Query 000704
Match_columns 1342
No_of_seqs 501 out of 6204
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 17:36:15 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000704.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_474-477//hhsearch_pdb/000704hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 395.4 19.7 307 142-471 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 362.3 26.6 313 133-470 118-452 (1249)
3 3rgz_A Protein brassinosteroid 1.0 1 1 357.3 31.4 657 489-1332 51-764 (768)
4 3rgz_A Protein brassinosteroid 1.0 1 1 340.0 32.0 635 488-1274 77-741 (768)
5 1vt4_I APAF-1 related killer D 1.0 1 1 327.3 20.9 283 141-464 130-437 (1221)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 320.7 40.4 600 491-1240 7-620 (680)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 314.1 35.9 591 513-1271 7-620 (680)
8 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 306.0 33.5 178 490-679 13-197 (606)
9 1z6t_A APAF-1, apoptotic prote 1.0 1 1 302.7 29.2 307 135-468 120-450 (591)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 300.1 33.8 539 490-1241 14-559 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=395.38 Aligned_cols=307 Identities=17% Similarity=0.142 Sum_probs=242.2
Q ss_pred CCHHHHHHHHHHHHCC---CCEEEEEEECCCCCCHHHHHHHHHH--HHHCCCCCCEEEEEEECCCC--CHHHHHHHHHHH
Q ss_conf 2169999999999739---9959999993999808899999999--98407984329999925796--989999999998
Q 000704 142 ESRESILNDILDALRG---PYVYMIGVYGMAGIGKTTLVKEVAR--LAKEGRIFDEVVFAEVSQTP--DLKRIRREIADQ 214 (1342)
Q Consensus 142 ~gr~~~~~~l~~~L~~---~~~~vi~I~G~gG~GKTtLa~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~ 214 (1342)
+||+.++++|.++|.. ...++|+|+||||+||||||+++|+ +.+++.+|++++||++++.. ++..+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf 78417999999987251578962899986999988999999998406987466995799997898787999999999999
Q ss_pred HCCCCC--------CCCHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCC
Q ss_conf 389878--------8892999999999986278-1999991888821100007877889999189998162345542137
Q 000704 215 LGLNFC--------EESDSERIMMLCNRLKREK-KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEMH 285 (1342)
Q Consensus 215 l~~~~~--------~~~~~~~~~~~~~~l~~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~~~~~~~~ 285 (1342)
++.... ..+.......+.+.+. ++ |||||+||||+.+++ .+ + ..+||+||||||++.++.. ++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~----~-~~~gs~ilvTTR~~~v~~~-~~ 282 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RW----A-QELRLRCLVTTRDVEISNA-AS 282 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HH----H-HHTTCEEEEEESBGGGGGG-CC
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCHHH-CC----C-CCCCCEEEEECCCHHHHHH-CC
T ss_conf 853755345555331469999999999976-898489999799971441-54----3-2699889997497799997-08
Q ss_pred -CCCCEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -5740992179978899999988289999960899999999994899189999999963999268999999986201687
Q 000704 286 -CQNNYCVSVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELRFSARNF 364 (1342)
Q Consensus 286 -~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~ 364 (1342)
...+|++++|+.++||+||.++++.....+.+++++++|+++|+|+|||++++|+.++.+. .+|...+....+. .
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~---~ 358 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLES---R 358 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHH---H
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHC---C
T ss_conf 89738989998989999999987448998556899999999995998399999999844344-8999875787613---6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHCC--CCCCCC---CCHHHHH
Q ss_conf 3057888758999850558541378887-----------61138888993199999976204--543340---0099999
Q 000704 365 TGLEALLGSTIELIYNYLEGEELKLTFL-----------LCSLMKHPCDAPIMDLLKYGTGL--GLFEDI---YTMQERR 428 (1342)
Q Consensus 365 ~~~~~~~~~~l~~sy~~L~~~~lk~~fl-----------~~s~fp~~~~~~i~~li~~w~~~--g~~~~~---~~~~~~~ 428 (1342)
....+. .++.+||+.||++ +|.||+ |||+||+++.++ ++.|+|+ ||+... .+.++++
T Consensus 359 -~~~~i~-~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~ 431 (549)
T 2a5y_B 359 -GLVGVE-CITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA 431 (549)
T ss_dssp -CSSTTC-CCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH
T ss_pred -CHHHHH-HHHHCCCCCCCHH-HHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCCHHHHH
T ss_conf -477789-8975162022679-99997526522336743235608997666----5331101355002677899999999
Q ss_pred HHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999673024324699--63424353578999998620140
Q 000704 429 DRVYALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIASINL 471 (1342)
Q Consensus 429 ~~~~~~l~~L~~~~l~~~~~--~~~~~~mH~li~~~~~~~~~~~~ 471 (1342)
+ +|++|+++||++... ...+|+|||+||+||++++.+.+
T Consensus 432 ~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 D----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp H----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred H----HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf 9----9999987588367147980499967699999999988989
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=362.31 Aligned_cols=313 Identities=20% Similarity=0.246 Sum_probs=242.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHC-CC-CCCEEEEEEECCCCC--HHH
Q ss_conf 567885433216999999999973--999599999939998088999999999840-79-843299999257969--899
Q 000704 133 SYNEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GR-IFDEVVFAEVSQTPD--LKR 206 (1342)
Q Consensus 133 ~~~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~-~~-~F~~~~wv~~~~~~~--~~~ 206 (1342)
..|.....|+||++++++|.++|. +++.++|+|+||||+||||||+++|++.+. .. .++.++|+++++..+ ...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCCCCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHHHH
T ss_conf 97999864125799999999998613588777999918988888999998607567886278817999978857267999
Q ss_pred HHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHH
Q ss_conf 99999998389878-----8892999999999986278--1999991888821100007877889999189998162345
Q 000704 207 IRREIADQLGLNFC-----EESDSERIMMLCNRLKREK--KILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDV 279 (1342)
Q Consensus 207 ~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l~~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~~ 279 (1342)
.+..++..+..... ..........+...+. ++ |+||||||||+..+|+.+ .+|++||||||++.+
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLML-RKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTS-SSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH-CCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHH
T ss_conf 99999998655303334788777899999999973-5678789999567997788763-------689789999277899
Q ss_pred HHHHCCCCCCEEECC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 542137574099217-9978899999988289999960899999999994899189999999963999268999999986
Q 000704 280 LVSEMHCQNNYCVSV-LNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1342)
Q Consensus 280 ~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1342)
+....+....+.+.+ |+.+++++||...++.. .+...+++++|+++|+|+||||+++|++|+.+. ..|+.+++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~ 346 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQ 346 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHH
T ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCC--HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHH
T ss_conf 876348843798258888788999999865798--134838899999984997799999999862480-57999999986
Q ss_pred HCCCCC------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 201687------30578887589998505585413788876113888899319999997620454334000999999999
Q 000704 359 FSARNF------TGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1342)
Q Consensus 359 ~~~~~~------~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1342)
...+.. ...+.+. .++.+||+.|+++ .|.||+|||+||+++.++...++.+|.+++ + ...
T Consensus 347 ~~~~~~~~~~~~~~~~~~~-~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~----~~~ 412 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------E----EVE 412 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHH-HHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------H----HHH
T ss_pred HHHHHHCCCCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHHCCCCCCCEECHHHHHHHHCCCH--------H----HHH
T ss_conf 5044303465564467799-9999899867999-999999728137997518999998858988--------8----999
Q ss_pred HHHHHHHHCCCCCCCCC--CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99996730243246996--342435357899999862014
Q 000704 433 ALVRGLKDTCLLHDDDT--ADWFSMLGFVRNVAISIASIN 470 (1342)
Q Consensus 433 ~~l~~L~~~~l~~~~~~--~~~~~mH~li~~~~~~~~~~~ 470 (1342)
+++++|++++|++.... ..+|+||++||+|++..+.++
T Consensus 413 ~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 413 DILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 9999997446338963798118996689999987450678
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=357.30 Aligned_cols=657 Identities=16% Similarity=0.058 Sum_probs=303.5
Q ss_pred CCEEEEECCCCCCC----CCCCC-CCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCC-CCCC--CCCCCCCC
Q ss_conf 71199802468899----89867-89973189803899998888034459999539995488787-6782--37999999
Q 000704 489 NCIAIFLHDINTGE----LPEGL-EYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLL-TLPS--SFCHLPNL 560 (1342)
Q Consensus 489 ~~r~l~l~~~~~~~----l~~~~-~~~~L~~L~l~~~~~~~~ip~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~L 560 (1342)
+++.+.+++..+.. ++..+ .+++|+.++++.+.. ..+|.. |..+++|++|+|++|.+. .+|. .++.+.+|
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~-~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCE-EECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCC-CCCCHH-HCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCC
T ss_conf 278987789986775576696573168022467868886-787033-245788998989898578707896787278899
Q ss_pred CEEECCCCCCCCC--CC-CCCCCCCCEEECCCCCCCCC-CCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 9997469888897--45-46898899898569988305-712---28977446992558888985390102799998899
Q 000704 561 ESLCLDQCILGDI--AI-IGNLKNLEILSLCCSDIEQL-PRE---IGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEEL 633 (1342)
Q Consensus 561 r~L~L~~~~i~~l--~~-i~~L~~L~~L~L~~~~i~~L-p~~---i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 633 (1342)
++|++++|.+... .. +.++.+|++|++++|.+... |.. +.++++|++|++++|. +..... ++.+++|++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L 205 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLEFL 205 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCCEE
T ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCC-CCCCCC--CCCCCCCCEE
T ss_conf 9898968826774797785638899989897983588587155664358988989897880-346578--4547868989
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCEEECC
Q ss_conf 84599664322334433577792520399998899932368978990444103452589982312899998886313215
Q 000704 634 YLGNTSVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLK 713 (1342)
Q Consensus 634 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~ 713 (1342)
++++|.+.. .+..++.+++|+.|+++++.....
T Consensus 206 ~Ls~n~l~~------------~~~~l~~l~~L~~L~Ls~n~l~~~----------------------------------- 238 (768)
T 3rgz_A 206 DVSSNNFST------------GIPFLGDCSALQHLDISGNKLSGD----------------------------------- 238 (768)
T ss_dssp ECCSSCCCS------------CCCBCTTCCSCCEEECCSSCCCSC-----------------------------------
T ss_pred ECCCCCCCC------------CCCCCCCCCCCCEEECCCCCCCCC-----------------------------------
T ss_conf 892882788------------771112699999897948858781-----------------------------------
Q ss_pred CCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 99754468999561200150136778821100112679864235010333676378226866323564544355632343
Q 000704 714 LPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNL 793 (1342)
Q Consensus 714 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~ 793 (1342)
.+..+..+++|+.|++.++..... .+.. .+++|++|.+.++.....++... ...+++|+.|.+.++
T Consensus 239 ------~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~---~l~~L~~L~L~~n~l~~~ip~~~----~~~~~~L~~L~Ls~n 304 (768)
T 3rgz_A 239 ------FSRAISTCTELKLLNISSNQFVGP-IPPL---PLKSLQYLSLAENKFTGEIPDFL----SGACDTLTGLDLSGN 304 (768)
T ss_dssp ------HHHHTTTCSSCCEEECCSSCCEES-CCCC---CCTTCCEEECCSSEEEESCCCCS----CTTCTTCSEEECCSS
T ss_pred ------CCHHHHCCCCCCEEECCCCCCCCC-CCCC---CCCCCCEEECCCCCCCCCCCHHH----HHHCCCCCEEECCCC
T ss_conf ------657774488889898988866571-6724---36878989791785577258888----844686889989689
Q ss_pred CCCCCHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 33100314656400124411999950898433364368721687419998105323667502898877887665322354
Q 000704 794 IHLEKICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQ 873 (1342)
Q Consensus 794 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 873 (1342)
.-...+ ....+.+++|+.|.+.+|.-...++. ..+..+++|++|++++|.-...++. .+..++
T Consensus 305 ~l~~~~---p~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~------------~l~~l~- 367 (768)
T 3rgz_A 305 HFYGAV---PPFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPE------------SLTNLS- 367 (768)
T ss_dssp EEEECC---CGGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCT------------THHHHT-
T ss_pred CCCCCC---CHHHHCCCCCCEEECCCCCCCCCCCH-HHHHCCCCCCEEECCCCCCCCCCCH------------HHHHHH-
T ss_conf 677842---36775587766778978852573797-8872488887884847843762309------------898632-
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 44675477777221123657777789998887643234654412023323332356899888877777759988146563
Q 000704 874 LRSLILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKI 953 (1342)
Q Consensus 874 L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 953 (1342)
++|+.|++.++.+......... ...+++|+.|.+.+|. +
T Consensus 368 --------------------------------------~~L~~L~Ls~N~l~~~~~~~~~--~~~~~~L~~L~L~~n~-l 406 (768)
T 3rgz_A 368 --------------------------------------ASLLTLDLSSNNFSGPILPNLC--QNPKNTLQELYLQNNG-F 406 (768)
T ss_dssp --------------------------------------TTCSEEECCSSEEEEECCTTTT--CSTTCCCCEEECCSSE-E
T ss_pred --------------------------------------CCCCEEECCCCCCCCCCCHHHH--HCCCCCCCEEECCCCC-C
T ss_conf --------------------------------------2771998627874787676665--3324776189897784-6
Q ss_pred CCCCCHHHHHHCCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 323661378401357579992133332-0012334545543001576450011468654410245222247765256750
Q 000704 954 KYLFPSSIVRNFVQLQHLEICHCTVLE-EIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVY 1032 (1342)
Q Consensus 954 ~~l~~~~~~~~l~~L~~L~i~~c~~L~-~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~ 1032 (1342)
+... +..+..+++|+.|++++|. +. .++.. ...+++|+.|++++|.....++.... .+++|+.|++.
T Consensus 407 ~~~~-p~~l~~l~~L~~L~Ls~N~-l~~~~p~~--------l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~ 474 (768)
T 3rgz_A 407 TGKI-PPTLSNCSELVSLHLSFNY-LSGTIPSS--------LGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILD 474 (768)
T ss_dssp EEEC-CGGGGGCTTCCEEECCSSE-EESCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECC
T ss_pred CCCC-CHHHHCCCCCCEEECCCCC-CCCCCCHH--------HHCCCCCCEEECCCCCCCCCCCHHHC--CCCCCEEEEEC
T ss_conf 5424-8777568987989895884-66854677--------74499889898978815471897882--87773299901
Q ss_pred CCCCEEEECCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 68721121234456887400001466533202555662355113541465642002477874334554089983189998
Q 000704 1033 GCNKVKIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDN 1112 (1342)
Q Consensus 1033 ~C~~L~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~ 1112 (1342)
+|.-...++.. ...+++|+.|++++|.++...+..+ +.+++|+.|++++|.+..
T Consensus 475 ~N~l~~~~p~~------------------------l~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 475 FNDLTGEIPSG------------------------LSNCTNLNWISLSNNRLTGEIPKWI--GRLENLAILKLSNNSFSG 528 (768)
T ss_dssp SSCCCSCCCGG------------------------GGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCEE
T ss_pred CCCCCCCCCHH------------------------HHCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCEEECCCCCCCC
T ss_conf 99513758878------------------------8169989989753995189687688--568999989897894337
Q ss_pred CCHHHHHHCCCCCEEEEEEECEE-EECCCHH----------------------------------------HHHHHCCCC
Q ss_conf 73778843288637999910003-5202413----------------------------------------556203444
Q 000704 1113 FPICFLQYFKNLEKLELRWSSYK-QIFSYKE----------------------------------------AEKHAGKLT 1151 (1342)
Q Consensus 1113 ~~~~~l~~l~~L~~L~i~~~~l~-~l~~~~~----------------------------------------~~~~~~~l~ 1151 (1342)
..+..+..+++|+.|+++.+.+. .++..-. .......++
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 608 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGG
T ss_pred CCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 48877708898998989888468827957860421223201345421111344432222332221001355632320023
Q ss_pred CCCEEEECCCCCCCHHHCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCC
Q ss_conf 63455607788864111259765021101221456315675545789854476348998457898544454656202455
Q 000704 1152 HIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQL 1231 (1342)
Q Consensus 1152 ~L~~L~l~~c~~l~~l~~~~~~~~~~l~sL~~L~l~~c~~l~~lp~~~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL 1231 (1342)
.+..+++... .+....+..+..+++|+.|+++++.....+|..++.+++|+.|++++ ++++...+. .+..+++|
T Consensus 609 ~~~~~~l~~~----~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~-N~l~g~ip~-~l~~L~~L 682 (768)
T 3rgz_A 609 TRNPCNITSR----VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH-NDISGSIPD-EVGDLRGL 682 (768)
T ss_dssp GTCCSCTTSC----EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS-SCCCSCCCG-GGGGCTTC
T ss_pred CCCCCCCCCC----EECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC-CCCCCCCCH-HHHCCCCC
T ss_conf 2110011331----00462743340335665797858801555877884141578784868-803887896-78477789
Q ss_pred CEEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 58977155321022037776554421023212222111335544506853100898554886048774446878878965
Q 000704 1232 MQLRIDGCKMITEIISNEGDVAEDEIVFSKLKWLSLENLESLTSFYSGNYTFKFPCLEDLFVIECPNMKIFSTRESNTPK 1311 (1342)
Q Consensus 1232 ~~L~i~~c~~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~sL~~L~i~~C~~l~~~~~~~~~~~~ 1311 (1342)
+.|++++|..-..+|. .+..+++|+.|++++++--..+|.+. ++.++....+.++|.+.-.|.
T Consensus 683 ~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~ls~N~l~g~iP~~~---~~~~~~~~~~~gN~~Lcg~~l------- 745 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQ-------AMSALTMLTEIDLSNNNLSGPIPEMG---QFETFPPAKFLNNPGLCGYPL------- 745 (768)
T ss_dssp CEEECCSSCCEECCCG-------GGGGCCCCSEEECCSSEEEEECCSSS---SGGGSCGGGGCSCTEEESTTS-------
T ss_pred CEEECCCCCCCCCCCH-------HHHCCCCCCEEECCCCCCCCCCCCCH---HHCCCCHHHHCCCCHHCCCCC-------
T ss_conf 9898978802386886-------77578878978796881556089960---102489777569832108877-------
Q ss_pred CEEEEECCCCCCCCCCCCHHH
Q ss_conf 237884148886533599489
Q 000704 1312 LQEVRQNWGLDKGCWEGGLNA 1332 (1342)
Q Consensus 1312 l~~~~~~~~~~~~~~~~~~~~ 1332 (1342)
. -|....++.|++..+.++
T Consensus 746 -~-~C~~~~~~~~~~~~~~~~ 764 (768)
T 3rgz_A 746 -P-RCDPSNADGYAHHQRSHH 764 (768)
T ss_dssp -C-CCCSCC------------
T ss_pred -C-CCCCCCCCCCCCCCCCCC
T ss_conf -6-788876688898887656
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=340.00 Aligned_cols=635 Identities=16% Similarity=0.062 Sum_probs=311.0
Q ss_pred CCCEEEEECCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCH-HHHCCCCCCCEEEECCCCCC-CCCCCC-CCCCCCCEE
Q ss_conf 47119980246889989867-899731898038999988880-34459999539995488787-678237-999999999
Q 000704 488 KNCIAIFLHDINTGELPEGL-EYPHLTSLCMNPKDPFLHIPD-NFFAGMPKLRVLVLTRMKLL-TLPSSF-CHLPNLESL 563 (1342)
Q Consensus 488 ~~~r~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~ip~-~~~~~l~~Lr~L~L~~~~i~-~lp~~i-~~L~~Lr~L 563 (1342)
+.++.+.+..+.+..+|..+ .+++|++|++++|.....+|. ..+.++++|++|++++|.+. ..|..+ ..+.+|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 80224678688867870332457889989898985787078967872788999898968826774797785638899989
Q ss_pred ECCCCCCCCC--CC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 7469888897--45---468988998985699883057122897744699255888898539010279999889984599
Q 000704 564 CLDQCILGDI--AI---IGNLKNLEILSLCCSDIEQLPREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNT 638 (1342)
Q Consensus 564 ~L~~~~i~~l--~~---i~~L~~L~~L~L~~~~i~~Lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 638 (1342)
++++|.+... .. ++++.+|++|++++|.+.... .+..+++|++|++++|. +...++. ++++++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRCVNLEFLDVSSNN-FSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC-BCTTCTTCCEEECCSSC-CCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCEEECCCCC-CCCCCCC-CCCCCCCCEEECCCC
T ss_conf 89798358858715566435898898989788034657-84547868989892882-7887711-126999998979488
Q ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 66432233443357779252039999889993236897899044410345258998231289999888631321599754
Q 000704 639 SVEWEFEGLNLERNNASLQELSILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNI 718 (1342)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 718 (1342)
.+. ...+..+..+++|+.|+++.+.........
T Consensus 234 ~l~-----------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~------------------------------------ 266 (768)
T 3rgz_A 234 KLS-----------GDFSRAISTCTELKLLNISSNQFVGPIPPL------------------------------------ 266 (768)
T ss_dssp CCC-----------SCHHHHTTTCSSCCEEECCSSCCEESCCCC------------------------------------
T ss_pred CCC-----------CCCCHHHHCCCCCCEEECCCCCCCCCCCCC------------------------------------
T ss_conf 587-----------816577744888898989888665716724------------------------------------
Q ss_pred CHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 46899956120015013677882110011267986423501033367637822686632356454435563234333100
Q 000704 719 YLDEIIMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEK 798 (1342)
Q Consensus 719 ~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 798 (1342)
.+++|+.|++.++.........+ ...+++|++|++.++.....++. ....+++|+.|.+.++.-...
T Consensus 267 -------~l~~L~~L~L~~n~l~~~ip~~~-~~~~~~L~~L~Ls~n~l~~~~p~-----~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 267 -------PLKSLQYLSLAENKFTGEIPDFL-SGACDTLTGLDLSGNHFYGAVPP-----FFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp -------CCTTCCEEECCSSEEEESCCCCS-CTTCTTCSEEECCSSEEEECCCG-----GGGGCTTCCEEECCSSEEEEE
T ss_pred -------CCCCCCEEECCCCCCCCCCCHHH-HHHCCCCCEEECCCCCCCCCCCH-----HHHCCCCCCEEECCCCCCCCC
T ss_conf -------36878989791785577258888-84468688998968967784236-----775587766778978852573
Q ss_pred HHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCC-CCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 31465640012441199995089843336436872168-74199981053236675028988778876653223544467
Q 000704 799 ICDGLLTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLP-QLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSL 877 (1342)
Q Consensus 799 ~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 877 (1342)
+. ......+++|+.|.+.+|.-...+|. .+..++ +|+.|++++|.-...++... ....+++|+.|
T Consensus 334 ip--~~~l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~~L~~L~Ls~N~l~~~~~~~~----------~~~~~~~L~~L 399 (768)
T 3rgz_A 334 LP--MDTLLKMRGLKVLDLSFNEFSGELPE--SLTNLSASLLTLDLSSNNFSGPILPNL----------CQNPKNTLQEL 399 (768)
T ss_dssp CC--HHHHTTCTTCCEEECCSSEEEECCCT--THHHHTTTCSEEECCSSEEEEECCTTT----------TCSTTCCCCEE
T ss_pred CC--HHHHHCCCCCCEEECCCCCCCCCCCH--HHHHHHCCCCEEECCCCCCCCCCCHHH----------HHCCCCCCCEE
T ss_conf 79--78872488887884847843762309--898632277199862787478767666----------53324776189
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 54777772211236577777899988876432346544120233233323568998888777777599881465633236
Q 000704 878 ILKFLPQLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLF 957 (1342)
Q Consensus 878 ~l~~c~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~ 957 (1342)
.+.++.-...++ .....+++|+.|++.++.+....... ...+++|+.|.+.+|. +....
T Consensus 400 ~L~~n~l~~~~p----------------~~l~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~~L~~L~L~~n~-l~~~~ 458 (768)
T 3rgz_A 400 YLQNNGFTGKIP----------------PTLSNCSELVSLHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNM-LEGEI 458 (768)
T ss_dssp ECCSSEEEEECC----------------GGGGGCTTCCEEECCSSEEESCCCGG----GGGCTTCCEEECCSSC-CCSCC
T ss_pred ECCCCCCCCCCC----------------HHHHCCCCCCEEECCCCCCCCCCCHH----HHCCCCCCEEECCCCC-CCCCC
T ss_conf 897784654248----------------77756898798989588466854677----7449988989897881-54718
Q ss_pred CHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCE
Q ss_conf 61378401357579992133332001233454554300157645001146865441024522224776525675068721
Q 000704 958 PSSIVRNFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKV 1037 (1342)
Q Consensus 958 ~~~~~~~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L 1037 (1342)
| ..+..+++|+.|++++|.-...++.. ...+++|+.|++++|.-...++.... .+++|+.|++.+|.-.
T Consensus 459 p-~~~~~l~~L~~L~L~~N~l~~~~p~~--------l~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 459 P-QELMYVKTLETLILDFNDLTGEIPSG--------LSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFS 527 (768)
T ss_dssp C-GGGGGCTTCCEEECCSSCCCSCCCGG--------GGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCE
T ss_pred C-HHHCCCCCCEEEEECCCCCCCCCCHH--------HHCCCCCCEEECCCCCCCCCCCHHHH--CCCCCCEEECCCCCCC
T ss_conf 9-78828777329990199513758878--------81699899897539951896876885--6899998989789433
Q ss_pred EEECCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCC-EECCCCCCCCC------CCCCCEEEEECCCC
Q ss_conf 121234456887400001466533202555662355113541465642-00247787433------45540899831899
Q 000704 1038 KIFTSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDIT-MIREGRLPTYL------FQNLKILEVVNDKS 1110 (1342)
Q Consensus 1038 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~------l~~L~~L~l~~c~~ 1110 (1342)
..+|.. ...+++|+.|++++|.++ .++...+.... ....+...+.++..
T Consensus 528 ~~~p~~------------------------l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 528 GNIPAE------------------------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp EECCGG------------------------GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CCCCHH------------------------HCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCC
T ss_conf 748877------------------------70889899898988846882795786042122320134542111134443
Q ss_pred -------------CCCCHHHHHHCCCCCEEEEEEECEEEECCCHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCCHH
Q ss_conf -------------9873778843288637999910003520241355620344463455607788864111259765021
Q 000704 1111 -------------DNFPICFLQYFKNLEKLELRWSSYKQIFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSV 1177 (1342)
Q Consensus 1111 -------------~~~~~~~l~~l~~L~~L~i~~~~l~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 1177 (1342)
.......+..+..+..+.++.+.+....+ ..+..+++|+.|+++++.--..+ |..++.
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~-----~~~~~l~~L~~LdLs~N~l~g~i----p~~l~~ 654 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS-----PTFDNNGSMMFLDMSYNMLSGYI----PKEIGS 654 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC-----CSCSSSBCCCEEECCSSCCBSCC----CGGGGG
T ss_pred CCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCC-----HHHHCCCCCCEEECCCCCCCCCC----CHHHHC
T ss_conf 222233222100135563232002321100113310046274-----33403356657978588015558----778841
Q ss_pred HCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCCC
Q ss_conf 10122145631567554578985447634899845789854445465620245558977155321022037776554421
Q 000704 1178 VENLEMLEVWWCDNLVNLVPSSPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEI 1257 (1342)
Q Consensus 1178 l~sL~~L~l~~c~~l~~lp~~~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~ 1257 (1342)
+++|+.|+++++.....+|..++.+++|+.|++++ ++++...+ ..+..+++|+.|++++|+.-..+|+..
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~-N~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~-------- 724 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMG-------- 724 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEECCC-GGGGGCCCCSEEECCSSEEEEECCSSS--------
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC-CCCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCH--------
T ss_conf 41578784868803887896784777899898978-80238688-677578878978796881556089960--------
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 02321222211133554
Q 000704 1258 VFSKLKWLSLENLESLT 1274 (1342)
Q Consensus 1258 ~l~~L~~L~l~~c~~L~ 1274 (1342)
.+..+....+.+++.|.
T Consensus 725 ~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 725 QFETFPPAKFLNNPGLC 741 (768)
T ss_dssp SGGGSCGGGGCSCTEEE
T ss_pred HHCCCCHHHHCCCCHHC
T ss_conf 10248977756983210
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=327.35 Aligned_cols=283 Identities=18% Similarity=0.151 Sum_probs=218.4
Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE-EEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 32169999999999739-99599999939998088999999999840798432-99999257969899999999983898
Q 000704 141 IESRESILNDILDALRG-PYVYMIGVYGMAGIGKTTLVKEVARLAKEGRIFDE-VVFAEVSQTPDLKRIRREIADQLGLN 218 (1342)
Q Consensus 141 ~~gr~~~~~~l~~~L~~-~~~~vi~I~G~gG~GKTtLa~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~ 218 (1342)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..++..++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 78928999999999743589718999769996679999999971498874899389998289999999999999998622
Q ss_pred ---CCC-----CCHH----HHHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHC
Q ss_conf ---788-----8929----99999999986--278199999188882110000787788999918999816234554213
Q 000704 219 ---FCE-----ESDS----ERIMMLCNRLK--REKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLVSEM 284 (1342)
Q Consensus 219 ---~~~-----~~~~----~~~~~~~~~l~--~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~~~~~~~ 284 (1342)
... .... .....+...+. .++|+||||||||+.+.|+.+. +||+||||||++.++.. +
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l 281 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-L 281 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-H
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHH-C
T ss_conf 721022001346799999999999999998504788799871868189998647-------98299994437379986-6
Q ss_pred CCCCCEEEC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC--HHHHHHHHHH
Q ss_conf 757409921------79978899999988289999960899999999994899189999999963999--2689999999
Q 000704 285 HCQNNYCVS------VLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKP--LFVWKKALQE 356 (1342)
Q Consensus 285 ~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~--~~~w~~~l~~ 356 (1342)
.....++++ +|+.+|||+||.++.+.. . .++..+ .|+|+||||+++|+.|+.+. ...|+..
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~--~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR--P---QDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC--T---TTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC--H---HHHHHH---HHCCCHHHHHHHHHHHHCCCCCHHHHHCC---
T ss_conf 897089946865568969999999999974998--8---999999---96989999999999984889979998669---
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 8620168730578887589998505585413-788876113888899319999997620454334000999999999999
Q 000704 357 LRFSARNFTGLEALLGSTIELIYNYLEGEEL-KLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVYALV 435 (1342)
Q Consensus 357 l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~l-k~~fl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~~~l 435 (1342)
....+. .++.+||+.|+++ . |+||+|||+||+++.+..+.++.+|+++|. ++ ...++
T Consensus 351 ---------~~~~I~-aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed----Ae~~L 408 (1221)
T 1vt4_I 351 ---------NCDKLT-TIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD----VMVVV 408 (1221)
T ss_dssp ---------SCHHHH-HHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH----HHHHH
T ss_pred ---------CHHHHH-HHHHHHHHHCCHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCH-------HH----HHHHH
T ss_conf ---------861899-9999999848899-99999999717799998779999987667788-------99----99999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 96730243246996342435357899999
Q 000704 436 RGLKDTCLLHDDDTADWFSMLGFVRNVAI 464 (1342)
Q Consensus 436 ~~L~~~~l~~~~~~~~~~~mH~li~~~~~ 464 (1342)
++|+++||++..+...+|+|||++++++.
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHCCEEEECCCCEEEEHHHHHHHHC
T ss_conf 99996198898689998986099999856
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=320.67 Aligned_cols=600 Identities=18% Similarity=0.178 Sum_probs=308.9
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCCC
Q ss_conf 199802468899898678997318980389999888803445999953999548878767-8237999999999746988
Q 000704 491 IAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQCI 569 (1342)
Q Consensus 491 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 569 (1342)
+.+..++..+..+|..+. +++++|++++|.. ..++...|.++++|++|+++++.+..+ |..+..+.+|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCC-CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCCCCCCC-CCCCEEECCCCCC-CCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCC
T ss_conf 744877798052641248-8876888989977-87597887178767588788996485697787406676888899985
Q ss_pred CCCCC--CCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 88974--5468988998985699883057-12289774469925588889853901027999988998459966432233
Q 000704 570 LGDIA--IIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEG 646 (1342)
Q Consensus 570 i~~l~--~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 646 (1342)
+..++ .|+++.+|++|++++|.+..+| ..++++++|++|++++|. +...+...++++++|++|++++|.+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----- 158 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ----- 158 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC-----
T ss_pred CCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCHHHCCCCCCCEEECCCCCCC-----
T ss_conf 675685453038888989898996685396674156788889898995-24667211124556777974588436-----
Q ss_pred CCCCCCCCCHHHHC--CCCCCCEEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHH
Q ss_conf 44335777925203--9999889993236897899044410345258998231289999888631321599754468999
Q 000704 647 LNLERNNASLQELS--ILSHLTTLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEII 724 (1342)
Q Consensus 647 ~~~~~~~~~~~~l~--~L~~L~~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 724 (1342)
......+. .+++|+.|+++.+.....+...+ .
T Consensus 159 ------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~--------------------------------------- 192 (680)
T 1ziw_A 159 ------ALKSEELDIFANSSLKKLELSSNQIKEFSPGCF-H--------------------------------------- 192 (680)
T ss_dssp ------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG-G---------------------------------------
T ss_pred ------CCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHH-H---------------------------------------
T ss_conf ------529788624466632179888982565581555-3---------------------------------------
Q ss_pred HHHCCCCEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCC
Q ss_conf 5612001501367788211001126-798642350103336763782268663235645443556323433310031465
Q 000704 725 MNLKEIEELYLDEVPGIENVLYELD-RKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGL 803 (1342)
Q Consensus 725 ~~l~~L~~L~L~~~~~~~~~l~~l~-~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 803 (1342)
.+++|+.|.+.++.........+. ....++|+.|.+.++......+. ++.....++|+.|.+.++.- ..+ ..
T Consensus 193 -~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~---~~~~l~~~~L~~L~Ls~n~l-~~~--~~ 265 (680)
T 1ziw_A 193 -AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT---TFLGLKWTNLTMLDLSYNNL-NVV--GN 265 (680)
T ss_dssp -GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT---TTGGGGGSCCCEEECTTSCC-CEE--CT
T ss_pred -HHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHH---HHHCCCCCCCCEEECCCCCC-CCC--CC
T ss_conf -223445543056646805677787775315100887457743646866---75146767788877878876-756--80
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 64001244119999508984333643687216874199981053236675028988778876653223544467547777
Q 000704 804 LTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLP 883 (1342)
Q Consensus 804 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 883 (1342)
...+.+++|+.|.+.++ .+..+++ ..+..+++|+.+++.++..-..+. +...|
T Consensus 266 ~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~-------------------------~~~lp 318 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYN-NIQHLFS-HSLHGLFNVRYLNLKRSFTKQSIS-------------------------LASLP 318 (680)
T ss_dssp TTTTTCTTCCEEECCSC-CBSEECT-TTTTTCTTCCEEECTTCBCCC-------------------------------CC
T ss_pred CCCCCCCCCCEEECCCC-CCCCCCH-HHHCCCCCCCEEECCCHHHHCCCC-------------------------CCCCC
T ss_conf 21167410568557788-5676586-562678885577363313213333-------------------------35545
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCCCCHHHH
Q ss_conf 722112365777778999888764323465441202332333235689988887777775998814656-3323661378
Q 000704 884 QLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEK-IKYLFPSSIV 962 (1342)
Q Consensus 884 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~-L~~l~~~~~~ 962 (1342)
.+... ....+++|+.|++.++.+..+..... ..+++|++|++++|.- +..+ +...+
T Consensus 319 ~i~~~------------------~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~Ls~n~~~~~~l-~~~~f 375 (680)
T 1ziw_A 319 KIDDF------------------SFQWLKCLEHLNMEDNDIPGIKSNMF----TGLINLKYLSLSNSFTSLRTL-TNETF 375 (680)
T ss_dssp EECTT------------------TTTTCTTCCEEECCSCCBCCCCTTTT----TTCTTCCEEECTTCBSCCCEE-CTTTT
T ss_pred CCCHH------------------HCCCCCCCCEEECCCCCCCCCCHHHH----CCCCCCCEEECCCCCHHHHHC-CHHHH
T ss_conf 43865------------------62467778888798982687885574----065687289887980144323-53220
Q ss_pred HH--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEE
Q ss_conf 40--1357579992133332001233454554300157645001146865441024522224776525675068721121
Q 000704 963 RN--FVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIF 1040 (1342)
Q Consensus 963 ~~--l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l 1040 (1342)
.. .++|+.|++++|. +..+... ....+++|+.|+++++.....++.... ..+++|+.|++.+|.-. .+
T Consensus 376 ~~~~~~~L~~L~L~~n~-l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~-~~ 445 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNK-ISKIESD-------AFSWLGHLEVLDLGLNEIGQELTGQEW-RGLENIFEIYLSYNKYL-QL 445 (680)
T ss_dssp GGGTTSCCCEEECTTSC-CCEECTT-------TTTTCTTCCEEECCSSCCEEECCSGGG-TTCTTCCEEECCSCSEE-EC
T ss_pred CCCCCCCCCEEECCCCC-CCEECHH-------HHHCCCCCCEEECCCCCCCCCCCCCCC-CCCCCCCEEECCCCCCC-EE
T ss_conf 24556867668899997-7767754-------420778888886778757543575532-57546127844899754-22
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 23445688740000146653320255566235511354146564200247787433455408998318999873778843
Q 000704 1041 TSEFLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQY 1120 (1342)
Q Consensus 1041 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~ 1120 (1342)
+.. ....+++|+.|++++|.+..+.........+++|+.|++++|.+..++...+.+
T Consensus 446 ~~~-----------------------~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 446 TRN-----------------------SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp CTT-----------------------TTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CHH-----------------------HHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 764-----------------------550075431011014644225667764555787899989999877679446345
Q ss_pred CCCCCEEEEEEECEEEECCCHH---HHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHCCCCEEEEECCCCCCCCCC
Q ss_conf 2886379999100035202413---5562034446345560778886411125976502110122145631567554578
Q 000704 1121 FKNLEKLELRWSSYKQIFSYKE---AEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVP 1197 (1342)
Q Consensus 1121 l~~L~~L~i~~~~l~~l~~~~~---~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~sL~~L~l~~c~~l~~lp~ 1197 (1342)
+++|+.|+++.+.+..++.... ....+..+++|+.|+++++ .+..++. ..+..+++|+.|+++++. ++.+|.
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~---~~~~~l~~L~~L~Ls~N~-l~~l~~ 577 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV---EVFKDLFELKIIDLGLNN-LNTLPA 577 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred CCCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCC-CCCCCCH---HHCCCCCCCCEEECCCCC-CCCCCH
T ss_conf 53468885889973000000046774142337998888889999-7887797---773466675223899997-776797
Q ss_pred C-CCCCCCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCC
Q ss_conf 9-854476348998457898544454656202455589771553
Q 000704 1198 S-SPSFRNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCK 1240 (1342)
Q Consensus 1198 ~-~~~l~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~ 1240 (1342)
. +..+++|+.|++++ ++++.+++..+...+++|+.|++++|+
T Consensus 578 ~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 578 SVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred HHHCCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCCEEECCCCC
T ss_conf 6837898888898999-968705966830114665779831897
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=314.07 Aligned_cols=591 Identities=17% Similarity=0.140 Sum_probs=330.9
Q ss_pred CEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCC-CCCCCCCCCEEECCCCCCCCC--CCCCCCCCCCEEECCC
Q ss_conf 1898038999988880344599995399954887876782-379999999997469888897--4546898899898569
Q 000704 513 TSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTLPS-SFCHLPNLESLCLDQCILGDI--AIIGNLKNLEILSLCC 589 (1342)
Q Consensus 513 ~~L~l~~~~~~~~ip~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~Lr~L~L~~~~i~~l--~~i~~L~~L~~L~L~~ 589 (1342)
++++++++.. ..+|..+ .+++++|+++++.+..+|. .|..+.+|++|++++|.+..+ ..++++.+|++|++++
T Consensus 7 ~~~~cs~~~L-~~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKL-TQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCC-SSCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CEEECCCCCC-CCCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCC
T ss_conf 7448777980-5264124---88876888989977875978871787675887889964856977874066768888999
Q ss_pred CCCCCCCC-CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEE
Q ss_conf 98830571-22897744699255888898539010279999889984599664322334433577792520399998899
Q 000704 590 SDIEQLPR-EIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFEGLNLERNNASLQELSILSHLTTL 668 (1342)
Q Consensus 590 ~~i~~Lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 668 (1342)
|.+..+|. .|+++++|++|++++|. +..++...++++++|++|++++|.+. ...+..+..+++|+.|
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS-----------STKLGTQVQLENLQEL 150 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS-----------CCCCCSSSCCTTCCEE
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCCEEECCCCCCC-----------CCCCHHHCCCCCCCEE
T ss_conf 85675685453038888989898996-68539667415678888989899524-----------6672111245567779
Q ss_pred EEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCC
Q ss_conf 93236897899044410345258998231289999888631321599754468999561200150136778821100112
Q 000704 669 EIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEIIMNLKEIEELYLDEVPGIENVLYEL 748 (1342)
Q Consensus 669 ~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 748 (1342)
+++.+.....+..... ...+++|+.|++.++.........+
T Consensus 151 ~L~~n~l~~~~~~~~~---------------------------------------~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 151 LLSNNKIQALKSEELD---------------------------------------IFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp ECCSSCCCCBCHHHHG---------------------------------------GGTTCEESEEECTTCCCCCBCTTGG
T ss_pred ECCCCCCCCCCHHHHH---------------------------------------CCCCCCCCEEECCCCCCCCCCHHHH
T ss_conf 7458843652978862---------------------------------------4466632179888982565581555
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCC-CCCCCCCCCEEECCCCCCCCCHHCCCCCCCCC--CCCEEEEEEECCCCCC
Q ss_conf 67986423501033367637822686632-35645443556323433310031465640012--4411999950898433
Q 000704 749 DRKGLPALKHLRAQNNPFILCIVDSMAQV-RCNAFPVLESMFLHNLIHLEKICDGLLTAEFF--SKLRIIKVRNCDKLKN 825 (1342)
Q Consensus 749 ~~~~l~~L~~L~l~~~~~~~~i~~~~~~~-~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~--~~L~~L~l~~c~~L~~ 825 (1342)
..+++|+.+.+.++...... .... .....++|+.|.+.++.- ...... ....+ ++|+.|.+.+|. +..
T Consensus 192 --~~l~~L~~L~l~~~~l~~~~---~~~~~~~l~~~~L~~L~L~~n~l-~~~~~~--~~~~l~~~~L~~L~Ls~n~-l~~ 262 (680)
T 1ziw_A 192 --HAIGRLFGLFLNNVQLGPSL---TEKLCLELANTSIRNLSLSNSQL-STTSNT--TFLGLKWTNLTMLDLSYNN-LNV 262 (680)
T ss_dssp --GGSSEECEEECTTCCCHHHH---HHHHHHHHTTSCCCEEECTTSCC-CEECTT--TTGGGGGSCCCEEECTTSC-CCE
T ss_pred --HHHHHHHHHHCCCCCCCHHH---HHHHHHHHHHCCCCEEECCCCCC-CCCCHH--HHHCCCCCCCCEEECCCCC-CCC
T ss_conf --32234455430566468056---77787775315100887457743-646866--7514676778887787887-675
Q ss_pred CCCHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 36436872168741999810532366750289887788766532235444675477777221123657777789998887
Q 000704 826 IFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLPQLTSFYAQLKSSDELDTPKPLF 905 (1342)
Q Consensus 826 l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~~~~~~~ 905 (1342)
+++ ..+..+++|+.|+++++.-. .+... .+..
T Consensus 263 ~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~-----------~~~~----------------------------------- 294 (680)
T 1ziw_A 263 VGN-DSFAWLPQLEYFFLEYNNIQ-HLFSH-----------SLHG----------------------------------- 294 (680)
T ss_dssp ECT-TTTTTCTTCCEEECCSCCBS-EECTT-----------TTTT-----------------------------------
T ss_pred CCC-CCCCCCCCCCEEECCCCCCC-CCCHH-----------HHCC-----------------------------------
T ss_conf 680-21167410568557788567-65865-----------6267-----------------------------------
Q ss_pred CCCCCCCCCCEEECCCCCCC------CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCC-
Q ss_conf 64323465441202332333------23568998888777777599881465633236613784013575799921333-
Q 000704 906 NERVVFPNLETLELYAINTE------RIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVRNFVQLQHLEICHCTV- 978 (1342)
Q Consensus 906 ~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~- 978 (1342)
+++|+.|.+.++... .++... ......+++|++|++++| .+..+ +...+..+++|++|++++|..
T Consensus 295 -----l~~L~~L~L~~~~~~~~~~~~~lp~i~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 295 -----LFNVRYLNLKRSFTKQSISLASLPKID-DFSFQWLKCLEHLNMEDN-DIPGI-KSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp -----CTTCCEEECTTCBCCC------CCEEC-TTTTTTCTTCCEEECCSC-CBCCC-CTTTTTTCTTCCEEECTTCBSC
T ss_pred -----CCCCCEEECCCHHHHCCCCCCCCCCCC-HHHCCCCCCCCEEECCCC-CCCCC-CHHHHCCCCCCCEEECCCCCHH
T ss_conf -----888557736331321333335545438-656246777888879898-26878-8557406568728988798014
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCHHCCCCC
Q ss_conf 32001233454554300157645001146865441024522224776525675068721121234456887400001466
Q 000704 979 LEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSEFLSFPKNSEEIQRNI 1058 (1342)
Q Consensus 979 L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~~~~~~~~~~~~~~ 1058 (1342)
+..+... .......++|+.|++++|.- ..+.+.... .+++|+.|++.++.-...++..
T Consensus 367 ~~~l~~~-----~f~~~~~~~L~~L~L~~n~l-~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~--------------- 424 (680)
T 1ziw_A 367 LRTLTNE-----TFVSLAHSPLHILNLTKNKI-SKIESDAFS-WLGHLEVLDLGLNEIGQELTGQ--------------- 424 (680)
T ss_dssp CCEECTT-----TTGGGTTSCCCEEECTTSCC-CEECTTTTT-TCTTCCEEECCSSCCEEECCSG---------------
T ss_pred HHHCCHH-----HHCCCCCCCCCEEECCCCCC-CEECHHHHH-CCCCCCEEECCCCCCCCCCCCC---------------
T ss_conf 4323532-----20245568676688999977-767754420-7788888867787575435755---------------
Q ss_pred CCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCCCEEEEECCCCC--CCCHHHHHHCCCCCEEEEEEECEEE
Q ss_conf 53320255566235511354146564200247787433455408998318999--8737788432886379999100035
Q 000704 1059 PTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSD--NFPICFLQYFKNLEKLELRWSSYKQ 1136 (1342)
Q Consensus 1059 ~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~--~~~~~~l~~l~~L~~L~i~~~~l~~ 1136 (1342)
....+++|+.|++++|.+..+....+. .+++|+.|++++|.+. ...+..+..+++|+.|+++.+.+..
T Consensus 425 --------~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 494 (680)
T 1ziw_A 425 --------EWRGLENIFEIYLSYNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN 494 (680)
T ss_dssp --------GGTTCTTCCEEECCSCSEEECCTTTTT--TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred --------CCCCCCCCCEEECCCCCCCEECHHHHH--CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf --------325754612784489975422764550--0754310110146442256677645557878999899998776
Q ss_pred ECCCHHHHHHHCCCCCCCEEEECCCCCCCHHHCCC-----CCCCHHHCCCCEEEEECCCCCCCCCC-CCCCCCCCCEEEE
Q ss_conf 20241355620344463455607788864111259-----76502110122145631567554578-9854476348998
Q 000704 1137 IFSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQG-----FKLDSVVENLEMLEVWWCDNLVNLVP-SSPSFRNLITLEV 1210 (1342)
Q Consensus 1137 l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-----~~~~~~l~sL~~L~l~~c~~l~~lp~-~~~~l~sL~~L~i 1210 (1342)
+++. .+..+++|+.|+++++. +..++... ...+..+++|+.|+++++. +..+|. .+..+++|+.|++
T Consensus 495 i~~~-----~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 567 (680)
T 1ziw_A 495 INDD-----MLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDL 567 (680)
T ss_dssp CCTT-----TTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCHH-----HHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCCEEEC
T ss_conf 7944-----63455346888588997-30000000467741423379988888899997-88779777346667522389
Q ss_pred ECCCCCCCCCCHHHHHCCCCCCEEEECCCCCCHHHHCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 45789854445465620245558977155321022037776554421-02321222211133
Q 000704 1211 WYCKGLKNLVTSSTAKSLVQLMQLRIDGCKMITEIISNEGDVAEDEI-VFSKLKWLSLENLE 1271 (1342)
Q Consensus 1211 ~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~c~ 1271 (1342)
++ ++++.++ ......+++|+.|++++|. ++.++.. .+. .+++|+.|++.++|
T Consensus 568 s~-N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~------~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 568 GL-NNLNTLP-ASVFNNQVSLKSLNLQKNL-ITSVEKK------VFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp CS-SCCCCCC-TTTTTTCTTCCEEECTTSC-CCBCCHH------HHHHHHTTCSEEECTTCC
T ss_pred CC-CCCCCCC-HHHHCCCCCCCEEECCCCC-CCCCCHH------HHCCCCCCCCEEECCCCC
T ss_conf 99-9777679-7683789888889899996-8705966------830114665779831897
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=306.00 Aligned_cols=178 Identities=19% Similarity=0.233 Sum_probs=129.6
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 1199802468899898678997318980389999888803445999953999548878767-823799999999974698
Q 000704 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1342)
Q Consensus 490 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1342)
-+.+..++..+..+|..+. +++++|++++|.. ..++...|.++++|++|++++|.+..+ |..|..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCEECCCCCCCCCCCCCC-CCCCEEECCCCCC-CEECHHHCCCCCCCCEEECCCCCCCCCCHHHHHCHHHCCEEECCCC
T ss_conf 9705746888451898888-8767887888975-7737545557766748868877366439777306010688678798
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCEEECCCCCCCC--CCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 88897--45468988998985699883057-122897744699255888898--53901027999988998459966432
Q 000704 569 ILGDI--AIIGNLKNLEILSLCCSDIEQLP-REIGELTQLKLLDLSNCSKLK--VIPPNVISSLSQLEELYLGNTSVEWE 643 (1342)
Q Consensus 569 ~i~~l--~~i~~L~~L~~L~L~~~~i~~Lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~ 643 (1342)
.+..+ ..|+++.+|++|++++|.+..+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred CCCCCCHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCEECHHH-HHHCCCCCEEECCCCCCEEC
T ss_conf 5630485220786537888703775554451134898877989687885-232530686-73267777887668853105
Q ss_pred CCCCCCCCCCCCHHHHCCCCC-CCEEEEECCCCCCCC
Q ss_conf 233443357779252039999-889993236897899
Q 000704 644 FEGLNLERNNASLQELSILSH-LTTLEIHIRDAVILP 679 (1342)
Q Consensus 644 ~~~~~~~~~~~~~~~l~~L~~-L~~L~i~~~~~~~~~ 679 (1342)
. ...+..+..++. +..|+++.+....++
T Consensus 169 ~--------~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 169 T--------VNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp C--------TTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred C--------HHHHHHHHCCCCCCCEEECCCCCCCEEC
T ss_conf 7--------3341212034200243004689753257
No 9
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=302.67 Aligned_cols=307 Identities=22% Similarity=0.281 Sum_probs=228.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHC-CCCC-CEEEEEEECCCCCHHHHHHH
Q ss_conf 7885433216999999999973--999599999939998088999999999840-7984-32999992579698999999
Q 000704 135 NEGHEFIESRESILNDILDALR--GPYVYMIGVYGMAGIGKTTLVKEVARLAKE-GRIF-DEVVFAEVSQTPDLKRIRRE 210 (1342)
Q Consensus 135 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vi~I~G~gG~GKTtLa~~~~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~ 210 (1342)
|.....|+||+.++++|.+++. .++.++|+|+||||+||||||++++++.+. ..+| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC-CHHHHHHH
T ss_conf 99987140529999999999860368884699976998988999999983556888528996599977877-66889999
Q ss_pred H---HHHHCCC-----CCCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHH
Q ss_conf 9---9983898-----7888929999999999862-78199999188882110000787788999918999816234554
Q 000704 211 I---ADQLGLN-----FCEESDSERIMMLCNRLKR-EKKILVILDDIWTSLDLERTGIPFGDVHRGCKILVTSRRRDVLV 281 (1342)
Q Consensus 211 i---~~~l~~~-----~~~~~~~~~~~~~~~~l~~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~iiiTtR~~~~~~ 281 (1342)
+ +..++.. ............+...+.. .+++|||+||+|+...++.+ .+|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCCHHHH
T ss_conf 99999985035565567998899999999999706799869998589987999876-------37986999898817777
Q ss_pred HHCCCCCCEEE---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 21375740992---179978899999988289999960899999999994899189999999963999268999999986
Q 000704 282 SEMHCQNNYCV---SVLNKEEAWSLFSKVVGNCVEDPDLQTVAIQVANECGGLPIAILTVARTLRNKPLFVWKKALQELR 358 (1342)
Q Consensus 282 ~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~~~~l~~~~~~~w~~~l~~l~ 358 (1342)
. .. ...+.+ ++|+.++++++|...++.. .....+.+.+|+++|+|+|+|+..+|+.++.+. ..|+.+++.+.
T Consensus 272 ~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 S-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQ 346 (591)
T ss_dssp T-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred H-CC-CCCEEEECCCCCCHHHHHHHHHHHHCCC--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 3-48-9826861588999899999999871898--310459999999995898379999999984484-35999999998
Q ss_pred HCCCC------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 20168------730578887589998505585413788876113888899319999997620454334000999999999
Q 000704 359 FSARN------FTGLEALLGSTIELIYNYLEGEELKLTFLLCSLMKHPCDAPIMDLLKYGTGLGLFEDIYTMQERRDRVY 432 (1342)
Q Consensus 359 ~~~~~------~~~~~~~~~~~l~~sy~~L~~~~lk~~fl~~s~fp~~~~~~i~~li~~w~~~g~~~~~~~~~~~~~~~~ 432 (1342)
..... ......+. .++..||+.|+++ .|.||++||+||+++.+....+...|.+.+ +++ .
T Consensus 347 ~~~~~~~~~~~~~~~~~l~-~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~~----~ 412 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALD-EAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EEV----E 412 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHH-HHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HHH----H
T ss_pred HHHHHHHHHCCCCCHHHHH-HHHHHHHHHCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHCCCH--------HHH----H
T ss_conf 8689876511465437899-9999999868999-999999745567998508999999966588--------999----9
Q ss_pred HHHHHHHHCCCCCCCC--CCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999673024324699--63424353578999998620
Q 000704 433 ALVRGLKDTCLLHDDD--TADWFSMLGFVRNVAISIAS 468 (1342)
Q Consensus 433 ~~l~~L~~~~l~~~~~--~~~~~~mH~li~~~~~~~~~ 468 (1342)
.++++|++++|++... ...+|+||+++|+|++....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999985958688548985679976899999986535
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=300.13 Aligned_cols=539 Identities=16% Similarity=0.149 Sum_probs=304.0
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC-CCCCCCCCCCCEEECCCC
Q ss_conf 1199802468899898678997318980389999888803445999953999548878767-823799999999974698
Q 000704 490 CIAIFLHDINTGELPEGLEYPHLTSLCMNPKDPFLHIPDNFFAGMPKLRVLVLTRMKLLTL-PSSFCHLPNLESLCLDQC 568 (1342)
Q Consensus 490 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~ip~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~Lr~L~L~~~ 568 (1342)
.+.+...+..+..+|..+ ...+++|++++|... .++...|.++++|++|++++|.+..+ |..|..+.+|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCC-CCCCCEEECCCCCCC-CCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 723777779806286778-986758981587347-179667256766528978898355248511368433676448898
Q ss_pred CCCCC--CCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 88897--4546898899898569988305-71228977446992558888985390102799998899845996643223
Q 000704 569 ILGDI--AIIGNLKNLEILSLCCSDIEQL-PREIGELTQLKLLDLSNCSKLKVIPPNVISSLSQLEELYLGNTSVEWEFE 645 (1342)
Q Consensus 569 ~i~~l--~~i~~L~~L~~L~L~~~~i~~L-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 645 (1342)
.+..+ ..++++.+|++|++++|.+..+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred CCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCC-CCCCCCCCCCCCCCCCEEECCCCCCC----
T ss_conf 5654586552344215376521267665781012237822389887983-41147654568765687776568445----
Q ss_pred CCCCCCCCCCHHHHCCCCCCC--EEEEECCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCHHHH
Q ss_conf 344335777925203999988--999323689789904441034525899823128999988863132159975446899
Q 000704 646 GLNLERNNASLQELSILSHLT--TLEIHIRDAVILPKGLFSQKLARYKILVGDVWDWPGKSENRRTLKLKLPTNIYLDEI 723 (1342)
Q Consensus 646 ~~~~~~~~~~~~~l~~L~~L~--~L~i~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 723 (1342)
......++.+++|+ .|++..+.....+...+
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~---------------------------------------- 199 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF---------------------------------------- 199 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEECTTTT----------------------------------------
T ss_pred -------CCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHH----------------------------------------
T ss_conf -------549656332215640389667981475486673----------------------------------------
Q ss_pred HHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCHHCCC
Q ss_conf 95612001501367788211001126798642350103336763782268663235645443556323433310031465
Q 000704 724 IMNLKEIEELYLDEVPGIENVLYELDRKGLPALKHLRAQNNPFILCIVDSMAQVRCNAFPVLESMFLHNLIHLEKICDGL 803 (1342)
Q Consensus 724 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~~~~i~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~ 803 (1342)
....++.|++.++......+..+. -..+..+.+..+ ..+....+.. ..
T Consensus 200 --~~~~L~~L~l~~~~~~~~~~~~l~---~~~l~~l~~~~~------------------~~~~~~~i~~---------~~ 247 (606)
T 3t6q_A 200 --DSAVFQSLNFGGTQNLLVIFKGLK---NSTIQSLWLGTF------------------EDMDDEDISP---------AV 247 (606)
T ss_dssp --TTCEEEEEECTTCSCHHHHHHHTT---TCEEEEEECCCC------------------TTSCCCCCCG---------GG
T ss_pred --HHCCCCCCCCCCCHHHHHHHHHCC---CCCHHHEECHHH------------------CCCCCCCCCH---------HH
T ss_conf --001001355677266777765133---564422002011------------------0264122686---------67
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 64001244119999508984333643687216874199981053236675028988778876653223544467547777
Q 000704 804 LTAEFFSKLRIIKVRNCDKLKNIFSFSIVRGLPQLQILKVIKCNNMEEIFSFGGEDDVGYNEVDKIEFGQLRSLILKFLP 883 (1342)
Q Consensus 804 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 883 (1342)
+..-.-.+|+.|.+.++ .+..+++ ..+..+++|+.|++++|. +..++.
T Consensus 248 ~~~l~~~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~lp~----------------------------- 295 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKH-YFFNISS-NTFHCFSGLQELDLTATH-LSELPS----------------------------- 295 (606)
T ss_dssp GGGGGGSEEEEEECTTC-CCSSCCT-TTTTTCTTCSEEECTTSC-CSCCCS-----------------------------
T ss_pred HCHHHCCCEEEEEEECC-CCCCCCH-HHHCCCCCCCEEECCCCC-CCCCCH-----------------------------
T ss_conf 43032075059994457-6585577-774456678889562882-677782-----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHH
Q ss_conf 72211236577777899988876432346544120233233323568998888777777599881465633236613784
Q 000704 884 QLTSFYAQLKSSDELDTPKPLFNERVVFPNLETLELYAINTERIWHNQPVAVSPGIQNLTRLIVHGSEKIKYLFPSSIVR 963 (1342)
Q Consensus 884 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~ 963 (1342)
....+++|+.|.+.++.+..+..... ..+++|+.|.+.+|.....+ +...+.
T Consensus 296 -----------------------~l~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~~~~~~-~~~~~~ 347 (606)
T 3t6q_A 296 -----------------------GLVGLSTLKKLVLSANKFENLCQISA----SNFPSLTHLSIKGNTKRLEL-GTGCLE 347 (606)
T ss_dssp -----------------------SCCSCTTCCEEECTTCCCSBGGGGCG----GGCTTCSEEECCSCSSCCBC-CSSTTT
T ss_pred -----------------------HHCCCCCCCEEECCCCCCCCCCHHHH----HCCCCCCEEECCCCCCCCCC-CHHHHH
T ss_conf -----------------------14165468889771687686760233----01576898889899744434-624550
Q ss_pred HCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCC
Q ss_conf 01357579992133332001233454554300157645001146865441024522224776525675068721121234
Q 000704 964 NFVQLQHLEICHCTVLEEIVSKERGEEATATFVFPKVTYLKLCNLSELITFYPGIHTLEWPLLKRLEVYGCNKVKIFTSE 1043 (1342)
Q Consensus 964 ~l~~L~~L~i~~c~~L~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~L~~L~i~~C~~L~~l~~~ 1043 (1342)
.+++|++|++++|. +... .........+++|+.|++.+|.-....+.
T Consensus 348 ~l~~L~~L~l~~n~-l~~~-------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~- 394 (606)
T 3t6q_A 348 NLENLRELDLSHDD-IETS-------------------------------DCCNLQLRNLSHLQSLNLSYNEPLSLKTE- 394 (606)
T ss_dssp TCTTCCEEECCSSC-CCEE-------------------------------EESTTTTTTCTTCCEEECCSCSCEEECTT-
T ss_pred CCCCCCEEECCCCC-CCCC-------------------------------CCCCHHCCCCCCCCEEECCCCCCCCCCHH-
T ss_conf 66758988788996-6645-------------------------------67522105678889898989967757888-
Q ss_pred CCCCCCCCHHCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCC
Q ss_conf 45688740000146653320255566235511354146564200247787433455408998318999873778843288
Q 000704 1044 FLSFPKNSEEIQRNIPTQQALFLVEKVGSHLEELKLSGKDITMIREGRLPTYLFQNLKILEVVNDKSDNFPICFLQYFKN 1123 (1342)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~l~~l~~ 1123 (1342)
....+++|+.|++++|.+....... ....+++|+.|++++|.+...+...+..+++
T Consensus 395 -----------------------~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 450 (606)
T 3t6q_A 395 -----------------------AFKECPQLELLDLAFTRLKVKDAQS-PFQNLHLLKVLNLSHSLLDISSEQLFDGLPA 450 (606)
T ss_dssp -----------------------TTTTCTTCSEEECTTCCEECCTTCC-TTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred -----------------------HHCCCCCCCEEECCCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCHHHHHCCCC
T ss_conf -----------------------7347745776878888677756521-2417655888989898557768778737887
Q ss_pred CCEEEEEEECEEEE-CCCHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 63799991000352-02413556203444634556077888641112597650211012214563156755457898544
Q 000704 1124 LEKLELRWSSYKQI-FSYKEAEKHAGKLTHIKSLKLWELSDLMYLWNQGFKLDSVVENLEMLEVWWCDNLVNLVPSSPSF 1202 (1342)
Q Consensus 1124 L~~L~i~~~~l~~l-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~l~sL~~L~l~~c~~l~~lp~~~~~l 1202 (1342)
|+.|+++.+.+... ++ ....+..+++|+.|++++|. +..+. +..+..+++|++|++++|......|..+..+
T Consensus 451 L~~L~L~~n~l~~~~~~---~~~~~~~l~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQ---KTNSLQTLGRLEILVLSFCD-LSSID---QHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp CCEEECTTCBCGGGEEC---SSCGGGGCTTCCEEECTTSC-CCEEC---TTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred CCEEECCCCCCCCCCCC---CCHHHCCCCCCCEEECCCCC-CCCCC---HHHHCCCCCCCEEECCCCCCCCCCHHHHCCC
T ss_conf 88898989988854345---43124048876688799996-67068---6463265678889898980686896684756
Q ss_pred CCCCEEEEECCCCCCCCCCHHHHHCCCCCCEEEECCCCC
Q ss_conf 763489984578985444546562024555897715532
Q 000704 1203 RNLITLEVWYCKGLKNLVTSSTAKSLVQLMQLRIDGCKM 1241 (1342)
Q Consensus 1203 ~sL~~L~i~~C~~l~~l~~~~~~~~l~sL~~L~i~~c~~ 1241 (1342)
++| .|++++ ++++.+++ .....+++|+.|++++|+.
T Consensus 524 ~~L-~L~L~~-N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 524 KGI-YLNLAS-NHISIILP-SLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CSC-EEECCS-SCCCCCCG-GGHHHHHTSSEEECTTCCE
T ss_pred CCC-EEECCC-CCCCCCCH-HHCCCCCCCCEEECCCCCC
T ss_conf 651-898768-94142687-6625677878896779986
Done!