 556 HLPNLESLCLDQCILGDIAIIG-NLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELY 634 (1342)
Q Consensus 556 ~L~~Lr~L~L~~~~i~~l~~i~-~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~ 634 (1342)
+..++|.|+|++|.|..++.++ .+.+|+.|++++|.|+.++ .+..|++|++|++++|. ++.++.+....+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEE
Confidence 3334455555555555554444 3455555555555555543 34455555555555544 4444433112355555555
Q ss_pred ccCCcccccccccccccCCCChhhhcCCCCCCEEEeeccCCC
Q 000704 635 LGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAV 676 (1342)
Q Consensus 635 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~ 676 (1342)
+++|.+. ....+..|+.+++|+.|++.+|+..
T Consensus 95 L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS-------------SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCC----------ChHHhHHHHcCCCcceeeccCCccc
Confidence 5555443 1122345555666666666655543
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-10 Score=124.69 Aligned_cols=132 Identities=27% Similarity=0.395 Sum_probs=94.8
Q ss_pred ccccCCccccccCceEEEecccCCCCCCCcC--CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecC-CCCCcCCc-
Q 000704 477 ALIEWPNKDMLKNCIAIFLHDINTGELPEGL--EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTR-MKLLTLPS- 552 (1342)
Q Consensus 477 ~~~~~~~~~~~~~~r~lsl~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~-~~i~~lp~- 552 (1342)
+..++|. +.+.....|.+..|.|..+|+.. .+++||.|++++|.+. .|.++.|.+++.|-.|-+.+ |+|+.+|.
T Consensus 57 GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 57 GLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 4445553 45677888899999999999876 7899999999998874 44445578888877776666 88888885
Q ss_pred cCCCCCCCCEEEccCCCCCCC--ccccCCCCCCEEEccCCCCcccCc-ccCCCCcccEEec
Q 000704 553 SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPR-EIGELTQLKLLDL 610 (1342)
Q Consensus 553 ~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L 610 (1342)
.|++|..|+-|.+.-|++..+ ..+..|++|..|.+..|.+..++. .+..+..++++.+
T Consensus 135 ~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhl 195 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHL 195 (498)
T ss_pred HhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhh
Confidence 478888888888877777655 566667777777766666666655 3555555555543
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=1.2e-09 Score=109.31 Aligned_cols=130 Identities=26% Similarity=0.276 Sum_probs=48.4
Q ss_pred cCCCCccEEEecCCCCCcCCccCC-CCCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCccc-CCCCcccEEe
Q 000704 532 AGMPKLRVLVLTRMKLLTLPSSFC-HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKLLD 609 (1342)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i-~~L~~L~~L~ 609 (1342)
.+...+|.|+|.++.|..+. .++ .+.+|+.|+|++|.|+.++.+..|++|++|++++|.|+.++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 45556788888888887663 465 57788888888888888888888888888888888888776555 3578888888
Q ss_pred ccCCCCCCccCc-cccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEee
Q 000704 610 LSNCSKLKVIPP-NVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIH 671 (1342)
Q Consensus 610 L~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~ 671 (1342)
+++|. +..+.. ..++.+++|++|++.+|.+.. ....-...+..+++|+.||-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~--------~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE--------KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGG--------STTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccc--------hhhHHHHHHHHcChhheeCCE
Confidence 88776 444322 226778888888888876541 112223456677888887653
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.86 E-value=1.2e-06 Score=102.74 Aligned_cols=196 Identities=20% Similarity=0.221 Sum_probs=121.9
Q ss_pred cccchHHHHHHHHHHHc----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcC-CCc---ceEEEEEecCCcCHHHHHHHH
Q 000704 140 FIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIF---DEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.+.||++++++|..++. ......+.|+|++|+|||++|+.+++..... ... -..+|+......+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 58899999999999886 2344679999999999999999999876421 111 145677777777788999999
Q ss_pred HHHhC---CCCCC--CChHHHHHHHHHHHh-cCCcEEEEEcCCCCcc-c----ccccCCCC-CCCC--CCcEEEEEecch
Q 000704 212 ADQLG---LNFCE--ESDSERIMMLCNRLK-REKKILVILDDIWTSL-D----LERTGIPF-GDVH--RGCKILVTSRRR 277 (1342)
Q Consensus 212 ~~~l~---~~~~~--~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~~-~----~~~l~~~l-~~~~--~gs~iliTtr~~ 277 (1342)
++++. ..... .+..+....+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|...
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 99883 32221 123334455555554 2567899999997762 1 12221110 1111 223445555433
Q ss_pred hhhhh---hc-C--cCccEEecCCCHHHHHHHHHHHhC---C-CCCCccHHHHHHHHHHHhCCChHHH
Q 000704 278 DVLVS---EM-H--CQNNYCVSVLNKEEAWSLFSKVVG---N-CVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 278 ~v~~~---~~-~--~~~~~~l~~L~~~~~~~lf~~~~~---~-~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
..... .. . ....+.+.+++.++..+++..++. . ..-.++..+...+++....|-|..+
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~a 243 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKA 243 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHH
Confidence 32111 01 0 124689999999999999998873 1 1122333334455666777888544
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=3.4e-10 Score=115.93 Aligned_cols=137 Identities=19% Similarity=0.190 Sum_probs=119.0
Q ss_pred cCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcccCCCCcccEEecc
Q 000704 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1342)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~ 611 (1342)
...+.|..|||++|.|+.+-+++.-++.+|+|++++|.+..+.++..|++|+.||||+|.+.++-..=.+|-|.++|.|.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 34567899999999999998899899999999999999999988999999999999999999888777889999999999
Q ss_pred CCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEeeccCCCCCCch
Q 000704 612 NCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKG 681 (1342)
Q Consensus 612 ~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~ 681 (1342)
+|. +..+.. +++|-+|..|++.+|.+. .......+++|+.|..|.+.+|.+..++..
T Consensus 361 ~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccchH
Confidence 986 777665 899999999999999875 233567889999999999999988766543
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=3.2e-10 Score=126.63 Aligned_cols=186 Identities=26% Similarity=0.378 Sum_probs=148.8
Q ss_pred ceEEEecccCCCCCCCcC-CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCC
Q 000704 490 CIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQC 568 (1342)
Q Consensus 490 ~r~lsl~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~ 568 (1342)
.....++.|.+.++|... .+-.|..+.+..|.+ ..+|..+ .++..|.+|+|+.|.+..+|..++.|. |++|-+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~-r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCI-RTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccc-eecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 445566777788888766 566778888877765 5566654 788999999999999999999888775 899999999
Q ss_pred CCCCC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCccccccccc
Q 000704 569 ILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGL 647 (1342)
Q Consensus 569 ~i~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 647 (1342)
+++.+ +.|+.+..|..||.++|.+..+|..++.|.+|+.|.++.|+ +..+|++ +..| .|..|+++.|++.
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis------ 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKIS------ 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCcee------
Confidence 99876 78898999999999999999999999999999999999987 7888888 6644 4889999988875
Q ss_pred ccccCCCChhhhcCCCCCCEEEeeccCCCCCCchhh-hccccceEEE
Q 000704 648 NLERNNASLQELSILSHLTTLEIHIRDAVILPKGLF-SQKLARYKIL 693 (1342)
Q Consensus 648 ~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~~~~~-~~~L~~l~~~ 693 (1342)
..+-.+.+|++|++|.+.+|....-|..+. ..++.-++.+
T Consensus 225 ------~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 225 ------YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred ------ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 345688899999999999999888777763 3344444433
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.78 E-value=4.1e-07 Score=103.63 Aligned_cols=273 Identities=13% Similarity=0.028 Sum_probs=146.1
Q ss_pred cccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1342)
..+|+|+++.++.+..++. ......+.++|++|+|||+||+.+++.... .| ..+..+......++. ..+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~~~~~~l~-~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPALEKPGDLA-AIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchhcCchhHH-HHH
Confidence 3568999999999988876 233556889999999999999999987652 22 122222111222222 222
Q ss_pred HHhCCCC----CC-C-ChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhhhc-C
Q 000704 213 DQLGLNF----CE-E-SDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM-H 285 (1342)
Q Consensus 213 ~~l~~~~----~~-~-~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~-~ 285 (1342)
..++... ++ + -.....+.+...+ ++.+..+|+|+..+...|.. +++ +.+-|..||+...+..... .
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHHhh
Confidence 3332211 00 0 0111122232233 35666677777666554432 222 2556667777655443211 1
Q ss_pred cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHhhcccCCc
Q 000704 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNFT 365 (1342)
Q Consensus 286 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~~~~~~~~ 365 (1342)
....+++++++.+|..+++.+.++.... .--.+....|++.|+|.|..+..++..+ |..+.. ........+
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~-~~~~~it~~ 220 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV-RGQKIINRD 220 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH-cCCCCcCHH
Confidence 2346899999999999999998853211 1124567889999999997665554432 222110 000001111
Q ss_pred chHHHHHhHHHHHhcccCcchhHHHHH-hhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHH-hHhhccc
Q 000704 366 GLEALLGSTIELIYNYLEGEELKLTFL-LCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVR-GLKDTCL 443 (1342)
Q Consensus 366 ~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~l 443 (1342)
-....+ ..+...|..++.++ +..+. ..+.++.+ +..++++-... |. +..+.+ ..++ .|++++|
T Consensus 221 ~v~~~l-~~l~~~~~~l~~~~-~~~L~al~~~~~~~-~~~~~~ia~~l---g~--~~~~~~-------~~~e~~Li~~~l 285 (305)
T TIGR00635 221 IALKAL-EMLMIDELGLDEID-RKLLSVLIEQFQGG-PVGLKTLAAAL---GE--DADTIE-------DVYEPYLLQIGF 285 (305)
T ss_pred HHHHHH-HHhCCCCCCCCHHH-HHHHHHHHHHhCCC-cccHHHHHHHh---CC--CcchHH-------HhhhHHHHHcCC
Confidence 122233 33555677787763 44444 55666542 34443332211 11 111222 2256 5899999
Q ss_pred cccC
Q 000704 444 LHDD 447 (1342)
Q Consensus 444 ~~~~ 447 (1342)
+...
T Consensus 286 i~~~ 289 (305)
T TIGR00635 286 LQRT 289 (305)
T ss_pred cccC
Confidence 9743
No 38
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.78 E-value=4.3e-07 Score=103.98 Aligned_cols=276 Identities=12% Similarity=0.018 Sum_probs=145.7
Q ss_pred CCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 136 EGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.....|+|+++.++.+..++. ......+.|+|++|+||||+|+.+++..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 346679999999988877764 2345678899999999999999999987522 2 1222211 111122223
Q ss_pred HHHHhCCCC----CC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhhhc-
Q 000704 211 IADQLGLNF----CE-ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM- 284 (1342)
Q Consensus 211 i~~~l~~~~----~~-~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~- 284 (1342)
++..+.... ++ +......++......++.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHHH
Confidence 333332111 00 00001111122222224555666666544332211 112 2455666777554433111
Q ss_pred CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHhhcccCC
Q 000704 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNF 364 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~~~~~~~ 364 (1342)
.....+++++++.++..+++.+.++.... .--.+.+..|++.|+|.|-.+..+...+. .|..+. .......
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~---~~~~I~~ 240 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK---GDGVITK 240 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---CCCCCCH
Confidence 11346899999999999999998853211 12245688999999999965544443321 111110 0001111
Q ss_pred cchHHHHHhHHHHHhcccCcchhHHHHH-hhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHH-hHhhcc
Q 000704 365 TGLEALLGSTIELIYNYLEGEELKLTFL-LCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVR-GLKDTC 442 (1342)
Q Consensus 365 ~~~~~~~~~~l~~sy~~L~~~~lk~cfl-~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~-~L~~~~ 442 (1342)
......+ ..+...|..|++.+ +..+. ....|+.+ .+.++.+-. -+-.+..+++++ ++ .|++.+
T Consensus 241 ~~v~~~l-~~~~~~~~~l~~~~-~~~l~~~~~~~~~~-~~~~~~~a~-----~lg~~~~~~~~~-------~e~~Li~~~ 305 (328)
T PRK00080 241 EIADKAL-DMLGVDELGLDEMD-RKYLRTIIEKFGGG-PVGLDTLAA-----ALGEERDTIEDV-------YEPYLIQQG 305 (328)
T ss_pred HHHHHHH-HHhCCCcCCCCHHH-HHHHHHHHHHcCCC-ceeHHHHHH-----HHCCCcchHHHH-------hhHHHHHcC
Confidence 1222344 55556677787763 55553 66667763 344444322 111222333333 44 678899
Q ss_pred ccccC
Q 000704 443 LLHDD 447 (1342)
Q Consensus 443 l~~~~ 447 (1342)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99744
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.68 E-value=9.5e-10 Score=122.99 Aligned_cols=156 Identities=24% Similarity=0.376 Sum_probs=131.4
Q ss_pred CCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC-ccccCCCCCCEEEc
Q 000704 509 YPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSL 587 (1342)
Q Consensus 509 ~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~L 587 (1342)
+.--...+++.|.+ ..+|..+ ..|..|..|.|+.|.+..+|..+++|..|.||+|+.|+++.+ ..++.| -|+.|-+
T Consensus 74 ltdt~~aDlsrNR~-~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRF-SELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIV 150 (722)
T ss_pred ccchhhhhcccccc-ccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEE
Confidence 33445567777765 6677764 778889999999999999999999999999999999999887 556655 4899999
Q ss_pred cCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCE
Q 000704 588 CCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTT 667 (1342)
Q Consensus 588 s~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~ 667 (1342)
++|+++.+|..|+-+..|.+||.+.|. +..+|.. ++.|.+|+.|.+..|.+. ..+.++..|+ |..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------------~lp~El~~Lp-Li~ 215 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------------DLPEELCSLP-LIR 215 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------------hCCHHHhCCc-eee
Confidence 999999999999999999999999987 8889998 899999999999888764 4556777654 889
Q ss_pred EEeeccCCCCCCchh
Q 000704 668 LEIHIRDAVILPKGL 682 (1342)
Q Consensus 668 L~l~~~~~~~~~~~~ 682 (1342)
|++++|.+..+|-.+
T Consensus 216 lDfScNkis~iPv~f 230 (722)
T KOG0532|consen 216 LDFSCNKISYLPVDF 230 (722)
T ss_pred eecccCceeecchhh
Confidence 999999988888654
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=4.4e-09 Score=121.47 Aligned_cols=138 Identities=24% Similarity=0.257 Sum_probs=88.4
Q ss_pred hhhcCCCCccEEEecCCCCC-----cCCccCCCCCCCCEEEccCCCCCC--------CccccCCCCCCEEEccCCCCc-c
Q 000704 529 NFFAGMPKLRVLVLTRMKLL-----TLPSSFCHLPNLESLCLDQCILGD--------IAIIGNLKNLEILSLCCSDIE-Q 594 (1342)
Q Consensus 529 ~~f~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~--------l~~i~~L~~L~~L~Ls~~~i~-~ 594 (1342)
.+|..+..|++|+++++.+. .++..+...++|++|+++++.+.. ...+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44667777888888888773 456667777788888888876652 134667778888888877765 3
Q ss_pred cCcccCCCCc---ccEEeccCCCCCCc-----cCccccCCC-CCCCEEEccCCcccccccccccccCCCChhhhcCCCCC
Q 000704 595 LPREIGELTQ---LKLLDLSNCSKLKV-----IPPNVISSL-SQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1342)
Q Consensus 595 LP~~i~~L~~---L~~L~L~~~~~l~~-----lp~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1342)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|++|++++|.+..... ......+..+++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~-------~~~~~~~~~~~~L 167 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASC-------EALAKALRANRDL 167 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHH-------HHHHHHHHhCCCc
Confidence 4444444444 8888888776 331 2222 4555 778888888777652110 1123455666777
Q ss_pred CEEEeeccCC
Q 000704 666 TTLEIHIRDA 675 (1342)
Q Consensus 666 ~~L~l~~~~~ 675 (1342)
++|++.++..
T Consensus 168 ~~L~l~~n~l 177 (319)
T cd00116 168 KELNLANNGI 177 (319)
T ss_pred CEEECcCCCC
Confidence 7777766543
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.66 E-value=7.7e-09 Score=119.46 Aligned_cols=157 Identities=24% Similarity=0.231 Sum_probs=79.4
Q ss_pred CCCccEEEccCCCCCC-----CCChhhhcCCCCccEEEecCCCCC-cCCccCCCCC---CCCEEEccCCCCCC-----C-
Q 000704 509 YPHLTSLCMNPKDPFL-----HIPDNFFAGMPKLRVLVLTRMKLL-TLPSSFCHLP---NLESLCLDQCILGD-----I- 573 (1342)
Q Consensus 509 ~~~Lr~L~l~~~~~~~-----~~~~~~f~~l~~Lr~L~L~~~~i~-~lp~~i~~L~---~Lr~L~L~~~~i~~-----l- 573 (1342)
.+.++.|++.++.... ......|..+++|+.|++++|.+. ..+..+..+. +|++|++++|.+.. +
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 4446666665554321 000123455666666666666654 2333333333 36666666666542 1
Q ss_pred ccccCC-CCCCEEEccCCCCc-----ccCcccCCCCcccEEeccCCCCCC-----ccCccccCCCCCCCEEEccCCcccc
Q 000704 574 AIIGNL-KNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCSKLK-----VIPPNVISSLSQLEELYLGNTSVEW 642 (1342)
Q Consensus 574 ~~i~~L-~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~L~~~~~l~-----~lp~~~l~~L~~L~~L~l~~~~~~~ 642 (1342)
..+..+ ++|+.|++++|.++ .++..+..+.+|++|++++|. +. .++.. +..+++|++|++++|.+..
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCccCh
Confidence 234555 66666666666655 334445555666666666655 33 12222 3444566666666665431
Q ss_pred cccccccccCCCChhhhcCCCCCCEEEeeccC
Q 000704 643 EFEGLNLERNNASLQELSILSHLTTLEIHIRD 674 (1342)
Q Consensus 643 ~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~ 674 (1342)
.. .......+..+++|+.|+++++.
T Consensus 208 ~~-------~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 208 EG-------ASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HH-------HHHHHHHhcccCCCCEEecCCCc
Confidence 00 01112334455666666666554
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.2e-09 Score=113.79 Aligned_cols=214 Identities=18% Similarity=0.197 Sum_probs=148.1
Q ss_pred hhcccceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcH--HHHhhcCCccEEEEEeeceeeeccchhhhhh
Q 000704 1069 KVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKH 1146 (1342)
Q Consensus 1069 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~ 1146 (1342)
..+.+|++..+.++........ --...|++++.|+++.|-+..+.+ ...+.|++|+.|.|+.|.+....... .
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----T 192 (505)
T ss_pred hhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----c
Confidence 3467888889998866654432 112358999999999998766654 56788999999999988876554422 2
Q ss_pred hccccccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCCCCcccCcccEEEEecCCCCccccchhhhh
Q 000704 1147 AGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAK 1226 (1342)
Q Consensus 1147 ~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~l~sL~~L~i~~C~~l~~l~~~~~~~ 1226 (1342)
...+++|+.|.+++|. +. |......+..+|+|++|++.....+..--..-.-+..|++|++++ +++.++.......
T Consensus 193 ~~~l~~lK~L~l~~CG-ls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCG-LS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVG 268 (505)
T ss_pred hhhhhhhheEEeccCC-CC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccc
Confidence 3368999999999995 32 333344556789999999988754433222234577899999998 5676776666777
Q ss_pred ccccccEEEEcccccchhhhcCCCcccccccccccccccccccccccceeecCcceecCCCcceEEe
Q 000704 1227 SLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFV 1293 (1342)
Q Consensus 1227 ~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i 1293 (1342)
.++.|..|.++.|. +.++-....+.......+++|++|.+.. .++..++.-+....+++|+.|.+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence 88999999999986 5555433333333456788999998876 45544444444445566666664
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.61 E-value=4.8e-07 Score=106.72 Aligned_cols=178 Identities=15% Similarity=0.157 Sum_probs=109.3
Q ss_pred cccccchHHHHHH---HHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000704 138 HEFIESRESILND---ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 138 ~~~~~gr~~~~~~---l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1342)
...++|++..+.. +..++.......+.++|++|+||||+|+.+++... ..| +.++....-.+-++++++.
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHHHHHHHH
Confidence 4457888877665 77777777777889999999999999999998764 223 3333222111111222221
Q ss_pred hCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEE--Eecchh--hhhhhcCcCc
Q 000704 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILV--TSRRRD--VLVSEMHCQN 288 (1342)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~ili--Ttr~~~--v~~~~~~~~~ 288 (1342)
.......+++.+|++|+++... +.+.+...+. .|..++| ||.+.. +.........
T Consensus 84 ----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 84 ----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred ----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 1111223688999999998763 3444433332 3555555 344332 1111233346
Q ss_pred cEEecCCCHHHHHHHHHHHhCCC-CCC-ccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000704 289 NYCVSVLNKEEAWSLFSKVVGNC-VED-PDLQTVAIQVANECGGLPIAILTVART 341 (1342)
Q Consensus 289 ~~~l~~L~~~~~~~lf~~~~~~~-~~~-~~~~~~~~~i~~~c~glPlai~~i~~~ 341 (1342)
.+.+.+++.++.+.++.+.+... ... .-..+..+.|++.++|-+..+..+...
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 89999999999999999876321 111 222566788999999999776544433
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=5.4e-07 Score=98.20 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=144.9
Q ss_pred CCcccccchHHHH---HHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC-HHHHHHHH
Q 000704 136 EGHEFIESRESIL---NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREI 211 (1342)
Q Consensus 136 ~~~~~~~gr~~~~---~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 211 (1342)
.....++|.+..+ .-|..++....+.-...||++|+||||||+.+..... ..| ..+|...+ ++++ +++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~f-----~~~sAv~~gvkdl-r~i 92 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AAF-----EALSAVTSGVKDL-REI 92 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cce-----EEeccccccHHHH-HHH
Confidence 3445566665443 2234455567888899999999999999999998665 333 44444332 3333 222
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE--Eecchhhhhh--hcC
Q 000704 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDVLVS--EMH 285 (1342)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili--Ttr~~~v~~~--~~~ 285 (1342)
++. -.+....+++.+|.+|.|..- .+-+.+ +|...+|.-|+| ||.+....-. ...
T Consensus 93 ~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 93 IEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh
Confidence 221 122222389999999999654 344433 445567888887 6666543221 344
Q ss_pred cCccEEecCCCHHHHHHHHHHHhCC-----CCCCccH-HHHHHHHHHHhCCChHHHHHHHHH----hcCCC--hhH-HHH
Q 000704 286 CQNNYCVSVLNKEEAWSLFSKVVGN-----CVEDPDL-QTVAIQVANECGGLPIAILTVART----LRNKP--LFV-WKK 352 (1342)
Q Consensus 286 ~~~~~~l~~L~~~~~~~lf~~~~~~-----~~~~~~~-~~~~~~i~~~c~glPlai~~i~~~----l~~~~--~~~-w~~ 352 (1342)
...++.+++|+.+|-.+++.+.+-+ ......+ ++...-+++.++|--.++-...-+ -+... ..+ -++
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~ 233 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEE 233 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHH
Confidence 5678999999999999999985511 1111112 446677888888866544332222 22221 112 333
Q ss_pred HHHHHhhcccCC--cchHHHHHhHHHHHhcccCcchhHHHHHhhccCCCCCCcc-H-HHHHHH-hhccccccc
Q 000704 353 ALQELRFSARNF--TGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAP-I-MDLLKY-GTGLGLFED 420 (1342)
Q Consensus 353 ~l~~l~~~~~~~--~~~~~~~~~~l~~sy~~L~~~~lk~cfl~~s~fp~~~~~~-i-~~li~~-w~~~g~~~~ 420 (1342)
++++-.. ..+. +...++. .++.-|...=.++ -....++=++-.+.|-. | ++|+++ |..-|+.++
T Consensus 234 ~l~~~~~-~~Dk~gD~hYdli-SA~hKSvRGSD~d--AALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP 302 (436)
T COG2256 234 ILQRRSA-RFDKDGDAHYDLI-SALHKSVRGSDPD--AALYYLARMIEAGEDPLYIARRLVRIASEDIGLADP 302 (436)
T ss_pred HHhhhhh-ccCCCcchHHHHH-HHHHHhhccCCcC--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCCh
Confidence 3333210 1111 2334477 8888888887765 33333444444433322 2 777775 455555543
No 45
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.56 E-value=3.4e-06 Score=101.15 Aligned_cols=204 Identities=17% Similarity=0.192 Sum_probs=123.3
Q ss_pred ccccchHHHHHHHHHHHc----C-CCeEEEEEEcCCCCcHHHHHHHHHHHHhc---CCCcc--eEEEEEecCCcCHHHHH
Q 000704 139 EFIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAKE---GRIFD--EVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 139 ~~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~~~~ 208 (1342)
..+.||++++++|...|. . ....++-|+|++|.|||+.++.|.+.... ..... .+++|....-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 456799999999988876 2 23357889999999999999999987642 12222 24667666667788899
Q ss_pred HHHHHHhCCCCCCC--ChHHHHHHHHHHHhc--CCcEEEEEcCCCCcc--cccccCCCCC-CCCCCcEEEE--Eecchhh
Q 000704 209 REIADQLGLNFCEE--SDSERIMMLCNRLKR--EKKILVILDDIWTSL--DLERTGIPFG-DVHRGCKILV--TSRRRDV 279 (1342)
Q Consensus 209 ~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~--~k~~LlvlDdv~~~~--~~~~l~~~l~-~~~~gs~ili--Ttr~~~v 279 (1342)
..|.+++....+.. .......+++..+.+ ....+||||+|.... .-+.+...+. ....+++|+| +|.....
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDL 914 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDL 914 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhc
Confidence 99998885433321 223445555555532 234589999987542 1011110010 1124556555 3332211
Q ss_pred hh----h---hcCcCccEEecCCCHHHHHHHHHHHhCC---CCCCccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000704 280 LV----S---EMHCQNNYCVSVLNKEEAWSLFSKVVGN---CVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1342)
Q Consensus 280 ~~----~---~~~~~~~~~l~~L~~~~~~~lf~~~~~~---~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~ 343 (1342)
.. . .++ ...+...|++.++-.+++..++.. ..++..++-+|+.++..-|-.=.||.++-.+..
T Consensus 915 perLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 915 PERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 11 1 122 234677999999999999999842 223344455555555555556667666655554
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=7.6e-09 Score=106.27 Aligned_cols=104 Identities=32% Similarity=0.436 Sum_probs=47.3
Q ss_pred CCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccC
Q 000704 534 MPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSN 612 (1342)
Q Consensus 534 l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~ 612 (1342)
.+.+|+|++++|.|..+-. +..|++|..|||++|.++.+ ..-.+|-|.++|+|++|.|..+ .++++|++|..||+++
T Consensus 306 ~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSS 383 (490)
T ss_pred ccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccc
Confidence 4444555555554443322 44444555555555544443 1223444445555555544444 2445555555555555
Q ss_pred CCCCCccCc-cccCCCCCCCEEEccCCcc
Q 000704 613 CSKLKVIPP-NVISSLSQLEELYLGNTSV 640 (1342)
Q Consensus 613 ~~~l~~lp~-~~l~~L~~L~~L~l~~~~~ 640 (1342)
|+ +..+.. ..||+|+.|+++.+.+|.+
T Consensus 384 N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 384 NQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 43 332211 1145555555555555443
No 47
>PRK06893 DNA replication initiation factor; Validated
Probab=98.55 E-value=6.8e-07 Score=96.12 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=94.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..+.+.++|+.|+|||+||+.+++....+ ...+.|+++.... .. ...+.+.+ .
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~--------------------~~~~~~~~--~ 90 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF--------------------SPAVLENL--E 90 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh--------------------hHHHHhhc--c
Confidence 34678999999999999999999987532 3455677653210 00 01122223 2
Q ss_pred CcEEEEEcCCCCc---ccccc-cCCCCCC-CCCCcEEEEEecch----------hhhhhhcCcCccEEecCCCHHHHHHH
Q 000704 239 KKILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRR----------DVLVSEMHCQNNYCVSVLNKEEAWSL 303 (1342)
Q Consensus 239 k~~LlvlDdv~~~---~~~~~-l~~~l~~-~~~gs~iliTtr~~----------~v~~~~~~~~~~~~l~~L~~~~~~~l 303 (1342)
+.-+||+||+|.. ..|+. +...+.. ...|..|||+|.+. .+.. .+.....++++++++++.+++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCCHHHHHHH
Confidence 3458999999874 34542 2222221 12355665554443 4444 355567899999999999999
Q ss_pred HHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 304 FSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 304 f~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
+++.+.... -.--+++.+-|++++.|-.-++..+
T Consensus 170 L~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 170 LQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 999884221 1112567788999998876655443
No 48
>PF13173 AAA_14: AAA domain
Probab=98.45 E-value=3e-07 Score=89.04 Aligned_cols=121 Identities=19% Similarity=0.174 Sum_probs=82.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1342)
.+++.|.|+.|+||||++++++++.. ....+++++..+......... +..+.+.+.. ..+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLELI-KPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHhh-ccC
Confidence 36899999999999999999998765 335567776554322111000 0112222222 247
Q ss_pred cEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhh-----hcCcCccEEecCCCHHHH
Q 000704 240 KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNKEEA 300 (1342)
Q Consensus 240 ~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~-----~~~~~~~~~l~~L~~~~~ 300 (1342)
+.+|++|+|....+|......+.+..+..+|++|+........ ..|....++|.||+..|.
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999988888776666665567899999998776632 233455789999987763
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=1.9e-07 Score=110.94 Aligned_cols=173 Identities=28% Similarity=0.379 Sum_probs=113.8
Q ss_pred CceEEEecccCCCCCCCcCCCC--CccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEcc
Q 000704 489 NCIAIFLHDINTGELPEGLEYP--HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLD 566 (1342)
Q Consensus 489 ~~r~lsl~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~ 566 (1342)
.+..+.+..+.+.+++...... +|+.|++.+|.. ..+|.. ...++.|+.|++++|.+..+|...+.+..|+.|+++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccch-hhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheecc
Confidence 4666777777777777666443 677777777655 334322 366777777777777777777766677777777777
Q ss_pred CCCCCCCcc-ccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCccccccc
Q 000704 567 QCILGDIAI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1342)
Q Consensus 567 ~~~i~~l~~-i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 645 (1342)
+|.+..++. ++.+.+|++|.+++|.+...|..+.++.++..|.+.++. +..++.. ++.+.+|+.|++++|.+.
T Consensus 195 ~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~---- 268 (394)
T COG4886 195 GNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS---- 268 (394)
T ss_pred CCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc----
Confidence 777777643 356666777777777666666677777777777766654 4444444 677777777777776654
Q ss_pred ccccccCCCChhhhcCCCCCCEEEeeccCCCCC
Q 000704 646 GLNLERNNASLQELSILSHLTTLEIHIRDAVIL 678 (1342)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~ 678 (1342)
.+..++.+.+|+.|+++++.....
T Consensus 269 ---------~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 ---------SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---------ccccccccCccCEEeccCcccccc
Confidence 223366777777777776655443
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=7.7e-06 Score=92.98 Aligned_cols=177 Identities=18% Similarity=0.180 Sum_probs=117.1
Q ss_pred ccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHh----cCCCcceEEEEEe-cCCcCHHHHHHHHH
Q 000704 139 EFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAK----EGRIFDEVVFAEV-SQTPDLKRIRREIA 212 (1342)
Q Consensus 139 ~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~~~~~i~ 212 (1342)
..++|.+..++.+.+++..+.. ....++|+.|+||||+|+.+++..- ...|+|...|... +....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 3577888889999999876554 4678999999999999999998652 2356676666552 333444442 3333
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCC--CcccccccCCCCCCCCCCcEEEEEecchhhh-hhhcCcCcc
Q 000704 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIW--TSLDLERTGIPFGDVHRGCKILVTSRRRDVL-VSEMHCQNN 289 (1342)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~--~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~-~~~~~~~~~ 289 (1342)
+.+.... . .+++-++|+|+++ +...++.+...+.....++.+|++|.+.+.. .........
T Consensus 83 ~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~ 146 (313)
T PRK05564 83 EEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQI 146 (313)
T ss_pred HHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhcee
Confidence 3332211 0 1455566666654 4456777777777667789998888765432 212233568
Q ss_pred EEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 290 YCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 290 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
+.+.++++++....+.+.... . -.+.++.++..++|.|..+..
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~~-~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 147 YKLNRLSKEEIEKFISYKYND-I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeCCCcCHHHHHHHHHHHhcC-C----CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999998888765431 1 133467889999999875543
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1e-05 Score=93.67 Aligned_cols=177 Identities=10% Similarity=0.122 Sum_probs=109.9
Q ss_pred cccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCC-------------------cceEEEEE
Q 000704 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFAE 197 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 197 (1342)
..+++|.+..++.+.+.+...++ ..+.++|+.|+||||+|+.+++....... +....++.
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 45688999999999888876554 46789999999999999999987642111 11112221
Q ss_pred ecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEE
Q 000704 198 VSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKIL 271 (1342)
Q Consensus 198 vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~il 271 (1342)
.+....+ +.+.++.+.+. .+++-++|+|++.... .++.+...+.......++|
T Consensus 95 ~~~~~~v---------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 95 AASRTKV---------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred ccccCCH---------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1111111 22223333221 1456699999997764 4555555554444566777
Q ss_pred EEecch-hhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 272 VTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 272 iTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
++|.+. .+.....+....+++.+++.++..+.+.+.+..... .--++.++.|++.++|.|..+.
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 766543 333222333568999999999999888876632111 1113557789999999886443
No 52
>PTZ00202 tuzin; Provisional
Probab=98.34 E-value=1.6e-05 Score=88.53 Aligned_cols=164 Identities=14% Similarity=0.173 Sum_probs=101.7
Q ss_pred CCCcccccchHHHHHHHHHHHcC---CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 135 NEGHEFIESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
+.+..+|+||++++..+...|.+ ...+++.|+|++|+|||||++.+..... + .+++.-.. +..++++.|
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC--CHHHHHHHH
Confidence 44566899999999999998863 2346999999999999999999996543 1 13322222 779999999
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHh----c-CCcEEEEEcCCCCc--c-cccccCCCCCCCCCCcEEEEEecchhhhhh-
Q 000704 212 ADQLGLNFCEESDSERIMMLCNRLK----R-EKKILVILDDIWTS--L-DLERTGIPFGDVHRGCKILVTSRRRDVLVS- 282 (1342)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~----~-~k~~LlvlDdv~~~--~-~~~~l~~~l~~~~~gs~iliTtr~~~v~~~- 282 (1342)
+.+|+.... ....+....+.+.+. . +++.+||+-==+-. . .+.+. ..+.....-|-|++---.+.+...
T Consensus 330 L~ALGV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 330 VKALGVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHcCCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhc
Confidence 999997422 222333444444332 2 67777777422111 0 11110 012222344667765555544332
Q ss_pred -hcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 283 -EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 283 -~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
....-.-|.+.+++.++|.+.-.+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 23334568889999999988876654
No 53
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=5.3e-06 Score=101.54 Aligned_cols=185 Identities=15% Similarity=0.191 Sum_probs=114.7
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEE-EEEEcCCCCcHHHHHHHHHHHHhcCCC-------------------cceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVYM-IGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv 196 (1342)
.+..++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++...-... |..++++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 35568899999999999888766654 589999999999999999987642211 1112223
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEe
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt 274 (1342)
..+....+.++ ++|.+.+. ..-..+++-++|+|++... ..++.+...+-......++|++|
T Consensus 94 dAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT 156 (944)
T PRK14949 94 DAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT 156 (944)
T ss_pred ccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC
Confidence 22111122221 23322221 1111367889999999766 34555544443333456655544
Q ss_pred -cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 275 -RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 275 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
....+..........|++++++.++....+.+.+.... ..--.+..+.|++.++|.|.-+..+.
T Consensus 157 Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 157 TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44444432233457899999999999999988774221 11124567889999999886555443
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.33 E-value=4.4e-06 Score=90.66 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=101.6
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000704 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1342)
Q Consensus 143 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1342)
+.+..++.+.+++.....+.+.|+|+.|+|||++|+.+++.... .....++++++.-.. ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHH------hH-----------
Confidence 34556777777765555678999999999999999999987652 233456665443211 00
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCCCCcc---ccc-ccCCCCCC-CCCCcEEEEEecchhh---------hhhhcCcCc
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDIWTSL---DLE-RTGIPFGD-VHRGCKILVTSRRRDV---------LVSEMHCQN 288 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~~-~l~~~l~~-~~~gs~iliTtr~~~v---------~~~~~~~~~ 288 (1342)
..+...+. +.-+||+||++... .|. .+...+.. ...+.+||+||+.... .. .+....
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~-r~~~~~ 152 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT-RLAWGL 152 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH-HHhcCe
Confidence 11112222 33489999997653 232 23222221 1234578998885331 11 122245
Q ss_pred cEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 289 NYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 289 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
.+++.+++.++...++...+.... ..--.+..+.+++.+.|.|..+.-+.
T Consensus 153 ~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 153 VFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 789999999999999887652111 11124556777788888887665543
No 55
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.33 E-value=7.1e-06 Score=87.34 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=108.8
Q ss_pred cccccchHHHHH---HHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000704 138 HEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 138 ~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1342)
..+++|.+..+. -|.+++..+.++-+.+||++|+||||||+.+....+... ..||..|....-..=.++|.++
T Consensus 137 L~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 137 LDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 344555544332 234455567889999999999999999999998776332 5678777654333333444433
Q ss_pred hCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE--Eecchhhhhh--hcCcCc
Q 000704 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV--TSRRRDVLVS--EMHCQN 288 (1342)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili--Ttr~~~v~~~--~~~~~~ 288 (1342)
.. . ...+ .++|..|.+|.|..- .+-+. .+|...+|.-++| ||.+...--. ......
T Consensus 213 aq-------------~-~~~l-~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~ 274 (554)
T KOG2028|consen 213 AQ-------------N-EKSL-TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCR 274 (554)
T ss_pred HH-------------H-HHhh-hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccc
Confidence 21 1 1112 268899999999543 33333 3566678887777 6766543211 345567
Q ss_pred cEEecCCCHHHHHHHHHHHh---CC------CCCCcc--H-HHHHHHHHHHhCCChH
Q 000704 289 NYCVSVLNKEEAWSLFSKVV---GN------CVEDPD--L-QTVAIQVANECGGLPI 333 (1342)
Q Consensus 289 ~~~l~~L~~~~~~~lf~~~~---~~------~~~~~~--~-~~~~~~i~~~c~glPl 333 (1342)
++.|++|+.++...++.+.. ++ ..+.+. + ..+.+-++..|.|-..
T Consensus 275 VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 275 VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 89999999999999988744 22 111111 2 3456667777877654
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.8e-06 Score=97.24 Aligned_cols=180 Identities=13% Similarity=0.148 Sum_probs=114.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCC------------------------Ccc
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR------------------------IFD 191 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~------------------------~F~ 191 (1342)
.+..++|.+..++.|.+++..+++. .+-++|..|+||||+|+.+.+...-.. .|.
T Consensus 14 tFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 3556889999999999999866654 568999999999999999998764210 111
Q ss_pred eEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCC
Q 000704 192 EVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVH 265 (1342)
Q Consensus 192 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~ 265 (1342)
.++++..+....+ +.+.++.+.+. .++.-++|+|++... ..++.+...+-.-.
T Consensus 94 DviEIdAas~~gV---------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 94 DYIEMDAASNRGV---------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred cceEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 1222222211122 22223333221 357779999999776 34555555454333
Q ss_pred CCcE-EEEEecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 266 RGCK-ILVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 266 ~gs~-iliTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
.+.+ |++||....+..........+.++.++.++..+.+.+.++...... -.+..+.|++.++|.|..+..+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 4555 5555555655543344457899999999999999988774322111 1345678999999999755443
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.32 E-value=8.5e-06 Score=94.64 Aligned_cols=198 Identities=15% Similarity=0.128 Sum_probs=110.7
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc-eEEEEEecCCcCH-HHHHH---HHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDL-KRIRR---EIA 212 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~---~i~ 212 (1342)
...++|++..++.+..++..+..+.+.++|+.|+||||+|+.+.+.... ..++ ..+.+++++.... ...+. ...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 92 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADFFDQGKKYLVEDPRFA 92 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC-cccccceEEechhhhhhcchhhhhcCcchh
Confidence 4567899999999999888766667889999999999999999987642 2222 2344444321100 00000 000
Q ss_pred HHhCCC-CCCCChHHHHHHHHHHHhc-----CCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecchh-hhhhh
Q 000704 213 DQLGLN-FCEESDSERIMMLCNRLKR-----EKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSE 283 (1342)
Q Consensus 213 ~~l~~~-~~~~~~~~~~~~l~~~l~~-----~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~~ 283 (1342)
..++.. .......+....+.+.... +.+-+||+||+.... ....+...+......+++|+||.... +....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L 172 (337)
T PRK12402 93 HFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPI 172 (337)
T ss_pred hhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhh
Confidence 000000 0000111222222222211 345589999996552 23333333323334567888775432 22211
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
......+.+.+++.++...++.+.+...... --.+..+.+++.++|.+-.+..
T Consensus 173 ~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 173 RSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred cCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 2234578899999999999998876321111 1245678888999887765543
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.1e-05 Score=96.92 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=113.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCC-------------------CcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv 196 (1342)
.+..++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...-.. .|..++++
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 455688999999999999886554 4567999999999999999888664211 12223333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEE
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKI 270 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~i 270 (1342)
.-+....+.+ +.++.+... .++.-++|||++.... .|+.+...+-......++
T Consensus 94 DAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 94 DAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred cccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 3222222222 222222211 2456689999998764 466665555444456777
Q ss_pred EEEecchh-hhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHH
Q 000704 271 LVTSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILT 337 (1342)
Q Consensus 271 liTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~ 337 (1342)
|+||.+.. +..........++++.++.++..+.+.+.++.+... --.+..+.|++.++|... |+..
T Consensus 153 ILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 153 ILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 77776544 332223345689999999999999999887532211 124567789999988664 4444
No 59
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.29 E-value=1.3e-06 Score=93.87 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=63.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC--cCHHHHHHHH-----HHHhCCCCCCC-ChHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREI-----ADQLGLNFCEE-SDSERIMM 230 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 230 (1342)
.-..++|+|++|+|||||++.+|++.... +|+.++|+++.+. .++.++++.+ +..++...... .....+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34579999999999999999999988754 8999999998877 7999999999 33333210000 00001111
Q ss_pred HHH-HHhcCCcEEEEEcCCCCc
Q 000704 231 LCN-RLKREKKILVILDDIWTS 251 (1342)
Q Consensus 231 l~~-~l~~~k~~LlvlDdv~~~ 251 (1342)
..+ ...++++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 222 223489999999998654
No 60
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=6.1e-05 Score=85.94 Aligned_cols=200 Identities=25% Similarity=0.278 Sum_probs=128.5
Q ss_pred ccchHHHHHHHHHHHc----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 141 IESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
+.+|+++++++...|. .....-+.|+|..|.|||+.++.|.+..+....=..+++|++-...+...++.+|+.+++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999998876 233334999999999999999999998874322222789999999999999999999996
Q ss_pred C-CCCCCChHHHHHHHHHHHhc-CCcEEEEEcCCCCccccc--ccCCCCCC-CCCCcEEEEE--ecchhhhhh-------
Q 000704 217 L-NFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLE--RTGIPFGD-VHRGCKILVT--SRRRDVLVS------- 282 (1342)
Q Consensus 217 ~-~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~~~~--~l~~~l~~-~~~gs~iliT--tr~~~v~~~------- 282 (1342)
. ...+.+..+....+.+.+.+ ++.++||||++.....-. .+..-+.. ....++|++. +-+......
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 3 23334455566666666654 688999999997663221 11111111 1124554443 333322221
Q ss_pred hcCcCccEEecCCCHHHHHHHHHHHhC----CCC-CCccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000704 283 EMHCQNNYCVSVLNKEEAWSLFSKVVG----NCV-EDPDLQTVAIQVANECGGLPIAILTVART 341 (1342)
Q Consensus 283 ~~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~-~~~~~~~~~~~i~~~c~glPlai~~i~~~ 341 (1342)
.++. ..+...|-+.+|-..++..++. ... .+..++-+|...++..|-.=.||.++-.+
T Consensus 179 ~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 179 SLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred ccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 1222 3488999999999999999882 222 23334444444444444455565554443
No 61
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=1.2e-05 Score=98.93 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=105.2
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc---eEEEEEecCC---cCHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD---EVVFAEVSQT---PDLKRIRREI 211 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~~~~~i 211 (1342)
...++|++..+..+.+.+.......+.|+|++|+||||+|+.+++..+....+. ..-|+.+... .+...+...+
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 445789988888888877656667899999999999999999998775444332 2345555421 1222221111
Q ss_pred ---------------HHHhCCC------------------CCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccc
Q 000704 212 ---------------ADQLGLN------------------FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER 256 (1342)
Q Consensus 212 ---------------~~~l~~~------------------~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~ 256 (1342)
+...+.. ....-+......+.+.+. ++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccchh
Confidence 1111110 001112233445566664 68888887777655 35777
Q ss_pred cCCCCCCCCCCcEEEE--Eecchhhhhh-hcCcCccEEecCCCHHHHHHHHHHHhC
Q 000704 257 TGIPFGDVHRGCKILV--TSRRRDVLVS-EMHCQNNYCVSVLNKEEAWSLFSKVVG 309 (1342)
Q Consensus 257 l~~~l~~~~~gs~ili--Ttr~~~v~~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~ 309 (1342)
+...+....+...|+| ||++...... .......+.+.+++.+|.+.++.+.+.
T Consensus 312 ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 312 IKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred hhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 7766666555555665 5664432111 112334678999999999999998774
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.8e-05 Score=93.76 Aligned_cols=177 Identities=11% Similarity=0.134 Sum_probs=111.1
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCc-----------------------ce
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIF-----------------------DE 192 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-----------------------~~ 192 (1342)
....++|.+..+..+...+..+++ ..+-++|+.|+||||+|+.+++..--.... ..
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 355678998888888887765554 578899999999999999999876422111 01
Q ss_pred EEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCC
Q 000704 193 VVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHR 266 (1342)
Q Consensus 193 ~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~ 266 (1342)
++.+.......+ +.+..+.+... .+++-++|+|+++.. ..|+.+...+.....
T Consensus 99 v~eidaas~~~v---------------------d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~ 157 (507)
T PRK06645 99 IIEIDAASKTSV---------------------DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPP 157 (507)
T ss_pred EEEeeccCCCCH---------------------HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCC
Confidence 111111111112 22222222221 257788999999875 456666655554445
Q ss_pred CcEEEE-EecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 267 GCKILV-TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 267 gs~ili-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
.+++|+ ||+...+..........+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+
T Consensus 158 ~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 158 HIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 666554 5555555443223446799999999999999998884221111 1345677999999977544
No 63
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.26 E-value=2.3e-06 Score=95.04 Aligned_cols=90 Identities=16% Similarity=0.231 Sum_probs=63.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc--CHHHHHHHHHHHhCC-CCCCCChHH-----HHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGL-NFCEESDSE-----RIMMLC 232 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~-~~~~~~~~~-----~~~~l~ 232 (1342)
....|+|++|+||||||++||+..... +|+.++||.+++.. ++.++++.|...+-. ..++..... .+-...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999998855 89999999999888 788888888632211 112211110 111222
Q ss_pred HHH-hcCCcEEEEEcCCCCc
Q 000704 233 NRL-KREKKILVILDDIWTS 251 (1342)
Q Consensus 233 ~~l-~~~k~~LlvlDdv~~~ 251 (1342)
+++ ..+++++|++|++...
T Consensus 249 e~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHcCCCEEEEEEChHHH
Confidence 222 2479999999998543
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.5e-05 Score=94.58 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=112.4
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCC-------------------CcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv 196 (1342)
....++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++...-.. .|..++.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 455788999999999999886654 5779999999999999999988753211 11122222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----hcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEE
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~i 270 (1342)
..+....+. .+.++.... ..+++-++|+|+|... ..++.+...+-....+.++
T Consensus 93 DAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 93 DAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred cccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 222211222 222222221 1257779999999765 3445554444443456677
Q ss_pred EEEecch-hhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 271 LVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 271 liTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
|++|.+. .+..........+++++++.++....+.+.+...... --.+....|++.++|-+..+..
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~-id~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA-ADQDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 7766543 3332223455789999999999999988877322111 1145577899999998755543
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=8.5e-07 Score=105.43 Aligned_cols=157 Identities=34% Similarity=0.434 Sum_probs=110.3
Q ss_pred CCCCccEEEccCCCCCCCCChhhhcCCC-CccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCcc-ccCCCCCCEE
Q 000704 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMP-KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEIL 585 (1342)
Q Consensus 508 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~-i~~L~~L~~L 585 (1342)
..+.+..|.+.++.. ..++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..++. .+.+.+|+.|
T Consensus 114 ~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhe
Confidence 456677777777665 4444432 3343 7888888888888777777888888888888888777744 3377888888
Q ss_pred EccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCC
Q 000704 586 SLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHL 665 (1342)
Q Consensus 586 ~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L 665 (1342)
++++|.+..+|..+..+..|++|.+++|. ....+.. +.++.++..|.+.++.+. ..+..++.++++
T Consensus 192 ~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------------~~~~~~~~l~~l 257 (394)
T COG4886 192 DLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------------DLPESIGNLSNL 257 (394)
T ss_pred eccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee------------eccchhcccccc
Confidence 88888888888777777778888887775 3334433 677777777776665543 124677788889
Q ss_pred CEEEeeccCCCCCCc
Q 000704 666 TTLEIHIRDAVILPK 680 (1342)
Q Consensus 666 ~~L~l~~~~~~~~~~ 680 (1342)
+.|+++.+.+..++.
T Consensus 258 ~~L~~s~n~i~~i~~ 272 (394)
T COG4886 258 ETLDLSNNQISSISS 272 (394)
T ss_pred ceecccccccccccc
Confidence 999999888877665
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.6e-05 Score=94.85 Aligned_cols=185 Identities=13% Similarity=0.136 Sum_probs=111.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC-------------------CCcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv 196 (1342)
....++|.+..++.+...+...++ ..+-++|+.|+||||+|+.+++...-. ..|...+++
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 355688999999999988876554 457899999999999999999865311 112233333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEE-EE
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-VT 273 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~il-iT 273 (1342)
.......++++ ++|++.+ ...-..+++-++|+|++... ..++.+...+-.....+++| +|
T Consensus 94 daas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 94 DAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred ecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 32222222221 2222211 11111257779999999765 34555555554444556555 45
Q ss_pred ecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHHH
Q 000704 274 SRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVA 339 (1342)
Q Consensus 274 tr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~i~ 339 (1342)
|....+..........+++++++.++....+.+.+..... .--++....|++.++|-+. |+..+-
T Consensus 157 td~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 157 TDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 5544444322334578999999999988888776632111 1124456788999999664 444443
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=2.5e-05 Score=93.17 Aligned_cols=190 Identities=13% Similarity=0.067 Sum_probs=112.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..++.|..++...... .+.++|+.|+||||+|+.+++.......+...+|.|.+.. .+....
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~--------~i~~~~ 83 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL--------AVRRGA 83 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH--------HHhcCC
Confidence 3456889998888898888766554 5699999999999999999988753222322333322110 000000
Q ss_pred CCC-----CCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEec-chhhhhhh
Q 000704 216 GLN-----FCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLVSE 283 (1342)
Q Consensus 216 ~~~-----~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr-~~~v~~~~ 283 (1342)
..+ .......+.+..+.+.+. .+++-++|+|+++.. ..++.+...+........+|++|. ...+....
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000 000011122223322221 256779999999765 346666555544444555555554 44443322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
......+++.+++.++....+.+.+...... --.+....|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi~-i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE-AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 2335689999999999999999887321111 12456788999999988644
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.23 E-value=4.1e-06 Score=82.00 Aligned_cols=116 Identities=22% Similarity=0.330 Sum_probs=79.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcC---CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-CChHHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG---RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE-ESDSERIMMLCNR 234 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~ 234 (1342)
+.+++.|+|.+|+|||++++.+.++.... ..-..++|+.++...+...+.+.|+.+++..... .+.......+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999999876421 1134567999988889999999999999987665 4455556677777
Q ss_pred HhcCCcEEEEEcCCCCc-c--cccccCCCCCCCCCCcEEEEEecc
Q 000704 235 LKREKKILVILDDIWTS-L--DLERTGIPFGDVHRGCKILVTSRR 276 (1342)
Q Consensus 235 l~~~k~~LlvlDdv~~~-~--~~~~l~~~l~~~~~gs~iliTtr~ 276 (1342)
+.+.+..+||+||+... . .++.+..... ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77666679999998664 2 2333322222 566777777664
No 69
>PLN03025 replication factor C subunit; Provisional
Probab=98.23 E-value=1.6e-05 Score=90.52 Aligned_cols=183 Identities=14% Similarity=0.052 Sum_probs=107.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc-eEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.++.++.|.+++.....+.+-++|++|+||||+|+.+++...- ..|. .++-+..++..... ..+++++.+
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i~~~ 88 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKIKMF 88 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHHHHH
Confidence 34567788888888888877666677889999999999999999987641 2232 12222223322222 223322222
Q ss_pred CCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecch-hhhhhhcCcCccEEe
Q 000704 216 GLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYCV 292 (1342)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~~~~~~~~l 292 (1342)
..... ....++.-++|+|++.... ..+.+...+......+++|+++... .+..........+++
T Consensus 89 ~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f 155 (319)
T PLN03025 89 AQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRF 155 (319)
T ss_pred Hhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccC
Confidence 11000 0011456799999997763 2233332232223456777766443 222211223457899
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 293 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
++++.++....+...+......- -.+..+.|++.++|-.-.+
T Consensus 156 ~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 156 SRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 99999999999988873211111 1445778889998866443
No 70
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.23 E-value=1.2e-05 Score=82.36 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=92.1
Q ss_pred CCCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHH
Q 000704 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1342)
+....+|+|.+..++.+--++. .....-+-.||++|+||||||+-+++.... .|. +++.+.-....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~--~~~---~~sg~~i~k~~dl-- 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV--NFK---ITSGPAIEKAGDL-- 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH--
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--CeE---eccchhhhhHHHH--
Confidence 3456679999888877644433 345778999999999999999999998763 342 2222111111121
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--c-------ccccCCCC-CCCC-----------CCc
Q 000704 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--D-------LERTGIPF-GDVH-----------RGC 268 (1342)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~-------~~~l~~~l-~~~~-----------~gs 268 (1342)
..+...+ +++-+|.+|++.... + .++....+ ...+ +=+
T Consensus 93 -------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1122222 244566667775441 1 11111100 0011 123
Q ss_pred EEEEEecchhhhhhhcCcC--ccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 269 KILVTSRRRDVLVSEMHCQ--NNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 269 ~iliTtr~~~v~~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
-|=.|||...+.. ..... ...+++..+.+|-.++..+.+.-.. -+--++.+.+|++++.|-|--+.-+-
T Consensus 152 ligATTr~g~ls~-pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~-i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 152 LIGATTRAGLLSS-PLRDRFGIVLRLEFYSEEELAKIVKRSARILN-IEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEEEESSGCCTSH-CCCTTSSEEEE----THHHHHHHHHHCCHCTT--EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred Eeeeeccccccch-hHHhhcceecchhcCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 3556898876655 23332 3458999999999999988774211 12235779999999999997544433
No 71
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=1.5e-05 Score=92.18 Aligned_cols=195 Identities=12% Similarity=0.087 Sum_probs=112.4
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..+..|..++...++. .+.++|+.|+||||+|+.+++...-...... ..+....+-.++...+...+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~dv 92 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISSDV 92 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCccc
Confidence 4556889999999999988876654 5899999999999999999987542111000 00011111111111110000
Q ss_pred C-CCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEE-EEecchhhhhhhcCcC
Q 000704 216 G-LNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-VTSRRRDVLVSEMHCQ 287 (1342)
Q Consensus 216 ~-~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~il-iTtr~~~v~~~~~~~~ 287 (1342)
. .+.......+.+.++.+.+. .++.-++|+|++... ..++.+...+-........| .||....+........
T Consensus 93 iEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRC 172 (484)
T PRK14956 93 LEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRC 172 (484)
T ss_pred eeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhh
Confidence 0 00000011222333333322 356779999999766 45666655554333344444 4555555544333345
Q ss_pred ccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 288 NNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 288 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
..|.+.+++.++..+.+.+.+..... .--.+....|++.++|.+.-+
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi-~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENV-QYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCChHHHH
Confidence 67999999999999888887632211 112456788999999988543
No 72
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.19 E-value=6.8e-05 Score=95.56 Aligned_cols=260 Identities=17% Similarity=0.216 Sum_probs=150.7
Q ss_pred ccchHHHHHHHHHHHc---CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec---CCc---CHHHHHHHH
Q 000704 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS---QTP---DLKRIRREI 211 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs---~~~---~~~~~~~~i 211 (1342)
++||+.+++.|...+. ...-.++.|.|..|||||+++++|.+....+ +...+--..+ .+. .....++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 6799999999998876 3556799999999999999999999887633 2111111111 111 122233333
Q ss_pred HHHh-------------------CCCCCC-----------------------CChHHHHH-----HHHHHHhcCCcEEEE
Q 000704 212 ADQL-------------------GLNFCE-----------------------ESDSERIM-----MLCNRLKREKKILVI 244 (1342)
Q Consensus 212 ~~~l-------------------~~~~~~-----------------------~~~~~~~~-----~l~~~l~~~k~~Llv 244 (1342)
+.++ +..... .....+.. .+.....+.|+.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3222 111000 00011111 122223346899999
Q ss_pred EcCC-CCccc-ccccCCCCCCCC----CCcEEEEEecchhh---hhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCc
Q 000704 245 LDDI-WTSLD-LERTGIPFGDVH----RGCKILVTSRRRDV---LVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDP 315 (1342)
Q Consensus 245 lDdv-~~~~~-~~~l~~~l~~~~----~gs~iliTtr~~~v---~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 315 (1342)
+||+ |-+.. .+-+........ .-..|..+...... ..........+.|.||+..+...+.....+....
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~-- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL-- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--
Confidence 9998 44421 111111100000 01123333332222 1112344578999999999999999998875322
Q ss_pred cHHHHHHHHHHHhCCChHHHHHHHHHhcCC------ChhH-HHHHHHHHhhcccCCcchHHHHHhHHHHHhcccCcchhH
Q 000704 316 DLQTVAIQVANECGGLPIAILTVARTLRNK------PLFV-WKKALQELRFSARNFTGLEALLGSTIELIYNYLEGEELK 388 (1342)
Q Consensus 316 ~~~~~~~~i~~~c~glPlai~~i~~~l~~~------~~~~-w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~lk 388 (1342)
...+..+.|++|..|.|+=+.-+-..+... .+.. |..-..++. .....+.+. ..+..-.+.||.. .|
T Consensus 238 ~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~----~~~~~~~vv-~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 238 LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG----ILATTDAVV-EFLAARLQKLPGT-TR 311 (849)
T ss_pred ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC----CchhhHHHH-HHHHHHHhcCCHH-HH
Confidence 235678899999999999888777766543 2222 543333322 223344455 6788999999997 69
Q ss_pred HHHHhhccCCCCCCccHHHHHHHh
Q 000704 389 LTFLLCSLMKHPCDAPIMDLLKYG 412 (1342)
Q Consensus 389 ~cfl~~s~fp~~~~~~i~~li~~w 412 (1342)
+..-..|++=. .|+.+.|-..|
T Consensus 312 ~Vl~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 312 EVLKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHHHhCc--cCCHHHHHHHH
Confidence 99999999977 45555444433
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=98.19 E-value=6.1e-05 Score=90.94 Aligned_cols=184 Identities=11% Similarity=0.091 Sum_probs=110.1
Q ss_pred CcccccchHHHHHHHHHHHcC----CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1342)
....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+. +-++.+...+.. ..+.++
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTAD-VIERVA 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccHH-HHHHHH
Confidence 355688999999999998862 2267899999999999999999998763 332 233444333222 223332
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc------ccccCCCCCCCCCCcEEEEEecchh-hhh-hhc
Q 000704 213 DQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGDVHRGCKILVTSRRRD-VLV-SEM 284 (1342)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------~~~l~~~l~~~~~gs~iliTtr~~~-v~~-~~~ 284 (1342)
...... ..+...++.+||+|+++.... +..+...+. ..+..||+|+.+.. ... ...
T Consensus 86 ~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 86 GEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh
Confidence 221110 011112678999999976522 333333222 12344666664322 111 112
Q ss_pred CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhc
Q 000704 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLR 343 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~ 343 (1342)
.....+.+.+++.++....+.+.+......- -.++...|++.++|-..++......+.
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i-~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIEC-DDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 2346789999999999998888773211111 145678899999997776654444443
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.2e-05 Score=91.48 Aligned_cols=188 Identities=14% Similarity=0.135 Sum_probs=109.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCC-------------------cceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv 196 (1342)
....++|.+.....|...+..+.+ ..+-++|++|+||||+|+.+++....... +..++.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 355688998888888888776665 46899999999999999999887542110 1112222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEE-
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT- 273 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliT- 273 (1342)
..+....+.++ ++|.+.... ... .+++-++|+|++... ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~i-R~i~~~~~~---------------~p~-~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilat 154 (472)
T PRK14962 92 DAASNRGIDEI-RKIRDAVGY---------------RPM-EGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLAT 154 (472)
T ss_pred eCcccCCHHHH-HHHHHHHhh---------------Chh-cCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 22222222222 122221110 001 256779999998654 3344444444333334444444
Q ss_pred ecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCC-ChHHHHHHHHHh
Q 000704 274 SRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG-LPIAILTVARTL 342 (1342)
Q Consensus 274 tr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlai~~i~~~l 342 (1342)
|....+..........+.+.+++.++....+.+.+..... .--.+....|++.++| ++.|+..+..+.
T Consensus 155 tn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 155 TNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred CChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4334443322334568899999999999988887732111 1114556788887765 466666665543
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=9.3e-06 Score=81.56 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=72.8
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000704 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1342)
Q Consensus 143 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1342)
|++..+..+...+.....+.+.|+|.+|+||||+|+.+++.... .-..++++..++..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR--PGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc--CCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 67788888888887666678999999999999999999998752 12345666655443322221111100
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCCCCc-----ccccccCCCCCC---CCCCcEEEEEecchh
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGD---VHRGCKILVTSRRRD 278 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~-----~~~~~l~~~l~~---~~~gs~iliTtr~~~ 278 (1342)
............++.++|+||++.. ..+..+...+.. ...+.+||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000011111257889999999854 122222122211 136788888888654
No 76
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=3e-06 Score=95.37 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred CccEEEEE-eeceeeeccchhhhhhhccccccceeeeCCCCCcchhhccCCccchhhcccceeeeec--ccCccccCCCC
Q 000704 1123 NLEKLELR-WSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWW--CDNLVNLVPSS 1199 (1342)
Q Consensus 1123 ~L~~L~l~-c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~--C~~l~~l~~~~ 1199 (1342)
+|++|.++ |+.++.++.. .+++|+.|.+++|.++..++ ++|+.|++.+ |..+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~sLP----------~sLe~L~L~~n~~~~L~~LP--- 131 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEISGLP----------ESVRSLEIKGSATDSIKNVP--- 131 (426)
T ss_pred CCcEEEccCCCCcccCCch--------hhhhhhheEccCcccccccc----------cccceEEeCCCCCcccccCc---
Confidence 45555555 5555444320 23456666666666555542 2345555432 22333333
Q ss_pred cccCcccEEEEecCCCCccccchhhhhccccccEEEEcccccchhhhcCCCccccccccccccccccccccccc-ceeec
Q 000704 1200 PSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESL-TSFYS 1278 (1342)
Q Consensus 1200 ~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L-~~l~~ 1278 (1342)
++|++|.+.++.......... ...++|++|.|++|..+. +|. ..+.+|+.|.+..+..- ..++.
T Consensus 132 ---ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~-LP~---------~LP~SLk~L~ls~n~~~sLeI~~ 196 (426)
T PRK15386 132 ---NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII-LPE---------KLPESLQSITLHIEQKTTWNISF 196 (426)
T ss_pred ---chHhheecccccccccccccc--ccCCcccEEEecCCCccc-Ccc---------cccccCcEEEecccccccccCcc
Confidence 345666664322111110000 122567777777776442 221 12357777776553211 01222
Q ss_pred CcceecCCCcceEEeecCCCc
Q 000704 1279 GNYTFKFPCLEDLFVIECPNM 1299 (1342)
Q Consensus 1279 ~~~~~~~~sL~~L~i~~Cp~l 1299 (1342)
..++ +++ .|.+.+|-++
T Consensus 197 ~sLP---~nl-~L~f~n~lkL 213 (426)
T PRK15386 197 EGFP---DGL-DIDLQNSVLL 213 (426)
T ss_pred cccc---ccc-Eechhhhccc
Confidence 2222 455 7777777655
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.18 E-value=3.3e-05 Score=88.96 Aligned_cols=182 Identities=13% Similarity=0.070 Sum_probs=107.4
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe--cCCcCHHHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV--SQTPDLKRIRREIADQ 214 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~ 214 (1342)
....++|+++.++.+.+++.....+.+.++|..|+||||+|+.+.+..... .+.. .++.+ +...... ..++.+..
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~-~~~~-~~i~~~~~~~~~~~-~~~~~i~~ 91 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE-DWRE-NFLELNASDERGID-VIRNKIKE 91 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC-cccc-ceEEeccccccchH-HHHHHHHH
Confidence 345578999999999999887666778999999999999999999886422 2221 22322 2222211 11111111
Q ss_pred hCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecch-hhhhhhcCcCccEE
Q 000704 215 LGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYC 291 (1342)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~~~~~~~~ 291 (1342)
+....+ .....+-++++|++.... ..+.+...+......+++|+++... .+..........++
T Consensus 92 ~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 92 FARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 110000 001346689999986552 2333433333333456777766432 22111122344689
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 292 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
+.+++.++....+.+.+..... .--.+....+++.++|.+..+.
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999999988887742111 1124567788999999876543
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=3e-06 Score=95.36 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=92.7
Q ss_pred HhhcCCccEEEEEeeceeeeccchhhhhhhccccccceeeeCCCCCcchhhccCCccchhhcccceeeeecccCccccCC
Q 000704 1118 LQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVP 1197 (1342)
Q Consensus 1118 l~~l~~L~~L~l~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~ 1197 (1342)
+..+..++.|+|+.+.++++|. .+++|++|.+++|.+++.+++.. .++|+.|+|.+|.++..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~L------P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---------LPNELTEITIENCNNLTTLPGSI------PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---------CCCCCcEEEccCCCCcccCCchh------hhhhhheEccCccccccccc
Confidence 4456788888888337777753 46789999999999998875322 25899999999988877764
Q ss_pred CCcccCcccEEEEecCCCCccccchhhhhccccccEEEEcccccchhhhcCCCcccccccccccccccccccccccceee
Q 000704 1198 SSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFY 1277 (1342)
Q Consensus 1198 ~~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~ 1277 (1342)
+|+.|++. |.....+. .-.++|++|.+.++....... .....+++|+.|.+.+|..+. +|
T Consensus 113 ------sLe~L~L~-~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~-------lp~~LPsSLk~L~Is~c~~i~-LP 172 (426)
T PRK15386 113 ------SVRSLEIK-GSATDSIK-----NVPNGLTSLSINSYNPENQAR-------IDNLISPSLKTLSLTGCSNII-LP 172 (426)
T ss_pred ------ccceEEeC-CCCCcccc-----cCcchHhheeccccccccccc-------cccccCCcccEEEecCCCccc-Cc
Confidence 47777775 34433331 112467788886543211110 011245789999999998764 44
Q ss_pred cCcceecCCCcceEEeecCC
Q 000704 1278 SGNYTFKFPCLEDLFVIECP 1297 (1342)
Q Consensus 1278 ~~~~~~~~~sL~~L~i~~Cp 1297 (1342)
.+ ++ .+|+.|.+..+.
T Consensus 173 ~~-LP---~SLk~L~ls~n~ 188 (426)
T PRK15386 173 EK-LP---ESLQSITLHIEQ 188 (426)
T ss_pred cc-cc---ccCcEEEecccc
Confidence 32 33 789999997764
No 79
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.13 E-value=2e-06 Score=70.64 Aligned_cols=58 Identities=40% Similarity=0.615 Sum_probs=35.3
Q ss_pred CCCEEEccCCCCcccCc-ccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCCc
Q 000704 581 NLEILSLCCSDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTS 639 (1342)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~-~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 639 (1342)
+|++|++++|.++.+|. .+..+++|++|++++|. +..++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666666654 35666666666666554 556665556666666666666553
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.3e-05 Score=92.42 Aligned_cols=196 Identities=11% Similarity=0.100 Sum_probs=111.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--ceEEEEEecCCcCHHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--DEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
.+.+++|.+..+..|.+++...++ ..+-++|..|+||||+|+.+.+..--.... ....+ .....-..-+.|..
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 355688988889999999886665 466899999999999999997765311100 00000 00011111111110
Q ss_pred HhCCC---CCC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEe-cchhhhh
Q 000704 214 QLGLN---FCE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLV 281 (1342)
Q Consensus 214 ~l~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt-r~~~v~~ 281 (1342)
.-..+ .+. ....+.+.++.+... .++.-++|+|+|... ..++.+...+.......++|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 000 011122233333221 245668999999876 34555555554434455665544 4444443
Q ss_pred hhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 282 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
........+++++++.++....+.+.+......- -.+....|++.++|-+.-+..
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 3344457899999999999999988774221111 145577888999987755443
No 81
>PLN03150 hypothetical protein; Provisional
Probab=98.11 E-value=6.2e-06 Score=102.46 Aligned_cols=104 Identities=23% Similarity=0.405 Sum_probs=82.9
Q ss_pred CccEEEecCCCCC-cCCccCCCCCCCCEEEccCCCCCC-C-ccccCCCCCCEEEccCCCCc-ccCcccCCCCcccEEecc
Q 000704 536 KLRVLVLTRMKLL-TLPSSFCHLPNLESLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLS 611 (1342)
Q Consensus 536 ~Lr~L~L~~~~i~-~lp~~i~~L~~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~ 611 (1342)
.++.|+|+++.+. .+|..|+++.+|++|+|++|.+.. + +.++++++|++|+|++|.+. .+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4777888888887 678888888999999998888853 4 57888899999999988887 788888999999999999
Q ss_pred CCCCCCccCccccCC-CCCCCEEEccCCcc
Q 000704 612 NCSKLKVIPPNVISS-LSQLEELYLGNTSV 640 (1342)
Q Consensus 612 ~~~~l~~lp~~~l~~-L~~L~~L~l~~~~~ 640 (1342)
+|.....+|.. ++. +.++..+++.+|..
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCCcc
Confidence 88866678876 544 35677888777653
No 82
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=4.3e-05 Score=91.05 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=110.3
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
...+++|++..++.+.+++..+++ ..+-++|+.|+||||+|+.+++...-.. |.... ....-...+.+....
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINTNQ 86 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHcCC
Confidence 355688999999999999876554 4688999999999999999998764211 11110 111111111111111
Q ss_pred CCCC---CC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-Eecchhhhhhh
Q 000704 216 GLNF---CE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSE 283 (1342)
Q Consensus 216 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~~ 283 (1342)
..+. +. ....+.+..+..... .+++-++|+|++... ..++.+...+......+.+|+ |+....+....
T Consensus 87 h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI 166 (605)
T PRK05896 87 SVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTI 166 (605)
T ss_pred CCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHH
Confidence 0000 00 011122222222221 134557999998764 345555554443334555554 44444443322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVAR 340 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~i~~ 340 (1342)
......+++.+++.++....+...+...... --.+.+..+++.++|-+. |+..+-.
T Consensus 167 ~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~-Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 167 ISRCQRYNFKKLNNSELQELLKSIAKKEKIK-IEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HhhhhhcccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3345689999999999998888877321111 113457789999999664 4444443
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=5.1e-06 Score=103.18 Aligned_cols=82 Identities=32% Similarity=0.455 Sum_probs=58.9
Q ss_pred CCCEEEccCCCCCC-C-ccccCCCCCCEEEccCCCCc-ccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEc
Q 000704 559 NLESLCLDQCILGD-I-AIIGNLKNLEILSLCCSDIE-QLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYL 635 (1342)
Q Consensus 559 ~Lr~L~L~~~~i~~-l-~~i~~L~~L~~L~Ls~~~i~-~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l 635 (1342)
.++.|+|++|.+.. + +.+++|++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. +++|++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 36677777777653 2 56777777777777777776 67777777777777777777644456665 777777777777
Q ss_pred cCCccc
Q 000704 636 GNTSVE 641 (1342)
Q Consensus 636 ~~~~~~ 641 (1342)
++|.+.
T Consensus 498 s~N~l~ 503 (623)
T PLN03150 498 NGNSLS 503 (623)
T ss_pred cCCccc
Confidence 777665
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.09 E-value=2.8e-05 Score=96.41 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred CcccccchHHHHH---HHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHH
Q 000704 137 GHEFIESRESILN---DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIA 212 (1342)
Q Consensus 137 ~~~~~~gr~~~~~---~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~ 212 (1342)
....|+|++..+. .+...+.......+.++|++|+||||+|+.+++... .+| +.++... .+.++ +++
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f-----~~lna~~~~i~di-r~~- 96 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHF-----SSLNAVLAGVKDL-RAE- 96 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccc-----eeehhhhhhhHHH-HHH-
Confidence 3456788887764 455666666777889999999999999999998754 334 1111110 11111 111
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHh-cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEE--ecchh--hhhhhcC
Q 000704 213 DQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT--SRRRD--VLVSEMH 285 (1342)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliT--tr~~~--v~~~~~~ 285 (1342)
+......+. .+++.++|+|||+.. .+++.+...+ ..|+.++|+ |.+.. +......
T Consensus 97 ---------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~S 158 (725)
T PRK13341 97 ---------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVS 158 (725)
T ss_pred ---------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhc
Confidence 111111111 146789999999754 3455554332 246666663 34321 2121122
Q ss_pred cCccEEecCCCHHHHHHHHHHHhCC------CCCCccHHHHHHHHHHHhCCChH
Q 000704 286 CQNNYCVSVLNKEEAWSLFSKVVGN------CVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 286 ~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
....+.+++++.++...++.+.+.. .....--++..+.|++.+.|-.-
T Consensus 159 R~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 159 RSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred cccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 3467999999999999999887631 11111124556778888887654
No 85
>PRK08727 hypothetical protein; Validated
Probab=98.09 E-value=4.4e-05 Score=82.37 Aligned_cols=159 Identities=15% Similarity=0.076 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHH
Q 000704 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSER 227 (1342)
Q Consensus 148 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 227 (1342)
+..+.....+.....+.|+|..|+|||+||+.+++..... ...++|+++.+ ....+
T Consensus 29 ~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~---------------- 84 (233)
T PRK08727 29 LAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL---------------- 84 (233)
T ss_pred HHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH----------------
Confidence 3333333333333569999999999999999999886533 33556665422 11111
Q ss_pred HHHHHHHHhcCCcEEEEEcCCCCcc---cccccCCCCCC--CCCCcEEEEEecchhh---------hhhhcCcCccEEec
Q 000704 228 IMMLCNRLKREKKILVILDDIWTSL---DLERTGIPFGD--VHRGCKILVTSRRRDV---------LVSEMHCQNNYCVS 293 (1342)
Q Consensus 228 ~~~l~~~l~~~k~~LlvlDdv~~~~---~~~~l~~~l~~--~~~gs~iliTtr~~~v---------~~~~~~~~~~~~l~ 293 (1342)
....+.+ .+.-+||+||+.... .|......+.+ ...|..||+|++...- .. .+.....++++
T Consensus 85 -~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S-Rl~~~~~~~l~ 160 (233)
T PRK08727 85 -RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS-RLAQCIRIGLP 160 (233)
T ss_pred -HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH-HHhcCceEEec
Confidence 1122233 244589999986542 23221111111 1246679999985321 11 23335688999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 294 VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 294 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
+++.++-.+++++++.... -.--++....|++.++|-.-++
T Consensus 161 ~~~~e~~~~iL~~~a~~~~-l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 161 VLDDVARAAVLRERAQRRG-LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHHHH
Confidence 9999999999998773211 1112456778888887765544
No 86
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.08 E-value=3.2e-05 Score=93.67 Aligned_cols=194 Identities=14% Similarity=0.124 Sum_probs=111.3
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
.+..++|.+..++.|...+..+++. .+-++|..|+||||+|+.+++..--...+. ......-..-+.|...-
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQGR 86 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHcCC
Confidence 3556889999999999888866654 468999999999999999988764211100 00001111111111100
Q ss_pred CCCC---CC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-Eecchhhhhhh
Q 000704 216 GLNF---CE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSE 283 (1342)
Q Consensus 216 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~~ 283 (1342)
..+. +. ....+.+.++.+.+. .+++-++|+|++... ...+.+...+-......++|+ ||....+....
T Consensus 87 ~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 87 FVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred CCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 0000 00 011122223322221 367779999999766 345555444433334555554 55555554322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
......+++++++.++....+.+.+..... ..-.+....|++.++|.+..+..+
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQI-PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 334578999999999999999887632111 111345678999999988755444
No 87
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=5.6e-05 Score=78.99 Aligned_cols=160 Identities=16% Similarity=0.109 Sum_probs=96.1
Q ss_pred HHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC--------------------CCcceEEEEEec-CCcCHHHH
Q 000704 150 DILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVFAEVS-QTPDLKRI 207 (1342)
Q Consensus 150 ~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~ 207 (1342)
.+.+.+...++ ..+.++|+.|+||||+|+.+.+...-. .+.|. .++... ....+++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 34555555555 578999999999999999998876432 12222 222211 1122222
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecch-hhhhhhc
Q 000704 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEM 284 (1342)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~ 284 (1342)
.+++.+.+.... . .+.+-++|+||+... ..++.+...+......+.+|++|++. .+.....
T Consensus 81 i~~i~~~~~~~~---------------~-~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 81 VRELVEFLSRTP---------------Q-ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred HHHHHHHHccCc---------------c-cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 222222221100 0 156778999998765 33555555554444566677777643 3322122
Q ss_pred CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
.....+++.+++.++..+.+.+. | .+ .+.++.|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g--i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G--IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C--CC----HHHHHHHHHHcCCCccc
Confidence 23468999999999998888776 3 11 45688999999998853
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=8.1e-05 Score=85.86 Aligned_cols=173 Identities=12% Similarity=0.050 Sum_probs=105.9
Q ss_pred cccccchHHHHHHHHHHHcCCC----------eEEEEEEcCCCCcHHHHHHHHHHHHhcC-------------------C
Q 000704 138 HEFIESRESILNDILDALRGPY----------VYMIGVYGMAGIGKTTLVKEVARLAKEG-------------------R 188 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~----------~~vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~ 188 (1342)
...++|.+..++.|..++..+. ..-+-++|+.|+||||+|+.+++..--. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3457899999999998887543 4568899999999999999998764311 1
Q ss_pred CcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCC
Q 000704 189 IFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPF 261 (1342)
Q Consensus 189 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l 261 (1342)
|.| +.++... ....+. .+..+.+... .+++-++|+|++.... ..+.+...+
T Consensus 84 hpD-~~~i~~~~~~i~i~---------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~L 141 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVD---------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAV 141 (394)
T ss_pred CCC-EEEeccccccCCHH---------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHh
Confidence 111 1222111 111222 2222322221 2466688889997762 333344334
Q ss_pred CCCCCCcEEEEEecc-hhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 262 GDVHRGCKILVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 262 ~~~~~gs~iliTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
-....+..+|++|.+ ..+..........+.+.+++.++..+.+.+..+- + .+.+..+++.++|.|.....+
T Consensus 142 Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~----~--~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 142 EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV----D--PETARRAARASQGHIGRARRL 213 (394)
T ss_pred hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC----C--HHHHHHHHHHcCCCHHHHHHH
Confidence 333345656665554 4444432334568999999999999888754331 1 345778999999999755433
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.07 E-value=3.5e-06 Score=69.13 Aligned_cols=57 Identities=33% Similarity=0.559 Sum_probs=26.8
Q ss_pred CccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCC-ccCCCCCCCCEEEccCC
Q 000704 511 HLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQC 568 (1342)
Q Consensus 511 ~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~ 568 (1342)
+|++|++.+|.. ..+|...|.++++|++|++++|.+..+| ..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444432 3444444455555555555555554443 23444444444444444
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7e-05 Score=87.99 Aligned_cols=181 Identities=10% Similarity=0.113 Sum_probs=111.9
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcC-------------------CCcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv 196 (1342)
.+.+++|.+..++.+.+.+..+++. .+-++|+.|+||||+|+.+++..--. ..+..++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 3556889998888888888766665 78999999999999999998753210 112223444
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEe
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt 274 (1342)
..+....+.++ ++|++..... -+ .+++-++|+|++... ...+.+...+....+.+++|++|
T Consensus 91 daas~~~vddI-R~Iie~~~~~---------------P~-~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 91 DAASNTSVDDI-KVILENSCYL---------------PI-SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred ecccCCCHHHH-HHHHHHHHhc---------------cc-cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 44333333332 2222221100 01 246678999998655 33555554454444566666655
Q ss_pred -cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 275 -RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 275 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
..+.+..........+.+.+++.++....+.+.+...... --.+..+.|++.++|-+..+
T Consensus 154 te~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~-i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 154 TEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE-HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 4444444333345678999999999999998887432111 11445678899999877543
No 91
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=4e-05 Score=92.13 Aligned_cols=178 Identities=11% Similarity=0.135 Sum_probs=108.1
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCC-------------------cceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv 196 (1342)
.+..++|.+..+..|..++...++ ..+.++|+.|+||||+|+.+.+...-... |..++.+
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 455788999999999999886654 46899999999999999999886431111 1111222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----hcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEE
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKI 270 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~i 270 (1342)
..+....+. .+.++.... ..+++-++|+|++.... ..+.+...+......+++
T Consensus 94 daAs~~gVd---------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 94 DAASNTGID---------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred eccccCCHH---------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 222222221 222222211 12567799999997653 233344334333345666
Q ss_pred EEEecc-hhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 271 LVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 271 liTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
|++|.+ ..+.....+....+.+.+++.++....+.+.+...... --.+..+.|++.++|.+.-+.
T Consensus 153 ILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~-id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 153 ILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA-YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHhCCCHHHHH
Confidence 666643 33333223344578888999999999998877321111 114567889999999885443
No 92
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=8.3e-05 Score=84.59 Aligned_cols=199 Identities=15% Similarity=0.057 Sum_probs=116.3
Q ss_pred CCCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCC--cceEEEEEecCCcCHHHHHHHH
Q 000704 135 NEGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI--FDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
+.....++|.++....+...+...+.+ .+-|+|+.|+||||+|+.+.+..--... +.... ...........+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHHH
Confidence 344566889999999999998866544 6899999999999999999987653110 11110 01111111122333
Q ss_pred HHHhCCC-------CC-------CCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcE-E
Q 000704 212 ADQLGLN-------FC-------EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK-I 270 (1342)
Q Consensus 212 ~~~l~~~-------~~-------~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~-i 270 (1342)
...-..+ .+ ..-..+.+..+.+.+. .+++.++|+|++.... ..+.+...+.....+.. |
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 2221100 00 0011234445555544 3577899999997663 33333333332223344 5
Q ss_pred EEEecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 271 LVTSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 271 liTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
++|++...+..........+++.+++.++..+++.+.... .. --.+....|++.++|.|..+..+.
T Consensus 176 Lit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555554444432334568999999999999999874321 11 113456789999999998665443
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.1e-05 Score=90.81 Aligned_cols=182 Identities=12% Similarity=0.157 Sum_probs=110.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCC-------------------CcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv 196 (1342)
.+.+++|.+..++.|.+++....++ .+-++|+.|+||||+|+.+.+..--.. .|..++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 3556889999999999999876655 578999999999999999998764211 12223333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEe
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS 274 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt 274 (1342)
..+....++++ +++++.+... -..++.-++|+|+|... ...+.+...+......+++|++|
T Consensus 94 daas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 33333333332 2233322111 01256778999999765 34554444444334556666554
Q ss_pred -cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 275 -RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 275 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
....+..........+++++++.++....+.+.+......- -.+....|++.++|-+.-+.
T Consensus 157 td~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 157 TDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred CChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHH
Confidence 44444432233356789999999988877776663211111 13446788889998875443
No 94
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=8.4e-07 Score=97.05 Aligned_cols=184 Identities=23% Similarity=0.203 Sum_probs=92.9
Q ss_pred cCceEEEecccCCCCCCC--c-CCCCCccEEEccCCCCCCCC-ChhhhcCCCCccEEEecCCCCCcCCcc--CCCCCCCC
Q 000704 488 KNCIAIFLHDINTGELPE--G-LEYPHLTSLCMNPKDPFLHI-PDNFFAGMPKLRVLVLTRMKLLTLPSS--FCHLPNLE 561 (1342)
Q Consensus 488 ~~~r~lsl~~~~~~~l~~--~-~~~~~Lr~L~l~~~~~~~~~-~~~~f~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~Lr 561 (1342)
+++|.+++.+......+. . ..|+++|.|++++|-+.... -..+...+++|+.|+++.|.+...-++ -..+.||+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 345555555544443332 1 15667777777665432211 122345567777777777665532221 13556777
Q ss_pred EEEccCCCCCC--C-ccccCCCCCCEEEccCCC-CcccCcccCCCCcccEEeccCCCCCCccCc-cccCCCCCCCEEEcc
Q 000704 562 SLCLDQCILGD--I-AIIGNLKNLEILSLCCSD-IEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYLG 636 (1342)
Q Consensus 562 ~L~L~~~~i~~--l-~~i~~L~~L~~L~Ls~~~-i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~l~~L~~L~~L~l~ 636 (1342)
.|.|++|.++. + .....+++|+.|+|.+|. +..--.+...++.|+.|||++|+.+ ..+. -..+.++.|+.|+++
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhcc
Confidence 77777776642 2 334456666666776662 2222223344566666777666633 3331 115666666666666
Q ss_pred CCcccccccccccccCCCChhhhcCCCCCCEEEeeccCCCC
Q 000704 637 NTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVI 677 (1342)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~ 677 (1342)
.|.+..... . ...........++|+.|.+..|.+..
T Consensus 280 ~tgi~si~~-~----d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 280 STGIASIAE-P----DVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred ccCcchhcC-C----CccchhhhcccccceeeecccCcccc
Confidence 665431000 0 01112223445566666666665543
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.04 E-value=0.0003 Score=82.26 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=110.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC--------------------CCcceEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVF 195 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~--------------------~~F~~~~w 195 (1342)
....++|.+..++.+.+++..... ..+-++|+.|+||||+|+.+.+..... .+++. ++
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 345678999999999999876554 467899999999999999998875421 12322 23
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEE
Q 000704 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1342)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliT 273 (1342)
+.-+....+.+ .+++...+... .. .+++-++|+|++... ...+.+...+......+.+|++
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~---------------p~-~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA---------------PS-SGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC---------------cc-cCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEE
Confidence 32221111111 12222221110 00 145668999998654 3345554444433456666666
Q ss_pred ecchh-hhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 274 SRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 274 tr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
|.+.. +..........+++.++++++....+..++..... .--.+.+..+++.++|.|..+....
T Consensus 154 ~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 154 TTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 65443 22222233457889999999999898887732111 1114567888999999987665443
No 96
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=0.00013 Score=83.52 Aligned_cols=194 Identities=15% Similarity=0.049 Sum_probs=112.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEE------EEEecCCcCHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV------FAEVSQTPDLKRIRR 209 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~~~ 209 (1342)
....++|.+..++.+.+.+..++++ .+-++|+.|+||+|+|..+.+..--........ =..+.... ..-+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hHHH
Confidence 4456889999999999998876655 588999999999999999988764211100000 00000000 0111
Q ss_pred HHHHHhCCC-------C-C------CCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcE
Q 000704 210 EIADQLGLN-------F-C------EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCK 269 (1342)
Q Consensus 210 ~i~~~l~~~-------~-~------~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~ 269 (1342)
.|...-..+ . . ..-..+.+.++.+.+. .+++.++|+||+...+ ....+...+.....++.
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 111100000 0 0 0011233444444443 2577799999997663 34444444433334666
Q ss_pred EEEEecch-hhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 270 ILVTSRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 270 iliTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
+|++|.+. .+..........+.+.+++.++..+++.+..+.. + ......+++.++|.|..+..+
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 66666654 3333223345689999999999999998765321 1 122267899999999866544
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00016 Score=87.42 Aligned_cols=184 Identities=14% Similarity=0.145 Sum_probs=109.6
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCC-------------------CcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv 196 (1342)
.+..++|.+..++.+..++...++. .+-++|+.|+||||+|+.+.+...-.. .|...+++
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 3456889999999999998866654 568999999999999999988763211 12222333
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEe
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS 274 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt 274 (1342)
..+....+.+ ++++++.+... -..+++-++|+|++.... ..+.+...+......+++|++|
T Consensus 94 ~~~~~~~vd~-ir~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 94 DAASNTQVDA-MRELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred eccccCCHHH-HHHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 2222222222 12222221110 002567799999997663 3444444444433456666555
Q ss_pred -cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHH
Q 000704 275 -RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1342)
Q Consensus 275 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~i 338 (1342)
..+.+..........+++++++.++....+.+.+...... .-.+..+.|++.++|.+. |+..+
T Consensus 157 ~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 157 TDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4443332112234678999999999998888776321111 123456789999999775 44443
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=5.9e-05 Score=88.46 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=112.9
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEE-ecCCcCHHHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 214 (1342)
....++|.+..++.|..++..++++ .+-++|+.|+||||+|+.+++...-....+...|.. +......-..-+.+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~ 93 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAG 93 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcC
Confidence 3456889999899999988876665 488999999999999999998774221111111110 00000000111111110
Q ss_pred hCCCC---C--CCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEe-cchhhhhh
Q 000704 215 LGLNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTS-RRRDVLVS 282 (1342)
Q Consensus 215 l~~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTt-r~~~v~~~ 282 (1342)
-..+. + .....+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++| +...+...
T Consensus 94 ~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 94 TSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHH
Confidence 00000 0 0011223333333332 246678999998765 35666655555444566666555 44444432
Q ss_pred hcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 283 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
.......+++.++++++....+...+.... ..--.+.++.|++.++|.+--+..
T Consensus 174 l~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 122345789999999999888888763211 111245678999999997754433
No 99
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.00 E-value=2.3e-05 Score=87.88 Aligned_cols=91 Identities=13% Similarity=0.187 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC--cCHHHHHHHHHHHhCCC-CCCCChH--H---HHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLN-FCEESDS--E---RIMML 231 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~-~~~~~~~--~---~~~~l 231 (1342)
-..++|+|++|.|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-.. .+..... . .+...
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 3578999999999999999999988744 8999999999866 78999999995433211 1111111 1 11111
Q ss_pred -HHHHhcCCcEEEEEcCCCCc
Q 000704 232 -CNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 232 -~~~l~~~k~~LlvlDdv~~~ 251 (1342)
.....++++++|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 22223589999999998544
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.00 E-value=7.2e-05 Score=80.80 Aligned_cols=163 Identities=15% Similarity=0.100 Sum_probs=97.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000704 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1342)
Q Consensus 146 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1342)
..+..+.++......+.+.|+|+.|+|||+||+.+++..... -..+.++++.....
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~---------------------- 86 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW---------------------- 86 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh----------------------
Confidence 344555555444455689999999999999999999876532 23556666543100
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCc---ccccccC-CCCCC-CCCC-cEEEEEecchhhh---------hhhcCcCccE
Q 000704 226 ERIMMLCNRLKREKKILVILDDIWTS---LDLERTG-IPFGD-VHRG-CKILVTSRRRDVL---------VSEMHCQNNY 290 (1342)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlvlDdv~~~---~~~~~l~-~~l~~-~~~g-s~iliTtr~~~v~---------~~~~~~~~~~ 290 (1342)
...++.+.+. +.-+|++||+... ..|+... ..+.. ...| .++|+||+..... . .+....++
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S-Rl~~g~~~ 162 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS-RLDWGQIY 162 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH-HHhCCcee
Confidence 0011222222 2247899999653 2343211 11111 1123 4799999855222 2 34455789
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 291 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
+++++++++-.+++.+++.... -.--+++..-|++.+.|-.-++..
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 9999999999999988773211 112256788888888876655443
No 101
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.99 E-value=2.6e-05 Score=86.17 Aligned_cols=289 Identities=20% Similarity=0.213 Sum_probs=174.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEE-EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV-FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
..+-+.++|.|||||||++-++.. .+ ..|..-. ++....-.+...+.-.+...++..... ....+..+..++.
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~--g~~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP--GDSAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhccccccc--chHHHHHHHHHHh-
Confidence 457899999999999999999998 44 4575555 444444445555555555556655432 2233445556665
Q ss_pred CCcEEEEEcCCCCccc-ccccCCCCCCCCCCcEEEEEecchhhhhhhcCcCccEEecCCCHH-HHHHHHHHHhC----CC
Q 000704 238 EKKILVILDDIWTSLD-LERTGIPFGDVHRGCKILVTSRRRDVLVSEMHCQNNYCVSVLNKE-EAWSLFSKVVG----NC 311 (1342)
Q Consensus 238 ~k~~LlvlDdv~~~~~-~~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~----~~ 311 (1342)
++|.++|+||..+..+ -..+...+..+...-.|+.|+|.... +.....+.+.+|+.. ++.++|...+. ..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 7999999999876522 12222223334445578888887653 334566778887754 79999988872 11
Q ss_pred CCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHH----HHHHHHHhhcccCCc--chHHHHHhHHHHHhcccCcc
Q 000704 312 VEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVW----KKALQELRFSARNFT--GLEALLGSTIELIYNYLEGE 385 (1342)
Q Consensus 312 ~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w----~~~l~~l~~~~~~~~--~~~~~~~~~l~~sy~~L~~~ 385 (1342)
.-...-...+.+|.++..|.|++|...++..+.-...+- .+-...+.. ..... ...... +.+..||.-|...
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~-~~r~a~~~~qtl~-asl~ws~~lLtgw 240 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTG-GARLAVLRQQTLR-ASLDWSYALLTGW 240 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhc-ccccchhHHHhcc-chhhhhhHhhhhH
Confidence 112233567889999999999999999998876544321 111111110 01111 111245 8899999999987
Q ss_pred hhHHHHHhhccCCCCCCccHHHHHHHhhccccccccccHHHHHHHHHHHHHhHhhccccccCC--ccchhhhhhHHHHHH
Q 000704 386 ELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRNVA 463 (1342)
Q Consensus 386 ~lk~cfl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mhdlv~~~a 463 (1342)
-+--|--++.|... |.-+ ...|.+.|-.... + .-.+..-+..+++.+++...+ ..-.|+.-+-+|.|+
T Consensus 241 -e~~~~~rLa~~~g~--f~~~--l~~~~a~g~~~~~----~-~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 241 -ERALFGRLAVFVGG--FDLG--LALAVAAGADVDV----P-RYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred -HHHHhcchhhhhhh--hccc--HHHHHhcCCcccc----c-hHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 48888888888873 3332 2234333322100 0 001112255677888775432 233677777777777
Q ss_pred HHhhhc
Q 000704 464 ISIASI 469 (1342)
Q Consensus 464 ~~~~~~ 469 (1342)
..+-.+
T Consensus 311 laeL~r 316 (414)
T COG3903 311 LAELHR 316 (414)
T ss_pred HHHHHh
Confidence 765544
No 102
>PRK09087 hypothetical protein; Validated
Probab=97.98 E-value=7.2e-05 Score=79.82 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=85.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..+.+.|+|..|+|||+|++.+++.... .+++.. .+..++ ...+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~--------------------~~~~~-- 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA--------------------ANAAA-- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH--------------------HHhhh--
Confidence 3467999999999999999988875431 133221 111111 11111
Q ss_pred CcEEEEEcCCCCcc----cccccCCCCCCCCCCcEEEEEecch---------hhhhhhcCcCccEEecCCCHHHHHHHHH
Q 000704 239 KKILVILDDIWTSL----DLERTGIPFGDVHRGCKILVTSRRR---------DVLVSEMHCQNNYCVSVLNKEEAWSLFS 305 (1342)
Q Consensus 239 k~~LlvlDdv~~~~----~~~~l~~~l~~~~~gs~iliTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 305 (1342)
.-+|++||+.... .+-.+...+ ...|..||+|++.. .... .+.....+++++++.++-.++++
T Consensus 88 -~~~l~iDDi~~~~~~~~~lf~l~n~~--~~~g~~ilits~~~p~~~~~~~~dL~S-Rl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 88 -EGPVLIEDIDAGGFDETGLFHLINSV--RQAGTSLLMTSRLWPSSWNVKLPDLKS-RLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred -cCeEEEECCCCCCCCHHHHHHHHHHH--HhCCCeEEEECCCChHHhccccccHHH-HHhCCceeecCCCCHHHHHHHHH
Confidence 1378889995431 111111111 12467799988742 2222 35556789999999999999999
Q ss_pred HHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 306 KVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
+++.... -.--+++.+.|++.+.|..-++..
T Consensus 164 ~~~~~~~-~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 164 KLFADRQ-LYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHhhhhHHHHHH
Confidence 9884321 111256778888888877766554
No 103
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.96 E-value=9.6e-07 Score=108.79 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=69.5
Q ss_pred CCCCcEEEEecccccccccchhHHhhcccCcEEEEecc-cccccccccccccccccccccCcccccccccCccccccccc
Q 000704 939 IQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHC-TVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPG 1017 (1342)
Q Consensus 939 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~I~~c-~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 1017 (1342)
++.|+.|.+.+|..+............+.|++|++++| ......... .......+++|+.|+++.|..+++..-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLL----LLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhH----hhhhhhhcCCcCccchhhhhccCchhHH
Confidence 56777777777777766332345677788888888774 222111100 0012223577777777777766555444
Q ss_pred cccccCCccceeEeecCCceeeeccccccCCCcchhcccccccccchhhhhhhcccceeeeeccc
Q 000704 1018 IHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGK 1082 (1342)
Q Consensus 1018 ~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 1082 (1342)
.....|++|++|.+.+|..++ ..++..+...+++|++|+|+.|
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt----------------------~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLT----------------------DEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred HHHhhCCCcceEccCCCCccc----------------------hhHHHHHHHhcCcccEEeeecC
Confidence 334346777777777777642 2334445555666777777776
No 104
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.96 E-value=2.4e-05 Score=81.90 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=34.6
Q ss_pred ccchHHHHHHHHHHHc---CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 000704 141 IESRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 187 (1342)
|+||+++++++...+. ....+.+.|+|.+|+|||+|++.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 7899999999999993 4567899999999999999999999988755
No 105
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00023 Score=89.48 Aligned_cols=177 Identities=13% Similarity=0.059 Sum_probs=108.9
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCc---------------------ceEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIF---------------------DEVV 194 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---------------------~~~~ 194 (1342)
.+..++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+...-.... ..++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ 92 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVT 92 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEE
Confidence 3556889999999999998876665 57899999999999999999877421111 0112
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----hcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCc
Q 000704 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTS--LDLERTGIPFGDVHRGC 268 (1342)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs 268 (1342)
++.-.....+. .+..+.+++ ..+++-++|||++... ..++.|...+..-...+
T Consensus 93 eidaas~~~Vd---------------------~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 93 EIDAASHGGVD---------------------DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred EecccccCCHH---------------------HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 22211111222 222222221 1256668899999776 34555555554444566
Q ss_pred EEEEEe-cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 269 KILVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 269 ~iliTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
.+|++| ....+..........|++..++.++....+.+.+....... -.+....|++.++|-+..+
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 666555 44444432233456899999999999888887763211111 1344678899999988443
No 106
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00014 Score=88.42 Aligned_cols=196 Identities=16% Similarity=0.145 Sum_probs=109.1
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEE-ecCCcCHHHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE-VSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~~ 214 (1342)
....++|.+..+..|.+++..+.+. .+.++|+.|+||||+|+.+++..--...++.-.|.. +......-..-+.+...
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g 93 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAG 93 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhcc
Confidence 3556889999999998888766654 588999999999999999998764321111001110 00000111111111110
Q ss_pred hCCC---CC--CCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEE-Eecchhhhhh
Q 000704 215 LGLN---FC--EESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILV-TSRRRDVLVS 282 (1342)
Q Consensus 215 l~~~---~~--~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~ 282 (1342)
-..+ .+ .....+.+..+.+.+. .+++-++|+|++.... ..+.+...+......+.+|+ |++...+...
T Consensus 94 ~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~T 173 (620)
T PRK14954 94 TSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173 (620)
T ss_pred CCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0000 00 0011223333333331 2566789999987653 35555555544334555554 4444444432
Q ss_pred hcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000704 283 EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 283 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
.......+++.+++.++....+.+.+..... .--.+.++.|++.++|-.-
T Consensus 174 I~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHH
Confidence 2334668999999999988888776631110 1114567889999999554
No 107
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.92 E-value=9.2e-05 Score=86.18 Aligned_cols=176 Identities=19% Similarity=0.218 Sum_probs=101.6
Q ss_pred CCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC
Q 000704 135 NEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1342)
......+.|+++.++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+..
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~~- 189 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVVG- 189 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecch-
Confidence 3345567899999988887763 1 1245689999999999999999998765 233 22221
Q ss_pred cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc----------------cccccCCCCC--C
Q 000704 202 PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------------DLERTGIPFG--D 263 (1342)
Q Consensus 202 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~----------------~~~~l~~~l~--~ 263 (1342)
.++.... ++ .....+..+.+......+.+|++||++... .+..+...+. .
T Consensus 190 ---~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 ---SELVRKY---IG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred ---HHHHHHh---hh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 1111111 11 011223333444433577899999986541 0111111111 1
Q ss_pred CCCCcEEEEEecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000704 264 VHRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 264 ~~~gs~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1342)
...+.+||.||......+... .-...+.+...+.++..++|+.++.......+. -...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 224677888887543322111 224578999999999999999887432211111 1356777777754
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00024 Score=83.12 Aligned_cols=180 Identities=12% Similarity=0.125 Sum_probs=104.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC------CCcceEE-EEEecCCcCHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------RIFDEVV-FAEVSQTPDLKRIR 208 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~------~~F~~~~-wv~vs~~~~~~~~~ 208 (1342)
....++|.+..++.+.+++..... +.+-++|+.|+||||+|+.+.+..... ..|...+ -+.......+.+ .
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-i 93 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD-I 93 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-H
Confidence 345678999999999999886554 488899999999999999998776421 1122111 111111111111 1
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEe-cchhhhhhhcC
Q 000704 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS-RRRDVLVSEMH 285 (1342)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-r~~~v~~~~~~ 285 (1342)
+++++.+... .. .+++-++|+|++.... .++.+...+......+.+|++| +...+......
T Consensus 94 ~~l~~~~~~~---------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s 157 (367)
T PRK14970 94 RNLIDQVRIP---------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS 157 (367)
T ss_pred HHHHHHHhhc---------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh
Confidence 1222221100 01 1456689999986542 3555443333323345555554 43333322233
Q ss_pred cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 286 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
....++++++++++....+...+..... .--.+.++.+++.++|-+-.
T Consensus 158 r~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 158 RCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred cceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHH
Confidence 3457899999999999888887632111 11145677888889886653
No 109
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00027 Score=86.62 Aligned_cols=180 Identities=13% Similarity=0.132 Sum_probs=111.6
Q ss_pred cccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHh---------------------cCCCcceEEE
Q 000704 138 HEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAK---------------------EGRIFDEVVF 195 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~---------------------~~~~F~~~~w 195 (1342)
...++|.+..++.|..++....+. .+-++|+.|+||||+|+.+.+... ...+|+.. .
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~ 94 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-E 94 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-E
Confidence 456889999999999999876655 578999999999999999888653 12234432 2
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-
Q 000704 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV- 272 (1342)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili- 272 (1342)
+..+....+.++. ++++++.... . .+++-++|+|++... ..++.+...+.....++.+|+
T Consensus 95 ld~~~~~~vd~Ir-~li~~~~~~P---------------~-~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~ 157 (614)
T PRK14971 95 LDAASNNSVDDIR-NLIEQVRIPP---------------Q-IGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157 (614)
T ss_pred ecccccCCHHHHH-HHHHHHhhCc---------------c-cCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 2222222222222 2222221100 0 146668899998765 345556555544445666555
Q ss_pred EecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 273 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
||+...+..........+++.+++.++....+.+.+..... .--.+.+..|++.++|-.--+.
T Consensus 158 tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred eCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 44555554422334568999999999999998887732111 1113457889999999765443
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00018 Score=86.46 Aligned_cols=198 Identities=11% Similarity=0.082 Sum_probs=111.4
Q ss_pred CcccccchHHHHHHHHHHHcCCC-eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPY-VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~-~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..++.|..++...+ ...+-++|+.|+||||+|+.+.+..--....+. ..++.-+.-+.|....
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVTQGM 86 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHhcCC
Confidence 34567898888888888887655 467888999999999999999987642111000 0001111111111110
Q ss_pred CCCC---CC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc-hhhhhhh
Q 000704 216 GLNF---CE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSE 283 (1342)
Q Consensus 216 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~ 283 (1342)
..+. +. ....+.+..+.+.+. .+++-++|+|++... ..++.+...+........+|++|.. ..+....
T Consensus 87 hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 87 HVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred CCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 0000 00 001112222222221 256779999999765 3455555444333334555555544 4444322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh-HHHHHHHHHh
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTVARTL 342 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~i~~~l 342 (1342)
......+++++++.++....+.+.+..... .--.+.++.|++.++|-+ .|+..+..++
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233457899999999999888887632111 111456788999999965 6777766554
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00018 Score=87.43 Aligned_cols=197 Identities=11% Similarity=0.127 Sum_probs=113.0
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcce--EEEEEecCCcCHHHHHHHHH
Q 000704 136 EGHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDE--VVFAEVSQTPDLKRIRREIA 212 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~~~~i~ 212 (1342)
..+..++|.+..++.|.+++..+++. .+-++|+.|+||||+|+.+++...-...... ..+- ....-.--+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHh
Confidence 34567889999999999998866654 6889999999999999999987542111100 0000 000001111111
Q ss_pred HHhCCCC-----CCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEe-cchhhh
Q 000704 213 DQLGLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS-RRRDVL 280 (1342)
Q Consensus 213 ~~l~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-r~~~v~ 280 (1342)
..-..+. ......+.+.++.+.+. .+++-++|+|++.... ..+.+...+-....++++|++| ....+.
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhh
Confidence 1111100 00111223333333322 2466689999986653 3555554444444566666544 444444
Q ss_pred hhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 281 VSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 281 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
.........+++..++.++....+.+.+...... --.+..+.|++.++|-+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~-i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE-VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 3223345679999999999999998877321111 1135678889999998865544
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.5e-05 Score=59.54 Aligned_cols=40 Identities=35% Similarity=0.537 Sum_probs=24.6
Q ss_pred CccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCcc
Q 000704 536 KLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI 575 (1342)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~ 575 (1342)
+|++|++++|.|..+|..+++|++|++|++++|.+++++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 5666677777666666666666666666666666655443
No 113
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.1e-07 Score=91.95 Aligned_cols=88 Identities=19% Similarity=0.096 Sum_probs=50.9
Q ss_pred cceeeeecccccceeccCCCCccccccccEEEEecCCCCCCcHHHHhhcCCccEEEEE-eeceeeeccchhhhhhhcccc
Q 000704 1073 HLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKNLEKLELR-WSSYKQIFSYKEAEKHAGKLT 1151 (1342)
Q Consensus 1073 ~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~L~~L~l~-c~~l~~l~~~~~~~~~~~~l~ 1151 (1342)
.|+.||+++..++.-.- +.....+..|+.|.+.+..++.-....+..-.+|+.|+|+ |+++++-. ..-.+..++
T Consensus 186 Rlq~lDLS~s~it~stl-~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~----~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL-HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA----LQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHH-HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH----HHHHHHhhh
Confidence 47778888775543211 1112346677777777777666555555556677777777 77665431 111233566
Q ss_pred ccceeeeCCCCCcc
Q 000704 1152 HIKSLKLWELSDLM 1165 (1342)
Q Consensus 1152 ~L~~L~l~~c~~L~ 1165 (1342)
.|.+|+|+.|....
T Consensus 261 ~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 261 RLDELNLSWCFLFT 274 (419)
T ss_pred hHhhcCchHhhccc
Confidence 66666666665443
No 114
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.00024 Score=86.61 Aligned_cols=179 Identities=13% Similarity=0.155 Sum_probs=107.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCC---cc-------------eEEEEEec
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRI---FD-------------EVVFAEVS 199 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---F~-------------~~~wv~vs 199 (1342)
....++|.+..++.+..++...++ ..+-++|+.|+||||+|+.+++..--... +. .++++...
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaa 95 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAA 95 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecc
Confidence 355688999999999999886554 45689999999999999999876532110 00 00111110
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcE-EEE
Q 000704 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-ILV 272 (1342)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-ili 272 (1342)
... ..+.+.++.+.+. .+++-++|+|++... ..+..+...+-....... |++
T Consensus 96 sn~---------------------~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 96 SNN---------------------GVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred ccC---------------------CHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEE
Confidence 001 1222333333332 256779999998655 345555544433334445 445
Q ss_pred EecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 273 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
||+...+..........+.+.+++.++....+...+...... .-.+.++.|++.++|-+.-+..
T Consensus 155 Tte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~-id~eAl~~LA~lS~GslR~Als 218 (725)
T PRK07133 155 TTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS-YEKNALKLIAKLSSGSLRDALS 218 (725)
T ss_pred cCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 555555543223345689999999999998888766321111 1134577899999997754433
No 115
>PF14516 AAA_35: AAA-like domain
Probab=97.83 E-value=0.0017 Score=74.13 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=118.0
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-----cCHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-----PDLKRIRREIA 212 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~ 212 (1342)
..-++.|...-+++.+.+.++ -..+.|.|+-.+|||+|...+.+..+.. .+.+ +++++..- .+..+.++.++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~~-v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYRC-VYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCEE-EEEEeecCCCcccCCHHHHHHHHH
Confidence 344678886777788877653 3589999999999999999999888743 4443 46766542 24555555554
Q ss_pred ----HHhCCCCCC-------C-ChHHHHHHHHHHHh-c-CCcEEEEEcCCCCcccc----cccCCCC----CC---CC-C
Q 000704 213 ----DQLGLNFCE-------E-SDSERIMMLCNRLK-R-EKKILVILDDIWTSLDL----ERTGIPF----GD---VH-R 266 (1342)
Q Consensus 213 ----~~l~~~~~~-------~-~~~~~~~~l~~~l~-~-~k~~LlvlDdv~~~~~~----~~l~~~l----~~---~~-~ 266 (1342)
++++....- . +.......+.+.+. + +++.+|++|+|+..-.. +++...+ .. .. -
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 444433210 0 11111111222222 1 58999999998755210 1111110 00 00 0
Q ss_pred Cc-E-EEEE-ecchhhhh---hhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHH
Q 000704 267 GC-K-ILVT-SRRRDVLV---SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVAR 340 (1342)
Q Consensus 267 gs-~-iliT-tr~~~v~~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~ 340 (1342)
.. + |++. |+.....+ +.+.....+.|++++.+|...|..++-.. .. ....++|....||+|.-+..++.
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-~~----~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-FS----QEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-CC----HHHHHHHHHHHCCCHHHHHHHHH
Confidence 11 1 2221 11111111 12334567999999999999998876322 11 22388999999999999999999
Q ss_pred HhcCC
Q 000704 341 TLRNK 345 (1342)
Q Consensus 341 ~l~~~ 345 (1342)
.+...
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 99654
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.00033 Score=84.60 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=111.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCc---------------------ceEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIF---------------------DEVV 194 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---------------------~~~~ 194 (1342)
....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-.... ..++
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 3556889999999999999876655 46899999999999999999865421111 0112
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCc
Q 000704 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGC 268 (1342)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs 268 (1342)
.+..+.... .+.+.++.+... .+++-++|+|++... ...+.+...+.......
T Consensus 91 eidaas~~g---------------------vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 91 ELDAASHGG---------------------VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred EeccccccC---------------------HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 221111111 122222222221 256678999998755 34555544444434455
Q ss_pred EEEE-EecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHHHHHh
Q 000704 269 KILV-TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTVARTL 342 (1342)
Q Consensus 269 ~ili-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~i~~~l 342 (1342)
.+|+ ||....+..........+++.+++.++..+.+.+.+...... --.+....|++..+|-+. |+..+-.++
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~-i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV-VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5554 555555443223345689999999999988888776321111 113456778899999774 444544444
No 117
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.0004 Score=82.51 Aligned_cols=183 Identities=13% Similarity=0.127 Sum_probs=109.2
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCC--------------------CcceEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVF 195 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~w 195 (1342)
....++|.+...+.+..++...+.+ +.-++|+.|+||||+|+.+.+..--.. |++ +++
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~e 90 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIE 90 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEE
Confidence 3556889998899999988866655 568999999999999999887753111 111 122
Q ss_pred EEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEE
Q 000704 196 AEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVT 273 (1342)
Q Consensus 196 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliT 273 (1342)
+..+....+.++. ++++.... .-..+++-++|+|++... +..+.+...+-.....+++|++
T Consensus 91 ldaas~~gId~IR-elie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 91 MDAASNRGIDDIR-ELIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred eccccccCHHHHH-HHHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 2211111122221 11111100 000146678999999765 3344444444333456676666
Q ss_pred ecch-hhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 274 SRRR-DVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 274 tr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
|.+. .+..........+++.+++.++....+.+.+...... --.+.++.|++.++|-+.-+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~-i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS-YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHH
Confidence 6543 3322122335689999999999999888777322111 12456788999999988655444
No 118
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.0011 Score=74.37 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=119.3
Q ss_pred CcccccchHHHHHHHHHHHc----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIA 212 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 212 (1342)
.+.++.||+.+++.+.+|+. ....+-+-|.|-+|.|||.+...|+.+......=..++++..-.-.....+...|.
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 34568899999999998886 34567899999999999999999999876322112445665554456778888888
Q ss_pred HHhCCCCCCCC-hHHHHHHHHHHHhcCC-cEEEEEcCCCCcc--cccccCCCCC-CCCCCcEEEEEecchh--hhhh---
Q 000704 213 DQLGLNFCEES-DSERIMMLCNRLKREK-KILVILDDIWTSL--DLERTGIPFG-DVHRGCKILVTSRRRD--VLVS--- 282 (1342)
Q Consensus 213 ~~l~~~~~~~~-~~~~~~~l~~~l~~~k-~~LlvlDdv~~~~--~~~~l~~~l~-~~~~gs~iliTtr~~~--v~~~--- 282 (1342)
..+........ ..+-...+.....+.+ -+++|+|.++... .-..+...|- ..-+++|+|+.---.. ..+.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 77732222221 1222333444444334 6899999986542 1111111111 1224666555322111 1111
Q ss_pred -----hcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhC----CChHHHHHHHHH
Q 000704 283 -----EMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECG----GLPIAILTVART 341 (1342)
Q Consensus 283 -----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~----glPlai~~i~~~ 341 (1342)
..-....+...|.+.++-.++|..+..............+.+|+|+. .+--|+-+.-++
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 01124578889999999999999998543333333334444555554 344444444333
No 119
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=1.7e-06 Score=100.10 Aligned_cols=100 Identities=24% Similarity=0.291 Sum_probs=53.8
Q ss_pred CCEEEccCCCCCCC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEEEccCC
Q 000704 560 LESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1342)
Q Consensus 560 Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1342)
|.+-+.++|.+..+ +++.-+++|+.|||++|++++.. .+..|.+|+||||++|. +..+|.-...... |+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhh-heeeeeccc
Confidence 33334444444444 45555666666666666665543 55566666666666655 5555542222222 666666665
Q ss_pred cccccccccccccCCCChhhhcCCCCCCEEEeeccCC
Q 000704 639 SVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1342)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1342)
.+. .+.++.+|.+|+.|+++.|-+
T Consensus 243 ~l~-------------tL~gie~LksL~~LDlsyNll 266 (1096)
T KOG1859|consen 243 ALT-------------TLRGIENLKSLYGLDLSYNLL 266 (1096)
T ss_pred HHH-------------hhhhHHhhhhhhccchhHhhh
Confidence 543 344555556666666655533
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00052 Score=84.58 Aligned_cols=193 Identities=10% Similarity=0.064 Sum_probs=110.8
Q ss_pred cccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
...++|.+..++.|..++....+ ..+.++|+.|+||||+|+.+++.......+. .....+.....+.|....+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 45688999999999888876554 4568999999999999999998764211100 0001111222233322211
Q ss_pred CCC---C--CCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc-hhhhhhhc
Q 000704 217 LNF---C--EESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEM 284 (1342)
Q Consensus 217 ~~~---~--~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~~ 284 (1342)
.+. + .....+.+..+.+.+. .+++-++|+|++... ...+.+...+......+.+|++|.+ ..+.....
T Consensus 89 ~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~ 168 (585)
T PRK14950 89 VDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL 168 (585)
T ss_pred CeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH
Confidence 110 0 0111222333333222 146778999998655 3455554444433345666665543 33333222
Q ss_pred CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
.....+.+..++.++....+.+.+...... --.+.+..|++.++|.+..+..
T Consensus 169 SR~~~i~f~~l~~~el~~~L~~~a~~egl~-i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 169 SRCQRFDFHRHSVADMAAHLRKIAAAEGIN-LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred hccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 334578899999999988888877422111 1145678899999998865443
No 121
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.76 E-value=0.00081 Score=72.66 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHcC---CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc----eEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 145 ESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD----EVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 145 ~~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
.+.++++-+++.. ...+-+.|||.+|+|||++++++.........=+ .++.|.....++..++...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4456666666653 3456799999999999999999998665321111 47778888999999999999999998
Q ss_pred CCCCCChHHH-HHHHHHHHhcCCcEEEEEcCCCCcc-----cccccC---CCCCCCCCCcEEEEEecchhhhhh----hc
Q 000704 218 NFCEESDSER-IMMLCNRLKREKKILVILDDIWTSL-----DLERTG---IPFGDVHRGCKILVTSRRRDVLVS----EM 284 (1342)
Q Consensus 218 ~~~~~~~~~~-~~~l~~~l~~~k~~LlvlDdv~~~~-----~~~~l~---~~l~~~~~gs~iliTtr~~~v~~~----~~ 284 (1342)
.......... .....+-+..-+--+||+|++.+.- +-..+. ..+.+.-.=+-|.|-|+...-+-. .-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 7654333322 2333344444577799999997641 111111 112222233456666665433321 11
Q ss_pred CcCccEEecCCCHHHHH-HHHHHHh---C-CCCCCccHHHHHHHHHHHhCCChH
Q 000704 285 HCQNNYCVSVLNKEEAW-SLFSKVV---G-NCVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~-~lf~~~~---~-~~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
....++.+.....++-+ .|+.... . .....-...++++.|...++|+.=
T Consensus 203 ~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 203 SRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred hccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 12346677766654443 4433222 1 122223447899999999999763
No 122
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.7e-06 Score=89.68 Aligned_cols=114 Identities=18% Similarity=0.105 Sum_probs=56.9
Q ss_pred CcccccccccCccccccccccccccCCccceeEeecCCceeeeccccccCCCcchhcccccccccchhhhhhhcccceee
Q 000704 998 PKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEEL 1077 (1342)
Q Consensus 998 ~~L~~L~l~~c~~L~~~~~~~~~~~~~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 1077 (1342)
..|+.|+|+.|..++..........|..|++|+++.|.--+.. .-..+...-++|+.|
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~----------------------Vtv~V~hise~l~~L 291 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK----------------------VTVAVAHISETLTQL 291 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh----------------------hhHHHhhhchhhhhh
Confidence 4566666666666665544444445677777777777432110 001122334567777
Q ss_pred eeccc--ccceeccCCCCccccccccEEEEecCC-CCCCcHHHHhhcCCccEEEEE-eece
Q 000704 1078 KLSGK--DITMIREGRLPTYLFQNLKILEVVNDK-SDNFPICFLQYFKNLEKLELR-WSSY 1134 (1342)
Q Consensus 1078 ~l~~~--~l~~~~~~~~~~~~l~~L~~L~l~~c~-~~~~~~~~l~~l~~L~~L~l~-c~~l 1134 (1342)
+|++| ++-.-.. ..-...+|+|.+|++++|. ++.--...+..|+.|+.|.++ |..+
T Consensus 292 NlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 292 NLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hhhhhHhhhhhhHH-HHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence 77777 3221110 0111235566666666655 333223344445555555555 5543
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00076 Score=80.43 Aligned_cols=181 Identities=12% Similarity=0.087 Sum_probs=106.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcC-------------------CCcceEEEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFA 196 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv 196 (1342)
....++|.+..+..+.+++....+. .+.++|+.|+||||+|+.++....-. ..|...+++
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 3456789999999999998865544 56789999999999999998865310 011112222
Q ss_pred EecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEE
Q 000704 197 EVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKI 270 (1342)
Q Consensus 197 ~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~i 270 (1342)
..+....+ +.+..+.+... .+++-++|+|++... ...+.+...+........+
T Consensus 94 daas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 94 DAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred eCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22111111 11222222221 257779999998755 3344444444433344555
Q ss_pred EEEe-cchhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 271 LVTS-RRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 271 liTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
|++| +...+..........+.+.+++.++....+.+++..... .--.+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5544 444433322233457899999999998888887632111 1113456788889999776544433
No 124
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.75 E-value=8e-05 Score=85.17 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=72.3
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC
Q 000704 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF 219 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 219 (1342)
.+++.+...+.++..|.. .+.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++..+-.. +...
T Consensus 176 d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vgy 252 (459)
T PRK11331 176 DLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVGF 252 (459)
T ss_pred cccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCCe
Confidence 456677888888888864 3468889999999999999999988766678899999999999888776432110 0000
Q ss_pred CCCChHHHHHHHHHHHhc--CCcEEEEEcCCCCc
Q 000704 220 CEESDSERIMMLCNRLKR--EKKILVILDDIWTS 251 (1342)
Q Consensus 220 ~~~~~~~~~~~l~~~l~~--~k~~LlvlDdv~~~ 251 (1342)
. -.....-++.....+ ++++++|+|++...
T Consensus 253 ~--~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 R--RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred E--ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 000111122222221 47899999998654
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.75 E-value=0.00013 Score=77.51 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=93.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1342)
...+.|+|..|+|||.|.+++++.......=..+++++ .+++.+.+...+... ....+...+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 34578999999999999999999876432222455653 456666666655431 1233445553 5
Q ss_pred cEEEEEcCCCCcc---cccc-cCCCCCC-CCCCcEEEEEecchhhhhh--------hcCcCccEEecCCCHHHHHHHHHH
Q 000704 240 KILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 240 ~~LlvlDdv~~~~---~~~~-l~~~l~~-~~~gs~iliTtr~~~v~~~--------~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
-=+|++|||.... .|.. +...+.. ...|-+||+|++.....-. .+...-++++++++.++-.+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 5578999997652 2322 1111111 1246689999965422110 344566899999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
+|....- .--+++++-|++.+.+..-.+
T Consensus 178 ~a~~~~~-~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 178 KAKERGI-ELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHhCC-CCcHHHHHHHHHhhcCCHHHH
Confidence 8842111 122566777777776655443
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00063 Score=80.61 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=107.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCcceEE
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG---------------------RIFDEVV 194 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~---------------------~~F~~~~ 194 (1342)
....++|.+..++.+.+++....+ ..+-++|+.|+||||+|+.+.+..--. .+++ .+
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 355688999999999999886665 568899999999999999998876421 1122 11
Q ss_pred EEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE
Q 000704 195 FAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV 272 (1342)
Q Consensus 195 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili 272 (1342)
++.-.....+.++ +++.+.+. ..-..+++-++|+|++... ...+.+...+.....+..+|+
T Consensus 94 ~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 94 EIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred EeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 1211111111111 11211111 0001256778999998654 234444444444334666666
Q ss_pred Eec-chhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH-HHHHH
Q 000704 273 TSR-RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI-AILTV 338 (1342)
Q Consensus 273 Ttr-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl-ai~~i 338 (1342)
+|. ...+..........+++.++++++....+.+.+..... .--.+.++.|++.++|-+. |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 653 33333212333567899999999998888877632111 1114567889999999664 44433
No 127
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.00068 Score=80.29 Aligned_cols=164 Identities=16% Similarity=0.169 Sum_probs=102.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
.-+.|+|..|+|||+|++.+++.......-..++++ +.+++...+...+... ......+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~------~~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKT------HKEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHh------hhHHHHHHHHhc--cC
Confidence 468999999999999999999976532222234444 3456777777665421 022333444442 44
Q ss_pred EEEEEcCCCCcc---cc-cccCCCCCC-CCCCcEEEEEecchh---------hhhhhcCcCccEEecCCCHHHHHHHHHH
Q 000704 241 ILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 241 ~LlvlDdv~~~~---~~-~~l~~~l~~-~~~gs~iliTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
-+||+||+.... .+ +.+...+.. ...|..||+|+.... +.. .+..+-++.+++++.++-.+++.+
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S-R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT-RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH-HHhCCceeccCCcCHHHHHHHHHH
Confidence 588999996542 12 222222211 123557888876432 111 344456788999999999999999
Q ss_pred HhCCCC-CCccHHHHHHHHHHHhCCChHHHHHHH
Q 000704 307 VVGNCV-EDPDLQTVAIQVANECGGLPIAILTVA 339 (1342)
Q Consensus 307 ~~~~~~-~~~~~~~~~~~i~~~c~glPlai~~i~ 339 (1342)
++.... ...--+++..-|++.++|.|-.+.-+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 884211 112236788999999999998776544
No 128
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.72 E-value=0.00022 Score=83.28 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=98.9
Q ss_pred CcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 137 GHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
....+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~--- 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG--- 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh---
Confidence 34567899988888887653 1 2345689999999999999999998764 22 333321
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c-ccccCCC---CC--CCC
Q 000704 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D-LERTGIP---FG--DVH 265 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~-~~~l~~~---l~--~~~ 265 (1342)
.++.... .+ .....+..+........+.+|++||+.... . ...+... +. ...
T Consensus 199 -~~l~~~~---~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQKF---IG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhHhh---cc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111110 11 112233344444444567899999986531 0 1111111 11 112
Q ss_pred CCcEEEEEecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCCh
Q 000704 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 266 ~gs~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1342)
.+.+||.||......+.++ .-...+.++..+.++-.++|+.++.... ...+ ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 3567777776544333211 1235789999999999999998874321 1223 345666666643
No 129
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.70 E-value=6.1e-06 Score=101.66 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=34.2
Q ss_pred hcccceeeeecccc-cceeccCCCCccccccccEEEEecCC-CCCCcH-HHHhhcCCccEEEEE-eece
Q 000704 1070 VGSHLEELKLSGKD-ITMIREGRLPTYLFQNLKILEVVNDK-SDNFPI-CFLQYFKNLEKLELR-WSSY 1134 (1342)
Q Consensus 1070 ~~~~L~~L~l~~~~-l~~~~~~~~~~~~l~~L~~L~l~~c~-~~~~~~-~~l~~l~~L~~L~l~-c~~l 1134 (1342)
.+++|+.|+++.|. +++.....+. ..+++|+.|.+.+|. ++.... ...+.+++|++|+|+ |..+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 35666677777663 4433221111 125566666666666 333322 334556677777777 6655
No 130
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.69 E-value=4e-05 Score=57.22 Aligned_cols=39 Identities=41% Similarity=0.585 Sum_probs=20.3
Q ss_pred CCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccC
Q 000704 581 NLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIP 620 (1342)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp 620 (1342)
+|++|++++|.|+.+|..+++|++|++|++++|+ ++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555555555555555555555555555555554 44443
No 131
>PRK05642 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00032 Score=75.64 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=90.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.|+|..|+|||.||+.+++....+ -..++|++.. ++... ...+.+.+. +-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~------~~~~~-----------------~~~~~~~~~-~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLA------ELLDR-----------------GPELLDNLE-QYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHH------HHHhh-----------------hHHHHHhhh-hCC
Confidence 578999999999999999999876522 2356677543 22211 012333333 222
Q ss_pred EEEEEcCCCCc---ccccc-cCCCCCC-CCCCcEEEEEecchhhhhh--------hcCcCccEEecCCCHHHHHHHHHHH
Q 000704 241 ILVILDDIWTS---LDLER-TGIPFGD-VHRGCKILVTSRRRDVLVS--------EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1342)
Q Consensus 241 ~LlvlDdv~~~---~~~~~-l~~~l~~-~~~gs~iliTtr~~~v~~~--------~~~~~~~~~l~~L~~~~~~~lf~~~ 307 (1342)
++|+||+... ..|+. +...+.. ...|.+||+|++...-.-. .+....++++++++.++-.++++++
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6788999643 34433 2222211 2246778998875432110 2233467899999999999999976
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 308 VGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
+.... -.--+++..-|++++.|-.-++..+
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 63211 1111567788888888776555433
No 132
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.68 E-value=6.3e-07 Score=103.44 Aligned_cols=131 Identities=26% Similarity=0.317 Sum_probs=101.8
Q ss_pred CCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcc-cCCCCcccEEeccCC
Q 000704 535 PKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPRE-IGELTQLKLLDLSNC 613 (1342)
Q Consensus 535 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~ 613 (1342)
..|.+-++++|.+..+-+++.-+++|+.|||++|++.....+..|.+|++|||++|.+..+|.- ...+. |+.|.+++|
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 3567778888888777778888889999999999998888889999999999999988888863 33443 899999887
Q ss_pred CCCCccCccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEeeccCCCCCC
Q 000704 614 SKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILP 679 (1342)
Q Consensus 614 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~~~~~ 679 (1342)
. ++.+-. +.+|.+|+.|+++.|-+. ....+..|..|..|+.|.+.+|.+..-|
T Consensus 243 ~-l~tL~g--ie~LksL~~LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 243 A-LTTLRG--IENLKSLYGLDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred H-HHhhhh--HHhhhhhhccchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 6 666654 889999999999888664 1233556666777888888888775544
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.67 E-value=0.00047 Score=72.92 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=115.2
Q ss_pred CCcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEE-EEecCCcCHHHHHHHHHHH
Q 000704 136 EGHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-AEVSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~i~~~ 214 (1342)
.....+.|.+..+.-|.+.+.....++...+|++|.|||+-|..++...--.+.|.+++- .++|..-.+. +.++=.+.
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Kik~ 111 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKIKN 111 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhhcC
Confidence 345567899999999998888777889999999999999999999887765566766542 3344332221 11110000
Q ss_pred hCCCCCCCChHHHHHHHHHHHh-----cCCc-EEEEEcCCCCc--ccccccCCCCCCCCCCcEEE-EEecchhhhhhhcC
Q 000704 215 LGLNFCEESDSERIMMLCNRLK-----REKK-ILVILDDIWTS--LDLERTGIPFGDVHRGCKIL-VTSRRRDVLVSEMH 285 (1342)
Q Consensus 215 l~~~~~~~~~~~~~~~l~~~l~-----~~k~-~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~il-iTtr~~~v~~~~~~ 285 (1342)
..++..... .-++ -.+|||++... +.|..+.....+....+|.| ||+--..+......
T Consensus 112 -------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 112 -------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred -------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 000000000 0133 47889999876 67888877766655566644 44443333221223
Q ss_pred cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000704 286 CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 286 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
....++.++|..++...-++..+..+...-+ .+..+.|++.++|--.
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHH
Confidence 3457899999999999999988842221111 3457789999988543
No 134
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.66 E-value=5.1e-06 Score=98.67 Aligned_cols=106 Identities=30% Similarity=0.348 Sum_probs=61.7
Q ss_pred cCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcccCCCCcccEEecc
Q 000704 532 AGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLS 611 (1342)
Q Consensus 532 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~ 611 (1342)
..++.|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..|..|+.|++++|.|..++ .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 44556666666666666554445566666666666666666666666666666666666665543 34446666666666
Q ss_pred CCCCCCccCc-cccCCCCCCCEEEccCCcc
Q 000704 612 NCSKLKVIPP-NVISSLSQLEELYLGNTSV 640 (1342)
Q Consensus 612 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~ 640 (1342)
+|. +..+.. . +..+.+|+.+++.+|.+
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCch
Confidence 655 444443 1 24555666666655544
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.65 E-value=0.00031 Score=80.49 Aligned_cols=147 Identities=13% Similarity=0.120 Sum_probs=85.5
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.++..+.+..++..... .++.++|++|+||||+|+.+++... .. ...++.+. .... ..++.+..+
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~~---~~~i~~~~-~~~~-~i~~~l~~~ 91 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--AE---VLFVNGSD-CRID-FVRNRLTRF 91 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--cc---ceEeccCc-ccHH-HHHHHHHHH
Confidence 455678999999999999876554 5677799999999999999988653 11 23344433 2221 222211111
Q ss_pred CCCCCCCChHHHHHHHHHHHh-cCCcEEEEEcCCCCc---ccccccCCCCCCCCCCcEEEEEecchhhhhh-hcCcCccE
Q 000704 216 GLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-EMHCQNNY 290 (1342)
Q Consensus 216 ~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~---~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~-~~~~~~~~ 290 (1342)
..... .+.+-++|+||+... ...+.+...+.....++++|+||........ .......+
T Consensus 92 ----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i 155 (316)
T PHA02544 92 ----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155 (316)
T ss_pred ----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEE
Confidence 01100 135568899999755 1222232223333457788888865432211 12233467
Q ss_pred EecCCCHHHHHHHHHH
Q 000704 291 CVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 291 ~l~~L~~~~~~~lf~~ 306 (1342)
.+...+.++..+++..
T Consensus 156 ~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 156 DFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 7777777777766554
No 136
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=1e-05 Score=96.22 Aligned_cols=102 Identities=28% Similarity=0.357 Sum_probs=55.4
Q ss_pred CCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCcc-ccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCC
Q 000704 535 PKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNC 613 (1342)
Q Consensus 535 ~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~-i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~ 613 (1342)
..+..+++..+.+...-..++.+++|.+|++.+|.|..+.. +..+.+|++|++++|.|..+. .+..+..|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 34444445555554433445555566666666666555544 555666666666666555552 4555555666666655
Q ss_pred CCCCccCccccCCCCCCCEEEccCCcc
Q 000704 614 SKLKVIPPNVISSLSQLEELYLGNTSV 640 (1342)
Q Consensus 614 ~~l~~lp~~~l~~L~~L~~L~l~~~~~ 640 (1342)
. +..+.. +..+++|+.+++++|.+
T Consensus 151 ~-i~~~~~--~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 151 L-ISDISG--LESLKSLKLLDLSYNRI 174 (414)
T ss_pred c-chhccC--CccchhhhcccCCcchh
Confidence 4 444443 44455556665555544
No 137
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.63 E-value=0.00044 Score=76.37 Aligned_cols=135 Identities=14% Similarity=0.174 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
...-+.++|++|+||||+|+.+++.......-....++.++. .++... .++ + ....+..+.+. .
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~----~~l~~~---~~g-----~-~~~~~~~~~~~---a 104 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER----ADLVGE---YIG-----H-TAQKTREVIKK---A 104 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----HHhhhh---hcc-----c-hHHHHHHHHHh---c
Confidence 345788999999999999999998754211111222333322 111111 011 1 11122222222 2
Q ss_pred CcEEEEEcCCCCcc----------cccccCCCCCCCCCCcEEEEEecchhhhh------hhcCc-CccEEecCCCHHHHH
Q 000704 239 KKILVILDDIWTSL----------DLERTGIPFGDVHRGCKILVTSRRRDVLV------SEMHC-QNNYCVSVLNKEEAW 301 (1342)
Q Consensus 239 k~~LlvlDdv~~~~----------~~~~l~~~l~~~~~gs~iliTtr~~~v~~------~~~~~-~~~~~l~~L~~~~~~ 301 (1342)
..-+|++|++.... ..+.+...+........+|+++....... ..... ...+++++++.+|-.
T Consensus 105 ~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 23588999996521 22333333333333345555554432211 00111 346889999999999
Q ss_pred HHHHHHhC
Q 000704 302 SLFSKVVG 309 (1342)
Q Consensus 302 ~lf~~~~~ 309 (1342)
+++.+.+.
T Consensus 185 ~Il~~~~~ 192 (261)
T TIGR02881 185 EIAERMVK 192 (261)
T ss_pred HHHHHHHH
Confidence 99988774
No 138
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.61 E-value=0.0078 Score=63.28 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=99.0
Q ss_pred CCCcccccchHHHHHHHHHHHc-----CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHH
Q 000704 135 NEGHEFIESRESILNDILDALR-----GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~-----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1342)
+.....|+|.++.++++-=.+. +...-.|-++|++|.||||||.-+++...+. +. ++-....
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k----~tsGp~l------- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK----ITSGPAL------- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE----ecccccc-------
Confidence 3456679999888888765554 3456689999999999999999999987643 11 1111100
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc-cc--------cccCCCC-CCCCCCcE----------
Q 000704 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-DL--------ERTGIPF-GDVHRGCK---------- 269 (1342)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~-~~--------~~l~~~l-~~~~~gs~---------- 269 (1342)
.....+..+...+ ...=.+.+|.+.... .. +++..-. -..++++|
T Consensus 89 -------------eK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 89 -------------EKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -------------cChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 1111222223333 233334455553331 01 1110000 01222333
Q ss_pred -EEEEecchhhhhhhcC--cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 270 -ILVTSRRRDVLVSEMH--CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 270 -iliTtr~~~v~~~~~~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
|=.|||.-.+..- .. -..+.+++..+.+|-.++..+.+..-. -+--++-+.+|+++..|-|.-+.-
T Consensus 154 LIGATTr~G~lt~P-LrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRIAnR 222 (332)
T COG2255 154 LIGATTRAGMLTNP-LRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRIANR 222 (332)
T ss_pred Eeeeccccccccch-hHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHHHHH
Confidence 4458887655442 21 134678999999999999998884111 111245688999999999964433
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0015 Score=80.12 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=110.7
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..+..|..++...+. ..+-++|+.|+||||+|+.+++..--...... . ......-+..+.+....
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAGN 88 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcCC
Confidence 345678999999999998876543 57789999999999999999987642111100 0 00111112222222211
Q ss_pred CCCC-----CCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-Eecchhhhhhh
Q 000704 216 GLNF-----CEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSE 283 (1342)
Q Consensus 216 ~~~~-----~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~~ 283 (1342)
..+. ......+.+.++..... .+++-++|+|++... ..++.+...+........+|+ |+....+....
T Consensus 89 h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTI 168 (620)
T PRK14948 89 ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTI 168 (620)
T ss_pred CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHH
Confidence 1110 00111223333333222 246678999999765 345555544443334455554 44434343322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
......+++..++.++....+.+.+...... --.+.+..|++.++|-+..+...
T Consensus 169 rSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 169 ISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3345678888999998888887776421111 11345788999999987655443
No 140
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0014 Score=79.59 Aligned_cols=193 Identities=10% Similarity=0.091 Sum_probs=108.9
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..++.+..++...+.+ .+-++|+.|+||||+|+.+++..--...... ..+....+- +.|...-
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~~~~ 86 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSIDNDN 86 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHHcCC
Confidence 4556889999999999998865544 6889999999999999999987642111000 000000000 0110000
Q ss_pred CCC---CCC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEec-chhhhhhh
Q 000704 216 GLN---FCE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSR-RRDVLVSE 283 (1342)
Q Consensus 216 ~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr-~~~v~~~~ 283 (1342)
..+ .++ ....+.+..+.+.+. .+++-++|+|++... ..++.+...+......+.+|++|. ...+....
T Consensus 87 ~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI 166 (563)
T PRK06647 87 SLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166 (563)
T ss_pred CCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHH
Confidence 000 000 011122222222211 256778999998665 345666555554445666665553 34443322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
......+++.+++.++....+.+.+..... .--.+.+..|++.++|-+..+..
T Consensus 167 ~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHhceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 333457899999999998888877622111 11245677889999998754443
No 141
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.59 E-value=0.00059 Score=73.84 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=92.1
Q ss_pred HHHHHHHHHc-CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChH
Q 000704 147 ILNDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDS 225 (1342)
Q Consensus 147 ~~~~l~~~l~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 225 (1342)
.+..+.++.. ....+.+.|+|..|+|||+||+.+++..... .. ..++++..+.. .. +
T Consensus 28 ~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~~-~~~~i~~~~~~------~~----~---------- 85 (227)
T PRK08903 28 LVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-GR-NARYLDAASPL------LA----F---------- 85 (227)
T ss_pred HHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CC-cEEEEehHHhH------HH----H----------
Confidence 3444444443 2344678999999999999999999876422 22 33444432210 00 0
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCCCCcccc--cccCCCCCC-CCCCc-EEEEEecchhhhhh-------hcCcCccEEecC
Q 000704 226 ERIMMLCNRLKREKKILVILDDIWTSLDL--ERTGIPFGD-VHRGC-KILVTSRRRDVLVS-------EMHCQNNYCVSV 294 (1342)
Q Consensus 226 ~~~~~l~~~l~~~k~~LlvlDdv~~~~~~--~~l~~~l~~-~~~gs-~iliTtr~~~v~~~-------~~~~~~~~~l~~ 294 (1342)
... .+.-+||+||+.....+ +.+...+.. ...|. .||+|++....... .+.....+++.+
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~p 156 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKP 156 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecC
Confidence 111 23447889999654322 122222221 12343 46666664332210 122246889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHh
Q 000704 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTL 342 (1342)
Q Consensus 295 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l 342 (1342)
+++++-..++.+.+.... ..--++..+.+++...|.+..+..+-..+
T Consensus 157 l~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 157 LSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 999887777776542111 11124567788888999988877665554
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=97.58 E-value=0.0013 Score=73.02 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=73.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .+. .. .....+.+. ...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~-----~~-~~~~~~l~~---a~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGH-----TA-PKTKEVLKK---AMG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hcc-----ch-HHHHHHHHH---ccC
Confidence 3588999999999999999988754222111222555542 2222211 111 01 112222222 233
Q ss_pred EEEEEcCCCCc-----------ccccccCCCCCCCCCCcEEEEEecchhhhhh-------hcCcCccEEecCCCHHHHHH
Q 000704 241 ILVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWS 302 (1342)
Q Consensus 241 ~LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~ 302 (1342)
-+|++|++... +..+.+...+.+...+.+||+++........ .......+.+++++.+|..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 58999998642 1122232333334455677777764433210 11124578999999999999
Q ss_pred HHHHHh
Q 000704 303 LFSKVV 308 (1342)
Q Consensus 303 lf~~~~ 308 (1342)
++.+.+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 988877
No 143
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.0023 Score=74.69 Aligned_cols=136 Identities=20% Similarity=0.178 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC
Q 000704 143 SRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE 222 (1342)
Q Consensus 143 gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~ 222 (1342)
.|.....++++.+..... ++.|+|+-++||||+++.+....... .+++...+......-+.+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~---------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL---------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH----------
Confidence 344455666666543333 99999999999999997666554321 55554433221111111111
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhhh-----hcCcCccEEecCCCH
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVS-----EMHCQNNYCVSVLNK 297 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~-----~~~~~~~~~l~~L~~ 297 (1342)
.. ...+...++..++||.|....+|+.....+.+.++. +|++|+-+...... ..|....+++-||+.
T Consensus 85 ------~~-~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 85 ------RA-YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred ------HH-HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 11 111111277899999999999999888888776666 89999887665443 345567899999999
Q ss_pred HHHHH
Q 000704 298 EEAWS 302 (1342)
Q Consensus 298 ~~~~~ 302 (1342)
.|...
T Consensus 157 ~Efl~ 161 (398)
T COG1373 157 REFLK 161 (398)
T ss_pred HHHHh
Confidence 99865
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.58 E-value=0.00092 Score=79.06 Aligned_cols=162 Identities=19% Similarity=0.229 Sum_probs=91.2
Q ss_pred CCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCC---CcceEEEEEec
Q 000704 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGR---IFDEVVFAEVS 199 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~---~F~~~~wv~vs 199 (1342)
.....+.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.....- .+....|+.+.
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 345567788888888877653 1 1345689999999999999999999875221 12234455544
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH----hcCCcEEEEEcCCCCcc---------c-----ccccCCCC
Q 000704 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL----KREKKILVILDDIWTSL---------D-----LERTGIPF 261 (1342)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~k~~LlvlDdv~~~~---------~-----~~~l~~~l 261 (1342)
.. +++. .. ..+ ....+..+++.. ..+++++|++|+++... + ...+...+
T Consensus 259 ~~----eLl~----ky----vGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 259 GP----ELLN----KY----VGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred ch----hhcc----cc----cch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 31 1111 00 000 111222222222 23578999999997531 1 11222222
Q ss_pred CC--CCCCcEEEEEecchhhhhhhc---Cc-CccEEecCCCHHHHHHHHHHHhCC
Q 000704 262 GD--VHRGCKILVTSRRRDVLVSEM---HC-QNNYCVSVLNKEEAWSLFSKVVGN 310 (1342)
Q Consensus 262 ~~--~~~gs~iliTtr~~~v~~~~~---~~-~~~~~l~~L~~~~~~~lf~~~~~~ 310 (1342)
.. ...+..||.||-.....+.++ +. ...++++..+.++..++|+++...
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 21 113444555665444333222 12 346899999999999999998753
No 145
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.58 E-value=0.0012 Score=78.36 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=92.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.|+|..|+|||+||+.+++.......=..+++++ ..++..++...+... ....+.+.+. +.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 4689999999999999999999876331112445554 334455555544321 1223334443 23
Q ss_pred EEEEEcCCCCccc---c-cccCCCCCC-CCCCcEEEEEecchhh-hh----h---hcCcCccEEecCCCHHHHHHHHHHH
Q 000704 241 ILVILDDIWTSLD---L-ERTGIPFGD-VHRGCKILVTSRRRDV-LV----S---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1342)
Q Consensus 241 ~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iliTtr~~~v-~~----~---~~~~~~~~~l~~L~~~~~~~lf~~~ 307 (1342)
-+||+||+..... + +.+...+.. ...|..||+||....- .. . .+.....+.+++.+.++-..++.++
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4889999975421 1 112111111 1235568888764221 11 0 2333457899999999999999998
Q ss_pred hCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 308 VGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
+..... .--+++...|++.+.|.+-.
T Consensus 281 ~~~~~~-~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 281 AEEEGL-ELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHcCC-CCCHHHHHHHHHhcCCCHHH
Confidence 843211 11256778888888887654
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.57 E-value=0.00067 Score=86.24 Aligned_cols=156 Identities=15% Similarity=0.203 Sum_probs=91.7
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC---c-ceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
...++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+|. + +...+..
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a---- 251 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA---- 251 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh----
Confidence 4468899999999999887655556789999999999999999998743211 1 344443 1 1111110
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc----------cc-cccCCCCCCCCCCc-EEEEEecchhh--
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------DL-ERTGIPFGDVHRGC-KILVTSRRRDV-- 279 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~----------~~-~~l~~~l~~~~~gs-~iliTtr~~~v-- 279 (1342)
.......-...+..+.+.+.+.++.+|++|++.... +. +-+...+ .+|- ++|-+|...+.
T Consensus 252 ---~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 252 ---GTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKN 325 (731)
T ss_pred ---hccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHH
Confidence 000001122345555666554568999999986331 11 1122222 2332 44444443211
Q ss_pred --h--hhhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 280 --L--VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 280 --~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
. .........+.+++++.++..++++...
T Consensus 326 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 1012234578999999999999998755
No 147
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=3.6e-05 Score=80.07 Aligned_cols=193 Identities=19% Similarity=0.170 Sum_probs=109.9
Q ss_pred cccccEEEEecCCCCCCcH--HHHhhcCCccEEEEEeeceeeeccchhhhhhhccccccceeeeCCCCCcchhhccCCcc
Q 000704 1097 FQNLKILEVVNDKSDNFPI--CFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKL 1174 (1342)
Q Consensus 1097 l~~L~~L~l~~c~~~~~~~--~~l~~l~~L~~L~l~c~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 1174 (1342)
.+.+++|++..|.+..... ..+.++|.|+.|+|+||.+.+...... .-..+|+.|.+.+-. |. |......
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-----~p~~nl~~lVLNgT~-L~--w~~~~s~ 141 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-----LPLKNLRVLVLNGTG-LS--WTQSTSS 141 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-----ccccceEEEEEcCCC-CC--hhhhhhh
Confidence 4445555555555444433 466778888888888887765433110 124567777776521 11 1111223
Q ss_pred chhhcccceeeeecccCcccc---CCC-CcccCcccEEEEecCCCCccccchhhhhccccccEEEEcccccchhhhcCCC
Q 000704 1175 DSVVENLEMLEVWWCDNLVNL---VPS-SPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEG 1250 (1342)
Q Consensus 1175 ~~~l~~L~~L~i~~C~~l~~l---~~~-~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~ 1250 (1342)
+..+|.+++|+++... +..+ -+. ..--|.+++|+...|+-......-...+..+++..+-+..|| +++...+.+
T Consensus 142 l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~ 219 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKG 219 (418)
T ss_pred hhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhccc
Confidence 4456666777665531 1111 000 112356777888888755444334445566788888888887 565544333
Q ss_pred cccccccccccccccccccccccceeecCcceecCCCcceEEeecCCCccccCCC
Q 000704 1251 DVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTR 1305 (1342)
Q Consensus 1251 ~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~sL~~L~i~~Cp~l~~~~~~ 1305 (1342)
. -.+|++-.|++.. .+|-+...-.-...+|+|..|.+.+-|-...+.-+
T Consensus 220 s-----e~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~ 268 (418)
T KOG2982|consen 220 S-----EPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG 268 (418)
T ss_pred C-----CCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCC
Confidence 2 1577777777765 45555443222336799999999998877666543
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.00092 Score=81.92 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=106.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+..+..|.+++...+++ .+-++|+.|+||||+|+.+++..--....+. ...+.-..-++|...-
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEGR 86 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcCC
Confidence 3556889999999999998866654 5689999999999999999887532111100 0000000111110000
Q ss_pred CCC---CCC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-Eecchhhhhhh
Q 000704 216 GLN---FCE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSE 283 (1342)
Q Consensus 216 ~~~---~~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~~ 283 (1342)
..+ .+. ....+.+..+...+. .+++-++|+|++... ...+.+...+-.....+.+|+ ||....+....
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 000 000 011122233333221 246668999998765 334444444433334555554 55555554422
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh-HHHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP-IAILTV 338 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP-lai~~i 338 (1342)
......+.+.+++.++....+...+...... --.+....|++.++|-. .|+..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~-i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS-ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3345678899999999888887766321111 11345677888888865 344443
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.0022 Score=72.09 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=113.1
Q ss_pred cccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCC-------------CcceEEEEEecCCcC
Q 000704 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGR-------------IFDEVVFAEVSQTPD 203 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~ 203 (1342)
...++|.+..++.+...+..+++ ...-++|+.|+||+++|..+.+..--.. ...-..|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 34678999999999999887665 7899999999999999999987753211 122234442110000
Q ss_pred HHHHHHHHHHHhCC--CCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEec
Q 000704 204 LKRIRREIADQLGL--NFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSR 275 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr 275 (1342)
-+.+-.+-++..+. .....-..+.+.++.+.+. .+++-++|+|++.... ..+.+...+-...++.=|++|++
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00000111111110 0001112234445555543 2577899999987663 34444433322223333444555
Q ss_pred chhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 276 RRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 276 ~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
...+..........+++.++++++..+.+.+....... ......++..++|.|..+..
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHH
Confidence 55554433444678999999999999999886432111 11135788999999976544
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.6e-05 Score=94.06 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=44.9
Q ss_pred CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCC---CccccCCCCCCE
Q 000704 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGD---IAIIGNLKNLEI 584 (1342)
Q Consensus 508 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~---l~~i~~L~~L~~ 584 (1342)
.+|.|++|.+.+-.....--...+.++++|+.||+++++++.+ ..|++|+||++|.+++=.+.. +..+.+|++|++
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4566666666653332221223345566666666666666655 556666666666665544432 245555666666
Q ss_pred EEccCC
Q 000704 585 LSLCCS 590 (1342)
Q Consensus 585 L~Ls~~ 590 (1342)
||+|..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 666554
No 151
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.51 E-value=0.0017 Score=72.24 Aligned_cols=131 Identities=10% Similarity=0.089 Sum_probs=73.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcE
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI 241 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 241 (1342)
-+.++|++|+||||+|+.++............-|+.++. .++. ..+... +. .....+.+. -..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~----~~~~g~----~~-~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLV----GQYIGH----TA-PKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHh----Hhhccc----ch-HHHHHHHHH---ccCc
Confidence 588999999999999998887765322222223555442 1222 211111 11 122222322 2346
Q ss_pred EEEEcCCCCc-----------ccccccCCCCCCCCCCcEEEEEecchhhhhh-------hcCcCccEEecCCCHHHHHHH
Q 000704 242 LVILDDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS-------EMHCQNNYCVSVLNKEEAWSL 303 (1342)
Q Consensus 242 LlvlDdv~~~-----------~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~l 303 (1342)
+|++|++... +.++.+...+.....+.+||++|........ .......+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899998632 1123333333344456677777654322110 011135689999999999999
Q ss_pred HHHHh
Q 000704 304 FSKVV 308 (1342)
Q Consensus 304 f~~~~ 308 (1342)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 98877
No 152
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.50 E-value=0.0011 Score=84.83 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=91.7
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEEE-EEecCCcCHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVF-AEVSQTPDLKRIRREI 211 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~i 211 (1342)
....++||++++.++++.|......-+.++|.+|+||||+|+.+++....... .+..+| +.++.-.
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~--------- 255 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ--------- 255 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh---------
Confidence 34568999999999999988666566779999999999999999998753221 223333 2222100
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhc-CCcEEEEEcCCCCcc-------ccc--ccCCCCCCCCCC-cEEEEEecchhhh
Q 000704 212 ADQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL-------DLE--RTGIPFGDVHRG-CKILVTSRRRDVL 280 (1342)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~-------~~~--~l~~~l~~~~~g-s~iliTtr~~~v~ 280 (1342)
........-...+..+...+.+ +++.+|++|++.... .-+ .+..+. -.+| -++|-||...+..
T Consensus 256 ----ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 256 ----AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYK 329 (852)
T ss_pred ----cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHh
Confidence 0000000112333444444432 478999999985541 111 122222 2234 4555555543221
Q ss_pred h------hhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 281 V------SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 281 ~------~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
. ........+.+++++.++..++++...
T Consensus 330 ~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 330 KYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred hhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 1 012234589999999999999976554
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.49 E-value=0.001 Score=85.71 Aligned_cols=158 Identities=14% Similarity=0.164 Sum_probs=92.2
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC---c-ceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI---F-DEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
...++||+++++++++.|......-+.++|++|+|||++|+.++........ . +..+|. + +...++
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh-----
Confidence 3458899999999999998655556679999999999999999988652211 1 244553 1 111111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc---------cccccCCCCCCCCCCcEEEEEecchhhhh---
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLERTGIPFGDVHRGCKILVTSRRRDVLV--- 281 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~l~~~l~~~~~gs~iliTtr~~~v~~--- 281 (1342)
........-...+..+.+.+.+.++.+|++|++.... +...+..+.-..+ .-++|.+|...+...
T Consensus 248 --ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 248 --AGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --ccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHh
Confidence 1111111223455556666655678999999985331 1111211111111 234555555443211
Q ss_pred ---hhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 282 ---SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 282 ---~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
........+.+...+.++...+++...
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHH
Confidence 012234568888899999888877543
No 154
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.48 E-value=1.2e-05 Score=85.90 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=19.1
Q ss_pred cCCCCCCEEEccCCCCc-----ccCcccCCCCcccEEeccCCC
Q 000704 577 GNLKNLEILSLCCSDIE-----QLPREIGELTQLKLLDLSNCS 614 (1342)
Q Consensus 577 ~~L~~L~~L~Ls~~~i~-----~LP~~i~~L~~L~~L~L~~~~ 614 (1342)
-..++|++||||.|-+. .+-.-+..++.|++|+|.+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 34445555666555433 111224455666666666654
No 155
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.003 Score=77.09 Aligned_cols=192 Identities=13% Similarity=0.088 Sum_probs=106.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
....++|.+...+.+.+++...++ ..+-++|+.|+||||+|+.+.+..-....-+ ....+.-..-+.|....
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAITNGS 86 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHhcCC
Confidence 355688999999999999875543 4577899999999999999987653211000 00011111111111110
Q ss_pred CCCC---CC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEE-Eecchhhhhhh
Q 000704 216 GLNF---CE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILV-TSRRRDVLVSE 283 (1342)
Q Consensus 216 ~~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~ili-Ttr~~~v~~~~ 283 (1342)
..+. +. ....+.+..+..... .+++-++|+|++... ..+..+...+........+|+ ||....+....
T Consensus 87 ~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI 166 (559)
T PRK05563 87 LMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166 (559)
T ss_pred CCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHH
Confidence 0000 00 011222333333322 256778899999765 345555444433333444444 55544444322
Q ss_pred cCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 284 MHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 284 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
......+.+.+++.++....+...+......- -.+....|++.++|-+..+.
T Consensus 167 ~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i-~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEY-EDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HhHheEEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 33455788999999998888888773211111 13556788888888775443
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.42 E-value=0.002 Score=77.27 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=93.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
.-+.|+|..|+|||+||+.+++.......--.+++++. .++..++...+... ....+.+.+. +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS------EKFTNDFVNALRNN--------TMEEFKEKYR--SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHHHHHHHHh--cC
Confidence 56899999999999999999998763221223455543 33444444444211 1223344443 34
Q ss_pred EEEEEcCCCCccc---c-cccCCCCCC-CCCCcEEEEEecchh--h-------hhhhcCcCccEEecCCCHHHHHHHHHH
Q 000704 241 ILVILDDIWTSLD---L-ERTGIPFGD-VHRGCKILVTSRRRD--V-------LVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 241 ~LlvlDdv~~~~~---~-~~l~~~l~~-~~~gs~iliTtr~~~--v-------~~~~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
-+||+||+..... + +.+...+.. ...|..||+||.... + .. .+.....+++++.+.++-..++++
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S-Rl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS-RFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh-HhcCCeeEEecCCCHHHHHHHHHH
Confidence 5899999965311 1 122111111 113456888876532 1 11 244456799999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 307 VVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
++.... ..--+++...|++.+.|-.-.+
T Consensus 292 ~~~~~~-~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 292 KAEEEG-IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHcC-CCCCHHHHHHHHcCcCCCHHHH
Confidence 884211 1112567888888888876643
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.41 E-value=0.0017 Score=75.25 Aligned_cols=175 Identities=16% Similarity=0.208 Sum_probs=98.3
Q ss_pred cCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 134 YNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 134 ~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
|.....++.|.+..++++.+.+. . ...+-|.++|++|.|||++|+.+++... ..| +.+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f-----i~i~~ 212 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF-----IRVVG 212 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh
Confidence 33445567788777777766543 1 2356788999999999999999998754 223 22211
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----ccccCCCCC--
Q 000704 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG-- 262 (1342)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~----~~~l~~~l~-- 262 (1342)
.++... .++ .....+..++.......+.+|++|++.... . +..+...+.
T Consensus 213 ----s~l~~k---~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 ----SEFVQK---YLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHHHH---hcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 111111 111 012234444555545688999999976421 0 111111111
Q ss_pred CCCCCcEEEEEecchhhhhhh-c---CcCccEEecCCCHHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCCh
Q 000704 263 DVHRGCKILVTSRRRDVLVSE-M---HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 263 ~~~~gs~iliTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1342)
....+.+||+||...+..+.+ . .-...+.+...+.++...+|+.+..... ...++ .++++...|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 122456788888765543321 1 1245688988999998888887764221 22233 35566666553
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.39 E-value=8.7e-05 Score=91.69 Aligned_cols=131 Identities=23% Similarity=0.283 Sum_probs=96.7
Q ss_pred CccEEEccCCCC-CCCCChhhhcCCCCccEEEecCCCCC--cCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEc
Q 000704 511 HLTSLCMNPKDP-FLHIPDNFFAGMPKLRVLVLTRMKLL--TLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSL 587 (1342)
Q Consensus 511 ~Lr~L~l~~~~~-~~~~~~~~f~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~L 587 (1342)
+|+.|++.|... ....|..+...++.||.|.+.+-.+. ++-.-..++++|+.||+++++++.+..|++|+|||+|.+
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSM 202 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhc
Confidence 455555555432 23455666677999999999997664 334445689999999999999999999999999999999
Q ss_pred cCCCCcccC--cccCCCCcccEEeccCCCCCCcc--Cc---cccCCCCCCCEEEccCCccc
Q 000704 588 CCSDIEQLP--REIGELTQLKLLDLSNCSKLKVI--PP---NVISSLSQLEELYLGNTSVE 641 (1342)
Q Consensus 588 s~~~i~~LP--~~i~~L~~L~~L~L~~~~~l~~l--p~---~~l~~L~~L~~L~l~~~~~~ 641 (1342)
.+=.+..-+ ..+-+|++|++||+|.......- .. +.-..|++|+.|+.+++.+.
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 876665322 35788999999999986533221 11 01235899999999988765
No 159
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.36 E-value=0.0036 Score=75.11 Aligned_cols=155 Identities=15% Similarity=0.088 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.|+|..|.|||.|++.+++.......--.+++++ ..++..++...+... ..+.+.+++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 4589999999999999999999875321122345554 344555554443211 1222333332 33
Q ss_pred EEEEEcCCCCcc---cccc-cCCCCCC-CCCCcEEEEEecchh---------hhhhhcCcCccEEecCCCHHHHHHHHHH
Q 000704 241 ILVILDDIWTSL---DLER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 241 ~LlvlDdv~~~~---~~~~-l~~~l~~-~~~gs~iliTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
=+|||||+.... .|+. +...+.. ...|..|||||+... +.. .+...-++++.+.+.+.-..++.+
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~S-Rf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRN-RFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHh-hhhcCceEEcCCCCHHHHHHHHHH
Confidence 578899996552 2221 1111111 123556888887631 222 355567899999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChH
Q 000704 307 VVGNCVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
++.... -.--+++.+-|++++.+..-
T Consensus 458 ka~~r~-l~l~~eVi~yLa~r~~rnvR 483 (617)
T PRK14086 458 KAVQEQ-LNAPPEVLEFIASRISRNIR 483 (617)
T ss_pred HHHhcC-CCCCHHHHHHHHHhccCCHH
Confidence 884221 11125667777777765543
No 160
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.35 E-value=0.0032 Score=71.11 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCC-------------------cceEEEEEec---CCcCHHHHHHHHHHHhCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRI-------------------FDEVVFAEVS---QTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs---~~~~~~~~~~~i~~~l~~ 217 (1342)
...+-++|+.|+||||+|+.+++..--... ..-..|+.-. +...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~-------------- 87 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK-------------- 87 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC--------------
Confidence 346889999999999999999987642111 1112222111 1112
Q ss_pred CCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecch-hhhhhhcCcCccE
Q 000704 218 NFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNY 290 (1342)
Q Consensus 218 ~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~~~~~~~ 290 (1342)
.+.+.++.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|+||.+. .+..........+
T Consensus 88 -------id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 88 -------VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred -------HHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 223333333332 245556678999876 34444444443334566777777664 4443233345679
Q ss_pred EecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 291 CVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 291 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
.+.+++.+++.+.+.+..+.. ..+.+..++..++|.|..+..+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999887754211 1233567789999999765443
No 161
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.35 E-value=0.0012 Score=72.05 Aligned_cols=162 Identities=17% Similarity=0.171 Sum_probs=103.1
Q ss_pred ccccchHHHHHHHHHHHcCCC---eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHh
Q 000704 139 EFIESRESILNDILDALRGPY---VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQL 215 (1342)
Q Consensus 139 ~~~~gr~~~~~~l~~~l~~~~---~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 215 (1342)
..|.+|+..+..+..++-+.. ...|-|+|-+|.|||.+.+++.+... -..+|+++-+.++.+.++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHHHHHh
Confidence 347799999999999887433 34568999999999999999998773 2358999999999999999999998
Q ss_pred C-CCCCCCCh---HHHHHHHHHHHh-------cCCcEEEEEcCCCCcccccccCCC----CC--CCCCCcEEEEEecchh
Q 000704 216 G-LNFCEESD---SERIMMLCNRLK-------REKKILVILDDIWTSLDLERTGIP----FG--DVHRGCKILVTSRRRD 278 (1342)
Q Consensus 216 ~-~~~~~~~~---~~~~~~l~~~l~-------~~k~~LlvlDdv~~~~~~~~l~~~----l~--~~~~gs~iliTtr~~~ 278 (1342)
+ .+.++... .+........+. .++.++||||+++...+.+.+..+ +. -..+.. +|+++-...
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~ 159 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSC 159 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecccc
Confidence 5 22222111 122222222221 146899999999776543332111 00 012223 333333222
Q ss_pred hhhh--hcCcCc--cEEecCCCHHHHHHHHHH
Q 000704 279 VLVS--EMHCQN--NYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 279 v~~~--~~~~~~--~~~l~~L~~~~~~~lf~~ 306 (1342)
-... .+|... ++.....+.+|...++.+
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 1111 245443 567778899999988866
No 162
>PRK06620 hypothetical protein; Validated
Probab=97.32 E-value=0.00088 Score=70.87 Aligned_cols=134 Identities=16% Similarity=0.018 Sum_probs=78.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . . ... ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~--------------------~----~---~~~--~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF--------------------N----E---EIL--EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh--------------------c----h---hHH--hcC
Confidence 5699999999999999998776542 1 1211 0000 0 0 011 133
Q ss_pred EEEEEcCCCCccc--ccccCCCCCCCCCCcEEEEEecchhhh---h---hhcCcCccEEecCCCHHHHHHHHHHHhCCCC
Q 000704 241 ILVILDDIWTSLD--LERTGIPFGDVHRGCKILVTSRRRDVL---V---SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCV 312 (1342)
Q Consensus 241 ~LlvlDdv~~~~~--~~~l~~~l~~~~~gs~iliTtr~~~v~---~---~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 312 (1342)
-++++||+....+ +-.+...+ ...|..||+|++..... . +.+...-++++++++.++-..++++.+....
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~--~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNII--NEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHH--HhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 5788899963321 11111111 13567899998854331 1 0344455899999999998888888774211
Q ss_pred CCccHHHHHHHHHHHhCCChHHH
Q 000704 313 EDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 313 ~~~~~~~~~~~i~~~c~glPlai 335 (1342)
-.--+++.+-|++.+.|---++
T Consensus 165 -l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 165 -VTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred -CCCCHHHHHHHHHHccCCHHHH
Confidence 1112566778888877655433
No 163
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.31 E-value=0.0024 Score=75.73 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=92.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc-eEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD-EVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1342)
.-+.|+|..|+|||+||+.+++..... +.+ .++|++. .++..++...+... ......+.+. .+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 459999999999999999999987632 222 4566643 45666666555321 1122333332 34
Q ss_pred cEEEEEcCCCCcc---cc-cccCCCCCC-CCCCcEEEEEecc-hhhh----hh---hcCcCccEEecCCCHHHHHHHHHH
Q 000704 240 KILVILDDIWTSL---DL-ERTGIPFGD-VHRGCKILVTSRR-RDVL----VS---EMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 240 ~~LlvlDdv~~~~---~~-~~l~~~l~~-~~~gs~iliTtr~-~~v~----~~---~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
.-+|++||+.... .+ +.+...+.. ...|..||+||.. ..-. .. .+...-.+.+++.+.+.-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5589999997431 11 112111111 1234568888852 2211 11 233345789999999999999999
Q ss_pred HhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 307 VVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 307 ~~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
.+..... .--+++...|++.+.|..-.
T Consensus 275 ~~~~~~~-~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 275 MLEIEHG-ELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred HHHhcCC-CCCHHHHHHHHhccccCHHH
Confidence 8842111 11256678888888775443
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.31 E-value=0.0021 Score=74.94 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=89.4
Q ss_pred CCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc
Q 000704 136 EGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1342)
....++.|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc-
Confidence 344566788888887777653 1 1345678999999999999999999764 233 222211
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------ccccCCCCC--CC
Q 000704 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD----------------LERTGIPFG--DV 264 (1342)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------------~~~l~~~l~--~~ 264 (1342)
++.. ... . .....+..++.....+.+.+|++|++..... ...+...+. ..
T Consensus 252 ---eL~~----k~~----G-e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 ---ELIQ----KYL----G-DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred ---hhhh----hhc----c-hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 1111 110 0 0112233444444446788999999753210 001111111 11
Q ss_pred CCCcEEEEEecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhC
Q 000704 265 HRGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1342)
Q Consensus 265 ~~gs~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 309 (1342)
..+.+||+||...+..+..+ .-...+.+...+.++..++|..++.
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 23567888887655444322 1245789999999999999998874
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.00091 Score=70.82 Aligned_cols=56 Identities=25% Similarity=0.215 Sum_probs=41.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEE
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV 194 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~ 194 (1342)
+..++.+|......++.++.+. .+|.++|.+|.|||+||.++..+.-....|+.++
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIi 108 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRII 108 (262)
T ss_pred CCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEE
Confidence 3445677888888888888654 4999999999999999999988643224455444
No 166
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.27 E-value=0.011 Score=62.00 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=69.9
Q ss_pred CCCcccccchHHHHHHHHHH----HcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 135 NEGHEFIESRESILNDILDA----LRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
......++|-+..++.+++- +......-+-+||..|.|||++++++.+...... . --|.|++.
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---L-RlIev~k~--------- 89 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---L-RLIEVSKE--------- 89 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---c-eEEEECHH---------
Confidence 34455677877777777654 3344556788899999999999999999876432 1 12333321
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHh-cCCcEEEEEcCCCCc---ccccccCCCCCC---CCC-CcEEEEEecchhhhh
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFGD---VHR-GCKILVTSRRRDVLV 281 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~---~~~~~l~~~l~~---~~~-gs~iliTtr~~~v~~ 281 (1342)
....+..+...+. ...||+|.+||+.-. .....++..+.. ..+ ...|-.||-.++...
T Consensus 90 -------------~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred -------------HhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 1112223333333 358999999998533 234444444432 112 233444555555443
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.24 E-value=0.0036 Score=77.00 Aligned_cols=169 Identities=20% Similarity=0.272 Sum_probs=94.4
Q ss_pred cccchHH---HHHHHHHHHcCC---------CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHH
Q 000704 140 FIESRES---ILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1342)
Q Consensus 140 ~~~gr~~---~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (1342)
++.|.++ ++.++++++... ..+-|.++|++|+|||++|+.+++...+ -|+.++.. ++
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~s----~f 252 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISGS----EF 252 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccHH----HH
Confidence 3455544 455555555432 1346899999999999999999886542 13333321 11
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc------------c----ccccCCCCC--CCCCCcE
Q 000704 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------D----LERTGIPFG--DVHRGCK 269 (1342)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~----~~~l~~~l~--~~~~gs~ 269 (1342)
.... .+ .....+..+........+++|++||+.... . +..+...+. ....|-.
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 00 012234445555555788999999995431 1 122221111 1234556
Q ss_pred EEEEecchhhhhhhc---C-cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCC
Q 000704 270 ILVTSRRRDVLVSEM---H-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGG 330 (1342)
Q Consensus 270 iliTtr~~~v~~~~~---~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 330 (1342)
||.||...+..+.++ + -...+.+...+.++-.++++.++......+ ......+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 777776644333211 1 235788999999999999998875422111 2234667777777
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.00099 Score=66.18 Aligned_cols=90 Identities=23% Similarity=0.202 Sum_probs=51.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.|+|++|+||||+|+.++....... ..++++..+........... ...........................+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999998776322 23555555443322222211 11111111112223334444444443344
Q ss_pred EEEEEcCCCCccc
Q 000704 241 ILVILDDIWTSLD 253 (1342)
Q Consensus 241 ~LlvlDdv~~~~~ 253 (1342)
.+|++|++.....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987743
No 169
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.20 E-value=0.0013 Score=80.12 Aligned_cols=50 Identities=16% Similarity=0.237 Sum_probs=40.6
Q ss_pred CCcccccchHHHHHHHHHHHcC-----CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 136 EGHEFIESRESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
....+++|.++.++++..|+.. ...+++.|+|++|+||||+++.++....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456688888888999888873 2345799999999999999999998654
No 170
>PRK08118 topology modulation protein; Reviewed
Probab=97.18 E-value=0.00021 Score=72.46 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcC-CCcceEEE
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 195 (1342)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987644 56777775
No 171
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.16 E-value=0.0052 Score=79.49 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=90.2
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
...++||+.++.++++.|......-+.++|.+|+|||++|+.++.+...... ....+|.. ++..+..
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~a---- 242 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALIA---- 242 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHhh----
Confidence 4458899999999999987655566679999999999999999987643211 12333321 1111110
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhc-CCcEEEEEcCCCCcc---------cccccCCCCCCCCCC-cEEEEEecchhhh--
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDVL-- 280 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~---------~~~~l~~~l~~~~~g-s~iliTtr~~~v~-- 280 (1342)
+.. ........+..+...+.+ +++.+|++|++.... +...+..+.. ..| -++|-+|.....-
T Consensus 243 --~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l--~~g~i~~IgaTt~~e~r~~ 317 (852)
T TIGR03346 243 --GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL--ARGELHCIGATTLDEYRKY 317 (852)
T ss_pred --cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh--hcCceEEEEeCcHHHHHHH
Confidence 000 001122344455555533 468999999986442 1112222222 233 3444444433321
Q ss_pred ----hhhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 281 ----VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 281 ----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
.........+.+...+.++...++....
T Consensus 318 ~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 318 IEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1012234568899999999999987765
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.12 E-value=0.0038 Score=80.32 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=88.3
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEE-EEEecCCcCHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVV-FAEVSQTPDLKRIRREIA 212 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~-wv~vs~~~~~~~~~~~i~ 212 (1342)
...++||+.++.++++.|......-+.++|.+|+||||+|+.+......... .+..+ ++.++. ++.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a--- 247 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA--- 247 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh---
Confidence 4558999999999999988666666779999999999999999988642211 12222 222221 100
Q ss_pred HHhCCCCCCCChHHHHHHHHHHHhc-CCcEEEEEcCCCCcc---------cccccCCCCCCCCCC-cEEEEEecchhhh-
Q 000704 213 DQLGLNFCEESDSERIMMLCNRLKR-EKKILVILDDIWTSL---------DLERTGIPFGDVHRG-CKILVTSRRRDVL- 280 (1342)
Q Consensus 213 ~~l~~~~~~~~~~~~~~~l~~~l~~-~k~~LlvlDdv~~~~---------~~~~l~~~l~~~~~g-s~iliTtr~~~v~- 280 (1342)
+.. ....-...+..+...+.+ +++.+|++|++.... +-..+..|.. .+| -++|-+|...+..
T Consensus 248 ---g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 248 ---GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQ 321 (857)
T ss_pred ---ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHH
Confidence 000 000112334444444432 578999999986542 1122222222 233 3455444433321
Q ss_pred -----hhhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 281 -----VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 281 -----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
.........+.+...+.++...+++...
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1011223356777778899999887655
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.12 E-value=0.0014 Score=81.92 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=91.1
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCC-C---cceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGR-I---FDEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
...++||+++++++++.|......-+.++|.+|+|||++|+.+++...... . .++.+|.. +...++ +
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll---a- 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL---A- 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh---c-
Confidence 345889999999999988754444557899999999999999998753221 1 24455431 111111 0
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc----------ccccccCCCCCCCCCCcEEEEEecchhhhh--
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS----------LDLERTGIPFGDVHRGCKILVTSRRRDVLV-- 281 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~----------~~~~~l~~~l~~~~~gs~iliTtr~~~v~~-- 281 (1342)
+.. ........+..+...+.+.++.+|++|++... .+...+..++... ..-+||-+|...+...
T Consensus 256 --G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHh
Confidence 000 01112234455555565557789999998643 1111122222211 1234454444333211
Q ss_pred ----hhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 282 ----SEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 282 ----~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
........+.+++.+.++..++++...
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 012234579999999999999998765
No 174
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.11 E-value=0.0015 Score=63.90 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC-cE
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK-KI 241 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k-~~ 241 (1342)
|.|+|+.|+||||+|+.+++... +. .+.++.+.-.+ .........+..+.+...+.. +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~~-~~~i~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----FP-FIEIDGSELIS---------------SYAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----SE-EEEEETTHHHT---------------SSTTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----cc-ccccccccccc---------------ccccccccccccccccccccccce
Confidence 57999999999999999999875 21 23343322110 011112233444444444344 89
Q ss_pred EEEEcCCCCc
Q 000704 242 LVILDDIWTS 251 (1342)
Q Consensus 242 LlvlDdv~~~ 251 (1342)
+|++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999998654
No 175
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.11 E-value=0.00017 Score=77.41 Aligned_cols=134 Identities=23% Similarity=0.286 Sum_probs=69.9
Q ss_pred CCCccEEEecCCCCCcC-----CccCCCCCCCCEEEccCCCCCCC------ccccCCCCCCEEEccCCCCc-----ccCc
Q 000704 534 MPKLRVLVLTRMKLLTL-----PSSFCHLPNLESLCLDQCILGDI------AIIGNLKNLEILSLCCSDIE-----QLPR 597 (1342)
Q Consensus 534 l~~Lr~L~L~~~~i~~l-----p~~i~~L~~Lr~L~L~~~~i~~l------~~i~~L~~L~~L~Ls~~~i~-----~LP~ 597 (1342)
-+.|||+....|.+..- -..+...+.|+.+.+..|.|..- ..+..++||++|||+.|-++ .+-.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 44566666666655422 22344455666666666655321 35666667777777666554 3334
Q ss_pred ccCCCCcccEEeccCCCCCCcc-----CccccCCCCCCCEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEeec
Q 000704 598 EIGELTQLKLLDLSNCSKLKVI-----PPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHI 672 (1342)
Q Consensus 598 ~i~~L~~L~~L~L~~~~~l~~l-----p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 672 (1342)
.+..+++|+.|++++|. +..- -...-...++|++|.+.+|.+... ........+...+.|..|++++
T Consensus 236 aL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d-------a~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRD-------AALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred Hhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHH-------HHHHHHHHHhcchhhHHhcCCc
Confidence 45566666777666665 3221 111112356666666666655411 1111223334456666666666
Q ss_pred cCC
Q 000704 673 RDA 675 (1342)
Q Consensus 673 ~~~ 675 (1342)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 654
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.0089 Score=68.18 Aligned_cols=145 Identities=11% Similarity=0.058 Sum_probs=87.7
Q ss_pred ccc-hHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCC--------------------CcceEEEEEe
Q 000704 141 IES-RESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGR--------------------IFDEVVFAEV 198 (1342)
Q Consensus 141 ~~g-r~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 198 (1342)
++| .+..++.+...+..++++ ..-++|+.|+||||+|+.+.+..--.. |.|.......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 667777888887766554 569999999999999999987753211 2222111111
Q ss_pred cCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEE
Q 000704 199 SQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILV 272 (1342)
Q Consensus 199 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~ili 272 (1342)
+.... .+.+..+.+.+. .+++-++|+|++.... ..+.+...+-....++.+|+
T Consensus 87 ~~~i~---------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il 145 (329)
T PRK08058 87 GQSIK---------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAIL 145 (329)
T ss_pred cccCC---------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEE
Confidence 11111 122333333322 2566779999986652 34445444544446777777
Q ss_pred Eecchh-hhhhhcCcCccEEecCCCHHHHHHHHHH
Q 000704 273 TSRRRD-VLVSEMHCQNNYCVSVLNKEEAWSLFSK 306 (1342)
Q Consensus 273 Ttr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~ 306 (1342)
+|.+.. +..........+++.+++.++..+.+.+
T Consensus 146 ~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 146 LTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred EeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 776533 3332233466899999999999888765
No 177
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.08 E-value=0.0046 Score=75.19 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=93.6
Q ss_pred CCcccccchHHHHHHHHH---HHcC---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 136 EGHEFIESRESILNDILD---ALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~---~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
....++.|.++.++++.+ ++.. ...+-+.++|++|+|||++|+.+++.... . ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH---
Confidence 344556676665555444 3331 12335889999999999999999987542 1 233321
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc------------cc----cccCCCCC--CCC
Q 000704 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL------------DL----ERTGIPFG--DVH 265 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~------------~~----~~l~~~l~--~~~ 265 (1342)
.++.... .+ .....+..+.+......+.+|++||++... .+ ..+...+. ...
T Consensus 122 -~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 1111110 01 012233444555444577899999985531 01 11111111 122
Q ss_pred CCcEEEEEecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCCh
Q 000704 266 RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 266 ~gs~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 332 (1342)
.+-.||.||......+..+ .-...+.+...+.++-.++|+.++.......+ .....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 3445666665543222111 12457888889998999999887743221111 11347777777743
No 178
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.08 E-value=0.0061 Score=72.04 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
.-+.|+|+.|+|||+||+.+++..... -..+++++ ..++..++...+... ..+.+...+ .+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~------~~~f~~~~~~~l~~~--------~~~~f~~~~--~~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVR------SELFTEHLVSAIRSG--------EMQRFRQFY--RNV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEee------HHHHHHHHHHHHhcc--------hHHHHHHHc--ccC
Confidence 468899999999999999999987632 23345554 334555555554321 112222223 244
Q ss_pred EEEEEcCCCCccc--c--cccCCCCCC-CCCCcEEEEEecchh-----hhhh---hcCcCccEEecCCCHHHHHHHHHHH
Q 000704 241 ILVILDDIWTSLD--L--ERTGIPFGD-VHRGCKILVTSRRRD-----VLVS---EMHCQNNYCVSVLNKEEAWSLFSKV 307 (1342)
Q Consensus 241 ~LlvlDdv~~~~~--~--~~l~~~l~~-~~~gs~iliTtr~~~-----v~~~---~~~~~~~~~l~~L~~~~~~~lf~~~ 307 (1342)
-+|++||+..... + +.+...+.. ...|-.||+||.... +... .+..+..+.+.+++.++-..+++++
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 5888999865422 1 112111110 113557888885421 1111 2444568899999999999999988
Q ss_pred hCCCCCCccHHHHHHHHHHHhCC
Q 000704 308 VGNCVEDPDLQTVAIQVANECGG 330 (1342)
Q Consensus 308 ~~~~~~~~~~~~~~~~i~~~c~g 330 (1342)
+.... ..--+++...|++...|
T Consensus 284 ~~~~~-~~l~~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALS-IRIEETALDFLIEALSS 305 (445)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCC
Confidence 84211 11114556666666654
No 179
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.06 E-value=0.0076 Score=60.97 Aligned_cols=49 Identities=20% Similarity=0.106 Sum_probs=41.3
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...+++|-++.++++--.-.+.+.+-+.|.||+|+||||-+..+++..-
T Consensus 25 ~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3556889888888877766788899999999999999999988887664
No 180
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.04 E-value=0.0064 Score=61.32 Aligned_cols=137 Identities=15% Similarity=0.149 Sum_probs=78.6
Q ss_pred chHHHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCC------------------cceEEEEEecCC--
Q 000704 143 SRESILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRI------------------FDEVVFAEVSQT-- 201 (1342)
Q Consensus 143 gr~~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~------------------F~~~~wv~vs~~-- 201 (1342)
|.++..+.+.+.+..++++ .+-++|..|+||+|+|..+.+..--... .....|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4566777788887777766 5799999999999999999886542221 223344433322
Q ss_pred -cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecchh
Q 000704 202 -PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1342)
Q Consensus 202 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~~~ 278 (1342)
..++++. ++.+.+..... .+++-++|+||++.. +....+...+-....++++|++|++..
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 2333332 44443332211 257778999999876 455555555555557888888888665
Q ss_pred -hhhhhcCcCccEEecCCC
Q 000704 279 -VLVSEMHCQNNYCVSVLN 296 (1342)
Q Consensus 279 -v~~~~~~~~~~~~l~~L~ 296 (1342)
+..........+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 333233344566666653
No 181
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.04 E-value=0.0037 Score=70.15 Aligned_cols=103 Identities=15% Similarity=0.216 Sum_probs=67.4
Q ss_pred HHHHHHHHcC-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcce-EEEEEecCCc-CHHHHHHHHHHHhCCCCCCCCh
Q 000704 148 LNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTP-DLKRIRREIADQLGLNFCEESD 224 (1342)
Q Consensus 148 ~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~ 224 (1342)
..++++.+.. .+-.-+.|+|..|+|||||++.+++..... +-+. ++|+.+.+.. ++.++++.+...+.........
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3447777652 233457999999999999999999877633 2233 4787887665 6889999988876654322221
Q ss_pred HH------HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 225 SE------RIMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 225 ~~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
.. .+....+++. ++++++||+|++-..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 1222333332 489999999998543
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.015 Score=65.00 Aligned_cols=174 Identities=13% Similarity=0.082 Sum_probs=98.6
Q ss_pred HHHHHHHHHHcCCCeE-EEEEEcCCCCcHHHHHHHHHHHHhcCCCc----------------ceEEEEEecCCcCHHHHH
Q 000704 146 SILNDILDALRGPYVY-MIGVYGMAGIGKTTLVKEVARLAKEGRIF----------------DEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 146 ~~~~~l~~~l~~~~~~-vi~I~G~gG~GKTtLa~~v~~~~~~~~~F----------------~~~~wv~vs~~~~~~~~~ 208 (1342)
...+.+...+..++++ .+-++|+.|+||+|+|..+++..--.... .-..||.......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~----- 85 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT----- 85 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc-----
Confidence 4456677777666655 68899999999999999988765321111 1122221100000
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecc-hhhhh
Q 000704 209 REIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRR-RDVLV 281 (1342)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~-~~v~~ 281 (1342)
+......-..+.+.++.+.+. .+++-++|+|+++... .-+.+...+-.-..++.+|++|.+ ..+..
T Consensus 86 -------~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 86 -------GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred -------cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000000011233333443332 2577899999997763 222333333333346666666654 44444
Q ss_pred hhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 282 SEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 282 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
........+.+.+++.+++.+.+.+. | .+ +..+..++..++|.|+.+..+
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~-~--~~----~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQ-G--VS----ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHc-C--CC----hHHHHHHHHHcCCCHHHHHHH
Confidence 33344567899999999998888653 2 11 223667899999999866543
No 183
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.012 Score=66.83 Aligned_cols=146 Identities=23% Similarity=0.297 Sum_probs=90.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH--
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRL-- 235 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l-- 235 (1342)
.....+.+.|++|.|||+||.+++.. ..|..+--++- +++ .+-++......+...+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKiiSp------e~m------------iG~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKIISP------EDM------------IGLSESAKCAHIKKIFED 593 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEeCh------HHc------------cCccHHHHHHHHHHHHHH
Confidence 34567889999999999999999876 44776544421 111 0111222222222222
Q ss_pred -hcCCcEEEEEcCCCCcccccccCCCCCC-------------CCCCcEEEE--EecchhhhhhhcCc----CccEEecCC
Q 000704 236 -KREKKILVILDDIWTSLDLERTGIPFGD-------------VHRGCKILV--TSRRRDVLVSEMHC----QNNYCVSVL 295 (1342)
Q Consensus 236 -~~~k~~LlvlDdv~~~~~~~~l~~~l~~-------------~~~gs~ili--Ttr~~~v~~~~~~~----~~~~~l~~L 295 (1342)
-+..=-.||+||++..-+|-.++..+.+ ...|-|.+| ||....|... |+- ...|+++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~-m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQE-MGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHH-cCHHHhhhheeecCcc
Confidence 2345678999999998888888775432 234555444 7777777773 554 347888888
Q ss_pred CH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHh
Q 000704 296 NK-EEAWSLFSKVVGNCVEDPDLQTVAIQVANEC 328 (1342)
Q Consensus 296 ~~-~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c 328 (1342)
+. ++..+.++..- ...+.+...++++.+.+|
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhccc
Confidence 87 77777766532 123445566677777666
No 184
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.015 Score=63.30 Aligned_cols=187 Identities=18% Similarity=0.204 Sum_probs=109.4
Q ss_pred ccCCCcccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec
Q 000704 133 SYNEGHEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1342)
Q Consensus 133 ~~~~~~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1342)
.|......+-|-++.++++.+.+. . +..+=|-.+|++|.|||-||++|+++-... | +-|.
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At--F-----Irvv 217 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT--F-----IRVV 217 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce--E-----EEec
Confidence 344445567788888888887764 1 245668899999999999999999987632 4 3333
Q ss_pred CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc----------------ccccCCCCC-
Q 000704 200 QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD----------------LERTGIPFG- 262 (1342)
Q Consensus 200 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~----------------~~~l~~~l~- 262 (1342)
. .+-+++.|.+ ....+.++++--++..+..|.+|.++.... .-.+...+.
T Consensus 218 g---SElVqKYiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG 284 (406)
T COG1222 218 G---SELVQKYIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG 284 (406)
T ss_pred c---HHHHHHHhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC
Confidence 2 1222222211 223455566555567889999998855410 001111111
Q ss_pred -CCCCCcEEEEEecchhhhhh---hcCc-CccEEecCCCHHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHhCCCh---
Q 000704 263 -DVHRGCKILVTSRRRDVLVS---EMHC-QNNYCVSVLNKEEAWSLFSKVVGN--CVEDPDLQTVAIQVANECGGLP--- 332 (1342)
Q Consensus 263 -~~~~gs~iliTtr~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~c~glP--- 332 (1342)
+....-|||..|-..++.+- ..|. .+.+++..-+.+--.++|+-++.. ..++-+++ .+++.+.|.-
T Consensus 285 FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAd 360 (406)
T COG1222 285 FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGAD 360 (406)
T ss_pred CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHH
Confidence 12345689987776655443 1222 456777755566666777777742 22334444 5666666554
Q ss_pred -HHHHHHHHHhc
Q 000704 333 -IAILTVARTLR 343 (1342)
Q Consensus 333 -lai~~i~~~l~ 343 (1342)
-||.+=|++++
T Consensus 361 lkaictEAGm~A 372 (406)
T COG1222 361 LKAICTEAGMFA 372 (406)
T ss_pred HHHHHHHHhHHH
Confidence 45556666654
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.038 Score=61.84 Aligned_cols=161 Identities=12% Similarity=0.114 Sum_probs=97.4
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC-------------------CCcceEEEEEec---CCcC
Q 000704 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG-------------------RIFDEVVFAEVS---QTPD 203 (1342)
Q Consensus 147 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs---~~~~ 203 (1342)
..+.+.+.+..+++ ..+-++|+.|+||+++|+.+....--. .|-| ..|+.-. +...
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~~~~I~ 89 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKEGKSIT 89 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcCCCcCC
Confidence 44566666655554 478899999999999999998765311 1222 1222110 1111
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc-
Q 000704 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR- 276 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~- 276 (1342)
.+.+.++.+.+. .+++-++|+|+++.. ...+.+...+-....++.+|++|.+
T Consensus 90 ---------------------vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 90 ---------------------VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred ---------------------HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 222333333332 256678999999776 3444444444443456666665554
Q ss_pred hhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 277 RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 277 ~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
..+..........+.+.+++.+++.+.+... | .+ .+..+++.++|.|+.+.-+
T Consensus 149 ~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~--~~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 149 KRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-G--IT------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hhChHHHHhcceeEeCCCCCHHHHHHHHHHc-C--Cc------hHHHHHHHcCCCHHHHHHH
Confidence 4555543445668999999999999888653 2 11 1356789999999876543
No 186
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0019 Score=76.51 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=91.6
Q ss_pred ccchHHHHHHHHHHHc------CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000704 141 IESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1342)
-+|-++.++++++.|. +-+-++++.||++|+|||+|++.+++-.. +.|-. ++++.--|..+|.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--RkfvR---~sLGGvrDEAEIR------ 393 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKFVR---ISLGGVRDEAEIR------ 393 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCEEE---EecCccccHHHhc------
Confidence 4588899999999886 23457999999999999999999999875 45533 3344433333331
Q ss_pred hCCCCC-CCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc-c-----ccccCCCCCC-------------CCCCcEEEEEe
Q 000704 215 LGLNFC-EESDSERIMMLCNRLKREKKILVILDDIWTSL-D-----LERTGIPFGD-------------VHRGCKILVTS 274 (1342)
Q Consensus 215 l~~~~~-~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~-~-----~~~l~~~l~~-------------~~~gs~iliTt 274 (1342)
|.... -.+....+-+-..... .++=+++||.|+... + -.++...+.. .-.=|+|++.+
T Consensus 394 -GHRRTYIGamPGrIiQ~mkka~-~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFia 471 (782)
T COG0466 394 -GHRRTYIGAMPGKIIQGMKKAG-VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIA 471 (782)
T ss_pred -cccccccccCChHHHHHHHHhC-CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEe
Confidence 11100 0112222222222222 577899999986651 1 0111111110 01125666544
Q ss_pred cchhhh---hhhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 275 RRRDVL---VSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 275 r~~~v~---~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
...... .-.++...++++.+.+++|-.++-+++.
T Consensus 472 TANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 472 TANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333222 1146677899999999999999888776
No 187
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.015 Score=66.23 Aligned_cols=132 Identities=16% Similarity=0.170 Sum_probs=79.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
.-..+-|||..|.|||.|++++.+.... .......++++ .++...+++..+.. ...++..+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~--~~~~a~v~y~~----se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALA--NGPNARVVYLT----SEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHh--hCCCceEEecc----HHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 3678999999999999999999998873 34322233332 33444444444321 1222222222
Q ss_pred CcEEEEEcCCCCccc---ccc-cCCCCCC-CCCCcEEEEEecchh---------hhhhhcCcCccEEecCCCHHHHHHHH
Q 000704 239 KKILVILDDIWTSLD---LER-TGIPFGD-VHRGCKILVTSRRRD---------VLVSEMHCQNNYCVSVLNKEEAWSLF 304 (1342)
Q Consensus 239 k~~LlvlDdv~~~~~---~~~-l~~~l~~-~~~gs~iliTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf 304 (1342)
.-=++++||++.... |+. +...|.. ...|-.||+|++... +.. .+..+-++++.+.+.+....++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S-R~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS-RLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH-HHhceeEEeeCCCCHHHHHHHH
Confidence 223788999866422 211 1111111 123448999986532 222 3555678999999999999999
Q ss_pred HHHh
Q 000704 305 SKVV 308 (1342)
Q Consensus 305 ~~~~ 308 (1342)
.+++
T Consensus 254 ~kka 257 (408)
T COG0593 254 RKKA 257 (408)
T ss_pred HHHH
Confidence 9987
No 188
>PRK08116 hypothetical protein; Validated
Probab=96.92 E-value=0.0021 Score=70.57 Aligned_cols=102 Identities=22% Similarity=0.213 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.++|..|+|||.||..+++..... -..+++++ ..+++..+......... .....+.+.+. +-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhc-CCC
Confidence 358899999999999999999988633 34456665 44566666555432211 11223444453 233
Q ss_pred EEEEEcCCCC--cccccc--cCCCCCC-CCCCcEEEEEecch
Q 000704 241 ILVILDDIWT--SLDLER--TGIPFGD-VHRGCKILVTSRRR 277 (1342)
Q Consensus 241 ~LlvlDdv~~--~~~~~~--l~~~l~~-~~~gs~iliTtr~~ 277 (1342)
||||||+.. ..+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 899999943 334432 2111111 12455688888643
No 189
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.00042 Score=72.41 Aligned_cols=103 Identities=21% Similarity=0.317 Sum_probs=58.0
Q ss_pred CccEEEecCCCCCcCC--ccC-CCCCCCCEEEccCCCCCCC----ccccCCCCCCEEEccCCCCcccCccc-CCCCcccE
Q 000704 536 KLRVLVLTRMKLLTLP--SSF-CHLPNLESLCLDQCILGDI----AIIGNLKNLEILSLCCSDIEQLPREI-GELTQLKL 607 (1342)
Q Consensus 536 ~Lr~L~L~~~~i~~lp--~~i-~~L~~Lr~L~L~~~~i~~l----~~i~~L~~L~~L~Ls~~~i~~LP~~i-~~L~~L~~ 607 (1342)
.+..|.+.++.|...- ..| ....+++.|||.+|.|+.- .-+.+|++|++|+|++|.+..--... ..+.+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 4446677777765332 223 3567788888888877653 34567888888888887654221111 35566777
Q ss_pred EeccCCCCCCccCccccCCCCCCCEEEccCC
Q 000704 608 LDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1342)
Q Consensus 608 L~L~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 638 (1342)
|-|.+...-..-....+..++.+++|+++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 7666543111111111445555566665555
No 190
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0072 Score=73.40 Aligned_cols=175 Identities=17% Similarity=0.159 Sum_probs=105.7
Q ss_pred cccchHHHHHHHHHHHcCC---------CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 140 FIESRESILNDILDALRGP---------YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
++..-..+++++++.|..+ -.+=+-++|++|.|||-||++++....+- |+++|..-
T Consensus 315 G~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSE-------- 379 (774)
T KOG0731|consen 315 GVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSE-------- 379 (774)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHH--------
Confidence 3333445666667777632 14568899999999999999999877643 45555421
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc-----------------ccccCCCCCCCCCCc--EEE
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-----------------LERTGIPFGDVHRGC--KIL 271 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-----------------~~~l~~~l~~~~~gs--~il 271 (1342)
..+-+.. ....++..++..-+...+++|.+|++..... ++.+..-+.....+. -++
T Consensus 380 FvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 380 FVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 1111111 1135666777776667889999998755411 112211122122222 333
Q ss_pred EEecchhhhhh---hcCc-CccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 272 VTSRRRDVLVS---EMHC-QNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 272 iTtr~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
-+|...++.+. ..|. .+.+.++.-+.....++|+.++.......+..++++ |+....|.+=|.
T Consensus 455 a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 455 AATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred eccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 46666555543 1222 456788888889999999999864433345556666 888888877543
No 191
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.89 E-value=0.026 Score=63.32 Aligned_cols=176 Identities=7% Similarity=0.024 Sum_probs=98.2
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-------
Q 000704 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN------- 218 (1342)
Q Consensus 147 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~------- 218 (1342)
..+.+.+.+..+++ ..+-+.|+.|+||+++|+.++...--...... .....-..-+.+...-..+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 34556666665554 46779999999999999999987642111100 0000000000110000000
Q ss_pred CCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecch-hhhhhhcCcCccEE
Q 000704 219 FCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRR-DVLVSEMHCQNNYC 291 (1342)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~~-~v~~~~~~~~~~~~ 291 (1342)
....-..+.+.++.+.+. .+++-++|+|+++... ....+...+-....++.+|++|.+. .+..........+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 000012333444444432 2677788999998763 3444444444444566666666654 45443333456899
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHH
Q 000704 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAI 335 (1342)
Q Consensus 292 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai 335 (1342)
+.+++.++..+.+....+. + ...+...++.++|.|..+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~----~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA----E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc----C--hHHHHHHHHHcCCCHHHH
Confidence 9999999999888876432 1 112556788999999643
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.88 E-value=0.0016 Score=64.68 Aligned_cols=63 Identities=24% Similarity=0.455 Sum_probs=29.5
Q ss_pred hcCCCCccEEEecCCCCCcCCccCC-CCCCCCEEEccCCCCCCC---ccccCCCCCCEEEccCCCCc
Q 000704 531 FAGMPKLRVLVLTRMKLLTLPSSFC-HLPNLESLCLDQCILGDI---AIIGNLKNLEILSLCCSDIE 593 (1342)
Q Consensus 531 f~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~Ls~~~i~ 593 (1342)
|..++.|.+|.+++|.|..+-..+. .+.+|..|.|.+|.|..+ ..+..++.|++|.+-+|.+.
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchh
Confidence 4455555555555555554433332 233455555555544322 33444445555555444443
No 193
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0025 Score=67.28 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1342)
.++|+|..|.||||++..+..... +.|+++++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 588999999999999999998765 67888777754
No 194
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.77 E-value=0.015 Score=60.00 Aligned_cols=170 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred cccccchHHHHHH---HHHHHcC------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHH
Q 000704 138 HEFIESRESILND---ILDALRG------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 138 ~~~~~gr~~~~~~---l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1342)
..+++|.++.+.+ |++.|.+ -..+-|..+|++|.|||.+|+++++..++. | +.|- ..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vk----at~-- 186 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVK----ATE-- 186 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEec----hHH--
Confidence 4457787766544 4566653 346789999999999999999999987642 2 2221 112
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc----------c----ccccCCCCC--CCCCCcEEEE
Q 000704 209 REIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL----------D----LERTGIPFG--DVHRGCKILV 272 (1342)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~----------~----~~~l~~~l~--~~~~gs~ili 272 (1342)
-|.+..| +...++.++.++-.+..++.+.+|.+.... + .+++...+. ..+.|-..|-
T Consensus 187 -liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 187 -LIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred -HHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 2222332 134567777777777799999999875441 1 122222222 1445666666
Q ss_pred EecchhhhhhhcCc--CccEEecCCCHHHHHHHHHHHhCCC--CCCccHHHHHHHHHHHhCCC
Q 000704 273 TSRRRDVLVSEMHC--QNNYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVAIQVANECGGL 331 (1342)
Q Consensus 273 Ttr~~~v~~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~c~gl 331 (1342)
.|-+.+..+.+... ...++..--+++|-.+++..++... ..... .+.++++.+|+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~ 318 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGM 318 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCC
Confidence 66666655532332 3457777778899999998888321 11122 34566666663
No 195
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.76 E-value=8.3e-05 Score=68.43 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=37.9
Q ss_pred CCCCCCEEEccCCCCCCC-cc-ccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCEE
Q 000704 556 HLPNLESLCLDQCILGDI-AI-IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEEL 633 (1342)
Q Consensus 556 ~L~~Lr~L~L~~~~i~~l-~~-i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~L 633 (1342)
..++|...+|++|.+... +. ..+.+-+.+|++++|.|..+|.++..++.|+.|+++.|+ +...|.- +..|.+|-.|
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v-i~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRV-IAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHH-HHHHHhHHHh
Confidence 334444444444444332 11 223334555555555555555555555555555555554 4444443 3344444444
Q ss_pred EccC
Q 000704 634 YLGN 637 (1342)
Q Consensus 634 ~l~~ 637 (1342)
+..+
T Consensus 129 ds~~ 132 (177)
T KOG4579|consen 129 DSPE 132 (177)
T ss_pred cCCC
Confidence 4433
No 196
>PRK07261 topology modulation protein; Provisional
Probab=96.75 E-value=0.0037 Score=63.75 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC-CCcceEEE
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVF 195 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~w 195 (1342)
.|.|+|++|+||||||+++....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999998775421 23455555
No 197
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.063 Score=63.74 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHHc------CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHH
Q 000704 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
+-+|.++.++++++.+. ..+-++++.+|++|+|||.+|+.++.-.. +.|- -++|+.-.|+.+|-.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkFf---RfSvGG~tDvAeIkG---- 482 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKFF---RFSVGGMTDVAEIKG---- 482 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--CceE---EEeccccccHHhhcc----
Confidence 35688899999999886 34568999999999999999999998775 3342 345666556555421
Q ss_pred HhCCCCC-CCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc---------cccc---------cCCCCCC-CCCCcEEEEE
Q 000704 214 QLGLNFC-EESDSERIMMLCNRLKREKKILVILDDIWTSL---------DLER---------TGIPFGD-VHRGCKILVT 273 (1342)
Q Consensus 214 ~l~~~~~-~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---------~~~~---------l~~~l~~-~~~gs~iliT 273 (1342)
.... -......+.+-....+ ..+=|+.+|.|+... ++-+ |...+-+ .-.=|||++.
T Consensus 483 ---HRRTYVGAMPGkiIq~LK~v~-t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 483 ---HRRTYVGAMPGKIIQCLKKVK-TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred ---cceeeeccCChHHHHHHHhhC-CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 1100 0112222222222222 466788889886541 0111 1111111 1124777764
Q ss_pred ecchhhhhh---hcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 274 SRRRDVLVS---EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 274 tr~~~v~~~---~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
..-..+..- ..+..+.|+|.+...+|-..+-.++.
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 433322221 34456788898888888777766654
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.026 Score=65.46 Aligned_cols=152 Identities=17% Similarity=0.214 Sum_probs=89.5
Q ss_pred CcccccchHHHHHHHHHHHc---C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCH
Q 000704 137 GHEFIESRESILNDILDALR---G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~---~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1342)
.+..+.|.+..+.++.+++. . ...+=|-++|++|+|||.||+++++...+- |+.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch---
Confidence 35567788887777776654 1 134568899999999999999999988743 3444332
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc---cc----------cccCCC---CCC-CCCC
Q 000704 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL---DL----------ERTGIP---FGD-VHRG 267 (1342)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~---~~----------~~l~~~---l~~-~~~g 267 (1342)
+|+....+. .+..+.++++.-....++++++|+++... +| ..+... +.. ...|
T Consensus 258 -----eivSGvSGE-----SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGVSGE-----SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhcccCcc-----cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 222222221 33566777777777799999999986541 11 111111 111 1113
Q ss_pred cEEEE---Eecchhhhhh--hcCc-CccEEecCCCHHHHHHHHHHHh
Q 000704 268 CKILV---TSRRRDVLVS--EMHC-QNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 268 s~ili---Ttr~~~v~~~--~~~~-~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
-.||| |+|-..+-.. ..|. .+.|.+.--+++.-.++++..+
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 23333 5554443332 1222 3467777777777777776666
No 199
>PHA00729 NTP-binding motif containing protein
Probab=96.65 E-value=0.0099 Score=62.14 Aligned_cols=35 Identities=31% Similarity=0.355 Sum_probs=28.6
Q ss_pred HHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 150 DILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 150 ~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555555666789999999999999999999875
No 200
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.64 E-value=0.073 Score=55.65 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCC--h
Q 000704 148 LNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEES--D 224 (1342)
Q Consensus 148 ~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~--~ 224 (1342)
+..+...+ .++-+++.|+|.-|.|||++++........ +.++=|.++ ...+...+...|+..+..+....- .
T Consensus 40 l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 40 LLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 33333333 345579999999999999999955544331 222224443 445778888888888876322111 1
Q ss_pred -HHHHHHHHHHHhcCCc-EEEEEcCCCCc--ccccccCCCCCCCCCCc---EEEEEecch-------hhhhh-hcCcCcc
Q 000704 225 -SERIMMLCNRLKREKK-ILVILDDIWTS--LDLERTGIPFGDVHRGC---KILVTSRRR-------DVLVS-EMHCQNN 289 (1342)
Q Consensus 225 -~~~~~~l~~~l~~~k~-~LlvlDdv~~~--~~~~~l~~~l~~~~~gs---~iliTtr~~-------~v~~~-~~~~~~~ 289 (1342)
......+....++++| ..+++||.... ...+.++........++ +|+..-..+ .+... .....-.
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir 194 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIR 194 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEE
Confidence 1222334444556788 99999998655 22332222111111121 233322211 11110 1112223
Q ss_pred EEecCCCHHHHHHHHHHHhCCC-CCCc-cHHHHHHHHHHHhCCChHHHHHHHHH
Q 000704 290 YCVSVLNKEEAWSLFSKVVGNC-VEDP-DLQTVAIQVANECGGLPIAILTVART 341 (1342)
Q Consensus 290 ~~l~~L~~~~~~~lf~~~~~~~-~~~~-~~~~~~~~i~~~c~glPlai~~i~~~ 341 (1342)
|++.|++.++...+++.+.+.. .+.+ --.+....|.....|.|.+|.-++..
T Consensus 195 ~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 195 IELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred EecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 8999999999988888877321 1111 12455678899999999999876643
No 201
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.57 E-value=0.045 Score=70.32 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHc------CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.++|.++.++++.+++. ....+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 36788888888887654 22345899999999999999999999875
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0036 Score=62.25 Aligned_cols=103 Identities=29% Similarity=0.339 Sum_probs=49.7
Q ss_pred CCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcccCC-CCcccEEeccCCCC--CCccCccccCCCCCCCEEEcc
Q 000704 560 LESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGE-LTQLKLLDLSNCSK--LKVIPPNVISSLSQLEELYLG 636 (1342)
Q Consensus 560 Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~-L~~L~~L~L~~~~~--l~~lp~~~l~~L~~L~~L~l~ 636 (1342)
...+||++|.+..+..+..+..|.+|.+++|.|+.+-..+.. +++|..|.+.+|+. +.++.+ +..+++|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p--La~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP--LASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch--hccCCccceeeec
Confidence 344555555555555555555555555555555555444332 33455555555431 122222 4455566666655
Q ss_pred CCcccccccccccccCCCChhhhcCCCCCCEEEeec
Q 000704 637 NTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHI 672 (1342)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~ 672 (1342)
+|.+.. ....-.-.+..+++|+.|+...
T Consensus 122 ~Npv~~--------k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEH--------KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhc--------ccCceeEEEEecCcceEeehhh
Confidence 554321 0111223455566666666543
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.56 E-value=0.049 Score=70.31 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHHHc-------CCC--eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 140 FIESRESILNDILDALR-------GPY--VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~-------~~~--~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.++|.+..++.+...+. +++ ..++.++|+.|+|||++|+.+++...
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788888888877765 112 34788999999999999999997653
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.08 Score=59.94 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=65.0
Q ss_pred HHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc-hhhhhhhcCcCccEEecCCCHH
Q 000704 226 ERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNNYCVSVLNKE 298 (1342)
Q Consensus 226 ~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~~~~~~~~~l~~L~~~ 298 (1342)
+.+..+.+.+. .+++-++|+|+++.. ...+.+...+-...+++.+|++|.+ ..+..........+.+.+++.+
T Consensus 115 dqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~ 194 (342)
T PRK06964 115 EQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPE 194 (342)
T ss_pred HHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHH
Confidence 44445555443 256778899999776 3455555545444456665555544 5555433344568999999999
Q ss_pred HHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHH
Q 000704 299 EAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTV 338 (1342)
Q Consensus 299 ~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i 338 (1342)
+..+.+... | . +. ...++..++|.|..+..+
T Consensus 195 ~~~~~L~~~-~--~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 195 AAAAWLAAQ-G--V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred HHHHHHHHc-C--C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 999888764 2 1 11 223577889999755443
No 205
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.54 E-value=0.013 Score=69.59 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=83.0
Q ss_pred cccccchHHHHHHHHHHHc-------C---CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHH
Q 000704 138 HEFIESRESILNDILDALR-------G---PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~-------~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (1342)
...+.|.+..++.+.+... . ...+-|-++|++|.|||.+|+.+++.... .| +-+..+ ++
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~--~~---~~l~~~------~l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL--PL---LRLDVG------KL 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEEEhH------Hh
Confidence 4456677666655544211 1 23456889999999999999999987652 12 111111 11
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc--------------ccccCCCCCCCCCCcEEEEE
Q 000704 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------------LERTGIPFGDVHRGCKILVT 273 (1342)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--------------~~~l~~~l~~~~~gs~iliT 273 (1342)
. . ...+. ....+..+.+......+++|++|+++.... ...+...+.....+--||.|
T Consensus 296 ~----~----~~vGe-se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 F----G----GIVGE-SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c----c----cccCh-HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 0 11111 122344444444446899999999864310 00111111122233345557
Q ss_pred ecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhC
Q 000704 274 SRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1342)
Q Consensus 274 tr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 309 (1342)
|......+..+ .-...+.++.-+.++-.++|+.+..
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 75543222111 1245688888899999999998874
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.53 E-value=0.0064 Score=62.84 Aligned_cols=126 Identities=25% Similarity=0.279 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec----CCc-----CHHH----HHHH
Q 000704 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS----QTP-----DLKR----IRRE 210 (1342)
Q Consensus 144 r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~~~----~~~~ 210 (1342)
+..+-...++.|. +..++.+.|++|.|||.||.+.+-+.-....|+.++++.-. +.. +.++ ...-
T Consensus 5 ~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p 82 (205)
T PF02562_consen 5 KNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRP 82 (205)
T ss_dssp -SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHH
T ss_pred CCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHH
Confidence 3344455566665 45689999999999999999998776556889888876321 110 1111 1111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHH---------HhcC---CcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc
Q 000704 211 IADQLGLNFCEESDSERIMMLCNR---------LKRE---KKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR 276 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~---------l~~~---k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~ 276 (1342)
+...+..-..... .+.+.+. ..+| +..+||+|++.+. .++..+... .+.|||||++=-.
T Consensus 83 ~~d~l~~~~~~~~----~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 83 IYDALEELFGKEK----LEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHTTTS-TTC----HHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHhChHh----HHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 2222221111111 1111110 0013 5679999999776 456666443 4579999998755
Q ss_pred hh
Q 000704 277 RD 278 (1342)
Q Consensus 277 ~~ 278 (1342)
..
T Consensus 156 ~Q 157 (205)
T PF02562_consen 156 SQ 157 (205)
T ss_dssp --
T ss_pred ee
Confidence 43
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.068 Score=60.74 Aligned_cols=165 Identities=12% Similarity=0.057 Sum_probs=97.8
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC--------------------CCcceEEEEEecCCcCHH
Q 000704 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG--------------------RIFDEVVFAEVSQTPDLK 205 (1342)
Q Consensus 147 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~ 205 (1342)
.-+++.+.+..+++ ..+-+.|+.|+||+|+|..++...--. .|-|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 45667777765554 467799999999999999988766311 11121 12211000
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecc-hh
Q 000704 206 RIRREIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRR-RD 278 (1342)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~-~~ 278 (1342)
...-..+.+.++.+.+. .+++-++|+|+++... .-+.+...+-....++.+|++|.+ ..
T Consensus 85 --------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~ 150 (334)
T PRK07993 85 --------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPAR 150 (334)
T ss_pred --------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhh
Confidence 00011233444444433 3677899999987763 334443334333456666666654 44
Q ss_pred hhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHH
Q 000704 279 VLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAIL 336 (1342)
Q Consensus 279 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~ 336 (1342)
+..........+.+.+++.+++.+.+....+ . + .+.+..++..++|.|..+.
T Consensus 151 lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~--~--~--~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 151 LLATLRSRCRLHYLAPPPEQYALTWLSREVT--M--S--QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ChHHHHhccccccCCCCCHHHHHHHHHHccC--C--C--HHHHHHHHHHcCCCHHHHH
Confidence 5543333455789999999999888765432 1 1 2236788999999996543
No 208
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.48 E-value=0.00023 Score=65.58 Aligned_cols=82 Identities=23% Similarity=0.397 Sum_probs=40.7
Q ss_pred CCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCccCCCCCCCCEEEccCCCCCCCccccCCCCCCEEEccC
Q 000704 510 PHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPSSFCHLPNLESLCLDQCILGDIAIIGNLKNLEILSLCC 589 (1342)
Q Consensus 510 ~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~~i~~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~ 589 (1342)
.+|...++++|.+ ..+|..+-.+++.++.|++++|.|..+|..+..++.|| .|+++.
T Consensus 53 ~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr----------------------~lNl~~ 109 (177)
T KOG4579|consen 53 YELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR----------------------SLNLRF 109 (177)
T ss_pred ceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh----------------------hccccc
Confidence 3444444554433 34444443444455555555555555555554444444 455555
Q ss_pred CCCcccCcccCCCCcccEEeccCCC
Q 000704 590 SDIEQLPREIGELTQLKLLDLSNCS 614 (1342)
Q Consensus 590 ~~i~~LP~~i~~L~~L~~L~L~~~~ 614 (1342)
|.+...|.-|..|.+|-.|+..++.
T Consensus 110 N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 110 NPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred CccccchHHHHHHHhHHHhcCCCCc
Confidence 5555555555555555555554443
No 209
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.39 E-value=0.034 Score=58.19 Aligned_cols=227 Identities=16% Similarity=0.129 Sum_probs=123.4
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhc----CCCcceEEEEEecCC----------c---
Q 000704 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQT----------P--- 202 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~----------~--- 202 (1342)
.+.++++....+.......+.+-.-++|+.|.||-|.+..+.+..-- +-.-+...|.+-|.. +
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35567777777776665677899999999999999998888876531 122345556544433 1
Q ss_pred --------CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcE-EEEEcCCCCc--ccccccCCCCCCCCCCcEEE
Q 000704 203 --------DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS--LDLERTGIPFGDVHRGCKIL 271 (1342)
Q Consensus 203 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~--~~~~~l~~~l~~~~~gs~il 271 (1342)
.-+-+.++|+++......-+ ....+.| ++|+-.+++. ++-..++.-.-.-...+|+|
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qie------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlI 161 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQIE------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLI 161 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcchh------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEE
Confidence 12334444444433221100 0012444 3444444433 22222222222223456776
Q ss_pred EEecc--hhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCC-CCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCC---
Q 000704 272 VTSRR--RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGN-CVEDPDLQTVAIQVANECGGLPIAILTVARTLRNK--- 345 (1342)
Q Consensus 272 iTtr~--~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~--- 345 (1342)
+.--+ +-+.. .....-.+++...+++|-...+++.+.. ...-+ ++++.+|+++++|.-.-+..+-.+.+-+
T Consensus 162 l~cns~SriIep-IrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~ 238 (351)
T KOG2035|consen 162 LVCNSTSRIIEP-IRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEP 238 (351)
T ss_pred EEecCcccchhH-HhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcccc
Confidence 63221 11111 1122346788899999999999988732 12222 7889999999998765444444443311
Q ss_pred --------ChhHHHHHHHHHhhcccCCcchHHHHHhHHHHHhccc
Q 000704 346 --------PLFVWKKALQELRFSARNFTGLEALLGSTIELIYNYL 382 (1342)
Q Consensus 346 --------~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L 382 (1342)
+..+|+.++.+..........-..++ .+-..-|+-|
T Consensus 239 ~~a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~-~vR~~LYeLL 282 (351)
T KOG2035|consen 239 FTANSQVIPKPDWEIYIQEIARVILKEQSPAKLL-EVRGRLYELL 282 (351)
T ss_pred ccccCCCCCCccHHHHHHHHHHHHHhccCHHHHH-HHHHHHHHHH
Confidence 12349999888764332222233344 4444455533
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.37 E-value=0.085 Score=58.14 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=36.3
Q ss_pred HHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHH
Q 000704 146 SILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 146 ~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1342)
..++++..++..+ .-|.++|.+|+|||++|+.+.+... . ..++++.....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--C---CEEEEeCCccCCHHHHh
Confidence 3455566665433 2456899999999999999987432 2 23456666655555554
No 211
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.075 Score=65.45 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHHHHc-------C--CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 140 FIESRESILNDILDALR-------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~-------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.++|.++.++.+.+.+. + ..+.+.-.+|+.|+|||.||++++...--. =+..+-+..|+......+-
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~--e~aliR~DMSEy~EkHsVS-- 567 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD--EQALIRIDMSEYMEKHSVS-- 567 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC--CccceeechHHHHHHHHHH--
Confidence 47799999999988876 2 245678889999999999999999876311 1444545444433222222
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCcE-EEEEcCCCCc
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLKREKKI-LVILDDIWTS 251 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~-LlvlDdv~~~ 251 (1342)
.+-+..++--..+.-..+-+..+ .++| +|.||+|+..
T Consensus 568 ---rLIGaPPGYVGyeeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 568 ---RLIGAPPGYVGYEEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred ---HHhCCCCCCceeccccchhHhhh-cCCCeEEEechhhhc
Confidence 22222221101111223444444 5666 7778999876
No 212
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.33 E-value=0.015 Score=62.07 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++... ++..++.+.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~~ 59 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQI 59 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHHH
Confidence 357999999999999999999887765 2356889998875 666665543
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.33 E-value=0.021 Score=59.48 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=55.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCE----ESDSERIMMLCNRL 235 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~~~l 235 (1342)
+||.+||+.|+||||.+.+++.....+ -..+..++.. ......+-++..++.++..... .+..+.+.+..+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 689999999999999999999888744 4456667654 3335667778888888865321 22333444444444
Q ss_pred hcCCcEEEEEcCCC
Q 000704 236 KREKKILVILDDIW 249 (1342)
Q Consensus 236 ~~~k~~LlvlDdv~ 249 (1342)
...+.=+|++|-..
T Consensus 80 ~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 80 RKKGYDLVLIDTAG 93 (196)
T ss_dssp HHTTSSEEEEEE-S
T ss_pred hhcCCCEEEEecCC
Confidence 42334477778653
No 214
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.32 E-value=0.046 Score=70.08 Aligned_cols=171 Identities=18% Similarity=0.216 Sum_probs=95.2
Q ss_pred cccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCH
Q 000704 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1342)
...+.|.+..++.+.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.++.
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~---- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRG---- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEeh----
Confidence 4456677777666665543 0 1234588999999999999999998764 223 22221
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc--------------ccccCCCCCC--CCCCc
Q 000704 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------------LERTGIPFGD--VHRGC 268 (1342)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--------------~~~l~~~l~~--~~~gs 268 (1342)
.++ ... ..++ ....+..++.......+.+|++|++..... ...+...+.. ...+-
T Consensus 521 ~~l----~~~----~vGe-se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 521 PEI----LSK----WVGE-SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HHH----hhc----ccCc-HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111 111 1111 123445555555556789999999854310 1111111211 12344
Q ss_pred EEEEEecchhhhhhhc----CcCccEEecCCCHHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCCh
Q 000704 269 KILVTSRRRDVLVSEM----HCQNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 269 ~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1342)
-||.||......+.++ .-...+.+...+.++-.++|+.+..... ...+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 4565665544333211 2245788888899999999987664221 1223 345667777644
No 215
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.81 Score=52.27 Aligned_cols=153 Identities=18% Similarity=0.152 Sum_probs=80.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
|=--++|++|.|||+++.++++... |+..- ...+...+-.+ +.++...- ..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIyd-LeLt~v~~n~d---------------------Lr~LL~~t--~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYD-LELTEVKLDSD---------------------LRHLLLAT--PNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEE-eeeccccCcHH---------------------HHHHHHhC--CCC
Confidence 3456899999999999999999875 55432 11211111111 22222221 355
Q ss_pred EEEEEcCCCCccc-----------cc---------ccCCCCC--CCCC-CcEEEE-Eecchhhhhh---hcCc-CccEEe
Q 000704 241 ILVILDDIWTSLD-----------LE---------RTGIPFG--DVHR-GCKILV-TSRRRDVLVS---EMHC-QNNYCV 292 (1342)
Q Consensus 241 ~LlvlDdv~~~~~-----------~~---------~l~~~l~--~~~~-gs~ili-Ttr~~~v~~~---~~~~-~~~~~l 292 (1342)
-+||+.|++-..+ .+ -+...+. +... +=|||| ||-..+-.+. ..|. ...+.|
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 5666666543311 00 0111111 0111 235555 7766554433 1222 345788
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHH-HHhcCC
Q 000704 293 SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVA-RTLRNK 345 (1342)
Q Consensus 293 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~-~~l~~~ 345 (1342)
.--+.+.-..||.++.+...++. +..+|.+...|.-+.=.-+| .++..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 88999999999999987533333 34455555555544434444 444554
No 216
>PRK08181 transposase; Validated
Probab=96.32 E-value=0.0061 Score=66.53 Aligned_cols=79 Identities=20% Similarity=0.136 Sum_probs=48.9
Q ss_pred HHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHH
Q 000704 153 DALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLC 232 (1342)
Q Consensus 153 ~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 232 (1342)
+|+. +..-+.++|++|+|||.||..+.+.... ....++|++ ..+++.++...... ....+..
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~------~~~L~~~l~~a~~~--------~~~~~~l 162 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTR------TTDLVQKLQVARRE--------LQLESAI 162 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeee------HHHHHHHHHHHHhC--------CcHHHHH
Confidence 4654 2345999999999999999999987652 233456664 34566555433211 1122334
Q ss_pred HHHhcCCcEEEEEcCCCCc
Q 000704 233 NRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 233 ~~l~~~k~~LlvlDdv~~~ 251 (1342)
+.+. +-=|||+||+...
T Consensus 163 ~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHh--cCCEEEEeccccc
Confidence 4442 5569999999544
No 217
>PRK12377 putative replication protein; Provisional
Probab=96.26 E-value=0.02 Score=61.69 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=49.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
+...+.++|..|+|||+||.++++.... ....++++++. +++..+-...... . ....+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~~---~----~~~~~l~~l--~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDNG---Q----SGEKFLQEL--C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhcc---c----hHHHHHHHh--c
Confidence 3467999999999999999999998863 23445666543 4555554443211 0 112344444 4
Q ss_pred CcEEEEEcCCCCc
Q 000704 239 KKILVILDDIWTS 251 (1342)
Q Consensus 239 k~~LlvlDdv~~~ 251 (1342)
+-=|||+||+...
T Consensus 163 ~~dLLiIDDlg~~ 175 (248)
T PRK12377 163 KVDLLVLDEIGIQ 175 (248)
T ss_pred CCCEEEEcCCCCC
Confidence 7779999999443
No 218
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.23 E-value=0.012 Score=65.98 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHcC----CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000704 143 SRESILNDILDALRG----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 143 gr~~~~~~l~~~l~~----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1342)
+|........+++.. ...+-+.++|..|+|||.||.++++.... ..+ .+.++++ .+++.++.......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~g~-~v~~~~~------~~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-KGV-SSTLLHF------PEFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-cCC-CEEEEEH------HHHHHHHHHHHhcC
Confidence 455555555566542 23457999999999999999999998862 233 3456654 35666665554321
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccc--cCCCC-CCC-CCCcEEEEEec
Q 000704 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLER--TGIPF-GDV-HRGCKILVTSR 275 (1342)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~--l~~~l-~~~-~~gs~iliTtr 275 (1342)
...+..+.+ .+-=||||||+... .+|.. +...+ ... ..+-.+|+||-
T Consensus 207 --------~~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 207 --------SVKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred --------cHHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 122334444 36779999999644 45642 32222 111 13445777774
No 219
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.22 E-value=0.12 Score=58.76 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=117.8
Q ss_pred hHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHH-HHHHHHHhcCCCcceEEEEEecCC---cCHHHHHHHHHHHhCCC-
Q 000704 144 RESILNDILDALRGPYVYMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEVVFAEVSQT---PDLKRIRREIADQLGLN- 218 (1342)
Q Consensus 144 r~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~- 218 (1342)
|.+..++|-.||.+..-.+|.|.|+-|.||+.|+ .++.++.+ .+..+.+.+- -+-..+++.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 77776543 2555554322 23344444454444311
Q ss_pred ----------------------CCC--CChHHHHHHHHHH----Hh-------------------------cCCcEEEEE
Q 000704 219 ----------------------FCE--ESDSERIMMLCNR----LK-------------------------REKKILVIL 245 (1342)
Q Consensus 219 ----------------------~~~--~~~~~~~~~l~~~----l~-------------------------~~k~~Llvl 245 (1342)
..+ ++.+..+..+... |+ ..+|=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 111 1222222221110 00 023678999
Q ss_pred cCCCCc-----------ccccccCCCCCCCCCCcEEEEEecchhhhhh---hc--CcCccEEecCCCHHHHHHHHHHHhC
Q 000704 246 DDIWTS-----------LDLERTGIPFGDVHRGCKILVTSRRRDVLVS---EM--HCQNNYCVSVLNKEEAWSLFSKVVG 309 (1342)
Q Consensus 246 Ddv~~~-----------~~~~~l~~~l~~~~~gs~iliTtr~~~v~~~---~~--~~~~~~~l~~L~~~~~~~lf~~~~~ 309 (1342)
|+.-.. .+|... +. .++-..||++|-+...... ++ ...+.+.|...+.+.|..+...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 997543 135432 11 1234468888876554432 23 2356789999999999999998884
Q ss_pred CCCCC-------------------ccHHHHHHHHHHHhCCChHHHHHHHHHhcCCC
Q 000704 310 NCVED-------------------PDLQTVAIQVANECGGLPIAILTVARTLRNKP 346 (1342)
Q Consensus 310 ~~~~~-------------------~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~ 346 (1342)
..... .....-....++..||=-.-+..+++.++...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe 286 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGE 286 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 32100 11233345677888888888888888887653
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.038 Score=65.24 Aligned_cols=168 Identities=20% Similarity=0.228 Sum_probs=88.0
Q ss_pred cCCCcccccchHHHHHHHHHHHc------------C-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 134 YNEGHEFIESRESILNDILDALR------------G-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 134 ~~~~~~~~~gr~~~~~~l~~~l~------------~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
+......+-|.++.+.+|-+.+. . ...+=|-.+|++|+||||+|+.+++... ..| ++|+.
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~--~nF-----lsvkg 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAG--MNF-----LSVKG 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhc--CCe-----eeccC
Confidence 44445566677766666654443 1 3467788999999999999999999876 334 33322
Q ss_pred CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc-------------ccccCCCCCCCCCC
Q 000704 201 TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD-------------LERTGIPFGDVHRG 267 (1342)
Q Consensus 201 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~-------------~~~l~~~l~~~~~g 267 (1342)
. +++.. +.++ .+..+.+++++-.+-...+|.||.++.... +..+..-+......
T Consensus 502 p----EL~sk--------~vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 502 P----ELFSK--------YVGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred H----HHHHH--------hcCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc
Confidence 1 11110 0011 122334444444445667778887654311 11111122222222
Q ss_pred cEEEE---EecchhhhhhhcC---cCccEEecCCCHHHHHHHHHHHhCCC--CCCccHHHHH
Q 000704 268 CKILV---TSRRRDVLVSEMH---CQNNYCVSVLNKEEAWSLFSKVVGNC--VEDPDLQTVA 321 (1342)
Q Consensus 268 s~ili---Ttr~~~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~ 321 (1342)
..|+| |-|...+-...+. -...+.++.-+.+.-.++|+.++... .+.-+++++|
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 23443 4444433332233 24556666666777788999988421 2223455554
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.19 E-value=0.0097 Score=64.80 Aligned_cols=139 Identities=19% Similarity=0.221 Sum_probs=76.1
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHH-HHhcCCCcceEE-E---EEecCCc---------C
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVAR-LAKEGRIFDEVV-F---AEVSQTP---------D 203 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~-~~~~~~~F~~~~-w---v~vs~~~---------~ 203 (1342)
.-|+-+|..+-.--+++|.++++..|.+.|.+|.|||-||-+..= +.-.++.|..++ . +.+.+.. .
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 345557777777788999999999999999999999999877552 222345565443 1 2233221 1
Q ss_pred HHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHH--Hh-------cC---CcEEEEEcCCCCcccccccCCCCCCCCCCcEE
Q 000704 204 LKRIRREIADQLGLNFCEE-SDSERIMMLCNR--LK-------RE---KKILVILDDIWTSLDLERTGIPFGDVHRGCKI 270 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~-~~~~~~~~l~~~--l~-------~~---k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~i 270 (1342)
+.-.++.|...+..-.... .....++.+..+ +. +| .+-+||+|...+...- .++..+...+.||||
T Consensus 303 m~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph-eikTiltR~G~GsKI 381 (436)
T COG1875 303 MGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH-ELKTILTRAGEGSKI 381 (436)
T ss_pred ccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH-HHHHHHHhccCCCEE
Confidence 1222223322221111100 011122222110 10 13 4568999999876421 122234456789999
Q ss_pred EEEecch
Q 000704 271 LVTSRRR 277 (1342)
Q Consensus 271 liTtr~~ 277 (1342)
+.|---.
T Consensus 382 Vl~gd~a 388 (436)
T COG1875 382 VLTGDPA 388 (436)
T ss_pred EEcCCHH
Confidence 9886543
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.19 E-value=0.0043 Score=59.46 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
||.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 223
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.15 E-value=0.013 Score=75.16 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=37.6
Q ss_pred cccchHHHHHHHHHHHc-------CC--CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 140 FIESRESILNDILDALR-------GP--YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.++|.+..++.+.+.+. ++ ...++.++|+.|+|||.+|+.++....
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57799999999988874 11 345789999999999999999988764
No 224
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.13 E-value=0.0073 Score=67.59 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=40.8
Q ss_pred cccchHHHHHHHHHHHcC------CCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 140 FIESRESILNDILDALRG------PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
.++|.++.++++++++.. ...+++.++|++|.||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 588999999999999862 34689999999999999999999998763
No 225
>PRK06921 hypothetical protein; Provisional
Probab=96.13 E-value=0.011 Score=64.73 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=44.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
....+.++|..|+|||+||.++++....+. -..++|++. .+++..+...+ .......+.+ .
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~~--~ 176 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNRM--K 176 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH------HHHHHHHHHHH----------HHHHHHHHHh--c
Confidence 356799999999999999999999875321 244566654 23333332222 1112233344 3
Q ss_pred CcEEEEEcCC
Q 000704 239 KKILVILDDI 248 (1342)
Q Consensus 239 k~~LlvlDdv 248 (1342)
+-=||||||+
T Consensus 177 ~~dlLiIDDl 186 (266)
T PRK06921 177 KVEVLFIDDL 186 (266)
T ss_pred CCCEEEEecc
Confidence 5569999999
No 226
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.065 Score=56.56 Aligned_cols=171 Identities=22% Similarity=0.249 Sum_probs=92.2
Q ss_pred cccccchHHHHHHHHHHHc----------C--CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHH
Q 000704 138 HEFIESRESILNDILDALR----------G--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~----------~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1342)
...+.|-+..++.|-+... . ...+-|.++|++|.||+.||++|+.... .-|.+||...-+.
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-------STFFSvSSSDLvS 204 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-------STFFSVSSSDLVS 204 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-------CceEEeehHHHHH
Confidence 3445566666666655532 1 2357899999999999999999998654 2245665532111
Q ss_pred HHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc---------ccccccCCCC-------CCCCCCcE
Q 000704 206 RIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS---------LDLERTGIPF-------GDVHRGCK 269 (1342)
Q Consensus 206 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~---------~~~~~l~~~l-------~~~~~gs~ 269 (1342)
+. ++ + ....+..+++--++.|+-+|.+|.|... +.-..|..-| .....|.-
T Consensus 205 KW-------mG-----E-SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 205 KW-------MG-----E-SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVL 271 (439)
T ss_pred HH-------hc-----c-HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceE
Confidence 11 11 1 1234445555555679999999998654 1111122111 12334555
Q ss_pred EEEEecchhhhhhhcCc--CccEEecCCCHHHHH-HHHHHHhCCCCCCccHHHHHHHHHHHhCC
Q 000704 270 ILVTSRRRDVLVSEMHC--QNNYCVSVLNKEEAW-SLFSKVVGNCVEDPDLQTVAIQVANECGG 330 (1342)
Q Consensus 270 iliTtr~~~v~~~~~~~--~~~~~l~~L~~~~~~-~lf~~~~~~~~~~~~~~~~~~~i~~~c~g 330 (1342)
|+=.|-..-+.++++.. ...|-+ ||++..|. .+|+-+.|+.. +.-.+.--+.++++..|
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEG 333 (439)
T ss_pred EEecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCC
Confidence 55567666555542222 122222 45665555 46777777532 22223334555666554
No 227
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.12 E-value=0.013 Score=74.15 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=85.0
Q ss_pred cccchHHHHHHHHHHHc------CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHH
Q 000704 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
..+|.++.++++++++. .....++.++|++|+||||+|+.++.... ..|-. +..+...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~~---i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYVR---MALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEEE---EEcCCCCCHHHhccchhc
Confidence 46788999999998876 13456899999999999999999998664 33422 333333333322211100
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc------ccccCCCCCC---------------CCCCcEEEE
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------LERTGIPFGD---------------VHRGCKILV 272 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------~~~l~~~l~~---------------~~~gs~ili 272 (1342)
..+ .......+.+ .... .+.-+++||++..... ...+...+.. .-...-+|.
T Consensus 398 ~~g-----~~~G~~~~~l-~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~ 470 (784)
T PRK10787 398 YIG-----SMPGKLIQKM-AKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVA 470 (784)
T ss_pred cCC-----CCCcHHHHHH-HhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEE
Confidence 111 0111111111 1111 2345788999865421 1112111111 012233444
Q ss_pred EecchhhhhhhcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 273 TSRRRDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 273 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
||....+.....+....+.+.+++.+|-.++.+++.
T Consensus 471 TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 471 TSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred cCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 554443333234455678999999988888877654
No 228
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.10 E-value=0.031 Score=71.66 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=92.9
Q ss_pred cccccchHHHHHHHHHHHc----C---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCH
Q 000704 138 HEFIESRESILNDILDALR----G---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~----~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1342)
..++.|.+..++++.+++. . ...+-|.++|++|+||||+|+.+++... ..| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE-----EEEecH---
Confidence 4457788888888877653 1 2235688999999999999999998764 222 222211
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc-------------cccccCCCCCC-CCCCcEE
Q 000704 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------------DLERTGIPFGD-VHRGCKI 270 (1342)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~-------------~~~~l~~~l~~-~~~gs~i 270 (1342)
++.. .. .. .....+..+++........+|++|++.... ....+...+.. ...+..+
T Consensus 247 -~i~~----~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIMS----KY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHhc----cc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1111 00 00 112234444544444677899999985431 01112111111 1223334
Q ss_pred EE-Eecchh-hhhh--hcC-cCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 271 LV-TSRRRD-VLVS--EMH-CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 271 li-Ttr~~~-v~~~--~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
+| ||.... +... ..+ -...+.+...+.++-.++++.......... ......+++.+.|.--|
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 44 444322 2111 011 134677888888888888886653211111 11245677888876543
No 229
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.10 E-value=0.014 Score=74.31 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=58.9
Q ss_pred cccchHHHHHHHHHHHcC-------C--CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 140 FIESRESILNDILDALRG-------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+++... ...+.+..++..+...+-
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~~~~-- 527 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKHTVS-- 527 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcccHH--
Confidence 456777788888777651 1 244688999999999999999998762 334555554432211111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+-++.. .+-...+....+.+.+.....-+++||+++..
T Consensus 528 --~lig~~-~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 528 --RLIGAP-PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred --HHhcCC-CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 112211 11001111223344444345569999999866
No 230
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.10 E-value=0.027 Score=62.64 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=50.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
..++|+|+|++|+||||++..++.....+..-..+..|+.... ....+.++.-.+.++...........+......+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~- 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR- 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-
Confidence 3469999999999999999999987763311124555654421 12333444445555544333233333444444443
Q ss_pred CCcEEEEEcCC
Q 000704 238 EKKILVILDDI 248 (1342)
Q Consensus 238 ~k~~LlvlDdv 248 (1342)
..=+|++|..
T Consensus 272 -~~d~vliDt~ 281 (282)
T TIGR03499 272 -DKDLILIDTA 281 (282)
T ss_pred -CCCEEEEeCC
Confidence 3347777753
No 231
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.09 E-value=0.00027 Score=73.05 Aligned_cols=105 Identities=29% Similarity=0.376 Sum_probs=70.2
Q ss_pred CCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCc-cccCCCCCCCEEEc
Q 000704 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPP-NVISSLSQLEELYL 635 (1342)
Q Consensus 557 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~-~~l~~L~~L~~L~l 635 (1342)
|.+.+-|+.-||.+.+++.+.+++.|++|.|+-|+|+.| ..+..+++|+.|+|+.|. +..+.+ .-+.+|++|+.|++
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 445566777777777777777888888888888888776 357778888888888765 555443 11567788888888
Q ss_pred cCCcccccccccccccCCCChhhhcCCCCCCEEE
Q 000704 636 GNTSVEWEFEGLNLERNNASLQELSILSHLTTLE 669 (1342)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~ 669 (1342)
..|...+.. ..+.-...|.-|++|+.|+
T Consensus 96 ~ENPCc~~a------g~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEA------GQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCccccc------chhHHHHHHHHcccchhcc
Confidence 776543111 1122235577778888776
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.06 E-value=0.0031 Score=65.78 Aligned_cols=110 Identities=25% Similarity=0.252 Sum_probs=53.9
Q ss_pred CCCCCCEEEccCCCCCCCccccCCCCCCEEEccCC--CCc-ccCcccCCCCcccEEeccCCCC--CCccCccccCCCCCC
Q 000704 556 HLPNLESLCLDQCILGDIAIIGNLKNLEILSLCCS--DIE-QLPREIGELTQLKLLDLSNCSK--LKVIPPNVISSLSQL 630 (1342)
Q Consensus 556 ~L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~--~i~-~LP~~i~~L~~L~~L~L~~~~~--l~~lp~~~l~~L~~L 630 (1342)
.+..|++|++.++.++.+..+-.|++|++|.++.| .+. .++.-..++++|++|++++|+. +..+++ +.++.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcch
Confidence 33444455555555555555555566666666655 222 4444444456666666666541 122333 4555556
Q ss_pred CEEEccCCcccccccccccccCCCChhhhcCCCCCCEEEeeccCC
Q 000704 631 EELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDA 675 (1342)
Q Consensus 631 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~~L~~L~l~~~~~ 675 (1342)
..|++++|.... + ...--..+.-+++|+.|+-.....
T Consensus 119 ~~Ldl~n~~~~~-l-------~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-L-------DDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccc-c-------ccHHHHHHHHhhhhccccccccCC
Confidence 666666554431 0 011123344456666666544433
No 233
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.06 E-value=0.019 Score=62.49 Aligned_cols=91 Identities=23% Similarity=0.248 Sum_probs=55.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CCh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ESD 224 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~ 224 (1342)
.-.++.|+|.+|+||||+|.+++........ -..++|++....++.+++.+ +++..+..... .+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3479999999999999999999865432221 36789999888777655543 33433321110 011
Q ss_pred ---HHHHHHHHHHHhcC-CcEEEEEcCCCC
Q 000704 225 ---SERIMMLCNRLKRE-KKILVILDDIWT 250 (1342)
Q Consensus 225 ---~~~~~~l~~~l~~~-k~~LlvlDdv~~ 250 (1342)
......+...+.+. +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 11223334444444 677888888743
No 234
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.01 E-value=0.35 Score=56.24 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...||.++|..|+||||.|.+++...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999988776
No 235
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.027 Score=64.21 Aligned_cols=89 Identities=19% Similarity=0.192 Sum_probs=54.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
-.++.++|+.|+||||++.++......+.....+..++... .....+-++..++.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 46899999999999999999998764322223555665432 234556666667777665433222222333344443
Q ss_pred CcEEEEEcCCCC
Q 000704 239 KKILVILDDIWT 250 (1342)
Q Consensus 239 k~~LlvlDdv~~ 250 (1342)
++-+|++|..-.
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 445667998743
No 236
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.97 E-value=0.044 Score=59.36 Aligned_cols=89 Identities=22% Similarity=0.368 Sum_probs=56.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCc-ceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH-----
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE----- 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 226 (1342)
.-++|+|.+|.||||||+.+++..+. +| +.++++-+.+.. .+.++.+++.+.-..+ ...++...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 46899999999999999999998873 34 456667777665 4666766665432111 00111111
Q ss_pred -HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 -RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 -~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. +++++|+|+||+-..
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 1222334443 289999999998543
No 237
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.96 E-value=0.018 Score=74.70 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=63.6
Q ss_pred cccchHHHHHHHHHHHcC-------C--CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 140 FIESRESILNDILDALRG-------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~-------~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+...... .-...+.+..+.......+. .
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~~-~ 642 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSVA-R 642 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchHH-H
Confidence 477888888888888762 1 2457889999999999999999987641 12233444444332211111 1
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc--ccccccCCCC
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS--LDLERTGIPF 261 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~--~~~~~l~~~l 261 (1342)
+ ++.. ++-...+....+...+.+....+|+||++... ..+..+...+
T Consensus 643 l---~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 643 L---IGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred h---cCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 1 1111 11000011122334444344458999999766 2344444333
No 238
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.94 E-value=0.025 Score=55.99 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=67.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEE---ec------------------CCc---------------
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VS------------------QTP--------------- 202 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs------------------~~~--------------- 202 (1342)
+-..+-++|+.|.||||+.+.+|...+..+ ..+|+. ++ |++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt~---G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPTR---GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCCC---ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 346899999999999999999999887532 223321 00 111
Q ss_pred ------CHHHHHHHH---HHHhCCCCCC-------CChHHHHHHHHHHHhcCCcEEEEEcC----CCCcccccccCCCCC
Q 000704 203 ------DLKRIRREI---ADQLGLNFCE-------ESDSERIMMLCNRLKREKKILVILDD----IWTSLDLERTGIPFG 262 (1342)
Q Consensus 203 ------~~~~~~~~i---~~~l~~~~~~-------~~~~~~~~~l~~~l~~~k~~LlvlDd----v~~~~~~~~l~~~l~ 262 (1342)
...++.+.. ++..+..... ...+..-..+.+.+- +++-+++=|. ++....|+-+...-.
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 122333332 2333332111 111111122344444 6888888886 433345654433222
Q ss_pred CCCCCcEEEEEecchhhhhh
Q 000704 263 DVHRGCKILVTSRRRDVLVS 282 (1342)
Q Consensus 263 ~~~~gs~iliTtr~~~v~~~ 282 (1342)
-+..|..||++|.+..+...
T Consensus 183 inr~GtTVl~ATHd~~lv~~ 202 (223)
T COG2884 183 INRLGTTVLMATHDLELVNR 202 (223)
T ss_pred HhhcCcEEEEEeccHHHHHh
Confidence 35679999999999987663
No 239
>PRK04132 replication factor C small subunit; Provisional
Probab=95.93 E-value=0.11 Score=65.61 Aligned_cols=154 Identities=9% Similarity=0.013 Sum_probs=92.6
Q ss_pred CCCCcHHHHHHHHHHHHhcCCCc-ceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEc
Q 000704 168 MAGIGKTTLVKEVARLAKEGRIF-DEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILD 246 (1342)
Q Consensus 168 ~gG~GKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlD 246 (1342)
+.++||||+|..++++.-- +.+ ..++-++.|+...+..+ +++++.+..... +...+..++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~g-~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELFG-ENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhhc-ccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 7899999999999988631 222 23566677765555433 333333211100 001256799999
Q ss_pred CCCCcc--cccccCCCCCCCCCCcEEEEEecc-hhhhhhhcCcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Q 000704 247 DIWTSL--DLERTGIPFGDVHRGCKILVTSRR-RDVLVSEMHCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQ 323 (1342)
Q Consensus 247 dv~~~~--~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 323 (1342)
++.... +.+.+...+-.....+++|++|.+ ..+..........+.+.+++.++-...+...+....-. --.+....
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i~~e~L~~ 716 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQA 716 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHH
Confidence 998773 455555444433345666665544 44433223345689999999999888887766321111 11456789
Q ss_pred HHHHhCCChHHHHHH
Q 000704 324 VANECGGLPIAILTV 338 (1342)
Q Consensus 324 i~~~c~glPlai~~i 338 (1342)
|++.++|-+..+..+
T Consensus 717 Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 717 ILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHcCCCHHHHHHH
Confidence 999999988554433
No 240
>PRK06526 transposase; Provisional
Probab=95.92 E-value=0.0071 Score=65.71 Aligned_cols=74 Identities=22% Similarity=0.181 Sum_probs=44.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1342)
..-+.++|++|+|||+||..+....... .+ .+.|+ +..++...+...... . ........+ .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~~----~----~~~~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHHA----G----RLQAELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHhc----C----cHHHHHHHh--cc
Confidence 3468999999999999999998876532 22 23443 334555555433211 0 111222333 24
Q ss_pred cEEEEEcCCCCc
Q 000704 240 KILVILDDIWTS 251 (1342)
Q Consensus 240 ~~LlvlDdv~~~ 251 (1342)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 568999999654
No 241
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.90 E-value=0.059 Score=63.60 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=112.4
Q ss_pred cccccchHHHHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 138 HEFIESRESILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
+..++|.+.....|...+...+. .--...|+-|+||||+|+-++.-.--.. | ...+.+..-..-++|...-.
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhcCCc
Confidence 45678999888888888875543 3556789999999999999987654111 1 11122222222233332211
Q ss_pred CCC---CC--CChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcE-EEEEecchhhhhhhc
Q 000704 217 LNF---CE--ESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCK-ILVTSRRRDVLVSEM 284 (1342)
Q Consensus 217 ~~~---~~--~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~-iliTtr~~~v~~~~~ 284 (1342)
.+. +. ....+.+.++.+... +++.-..|+|+|.-. ..|..+..-+-.....-+ |+.||-.+.+.....
T Consensus 88 ~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl 167 (515)
T COG2812 88 IDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL 167 (515)
T ss_pred ccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh
Confidence 111 11 123344555555543 246668899998644 567666555543334444 455666666655455
Q ss_pred CcCccEEecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChH
Q 000704 285 HCQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPI 333 (1342)
Q Consensus 285 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPl 333 (1342)
.....|.++.++.++-...+...+..+....+ .+....|++..+|...
T Consensus 168 SRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 168 SRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred hccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 56778999999999888888887753222111 3445667777777543
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.89 E-value=0.35 Score=56.77 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=50.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEE----SDSERIMMLCN 233 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~----~~~~~~~~l~~ 233 (1342)
...+|.++|..|+||||.|..++...+.. .+ .++-|+... .....+.++.++++++...... .....+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 45799999999999999999999887632 33 334344332 1233555666777766543221 11222333333
Q ss_pred HHhcCCcEEEEEcCCC
Q 000704 234 RLKREKKILVILDDIW 249 (1342)
Q Consensus 234 ~l~~~k~~LlvlDdv~ 249 (1342)
... +. -+||+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 333 23 467778763
No 243
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.066 Score=60.45 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=48.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
+.++|+++|++|+||||++..++..... ..+ .+..++.... ....+-++..++.++...........+......+.+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~-~Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG-KKK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH-cCC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3479999999999999999999987652 222 3444544321 123333344444455443322223333333444432
Q ss_pred C-CcEEEEEcCCCC
Q 000704 238 E-KKILVILDDIWT 250 (1342)
Q Consensus 238 ~-k~~LlvlDdv~~ 250 (1342)
. +.=+|++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 1 234667776543
No 244
>PRK09183 transposase/IS protein; Provisional
Probab=95.85 E-value=0.013 Score=64.14 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=41.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
..+.|+|+.|+|||+||..++..... ... .+.+++ ..++...+....... .......... .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~------~~~l~~~l~~a~~~~--------~~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTT------AADLLLQLSTAQRQG--------RYKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEe------HHHHHHHHHHHHHCC--------cHHHHHHHHh-cCC
Confidence 46779999999999999999876542 222 333443 334444433221110 1112222211 355
Q ss_pred EEEEEcCCCCc
Q 000704 241 ILVILDDIWTS 251 (1342)
Q Consensus 241 ~LlvlDdv~~~ 251 (1342)
-++|+||+...
T Consensus 166 dlLiiDdlg~~ 176 (259)
T PRK09183 166 RLLIIDEIGYL 176 (259)
T ss_pred CEEEEcccccC
Confidence 69999999653
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.85 E-value=0.0055 Score=62.75 Aligned_cols=75 Identities=29% Similarity=0.342 Sum_probs=45.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
+..-+.++|..|+|||.||..+.+..-. ..+ .+.|++ ..+++..+-.. ..... ..++.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-~g~-~v~f~~------~~~L~~~l~~~----~~~~~----~~~~~~~l~-- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-KGY-SVLFIT------ASDLLDELKQS----RSDGS----YEELLKRLK-- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-TT---EEEEE------HHHHHHHHHCC----HCCTT----HCHHHHHHH--
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-CCc-ceeEee------cCceecccccc----ccccc----hhhhcCccc--
Confidence 3457999999999999999999987653 233 356664 34455554322 11111 223445554
Q ss_pred CcEEEEEcCCCCc
Q 000704 239 KKILVILDDIWTS 251 (1342)
Q Consensus 239 k~~LlvlDdv~~~ 251 (1342)
+-=||||||+...
T Consensus 108 ~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 RVDLLILDDLGYE 120 (178)
T ss_dssp TSSCEEEETCTSS
T ss_pred cccEeccccccee
Confidence 5567889998655
No 246
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.83 E-value=0.052 Score=58.58 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=26.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
.+..+|+|.|+.|.|||||++.+....+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999988764
No 247
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.82 E-value=0.0047 Score=63.97 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCccEEEecCCCCC-----cCCccCCCCCCCCEEEccCCCCCC-----------C-ccccCCCCCCEEEccCCCCc-cc
Q 000704 534 MPKLRVLVLTRMKLL-----TLPSSFCHLPNLESLCLDQCILGD-----------I-AIIGNLKNLEILSLCCSDIE-QL 595 (1342)
Q Consensus 534 l~~Lr~L~L~~~~i~-----~lp~~i~~L~~Lr~L~L~~~~i~~-----------l-~~i~~L~~L~~L~Ls~~~i~-~L 595 (1342)
+..+..++||+|.|. .+-..|.+-.+|+.-+++.-..+. + +.+-++++|+..+||.|-+. ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 555666666666654 233445555666666665432211 1 45667777777777777554 33
Q ss_pred Cc----ccCCCCcccEEeccCCCCCCccCccc-------------cCCCCCCCEEEccCCcccccccccccccCCCChhh
Q 000704 596 PR----EIGELTQLKLLDLSNCSKLKVIPPNV-------------ISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQE 658 (1342)
Q Consensus 596 P~----~i~~L~~L~~L~L~~~~~l~~lp~~~-------------l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 658 (1342)
|. -|++-+.|.||.+++|. +..+..+- ..+-+.|++.....|.+.- .........
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-------gs~~~~a~~ 180 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-------GSKELSAAL 180 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-------CcHHHHHHH
Confidence 32 35666777788777765 44333221 2344667777766665430 000111233
Q ss_pred hcCCCCCCEEEeeccCCC
Q 000704 659 LSILSHLTTLEIHIRDAV 676 (1342)
Q Consensus 659 L~~L~~L~~L~l~~~~~~ 676 (1342)
+....+|+.+.|..|.+.
T Consensus 181 l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 181 LESHENLKEVKIQQNGIR 198 (388)
T ss_pred HHhhcCceeEEeeecCcC
Confidence 444456777777666543
No 248
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.80 E-value=0.028 Score=68.44 Aligned_cols=48 Identities=31% Similarity=0.403 Sum_probs=38.4
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...++|.+..++.+...+......-+.|+|..|+||||+|+.+++..+
T Consensus 64 f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 445789988888888777655445678999999999999999987543
No 249
>PRK06696 uridine kinase; Validated
Probab=95.79 E-value=0.015 Score=62.60 Aligned_cols=43 Identities=23% Similarity=0.384 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHc---CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 143 SRESILNDILDALR---GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 143 gr~~~~~~l~~~l~---~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|++.+++|.+.+. .....+|+|.|.+|+||||+|+.+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46677777877774 45678999999999999999999998875
No 250
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.3 Score=50.24 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=54.2
Q ss_pred cccccchHHHHHHHHHHHc-------------CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCH
Q 000704 138 HEFIESRESILNDILDALR-------------GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~-------------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1342)
...+.|.+..++++.+... =+..+-|..+|++|.|||.||++|+++-. ..| +.|-. -
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~--a~f-----irvvg---s 223 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVG---S 223 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeecc---H
Confidence 3345566655555555443 13456788999999999999999998765 224 32221 1
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+-+++ .++.. ...+..+++--+++.+-.|.+|.|...
T Consensus 224 efvqk----ylgeg------prmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 224 EFVQK----YLGEG------PRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHHH----HhccC------cHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 11221 22211 122333444444567788888887544
No 251
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.024 Score=64.61 Aligned_cols=95 Identities=22% Similarity=0.253 Sum_probs=62.0
Q ss_pred CcccccchHHHHHHHHHHHcCCC---------eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (1342)
+..|++.-+.+++++++.|+++. .+=|-++|++|.|||-||++|+....+- | |......|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdE--- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDE--- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchhh---
Confidence 33444455678899999998642 3568899999999999999999876643 2 2222222221
Q ss_pred HHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 208 RREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 208 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+.-. ....++..++..-+..-++.|.+|.++..
T Consensus 376 ---m~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 376 ---MFVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred ---hhhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1000 12345666666666678899999998654
No 252
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.057 Score=63.92 Aligned_cols=152 Identities=15% Similarity=0.131 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC--cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT--PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
.-|-|.|..|+|||+||+.+++... +++.-.+.+|+.+.- ...+.+++.+-.-+ .+.+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~-~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEAL-WY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHH-hh
Confidence 4688999999999999999999887 555556667766532 23444444332221 1112 25
Q ss_pred CcEEEEEcCCCCc--------ccccc----cCCCCC-----CCCCCcE--EEEEecchhhhhh----hcCcCccEEecCC
Q 000704 239 KKILVILDDIWTS--------LDLER----TGIPFG-----DVHRGCK--ILVTSRRRDVLVS----EMHCQNNYCVSVL 295 (1342)
Q Consensus 239 k~~LlvlDdv~~~--------~~~~~----l~~~l~-----~~~~gs~--iliTtr~~~v~~~----~~~~~~~~~l~~L 295 (1342)
.+-+|||||+.-. .+|.. +...+. ....+.+ +|.|.....-... ..--+.++++..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 8889999998543 12211 111110 1223444 3444433222111 1112446788888
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCC
Q 000704 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGL 331 (1342)
Q Consensus 296 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~gl 331 (1342)
...+--++++........ ....+...-++.+|+|.
T Consensus 574 ~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEGY 608 (952)
T ss_pred chhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCc
Confidence 888877777665532111 11122233377777773
No 253
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.11 Score=58.73 Aligned_cols=154 Identities=14% Similarity=0.058 Sum_probs=78.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG---------------------RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~---------------------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1342)
...+.++|+.|+||||+|+.+....--. .|-| ..++.-..... + -+ .
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD-~~~~~p~~~~~-~---------~g-~ 88 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPD-FYEITPLSDEP-E---------NG-R 88 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEEecccccc-c---------cc-c
Confidence 3468899999999999999999875311 1111 11221100000 0 00 0
Q ss_pred CCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEecchh-hhhhhcCcCccEE
Q 000704 219 FCEESDSERIMMLCNRLK----REKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTSRRRD-VLVSEMHCQNNYC 291 (1342)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTtr~~~-v~~~~~~~~~~~~ 291 (1342)
....-..+.+.++.+.+. .+++-++|+|++...+ .-..+...+.....+..+|++|.+.. +..........+.
T Consensus 89 ~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~ 168 (325)
T PRK08699 89 KLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMV 168 (325)
T ss_pred cCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhc
Confidence 000012233344444433 1455556668776653 22222222222223455666666644 4432233456789
Q ss_pred ecCCCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHH
Q 000704 292 VSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIA 334 (1342)
Q Consensus 292 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPla 334 (1342)
+.+++.+++.+.+.+. |. ... . ..+..++|-|+.
T Consensus 169 ~~~~~~~~~~~~L~~~-~~---~~~-~----~~l~~~~g~p~~ 202 (325)
T PRK08699 169 LPAPSHEEALAYLRER-GV---AEP-E----ERLAFHSGAPLF 202 (325)
T ss_pred CCCCCHHHHHHHHHhc-CC---CcH-H----HHHHHhCCChhh
Confidence 9999999998888653 21 111 1 123568899964
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.66 E-value=0.068 Score=57.50 Aligned_cols=90 Identities=18% Similarity=0.171 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcC--CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000704 146 SILNDILDALRG--PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1342)
Q Consensus 146 ~~~~~l~~~l~~--~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 223 (1342)
..+..+.+...+ .....+.++|.+|+|||+||..+++..... -..+++++ +.++...+-..... ..
T Consensus 83 ~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~--~~-- 150 (244)
T PRK07952 83 NALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN--SE-- 150 (244)
T ss_pred HHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh--cc--
Confidence 344455554432 233578999999999999999999987632 23555564 44555555444321 11
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 224 DSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
.....+.+.+. +.=+||+||+...
T Consensus 151 --~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 --TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223444453 4558888998654
No 255
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.66 E-value=0.037 Score=71.51 Aligned_cols=106 Identities=18% Similarity=0.227 Sum_probs=58.9
Q ss_pred ccccchHHHHHHHHHHHc-------CC--CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHH
Q 000704 139 EFIESRESILNDILDALR-------GP--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR 209 (1342)
Q Consensus 139 ~~~~gr~~~~~~l~~~l~-------~~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 209 (1342)
..++|.+..++.+.+.+. +. ...++.++|+.|+|||+||+.+++..--. -...+-+..++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccHHH
Confidence 346788888888888775 12 23467799999999999999999865311 12233344443222211111
Q ss_pred HHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 210 EIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 210 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
-++.. ++-...+....+.+.+.+....++++|+++..
T Consensus 587 ----l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 587 ----LIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ----hcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11111 10000011123444554334468899999766
No 256
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.65 E-value=0.047 Score=60.89 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1342)
.-+++-|+|++|+||||||.++...... .-..++||+....++.. .+++++.+.. .....+....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4579999999999999999998876652 23567888776666553 3455544311 112222233332
Q ss_pred HHHhcCCcEEEEEcCCCC
Q 000704 233 NRLKREKKILVILDDIWT 250 (1342)
Q Consensus 233 ~~l~~~k~~LlvlDdv~~ 250 (1342)
..+..+..-+||+|.|..
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345677999999854
No 257
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.62 E-value=0.054 Score=62.51 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=81.0
Q ss_pred ccchHHHHHHHHHHHc-CCCeEE-EEEEcCCCCcHHHHHHHHHHHHhcCC-------------------CcceEEEEEec
Q 000704 141 IESRESILNDILDALR-GPYVYM-IGVYGMAGIGKTTLVKEVARLAKEGR-------------------IFDEVVFAEVS 199 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~-~~~~~v-i~I~G~gG~GKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 199 (1342)
+++-+....++..+.. ..+.+. +-++|+.|+||||+|..+.+..--.. ..+.+..+.-+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4556667777777776 344555 99999999999999999998775221 12344445544
Q ss_pred CCcC---HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEe
Q 000704 200 QTPD---LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS 274 (1342)
Q Consensus 200 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt 274 (1342)
.... ..+..+++.+....... .++.-++|+|+++... .-..+...+-.....+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4443 34444444444332211 2578899999997763 2333333333344567777777
Q ss_pred cc-hhhhhhhcCcCccEEecC
Q 000704 275 RR-RDVLVSEMHCQNNYCVSV 294 (1342)
Q Consensus 275 r~-~~v~~~~~~~~~~~~l~~ 294 (1342)
.. ..+..........+++.+
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 63 333331122334566665
No 258
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.042 Score=64.65 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=50.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..+|+|+|.+|+||||++.++......+.....+..++... .....+.++...+.++...........+....+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 47999999999999999999987765332233455555432 222333444444444443332223333444444443
Q ss_pred CcEEEEEcCCC
Q 000704 239 KKILVILDDIW 249 (1342)
Q Consensus 239 k~~LlvlDdv~ 249 (1342)
+.-+||+|..-
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 45578888864
No 259
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.28 Score=59.01 Aligned_cols=97 Identities=23% Similarity=0.310 Sum_probs=68.4
Q ss_pred CCCcccccchHHHHHHHHHHHc---------CC---CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc
Q 000704 135 NEGHEFIESRESILNDILDALR---------GP---YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP 202 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~l~---------~~---~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 202 (1342)
.....++.|-++.+.+|.+-+. .. +.+=|-.+|++|.|||-+|++|+....- .|++|-..
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP- 739 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP- 739 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH-
Confidence 3445567788888888888764 11 2456889999999999999999987652 35555432
Q ss_pred CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 203 DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 203 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+++..-. | ..++.+.+++++-+..+++.|.+|.+++.
T Consensus 740 ---ELLNMYV---G------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ---ELLNMYV---G------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ---HHHHHHh---c------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 3333222 1 13456777888887789999999998765
No 260
>PRK10867 signal recognition particle protein; Provisional
Probab=95.59 E-value=0.72 Score=54.13 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...+|.++|.+|+||||.|.+++...+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988887665
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.56 E-value=0.17 Score=59.08 Aligned_cols=174 Identities=20% Similarity=0.268 Sum_probs=98.6
Q ss_pred CcccccchHHHHHHHHHHHcC-------------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 137 GHEFIESRESILNDILDALRG-------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
...++.+-++...++...+.. ....=|-.||++|+|||-||++|+|... -+| ++|-..
T Consensus 509 tW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGP-- 579 (802)
T KOG0733|consen 509 TWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGP-- 579 (802)
T ss_pred ChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCH--
Confidence 344455556666665544431 1234578999999999999999999876 334 444332
Q ss_pred HHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc-------c------ccccCCCCCC--CCCCc
Q 000704 204 LKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSL-------D------LERTGIPFGD--VHRGC 268 (1342)
Q Consensus 204 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~-------~------~~~l~~~l~~--~~~gs 268 (1342)
+++.+-. | ..+..+..++++-+...++.|.+|.++... . ...+..-+.. ...|-
T Consensus 580 --ELlNkYV---G------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV 648 (802)
T KOG0733|consen 580 --ELLNKYV---G------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGV 648 (802)
T ss_pred --HHHHHHh---h------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccce
Confidence 2222211 1 122345566777766899999999986541 1 1222222222 23455
Q ss_pred EEEEEecchhhhhhh---cCc-CccEEecCCCHHHHHHHHHHHhCCCC----CCccHHHHHHHHHHHhCCCh
Q 000704 269 KILVTSRRRDVLVSE---MHC-QNNYCVSVLNKEEAWSLFSKVVGNCV----EDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 269 ~iliTtr~~~v~~~~---~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~----~~~~~~~~~~~i~~~c~glP 332 (1342)
-||-.|-..++-+.+ .|. ....-++.-+.+|-.++++....+.. .+-++++||+. .+|.|.-
T Consensus 649 ~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 649 YVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred EEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 566655555443321 222 34567777788888899888875311 23345544433 3555543
No 262
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.54 E-value=0.049 Score=58.89 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCC----CcceEEEEEecCCcCHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRR 209 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~ 209 (1342)
.-.++.|+|.+|.|||++|.+++....... .=..++|++....++..++.+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~ 72 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQ 72 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHH
Confidence 356999999999999999999987654221 015678998877777665543
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.51 E-value=0.053 Score=59.05 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
+..-+.++|.+|+|||.||.++.+... +..+ .+.+++ ..++..++....... ....++.+.+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~~-------~~~~~l~~~l--~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDEG-------RLEEKLLREL--K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhcC-------chHHHHHHHh--h
Confidence 556799999999999999999999987 4334 344553 456777776655431 1112333334 3
Q ss_pred CcEEEEEcCCCCc
Q 000704 239 KKILVILDDIWTS 251 (1342)
Q Consensus 239 k~~LlvlDdv~~~ 251 (1342)
+-=||||||+...
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 5568999998654
No 264
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.51 E-value=0.032 Score=70.13 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=57.9
Q ss_pred cccchHHHHHHHHHHHcC---------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 140 FIESRESILNDILDALRG---------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~---------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.++|.++.++.+.+.+.. .....+-++|+.|+|||++|+.++.... . ..+.+..++......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~---~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I---ELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C---CcEEeechhhccccc----
Confidence 367888888888887751 1245789999999999999999988763 2 223444443222111
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+.+-++.. .+-...+....+.+.+.+....+|+||++...
T Consensus 530 ~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 11112211 11000011112333344345579999999776
No 265
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.49 E-value=0.57 Score=53.95 Aligned_cols=42 Identities=21% Similarity=0.445 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcC---CCeEEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 000704 146 SILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1342)
Q Consensus 146 ~~~~~l~~~l~~---~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 187 (1342)
.-.+.+.+.+.+ ....+|+|.|.=|.||||+.+.+.+..+..
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 345566666663 467899999999999999999999988744
No 266
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.46 E-value=0.052 Score=60.98 Aligned_cols=90 Identities=24% Similarity=0.286 Sum_probs=56.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcC----CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CCh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ESD 224 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~ 224 (1342)
.-+++-|+|.+|+|||+++.+++-..... ..=..++||+....|+.+++.+ ++++++.+... .+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 34689999999999999999877543321 1124789999988888888754 56666544221 011
Q ss_pred H---HHHHHHHHHHhcCCcEEEEEcCCC
Q 000704 225 S---ERIMMLCNRLKREKKILVILDDIW 249 (1342)
Q Consensus 225 ~---~~~~~l~~~l~~~k~~LlvlDdv~ 249 (1342)
. +.+..+...+.+++--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 1 122233333433455678888874
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.40 E-value=0.082 Score=53.68 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=31.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
++.|+|.+|+||||+|+.+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 4789999999999999999988753 345677777765543
No 268
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.39 E-value=0.063 Score=59.93 Aligned_cols=85 Identities=22% Similarity=0.345 Sum_probs=53.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC-----CCChHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC-----EESDSERIMMLCN 233 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~l~~ 233 (1342)
.-+++-|+|++|+||||||.+++..... .-..++||+....++.. .+++++.+.+ .....+.+..+.+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 3568999999999999999998876652 24567899877766653 3444443211 1112222223333
Q ss_pred HH-hcCCcEEEEEcCCCC
Q 000704 234 RL-KREKKILVILDDIWT 250 (1342)
Q Consensus 234 ~l-~~~k~~LlvlDdv~~ 250 (1342)
.+ ..+.--+||+|.|-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 33 345677999999753
No 269
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.39 E-value=0.058 Score=58.23 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1342)
.-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++.+++.
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHHH
Confidence 3579999999999999999999887652 24678899887 56655543
No 270
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.022 Score=54.77 Aligned_cols=31 Identities=35% Similarity=0.448 Sum_probs=25.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcce
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE 192 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~ 192 (1342)
.-|.|.||+|+||||+++.+.+..+.. .|..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK-GYKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc-Ccee
Confidence 468999999999999999999988743 3543
No 271
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.38 E-value=0.11 Score=56.88 Aligned_cols=88 Identities=26% Similarity=0.316 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCC----CcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------CChH-
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------ESDS- 225 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------~~~~- 225 (1342)
.|+=|+|.+|+|||.||.+++-...... .=..++|++-...|+.+++. +|+++.+.+... .+..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 4899999999999999999876654221 12468999988889988875 466665432110 0111
Q ss_pred --HHHHHHHHHHhcCCcEEEEEcCCC
Q 000704 226 --ERIMMLCNRLKREKKILVILDDIW 249 (1342)
Q Consensus 226 --~~~~~l~~~l~~~k~~LlvlDdv~ 249 (1342)
..+..+...+.+++--|||+|.+-
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHhhccccceEEEEecchH
Confidence 112223333333566688888874
No 272
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.37 E-value=0.037 Score=57.07 Aligned_cols=36 Identities=33% Similarity=0.517 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEE
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 196 (1342)
...+|.++|+.|.||||+|+.+++... ..+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 345899999999999999999999886 345555555
No 273
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.092 Score=64.71 Aligned_cols=158 Identities=13% Similarity=0.162 Sum_probs=91.8
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCc----ceEEEEEecCCcCHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF----DEVVFAEVSQTPDLKRIRREIAD 213 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~ 213 (1342)
..-++||+++++++++.|......=-..+|.+|+|||++|.-++.+.-.++-- +..++. + +|..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L-----------D~g~ 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L-----------DLGS 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e-----------cHHH
Confidence 34478999999999999973222223578999999999999998877533221 111111 0 1111
Q ss_pred HhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc--------ccc---cCCCCCCCCCCcEEEEEecchhhhhh
Q 000704 214 QLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD--------LER---TGIPFGDVHRGCKILVTSRRRDVLVS 282 (1342)
Q Consensus 214 ~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~--------~~~---l~~~l~~~~~gs~iliTtr~~~v~~~ 282 (1342)
-..+....-.-++++..+.+.+.+.++..+.+|.+..... .+. ++.++.. +.--.|=.||-++.--..
T Consensus 237 LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~i 315 (786)
T COG0542 237 LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYI 315 (786)
T ss_pred HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHh
Confidence 1122222223445667777777766799999999865411 111 2222221 112235556655432100
Q ss_pred -----hcCcCccEEecCCCHHHHHHHHHHHh
Q 000704 283 -----EMHCQNNYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 283 -----~~~~~~~~~l~~L~~~~~~~lf~~~~ 308 (1342)
.......+.++.-+.+++..+++-..
T Consensus 316 EKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 316 EKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 12345678888888888888887655
No 274
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.35 E-value=0.073 Score=56.75 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1342)
+|+|.|..|+||||+|+.+.........=..+..++...-+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~ 45 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNK 45 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHH
Confidence 589999999999999999998775210112344555554443333
No 275
>PRK09354 recA recombinase A; Provisional
Probab=95.33 E-value=0.072 Score=59.97 Aligned_cols=85 Identities=18% Similarity=0.269 Sum_probs=55.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCC------CCChHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFC------EESDSERIMMLC 232 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~ 232 (1342)
.-+++-|+|+.|+||||||.++..... ..-..++||..-..++.. .+++++.+.. .....+....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 457999999999999999999887665 234678899887777753 3455554321 112222233333
Q ss_pred HHHhcCCcEEEEEcCCCC
Q 000704 233 NRLKREKKILVILDDIWT 250 (1342)
Q Consensus 233 ~~l~~~k~~LlvlDdv~~ 250 (1342)
..+..++--+||+|.|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333345677999999853
No 276
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.32 E-value=0.064 Score=61.52 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=46.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec-CCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS-QTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..++.++|++|+||||+|.+++........+ .+..++.. +.....+.++..++.++..... ......+...+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~---~~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYP---VKDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeee---hHHHHHHHHHHHhC
Confidence 4689999999999999999999765322333 22233322 1222334445555555543321 11233444444333
Q ss_pred CcEEEEEcCC
Q 000704 239 KKILVILDDI 248 (1342)
Q Consensus 239 k~~LlvlDdv 248 (1342)
..=+||+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 3345888843
No 277
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.30 E-value=0.091 Score=57.95 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=32.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHH
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 208 (1342)
....+|+|.|..|+||||+|+.+..-......-..+..++...-....+.+
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l 110 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVL 110 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHH
Confidence 356799999999999999999887655411111234555555444333333
No 278
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.0008 Score=69.72 Aligned_cols=78 Identities=27% Similarity=0.264 Sum_probs=37.1
Q ss_pred CCCCCEEEccCCCCCCCccccCCCCCCEEEccCCCCcccCc--ccCCCCcccEEeccCCCCCCccCcc----ccCCCCCC
Q 000704 557 LPNLESLCLDQCILGDIAIIGNLKNLEILSLCCSDIEQLPR--EIGELTQLKLLDLSNCSKLKVIPPN----VISSLSQL 630 (1342)
Q Consensus 557 L~~Lr~L~L~~~~i~~l~~i~~L~~L~~L~Ls~~~i~~LP~--~i~~L~~L~~L~L~~~~~l~~lp~~----~l~~L~~L 630 (1342)
++.|++|.|+-|.|+.+..+..+++|+.|.|+.|.|..+-+ -+.+|++|+.|-|..|+....-+.+ ++.-|++|
T Consensus 40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnL 119 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNL 119 (388)
T ss_pred cccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccc
Confidence 33344444444444444444444444444444444443321 2455666666666655544333321 24556666
Q ss_pred CEEE
Q 000704 631 EELY 634 (1342)
Q Consensus 631 ~~L~ 634 (1342)
+.|+
T Consensus 120 kKLD 123 (388)
T KOG2123|consen 120 KKLD 123 (388)
T ss_pred hhcc
Confidence 6665
No 279
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.20 E-value=0.1 Score=62.60 Aligned_cols=51 Identities=22% Similarity=0.252 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcC-----CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe
Q 000704 144 RESILNDILDALRG-----PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1342)
Q Consensus 144 r~~~~~~l~~~l~~-----~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1342)
..+.++++..||.+ ...+++.+.|++|+||||.++.+++... |+.+-|.+-
T Consensus 24 hkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred cHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 34567788888762 3357999999999999999999998764 777778743
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.14 E-value=0.099 Score=54.60 Aligned_cols=63 Identities=24% Similarity=0.250 Sum_probs=41.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEE-------EEecCCcCHHHHH--HHHHHHhCCCCCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVF-------AEVSQTPDLKRIR--REIADQLGLNFCE 221 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~w-------v~vs~~~~~~~~~--~~i~~~l~~~~~~ 221 (1342)
....|.++||+|.||||..+.++.+...+..-..++= +....+.++++.. ++..++.+...++
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNG 89 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNG 89 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCc
Confidence 4568899999999999999999998875433222221 1222334666654 4667777665554
No 281
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.12 E-value=0.057 Score=60.97 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=54.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
.-+.++|..|+|||.||..+++....+ . ..++++++. ++...+...-. ..... .....+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~-g-~~V~y~t~~------~l~~~l~~~~~---~~~~~---~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR-G-KSVIYRTAD------ELIEILREIRF---NNDKE---LEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC-C-CeEEEEEHH------HHHHHHHHHHh---ccchh---HHHHHHHhc--cC
Confidence 679999999999999999999987633 2 355666543 34444433211 00001 111133342 34
Q ss_pred EEEEEcCCCCc--cccc--ccCCCCCC-CCCCcEEEEEecc
Q 000704 241 ILVILDDIWTS--LDLE--RTGIPFGD-VHRGCKILVTSRR 276 (1342)
Q Consensus 241 ~LlvlDdv~~~--~~~~--~l~~~l~~-~~~gs~iliTtr~ 276 (1342)
=|||+||+... ..|. .+...+.. ...+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999554 2332 12211111 1224458888864
No 282
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.11 E-value=0.11 Score=56.76 Aligned_cols=123 Identities=20% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHHHc-CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEE---ecCCcCHHHHHHHHHHHhCCC------
Q 000704 149 NDILDALR-GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRREIADQLGLN------ 218 (1342)
Q Consensus 149 ~~l~~~l~-~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~i~~~l~~~------ 218 (1342)
+.++..+. ..+..-++|+|..|.|||||.+.+...... ....+++. |....... +++.....-
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVG 171 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHH----HHHHHhccccccccc
Confidence 34444443 344678999999999999999999977642 22333331 11111122 333222110
Q ss_pred --CCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhh
Q 000704 219 --FCEESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 219 --~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 281 (1342)
.+.-+.......+...+....+-++|+|.+...+.+..+...+. .|..||+||....+..
T Consensus 172 ~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00001111122233333335788999999987766665544442 4778999999776644
No 283
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.07 E-value=0.11 Score=58.96 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=43.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc----CCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE----GRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1342)
.-+++-|+|.+|+|||+|+.+++-.... ...-..++||+....|+++++.+ +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3468889999999999999998754332 11224789999999999888755 56666554
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.05 E-value=0.12 Score=55.63 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.-.++.|.|..|+||||+|.++...... .. ..+++++ ...+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CC-CcEEEEe--CCCCHHHHHHHH
Confidence 3459999999999999998776655431 22 3456665 334566777766
No 285
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.02 E-value=0.011 Score=61.71 Aligned_cols=84 Identities=29% Similarity=0.350 Sum_probs=54.3
Q ss_pred hcCCCCccEEEecCC--CCC-cCCccCCCCCCCCEEEccCCCCCCC---ccccCCCCCCEEEccCCCCcccCc----ccC
Q 000704 531 FAGMPKLRVLVLTRM--KLL-TLPSSFCHLPNLESLCLDQCILGDI---AIIGNLKNLEILSLCCSDIEQLPR----EIG 600 (1342)
Q Consensus 531 f~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~Lr~L~L~~~~i~~l---~~i~~L~~L~~L~Ls~~~i~~LP~----~i~ 600 (1342)
|..+++|+.|.++.| .+. .++-...++++|++|+|++|+|+.+ ....++.+|..|++..|....+-. .+.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 455666777777776 332 3444445557777777777776654 456677778888888776665432 256
Q ss_pred CCCcccEEeccCCC
Q 000704 601 ELTQLKLLDLSNCS 614 (1342)
Q Consensus 601 ~L~~L~~L~L~~~~ 614 (1342)
-+++|.+|+-....
T Consensus 141 ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 141 LLPSLKYLDGCDVD 154 (260)
T ss_pred HhhhhccccccccC
Confidence 67888888765544
No 286
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.00 E-value=0.047 Score=64.98 Aligned_cols=76 Identities=21% Similarity=0.334 Sum_probs=54.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
+.-++.-++|++|+||||||+-|+++.- | .++=|+.|+.-+...+-..|...+....... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 3467999999999999999999998754 4 3456788888777777777665553321110 12
Q ss_pred CCcEEEEEcCCCCc
Q 000704 238 EKKILVILDDIWTS 251 (1342)
Q Consensus 238 ~k~~LlvlDdv~~~ 251 (1342)
+++.=+|+|.++-.
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57778899988654
No 287
>PRK04296 thymidine kinase; Provisional
Probab=94.98 E-value=0.034 Score=57.89 Aligned_cols=110 Identities=17% Similarity=0.140 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC---CChHHHHHHHHHHHhc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE---ESDSERIMMLCNRLKR 237 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~ 237 (1342)
.++.|+|..|.||||+|.....+.... -..++.+. ..++.+.....++++++..... ....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 478899999999999999999887532 22333331 2222222233455555543322 111222222222 22
Q ss_pred CCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecchh
Q 000704 238 EKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1342)
Q Consensus 238 ~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~~~ 278 (1342)
++.-+||+|.+.-. ++..++...+ ...|..||+|.++..
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 35558999998542 2122222221 235788999998854
No 288
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.98 E-value=0.063 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
||.|+|++|+||||+|+.+.....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999988653
No 289
>PRK06547 hypothetical protein; Provisional
Probab=94.98 E-value=0.035 Score=56.41 Aligned_cols=35 Identities=31% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 151 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+...+......+|+|.|+.|.||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444566788999999999999999999998743
No 290
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.95 E-value=0.11 Score=54.42 Aligned_cols=24 Identities=46% Similarity=0.760 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
||+|.|.+|+||||+|+.+.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999886
No 291
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.95 E-value=0.093 Score=53.90 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++.++|++|.||||+++.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998776
No 292
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.18 Score=58.08 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=54.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCC--CcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR--IFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRL 235 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l 235 (1342)
..++|.++|+.|+||||.+.+++....... +=..+..++.... ....+-++..++.++...........+......+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999999998765321 1234555555432 2233446666666666543333333333333333
Q ss_pred hcCCcEEEEEcCCCC
Q 000704 236 KREKKILVILDDIWT 250 (1342)
Q Consensus 236 ~~~k~~LlvlDdv~~ 250 (1342)
.+.-+|++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456788898743
No 293
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.075 Score=52.97 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
-.++.|.|++|+|||||+++++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999875
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.87 E-value=0.031 Score=65.88 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=40.8
Q ss_pred cccchHHHHHHHHHHHc------CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 140 FIESRESILNDILDALR------GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~------~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.++|.++.++++++.|. +.+.+++.++|+.|+||||||+.+.+-.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 57899999999999883 45668999999999999999999998765
No 295
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.36 Score=49.69 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=72.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..+=+.++|++|.|||-||+.|++.- .+-|+.||.. +-+++.|.+ ....+.+++---.+.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---elvqk~ige----------gsrmvrelfvmareh 239 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---ELVQKYIGE----------GSRMVRELFVMAREH 239 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH---HHHHHHhhh----------hHHHHHHHHHHHHhc
Confidence 45678899999999999999998754 3456777653 222222221 111223333333335
Q ss_pred CcEEEEEcCCCCcc----------c---cc---ccCCCCC--CCCCCcEEEEEecchhhhhh----hcCcCccEEecCCC
Q 000704 239 KKILVILDDIWTSL----------D---LE---RTGIPFG--DVHRGCKILVTSRRRDVLVS----EMHCQNNYCVSVLN 296 (1342)
Q Consensus 239 k~~LlvlDdv~~~~----------~---~~---~l~~~l~--~~~~gs~iliTtr~~~v~~~----~~~~~~~~~l~~L~ 296 (1342)
.+..|..|.+.+.. + -. ++...+. ...+.-|||..|..-++.+. .....+.++..+-+
T Consensus 240 apsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~ 319 (404)
T KOG0728|consen 240 APSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCC
Confidence 67777888775541 0 00 0111111 12345678887765555443 11224567777777
Q ss_pred HHHHHHHHHHHh
Q 000704 297 KEEAWSLFSKVV 308 (1342)
Q Consensus 297 ~~~~~~lf~~~~ 308 (1342)
++.-.++++-+.
T Consensus 320 e~ar~~ilkihs 331 (404)
T KOG0728|consen 320 EEARLDILKIHS 331 (404)
T ss_pred HHHHHHHHHHhh
Confidence 776667766554
No 296
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.82 E-value=0.13 Score=64.35 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcE
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKI 241 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~ 241 (1342)
-|.++|++|.||||+|+.+.+...+ .| +.++.. ++.. + ..+ .....+..+........+.
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~--~f-----~~is~~----~~~~-~--~~g------~~~~~~~~~f~~a~~~~P~ 246 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKV--PF-----FTISGS----DFVE-M--FVG------VGASRVRDMFEQAKKAAPC 246 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCC--CE-----EEEehH----HhHH-h--hhc------ccHHHHHHHHHHHHhcCCc
Confidence 4899999999999999999887642 23 222211 1111 0 000 0112333344444445788
Q ss_pred EEEEcCCCCccc------------c----cccCCCCCC--CCCCcEEEEEecchhhhhhhc---C-cCccEEecCCCHHH
Q 000704 242 LVILDDIWTSLD------------L----ERTGIPFGD--VHRGCKILVTSRRRDVLVSEM---H-CQNNYCVSVLNKEE 299 (1342)
Q Consensus 242 LlvlDdv~~~~~------------~----~~l~~~l~~--~~~gs~iliTtr~~~v~~~~~---~-~~~~~~l~~L~~~~ 299 (1342)
+|++|+++.... + ..+...+.. ...+.-||.||...+..+.+. + -.+.+.+...+.++
T Consensus 247 IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~ 326 (644)
T PRK10733 247 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 326 (644)
T ss_pred EEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHH
Confidence 999999865410 1 111111111 123445555776665443211 1 24567788888888
Q ss_pred HHHHHHHHhC
Q 000704 300 AWSLFSKVVG 309 (1342)
Q Consensus 300 ~~~lf~~~~~ 309 (1342)
-.++++.+..
T Consensus 327 R~~Il~~~~~ 336 (644)
T PRK10733 327 REQILKVHMR 336 (644)
T ss_pred HHHHHHHHhh
Confidence 8888888774
No 297
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.82 E-value=0.15 Score=57.50 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=55.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
+.++++++|+.|+||||++..++.....+. ..+.+|+.... ....+-++..++.++.......+...+....+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 467999999999999999999987764332 34666765432 234556666677666543322333334444444431
Q ss_pred -CCcEEEEEcCCCC
Q 000704 238 -EKKILVILDDIWT 250 (1342)
Q Consensus 238 -~k~~LlvlDdv~~ 250 (1342)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 2445777887644
No 298
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.81 E-value=0.087 Score=55.39 Aligned_cols=85 Identities=27% Similarity=0.502 Sum_probs=53.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH-----
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER----- 227 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 227 (1342)
.-++|+|.+|+|||+|++.+.+... -+.++++.+.+.. .+.++.+++...-..+ ...++....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 3689999999999999999998874 3455888887664 5667766664431111 111111111
Q ss_pred -HHHHHHHHh-cCCcEEEEEcCCC
Q 000704 228 -IMMLCNRLK-REKKILVILDDIW 249 (1342)
Q Consensus 228 -~~~l~~~l~-~~k~~LlvlDdv~ 249 (1342)
.-.+.+++. ++|++|+++||+-
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHH
T ss_pred cchhhhHHHhhcCCceeehhhhhH
Confidence 111222332 4899999999983
No 299
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.011 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=12.9
Q ss_pred CCCEEEccCCCCcccCcccCC
Q 000704 581 NLEILSLCCSDIEQLPREIGE 601 (1342)
Q Consensus 581 ~L~~L~Ls~~~i~~LP~~i~~ 601 (1342)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 456666666666666665554
No 300
>PRK07667 uridine kinase; Provisional
Probab=94.79 E-value=0.044 Score=57.29 Aligned_cols=37 Identities=24% Similarity=0.550 Sum_probs=29.7
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 149 ~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+.+.+.+. .....+|+|-|.+|.||||+|+.+.....
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44555554 34557999999999999999999998875
No 301
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.78 E-value=0.086 Score=58.72 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=25.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
....++|||++|.|||.+|+.+++....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 4578999999999999999999998763
No 302
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.77 E-value=0.31 Score=57.13 Aligned_cols=27 Identities=33% Similarity=0.333 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...++.++|.+|+||||.|.+++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 357999999999999999999988764
No 303
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.76 E-value=0.11 Score=58.48 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=41.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcC----CCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
.-.++.|+|.+|+||||||..++...... ..-..++|++....++.+++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 45799999999999999999987643311 11236799998887887764 445565554
No 304
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.75 E-value=0.18 Score=54.68 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.-+++.|.|.+|+|||++|.++..... +.-..++||+..+ +.+++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHHH
Confidence 457999999999999999999765543 2245778888755 555665554
No 305
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.72 E-value=0.74 Score=51.29 Aligned_cols=166 Identities=8% Similarity=0.004 Sum_probs=93.5
Q ss_pred HHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHH--------hcCCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCC
Q 000704 149 NDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLA--------KEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 149 ~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 218 (1342)
+.+...+...++ .+.-++|..|.||+++|+.+.+.. ....|-+...++.. .....+.++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 344445544444 566799999999999999999886 21222223333321 2223333332 333332211
Q ss_pred CCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCcc--cccccCCCCCCCCCCcEEEEEe-cchhhhhhhcCcCccEEecCC
Q 000704 219 FCEESDSERIMMLCNRLKREKKILVILDDIWTSL--DLERTGIPFGDVHRGCKILVTS-RRRDVLVSEMHCQNNYCVSVL 295 (1342)
Q Consensus 219 ~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~--~~~~l~~~l~~~~~gs~iliTt-r~~~v~~~~~~~~~~~~l~~L 295 (1342)
. ...+++-++|+|++.... ..+.+...+-....++.+|++| ....+..........+++.++
T Consensus 85 ~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 85 S---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred C---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 1 011577888999986653 3444544454445667777655 444444322344678999999
Q ss_pred CHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHH
Q 000704 296 NKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILT 337 (1342)
Q Consensus 296 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~ 337 (1342)
++++..+.+... + . + ++.++.++...+|.=-|+..
T Consensus 150 ~~~~l~~~l~~~-~--~-~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 150 DQQKILAKLLSK-N--K-E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CHHHHHHHHHHc-C--C-C---hhHHHHHHHHcCCHHHHHHH
Confidence 999988777653 2 1 1 23356666666663344444
No 306
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.33 Score=59.35 Aligned_cols=132 Identities=19% Similarity=0.254 Sum_probs=75.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
..+.+-++|++|.|||.||+++++... .+|-.+. .. +++ . .+.++ ....+..++..-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~fi~v~-----~~----~l~----s----k~vGe-sek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRFISVK-----GS----ELL----S----KWVGE-SEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeEEEee-----CH----HHh----c----cccch-HHHHHHHHHHHHHcC
Confidence 456899999999999999999999654 3343322 11 111 1 00111 123344445444457
Q ss_pred CcEEEEEcCCCCccccc-------------ccCCCCCCCC--CCcEEEEEecchhhhhhhc----CcCccEEecCCCHHH
Q 000704 239 KKILVILDDIWTSLDLE-------------RTGIPFGDVH--RGCKILVTSRRRDVLVSEM----HCQNNYCVSVLNKEE 299 (1342)
Q Consensus 239 k~~LlvlDdv~~~~~~~-------------~l~~~l~~~~--~gs~iliTtr~~~v~~~~~----~~~~~~~l~~L~~~~ 299 (1342)
.+..|.+|++.....+. .+...+.... .+-.||-||-.....+.++ .-...+.+..-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 89999999986653222 1111222112 2323444444433322111 124578888999999
Q ss_pred HHHHHHHHhCC
Q 000704 300 AWSLFSKVVGN 310 (1342)
Q Consensus 300 ~~~lf~~~~~~ 310 (1342)
..+.|+.+..+
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998853
No 307
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.69 E-value=0.099 Score=61.52 Aligned_cols=86 Identities=15% Similarity=0.163 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREK 239 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k 239 (1342)
+++.++|++|+||||++.+++........-..+..|+....- ...+-++...+.++..................+. .
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~--~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR--D 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--C
Confidence 589999999999999999988766411222455666654311 1223344444445544322222222333333332 4
Q ss_pred cEEEEEcCC
Q 000704 240 KILVILDDI 248 (1342)
Q Consensus 240 ~~LlvlDdv 248 (1342)
.=+||+|..
T Consensus 300 ~DlVlIDt~ 308 (424)
T PRK05703 300 CDVILIDTA 308 (424)
T ss_pred CCEEEEeCC
Confidence 567888975
No 308
>PRK14974 cell division protein FtsY; Provisional
Probab=94.68 E-value=0.22 Score=56.33 Aligned_cols=89 Identities=25% Similarity=0.246 Sum_probs=50.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCC----CChHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCE----ESDSERIMMLC 232 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~----~~~~~~~~~l~ 232 (1342)
+..+|.++|+.|+||||.+.+++..... ..+ .++.+.. +.+ ...+-++..+..++..... .+....+....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4679999999999999999999887763 334 3333432 222 2334456667777654321 11112222222
Q ss_pred HHHh-cCCcEEEEEcCCCCc
Q 000704 233 NRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 233 ~~l~-~~k~~LlvlDdv~~~ 251 (1342)
+... ++.. +|++|.....
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 2222 2333 8888987543
No 309
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.66 E-value=0.0042 Score=61.95 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=21.7
Q ss_pred CCccchhhcccceeeeecccCcccc--CCCCcccCcccEEEEecCCCCccc
Q 000704 1171 GFKLDSVVENLEMLEVWWCDNLVNL--VPSSPSFRNLITLEVWYCKGLKNL 1219 (1342)
Q Consensus 1171 ~~~~~~~l~~L~~L~i~~C~~l~~l--~~~~~~l~sL~~L~i~~C~~l~~l 1219 (1342)
+...+..+++++.|.+.+|..+.+- --..+-.++|+.|+|++|++|++-
T Consensus 117 Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~ 167 (221)
T KOG3864|consen 117 GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG 167 (221)
T ss_pred HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh
Confidence 3344444555555555555544321 000112345555555555555443
No 310
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.65 E-value=1.9 Score=49.20 Aligned_cols=59 Identities=24% Similarity=0.348 Sum_probs=39.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe-cCCcCHHHHHHHHHHHhCCCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV-SQTPDLKRIRREIADQLGLNF 219 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~ 219 (1342)
...||-.||.-|.||||-|-++++..+. +.+.. .-|+. -..+-.-+-++.++++.+.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk-~~~kv-llVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKK-KGKKV-LLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHH-cCCce-EEEecccCChHHHHHHHHHHHHcCCce
Confidence 3579999999999999999999999874 33322 22222 223345556667777776553
No 311
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.62 E-value=0.28 Score=53.28 Aligned_cols=165 Identities=19% Similarity=0.205 Sum_probs=90.4
Q ss_pred ccchHHHHHHHHHHHc----CCCeEEEEEEcCCCCcHHHHHHHHHHHHh-cCCCcceEEEEEecCCcC-HHHHHHHHHHH
Q 000704 141 IESRESILNDILDALR----GPYVYMIGVYGMAGIGKTTLVKEVARLAK-EGRIFDEVVFAEVSQTPD-LKRIRREIADQ 214 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~----~~~~~vi~I~G~gG~GKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~ 214 (1342)
++|-.++..++-.|+. -.+..-+.|+|+.|.|||+|...+..+.+ .+.+| +-|......- -+-.++.|..+
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHHHHH
Confidence 5566666666666665 23455688999999999999988887722 22233 3333333322 22345555555
Q ss_pred hCCCCCC-----CChHHHHHHHHHHHhc-----CCcEEEEEcCCCCccc-------ccccCCCCCCCCCCcEEEEEecch
Q 000704 215 LGLNFCE-----ESDSERIMMLCNRLKR-----EKKILVILDDIWTSLD-------LERTGIPFGDVHRGCKILVTSRRR 277 (1342)
Q Consensus 215 l~~~~~~-----~~~~~~~~~l~~~l~~-----~k~~LlvlDdv~~~~~-------~~~l~~~l~~~~~gs~iliTtr~~ 277 (1342)
+..+... .+-.+....+...|+. +-++..|+|.++--.. +.-+...-....+-+-|-+|||-.
T Consensus 103 l~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld 182 (408)
T KOG2228|consen 103 LALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLD 182 (408)
T ss_pred HHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecccc
Confidence 5332211 1233455666666654 2457888887643211 111111111234567788899964
Q ss_pred hhhhh--hcC---cCc-cEEecCCCHHHHHHHHHHHh
Q 000704 278 DVLVS--EMH---CQN-NYCVSVLNKEEAWSLFSKVV 308 (1342)
Q Consensus 278 ~v~~~--~~~---~~~-~~~l~~L~~~~~~~lf~~~~ 308 (1342)
....- .+. ..+ ++-++.++-+|...++++..
T Consensus 183 ~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 183 ILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33211 111 122 45556677778877777765
No 312
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.31 Score=53.89 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.-+-|..+|++|.|||-||++|+....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 346788999999999999999999876
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.60 E-value=0.11 Score=53.71 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+++|+|..|.|||||++.+.....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC
Confidence 5899999999999999999987654
No 314
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.60 E-value=0.16 Score=57.73 Aligned_cols=58 Identities=24% Similarity=0.330 Sum_probs=42.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCC----CcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGR----IFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
.-.++-|+|.+|+||||+|.+++....... .=..++||+....++.+++.+ +++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 357899999999999999999987654211 113789999988888877654 4555543
No 315
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.60 E-value=0.12 Score=59.46 Aligned_cols=85 Identities=26% Similarity=0.282 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1342)
-.++.|.|.+|+|||||+.+++...... -..++|++..+ +...+ +.-++.++...... .....++.+.+.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4699999999999999999999876532 24677776543 33333 22244555432211 011223445555554
Q ss_pred CCcEEEEEcCCC
Q 000704 238 EKKILVILDDIW 249 (1342)
Q Consensus 238 ~k~~LlvlDdv~ 249 (1342)
.+.-+||+|.+.
T Consensus 157 ~~~~lVVIDSIq 168 (372)
T cd01121 157 LKPDLVIIDSIQ 168 (372)
T ss_pred cCCcEEEEcchH
Confidence 577788999874
No 316
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.58 E-value=0.065 Score=55.18 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLK 205 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 205 (1342)
+|+|+|-||+||||+|..+......++.|+. .=|....+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V-LvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV-LVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE-EEEeCCCCCChH
Confidence 6899999999999999997777664544443 334555555544
No 317
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.57 E-value=0.12 Score=58.54 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=43.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcC----CCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1342)
.-.++-|+|.+|+|||++|..++-..... ..-..++||+....|+.+++. +|++.++.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCCC
Confidence 35789999999999999999888544311 112378999999999888864 566766543
No 318
>PRK05439 pantothenate kinase; Provisional
Probab=94.56 E-value=0.23 Score=55.23 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=45.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC--CCCCCCChHHHHHHHHHHH
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG--LNFCEESDSERIMMLCNRL 235 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~l~~~l 235 (1342)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...-+...+.+..- .+. ...++.-+.+........+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~--~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER--GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh--hccccCCCcccccHHHHHHHHHHH
Confidence 456799999999999999999998865421111234445555444333333211 111 1122222344555666666
Q ss_pred hcCCc
Q 000704 236 KREKK 240 (1342)
Q Consensus 236 ~~~k~ 240 (1342)
+.++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 65554
No 319
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.55 E-value=0.14 Score=54.98 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=32.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
.-.++.|.|.+|+||||+|.+++..... .=..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~--~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG--QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCCCCH
Confidence 4579999999999999999999877642 234677887655543
No 320
>PTZ00035 Rad51 protein; Provisional
Probab=94.51 E-value=0.19 Score=57.28 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=41.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcC----CCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEG----RIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
.-.++.|+|..|+|||||+..++-..... ..=..++|++....++.+++ .++++.++.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 35799999999999999999987654411 11235679988777777774 445666554
No 321
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.13 Score=49.64 Aligned_cols=44 Identities=32% Similarity=0.480 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 218 (1342)
+|.|-|++|.||||+|+.+.++..-. .| +.-.+.++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999999987522 11 2336778888877765
No 322
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.49 E-value=0.31 Score=55.15 Aligned_cols=100 Identities=17% Similarity=0.166 Sum_probs=56.6
Q ss_pred HHHHHHHHcCC----CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCC
Q 000704 148 LNDILDALRGP----YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEE 222 (1342)
Q Consensus 148 ~~~l~~~l~~~----~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~ 222 (1342)
...+..++.++ +-+||++||+.|+||||-..+++.+..-...=..+..|+... .....+-++..++-++.+....
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv 266 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVV 266 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEe
Confidence 33444444433 368999999999999875555444443223334566676543 2345566666777777765544
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCCC
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDIW 249 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv~ 249 (1342)
........-...+. +. =+|.+|-+.
T Consensus 267 ~~~~el~~ai~~l~-~~-d~ILVDTaG 291 (407)
T COG1419 267 YSPKELAEAIEALR-DC-DVILVDTAG 291 (407)
T ss_pred cCHHHHHHHHHHhh-cC-CEEEEeCCC
Confidence 44444444444443 23 345556553
No 323
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.46 E-value=0.29 Score=50.82 Aligned_cols=94 Identities=15% Similarity=0.214 Sum_probs=57.4
Q ss_pred cccccchHHHHHHHHHHHcC-------------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCH
Q 000704 138 HEFIESRESILNDILDALRG-------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDL 204 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 204 (1342)
...+-|-++.++++.+...- +..+-|..+|++|.|||-+|++|+|+-. ..|-.++ ..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--acfirvi--------gs 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--ACFIRVI--------GS 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ceEEeeh--------hH
Confidence 44566778888887766541 2345688999999999999999998754 2232222 11
Q ss_pred HHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 205 KRIRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 205 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
+-+++.+.+ ....+.++++--+..|-++|.+|.+...
T Consensus 246 elvqkyvge----------garmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 246 ELVQKYVGE----------GARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred HHHHHHhhh----------hHHHHHHHHHHhcccceEEEEeeccccc
Confidence 222222211 1223344454444467899999987543
No 324
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.44 E-value=0.034 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
+|+|.|..|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 325
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.43 E-value=0.18 Score=57.41 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCC----cceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRI----FDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
.-.++-|+|.+|+|||++|.+++-....... =..++||+....+++.++.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 3578999999999999999999876542211 14789999988888877654 4455543
No 326
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.085 Score=56.58 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcC--CCcceEEEEEe
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG--RIFDEVVFAEV 198 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~--~~F~~~~wv~v 198 (1342)
-++|-++|++|.|||+|.++++++..++ +.+....-+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 4789999999999999999999998754 33433333433
No 327
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.39 E-value=0.2 Score=51.68 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCcccccchHHHHHHHHHH----HcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 136 EGHEFIESRESILNDILDA----LRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 136 ~~~~~~~gr~~~~~~l~~~----l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.+...++|-+..++.+++- +..-...-|-.||.-|+||++|++++.+....+ .-. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~--glr--LVEV~k~---------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE--GLR--LVEVDKE---------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc--CCe--EEEEcHH----------
Confidence 3444566766666666543 334455678999999999999999999987632 222 2333221
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHh-cCCcEEEEEcCCCCc---ccccccCCCCC
Q 000704 212 ADQLGLNFCEESDSERIMMLCNRLK-REKKILVILDDIWTS---LDLERTGIPFG 262 (1342)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~k~~LlvlDdv~~~---~~~~~l~~~l~ 262 (1342)
+....-.+.+.|+ ...||.|..||..-+ +.+..++..+.
T Consensus 123 ------------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 123 ------------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred ------------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 1112223344443 258999999998544 34666666654
No 328
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.37 E-value=0.26 Score=53.40 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=58.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh--cCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH----
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK--EGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE---- 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 226 (1342)
..++|.|-.|+|||||+..+.++.. .+.+-+.++++-+.+.. ++.++..++.+.=..+. ..++...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4689999999999999999987754 12235778899888765 57777777765422110 0111111
Q ss_pred --HHHHHHHHHhc--CCcEEEEEcCCCCc
Q 000704 227 --RIMMLCNRLKR--EKKILVILDDIWTS 251 (1342)
Q Consensus 227 --~~~~l~~~l~~--~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++.. ++++|+++||+-..
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 12223444442 69999999998544
No 329
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.36 E-value=0.062 Score=56.39 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHH---HHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRR---EIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~---~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
.+|.|+|+.|.||||+++.+...... .....+++- ..+. +.... .+..+-.. ........+.+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~-e~~~--E~~~~~~~~~i~q~~v---g~~~~~~~~~i~~aLr- 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTI-EDPI--EFVHESKRSLINQREV---GLDTLSFENALKAALR- 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEE-cCCc--cccccCccceeeeccc---CCCccCHHHHHHHHhc-
Confidence 47899999999999999988876642 233344432 1111 11000 01111000 0011112233344444
Q ss_pred CCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhh
Q 000704 238 EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 238 ~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 281 (1342)
...=.+++|++.+.+....+... ...|-.|+.|+...++..
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 45668999999876554432222 124556787877665543
No 330
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.35 E-value=0.034 Score=53.86 Aligned_cols=22 Identities=50% Similarity=0.783 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000704 163 IGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
|.|.|..|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 331
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.32 E-value=0.18 Score=59.61 Aligned_cols=59 Identities=19% Similarity=0.146 Sum_probs=38.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~ 218 (1342)
-.|++++|+.|+||||.+.+++.....+..-..+..|+... .....+-++..++..+..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 36999999999999999999998775333222445555432 223445555556666554
No 332
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.24 Score=57.64 Aligned_cols=87 Identities=21% Similarity=0.242 Sum_probs=48.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
-.+|+++|..|+||||++..+..........+.+.+++... .....+-+...++.++..................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 46999999999999999999887643222233444444332 223344455556666554332222222233333332
Q ss_pred CcEEEEEcCC
Q 000704 239 KKILVILDDI 248 (1342)
Q Consensus 239 k~~LlvlDdv 248 (1342)
..-++++|..
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3345666664
No 333
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.30 E-value=0.054 Score=57.46 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARL 183 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~ 183 (1342)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999853
No 334
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.26 E-value=0.26 Score=53.74 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=56.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHH-hCCCC-CCCChHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ-LGLNF-CEESDSERIMMLCNRLK 236 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~-~~~~~~~~~~~l~~~l~ 236 (1342)
.-+++=|+|+.|.||||+|.+++-... ..-..++|++--..++++++.. ++.. +..-. ......+...++.+.+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999887665 3344889999998898887654 4443 22111 11122222223333322
Q ss_pred c---CCcEEEEEcCCCC
Q 000704 237 R---EKKILVILDDIWT 250 (1342)
Q Consensus 237 ~---~k~~LlvlDdv~~ 250 (1342)
+ .+--|+|+|.|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 1 2467889998854
No 335
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.25 E-value=0.29 Score=53.91 Aligned_cols=39 Identities=28% Similarity=0.322 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1342)
+.++|.++|++|+||||.+.+++...... . ..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCC
Confidence 45799999999999999999999877522 2 355556544
No 336
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.23 E-value=0.24 Score=51.99 Aligned_cols=49 Identities=29% Similarity=0.443 Sum_probs=32.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--------ceEEEEEecCCcCHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIF--------DEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.++.|+|.+|+||||++.++.........| ..++|++.... ..++.+.+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl 89 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRL 89 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHH
Confidence 488999999999999999999887754444 25677766554 33444433
No 337
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.04 Score=56.03 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999886
No 338
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.16 E-value=0.025 Score=35.01 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=16.0
Q ss_pred CccEEEecCCCCCcCCccCCCC
Q 000704 536 KLRVLVLTRMKLLTLPSSFCHL 557 (1342)
Q Consensus 536 ~Lr~L~L~~~~i~~lp~~i~~L 557 (1342)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4778888888888888776653
No 339
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.2 Score=62.11 Aligned_cols=88 Identities=19% Similarity=0.214 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
-+||+++|+.|+||||.+.++.......+.-..+..++... .....+-++...+.++.......+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 46999999999999999999998764222223455555432 223556667777777765443333333444445553 3
Q ss_pred CcEEEEEcCCC
Q 000704 239 KKILVILDDIW 249 (1342)
Q Consensus 239 k~~LlvlDdv~ 249 (1342)
+ =+|++|-.-
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 477888765
No 340
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.13 E-value=0.046 Score=58.19 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
.+..+|+|+|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 341
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.13 E-value=0.049 Score=57.80 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
....+|+|+|++|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998764
No 342
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.11 E-value=0.051 Score=56.12 Aligned_cols=27 Identities=41% Similarity=0.575 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++.+|+|.|.+|.||||+|+.++....
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999999876
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.035 Score=55.44 Aligned_cols=25 Identities=40% Similarity=0.533 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+.|.+.|.+|+||||+|+++++-.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 4678899999999999999998776
No 344
>PRK04328 hypothetical protein; Provisional
Probab=94.08 E-value=0.22 Score=54.33 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=36.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
.-+++.|.|.+|.|||+||.++..... +.-..++|++..+ +.+++.+. +++++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee--~~~~i~~~-~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEE--HPVQVRRN-MRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeC--CHHHHHHH-HHHcC
Confidence 457999999999999999999766543 2245678888766 34444333 34443
No 345
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.07 E-value=0.08 Score=52.15 Aligned_cols=27 Identities=33% Similarity=0.523 Sum_probs=24.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~ 187 (1342)
.||.|.|.+|.||||||+.+.+.....
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999998743
No 346
>PRK08233 hypothetical protein; Provisional
Probab=94.06 E-value=0.045 Score=56.89 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..+|+|.|.+|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998754
No 347
>PTZ00301 uridine kinase; Provisional
Probab=94.04 E-value=0.05 Score=57.20 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..+|+|.|.+|.||||+|+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 348
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.99 E-value=0.16 Score=50.18 Aligned_cols=26 Identities=38% Similarity=0.457 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.|||||++.+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35899999999999999999987653
No 349
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.98 E-value=0.12 Score=50.91 Aligned_cols=43 Identities=28% Similarity=0.336 Sum_probs=32.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
|.++|..|+|||+||+.+++... ....-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 67999999999999999998873 12334677887888777643
No 350
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.97 E-value=0.12 Score=49.92 Aligned_cols=101 Identities=19% Similarity=0.325 Sum_probs=35.0
Q ss_pred hhcCCCCccEEEecCCCCCcCC-ccCCCCCCCCEEEccCCCCCCC--ccccCCCCCCEEEccCCCCcccCcc-cCCCCcc
Q 000704 530 FFAGMPKLRVLVLTRMKLLTLP-SSFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCCSDIEQLPRE-IGELTQL 605 (1342)
Q Consensus 530 ~f~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~Ls~~~i~~LP~~-i~~L~~L 605 (1342)
.|.++.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.++.+|+.+.+.. .+..++.. +..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344444444444442 233332 22344444444444442 3332 2344444455555533 33333322 3445555
Q ss_pred cEEeccCCCCCCccCccccCCCCCCCEEEcc
Q 000704 606 KLLDLSNCSKLKVIPPNVISSLSQLEELYLG 636 (1342)
Q Consensus 606 ~~L~L~~~~~l~~lp~~~l~~L~~L~~L~l~ 636 (1342)
+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55555431 344444444444 55555543
No 351
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.96 E-value=0.17 Score=48.96 Aligned_cols=115 Identities=19% Similarity=0.334 Sum_probs=63.7
Q ss_pred CCCCccEEEccCCCCCCCCChhhhcCCCCccEEEecCCCCCcCCc-cCCCCCCCCEEEccCCCCCCC--ccccCCCCCCE
Q 000704 508 EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEI 584 (1342)
Q Consensus 508 ~~~~Lr~L~l~~~~~~~~~~~~~f~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~ 584 (1342)
.+++|+.+.+... ...++...|.+++.|+.+.+.++ +..++. .+.++..|+.+.+.. .+..+ ..+..+.+|+.
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp T-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred CCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 5678888887642 35677778899989999999875 666653 577887899999976 44333 56778899999
Q ss_pred EEccCCCCcccCcc-cCCCCcccEEeccCCCCCCccCccccCCCCCC
Q 000704 585 LSLCCSDIEQLPRE-IGELTQLKLLDLSNCSKLKVIPPNVISSLSQL 630 (1342)
Q Consensus 585 L~Ls~~~i~~LP~~-i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L 630 (1342)
+++..+ +..++.. +.+. +|+.+.+.. .+..++.+.+.+.++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 999765 6666544 6676 888888765 3667777767666655
No 352
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.94 E-value=0.086 Score=51.48 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
++|.|+|..|+|||||++.+.+.... +.+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR-RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH-cCCceEEEEEccC
Confidence 58999999999999999999999873 4566555555443
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.89 E-value=0.16 Score=51.87 Aligned_cols=119 Identities=23% Similarity=0.278 Sum_probs=60.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh-c--CC---Ccc--eEEEEEecCCcCHHHHHHHHHHHhCCCC---CCC----Ch
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK-E--GR---IFD--EVVFAEVSQTPDLKRIRREIADQLGLNF---CEE----SD 224 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~-~--~~---~F~--~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~----~~ 224 (1342)
-.+++|+|+.|+|||||.+.+..+.- + .. .|. .+.|+ .+ .+.++.++... ... +.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 35899999999999999999864211 0 00 111 12232 22 34556665432 110 11
Q ss_pred H-HHHHHHHHHHhcCC--cEEEEEcCCCCccc---ccccCCCCCC-CCCCcEEEEEecchhhhhhhcCcCccEEe
Q 000704 225 S-ERIMMLCNRLKREK--KILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLVSEMHCQNNYCV 292 (1342)
Q Consensus 225 ~-~~~~~l~~~l~~~k--~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iliTtr~~~v~~~~~~~~~~~~l 292 (1342)
. ..--.+.+.+. .+ .-++++|+--..-+ .+.+...+.. ...|..||++|.+..... . +.+.+.+
T Consensus 91 Gq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~--~-~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS--S-ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH--h-CCEEEEE
Confidence 1 11122334444 45 67888998654421 1222222211 124667889998877644 2 3445554
No 354
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.88 E-value=0.31 Score=56.92 Aligned_cols=90 Identities=19% Similarity=0.358 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHH------
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSE------ 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 226 (1342)
.-++|.|.+|+|||+|+.++...... .+-+.++|+-+.+.. .+.++.+++...-... ...++...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999999887642 334788888887765 4667777765432111 00111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. +++++|+++||+-..
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecChHHH
Confidence 1223445554 379999999998544
No 355
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.85 E-value=0.28 Score=57.59 Aligned_cols=89 Identities=22% Similarity=0.349 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC------C-CCChHH------
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF------C-EESDSE------ 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~-~~~~~~------ 226 (1342)
.-++|+|.+|+|||||+.++.+..... +-+.++++-+.+.. .+.++..++...-.... . .++...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 468999999999999999998877633 56788888887665 46677776654322110 0 111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEcCCCC
Q 000704 227 RIMMLCNRLK--REKKILVILDDIWT 250 (1342)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlvlDdv~~ 250 (1342)
.+-.+.+++. +++++|+++||+-.
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223444443 27999999999844
No 356
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.12 Score=52.73 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|.|.|.+|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 357
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.80 E-value=0.054 Score=53.64 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
||.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987643
No 358
>PRK06762 hypothetical protein; Provisional
Probab=93.79 E-value=0.058 Score=55.00 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
..+|.|+|+.|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 359
>PRK13948 shikimate kinase; Provisional
Probab=93.75 E-value=0.3 Score=50.12 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..+.|.++||.|+||||+++.+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998764
No 360
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.73 E-value=0.17 Score=58.62 Aligned_cols=87 Identities=20% Similarity=0.320 Sum_probs=53.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC-HHHHHHHHHHHhCCCC-------CCCChHHH-----
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD-LKRIRREIADQLGLNF-------CEESDSER----- 227 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~----- 227 (1342)
..++|+|..|+|||||++.+..... .+.++.+-+.+... +.++.++++..-+... ..++...+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999986432 35666677776653 5666666544322110 01111111
Q ss_pred -HHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 228 -IMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 228 -~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
+-.+.+++. +++++|+++||+-..
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 122333332 489999999998543
No 361
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.70 E-value=0.083 Score=53.52 Aligned_cols=115 Identities=20% Similarity=0.258 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC--CcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ--TPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKR 237 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~ 237 (1342)
-.+++|+|..|.|||||.+.++.... .....+++.-.. ..+..+..+ +.++.-..-......--.+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~qLS~G~~qrl~laral~- 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDARR---AGIAMVYQLSVGERQMVEIARALA- 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHHHh---cCeEEEEecCHHHHHHHHHHHHHh-
Confidence 35899999999999999999987543 234445542211 111111111 111110001111111222334444
Q ss_pred CCcEEEEEcCCCCccc---ccccCCCCCC-CCCCcEEEEEecchhhhh
Q 000704 238 EKKILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 238 ~k~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iliTtr~~~v~~ 281 (1342)
.++-++++|+.-..-+ .+.+...+.. ...|.-||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5778899999755422 1222222211 123667888888876433
No 362
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.70 E-value=0.15 Score=51.98 Aligned_cols=26 Identities=42% Similarity=0.436 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.|||||++.+..-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 35899999999999999999987543
No 363
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.65 E-value=0.27 Score=49.99 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.|||||++.+.....
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987654
No 364
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.65 E-value=1.1 Score=49.24 Aligned_cols=127 Identities=11% Similarity=-0.011 Sum_probs=70.6
Q ss_pred HHHHHHHHHcCCCe-EEEEEEcCCCCcHHHHHHHHHHHHhcC------------CCcceEEEEE-ecCC--cCHHHHHHH
Q 000704 147 ILNDILDALRGPYV-YMIGVYGMAGIGKTTLVKEVARLAKEG------------RIFDEVVFAE-VSQT--PDLKRIRRE 210 (1342)
Q Consensus 147 ~~~~l~~~l~~~~~-~vi~I~G~gG~GKTtLa~~v~~~~~~~------------~~F~~~~wv~-vs~~--~~~~~~~~~ 210 (1342)
.-+.+...+..+++ ...-++|+.|+||+++|..++...--. .|-|.. |+. .... ..+
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~-~i~p~~~~~~I~i------ 77 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH-EFSPQGKGRLHSI------ 77 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE-EEecCCCCCcCcH------
Confidence 34566666666554 467799999999999999988765421 122222 221 1110 112
Q ss_pred HHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCc--ccccccCCCCCCCCCCcEEEEEecc-hhhhhhh
Q 000704 211 IADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTS--LDLERTGIPFGDVHRGCKILVTSRR-RDVLVSE 283 (1342)
Q Consensus 211 i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~--~~~~~l~~~l~~~~~gs~iliTtr~-~~v~~~~ 283 (1342)
+.+..+.+.+. .+++-++|+|+++.. +.+..+...+-....++.+|++|.+ ..+....
T Consensus 78 ---------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 78 ---------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred ---------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHH
Confidence 22333333332 256678899998766 4555555555444456666655555 5554432
Q ss_pred cCcCccEEecCC
Q 000704 284 MHCQNNYCVSVL 295 (1342)
Q Consensus 284 ~~~~~~~~l~~L 295 (1342)
......+.+.++
T Consensus 143 ~SRcq~~~~~~~ 154 (290)
T PRK05917 143 RSRSLSIHIPME 154 (290)
T ss_pred HhcceEEEccch
Confidence 333445666654
No 365
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.63 E-value=0.061 Score=56.22 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 366
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.63 E-value=0.2 Score=54.96 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
+.|.|.|.+|.||||+|+++......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 56899999999999999999998764
No 367
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.23 Score=55.74 Aligned_cols=85 Identities=31% Similarity=0.371 Sum_probs=58.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1342)
-.+|.|=|-+|||||||.-++..+...+. .+.+|+--+ +...+ +--+++++.....- -.+..++.+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46999999999999999999999987443 666665443 33322 33456666433221 123345667777777
Q ss_pred CCcEEEEEcCCCC
Q 000704 238 EKKILVILDDIWT 250 (1342)
Q Consensus 238 ~k~~LlvlDdv~~ 250 (1342)
.+.-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 7999999999854
No 368
>PRK03839 putative kinase; Provisional
Probab=93.59 E-value=0.061 Score=55.71 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999864
No 369
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.58 E-value=3.3 Score=49.98 Aligned_cols=198 Identities=20% Similarity=0.203 Sum_probs=112.7
Q ss_pred cccchHHHHHHHHHHHc----C-CCeEEEEEEcCCCCcHHHHHHHHHHHHh---c---CCCcceEEEEEecCCcCHHHHH
Q 000704 140 FIESRESILNDILDALR----G-PYVYMIGVYGMAGIGKTTLVKEVARLAK---E---GRIFDEVVFAEVSQTPDLKRIR 208 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~----~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~---~---~~~F~~~~wv~vs~~~~~~~~~ 208 (1342)
.+-+|+.+..+|-+.+. + ..-+.+-|.|-+|.|||..+..|.+... . -..|+. +.|+.-.-..+.++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHH
Confidence 45589999888888776 3 3445899999999999999999998654 1 223433 334444445689999
Q ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHh----cCCcEEEEEcCCCCccc--ccccCCCCC-CCCCCcEEEEEecc--hhh
Q 000704 209 REIADQLGLNFCEESDSERIMMLCNRLK----REKKILVILDDIWTSLD--LERTGIPFG-DVHRGCKILVTSRR--RDV 279 (1342)
Q Consensus 209 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~k~~LlvlDdv~~~~~--~~~l~~~l~-~~~~gs~iliTtr~--~~v 279 (1342)
..|..++...... ....++.+..++. +.+..+|++|+++..-. -+-+...|. ...++||++|.+=. .+.
T Consensus 476 ~~I~~~lsg~~~~--~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 476 EKIWEALSGERVT--WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHhcccCccc--HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 9999998765332 1222333434443 24678888998754411 111111121 13468887775422 111
Q ss_pred hhh--------hcCcCccEEecCCCHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHhCCChHHHHHHHHH
Q 000704 280 LVS--------EMHCQNNYCVSVLNKEEAWSLFSKVVG--NCVEDPDLQTVAIQVANECGGLPIAILTVART 341 (1342)
Q Consensus 280 ~~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~ 341 (1342)
... .+| ...+.+.+.+.++-.++...+.. +.......+-+|++|+..-|-.-.|+.+.-++
T Consensus 554 PEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 554 PERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111 111 23466666776666666655542 11223334445555655555555555544443
No 370
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=93.57 E-value=0.089 Score=58.90 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1342)
++|+|+|-||+||||+|..+..-... ..+ .+.-|.....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~-~G~-rVLliD~Dpq 40 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAE-SGK-KVLVVGCDPK 40 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHh-CCC-EEEEEeeCCc
Confidence 57899999999999999998887763 223 2444444433
No 371
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.55 E-value=0.29 Score=50.61 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=61.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEE---ecCCcCHHHHHHH------HHHHhCCCCC-----C-CC-
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAE---VSQTPDLKRIRRE------IADQLGLNFC-----E-ES- 223 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~~~~------i~~~l~~~~~-----~-~~- 223 (1342)
-.+++|+|..|.|||||++.++.... .....+++. +. ..+..+..+. +++.++.... . -+
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 35899999999999999999987543 233444432 21 1122222222 3444443211 0 11
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCCCCccc---ccccCCCCCCC-CC-CcEEEEEecchhhh
Q 000704 224 DSERIMMLCNRLKREKKILVILDDIWTSLD---LERTGIPFGDV-HR-GCKILVTSRRRDVL 280 (1342)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~---~~~l~~~l~~~-~~-gs~iliTtr~~~v~ 280 (1342)
....--.+.+.+. ..+-++++|+--..-+ .+.+...+..- .. |..||++|.+....
T Consensus 101 G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1111222344454 5888999999654422 22222222211 12 66788888876654
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.55 E-value=0.19 Score=63.89 Aligned_cols=183 Identities=16% Similarity=0.160 Sum_probs=92.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHH-hcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCC----CCC---ChHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLA-KEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNF----CEE---SDSERIMM 230 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~---~~~~~~~~ 230 (1342)
+..++.|+|+.|.||||+.+.+.... ..... .+|.......+ .+...+...++... ... ........
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 45789999999999999999998662 11111 11111110000 00111111111000 000 01111222
Q ss_pred HHHHHhcCCcEEEEEcCCCCccc---cccc----CCCCCCCCCCcEEEEEecchhhhhhhcCcC--ccEEecCCCHHHHH
Q 000704 231 LCNRLKREKKILVILDDIWTSLD---LERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQ--NNYCVSVLNKEEAW 301 (1342)
Q Consensus 231 l~~~l~~~k~~LlvlDdv~~~~~---~~~l----~~~l~~~~~gs~iliTtr~~~v~~~~~~~~--~~~~l~~L~~~~~~ 301 (1342)
+...+ .++-|+++|..-...+ ...+ ...+. ..|+.+|+||....+........ ....+. ++.+ ..
T Consensus 396 il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l 469 (771)
T TIGR01069 396 ILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TL 469 (771)
T ss_pred HHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CC
Confidence 22222 4789999999876532 1112 22222 25789999999988755311111 112221 1111 00
Q ss_pred HHHHHHh--CCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 000704 302 SLFSKVV--GNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1342)
Q Consensus 302 ~lf~~~~--~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~~ 359 (1342)
. |..+. |... ...|-.||+++ |+|-.|.--|..+-.....+.+.++..+..
T Consensus 470 ~-p~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 470 S-PTYKLLKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred c-eEEEECCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 11111 2111 23477888877 799999988888876666568888877763
No 373
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.87 Score=50.50 Aligned_cols=51 Identities=27% Similarity=0.295 Sum_probs=36.5
Q ss_pred cccccchHHHHHHHHHHHc----C----------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 000704 138 HEFIESRESILNDILDALR----G----------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF 190 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~----~----------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F 190 (1342)
...+.|-+..++.+.+... . ...+-|-.+|++|.|||-||++++.... ..|
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeag--a~f 155 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAG--ANF 155 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcC--CCc
Confidence 3445566776666665543 0 1346788999999999999999998875 445
No 374
>PRK13236 nitrogenase reductase; Reviewed
Probab=93.52 E-value=0.1 Score=58.69 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 157 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
+.+.+||++.|-||+||||.|..++.-...
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~ 32 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAE 32 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHH
Confidence 456799999999999999999998887764
No 375
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.51 E-value=0.38 Score=56.03 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH-----
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE----- 226 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 226 (1342)
-..++|+|..|+|||||++.+++... .+.++++-+.+.. .+.++..+.+..-+... ..++...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999997654 3455667676655 35566655544322110 0111111
Q ss_pred -HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. +++++|+++||+-..
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1222334442 489999999998543
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.49 E-value=0.37 Score=52.33 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.-+++.|+|.+|+||||+|.++...... .=..++|++..+. .+++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~--~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENT--SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCC--HHHHHHHH
Confidence 4579999999999999999998654321 2346788888654 45666554
No 377
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.49 E-value=0.38 Score=53.60 Aligned_cols=85 Identities=21% Similarity=0.315 Sum_probs=50.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC-----CChHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE-----ESDSERIMMLCNR 234 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~l~~~ 234 (1342)
-+++-|+|..|+||||||-.+....... -..++||.....++... +++++.+.+. +...+.+-.+.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 3599999999999999999999876532 45688999887776543 3444543221 1222223233344
Q ss_pred H-hcCCcEEEEEcCCCCc
Q 000704 235 L-KREKKILVILDDIWTS 251 (1342)
Q Consensus 235 l-~~~k~~LlvlDdv~~~ 251 (1342)
+ +.+.--++|+|.|...
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 3 3355568999998765
No 378
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.47 E-value=0.44 Score=55.81 Aligned_cols=90 Identities=22% Similarity=0.360 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH------
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE------ 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------ 226 (1342)
.-++|+|.+|+|||||+.++........ =+.++++-+.+.. .+.++++++...-.... ...+...
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 4689999999999999999887765322 2467778787665 46777777765322110 0111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. +++++|+++||+-..
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHHH
Confidence 1222344442 479999999998543
No 379
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.46 E-value=0.059 Score=50.02 Aligned_cols=23 Identities=52% Similarity=0.729 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|-|+|.+|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999888765
No 380
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.44 E-value=0.38 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
||.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998764
No 381
>PRK13949 shikimate kinase; Provisional
Probab=93.42 E-value=0.084 Score=53.68 Aligned_cols=24 Identities=46% Similarity=0.443 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-|.|+|+.|+||||+|+.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998765
No 382
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.42 E-value=0.24 Score=50.75 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35899999999999999999988654
No 383
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.36 E-value=0.18 Score=56.84 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=26.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
+.+.|+.|+||||+|+.+.+.......+ .+.+++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~Dd 38 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYDD 38 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEcccc
Confidence 5789999999999999999887633333 344454443
No 384
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.33 Score=58.29 Aligned_cols=170 Identities=21% Similarity=0.258 Sum_probs=88.4
Q ss_pred ccccchHH---HHHHHHHHHcCCC---------eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHH
Q 000704 139 EFIESRES---ILNDILDALRGPY---------VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKR 206 (1342)
Q Consensus 139 ~~~~gr~~---~~~~l~~~l~~~~---------~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 206 (1342)
.++-|.++ ++.++++.|.++. .+=+..+|++|.|||.||++++....+- | .++|...-++-
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~FVem 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSDFVEM 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchhhhhh
Confidence 34456554 5555666776432 4568899999999999999999887753 2 22222110100
Q ss_pred HHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCccc------------c----cccCCCCCC--CCCCc
Q 000704 207 IRREIADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTSLD------------L----ERTGIPFGD--VHRGC 268 (1342)
Q Consensus 207 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~------------~----~~l~~~l~~--~~~gs 268 (1342)
. .+ -...++..+...-++.-++.|++|.++.... + ..+..-... .+.|-
T Consensus 223 f-------VG------vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gv 289 (596)
T COG0465 223 F-------VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGV 289 (596)
T ss_pred h-------cC------CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCce
Confidence 0 00 1234555566665556789999998755411 1 112111111 22344
Q ss_pred EEEEEecchhhhhh---hcCc-CccEEecCCCHHHHHHHHHHHhCCCC--CCccHHHHHHHHHHHhCCCh
Q 000704 269 KILVTSRRRDVLVS---EMHC-QNNYCVSVLNKEEAWSLFSKVVGNCV--EDPDLQTVAIQVANECGGLP 332 (1342)
Q Consensus 269 ~iliTtr~~~v~~~---~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~c~glP 332 (1342)
.|+..|-..+|.+. ..+. .+.+.++.-+...-.++++-++.... ..-++. .|++.+-|.-
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~----~iAr~tpGfs 355 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLK----KIARGTPGFS 355 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHH----HHhhhCCCcc
Confidence 44444544555533 1222 33455555555666666665553211 222322 2666666654
No 385
>PRK00625 shikimate kinase; Provisional
Probab=93.35 E-value=0.068 Score=54.35 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|.++||.|+||||+|+.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 386
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.35 E-value=0.5 Score=63.40 Aligned_cols=26 Identities=35% Similarity=0.299 Sum_probs=23.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+=|-++|++|.|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999875
No 387
>PRK04040 adenylate kinase; Provisional
Probab=93.33 E-value=0.076 Score=54.99 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+|+|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998763
No 388
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.32 E-value=0.13 Score=60.20 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=39.0
Q ss_pred cccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc
Q 000704 140 FIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFD 191 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~ 191 (1342)
.++||++.++.+...+..+ .-|-|.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 4789999999988777633 3588999999999999999998764333343
No 389
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.30 E-value=0.25 Score=51.81 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++++|+|+.|.||||+.+.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999998654
No 390
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.30 E-value=0.077 Score=50.20 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=27.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT 201 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 201 (1342)
.+-|.|.|.+|+||||+|.+++.... | -|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~----~---~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG----L---EYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC----C---ceEehhhH
Confidence 34689999999999999999996543 2 36776653
No 391
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.28 E-value=0.2 Score=53.37 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC-----CcCHHHHHHHHHHHhCCCCC------CC-ChHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ-----TPDLKRIRREIADQLGLNFC------EE-SDSE 226 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~------~~-~~~~ 226 (1342)
+-.+++|||..|.||||+|+.+..-.+.. . ..+++.-.+ .....+-..++++.++.... .+ +...
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt--~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT--S-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC--C-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999999766532 2 223332111 22234445566666664321 11 1111
Q ss_pred HH-HHHHHHHhcCCcEEEEEcCCCCcccc---cccCCCCC--CCCCCcEEEEEecchhhhhh
Q 000704 227 RI-MMLCNRLKREKKILVILDDIWTSLDL---ERTGIPFG--DVHRGCKILVTSRRRDVLVS 282 (1342)
Q Consensus 227 ~~-~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l~~~l~--~~~~gs~iliTtr~~~v~~~ 282 (1342)
+. -.+.+.+. -+.-++|.|..-+..+. ..+..-+. ....|-..++.|.+-.|+..
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhh
Confidence 11 12334443 68999999986444221 11111111 12246678888888887774
No 392
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.24 E-value=0.22 Score=55.11 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=42.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
+.-+++.|+|.+|+|||++|.++..... +....++||+..+ +.+++.+.+.+ ++.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e--~~~~l~~~~~~-~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEE--SPEELLENARS-FGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecC--CHHHHHHHHHH-cCC
Confidence 4568999999999999999999998877 4488899998876 34455554443 443
No 393
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.24 E-value=0.24 Score=51.60 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
++.|.|.+|+|||++|.++...... . =..++|++... +.+++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~-~-g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA-R-GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH-C-CCcEEEEECCC--CHHHHHHH
Confidence 3679999999999999998776541 1 24577887654 45555544
No 394
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.23 E-value=0.2 Score=51.46 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.|||||++.+.....
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 35899999999999999999997653
No 395
>PRK06851 hypothetical protein; Provisional
Probab=93.20 E-value=0.85 Score=52.02 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=33.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 157 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
++--+++.|.|.+|+||||++++++.... .+.++..++-|-+.
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~-~~G~~v~~~hC~~d 253 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE-ERGFDVEVYHCGFD 253 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH-hCCCeEEEEeCCCC
Confidence 34457899999999999999999999886 35677666665444
No 396
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.16 E-value=0.3 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|.|+|++|+||||+|+.+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999988764
No 397
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=93.13 E-value=0.1 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++|+|+|-||+||||+|..+..-..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La 26 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALS 26 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5788899999999999999887765
No 398
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.12 E-value=0.095 Score=52.75 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999988763
No 399
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=93.10 E-value=0.11 Score=58.11 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++|+|+|-||+||||+|-.+..-..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La 26 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHH
Confidence 5799999999999999999888765
No 400
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.07 E-value=0.1 Score=57.47 Aligned_cols=88 Identities=19% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHH
Q 000704 149 NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERI 228 (1342)
Q Consensus 149 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 228 (1342)
..+++.+...+. -+-++|+.|+|||++++........ ..| .+.-++.+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~------ 93 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRV------ 93 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEE------
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCC------
Confidence 445665555554 4589999999999999998865432 222 2334556655555544433222221110000
Q ss_pred HHHHHHHhcCCcEEEEEcCCC
Q 000704 229 MMLCNRLKREKKILVILDDIW 249 (1342)
Q Consensus 229 ~~l~~~l~~~k~~LlvlDdv~ 249 (1342)
. .-..+|+.++.+||+-
T Consensus 94 ---~-gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 94 ---Y-GPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ---E-EEESSSEEEEEEETTT
T ss_pred ---C-CCCCCcEEEEEecccC
Confidence 0 0012688999999983
No 401
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.05 E-value=0.19 Score=53.31 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=36.0
Q ss_pred HHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcC
Q 000704 147 ILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPD 203 (1342)
Q Consensus 147 ~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 203 (1342)
...++++.+. ..+..+|+|.|++|+||+||.-.+....+.+.+=-.++=|.-|..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFT 72 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCC
Confidence 3445555554 34678999999999999999999998887543333344444444443
No 402
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.00 E-value=0.38 Score=58.29 Aligned_cols=85 Identities=18% Similarity=0.247 Sum_probs=51.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC----------------C
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE----------------E 222 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------~ 222 (1342)
.-+++.|.|.+|+||||||.++......+ =+.+++++..+ +..++.+.+ +.++.+... .
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999999998876522 24566666544 455555553 444432110 1
Q ss_pred ChHHHHHHHHHHHhcCCcEEEEEcCC
Q 000704 223 SDSERIMMLCNRLKREKKILVILDDI 248 (1342)
Q Consensus 223 ~~~~~~~~l~~~l~~~k~~LlvlDdv 248 (1342)
...+.+..+.+.+.+.+.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 11334455555554445556666665
No 403
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=92.99 E-value=0.03 Score=54.90 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=27.9
Q ss_pred chHHHHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 143 SRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 143 gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|+-..++++.+.+. ...-.-|.|+|..|+||+++|+.++....
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 33344455554443 12234568999999999999999988654
No 404
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.96 E-value=0.28 Score=56.17 Aligned_cols=73 Identities=27% Similarity=0.418 Sum_probs=45.6
Q ss_pred ccchHHHHHHHHHHHcC--------------CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCc---ceEEEEEec-CCc
Q 000704 141 IESRESILNDILDALRG--------------PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIF---DEVVFAEVS-QTP 202 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~~--------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F---~~~~wv~vs-~~~ 202 (1342)
++|.++.++.+.-.+.. ...+-|.++|++|+||||+|+.+...... .| +...|+... ...
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~--~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGR 91 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC--eEEEeecceeecCCcccC
Confidence 56777776666544431 12367899999999999999999988752 23 222222221 223
Q ss_pred CHHHHHHHHHHHh
Q 000704 203 DLKRIRREIADQL 215 (1342)
Q Consensus 203 ~~~~~~~~i~~~l 215 (1342)
+++++++.+....
T Consensus 92 dvE~i~r~l~e~A 104 (441)
T TIGR00390 92 DVESMVRDLTDAA 104 (441)
T ss_pred CHHHHHHHHHHHH
Confidence 6777777665543
No 405
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.81 E-value=0.23 Score=46.43 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHHc----C---CCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 141 IESRESILNDILDALR----G---PYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~----~---~~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++|..-..+.+++.+. . .+.-|++..|..|+|||.+|+.+++..
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 5566555555555554 2 345699999999999999999999884
No 406
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.81 E-value=0.079 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
+|+|.|.+|.||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 407
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=92.77 E-value=0.58 Score=54.38 Aligned_cols=91 Identities=22% Similarity=0.322 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCC--Ccc---------eEEEEEecCCcCHHHHHHHHHHHhC-CCC-------CC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGR--IFD---------EVVFAEVSQTPDLKRIRREIADQLG-LNF-------CE 221 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~--~F~---------~~~wv~vs~~~~~~~~~~~i~~~l~-~~~-------~~ 221 (1342)
.-++|.|-+|+|||||+.++.++.+... ..| .++++.+.+.....+.+.+.+..-+ ... ..
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4689999999999999999998764100 022 5677888888666666666665544 211 01
Q ss_pred CChHH------HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 222 ESDSE------RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 222 ~~~~~------~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
++... .+-.+.+++. +++++|+++||+-..
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 11111 1223445555 479999999998443
No 408
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.71 E-value=0.4 Score=56.63 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=49.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEE-EEEecCCc-CHHHHHHHHHHHh-CCCCCCCCh-----HHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVV-FAEVSQTP-DLKRIRREIADQL-GLNFCEESD-----SERIMMLC 232 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~-~~~~~~~~i~~~l-~~~~~~~~~-----~~~~~~l~ 232 (1342)
.-..|+|.+|+|||||++.+.+.... .+-++.+ .+-|.+.. .+.++.+.+-..+ ....+.... ...+..+.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999987652 2334443 44555544 2334333320001 111111111 11122333
Q ss_pred HHHh-cCCcEEEEEcCCCCc
Q 000704 233 NRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 233 ~~l~-~~k~~LlvlDdv~~~ 251 (1342)
+++. .++.+||++|++-..
T Consensus 496 e~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 496 KRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHcCCCEEEEEeCchHH
Confidence 4442 489999999998543
No 409
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.70 E-value=0.5 Score=51.94 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQ 200 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 200 (1342)
.-+++.|.|.+|+||||+|.++...... .=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecC
Confidence 3469999999999999999998765432 224677888754
No 410
>PRK13768 GTPase; Provisional
Probab=92.69 E-value=0.5 Score=51.72 Aligned_cols=27 Identities=41% Similarity=0.625 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
..++.|.|+||+||||++..+....+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~ 28 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEE 28 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHh
Confidence 368999999999999999999887763
No 411
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.67 E-value=0.19 Score=54.97 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 149 NDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 149 ~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++..+++.+.++.+|.|+|..|.|||||+..+.+...
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344555567899999999999999999999999875
No 412
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.65 E-value=0.22 Score=61.28 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
....+.|+++.++.+...+... +.+.++|.+|+||||+|+.+.+... ..+|+..+|..- ...+..++++.+..+++
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 3456789888888877766544 4789999999999999999998753 345677888654 44467777888776665
Q ss_pred CC
Q 000704 217 LN 218 (1342)
Q Consensus 217 ~~ 218 (1342)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 43
No 413
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.03 Score=56.12 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=51.4
Q ss_pred ccccccceeeccccccccchhcccccccccccceEEEEeeCCCcccccchhHHhccCCccEEEEeeccchh
Q 000704 780 NAFPVLESMFLHNLIHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNME 850 (1342)
Q Consensus 780 ~~fp~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~~L~l~~c~~l~ 850 (1342)
..+++++.|.+.+|.++.+|+...... -+++|+.|+|++|+++++-. +..+..+++|+.|.+.+.+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G-L~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG-LACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH-HHHHHHhhhhHHHHhcCchhhh
Confidence 346778888888998888887655444 68899999999999888652 3456677888888877766543
No 414
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.65 E-value=0.27 Score=58.47 Aligned_cols=85 Identities=25% Similarity=0.300 Sum_probs=49.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLKR 237 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~ 237 (1342)
-.++.|.|.+|+|||||+.+++...... =..++|++..+ +...+.. -++.++.+.... ......+.+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ee--s~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEE--SASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccc--cHHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4699999999999999999998876522 23567777544 3333322 244554322110 000112344444443
Q ss_pred CCcEEEEEcCCC
Q 000704 238 EKKILVILDDIW 249 (1342)
Q Consensus 238 ~k~~LlvlDdv~ 249 (1342)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455677777763
No 415
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.64 E-value=0.6 Score=54.97 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcc--eEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH----
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFD--EVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE---- 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 226 (1342)
.-++|.|-.|+|||||+.++.++......+. .++++-+.+.. .+.+++.++...=..+. ...+...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4589999999999999999998765321111 56677776655 46677777654322110 0111111
Q ss_pred --HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 --RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 --~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+..+.+++. +++++|+++||+-..
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 1223455555 489999999998544
No 416
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.64 E-value=0.42 Score=48.40 Aligned_cols=80 Identities=21% Similarity=0.150 Sum_probs=44.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC-CcE
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE-KKI 241 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-k~~ 241 (1342)
+.|.|..|.|||++|.++... ....++++.-.+.++. ++.+.|.+-.......-...+....+.+.+.+. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 679999999999999998765 2346677766666654 344444332211111111112222333333221 333
Q ss_pred EEEEcCC
Q 000704 242 LVILDDI 248 (1342)
Q Consensus 242 LlvlDdv 248 (1342)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999986
No 417
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.63 E-value=0.65 Score=54.22 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=57.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC------C-CCChHH------
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF------C-EESDSE------ 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~------~-~~~~~~------ 226 (1342)
.-++|.|.+|+|||||+.++....... +=+.++++-+.+.. .+.+++.++...-.... . .++...
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468999999999999999998776522 22467788787654 46777777754321110 0 111111
Q ss_pred HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 ~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. +++++|+++||+-..
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1223445553 379999999998544
No 418
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.63 E-value=0.45 Score=50.84 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987654
No 419
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.62 E-value=0.081 Score=55.77 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
+|+|.|..|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 420
>PRK08149 ATP synthase SpaL; Validated
Probab=92.62 E-value=0.47 Score=55.20 Aligned_cols=88 Identities=14% Similarity=0.257 Sum_probs=52.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH-----
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE----- 226 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~----- 226 (1342)
-..++|+|..|.|||||++.++.... -+.++...+.... ++.++..+......... ..++...
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 35789999999999999999987543 3344444554433 46666666655432110 0111111
Q ss_pred -HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
.+..+.+++. ++|++|+++||+-..
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 1222333332 489999999998544
No 421
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.57 E-value=0.1 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998864
No 422
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.54 E-value=0.13 Score=52.85 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=24.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...+|+|+|++|+||||+|+.+.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999999875
No 423
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.51 E-value=0.57 Score=59.83 Aligned_cols=180 Identities=19% Similarity=0.261 Sum_probs=94.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh---cC-----------CCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCC
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK---EG-----------RIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEES 223 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~---~~-----------~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 223 (1342)
.+.+++.|+|+.+.||||+.+.+.-..- .. ..|+ .++..++...++..-+.....
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~---------- 393 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSG---------- 393 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHH----------
Confidence 3457899999999999999999874421 00 1111 122333322222211111110
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCCCCcccc---ccc----CCCCCCCCCCcEEEEEecchhhhhhhcCcCc--cEEecC
Q 000704 224 DSERIMMLCNRLKREKKILVILDDIWTSLDL---ERT----GIPFGDVHRGCKILVTSRRRDVLVSEMHCQN--NYCVSV 294 (1342)
Q Consensus 224 ~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l----~~~l~~~~~gs~iliTtr~~~v~~~~~~~~~--~~~l~~ 294 (1342)
.......+...+ .++-|+++|......+. ..+ ...+. ..|+.+|+||....++........ ...+..
T Consensus 394 ~m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~ 469 (782)
T PRK00409 394 HMTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF 469 (782)
T ss_pred HHHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE
Confidence 011122222222 47789999998765321 122 12222 247899999999887663111111 122211
Q ss_pred CCHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHhCCChHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 000704 295 LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRF 359 (1342)
Q Consensus 295 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~glPlai~~i~~~l~~~~~~~w~~~l~~l~~ 359 (1342)
+.+.-.-.++-..|... ...|-.||+++ |+|-.|.--|.-+-.....+.+.++..+..
T Consensus 470 -d~~~l~~~Ykl~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 470 -DEETLRPTYRLLIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred -ecCcCcEEEEEeeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11110000111112211 23477888877 799999998888876666668888887763
No 424
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.44 E-value=1.1 Score=50.70 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
+..+|+++|+.|+||||++..++...+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4679999999999999999999988763
No 425
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.43 E-value=0.099 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
||.|+|..|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 426
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=92.42 E-value=0.18 Score=57.08 Aligned_cols=47 Identities=26% Similarity=0.296 Sum_probs=39.1
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
+..++|.++.+..++-.+.++...-+.|.|..|+||||+++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 44688999988888777667666778899999999999999998655
No 427
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.42 E-value=0.11 Score=53.73 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+++|+|+.|+||||+|+.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 428
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.38 E-value=0.093 Score=49.15 Aligned_cols=28 Identities=39% Similarity=0.554 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhcCCCcce
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAKEGRIFDE 192 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~~~~~F~~ 192 (1342)
|-|+|.+|+||||+|+.++.... ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeE
Confidence 67899999999999999998865 55754
No 429
>PRK06217 hypothetical protein; Validated
Probab=92.37 E-value=0.1 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.|.|.|++|.||||+|+++.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998765
No 430
>PHA02774 E1; Provisional
Probab=92.37 E-value=0.24 Score=58.78 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=34.4
Q ss_pred HHHHHHHHHcC-CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe
Q 000704 147 ILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV 198 (1342)
Q Consensus 147 ~~~~l~~~l~~-~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v 198 (1342)
-+..+..++.. ++..-+.|+|++|.|||.+|..+.+-.. -..+.||+.
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~----G~vi~fvN~ 468 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK----GKVISFVNS 468 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC----CCEEEEEEC
Confidence 34555566653 4456899999999999999999998754 233456654
No 431
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.35 E-value=0.82 Score=51.11 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=36.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREI 211 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 211 (1342)
..++|.|..|+|||+|++++.++.. -+.++++-+.+.. .+.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 4799999999999999999998643 4578888887664 456666664
No 432
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.34 E-value=0.11 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+|+|.|..|.||||+|+.+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998875
No 433
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=92.32 E-value=0.18 Score=50.29 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEE
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 196 (1342)
|++|+|+.|+||||++..+....+. +.+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 5899999999999999999998763 345554444
No 434
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.32 E-value=0.4 Score=57.06 Aligned_cols=86 Identities=24% Similarity=0.306 Sum_probs=48.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEE--SDSERIMMLCNRLK 236 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~ 236 (1342)
.-.++.|.|.+|+|||||+.++........ ..++|++..+ +...+.. -++.++...... ......+.+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 346999999999999999999987665321 3577876543 3333322 233343321100 00012234444444
Q ss_pred cCCcEEEEEcCCC
Q 000704 237 REKKILVILDDIW 249 (1342)
Q Consensus 237 ~~k~~LlvlDdv~ 249 (1342)
+.+.-++|+|.+.
T Consensus 168 ~~~~~~vVIDSIq 180 (454)
T TIGR00416 168 EENPQACVIDSIQ 180 (454)
T ss_pred hcCCcEEEEecch
Confidence 4455667777763
No 435
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.31 E-value=0.22 Score=47.62 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
-.+|.+.|.-|+||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999988653
No 436
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.31 E-value=0.48 Score=59.16 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=54.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCC------CChHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCE------ESDSERIMMLC 232 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~ 232 (1342)
.-+++-|+|..|+||||||.+++..... .=..++|+.....++.+ .+++++.+... ...+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~--~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 3578999999999999999887665432 22567899887777743 66677665321 12222233333
Q ss_pred HHHhcCCcEEEEEcCCCC
Q 000704 233 NRLKREKKILVILDDIWT 250 (1342)
Q Consensus 233 ~~l~~~k~~LlvlDdv~~ 250 (1342)
..+.+++--+||+|.+-.
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 334445677899999853
No 437
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=92.29 E-value=0.28 Score=57.32 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=33.4
Q ss_pred ccchHHHHHHHHHHHc-------CC---------CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 141 IESRESILNDILDALR-------GP---------YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~-------~~---------~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++|.+..++.+...+. .. ..+.|.++|+.|+|||++|+.+.....
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 6788888777754431 10 125689999999999999999987654
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.28 E-value=0.29 Score=52.81 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=31.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
-+++.|.|.+|+|||++|.++....... .=+.++||+..+. .+++.+.+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~ 67 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENM 67 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHH
Confidence 3599999999999999999966544311 0135678877554 35555543
No 439
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.26 E-value=0.25 Score=55.32 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 210 (1342)
.+++.+.|.||+||||+|.+.+-...... ..+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999777666332 44777777777777766654
No 440
>PLN02200 adenylate kinase family protein
Probab=92.20 E-value=0.52 Score=50.73 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..+|.|.|++|+||||+|+.+.+...
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987653
No 441
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.18 E-value=0.31 Score=49.01 Aligned_cols=113 Identities=20% Similarity=0.297 Sum_probs=58.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc--CHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcC
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQLGLNFCEESDSERIMMLCNRLKRE 238 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 238 (1342)
.+++|+|..|.|||||++.+..... .....+++.-.... ...+..+. ++.-..-.........+...+. .
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~----i~~~~qlS~G~~~r~~l~~~l~-~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEELRRR----IGYVPQLSGGQRQRVALARALL-L 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHHHhc----eEEEeeCCHHHHHHHHHHHHHh-c
Confidence 6899999999999999999987543 23445554321111 11121111 1110001111122223444454 4
Q ss_pred CcEEEEEcCCCCccc---ccccCCCCCC-CCCCcEEEEEecchhhhh
Q 000704 239 KKILVILDDIWTSLD---LERTGIPFGD-VHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 239 k~~LlvlDdv~~~~~---~~~l~~~l~~-~~~gs~iliTtr~~~v~~ 281 (1342)
..-++++|+.-..-+ ...+...+.. ...|..|+++|.+.....
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 678899999765422 2222222211 112567888888877655
No 442
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=92.08 E-value=0.2 Score=56.30 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1342)
+.++|+|+|-||+||||.|..+..-... ..+. +.-|...
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~-~g~k-VLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVE-MGQK-ILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHH-CCCe-EEEEecc
Confidence 4578999999999999999988776653 3343 3444433
No 443
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=92.07 E-value=0.17 Score=57.35 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=41.8
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++..++|.++.+..|+..+.++.+.-|.|.|..|.||||+|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4556889999888888887787777778999999999999999987654
No 444
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.06 E-value=0.69 Score=50.18 Aligned_cols=94 Identities=11% Similarity=0.174 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHHhcCCCcceE-EEEEecCCc-CHHHHHHHHHHHhCCC-------CCCCChHHH---
Q 000704 161 YMIGVYGMAGIGKTTLV-KEVARLAKEGRIFDEV-VFAEVSQTP-DLKRIRREIADQLGLN-------FCEESDSER--- 227 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 227 (1342)
.-++|+|..|+|||+|| ..+.+.. +-+.+ +++-+.+.. .+.++.+++.+.-... ...++...+
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 46899999999999996 5565542 23444 667777664 4667777666432111 001111111
Q ss_pred ---HHHHHHHHh-cCCcEEEEEcCCCCc-ccccccC
Q 000704 228 ---IMMLCNRLK-REKKILVILDDIWTS-LDLERTG 258 (1342)
Q Consensus 228 ---~~~l~~~l~-~~k~~LlvlDdv~~~-~~~~~l~ 258 (1342)
+-.+.+++. +++++|+|+||+-.. ..|.++.
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEis 181 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMS 181 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHH
Confidence 122233333 379999999998554 3455443
No 445
>PRK14532 adenylate kinase; Provisional
Probab=92.06 E-value=0.49 Score=49.34 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 000704 163 IGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
|.|+|++|+||||+|+.+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7889999999999999998764
No 446
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.04 E-value=0.6 Score=54.37 Aligned_cols=88 Identities=22% Similarity=0.378 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHHH----
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSER---- 227 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 227 (1342)
-..++|+|..|+|||||.+.+++... -+.++++-+.+.. .+.++..+.+..-+... ..++...+
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAG 237 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999998654 3567788777665 45555544333211110 01111111
Q ss_pred --HHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 228 --IMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 228 --~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
+-.+.+++. ++|++|+++||+-..
T Consensus 238 ~~a~tiAEyfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 238 FVATSIAEYFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 122333332 489999999998543
No 447
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=92.04 E-value=0.82 Score=56.46 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=36.7
Q ss_pred cccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 138 HEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
...++|+...+.++++.+. ...-.-|.|+|..|+|||++|+.+.+...
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 4467888888888887765 12233567999999999999999998643
No 448
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.63 Score=58.58 Aligned_cols=102 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred cccchHHHHHHHHHHHcC------C--CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHH
Q 000704 140 FIESRESILNDILDALRG------P--YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREI 211 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~~------~--~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 211 (1342)
.++|.++.+..+.+.+.. . ....+.+.|+.|+|||-||++++.... ...+..+-+..|+ ... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechhh------hhh-h
Confidence 355667777777776651 1 456888999999999999999998774 3344445444443 222 2
Q ss_pred HHHhCCCCCCCChHHHHHHHHHHHhcCCcEEEEEcCCCCc
Q 000704 212 ADQLGLNFCEESDSERIMMLCNRLKREKKILVILDDIWTS 251 (1342)
Q Consensus 212 ~~~l~~~~~~~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~ 251 (1342)
.+-.+. .+.--..+...++.+.+++.-..+|+||||+..
T Consensus 634 skligs-p~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 634 SKLIGS-PPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhccCC-CcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 222222 221112233446677776544556777999876
No 449
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.03 E-value=0.43 Score=51.26 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+|+|.|..|+||||+|+.+.+..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998765
No 450
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.01 E-value=0.76 Score=50.02 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEG 187 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~ 187 (1342)
+..|+|++|+||||||.+++-.....
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G 28 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALG 28 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 56899999999999999998876543
No 451
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.98 E-value=0.17 Score=52.49 Aligned_cols=38 Identities=29% Similarity=0.279 Sum_probs=30.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1342)
.++|.|+|+.|+|||||++.+..... ..|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeeccc
Confidence 36899999999999999999999875 568666665543
No 452
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=1.6 Score=52.49 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=49.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHhcCCc
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLNFCEESDSERIMMLCNRLKREKK 240 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~k~ 240 (1342)
.=|-++|++|.|||-||.+++.....+ +|+|-.+ +++.+.+ |. .++.+..++.+-+.-|+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~KyI---Ga------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSKYI---GA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHHHh---cc------cHHHHHHHHHHhhccCC
Confidence 358899999999999999998765422 4665442 3333222 21 23456677777776799
Q ss_pred EEEEEcCCCCc
Q 000704 241 ILVILDDIWTS 251 (1342)
Q Consensus 241 ~LlvlDdv~~~ 251 (1342)
+.+.+|..++.
T Consensus 762 CiLFFDEfdSi 772 (952)
T KOG0735|consen 762 CILFFDEFDSI 772 (952)
T ss_pred eEEEecccccc
Confidence 99999998665
No 453
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=91.97 E-value=0.63 Score=54.29 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=49.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCCC-----CCC-CChHH------H
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGLN-----FCE-ESDSE------R 227 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~-----~~~-~~~~~------~ 227 (1342)
-..++|+|..|+|||||++.+....+ ....++|..--...++.++........... ... ++... .
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 35799999999999999998876443 123444443323445555544443332110 111 11111 1
Q ss_pred HHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 228 IMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 228 ~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
+-.+.+++. +++++|+++||+-..
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 112333332 379999999998543
No 454
>PRK13695 putative NTPase; Provisional
Probab=91.97 E-value=0.21 Score=51.33 Aligned_cols=34 Identities=44% Similarity=0.581 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEE
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFA 196 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv 196 (1342)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999999988764 335444454
No 455
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=91.97 E-value=0.6 Score=54.89 Aligned_cols=90 Identities=21% Similarity=0.337 Sum_probs=56.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC--------------CCCChH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF--------------CEESDS 225 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~--------------~~~~~~ 225 (1342)
.-++|.|-+|+|||||+.++....... +=+.++++-+.+.. .+.+++.++...-.... ..++..
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~-~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~ 240 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPG 240 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHh-cCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHH
Confidence 468999999999999999988774311 12778888888765 46777777765211110 001111
Q ss_pred ------HHHHHHHHHHhc-C-CcEEEEEcCCCCc
Q 000704 226 ------ERIMMLCNRLKR-E-KKILVILDDIWTS 251 (1342)
Q Consensus 226 ------~~~~~l~~~l~~-~-k~~LlvlDdv~~~ 251 (1342)
-.+-.+.+++.. + +++|+++||+-..
T Consensus 241 ~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 241 ARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 112234555543 4 4999999998544
No 456
>PRK13947 shikimate kinase; Provisional
Probab=91.96 E-value=0.13 Score=52.76 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 457
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.95 E-value=0.25 Score=56.34 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=33.2
Q ss_pred cccchHHHHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 000704 140 FIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARL 183 (1342)
Q Consensus 140 ~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~ 183 (1342)
.++|+...+.++.+.+. ...-.-|.|+|..|+||+++|+.+...
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46777777777777665 122345889999999999999999854
No 458
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.93 E-value=0.11 Score=50.98 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVA 181 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~ 181 (1342)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 459
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.90 E-value=0.48 Score=48.56 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=66.0
Q ss_pred HHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcC-CCcceEEEEEecCCcCHHHHHHHHHHHhCC--------CCCC
Q 000704 151 ILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEG-RIFDEVVFAEVSQTPDLKRIRREIADQLGL--------NFCE 221 (1342)
Q Consensus 151 l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~--------~~~~ 221 (1342)
++..+-.....-.-|.|++|+|||||.+.++.-.... +.|-..--+-+... .+|+..+.. ..+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer-------sEIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER-------SEIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc-------chhhccccCCchhhhhhhhhh
Confidence 5555555566668899999999999999999877643 23432211111111 122221111 0000
Q ss_pred CChHHHHHHHHHHHhcCCcEEEEEcCCCCcccccccCCCCCCCCCCcEEEEEecchhhhh
Q 000704 222 ESDSERIMMLCNRLKREKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 222 ~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~~~l~~~l~~~~~gs~iliTtr~~~v~~ 281 (1342)
.+..-..+-+...+..-.+=.+|+|.+...++-.++..++. .|-+++.|..-..+.+
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~---~GVkli~TaHG~~ied 257 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTALH---AGVKLITTAHGNGIED 257 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHh---cCcEEEEeeccccHHH
Confidence 00000111222233334677899999988876665555543 6888887776544433
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.90 E-value=0.12 Score=51.69 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
+|.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 461
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.86 E-value=0.88 Score=52.91 Aligned_cols=118 Identities=20% Similarity=0.215 Sum_probs=65.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCC-----C----cc-----------eEEEEE--e---cCCcCHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGR-----I----FD-----------EVVFAE--V---SQTPDLKRIRREIADQ 214 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~-----~----F~-----------~~~wv~--v---s~~~~~~~~~~~i~~~ 214 (1342)
-..|++||+.|+|||||.+.++-+..... + |. ...|.. + -......+..+.|+..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 35799999999999999999998765321 1 11 001110 0 0012456777788888
Q ss_pred hCCCCCCC-------ChHHHHHHHHHHHhcCCcEEEEEcCCCCcccc---cccCCCCCCCCCCcEEEEEecchhh
Q 000704 215 LGLNFCEE-------SDSERIMMLCNRLKREKKILVILDDIWTSLDL---ERTGIPFGDVHRGCKILVTSRRRDV 279 (1342)
Q Consensus 215 l~~~~~~~-------~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l~~~l~~~~~gs~iliTtr~~~v 279 (1342)
++..-+.+ ++.+...-++-++.-..+-++|||.--+.-+. +.+..++..- .|. ||++|.+..+
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~-~Gg-vv~vSHDfrl 568 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF-PGG-VVLVSHDFRL 568 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc-CCc-eeeeechhhH
Confidence 87763332 22222333444444468899999986555322 2222222221 243 6666665543
No 462
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.86 E-value=0.13 Score=52.79 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++|.+.|++|+||||+|+.+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 463
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=91.85 E-value=0.77 Score=54.27 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=57.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcC---CCcceEEEEEecCCc-CHHHHHHHHHHHhCCCC-------CCCChHH---
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEG---RIFDEVVFAEVSQTP-DLKRIRREIADQLGLNF-------CEESDSE--- 226 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~--- 226 (1342)
.-++|.|-.|+|||||+..+.++.... ..| .++++-+.+.. .+.+++.++...=..+. ..++...
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 468899999999999999999876521 111 56777777665 46777777765421110 0011111
Q ss_pred ---HHHHHHHHHh--cCCcEEEEEcCCCCc
Q 000704 227 ---RIMMLCNRLK--REKKILVILDDIWTS 251 (1342)
Q Consensus 227 ---~~~~l~~~l~--~~k~~LlvlDdv~~~ 251 (1342)
.+..+.+++. +++++|+++||+-..
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcChHHH
Confidence 1223455555 479999999998543
No 464
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.84 E-value=1.4 Score=43.73 Aligned_cols=115 Identities=23% Similarity=0.220 Sum_probs=61.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEe---cCCcCHHHHHHHHHHHh-----CCC--CCCCChHH---H
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEV---SQTPDLKRIRREIADQL-----GLN--FCEESDSE---R 227 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~~~~~~~~~i~~~l-----~~~--~~~~~~~~---~ 227 (1342)
..|-|++..|.||||+|...+-+..- ..+ .+.+|.+ ........+++.+- .+ +.. +....... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~-~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG-HGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 46788889999999999998877652 233 3333333 22334444444431 01 110 00011111 1
Q ss_pred H----HHHHHHHhcCCcEEEEEcCCCCc-----ccccccCCCCCCCCCCcEEEEEecchh
Q 000704 228 I----MMLCNRLKREKKILVILDDIWTS-----LDLERTGIPFGDVHRGCKILVTSRRRD 278 (1342)
Q Consensus 228 ~----~~l~~~l~~~k~~LlvlDdv~~~-----~~~~~l~~~l~~~~~gs~iliTtr~~~ 278 (1342)
+ ....+.+..++-=|||||++-.. .+.+.+...+.....+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1 12223333345669999998544 223344444444445678999999865
No 465
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.81 E-value=0.27 Score=52.14 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.6
Q ss_pred HHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 154 ALRGPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 154 ~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+.+.++++|+++|..|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999988754
No 466
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.81 E-value=0.63 Score=56.15 Aligned_cols=128 Identities=23% Similarity=0.246 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHhcC-CCc-----ceEEEEEecCCc-------CH------------HHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAKEG-RIF-----DEVVFAEVSQTP-------DL------------KRIRREIADQL 215 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~~~-~~F-----~~~~wv~vs~~~-------~~------------~~~~~~i~~~l 215 (1342)
..|+|+|+.|+|||||.+.+....... ... -.+.++ +|.. ++ +.-.+..+.++
T Consensus 349 ~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf--~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f 426 (530)
T COG0488 349 DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYF--DQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF 426 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEE--EehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc
Confidence 469999999999999999997665422 000 111222 1111 11 23333444444
Q ss_pred CCCCCC-------CChHHHHHHHHHHHhcCCcEEEEEcCCCCcccc---cccCCCCCCCCCCcEEEEEecchhhhhhhcC
Q 000704 216 GLNFCE-------ESDSERIMMLCNRLKREKKILVILDDIWTSLDL---ERTGIPFGDVHRGCKILVTSRRRDVLVSEMH 285 (1342)
Q Consensus 216 ~~~~~~-------~~~~~~~~~l~~~l~~~k~~LlvlDdv~~~~~~---~~l~~~l~~~~~gs~iliTtr~~~v~~~~~~ 285 (1342)
+-.... -+..+...-....+.-.+.-++|||.=-+.-+. +.+..++.. -+|+ ||+.|.++..... ..
T Consensus 427 ~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~-f~Gt-vl~VSHDr~Fl~~-va 503 (530)
T COG0488 427 GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD-FEGT-VLLVSHDRYFLDR-VA 503 (530)
T ss_pred CCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh-CCCe-EEEEeCCHHHHHh-hc
Confidence 332111 122223333344444478999999986555322 222222221 1355 8888898887773 33
Q ss_pred cCccEEecC
Q 000704 286 CQNNYCVSV 294 (1342)
Q Consensus 286 ~~~~~~l~~ 294 (1342)
.+.+.+++
T Consensus 504 -~~i~~~~~ 511 (530)
T COG0488 504 -TRIWLVED 511 (530)
T ss_pred -ceEEEEcC
Confidence 44555553
No 467
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=91.73 E-value=0.26 Score=48.46 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 157 GPYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 157 ~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
..+..||...|.+|.||||+|.+++.....
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 456679999999999999999999998863
No 468
>PTZ00185 ATPase alpha subunit; Provisional
Probab=91.73 E-value=0.53 Score=55.08 Aligned_cols=90 Identities=16% Similarity=0.237 Sum_probs=52.6
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHHhc-----CCCcceEEEEEecCCcC-HHHHHHHHHHHhC-CCC-------CCCChH
Q 000704 161 YMIGVYGMAGIGKTTLV-KEVARLAKE-----GRIFDEVVFAEVSQTPD-LKRIRREIADQLG-LNF-------CEESDS 225 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~-~~~-------~~~~~~ 225 (1342)
.-++|.|-.|+|||||| -.+.++..+ .++-+.++++.+.+..+ +.++ .+.+++-+ .+. ..++..
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei-~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHH-HHHHHhcCCccceEEEEECCCCCHH
Confidence 45799999999999997 566776532 13446788898988764 4443 33333332 110 011111
Q ss_pred H------HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 226 E------RIMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 226 ~------~~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
. ..-.+.+.+. +++.+|+|+||+-..
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1 1112233332 479999999998554
No 469
>PF13245 AAA_19: Part of AAA domain
Probab=91.68 E-value=0.37 Score=41.16 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=18.7
Q ss_pred CeEEEEEEcCCCCcHH-HHHHHHHHHH
Q 000704 159 YVYMIGVYGMAGIGKT-TLVKEVARLA 184 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKT-tLa~~v~~~~ 184 (1342)
+-+++.|.|.+|.||| |+++.+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467888999999999 4555555444
No 470
>PRK13975 thymidylate kinase; Provisional
Probab=91.68 E-value=0.16 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=23.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
.+|+|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999876
No 471
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.62 E-value=0.39 Score=51.67 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=42.1
Q ss_pred HHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHH
Q 000704 149 NDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRI 207 (1342)
Q Consensus 149 ~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 207 (1342)
.+++..+. ..+..||+|.|.+|+||+||.-.+......+.+=-.++=|.-|..++--.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsi 98 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSI 98 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccc
Confidence 34555544 356679999999999999999999998876655555555655666643333
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.60 E-value=0.15 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|.|+|++|.||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999988764
No 473
>PRK15453 phosphoribulokinase; Provisional
Probab=91.59 E-value=1 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+..+|+|.|.+|+||||+|+.+.+..+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654
No 474
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=91.56 E-value=0.48 Score=49.27 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVAR 182 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~ 182 (1342)
..+|+|+|+.|+||||.|+.+.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH
Confidence 36899999999999999998866
No 475
>PRK14530 adenylate kinase; Provisional
Probab=91.52 E-value=0.15 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988764
No 476
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=91.52 E-value=0.38 Score=61.30 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=35.5
Q ss_pred ccccchHHHHHHHHHHHc--CCCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 139 EFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 139 ~~~~gr~~~~~~l~~~l~--~~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..++|+...+..+.+.+. ...-.-|.|+|..|+|||++|+.+.+...
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~ 424 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG 424 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence 357788777777766654 22334688999999999999999987643
No 477
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.52 E-value=0.13 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.584 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++|+|+|+.|+||||||+.+.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998753
No 478
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.50 E-value=0.26 Score=51.76 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
....+|+|+|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667999999999999999999998764
No 479
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.49 E-value=4.1 Score=42.50 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=40.4
Q ss_pred cCCCcccccchHHHHHHHHHHHcC-------------CCeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 134 YNEGHEFIESRESILNDILDALRG-------------PYVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 134 ~~~~~~~~~gr~~~~~~l~~~l~~-------------~~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|......+.|-+..++++++.+.- ...+-+..+|++|.|||-+|++.+.+-.
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 444556778999999999988751 1345678999999999999999887654
No 480
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.48 E-value=0.76 Score=51.60 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=51.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------CCCChHH-----
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQT-PDLKRIRREIADQLGLNF-------CEESDSE----- 226 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~----- 226 (1342)
-..++|+|..|.|||||++.+..... -+..+..-+.+. -++.++..+....-+... ..++...
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999887543 234444555433 355666555554322110 1111111
Q ss_pred -HHHHHHHHHh-cCCcEEEEEcCCCCc
Q 000704 227 -RIMMLCNRLK-REKKILVILDDIWTS 251 (1342)
Q Consensus 227 -~~~~l~~~l~-~~k~~LlvlDdv~~~ 251 (1342)
.+-.+.+++. ++|.+|+++||+-..
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 1122333332 489999999998443
No 481
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.47 E-value=0.87 Score=49.24 Aligned_cols=53 Identities=26% Similarity=0.356 Sum_probs=35.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhC
Q 000704 159 YVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLG 216 (1342)
Q Consensus 159 ~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 216 (1342)
.-.++.|.|.+|+||||+|.++...... .-..++|++... +.+++.+. +++++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~--~~~~i~~~-~~~~g 71 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEE--SRESIIRQ-AAQFG 71 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccC--CHHHHHHH-HHHhC
Confidence 4579999999999999999987654431 234678887643 34455443 44444
No 482
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.46 E-value=0.18 Score=52.60 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
-.+++|+|..|.||||||+.+..-.+
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 35899999999999999999987665
No 483
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.44 E-value=0.28 Score=49.68 Aligned_cols=23 Identities=48% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 000704 163 IGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 163 i~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|.|.|..|+||||+++.+++..+
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999885
No 484
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.44 E-value=0.17 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 161 YMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 161 ~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
..|.|+|+.|+||||+|+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4699999999999999999998754
No 485
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=91.40 E-value=0.53 Score=58.33 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=50.8
Q ss_pred cccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCC
Q 000704 138 HEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL 217 (1342)
Q Consensus 138 ~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 217 (1342)
...++|+++.++.+...+.... .+.++|+.|+||||+|+.+.+.... ..|...+++. ....+..++++.++..++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~-~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPD-EELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCc-hhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 3457788888777776665443 5569999999999999999987652 2343333332 2233555667777766654
No 486
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=91.38 E-value=0.63 Score=52.47 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhc
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKE 186 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~ 186 (1342)
....+|+|+|.+|+||||++..+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999987653
No 487
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=91.38 E-value=0.17 Score=54.47 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=22.5
Q ss_pred EEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEec
Q 000704 165 VYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVS 199 (1342)
Q Consensus 165 I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs 199 (1342)
|+||+|.||||+++.+.+..... -..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcc
Confidence 78999999999999999988743 2334445443
No 488
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.37 E-value=0.12 Score=29.65 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=6.1
Q ss_pred CCCEEEccCCCCcccC
Q 000704 581 NLEILSLCCSDIEQLP 596 (1342)
Q Consensus 581 ~L~~L~Ls~~~i~~LP 596 (1342)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554444
No 489
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.36 E-value=0.18 Score=46.04 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVA 181 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~ 181 (1342)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 490
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.33 E-value=0.14 Score=49.94 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 000704 162 MIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 162 vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
.|+|+|+.|+|||||++.+.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999764
No 491
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.28 E-value=0.0056 Score=61.97 Aligned_cols=84 Identities=14% Similarity=0.090 Sum_probs=51.7
Q ss_pred CCCCCCCCEEEccCCCCCCC-ccccCCCCCCEEEccCCCCcccCcccCCCCcccEEeccCCCCCCccCccccCCCCCCCE
Q 000704 554 FCHLPNLESLCLDQCILGDI-AIIGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEE 632 (1342)
Q Consensus 554 i~~L~~Lr~L~L~~~~i~~l-~~i~~L~~L~~L~Ls~~~i~~LP~~i~~L~~L~~L~L~~~~~l~~lp~~~l~~L~~L~~ 632 (1342)
|.......+||++.+++-.+ ..+..++.|..||++.|.+..+|.+++.+..++++++..|+ .+..|.. +++++.++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcch
Confidence 44444555555555554444 44556666666666666666777777777777777666554 5666666 666666666
Q ss_pred EEccCCc
Q 000704 633 LYLGNTS 639 (1342)
Q Consensus 633 L~l~~~~ 639 (1342)
++..++.
T Consensus 116 ~e~k~~~ 122 (326)
T KOG0473|consen 116 NEQKKTE 122 (326)
T ss_pred hhhccCc
Confidence 6665543
No 492
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.27 E-value=0.19 Score=48.72 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
.+|+.|+|.+|+||||+.+.+-...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4799999999999999999887765
No 493
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=91.24 E-value=0.2 Score=49.61 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=25.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEG 187 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~ 187 (1342)
.+|++|+|+.|.|||||+.++....+.+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~ 29 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKAR 29 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhC
Confidence 3699999999999999999999988754
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.17 E-value=0.16 Score=53.83 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
-.+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999864
No 495
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=91.13 E-value=0.67 Score=53.91 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHHc-------C-------C----CeEEEEEEcCCCCcHHHHHHHHHHHHh
Q 000704 141 IESRESILNDILDALR-------G-------P----YVYMIGVYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~l~-------~-------~----~~~vi~I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
++|.++.++.+...+. . + ....|.++|++|+|||++|+.+.....
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 6788888887765541 1 1 124799999999999999999997654
No 496
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=91.13 E-value=0.34 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEcCCCCcHHHHHHHHHHHHh
Q 000704 165 VYGMAGIGKTTLVKEVARLAK 185 (1342)
Q Consensus 165 I~G~gG~GKTtLa~~v~~~~~ 185 (1342)
|+|++|+||||+|+.++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~ 21 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG 21 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHhcC
Confidence 789999999999999999764
No 497
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.08 E-value=1.3 Score=49.34 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQ 214 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 214 (1342)
-.++.|.|.+|+||||+|.+++....... =..++|++... +..++.+.+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEccc--CHHHHHHHHHHH
Confidence 35888999999999999999987764221 24577887655 455666665543
No 498
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.03 E-value=0.21 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 160 VYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 160 ~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999874
No 499
>COG4240 Predicted kinase [General function prediction only]
Probab=91.00 E-value=1.1 Score=45.86 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHHhcCCCcceEEEEEecCCcCHHHHHHHHHHHhCC-----CCCCCChHHHHHHHH
Q 000704 158 PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDEVVFAEVSQTPDLKRIRREIADQLGL-----NFCEESDSERIMMLC 232 (1342)
Q Consensus 158 ~~~~vi~I~G~gG~GKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~l~ 232 (1342)
.+.=+++|.|+-|.||||+|..+++....+.. ..++..++.+-+-...-.-.++++... ..++..+......+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 45569999999999999999999998875443 466666666555444444445555321 122233444555566
Q ss_pred HHHhcCC
Q 000704 233 NRLKREK 239 (1342)
Q Consensus 233 ~~l~~~k 239 (1342)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 6665544
No 500
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=90.99 E-value=0.28 Score=55.51 Aligned_cols=48 Identities=25% Similarity=0.298 Sum_probs=38.0
Q ss_pred CcccccchHHHHHHHHHHHcCCCeEEEEEEcCCCCcHHHHHHHHHHHH
Q 000704 137 GHEFIESRESILNDILDALRGPYVYMIGVYGMAGIGKTTLVKEVARLA 184 (1342)
Q Consensus 137 ~~~~~~gr~~~~~~l~~~l~~~~~~vi~I~G~gG~GKTtLa~~v~~~~ 184 (1342)
++..++|.++.++.+.-.+.+.+..-+.+.|..|.||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 355688999888877755544555669999999999999999997754
Done!