Query 000705
Match_columns 1342
No_of_seqs 220 out of 322
Neff 5.9
Searched_HMMs 46136
Date Mon Apr 1 22:13:20 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0414 Chromosome condensatio 100.0 4E-235 9E-240 2118.2 96.8 1187 1-1244 1-1208(1251)
2 COG5098 Chromosome condensatio 100.0 8E-186 2E-190 1596.8 68.2 1066 41-1165 29-1123(1128)
3 PF12717 Cnd1: non-SMC mitotic 100.0 3.7E-42 8.1E-47 366.5 15.7 165 989-1153 1-177 (178)
4 KOG0413 Uncharacterized conser 100.0 1.3E-31 2.8E-36 320.8 36.3 653 374-1163 470-1172(1529)
5 PF12922 Cnd1_N: non-SMC mitot 100.0 2.1E-33 4.5E-38 297.7 16.2 162 81-249 1-171 (171)
6 KOG0414 Chromosome condensatio 99.5 2.4E-09 5.2E-14 135.5 54.1 245 908-1154 920-1220(1251)
7 KOG1020 Sister chromatid cohes 99.0 8.6E-06 1.9E-10 106.0 44.0 588 374-1155 814-1499(1692)
8 PF01602 Adaptin_N: Adaptin N 98.8 6.5E-06 1.4E-10 101.8 33.5 153 264-443 25-179 (526)
9 PTZ00429 beta-adaptin; Provisi 98.6 0.00074 1.6E-08 87.0 45.6 152 271-448 58-211 (746)
10 PF12719 Cnd3: Nuclear condens 98.5 6.6E-06 1.4E-10 95.4 20.7 219 932-1156 26-286 (298)
11 PTZ00429 beta-adaptin; Provisi 98.2 0.0002 4.3E-09 92.1 24.8 215 908-1137 49-268 (746)
12 PF01602 Adaptin_N: Adaptin N 98.1 0.00042 9.1E-09 85.9 23.6 248 909-1175 24-277 (526)
13 PRK09687 putative lyase; Provi 97.9 0.00095 2.1E-08 77.1 21.8 149 935-1099 56-204 (280)
14 PLN03200 cellulose synthase-in 97.8 0.53 1.2E-05 66.6 47.2 411 560-1082 315-767 (2102)
15 PF12717 Cnd1: non-SMC mitotic 97.7 0.0006 1.3E-08 73.4 14.3 92 951-1043 1-93 (178)
16 KOG1060 Vesicle coat complex A 97.6 0.043 9.3E-07 69.1 29.4 428 251-808 39-513 (968)
17 PF12830 Nipped-B_C: Sister ch 97.5 0.00077 1.7E-08 73.3 12.6 147 1009-1155 4-170 (187)
18 KOG1293 Proteins containing ar 96.9 0.54 1.2E-05 58.9 28.8 133 941-1077 383-531 (678)
19 PF10508 Proteasom_PSMB: Prote 96.9 1.1 2.5E-05 56.1 32.0 351 647-1081 16-391 (503)
20 KOG1824 TATA-binding protein-i 96.8 3 6.5E-05 54.4 56.0 614 304-1054 352-1048(1233)
21 PF12348 CLASP_N: CLASP N term 96.8 0.012 2.6E-07 65.3 12.3 127 951-1079 66-206 (228)
22 KOG2171 Karyopherin (importin) 96.7 4.3 9.2E-05 54.2 58.8 410 223-717 49-477 (1075)
23 KOG1061 Vesicle coat complex A 96.6 0.012 2.6E-07 74.1 12.1 188 951-1141 62-255 (734)
24 PRK09687 putative lyase; Provi 96.4 0.076 1.6E-06 61.6 16.0 133 950-1099 103-235 (280)
25 COG5096 Vesicle coat complex, 96.3 0.19 4.1E-06 64.7 20.2 176 908-1097 36-213 (757)
26 KOG2023 Nuclear transport rece 96.2 1.5 3.2E-05 55.2 25.8 409 670-1190 175-615 (885)
27 cd00020 ARM Armadillo/beta-cat 96.2 0.018 4E-07 56.1 8.0 101 977-1078 9-119 (120)
28 cd00020 ARM Armadillo/beta-cat 96.0 0.047 1E-06 53.1 10.2 101 935-1041 9-119 (120)
29 PF04826 Arm_2: Armadillo-like 95.9 0.13 2.8E-06 58.9 14.2 128 950-1081 25-165 (254)
30 PF13646 HEAT_2: HEAT repeats; 95.7 0.031 6.7E-07 52.3 6.9 82 977-1070 1-83 (88)
31 PF12348 CLASP_N: CLASP N term 95.5 0.27 5.8E-06 54.6 14.9 134 301-448 66-209 (228)
32 PF10508 Proteasom_PSMB: Prote 95.5 2 4.3E-05 54.0 24.2 228 928-1163 72-327 (503)
33 COG5096 Vesicle coat complex, 95.3 0.24 5.1E-06 63.9 15.1 167 268-460 42-219 (757)
34 PRK13800 putative oxidoreducta 95.2 0.1 2.3E-06 69.6 12.2 115 935-1072 777-892 (897)
35 KOG1248 Uncharacterized conser 94.8 21 0.00045 48.2 30.1 247 183-445 490-767 (1176)
36 PF13646 HEAT_2: HEAT repeats; 94.4 0.24 5.2E-06 46.2 8.9 86 327-441 1-88 (88)
37 KOG1059 Vesicle coat complex A 94.3 2.1 4.5E-05 54.4 18.7 104 1054-1158 303-429 (877)
38 PF13513 HEAT_EZ: HEAT-like re 94.2 0.039 8.4E-07 47.7 3.0 51 990-1040 1-55 (55)
39 KOG1062 Vesicle coat complex A 94.2 0.75 1.6E-05 58.8 15.0 86 933-1024 142-230 (866)
40 KOG2023 Nuclear transport rece 94.2 0.4 8.8E-06 59.9 12.3 143 953-1096 143-304 (885)
41 COG5218 YCG1 Chromosome conden 94.1 1.5 3.2E-05 54.4 16.5 116 322-451 88-203 (885)
42 KOG1020 Sister chromatid cohes 94.0 0.36 7.8E-06 65.0 12.2 154 928-1083 808-965 (1692)
43 KOG1525 Sister chromatid cohes 93.5 4.3 9.3E-05 55.7 21.2 156 281-446 203-406 (1266)
44 PLN03200 cellulose synthase-in 93.4 58 0.0013 47.4 48.2 246 935-1192 448-723 (2102)
45 PRK13800 putative oxidoreducta 93.3 0.53 1.2E-05 63.1 12.6 102 950-1070 633-734 (897)
46 KOG1059 Vesicle coat complex A 91.8 0.68 1.5E-05 58.5 9.6 72 968-1040 137-208 (877)
47 PF05918 API5: Apoptosis inhib 91.1 8 0.00017 49.0 18.0 102 971-1076 55-159 (556)
48 KOG2025 Chromosome condensatio 91.0 4.3 9.3E-05 51.7 15.3 109 322-442 82-190 (892)
49 KOG0213 Splicing factor 3b, su 91.0 22 0.00048 45.7 21.1 169 264-443 632-826 (1172)
50 PF10363 DUF2435: Protein of u 90.9 1.3 2.8E-05 43.1 8.8 72 377-448 4-75 (92)
51 KOG2259 Uncharacterized conser 90.6 1.1 2.4E-05 56.3 9.6 83 953-1075 388-471 (823)
52 KOG2011 Sister chromatid cohes 90.3 4.2 9.1E-05 54.3 15.2 125 988-1117 299-434 (1048)
53 KOG2025 Chromosome condensatio 90.3 1.3 2.8E-05 56.1 10.0 70 374-443 83-153 (892)
54 PF08506 Cse1: Cse1; InterPro 90.2 21 0.00046 43.3 20.1 207 225-438 110-368 (370)
55 PF12765 Cohesin_HEAT: HEAT re 89.8 0.3 6.5E-06 40.6 2.9 26 415-440 17-42 (42)
56 KOG1078 Vesicle coat complex C 89.6 81 0.0017 41.4 32.7 77 1012-1089 465-541 (865)
57 PF03224 V-ATPase_H_N: V-ATPas 89.4 4 8.8E-05 48.0 13.1 73 977-1050 57-142 (312)
58 COG5240 SEC21 Vesicle coat com 89.3 3.4 7.4E-05 51.3 12.2 128 953-1081 428-557 (898)
59 KOG1824 TATA-binding protein-i 89.3 93 0.002 41.6 48.0 231 200-449 41-290 (1233)
60 cd03572 ENTH_epsin_related ENT 89.2 1.3 2.9E-05 45.2 7.6 35 374-408 36-70 (122)
61 KOG1248 Uncharacterized conser 89.1 35 0.00076 46.3 21.8 228 190-447 651-900 (1176)
62 KOG1062 Vesicle coat complex A 88.4 12 0.00026 48.6 16.5 91 950-1043 119-209 (866)
63 KOG1058 Vesicle coat complex C 88.2 5.8 0.00013 50.8 13.5 252 930-1191 131-428 (948)
64 PF10363 DUF2435: Protein of u 87.3 2.3 5E-05 41.4 7.6 78 1016-1093 6-86 (92)
65 cd00256 VATPase_H VATPase_H, r 87.0 29 0.00063 42.9 18.5 76 974-1050 52-138 (429)
66 PF04826 Arm_2: Armadillo-like 87.0 6.1 0.00013 45.4 12.1 124 974-1098 11-145 (254)
67 PF13513 HEAT_EZ: HEAT-like re 86.7 1.9 4.1E-05 37.1 6.0 51 952-1003 1-55 (55)
68 COG5098 Chromosome condensatio 86.3 5.1 0.00011 50.8 11.4 125 957-1082 281-418 (1128)
69 KOG1991 Nuclear transport rece 86.2 1.4E+02 0.003 40.2 39.0 140 301-451 384-538 (1010)
70 KOG2259 Uncharacterized conser 86.1 1.7 3.7E-05 54.6 7.3 29 1010-1038 443-471 (823)
71 PF12460 MMS19_C: RNAPII trans 85.0 94 0.002 38.2 21.8 76 371-448 314-397 (415)
72 KOG2171 Karyopherin (importin) 84.4 1.8E+02 0.0038 39.9 62.3 236 176-449 223-465 (1075)
73 PF05918 API5: Apoptosis inhib 83.6 56 0.0012 41.7 19.0 85 950-1041 71-162 (556)
74 KOG1061 Vesicle coat complex A 83.3 1.6E+02 0.0035 38.6 24.2 160 277-463 45-209 (734)
75 COG5181 HSH155 U2 snRNP splice 82.3 8.5 0.00018 48.3 10.9 118 977-1097 802-931 (975)
76 PF12755 Vac14_Fab1_bd: Vacuol 81.3 12 0.00025 36.9 9.6 92 341-444 2-95 (97)
77 COG5218 YCG1 Chromosome conden 80.1 13 0.00028 46.6 11.3 70 374-443 89-159 (885)
78 PF02985 HEAT: HEAT repeat; I 79.9 2.4 5.2E-05 32.6 3.5 26 1016-1041 3-28 (31)
79 cd00197 VHS_ENTH_ANTH VHS, ENT 79.7 6.4 0.00014 39.3 7.5 84 995-1078 19-114 (115)
80 KOG0211 Protein phosphatase 2A 79.3 27 0.00058 46.1 14.6 167 268-450 501-669 (759)
81 KOG1060 Vesicle coat complex A 79.1 2.3E+02 0.0049 37.6 39.7 132 959-1097 372-510 (968)
82 PF12755 Vac14_Fab1_bd: Vacuol 79.0 15 0.00033 36.1 9.6 87 307-404 9-95 (97)
83 KOG1241 Karyopherin (importin) 79.0 35 0.00076 44.3 14.9 139 281-428 319-461 (859)
84 KOG0213 Splicing factor 3b, su 78.3 81 0.0018 41.0 17.4 227 935-1184 715-966 (1172)
85 KOG0166 Karyopherin (importin) 78.2 20 0.00042 45.1 12.3 137 950-1088 122-274 (514)
86 KOG0413 Uncharacterized conser 78.1 3.3 7.2E-05 53.9 5.8 145 990-1138 945-1101(1529)
87 PF11698 V-ATPase_H_C: V-ATPas 77.4 3.6 7.7E-05 42.0 4.8 65 977-1044 45-117 (119)
88 COG1413 FOG: HEAT repeat [Ener 76.9 1.3E+02 0.0028 35.4 18.6 93 975-1080 43-136 (335)
89 KOG2274 Predicted importin 9 [ 76.8 1.2E+02 0.0026 40.4 18.8 228 928-1157 521-782 (1005)
90 PF12765 Cohesin_HEAT: HEAT re 76.2 2.4 5.3E-05 35.2 2.7 38 1000-1037 3-42 (42)
91 PF12830 Nipped-B_C: Sister ch 75.6 9.4 0.0002 41.8 7.9 72 374-448 6-77 (187)
92 COG1413 FOG: HEAT repeat [Ener 74.1 96 0.0021 36.5 16.5 78 339-443 163-240 (335)
93 KOG1525 Sister chromatid cohes 74.0 57 0.0012 45.4 15.9 107 933-1043 297-406 (1266)
94 TIGR02270 conserved hypothetic 73.8 13 0.00029 45.6 9.4 108 950-1077 98-205 (410)
95 PF02985 HEAT: HEAT repeat; I 73.3 5.6 0.00012 30.5 3.9 28 418-445 2-29 (31)
96 PF12719 Cnd3: Nuclear condens 73.3 71 0.0015 37.4 14.9 86 985-1070 36-134 (298)
97 KOG2160 Armadillo/beta-catenin 72.9 22 0.00048 42.5 10.4 108 933-1047 125-245 (342)
98 KOG4653 Uncharacterized conser 72.2 56 0.0012 43.1 14.3 132 301-445 781-918 (982)
99 PF14500 MMS19_N: Dos2-interac 71.5 23 0.0005 41.0 10.1 110 329-448 3-114 (262)
100 KOG1967 DNA repair/transcripti 71.3 1.2E+02 0.0025 40.6 16.8 224 201-449 764-1023(1030)
101 TIGR02270 conserved hypothetic 70.8 13 0.00027 45.8 8.2 85 328-442 120-204 (410)
102 PF13001 Ecm29: Proteasome sta 70.3 94 0.002 39.3 16.0 101 309-416 395-498 (501)
103 PF14228 MOR2-PAG1_mid: Cell m 70.2 51 0.0011 45.4 14.2 247 956-1213 483-759 (1120)
104 KOG1240 Protein kinase contain 69.6 86 0.0019 42.9 15.4 118 977-1095 619-742 (1431)
105 PF08713 DNA_alkylation: DNA a 69.4 13 0.00029 40.7 7.4 130 952-1091 65-196 (213)
106 COG5215 KAP95 Karyopherin (imp 68.8 39 0.00085 42.6 11.4 106 975-1098 597-708 (858)
107 KOG2062 26S proteasome regulat 67.7 18 0.00039 46.6 8.6 85 950-1040 567-651 (929)
108 KOG0915 Uncharacterized conser 66.7 4.9E+02 0.011 37.2 21.5 252 948-1206 1008-1321(1702)
109 PF08569 Mo25: Mo25-like; Int 64.0 3.3E+02 0.0071 32.9 18.8 208 225-472 90-305 (335)
110 KOG1241 Karyopherin (importin) 63.6 4.8E+02 0.01 34.7 22.3 180 950-1132 229-456 (859)
111 PF12726 SEN1_N: SEN1 N termin 60.6 1.2E+02 0.0027 40.0 15.0 151 970-1120 33-201 (727)
112 KOG2149 Uncharacterized conser 59.6 17 0.00037 44.0 6.2 73 374-446 56-129 (393)
113 KOG1242 Protein containing ada 58.9 5.1E+02 0.011 33.5 28.4 133 306-452 118-253 (569)
114 KOG1240 Protein kinase contain 57.8 5.1E+02 0.011 36.2 19.1 239 193-445 448-725 (1431)
115 COG5116 RPN2 26S proteasome re 57.5 31 0.00068 43.3 7.9 111 950-1080 564-674 (926)
116 cd00197 VHS_ENTH_ANTH VHS, ENT 57.4 38 0.00082 33.8 7.4 69 375-443 36-113 (115)
117 cd03572 ENTH_epsin_related ENT 55.3 7.8 0.00017 39.8 2.1 46 999-1044 24-69 (122)
118 PF14228 MOR2-PAG1_mid: Cell m 54.9 7.4E+02 0.016 34.8 20.7 260 175-443 258-570 (1120)
119 PF14500 MMS19_N: Dos2-interac 54.0 1.3E+02 0.0028 34.9 12.0 149 986-1155 9-176 (262)
120 cd07064 AlkD_like_1 A new stru 53.6 1.6E+02 0.0036 32.8 12.4 145 953-1112 61-207 (208)
121 cd06561 AlkD_like A new struct 52.9 1.2E+02 0.0026 32.7 11.0 129 954-1091 52-182 (197)
122 smart00638 LPD_N Lipoprotein N 52.7 76 0.0016 40.6 10.9 131 937-1072 397-538 (574)
123 smart00544 MA3 Domain in DAP-5 51.8 94 0.002 30.7 9.2 73 374-446 34-109 (113)
124 PF08767 CRM1_C: CRM1 C termin 50.1 1.9E+02 0.0042 34.4 13.0 105 932-1041 117-243 (319)
125 PF03378 CAS_CSE1: CAS/CSE pro 48.2 1.1E+02 0.0024 38.1 10.9 241 928-1209 66-323 (435)
126 KOG2038 CAATT-binding transcri 47.4 48 0.001 43.1 7.5 74 374-450 302-375 (988)
127 cd03561 VHS VHS domain family; 47.4 93 0.002 32.1 8.6 87 995-1081 19-114 (133)
128 KOG1517 Guanine nucleotide bin 47.2 62 0.0013 43.6 8.5 103 935-1043 598-733 (1387)
129 KOG1077 Vesicle coat complex A 47.1 1.1E+02 0.0025 39.6 10.5 87 1011-1097 144-234 (938)
130 KOG1820 Microtubule-associated 46.1 3.4E+02 0.0074 36.6 15.2 133 301-449 308-447 (815)
131 KOG0368 Acetyl-CoA carboxylase 45.9 4.4E+02 0.0094 37.6 15.8 196 197-402 838-1080(2196)
132 KOG2062 26S proteasome regulat 45.3 4.1E+02 0.0089 35.1 14.9 212 558-794 516-743 (929)
133 PF12422 Condensin2nSMC: Conde 45.2 1.9E+02 0.0042 30.8 10.7 100 336-443 40-146 (152)
134 PF05804 KAP: Kinesin-associat 45.1 9E+02 0.02 32.3 21.9 218 950-1174 302-542 (708)
135 PF04118 Dopey_N: Dopey, N-ter 45.0 1.4E+02 0.0031 35.4 10.7 84 377-465 174-276 (307)
136 PF11732 Thoc2: Transcription- 44.0 60 0.0013 30.9 5.9 72 241-316 5-76 (77)
137 KOG2160 Armadillo/beta-catenin 44.0 83 0.0018 37.8 8.4 115 327-450 126-245 (342)
138 KOG0212 Uncharacterized conser 42.9 8.6E+02 0.019 31.4 29.6 369 632-1081 3-408 (675)
139 PF03965 Penicillinase_R: Peni 42.5 25 0.00054 35.3 3.4 92 1015-1113 20-113 (115)
140 KOG0166 Karyopherin (importin) 42.3 1.2E+02 0.0026 38.4 9.8 129 935-1068 154-297 (514)
141 PF05997 Nop52: Nucleolar prot 42.2 4.5E+02 0.0097 29.7 13.6 183 936-1132 4-211 (217)
142 PF08569 Mo25: Mo25-like; Int 41.7 1.5E+02 0.0033 35.7 10.3 114 961-1080 155-284 (335)
143 PF01347 Vitellogenin_N: Lipop 40.8 2.3E+02 0.0051 36.4 12.7 160 962-1134 418-601 (618)
144 PF14764 SPG48: AP-5 complex s 40.5 2.3E+02 0.0049 35.6 11.6 113 276-393 253-370 (459)
145 KOG1078 Vesicle coat complex C 39.7 9.5E+02 0.021 32.2 17.0 152 312-466 378-559 (865)
146 PF08631 SPO22: Meiosis protei 39.3 6.7E+02 0.014 29.1 18.5 177 208-396 58-245 (278)
147 PF02847 MA3: MA3 domain; Int 38.4 1.5E+02 0.0032 29.2 8.2 72 374-445 34-108 (113)
148 KOG1991 Nuclear transport rece 37.6 5.2E+02 0.011 35.2 14.6 79 346-449 724-804 (1010)
149 PF08167 RIX1: rRNA processing 37.4 2.3E+02 0.005 30.4 10.0 72 928-1004 20-96 (165)
150 KOG1243 Protein kinase [Genera 36.9 55 0.0012 42.3 5.9 139 930-1080 366-516 (690)
151 COG5369 Uncharacterized conser 36.8 1.2E+02 0.0026 38.3 8.4 123 952-1075 402-541 (743)
152 KOG1242 Protein containing ada 36.6 1.1E+03 0.023 30.7 30.0 201 928-1136 328-546 (569)
153 PF11864 DUF3384: Domain of un 35.7 9.9E+02 0.021 30.0 29.8 342 68-443 50-464 (464)
154 KOG2759 Vacuolar H+-ATPase V1 35.0 42 0.00091 41.0 4.2 68 977-1044 368-440 (442)
155 COG5537 IRR1 Cohesin [Cell div 35.0 1.2E+03 0.025 30.6 16.3 125 986-1116 285-420 (740)
156 PF14165 YtzH: YtzH-like prote 34.3 58 0.0012 31.6 4.2 40 645-684 23-62 (87)
157 PLN03076 ARF guanine nucleotid 34.0 1.3E+03 0.028 34.2 18.7 101 579-679 678-794 (1780)
158 PF05004 IFRD: Interferon-rela 33.7 2.3E+02 0.0049 33.7 10.0 109 929-1040 125-255 (309)
159 PF00514 Arm: Armadillo/beta-c 33.1 59 0.0013 26.3 3.6 26 1015-1040 14-39 (41)
160 KOG2933 Uncharacterized conser 32.9 2.6E+02 0.0056 33.4 9.8 116 309-439 109-228 (334)
161 KOG2149 Uncharacterized conser 32.6 2E+02 0.0044 35.2 9.3 72 1014-1092 59-134 (393)
162 PF14631 FancD2: Fanconi anaem 32.2 2.6E+02 0.0057 40.0 11.7 93 606-702 443-542 (1426)
163 cd03567 VHS_GGA VHS domain fam 31.9 1.8E+02 0.0038 30.7 7.7 86 995-1080 20-117 (139)
164 PF13251 DUF4042: Domain of un 31.4 6.1E+02 0.013 28.0 12.1 122 992-1118 2-155 (182)
165 PF12530 DUF3730: Protein of u 31.2 4.3E+02 0.0093 30.0 11.4 120 952-1072 52-183 (234)
166 PF02268 TFIIA_gamma_N: Transc 30.8 82 0.0018 27.5 4.1 29 651-679 13-41 (49)
167 COG5181 HSH155 U2 snRNP splice 30.6 1.2E+03 0.027 30.5 15.5 214 208-440 728-942 (975)
168 KOG0946 ER-Golgi vesicle-tethe 30.6 1.3E+03 0.029 31.1 16.1 181 228-447 40-243 (970)
169 KOG2038 CAATT-binding transcri 30.6 1.3E+02 0.0027 39.6 7.4 82 1015-1097 306-387 (988)
170 KOG2137 Protein kinase [Signal 30.5 7.2E+02 0.016 32.9 14.0 158 958-1117 366-538 (700)
171 KOG1243 Protein kinase [Genera 30.5 1.5E+02 0.0032 38.7 8.0 116 958-1077 314-435 (690)
172 PF12231 Rif1_N: Rap1-interact 30.0 1.1E+03 0.023 28.7 18.1 202 202-444 85-302 (372)
173 PF09759 Atx10homo_assoc: Spin 29.9 1.3E+02 0.0028 30.1 6.1 79 341-437 2-82 (102)
174 PF14838 INTS5_C: Integrator c 29.3 1.3E+03 0.028 30.8 16.1 53 223-278 192-245 (696)
175 PF14225 MOR2-PAG1_C: Cell mor 28.8 4.8E+02 0.01 30.4 11.3 86 264-356 133-219 (262)
176 PF08167 RIX1: rRNA processing 28.5 1.4E+02 0.0031 32.0 6.6 85 933-1021 67-159 (165)
177 PF11841 DUF3361: Domain of un 28.5 3.9E+02 0.0085 29.0 9.7 108 974-1081 10-133 (160)
178 COG1283 NptA Na+/phosphate sym 28.4 1.2E+03 0.026 30.1 15.3 121 1083-1220 376-498 (533)
179 PF01347 Vitellogenin_N: Lipop 28.1 1.4E+02 0.0031 38.4 7.8 164 939-1117 437-617 (618)
180 PF01417 ENTH: ENTH domain; I 27.0 1.8E+02 0.0038 29.6 6.7 70 374-443 37-119 (125)
181 PF05004 IFRD: Interferon-rela 25.9 1.2E+03 0.025 27.8 17.7 180 910-1096 65-278 (309)
182 PLN00047 photosystem II biogen 25.8 7.7E+02 0.017 29.1 12.0 35 1058-1093 50-84 (283)
183 PF11422 IBP39: Initiator bind 25.7 1.1E+02 0.0023 33.5 4.9 53 393-447 18-71 (181)
184 KOG2011 Sister chromatid cohes 25.6 1.1E+03 0.024 32.8 15.0 63 382-446 293-356 (1048)
185 PF14676 FANCI_S2: FANCI solen 25.3 8.4E+02 0.018 26.3 11.6 85 305-400 72-156 (158)
186 KOG2213 Apoptosis inhibitor 5/ 25.3 2E+02 0.0043 35.2 7.4 35 1005-1039 53-87 (460)
187 PF01417 ENTH: ENTH domain; I 25.2 1.2E+02 0.0027 30.8 5.2 62 989-1051 16-80 (125)
188 KOG0567 HEAT repeat-containing 25.1 4.6E+02 0.0099 30.8 9.9 109 912-1040 156-278 (289)
189 KOG2140 Uncharacterized conser 25.0 5.5E+02 0.012 32.7 11.1 107 248-358 199-311 (739)
190 cd03571 ENTH_epsin ENTH domain 24.8 2.4E+02 0.0053 29.1 7.2 69 374-442 35-115 (123)
191 KOG4199 Uncharacterized conser 24.7 8.7E+02 0.019 29.6 12.2 161 561-742 189-358 (461)
192 PF05327 RRN3: RNA polymerase 24.6 1.6E+03 0.035 29.0 24.8 169 278-463 26-208 (563)
193 PF06133 DUF964: Protein of un 24.3 3E+02 0.0065 27.0 7.6 65 1163-1229 2-70 (108)
194 cd03561 VHS VHS domain family; 24.2 2.9E+02 0.0064 28.5 7.8 74 375-448 36-115 (133)
195 KOG2956 CLIP-associating prote 23.6 1.4E+03 0.03 29.1 14.1 139 952-1096 301-453 (516)
196 KOG1293 Proteins containing ar 23.4 4.7E+02 0.01 34.1 10.5 127 306-445 402-533 (678)
197 PF00514 Arm: Armadillo/beta-c 23.1 92 0.002 25.2 3.1 28 976-1004 13-40 (41)
198 KOG2274 Predicted importin 9 [ 23.0 9.4E+02 0.02 32.7 13.2 145 950-1098 462-624 (1005)
199 KOG1949 Uncharacterized conser 23.0 5.7E+02 0.012 33.8 11.0 135 316-462 211-350 (1005)
200 PHA00438 hypothetical protein 22.8 2.3E+02 0.0049 27.1 5.8 70 209-290 2-71 (81)
201 KOG2956 CLIP-associating prote 22.7 1.6E+03 0.036 28.4 14.8 193 174-386 302-507 (516)
202 PF07539 DRIM: Down-regulated 22.2 7.9E+02 0.017 26.0 10.5 114 597-722 16-140 (141)
203 PF05804 KAP: Kinesin-associat 22.1 2E+03 0.043 29.2 19.9 122 975-1117 411-538 (708)
204 PF11838 ERAP1_C: ERAP1-like C 22.1 1.3E+03 0.027 26.8 15.4 85 1062-1165 141-225 (324)
205 PF01603 B56: Protein phosphat 21.5 1.5E+03 0.033 27.9 14.5 167 1052-1226 135-317 (409)
206 smart00543 MIF4G Middle domain 21.4 9.9E+02 0.021 25.3 12.2 137 225-388 31-177 (200)
207 cd03569 VHS_Hrs_Vps27p VHS dom 21.3 3.6E+02 0.0077 28.4 7.8 103 995-1097 23-133 (142)
208 PF12074 DUF3554: Domain of un 21.3 1.4E+03 0.031 27.1 16.9 193 248-448 6-238 (339)
209 cd05130 RasGAP_Neurofibromin N 20.8 1.3E+03 0.028 27.9 13.2 124 1008-1153 196-326 (329)
210 PF02854 MIF4G: MIF4G domain; 20.4 1E+03 0.022 25.1 11.5 77 300-387 98-185 (209)
No 1
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.1e-235 Score=2118.16 Aligned_cols=1187 Identities=40% Similarity=0.601 Sum_probs=1050.9
Q ss_pred CCccccccCChhhhhhccCcCCCCCcceecCCCCCCCCChhhHHHHhhhccccccccCcccccccchhHHHHHHHhcCCC
Q 000705 1 MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSS 80 (1342)
Q Consensus 1 m~~~F~iP~~~~dLl~~~~~~~~~~~y~V~~~~~~~~l~~~~L~~~~~~~~~~~~~~~p~~I~d~~~FD~lysll~~f~~ 80 (1342)
|..+|+.|++..++. .++ ++.+|+|+++.++.+++. ++.++. . ..+..+|+++.| |||++||++++|.+
T Consensus 1 ~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~e~~~-k~~~~~--~--~~~~~~~~~~~d--~ld~vysl~~~f~s 69 (1251)
T KOG0414|consen 1 QDLQFLLPLSEYDLI---NSS-GDPQYVVKEIFSAQELPV-KLDEFD--R--SVRLMDPDFDLD--HLDTVYSLLEDFES 69 (1251)
T ss_pred CcchhhcCCCHHHHH---hcc-CCHHHHHHhcccccccch-hHHHHH--h--hhhhcCchhhHH--HHHHHHHHHhchhh
Confidence 568999999999998 666 778999999999999999 999998 5 677889988888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---Cc
Q 000705 81 LSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP---KV 157 (1342)
Q Consensus 81 l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~~~~~~---~~ 157 (1342)
++|++|+.+.+++.++++++...+...+.......+..+ .+|+||+|||.|+...++...+....+.... ..
T Consensus 70 l~~s~q~~~~~~l~s~lsvls~~~~~~~~~~~~~~~~~~-----~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~ 144 (1251)
T KOG0414|consen 70 LAPSLQNWLSEFLRSNLSVLSADLDAILDSTACLFTDLS-----NSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNV 144 (1251)
T ss_pred cCHHHHHHHHHHHHHHHHhhccccccchhhhhccccccc-----HHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhh
Confidence 999999999999999999999999998877542211111 7899999999999999999988765433211 23
Q ss_pred ccccccC--CCCCCccchhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Q 000705 158 TASTRKK--QPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRII 235 (1342)
Q Consensus 158 ~~k~kK~--~~~~~~~W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il 235 (1342)
.||+||. ....+|+|+.+|+++|..|.++|++||++||.+++++|+|+++|++|||+++||+.+.|+.+++++||+||
T Consensus 145 ~~k~kk~~~n~~~~~~~e~~r~~~l~~i~~lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~~k~~~t~~ai~~il 224 (1251)
T KOG0414|consen 145 SGKLKKQSGNLASGFNWEKQRNKLLCLIAQLLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHVNKNSSTKDAIFRIL 224 (1251)
T ss_pred hccccCcccchhhccccccccchHHHHHHHHHHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 3454444 33446999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHH
Q 000705 236 GACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVEL 315 (1342)
Q Consensus 236 ~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~L 315 (1342)
|.++|+|||..+++++|+|+|+||+|++.+.|+++..+..+||+.+|++.|||+|+..+|++ +|++|+|+++.||++|
T Consensus 225 g~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~el 302 (1251)
T KOG0414|consen 225 GSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVEL 302 (1251)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHH
Q 000705 316 ADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSR 395 (1342)
Q Consensus 316 ae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRsk 395 (1342)
|+++|++++++|+.|++|||+|||+|||||+++|||+|.+.++++++++..|+. |+.|+++|.||++|+|||||+|
T Consensus 303 S~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~----r~~~le~l~erl~Dvsa~vRsk 378 (1251)
T KOG0414|consen 303 SERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSL----RDELLELLRERLLDVSAYVRSK 378 (1251)
T ss_pred HHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH----HHHHHHHHHHHhhcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcc-cCC
Q 000705 396 VLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNG-LEP 474 (1342)
Q Consensus 396 vLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L~~~~~~~~Le~~~~~L~~-l~~ 474 (1342)
|||+|.+||+.+++|+++|++|+++|+|||+|||++|||+||||+..+|.+|||+++++.+++.+.+|++..+|++ .++
T Consensus 379 VLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~ 458 (1251)
T KOG0414|consen 379 VLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELES 458 (1251)
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888873 322
Q ss_pred CCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 000705 475 DIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLR 554 (1342)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~dal~ 554 (1342)
.....++. .+.....+..+..++.+.+.+....+....+..-++.. .......+.+..++++|++++++||+|++.
T Consensus 459 t~~l~~e~---~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~-~~~~~~~s~~~~~~i~q~~~~vq~l~d~~s 534 (1251)
T KOG0414|consen 459 TEHLEEEE---MTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC-LLENEVESVPAENEIMQLKALVQFLEDAIS 534 (1251)
T ss_pred ccccchhh---ccchhhhhcccceeechhhhhhhccccccccccchhhh-hhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 11111100 00000000000001111111111000000000000000 000011134556689999999999999999
Q ss_pred HHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhcccCccHHHHHHHHHHHhhcCCC----
Q 000705 555 FSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKS---- 630 (1342)
Q Consensus 555 Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd~~I~~~vi~ay~~Ly~~~~---- 630 (1342)
|++.|++|+|.+.+||+|+|++||.|+|+||++|++|||+||+.||||||||||++|++|+++|++||++|||+++
T Consensus 535 f~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~ 614 (1251)
T KOG0414|consen 535 FSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSK 614 (1251)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhh
Q 000705 631 ---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAV 707 (1342)
Q Consensus 631 ---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~I 707 (1342)
++.+|+||+.++.+++.||++|||+++++|+++|.|++.||++||++|+.+..+++.+++|||++||||+|+++|+|
T Consensus 615 ~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~I 694 (1251)
T KOG0414|consen 615 ASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSI 694 (1251)
T ss_pred hhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhh
Confidence 47889999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccc--ccccccccCcchHHHHHHHHHc-cCCCCCCchHHHHHHHHH
Q 000705 708 LGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQE--DKKKLLLSYGSRVFATLESLIT-GFWLPDNIWYTAADKAIS 784 (1342)
Q Consensus 708 v~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~--~k~~~r~~~~~~if~~L~~~l~-~~~~~~~~W~~~aeqaIn 784 (1342)
+.+|++.|++||+|+++..+..|++|+|++..|..+. ..+.++++.+|.+|+.|..++. +|..++++||+++++||.
T Consensus 695 v~~~~~~lv~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais 774 (1251)
T KOG0414|consen 695 VLANLDLLVQIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAIS 774 (1251)
T ss_pred hhhhhHHHHHhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999843 3344899999999999999998 677788999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhcccC-CCCCCCCCCCCCCCCCCCccHhHHHH-HHHHHHHHHHHHHHHHHHHHH-H
Q 000705 785 AIYTIHPTPETLAVDLVKKSLSAVFDYVG-GEEPHNGIDCVGTSMPTSVQVSKLGR-YLFILSHIAMNQLVYIESCVC-E 861 (1342)
Q Consensus 785 aIy~l~~~Pd~l~~~iIk~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~Lsq-llFivGhVAlk~lV~lE~~~~-~ 861 (1342)
+||.||+.||++|..||+.++.+.|+... +..+.++++..+. ...++..+.. |+|++||||+||+||||.|++ +
T Consensus 775 ~Iy~is~~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~---~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~ 851 (1251)
T KOG0414|consen 775 AIYSISMLPEVLATQLIRKLLKQDFESLECEADTITDDPRKSD---ALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKE 851 (1251)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHhhhhhhhhccccCCccccc---ccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 3222222222211 2567888999 999999999999999999999 6
Q ss_pred HHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc--cchhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHH
Q 000705 862 IRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA--ASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLS 939 (1342)
Q Consensus 862 lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~--t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~ 939 (1342)
+|||+...+..+.+.++...+ .+..+++...+.|+|++ |+||+++|+|+.|||+||+||+ ++|||+|+|+|+
T Consensus 852 ~kRr~~~~~~~e~k~~N~~e~---~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~ 925 (1251)
T KOG0414|consen 852 FKRRKIKTELEEKKDKNQREN---LSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVV 925 (1251)
T ss_pred HHHHHHHHHHHhhcccCchhh---hccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHH
Confidence 999998444333222211111 02234456778899988 8999999999999999999998 999999999999
Q ss_pred HHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHh
Q 000705 940 KFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMY 1019 (1342)
Q Consensus 940 ~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly 1019 (1342)
++|+||+.| +||.||+||++|||||||+|++||+.|+|+|||+|+++|+|.||||+|+|||||++||||++||||++||
T Consensus 926 e~c~n~~~~-sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly 1004 (1251)
T KOG0414|consen 926 EGCRNPGLF-SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLY 1004 (1251)
T ss_pred HHhcCCCcC-CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC
Q 000705 1020 ARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ 1099 (1342)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~ 1099 (1342)
++|+|+++.||+||++||||||+|||||||||+++||+||+||+++|+++||.||+||+.|+ |+|||++|||||||||+
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHH
Q 000705 1100 NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSV 1179 (1342)
Q Consensus 1100 ~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V 1179 (1342)
++++++|++||+||+++|+|| | ||+..+++| |||++|||+||++||++++|.+|.+|++++.|
T Consensus 1084 ~l~~~~~~~vm~~li~~ikkd---e--------rf~~~~~~r------ycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v 1146 (1251)
T KOG0414|consen 1084 NLEEESYKTVMEFLIGLIKKD---E--------RFSADRIER------YCLSLLTTTERGSKKLKDLFTALAKKVQNDSV 1146 (1251)
T ss_pred cccchhhHHHHHHHHHHhccc---c--------cccccccch------hhhcccccchhhhhhHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999 2 999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhhchhHHHHHHHHHHhhhhhccCCCcccccc
Q 000705 1180 MDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVADRN 1244 (1342)
Q Consensus 1180 ~~~F~~Ii~k~kk~~k~e~K~~i~EfE~kl~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1342)
|++|+.|++|.+|++|||+|++++|||+||++||..++++ +..+|.+.+++..+++...+.-
T Consensus 1147 ~~~f~diis~~sk~a~pe~ka~~~efe~ki~~~h~~~~~~---~~~~Q~~e~~~~~~~~~~~~~r 1208 (1251)
T KOG0414|consen 1147 YNNFIDIISKLSKFAKPELKAVIDEFEEKIKECHSFKKDE---RHKAQLVEELTPRLKKCSTGSR 1208 (1251)
T ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHhcchhH---HHHHHHHHHHhHHhhccccccc
Confidence 9999999999999999999999999999999999999888 6677888888877766654433
No 2
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=8.4e-186 Score=1596.83 Aligned_cols=1066 Identities=22% Similarity=0.324 Sum_probs=934.7
Q ss_pred hhHHHHhhhccccccccCccccc-ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCc
Q 000705 41 SELVEFVKGVSFDLSDKELFCIE-EQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETP 119 (1342)
Q Consensus 41 ~~L~~~~~~~~~~~~~~~p~~I~-d~~~FD~lysll~~f~~l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~ 119 (1342)
.+++..++.. ++ + ..|. +||..+.++.++|+|+++++.++.++.+++.++++.....+..++++.- + -.
T Consensus 29 ~~ln~iid~l--~v---~-~q~~~~~d~le~l~~lc~~f~~l~~~l~~~is~L~ts~vs~~s~d~~~~vS~n~---n-ft 98 (1128)
T COG5098 29 RELNVIIDQL--AV---S-EQIDASPDSLEALIDLCHDFPHLQKELEILISKLKTSTVSDNSEDYNYLVSHNV---N-FT 98 (1128)
T ss_pred HHHHHHHHHH--Hh---h-ccccCChHHHHHHHHHHhcchhhCHHHHHHHHHHHHhhccchhHHHHHHHhcCC---C-CC
Confidence 3677777433 22 2 4443 7789999999999999999999999999999999999999998887741 2 12
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CcccccccCCCCCCccc--hhhHHHHHHHHHHHhccccccccC
Q 000705 120 VLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP-KVTASTRKKQPVNSWNW--DPQRGRILNLIANSLEINLPLLFG 196 (1342)
Q Consensus 120 ~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~~~~~~-~~~~k~kK~~~~~~~~W--~~qr~~~L~~l~~~L~l~l~~Lw~ 196 (1342)
.+++ + |+-|+|+++.++............. -...|++|+.+....+| .+|.+..|..+..+++..+++.|.
T Consensus 99 ipQ~-n-----le~~g~~fqll~s~l~~~l~v~~s~sTn~~k~~kkndsan~~~~~~n~me~LL~~Iv~l~~~~ls~~~~ 172 (1128)
T COG5098 99 IPQC-N-----LENKGRIFQLLKSKLNSPLEVAPSLSTNVSKLEKKNDSANVEKRDCNQMEDLLPKIVDLIRGCLSNSRE 172 (1128)
T ss_pred Cccc-c-----ccchhhHHHHHHHhccChhhhhhhhhchhhhcCcCCCccccccccchHHHHHHHHHHHHHHHHhhcccc
Confidence 2333 3 6689999999888876543321111 11236667754444445 489999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000705 197 SSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKK 276 (1342)
Q Consensus 197 ~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~ 276 (1342)
++.+.+-|+.||++|.|.+||.+...|+.+.+..+|+|+|.+++.|||...+...+++.|+||+|++.++||++..+..+
T Consensus 173 Ts~e~d~fl~Lfl~p~~~llE~e~~~kv~s~~~~~~rI~g~~v~~hnh~~~~~~~~~snl~yf~hls~~~aeli~~isde 252 (1128)
T COG5098 173 TSEEMDKFLFLFLEPTKVLLERERDSKVRSRLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDE 252 (1128)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 000705 277 YADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKA 356 (1342)
Q Consensus 277 ~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~ 356 (1342)
|++.++.++|+++++..+|++ .|.+|||.+|.||.+||+++|.+|++|+.++..+||+|||+||||++|+|||+|...
T Consensus 253 ~n~~~l~edi~~~l~~l~fn~--~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~ 330 (1128)
T COG5098 253 LNRCALKEDIPVLLKNLSFNL--PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF 330 (1128)
T ss_pred hhhhhhhcccHHHHhhceeec--ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHH
Q 000705 357 FKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSA 436 (1342)
Q Consensus 357 l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~A 436 (1342)
.++++.-++.+++ .+.+.++|.||+.|.+||||+||||++.+||+.+.+-.+++++++++++|||+|||+.|||||
T Consensus 331 ~~d~qm~e~~~~~----~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrna 406 (1128)
T COG5098 331 KKDGQMVEHYKQK----LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNA 406 (1128)
T ss_pred hcchhhHhhHHHH----HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888787888888 899999999999999999999999999999998877778899999999999999999999999
Q ss_pred HHHHHHHHhhCCC----CCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhh
Q 000705 437 LNLLVMMLQHNPF----GPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQE 512 (1342)
Q Consensus 437 iqLL~~lL~~nPf----g~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~e 512 (1342)
|+|+++||.+||| |++|++..|++-|...+.+|+.+.+... + .+.+++.|.|+.+.+..+.-+
T Consensus 407 ikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~q-e----------~l~D~E~Eveqd~~q~~t~le-- 473 (1128)
T COG5098 407 IKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQ-E----------TLCDGEKEVEQDEGQCRTELE-- 473 (1128)
T ss_pred HHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhh-c----------cccchHHhhhhhhhhhhhhhc--
Confidence 9999999999999 6899999999999999999987754221 1 111222111111110000000
Q ss_pred hcccCCCCCcccccccC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 000705 513 SLTDSCLPLADEGIADK---DSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCK 589 (1342)
Q Consensus 513 a~~~~~~~~~~~~~~~~---~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~ 589 (1342)
+.|..++|.-.+. ..++.....++|+++++.||+||+.|++.|++..+.+.+||++||++||.|+|+|||.|+
T Consensus 474 ----~~~n~~~es~ien~ve~ina~~t~~lmKl~l~~~yY~da~qfidi~~~~~~~Is~LLf~knk~EV~EsmdF~vlc~ 549 (1128)
T COG5098 474 ----GSFNKSAESRIENEVENINATNTSVLMKLKLMIVYYEDANQFIDIMKEIQDNISTLLFGKNKTEVNESMDFIVLCF 549 (1128)
T ss_pred ----cccccchhhhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 0011111100000 012455778999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchHHHHhhhcchhcccCc-----cHHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHhhcCcchhhHHHHH
Q 000705 590 QFQIDGAEACLHKMLPLVLSQDK-----SIYEAVENAFITIYVRKS--------PVETAKNLLNLAIDSNIGDQAAMEFI 656 (1342)
Q Consensus 590 ~f~I~~a~~girkML~LVWskd~-----~I~~~vi~ay~~Ly~~~~--------~~~ia~nLi~L~~~at~~dl~sLEeL 656 (1342)
.|||+++..||+||+||||.|+. +|..||+.||+.||+.+| +.++|+|||.++++++++||+|||++
T Consensus 550 ~f~I~~S~~~ikkm~hLvW~kgt~deg~si~~hvlscyk~lf~~~p~ns~~~e~a~~iarnlinls~~aslaeLssleql 629 (1128)
T COG5098 550 YFRIDGSREAIKKMFHLVWTKGTDDEGTSIELHVLSCYKLLFQMKPNNSSLFEFAKEIARNLINLSFEASLAELSSLEQL 629 (1128)
T ss_pred HhcccchHHHHHHHHHhheecccCCCCcchhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcccHHHHHHHHHhHHHH
Confidence 99999999999999999999964 599999999999999998 79999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHH
Q 000705 657 VGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACI 736 (1342)
Q Consensus 657 l~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~Iv~~~l~~l~~iglg~~~~~D~~lar~~c~ 736 (1342)
+++||+.+.|+..||+.||++|+.++.++|..|++|+|+++||++.++..++..++++++.||+|..|-.|+.|+||+|+
T Consensus 630 l~mm~~~~yid~~vIs~Lw~~ys~Qk~d~s~~q~~gsii~iGml~l~d~~~~l~gl~~ll~iglg~~gl~dl~L~rY~ci 709 (1128)
T COG5098 630 LGMMYARRYIDKTVISELWSMYSLQKFDFSLLQASGSIIHIGMLLLVDMFHSLVGLSTLLLIGLGVEGLLDLMLSRYKCI 709 (1128)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhccchhHHhhccceEEecchhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 99999999999999999999998788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccc--ccccCcchHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCC
Q 000705 737 AIQRLSQEDKKK--LLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGG 814 (1342)
Q Consensus 737 aL~~l~~~~k~~--~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~ 814 (1342)
|+.|++...+.. ...+..|-+.++|...+..+ +-+.+||+++|||+.+||.++..||.+|++||...+.+.||.+.+
T Consensus 710 a~~Rv~~~~~~~~~In~~l~~~l~kkl~~~vv~~-t~s~ey~~~~eqa~sai~~~~k~pD~l~t~li~~~t~~~fgkp~e 788 (1128)
T COG5098 710 AQIRVRQRVKFDDEINEVLAKNLAKKLEHQVVDV-TVSTEYSISTEQAKSAIMLLEKLPDMLRTSLIAISTVGCFGKPHE 788 (1128)
T ss_pred HHHHHHHhccccHhhhHHHHHHHHHHHHHHhhcc-cccceeccchHHHHHHHHHHHhCchHHHHHHHHHHHHHhcCCCcc
Confidence 999998655433 44566777888887777764 568899999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccc
Q 000705 815 EEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTS 894 (1342)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 894 (1342)
+++-.-. .+ .-....|+|++|+|||||||++||+|.|+.++|||++..+...+.+. ..+. -++++.+.
T Consensus 789 eds~~~l-e~------~er~v~l~~l~f~Vg~vaIk~lVy~e~ceaefkrrki~ae~~~~v~n-~~~~---~nns~qd~- 856 (1128)
T COG5098 789 EDSMQYL-EE------LERLVKLNRLKFKVGKVAIKPLVYEERCEAEFKRRKISAELEENVDN-DDSI---LNNSAQDR- 856 (1128)
T ss_pred hhHHHHH-HH------HHHHHhhhceeeEecceeehHHHHHHHHhhHHhhhhhHHHHHhhccC-CCCc---Cccchhhc-
Confidence 4321000 00 12357899999999999999999999999999999996655322211 1110 01122222
Q ss_pred hhhhhccc--cchhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH
Q 000705 895 INAELGLA--ASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY 972 (1342)
Q Consensus 895 ~~~Elgl~--t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~ 972 (1342)
.|++++ |+||++.|+++.|+|+|++||+ +++|++|+|+|+++|+|.+++ +||.||.||.+||.||||+|.+|
T Consensus 857 --ge~~~IggtsEddf~da~~fikE~ElLyGe---ksvLs~F~pvVeE~csn~~~~-sd~~lq~aA~l~L~klMClS~~f 930 (1128)
T COG5098 857 --GESSRIGGTSEDDFVDAFFFIKEKELLYGE---KSVLSNFKPVVEEGCSNSSRF-SDEELQVAAYLSLYKLMCLSFEF 930 (1128)
T ss_pred --chhhhccCCCHHHHHHHHHHHHHHHHhhch---hHHHhhhhHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHhHHH
Confidence 277777 9999999999999999999998 999999999999999999999 99999999999999999999999
Q ss_pred HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH
Q 000705 973 CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI 1052 (1342)
Q Consensus 973 c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l 1052 (1342)
|.+|+|+|+|+||++|+|.||+|+||+||||++||+|++|++|.++|++|.|++..|||||+|++++||+.|++|||||+
T Consensus 931 c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGql 1010 (1128)
T COG5098 931 CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQL 1010 (1128)
T ss_pred HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC-CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000705 1053 NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ-NLKTESFCNIMQLLIGFIKKDKQMEALVEKLC 1131 (1342)
Q Consensus 1053 ~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~-~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc 1131 (1342)
+.||+||.|||.+|++||+.||+++|+|+ |++||+|+||+|.||.. ....+.|+.|++||.+||+|+||+.||.|+|.
T Consensus 1011 g~ma~~L~deda~Isdmar~fft~~a~Kd-Nt~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~ 1089 (1128)
T COG5098 1011 GKMALLLTDEDAEISDMARHFFTQIAKKD-NTMYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLF 1089 (1128)
T ss_pred hhhHhhccCCcchHHHHHHHHHHHHHhcc-cchhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999844 55667799999999999999999999999999
Q ss_pred hhhhcccchhhHHHHHHHHhccCCChhHHHHHHH
Q 000705 1132 NRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIE 1165 (1342)
Q Consensus 1132 ~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e 1165 (1342)
.|+..|++++||.+++|+|+.|||+-.++.+|++
T Consensus 1090 ~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll~ 1123 (1128)
T COG5098 1090 LRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLN 1123 (1128)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCccccchhhHhh
Confidence 9999999999999999999999999999999987
No 3
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=100.00 E-value=3.7e-42 Score=366.54 Aligned_cols=165 Identities=50% Similarity=0.758 Sum_probs=160.7
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChhHH
Q 000705 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQRIS 1067 (1342)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~I~ 1067 (1342)
+|.||+|+++++||||+||||++|||++.+|.+|+|+++.||++|+++|||||++|||||||++ ++|+.||.|+|++|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhcc-CCchhhhhhhHHHhhccCC-------CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccc-
Q 000705 1068 NLAKLFFHELSKK-GNNPIYNLLPDILGKLCNQ-------NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVT- 1138 (1342)
Q Consensus 1068 ~~a~~ff~eL~~K-~~n~iyn~~pdiis~Ls~~-------~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~- 1138 (1342)
++|+.||.|++.| +||+|||+|||+|++|++. ..+.++|+.||+||++||+||||.++|++|||+||..+.
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~~ 160 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAVV 160 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999 8899999999999999864 478999999999999999999999999999999999999
Q ss_pred --chhhHHHHHHHHhcc
Q 000705 1139 --DIRQWEYISYCLSQL 1153 (1342)
Q Consensus 1139 --~~rqwrdiafcLslL 1153 (1342)
++++|+|++|||+.+
T Consensus 161 ~~~~~~~~d~~~~l~~~ 177 (178)
T PF12717_consen 161 DEDERVLRDILYCLSCL 177 (178)
T ss_pred cccHHHHHHHHHHHHCc
Confidence 999999999999986
No 4
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=100.00 E-value=1.3e-31 Score=320.77 Aligned_cols=653 Identities=15% Similarity=0.149 Sum_probs=397.1
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCC
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQL 453 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L 453 (1342)
.-.+.+++..|+.|.-|-||.+||..++++.+...=- .-..++...+-...|.--.||+++..++.. ..-||+.+-
T Consensus 470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~--~~~sIl~~~inS~~d~~fs~ves~~~~~~~--~~~~~s~~~ 545 (1529)
T KOG0413|consen 470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR--EAFSILCATINSEMDEKFSAVESLEDLNVS--GKAPSSKTK 545 (1529)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc--chHHHHHHhcCCccccchhHHHhchhhhhc--ccCcccccc
Confidence 4567889999999999999999999999999863221 123788888889999888888888776543 345766555
Q ss_pred ChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhh------hhhc-ccCCCCCccccc
Q 000705 454 RIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQ------QESL-TDSCLPLADEGI 526 (1342)
Q Consensus 454 ~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~------~ea~-~~~~~~~~~~~~ 526 (1342)
...+|-..-.+... +.. -+-.+++|+..++ -.+. .+
T Consensus 546 ~tt~~l~~~~~ii~-------------------------d~~--~~~~~~ge~~~e~~V~~mi~Rr~~~d---------- 588 (1529)
T KOG0413|consen 546 KTTDLLLDEQQIIQ-------------------------DFK--LKLMNKGETRVEKDVVYMIVRRLSTD---------- 588 (1529)
T ss_pred cchhhcCcchhhhh-------------------------hcc--hhhhhccccHHHHHHHHHHHHHhccC----------
Confidence 54443321111110 000 0011111111111 0000 01
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHh-----hccCcchHHHHh
Q 000705 527 ADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCK-----QFQIDGAEACLH 601 (1342)
Q Consensus 527 ~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~-----~f~I~~a~~gir 601 (1342)
..++-.....++++-|+.+.= -.-..+..+-.+..|..+.-.+-+.-+.+=|+... .|.|.. .-++
T Consensus 589 ------~k~~v~k~a~~~l~S~l~~cD-~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~--~wl~ 659 (1529)
T KOG0413|consen 589 ------DKAPVKKAACSLLKSYLSYCD-EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSS--KWLH 659 (1529)
T ss_pred ------CCcccchhhHHHHHHHHhccc-hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhH--HHHH
Confidence 011122234455555554421 11222333566666777777777777776665443 333332 2344
Q ss_pred hhcchhcccCccHHHHHHHHHHHhhcCCC--hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 000705 602 KMLPLVLSQDKSIYEAVENAFITIYVRKS--PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFC 679 (1342)
Q Consensus 602 kML~LVWskd~~I~~~vi~ay~~Ly~~~~--~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~ 679 (1342)
-..++|-..+..|.++...-.-++...-. ...+||-|+..+...+. ....|+.++..|+++..+++.+++..-+.-
T Consensus 660 ~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~-~s~yl~~~~h~w~~~~k~~~t~~d~~~~hs- 737 (1529)
T KOG0413|consen 660 TLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTN-HSQYLMSTLHDWVREKKVKRTVMDSMKQHS- 737 (1529)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchhhhhhhhccc-
Confidence 55556667778888888775555543311 34599999999888777 889999999999999999999998876652
Q ss_pred ccCCCCCHHhHHHHHHHHHHHhccChhhhhhh-HHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccccccCcchHH
Q 000705 680 FNVSGTTPEKSRAALSVLCMAAKSSAAVLGSH-LQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVF 758 (1342)
Q Consensus 680 ~~~~~~s~~~~r~Al~lL~Mia~~~~~Iv~~~-l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if 758 (1342)
.-+..-+||++++-++..-+.+-.+. +..-. .++ ..|- +..|.-.++..++.-++. .-....
T Consensus 738 ------G~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~--~~s---~~~N-~~~~L~hI~~~i~~i~~~-----l~s~~v 800 (1529)
T KOG0413|consen 738 ------GSEKLDGAWMVFSQLCVQFEQVDFSIETFSRV--DLS---RESN-LVQYLIHIIENIKKIDDD-----LKSDLV 800 (1529)
T ss_pred ------CcccCcchHHHHHHHHhcccccceeeeccccc--ccc---hhhh-HHHHHHHHHHHHHhhhhc-----ccHHHH
Confidence 23556799999999988766522111 11111 111 1222 444555555544433221 112344
Q ss_pred HHHHHHHccCC-CCCCch-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCC--CC--CCCCCCCCCCCCCc
Q 000705 759 ATLESLITGFW-LPDNIW-YTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEE--PH--NGIDCVGTSMPTSV 832 (1342)
Q Consensus 759 ~~L~~~l~~~~-~~~~~W-~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~--~~--~~~~~~~~~~~~~~ 832 (1342)
..+...+.... .+...| +.+--.+.+.|-.+|-+--..-..-|..++.+.|.-..... .. ..-.+.+ ...
T Consensus 801 d~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s----~~~ 876 (1529)
T KOG0413|consen 801 DTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNS----ESQ 876 (1529)
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcc----hhH
Confidence 45555444211 122223 34444555555555432222211222222222221100000 00 0000000 001
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc--cchhhhhh
Q 000705 833 QVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA--ASEDAKLD 910 (1342)
Q Consensus 833 ~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~--t~eD~~~d 910 (1342)
....++.+.|..|.+++- +.. .+ ...-+-++ +.+---+|
T Consensus 877 ~~~l~~~y~v~~~~~~ql-------~P~----ar----------------------------~~K~~~lLv~s~~~gssD 917 (1529)
T KOG0413|consen 877 ERLLCTAYNVAFSYSPQL-------VPH----AR----------------------------LGKTLSLLVNSTENGSSD 917 (1529)
T ss_pred HHHHHHHhhcccccccee-------ccc----hh----------------------------ccceeeeeeeeeccCCCC
Confidence 111122222222222110 000 00 00000111 00000001
Q ss_pred hhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCCh
Q 000705 911 TLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSE 990 (1342)
Q Consensus 911 ~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~ 990 (1342)
+= -.+ ++|.+=+-.=-| =.++|.. . ..+.+|+++++||+|+|+.+....++.+|+|.+.||.+...
T Consensus 918 a~--------htp-~tq~se~p~sqp-~~~v~g~--~--~~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~ 983 (1529)
T KOG0413|consen 918 AP--------HTP-PTQLSEVPSSQP-SSKVEGA--M--FSDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAH 983 (1529)
T ss_pred CC--------CCC-ccchhhCcccCC-Ccccccc--c--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHH
Confidence 10 011 111110000000 0012221 1 36789999999999999999999999999999999999999
Q ss_pred hhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChhHHHH
Q 000705 991 IVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQRISNL 1069 (1342)
Q Consensus 991 ~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~I~~~ 1069 (1342)
.||+|+||++||+|++|+-.+|.|+|.|.+||+||++.|||+|+..||.|++.|+|||+|.| .+|...|+|+++.|+++
T Consensus 984 aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~ 1063 (1529)
T KOG0413|consen 984 AIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRND 1063 (1529)
T ss_pred HHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 69999999999999999
Q ss_pred HHHHHHHHh-ccCCchhhhhhhHHHhhccCC-------------------------CCChhHHHHHHHHHHhhhhhhhhH
Q 000705 1070 AKLFFHELS-KKGNNPIYNLLPDILGKLCNQ-------------------------NLKTESFCNIMQLLIGFIKKDKQM 1123 (1342)
Q Consensus 1070 a~~ff~eL~-~K~~n~iyn~~pdiis~Ls~~-------------------------~~~~~~f~~I~~fLl~~i~KdKq~ 1123 (1342)
|+++|.++. .+.||.+||+|+++|.+|++. +....+...||+||+..++ |+|.
T Consensus 1064 a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~-de~r 1142 (1529)
T KOG0413|consen 1064 AKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLD-DESR 1142 (1529)
T ss_pred HHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcC-hHHH
Confidence 999999855 468999999999999999852 1334457789999999995 7799
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHHH
Q 000705 1124 EALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKL 1163 (1342)
Q Consensus 1124 e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL 1163 (1342)
....-|||+|+-.+ |+-+.||+++=...-|
T Consensus 1143 f~v~~kiC~~Ila~----------~~dG~l~~~D~~~q~l 1172 (1529)
T KOG0413|consen 1143 FDVKMKICQRILAP----------IVDGELDFSDYNVQCL 1172 (1529)
T ss_pred HHHHHHHHHHHHHH----------HhcCcCChhhccHHHH
Confidence 99999999999998 8888999866555443
No 5
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=100.00 E-value=2.1e-33 Score=297.68 Aligned_cols=162 Identities=33% Similarity=0.519 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----cCCCC-
Q 000705 81 LSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNIS----SNNNP- 155 (1342)
Q Consensus 81 l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~----~~~~~- 155 (1342)
||++++.+++|+|+|+++.++.++...++.+ + + .+.+..|||+||||+|||+|++..+|++.. +....
T Consensus 1 L~~~~~~~l~dll~s~l~~l~~~~~~~l~~~----~--~-~~~~~~~r~aLkmy~yLl~~l~~~~e~~~~~~~~~~~~~~ 73 (171)
T PF12922_consen 1 LSPSLKNQLLDLLCSSLSNLSDSIQSLLESS----D--D-EDSRASHRNALKMYGYLLHWLLEALEKEASAKSSKSASKK 73 (171)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----c--c-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 6899999999999999999999999999875 1 2 455599999999999999999999996421 11111
Q ss_pred --CcccccccC--CCCCCccchhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHH
Q 000705 156 --KVTASTRKK--QPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDAL 231 (1342)
Q Consensus 156 --~~~~k~kK~--~~~~~~~W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~i 231 (1342)
.++++++|+ ...+.|+|++||+++|.+|.++|++||++||+|+++||+||+||+||||++||||+++|++++|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~w~~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~i 153 (171)
T PF12922_consen 74 SGKGKKKKKKKKKKKEESWDWESQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAI 153 (171)
T ss_pred cccCCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHH
Confidence 111122222 5677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhH
Q 000705 232 CRIIGACATKYHYIEQSC 249 (1342)
Q Consensus 232 f~il~~~vk~y~h~~~~~ 249 (1342)
|+|||++||+|||+.++|
T Consensus 154 f~il~~~vk~h~h~~~~q 171 (171)
T PF12922_consen 154 FRILGTAVKKHNHALSAQ 171 (171)
T ss_pred HHHHHHHHHHcccccccC
Confidence 999999999999999875
No 6
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.4e-09 Score=135.52 Aligned_cols=245 Identities=20% Similarity=0.265 Sum_probs=183.6
Q ss_pred hhhhhHHHHHhhhccCC-C---CcCchhhhhhHHHHHHhcCC--cCC-----CCChHHHHHHHHHHHHHhhcCHHHHHHh
Q 000705 908 KLDTLSEKAEKEIISGG-S---SQKNLIGHCASFLSKFCRNF--SLM-----NKYPELQASAMLALCRFMIIDADYCDAN 976 (1342)
Q Consensus 908 ~~d~i~~i~E~eLl~g~-~---~~~sLL~~f~PlV~~iC~~~--~~~-----~~~~~l~~~A~l~L~K~m~vs~~~c~~~ 976 (1342)
++-.+-++|-+-.+++. . ++.--|++|.++=.++|... ..+ ..+|.+|.-++++||-|...=..+-+.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~ 999 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPW 999 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchh
Confidence 45567777766666542 0 00124788888889999763 211 2688999999999999988888899999
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHH----------------------
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAV---------------------- 1034 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l---------------------- 1034 (1342)
-+.|+..| ..+++.||-|++..|.=|.-.====|--+...|..||-||++.+|--|=
T Consensus 1000 T~~Ly~rL-~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~ 1078 (1251)
T KOG0414|consen 1000 TEHLYRRL-RDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILS 1078 (1251)
T ss_pred hHHHHHHh-cCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHH
Confidence 99999999 8889999999999887665533334677899999999999999987766
Q ss_pred ----------------HHHHHHHHccccccchh-HHHHHHHhcCCChhHHHHHHHHHHHHhccCC-chhhhhhhHHHhhc
Q 000705 1035 ----------------LVLSHLILNDMMKVKGY-INEMAIRVEDEDQRISNLAKLFFHELSKKGN-NPIYNLLPDILGKL 1096 (1342)
Q Consensus 1035 ----------------~vlthLIl~dmiKvKg~-l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~-n~iyn~~pdiis~L 1096 (1342)
--|-.||..| =|..|. +.++..-+..-+++=..=-+.||..+++|.+ |.+||.|.|+|+++
T Consensus 1079 ~Ls~~~l~~~~~~~vm~~li~~ikkd-erf~~~~~~rycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v~~~f~diis~~ 1157 (1251)
T KOG0414|consen 1079 RLSNGNLEEESYKTVMEFLIGLIKKD-ERFSADRIERYCLSLLTTTERGSKKLKDLFTALAKKVQNDSVYNNFIDIISKL 1157 (1251)
T ss_pred hhccCcccchhhHHHHHHHHHHhccc-ccccccccchhhhcccccchhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 2222233333 122221 1222222222222222223468999999954 88999999999999
Q ss_pred cCCC-----CChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchhhHHHHHHHHhccC
Q 000705 1097 CNQN-----LKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLA 1154 (1342)
Q Consensus 1097 s~~~-----~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~ 1154 (1342)
+... .-.+.|+.+++++..++++++++.+++|++-.|...+.+..+|.++++.++.+|
T Consensus 1158 sk~a~pe~ka~~~efe~ki~~~h~~~~~~~~~~Q~~e~~~~~~~~~~~~~r~~~it~~~~r~p 1220 (1251)
T KOG0414|consen 1158 SKFAKPELKAVIDEFEEKIKECHSFKKDERHKAQLVEELTPRLKKCSTGSRWADITKNLGRLP 1220 (1251)
T ss_pred ccccCchhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHhhccccccccccccccccCCC
Confidence 8542 345899999999999999999999999999999999999999999999999999
No 7
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.97 E-value=8.6e-06 Score=106.02 Aligned_cols=588 Identities=18% Similarity=0.186 Sum_probs=334.1
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCC
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQL 453 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L 453 (1342)
-|.+|.+++-=..--.+-+|+|||.++..+++...+=+.+ ..|-..+.+|+.|-|+.||-+|+-|+++++..+|
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~-~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~----- 887 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR-PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP----- 887 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC-HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-----
Confidence 5777887777666666789999999999999987666655 5888999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCC
Q 000705 454 RIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSV 533 (1342)
Q Consensus 454 ~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~ 533 (1342)
+...+-++...+.. +
T Consensus 888 --e~~~qyY~~i~erI----------------------l----------------------------------------- 902 (1692)
T KOG1020|consen 888 --ELIFQYYDQIIERI----------------------L----------------------------------------- 902 (1692)
T ss_pred --HHHHHHHHHHHhhc----------------------C-----------------------------------------
Confidence 22222222221100 0
Q ss_pred CCchhhHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhccc
Q 000705 534 PDVGNLEQTRAL---VASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQ 610 (1342)
Q Consensus 534 ~~~~~l~k~~~~---v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWsk 610 (1342)
|.+-..+.|++ ..-|.+.=.|....+-+. |||.=|=.-
T Consensus 903 -DtgvsVRKRvIKIlrdic~e~pdf~~i~~~ca--------------------------------------kmlrRv~DE 943 (1692)
T KOG1020|consen 903 -DTGVSVRKRVIKILRDICEETPDFSKIVDMCA--------------------------------------KMLRRVNDE 943 (1692)
T ss_pred -CCchhHHHHHHHHHHHHHHhCCChhhHHHHHH--------------------------------------HHHHHhccc
Confidence 01111222221 222222223433333222 344444444
Q ss_pred CccHHHHHHHHHHHhhcCCChH-----HH---HHHHHHHHhhcCcchhhHHHHHHHHHHhCCCC-------C--------
Q 000705 611 DKSIYEAVENAFITIYVRKSPV-----ET---AKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDV-------S-------- 667 (1342)
Q Consensus 611 d~~I~~~vi~ay~~Ly~~~~~~-----~i---a~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I-------~-------- 667 (1342)
+-+|++-|.+.|-.++|+|.+. .. .-+.+..+...=..-.+.+|+|+..+.+.+.. .
T Consensus 944 Eg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~ 1023 (1692)
T KOG1020|consen 944 EGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVT 1023 (1692)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcc
Confidence 4558888999999999998821 11 11122222211133345677777776654431 1
Q ss_pred ---HHHHHHHHHHhh-c----cCCCCCHHhHHHHHHHHHHHhccChhhhh-hhHHHHHHhhcCC-CCCCcHHHHHHHHHH
Q 000705 668 ---MSTISALWDFFC-F----NVSGTTPEKSRAALSVLCMAAKSSAAVLG-SHLQDIIDIGFGR-WAKVEPLLARTACIA 737 (1342)
Q Consensus 668 ---~~vi~~LW~~~~-~----~~~~~s~~~~r~Al~lL~Mia~~~~~Iv~-~~l~~l~~iglg~-~~~~D~~lar~~c~a 737 (1342)
..+..-|.+... . ...+.+..+--+-+..|-..|+..|.... +++-+|.-+.-.. ....+..+..|...+
T Consensus 1024 ~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~I 1103 (1692)
T KOG1020|consen 1024 HVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQI 1103 (1692)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHH
Confidence 111112221111 0 12233444555778888999999999888 8888886654433 333455555555555
Q ss_pred HHhccccccccccccCcchHHHHHHHHHc-cCCCCCCchHHHHH---HHHHHHHhcCCChHHHHHHHHHHHHHHhhcccC
Q 000705 738 IQRLSQEDKKKLLLSYGSRVFATLESLIT-GFWLPDNIWYTAAD---KAISAIYTIHPTPETLAVDLVKKSLSAVFDYVG 813 (1342)
Q Consensus 738 L~~l~~~~k~~~r~~~~~~if~~L~~~l~-~~~~~~~~W~~~ae---qaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~ 813 (1342)
|.+.-|--++ | ...+...|...|. ... ..+ +.... ..+.++|.--.+--.+ ++.|...+|....
T Consensus 1104 le~VlPlv~~----~-sesfL~sLEe~L~~~i~--k~g-~a~V~~~vsCl~sl~~k~~~~~~~----v~~cf~~~~k~le 1171 (1692)
T KOG1020|consen 1104 LECVLPLVAN----P-SESFLASLEEDLLKRIV--KMG-MATVVEAVSCLGSLATKRTDGAKV----VKACFSCYLKLLE 1171 (1692)
T ss_pred HHHHhhhhcc----c-hHHHHHHHHHHHHHHHH--hcc-hHHHHHHHHHHHHHHhhhccchHH----HHHHHHHHHHHHH
Confidence 5555443221 1 1223344444332 100 001 12233 3344444422232223 3333333332221
Q ss_pred C-CCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCc
Q 000705 814 G-EEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKD 892 (1342)
Q Consensus 814 ~-~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~ 892 (1342)
. ..+.++. . ....--.|.|.||++|--+-- ..-. ..++
T Consensus 1172 ~~k~s~~en---~----~~~~~p~l~RsiftlG~l~Ry----------------fdf~--------~~~~---------- 1210 (1692)
T KOG1020|consen 1172 VIKSSNNEN---A----DIVNFPKLQRSIFTLGLLSRY----------------FDFP--------KPSN---------- 1210 (1692)
T ss_pred HHHhccccc---c----chhhhHHHHHHHHHHHHHHHh----------------ccCC--------CccC----------
Confidence 1 0000000 0 122335899999999965321 0000 0000
Q ss_pred cchhhhhccccchhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH
Q 000705 893 TSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY 972 (1342)
Q Consensus 893 ~~~~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~ 972 (1342)
-+-++ .+..-.++|+=+. +|..| |+. .+..||..|+.+||++|...+++
T Consensus 1211 --------~g~~~---~~~~~~~~e~v~~--------lL~~f-------~k~-----~~~~lR~~al~~Lg~~ci~hp~l 1259 (1692)
T KOG1020|consen 1211 --------DGKTF---LQEGETLKEKVLI--------LLMYF-------SKD-----KDGELRRKALINLGFICIQHPSL 1259 (1692)
T ss_pred --------CCccc---hhhhhhHHHHHHH--------HHHHH-------HHh-----hhhHHHHHHHHHHHHHHhhCchh
Confidence 00011 1223355553221 44455 443 56799999999999999988755
Q ss_pred H--------------------------HHhHHHHHHHH----hcCCChhhHhhHHHHhhhh----hhccCc-----cccc
Q 000705 973 C--------------------------DANLQLLFTVV----ESSPSEIVRSNCTIALGDL----AVRFPN-----LLEP 1013 (1342)
Q Consensus 973 c--------------------------~~~l~llf~~l----e~s~~~~vR~N~vi~lgDL----~~rfpn-----lvep 1013 (1342)
- .+|+.++...= ......-..+|=.+=++-| ..-+.+ ++..
T Consensus 1260 ~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Ql 1339 (1692)
T KOG1020|consen 1260 FTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQL 1339 (1692)
T ss_pred hhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHH
Confidence 2 22233222211 1111122233322222211 122334 8999
Q ss_pred chHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh---h
Q 000705 1014 WTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL---P 1090 (1342)
Q Consensus 1014 ~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~---p 1090 (1342)
|.+.+-.+--|.|..||..|+.|+-=-+-.|+|-+.--+..+--+-.||.+.||..|-....|+.+|.+.-|.-.+ .
T Consensus 1340 fl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~ 1419 (1692)
T KOG1020|consen 1340 FLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGV 1419 (1692)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999998777788999999999999999999999743332222 2
Q ss_pred HHHhhccC--------C----CCChhHHHHHHHHHHhhhhhhhh-HHHHHHHHHhhhhcc--cchhhHHHHHHHHhccCC
Q 000705 1091 DILGKLCN--------Q----NLKTESFCNIMQLLIGFIKKDKQ-MEALVEKLCNRFSGV--TDIRQWEYISYCLSQLAF 1155 (1342)
Q Consensus 1091 diis~Ls~--------~----~~~~~~f~~I~~fLl~~i~KdKq-~e~LveKLc~Rf~~~--~~~rqwrdiafcLslL~~ 1155 (1342)
++.++|.. + ..+...=-++..++.+++.-.|| ..++..-+..-|... ....+.-+||-||+.+||
T Consensus 1420 ~lsf~lq~~~~~~~~~~~~~fr~~d~ss~tl~s~ly~~~r~nk~~rr~fl~si~~lfd~~~ks~vs~~~yiadnLA~fPy 1499 (1692)
T KOG1020|consen 1420 QLSFKLQQHIDEKTYKPVRGFRLPDHSSSTLKSNLYKSIRGNKQIRRSFLQSILDLFDDPNKSVVSFLLYIADNLANFPY 1499 (1692)
T ss_pred HHHHHHHHHHHHHhhcccccccCcccchhHHHhccHHHHhhhHHHHHHHHHHHHHhccCCCcchhhhHHHHHhhhccCCc
Confidence 23333321 1 11222333566788888875555 556666666666663 345678889999999999
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.78 E-value=6.5e-06 Score=101.82 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHH
Q 000705 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRN 343 (1342)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRn 343 (1342)
..+..++......|+...+..++++-++. +|-..-|=.-.|+..++...|.+++=-++.|.+-|.+++..+|+
T Consensus 25 ~~l~kli~~~~~G~~~~~~~~~vi~l~~s-------~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~ 97 (526)
T PF01602_consen 25 EALKKLIYLMMLGYDISFLFMEVIKLISS-------KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRG 97 (526)
T ss_dssp HHHHHHHHHHHTT---GSTHHHHHCTCSS-------SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHH
Confidence 45666666667777777777777765542 34555566778899999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHH
Q 000705 344 ALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVA 421 (1342)
Q Consensus 344 avvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~a 421 (1342)
..+.+++++... +. .+.++..+..-+.|-++|||.+|+-++.+++.. ..+|.. +....
T Consensus 98 lAL~~l~~i~~~------------~~----~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l 157 (526)
T PF01602_consen 98 LALRTLSNIRTP------------EM----AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE----LIPKL 157 (526)
T ss_dssp HHHHHHHHH-SH------------HH----HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HHHHH
T ss_pred HHHhhhhhhccc------------ch----hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH----HHHHH
Confidence 999999998511 22 567888888888899999999999999999985 334322 56777
Q ss_pred HhhccCCchhHHHHHHHHHHHH
Q 000705 422 AGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 422 v~RL~DKSs~VRK~AiqLL~~l 443 (1342)
...|.|+...|+.+|+.++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 7788999999999999999887
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=98.63 E-value=0.00074 Score=87.01 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=118.3
Q ss_pred HHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHH
Q 000705 271 AGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLG 350 (1342)
Q Consensus 271 ~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig 350 (1342)
..+...+|...+..+|++-++. .|-.--|=+-.|+..+++..|.+++=.++.|.+-+.+++-.+|..-+-+|+
T Consensus 58 a~mt~G~DvS~LF~dVvk~~~S-------~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs 130 (746)
T PTZ00429 58 ANMTMGRDVSYLFVDVVKLAPS-------TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMM 130 (746)
T ss_pred HHHHCCCCchHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444456777788888885532 355566778899999999999999988999999999999999999999999
Q ss_pred HHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhhccCC
Q 000705 351 KLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVAAGRLEDK 428 (1342)
Q Consensus 351 ~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~av~RL~DK 428 (1342)
.|-.. +. .+.++..|..-+.|.+||||.+|.-++.+|... ..++...| ......-|.|+
T Consensus 131 ~Ir~~------------~i----~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~---~~~L~~LL~D~ 191 (746)
T PTZ00429 131 CIRVS------------SV----LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF---KKDLVELLNDN 191 (746)
T ss_pred cCCcH------------HH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch---HHHHHHHhcCC
Confidence 97422 12 456677777778899999999999999999874 33443222 22333348999
Q ss_pred chhHHHHHHHHHHHHHhhCC
Q 000705 429 SAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 429 Ss~VRK~AiqLL~~lL~~nP 448 (1342)
++.|.-||+.+|..+-..+|
T Consensus 192 dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 192 NPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred CccHHHHHHHHHHHHHHhCc
Confidence 99999999999999988776
No 10
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.50 E-value=6.6e-06 Score=95.41 Aligned_cols=219 Identities=16% Similarity=0.210 Sum_probs=175.0
Q ss_pred hhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC-cc
Q 000705 932 GHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP-NL 1010 (1342)
Q Consensus 932 ~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfp-nl 1010 (1342)
+.+.-+|.-..++ .++.+|..|+.|||-+|+++.++|.+++++|++.+++ .++.||.-++=++.|+..-|+ ..
T Consensus 26 ~ll~~lI~P~v~~-----~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-----SDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchh
Confidence 4445555544455 6789999999999999999999999999999999955 488999999999999999997 66
Q ss_pred cccchH------------HHhhhcCCCCHHHHHHHHHHHHHHHHcccccc-chhHHHHHHHhcCCC----hhHHHHHHHH
Q 000705 1011 LEPWTE------------NMYARLKDPSMAVRKNAVLVLSHLILNDMMKV-KGYINEMAIRVEDED----QRISNLAKLF 1073 (1342)
Q Consensus 1011 vep~t~------------~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv-Kg~l~~~a~~l~D~d----~~I~~~a~~f 1073 (1342)
++.+.. -++..|.+.++.||..+..-+..|+++|.+.. ...+..+.....||. +++++.=-.|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 666665 78899999999999999999999999999999 777788888877765 7899999999
Q ss_pred HHHHhccCC---chhhhhhhHHHhhccCC--C----CChhHHHHHHHHHHhhhhhhhh-------------HHHHHHHHH
Q 000705 1074 FHELSKKGN---NPIYNLLPDILGKLCNQ--N----LKTESFCNIMQLLIGFIKKDKQ-------------MEALVEKLC 1131 (1342)
Q Consensus 1074 f~eL~~K~~---n~iyn~~pdiis~Ls~~--~----~~~~~f~~I~~fLl~~i~KdKq-------------~e~LveKLc 1131 (1342)
|..++.-++ ..+-..|.+.+..+.+. + ...-+-.++++|++.+.+..+. ...|+.++|
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il 259 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDIL 259 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHH
Confidence 998776543 55888888888888643 1 1122356899999998873222 248899999
Q ss_pred hhhhcccchh--hHHHHHHHHhccCCC
Q 000705 1132 NRFSGVTDIR--QWEYISYCLSQLAFT 1156 (1342)
Q Consensus 1132 ~Rf~~~~~~r--qwrdiafcLslL~~~ 1156 (1342)
.++....+.. .-+-+.=.|+.|.++
T Consensus 260 ~~i~~~~~~~~~~~k~~~~~L~~L~i~ 286 (298)
T PF12719_consen 260 NEILSDPEKEKEERKALCKALSKLEIS 286 (298)
T ss_pred HHHHhccccchHHHHHHHHHHhccccC
Confidence 9997553333 666666677777765
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=98.18 E-value=0.0002 Score=92.09 Aligned_cols=215 Identities=15% Similarity=0.193 Sum_probs=157.0
Q ss_pred hhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcC
Q 000705 908 KLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESS 987 (1342)
Q Consensus 908 ~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s 987 (1342)
-.+++..+.=...+ | .. .+.+.|-|++.+.. +|..++.-..+.|..+-...++.+-=-++.|.+-| ++
T Consensus 49 kk~alKkvIa~mt~-G----~D-vS~LF~dVvk~~~S-----~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl-~d 116 (746)
T PTZ00429 49 KKAAVKRIIANMTM-G----RD-VSYLFVDVVKLAPS-----TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDT-TN 116 (746)
T ss_pred HHHHHHHHHHHHHC-C----CC-chHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHc-CC
Confidence 35677777765554 4 22 24455666665555 57899999999999998888887777777777777 67
Q ss_pred CChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc--cccccchhHHHHHHHhcCCChh
Q 000705 988 PSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN--DMMKVKGYINEMAIRVEDEDQR 1065 (1342)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~--dmiKvKg~l~~~a~~l~D~d~~ 1065 (1342)
++|.||++++=.||. +|-|+++|+-.+.+-++|.|++|.|||+|.+-+.+|... +++...|-+-++..+|.|+|+.
T Consensus 117 ~Np~IRaLALRtLs~--Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 117 SSPVVRALAVRTMMC--IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPV 194 (746)
T ss_pred CCHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCcc
Confidence 899999999999997 566999999999999999999999999999999999754 4555566666777789999999
Q ss_pred HHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhhhcc
Q 000705 1066 ISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKK-DKQMEALVEKLCNRFSGV 1137 (1342)
Q Consensus 1066 I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~I~~fLl~~i~K-dKq~e~LveKLc~Rf~~~ 1137 (1342)
+..-|-..|.|+...+|+. +......+.+|.+. ..++=.=-.|++.|..|.-. +...+.+++.+..|+...
T Consensus 195 Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~ 268 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQ 268 (746)
T ss_pred HHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999998887654 45555555555321 22222223456666555422 233556666666666554
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.05 E-value=0.00042 Score=85.91 Aligned_cols=248 Identities=21% Similarity=0.238 Sum_probs=171.4
Q ss_pred hhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCC
Q 000705 909 LDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSP 988 (1342)
Q Consensus 909 ~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~ 988 (1342)
.+++..+.=-.++ | . =++.+.|-|++.|.+ ++..+++-+.+.++-+..-+++.+-=....|.+-| .++
T Consensus 24 ~~~l~kli~~~~~-G----~-~~~~~~~~vi~l~~s-----~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl-~~~ 91 (526)
T PF01602_consen 24 KEALKKLIYLMML-G----Y-DISFLFMEVIKLISS-----KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL-NSP 91 (526)
T ss_dssp HHHHHHHHHHHHT-T--------GSTHHHHHCTCSS-----SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH-CSS
T ss_pred HHHHHHHHHHHHc-C----C-CCchHHHHHHHHhCC-----CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh-cCC
Confidence 4566666654444 3 1 223445556666654 67899999999999999999997777777777777 689
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch-hHHHHHHHhcCCChhHH
Q 000705 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG-YINEMAIRVEDEDQRIS 1067 (1342)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg-~l~~~a~~l~D~d~~I~ 1067 (1342)
+|.+|+.++=++|.++ -|.++++-.+.+...|.|++|.|||+|++.+.++...+==-+.. -+-.+..+|.|+|+.+.
T Consensus 92 n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~ 169 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVV 169 (526)
T ss_dssp SHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHH
T ss_pred CHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhH
Confidence 9999999999999976 79999999999999999999999999999999999864333333 35778889999999999
Q ss_pred HHHHHHHHHHhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhhhhh-H--HHHHHHHHhhhhcccchhh
Q 000705 1068 NLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKKDKQ-M--EALVEKLCNRFSGVTDIRQ 1142 (1342)
Q Consensus 1068 ~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~I~~fLl~~i~KdKq-~--e~LveKLc~Rf~~~~~~rq 1142 (1342)
.-|=.++.++ ++.+...-..+|..+..|..- ..++--...+++.|-.+...+.. . ..+++.+...+.... ..-
T Consensus 170 ~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~-~~V 247 (526)
T PF01602_consen 170 SAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSS-PSV 247 (526)
T ss_dssp HHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccc-cHH
Confidence 9999999999 333222226677777776532 33444456788888888763333 2 457777777666332 222
Q ss_pred HHHHHHHHhccCCChhHHHHHHHhHHHHHHhhC
Q 000705 1143 WEYISYCLSQLAFTEKGMKKLIESFKTYEHALS 1175 (1342)
Q Consensus 1143 wrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~ 1175 (1342)
--..+-|+..++.+...+++.+. .+...|.
T Consensus 248 ~~e~~~~i~~l~~~~~~~~~~~~---~L~~lL~ 277 (526)
T PF01602_consen 248 VYEAIRLIIKLSPSPELLQKAIN---PLIKLLS 277 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHhhcchHHHHhhHH---HHHHHhh
Confidence 22333444455555554444433 3444444
No 13
>PRK09687 putative lyase; Provisional
Probab=97.93 E-value=0.00095 Score=77.08 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=113.1
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW 1014 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~ 1014 (1342)
.|.+...|.+ .++.+|.+|+-+||.+=.-. .--.+.+|+|..++.+.+++.||..++-+||+++...++....-
T Consensus 56 ~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~-~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a 129 (280)
T PRK09687 56 FRLAIELCSS-----KNPIERDIGADILSQLGMAK-RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKI 129 (280)
T ss_pred HHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCc-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHH
Confidence 3455667777 67899999999999973211 11246789999998899999999999999999988776554444
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHh
Q 000705 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILG 1094 (1342)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis 1094 (1342)
.+.+-..+.|+++.||+.++.-|. -++-..-+.-+..+|.|+|+.|+.-|-.-+..+...+| ...|-.+.
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg------~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~ 199 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALS------VINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP----DIREAFVA 199 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHH
Confidence 566778899999999999999983 44444455678889999999999999988877732232 34566677
Q ss_pred hccCC
Q 000705 1095 KLCNQ 1099 (1342)
Q Consensus 1095 ~Ls~~ 1099 (1342)
.|.|+
T Consensus 200 ~L~D~ 204 (280)
T PRK09687 200 MLQDK 204 (280)
T ss_pred HhcCC
Confidence 77654
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.78 E-value=0.53 Score=66.55 Aligned_cols=411 Identities=13% Similarity=0.116 Sum_probs=252.7
Q ss_pred HhHHHHHHHHhcCCC----chhHHHHHHHHHHHhhccCcch-----HHHHhhhcchhcccCcc-HHHHHHHHHHHhhcCC
Q 000705 560 SSTMPTLVQLMASSS----ASDVENTILLLMRCKQFQIDGA-----EACLHKMLPLVLSQDKS-IYEAVENAFITIYVRK 629 (1342)
Q Consensus 560 ~~al~~i~~LL~Sk~----~sDV~EaI~Ff~~a~~f~I~~a-----~~girkML~LVWskd~~-I~~~vi~ay~~Ly~~~ 629 (1342)
...++.+.+++.|.. ..|..-|+.++..-..-+-+.. ...++.+..|..++++. +++.+.+|-..+|-++
T Consensus 315 ~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~ 394 (2102)
T PLN03200 315 SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394 (2102)
T ss_pred hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh
Confidence 456777888886641 1244455555533222211111 12335566777778766 5888999887777665
Q ss_pred C------hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC------CCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHH
Q 000705 630 S------PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG------DVSMSTISALWDFFCFNVSGTTPEKSRAALSVL 697 (1342)
Q Consensus 630 ~------~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~------~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL 697 (1342)
. .....+-|+.|+.-.+..-.+..=.-+..+...+ .++...+..|++... ..+...++.|+..|
T Consensus 395 ~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L 470 (2102)
T PLN03200 395 YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALL 470 (2102)
T ss_pred HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 4 2234455777777555443333222222233221 233345667777654 23567788999999
Q ss_pred HHHhccChh----hhh-hhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHccCCCCC
Q 000705 698 CMAAKSSAA----VLG-SHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPD 772 (1342)
Q Consensus 698 ~Mia~~~~~----Iv~-~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~ 772 (1342)
+.++..+++ |+. ..+..|+++- . ..|..+-..+|.+|..+.....+.-.+=.++.++..|..++.. .+
T Consensus 471 ~nLa~~ndenr~aIieaGaIP~LV~LL-~---s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s---gd 543 (2102)
T PLN03200 471 AILTDEVDESKWAITAAGGIPPLVQLL-E---TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN---GG 543 (2102)
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHH-c---CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC---CC
Confidence 999986653 222 3466676643 2 3477889999999999986322111111123345556666642 11
Q ss_pred CchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHH
Q 000705 773 NIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQL 852 (1342)
Q Consensus 773 ~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~l 852 (1342)
..+-+.|..+|++|..+.|. +.|+.+...+ ... ......+.+=++|++.- +
T Consensus 544 ---~~~q~~Aa~AL~nLi~~~d~---~~I~~Lv~LL-lsd--------------------d~~~~~~aL~vLgnIls--l 594 (2102)
T PLN03200 544 ---PKGQEIAAKTLTKLVRTADA---ATISQLTALL-LGD--------------------LPESKVHVLDVLGHVLS--V 594 (2102)
T ss_pred ---HHHHHHHHHHHHHHHhccch---hHHHHHHHHh-cCC--------------------ChhHHHHHHHHHHHHHh--h
Confidence 25568899999999754432 2234444333 111 01233334445565511 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHhhhccCCCCcCchhh
Q 000705 853 VYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIG 932 (1342)
Q Consensus 853 V~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~ 932 (1342)
.. .+ |......+. .|
T Consensus 595 -----~~--------------------------------------------~~----d~~~~g~~~---~g--------- 609 (2102)
T PLN03200 595 -----AS--------------------------------------------LE----DLVREGSAA---ND--------- 609 (2102)
T ss_pred -----cc--------------------------------------------hh----HHHHHhhhc---cc---------
Confidence 00 00 001111100 12
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhh--h
Q 000705 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLA--V 1005 (1342)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~llf~~le~s~~~~vR~N~vi~lgDL~--~ 1005 (1342)
-.|.++++-.+ +++..+..|.-+|+.++.-+.++|.. -+|-++..|. +.+..+|-.+..+|+=++ .
T Consensus 610 -gL~~Lv~LL~s-----gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 610 -ALRTLIQLLSS-----SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred -cHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCC
Confidence 15666666666 56899999999999999999998875 4588888884 556668888999998888 3
Q ss_pred ccCc---cccc-chHHHhhhcCCCCHHHHHHHHHHHHHHHHcccccc----chhHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000705 1006 RFPN---LLEP-WTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV----KGYINEMAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1006 rfpn---lvep-~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv----Kg~l~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
++.| +++. -.+-|-..|.+++..|+..|+..|.+|...+=.+. -|-|.-+...|-..+++.+.-|-.=+.+|
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4444 2332 46778889999999999999999999999885553 45577899999999999999998888888
Q ss_pred hccCC
Q 000705 1078 SKKGN 1082 (1342)
Q Consensus 1078 ~~K~~ 1082 (1342)
.+.+|
T Consensus 763 ~~~~~ 767 (2102)
T PLN03200 763 LKHFP 767 (2102)
T ss_pred HhCCC
Confidence 88763
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.70 E-value=0.0006 Score=73.45 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccch-HHHhhhcCCCCHHH
Q 000705 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWT-ENMYARLKDPSMAV 1029 (1342)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t-~~ly~~L~D~~~~V 1029 (1342)
||.+|..|+++||-++..-+.+.+.++|.++..| ++++|.||.++++++..|.-.-.--+.+.. ..+..+|.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 6899999999999999999999999999999999 788999999999999999987555555555 78888999999999
Q ss_pred HHHHHHHHHHHHHc
Q 000705 1030 RKNAVLVLSHLILN 1043 (1342)
Q Consensus 1030 R~~~l~vlthLIl~ 1043 (1342)
|..|...++.+...
T Consensus 80 r~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 80 RSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999887
No 16
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.043 Score=69.14 Aligned_cols=428 Identities=18% Similarity=0.210 Sum_probs=248.7
Q ss_pred HHHHHHh-hcccch-HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHh
Q 000705 251 SIMHLIH-KYDFVV-VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIG 328 (1342)
Q Consensus 251 ~IiqlL~-~~ehl~-~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is 328 (1342)
-+.++|. .++.+- +.|=..+.++++..|...++.++++-++.. ++..-|=+-.+|++.||..|.+-+=.|+
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVask-------n~EVKkLVyvYLlrYAEeqpdLALLSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASK-------NIEVKKLVYVYLLRYAEEQPDLALLSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHhhcCCCceeeeHH
Confidence 3556665 344443 667777777777777777888888888654 4456688999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC
Q 000705 329 VLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS 408 (1342)
Q Consensus 329 ~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~ 408 (1342)
.+.+-|..++.-+|+.-+-+|..|=+... -=-+|-.+.+=+.|-++|||.-|-..+.+|-..+
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRvp~I----------------aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd- 174 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRVPMI----------------APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD- 174 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcchhhH----------------HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-
Confidence 99999999999999999999988732211 1235566778889999999999999999988865
Q ss_pred cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCC
Q 000705 409 VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSD 488 (1342)
Q Consensus 409 iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~ 488 (1342)
| ....++.++.--=|.|+++.|--+|+--.... .|- ..+.+-+.+.+...-|..+
T Consensus 175 -~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~ev---CPe----rldLIHknyrklC~ll~dv---------------- 229 (968)
T KOG1060|consen 175 -P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEV---CPE----RLDLIHKNYRKLCRLLPDV---------------- 229 (968)
T ss_pred -h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHh---chh----HHHHhhHHHHHHHhhccch----------------
Confidence 2 34458888888889999999999887654432 221 1122222222332212110
Q ss_pred CCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H
Q 000705 489 RGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTL-V 567 (1342)
Q Consensus 489 ~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i-~ 567 (1342)
+ +-+++.-..+++.|-+ ..|.+ |.. .
T Consensus 230 -------------d--------------------------------eWgQvvlI~mL~RYAR--~~l~~------P~~~~ 256 (968)
T KOG1060|consen 230 -------------D--------------------------------EWGQVVLINMLTRYAR--HQLPD------PTVVD 256 (968)
T ss_pred -------------h--------------------------------hhhHHHHHHHHHHHHH--hcCCC------ccccc
Confidence 0 0122333444555521 11111 000 0
Q ss_pred HHhcCCCchhHHHHHHHHHHHhhccCcc-------hHHHHhhhcchhcccCccHHHHHHHHHHHhhcCCC--hHHHHHHH
Q 000705 568 QLMASSSASDVENTILLLMRCKQFQIDG-------AEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKS--PVETAKNL 638 (1342)
Q Consensus 568 ~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~-------a~~girkML~LVWskd~~I~~~vi~ay~~Ly~~~~--~~~ia~nL 638 (1342)
..+. .+..++-+ ...+. +|++ -..-++..=+|+||.+++|.=++..+|+.| .|+ ...||+-|
T Consensus 257 ~~~e-~n~~~~~~-----~~~~~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~l--AP~~~~~~i~kaL 327 (968)
T KOG1060|consen 257 SSLE-DNGRSCNL-----KDKYN-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHL--APKNQVTKIAKAL 327 (968)
T ss_pred cccc-cCcccccc-----ccccc-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhh--CCHHHHHHHHHHH
Confidence 0000 00000000 00000 1111 134566677899999999999999999976 233 78899999
Q ss_pred HHHHhhcCcchhhHHHHHHHHHHhCC-CC------------CHHHHHHHHHHh--h--ccCCCC-------------CH-
Q 000705 639 LNLAIDSNIGDQAAMEFIVGTLVSKG-DV------------SMSTISALWDFF--C--FNVSGT-------------TP- 687 (1342)
Q Consensus 639 i~L~~~at~~dl~sLEeLl~~~~~~~-~I------------~~~vi~~LW~~~--~--~~~~~~-------------s~- 687 (1342)
+.|+..-..-...-|.-+-..-++.. .+ ++..+ ++|.+= + .+..++ +.
T Consensus 328 vrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v-k~lKleiLs~La~esni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 328 VRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV-KILKLEILSNLANESNISEILRELQTYIKSSDR 406 (968)
T ss_pred HHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH-HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch
Confidence 99999887777776666654443332 11 12222 222221 1 000000 01
Q ss_pred HhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccccccCcc-hHHHHHHHHHc
Q 000705 688 EKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGS-RVFATLESLIT 766 (1342)
Q Consensus 688 ~~~r~Al~lL~Mia~~~~~Iv~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~-~if~~L~~~l~ 766 (1342)
.=...|+.-+|-.|+..-++...=++-|+.. +. ..|-.....+-..|++|...+ |..| +++.+|..++-
T Consensus 407 ~faa~aV~AiGrCA~~~~sv~~tCL~gLv~L-ls---shde~Vv~eaV~vIk~Llq~~------p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGSVTDTCLNGLVQL-LS---SHDELVVAEAVVVIKRLLQKD------PAEHLEILFQLARLLD 476 (968)
T ss_pred hHHHHHHHHHHHHHHhhCchhhHHHHHHHHH-Hh---cccchhHHHHHHHHHHHHhhC------hHHHHHHHHHHHHHhh
Confidence 1112344455555555544444444444442 11 125555555666667665432 4455 57777777763
Q ss_pred cCCCCCCchHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHh
Q 000705 767 GFWLPDNIWYTAADKAISAIYTIHPT---PETLAVDLVKKSLSAV 808 (1342)
Q Consensus 767 ~~~~~~~~W~~~aeqaInaIy~l~~~---Pd~l~~~iIk~~~~~~ 808 (1342)
.. -.++|.++| |+-++++ -=.+|.++++.++..|
T Consensus 477 ti------~vp~ARA~I--iWLige~~e~vpri~PDVLR~laksF 513 (968)
T KOG1060|consen 477 TI------LVPAARAGI--IWLIGEYCEIVPRIAPDVLRKLAKSF 513 (968)
T ss_pred hh------hhhhhhcee--eeeehhhhhhcchhchHHHHHHHHhh
Confidence 21 123444443 2222222 2237888999988776
No 17
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=97.55 E-value=0.00077 Score=73.31 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=120.6
Q ss_pred cccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhh
Q 000705 1009 NLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNL 1088 (1342)
Q Consensus 1009 nlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~ 1088 (1342)
.++..|.+++..+.-+++..||..|+-++...+..|++-|+--+..+.-+..||++.|++.|.....+|..|.+..+.+.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46778999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hhHHHhhc-------cCC--CCChhHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhhhccc----------chhhHHHHHH
Q 000705 1089 LPDILGKL-------CNQ--NLKTESFCNIMQLLIGFIK-KDKQMEALVEKLCNRFSGVT----------DIRQWEYISY 1148 (1342)
Q Consensus 1089 ~pdiis~L-------s~~--~~~~~~f~~I~~fLl~~i~-KdKq~e~LveKLc~Rf~~~~----------~~rqwrdiaf 1148 (1342)
+.+.|..- ... ..........+..|.+.+. +-++...++-.||..|.... +-..++.++.
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~ 163 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAE 163 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 99976542 111 1111114455566666665 44668899999999998863 2456888888
Q ss_pred HHhccCC
Q 000705 1149 CLSQLAF 1155 (1342)
Q Consensus 1149 cLslL~~ 1155 (1342)
+|+.|||
T Consensus 164 nLA~l~y 170 (187)
T PF12830_consen 164 NLATLPY 170 (187)
T ss_pred HHhcCCC
Confidence 8999999
No 18
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.93 E-value=0.54 Score=58.93 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=98.5
Q ss_pred HhcCCcCCCCChHHHHHHHHHHHHHhh----cCHHHHHHh-HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-
Q 000705 941 FCRNFSLMNKYPELQASAMLALCRFMI----IDADYCDAN-LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW- 1014 (1342)
Q Consensus 941 iC~~~~~~~~~~~l~~~A~l~L~K~m~----vs~~~c~~~-l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~- 1014 (1342)
-|.+|. +|...++||.+||--+-- ++.++-..+ +..|+.+| .-|+.-|..-++=++|-|..-|.|+=+.+
T Consensus 383 ~~~~~~---kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 383 MCLPPI---KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred cccccc---ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 455554 578999999988755421 122222222 34445555 66777788888888888888888876655
Q ss_pred ----hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHH-H-----HHHHhcCCChhHHHHHHHHHHHH
Q 000705 1015 ----TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYIN-E-----MAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1015 ----t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~-~-----~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
++.+-..+.|+++.+|++++-||-||+-|+-.+.|-+.. + ++....|||..|..-|=.....|
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 577888999999999999999999999999999988873 2 66788999999998766555543
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.86 E-value=1.1 Score=56.11 Aligned_cols=351 Identities=16% Similarity=0.158 Sum_probs=204.4
Q ss_pred cchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHh-ccChhhhhhhHHHHHHhhcCCCCC
Q 000705 647 IGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAA-KSSAAVLGSHLQDIIDIGFGRWAK 725 (1342)
Q Consensus 647 ~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia-~~~~~Iv~~~l~~l~~iglg~~~~ 725 (1342)
...+.+|.++-........++.-...++++.+. ....++--.+..+|.++- ...|..+..+....+..||..
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~----~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h--- 88 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLPEPVLFDCLN----TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH--- 88 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHh----hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC---
Confidence 456667777766665555344333334666554 124455556666777654 455666666777777778874
Q ss_pred CcHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHH-----
Q 000705 726 VEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDL----- 800 (1342)
Q Consensus 726 ~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~i----- 800 (1342)
.++.+-+.+|.+|.++..........-.++.++..+...+.. ++ ..+++.|++++-.|+.+|..+ ..+
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~d---~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~ 161 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---PD---LSVAKAAIKALKKLASHPEGL-EQLFDSNL 161 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---Cc---HHHHHHHHHHHHHHhCCchhH-HHHhCcch
Confidence 577777778999999865443335556678888888888742 33 379999999999999988754 233
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhc
Q 000705 801 VKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCE--IRKQKIKKEKMIADDQN 878 (1342)
Q Consensus 801 Ik~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~--lKrrk~~~ek~~~~~~~ 878 (1342)
+..+..-+ .. .+...-.|.+-++..+|-..--+.+.+... +..--. +-+
T Consensus 162 ~~~L~~l~-~~--------------------~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~-eL~------- 212 (503)
T PF10508_consen 162 LSKLKSLM-SQ--------------------SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK-ELD------- 212 (503)
T ss_pred HHHHHHHH-hc--------------------cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH-Hhc-------
Confidence 33333222 11 011233455555555554433333333221 111100 000
Q ss_pred cccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHh----hhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHH
Q 000705 879 IHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEK----EIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPEL 954 (1342)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~----eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l 954 (1342)
+ +++ ++. =...|.+..+++. +.+.. .+++..+..++...=.+| +. ...+
T Consensus 213 -----------~--dDi-----Lvq--lnalell~~La~~~~g~~yL~~----~gi~~~L~~~l~~~~~dp-~~--~~~~ 265 (503)
T PF10508_consen 213 -----------S--DDI-----LVQ--LNALELLSELAETPHGLQYLEQ----QGIFDKLSNLLQDSEEDP-RL--SSLL 265 (503)
T ss_pred -----------C--ccH-----HHH--HHHHHHHHHHHcChhHHHHHHh----CCHHHHHHHHHhccccCC-cc--cchh
Confidence 0 000 000 0012333333332 12222 456666666665554445 11 1233
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHHHH---hcCCChhhHhhHHHHhhhhh----------hccCcccccchHHHhhh
Q 000705 955 QASAMLALCRFMIIDADYCDANLQLLFTVV---ESSPSEIVRSNCTIALGDLA----------VRFPNLLEPWTENMYAR 1021 (1342)
Q Consensus 955 ~~~A~l~L~K~m~vs~~~c~~~l~llf~~l---e~s~~~~vR~N~vi~lgDL~----------~rfpnlvep~t~~ly~~ 1021 (1342)
--..+..+|.+..+++.-+..-.|.|+..| ..+.++..+..++=++|-++ ..++.-++.+...++..
T Consensus 266 l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 266 LPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334556777777767666666666665444 36789999999999999876 45556666667777777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000705 1022 LKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1022 L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1342)
.+.....+|-.+|--|+.++-.+--+ ++.+|-.+++..|.-++.+.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~--------------~~~~i~~~~~~w~~~~~~~~ 391 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDR--------------QDNDILSITESWYESLSGSP 391 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCC--------------chHHHHHHHHHHHHHhcCCc
Confidence 77777788888888888777433222 45666689999998887775
No 20
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.83 E-value=3 Score=54.38 Aligned_cols=614 Identities=18% Similarity=0.183 Sum_probs=314.9
Q ss_pred ccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHH------HhcCcccc-----cchhhhhhh
Q 000705 304 GAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAK------AFKDIEGE-----ASSKSVRLR 372 (1342)
Q Consensus 304 g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~------~l~~~~~~-----~~~k~~~~~ 372 (1342)
++|.+...++.-.|..|.+.-.-=..++.-|..--=+++--|.++.-.++.+ .+.+++.- ...+....+
T Consensus 352 AaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~ 431 (1233)
T KOG1824|consen 352 AAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSD 431 (1233)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHh
Confidence 6788888888888999988777666777777765556666677766666543 22221111 111111222
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhhccCCch--hHHHHHHHHHHHHHhhCC
Q 000705 373 TKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVAAGRLEDKSA--IVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 373 ~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~av~RL~DKSs--~VRK~AiqLL~~lL~~nP 448 (1342)
+--.+..-|..++.+.+.=+|-..+-++..|+.- ++.- .+...++.-++.||.|||+ +-++-|+-+|...|..||
T Consensus 432 ~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~-~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~ 510 (1233)
T KOG1824|consen 432 QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA-QHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP 510 (1233)
T ss_pred hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-hcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC
Confidence 3444666777778888888999999998888872 3332 3445788889999999985 678889999999998876
Q ss_pred CCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCccccccc
Q 000705 449 FGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIAD 528 (1342)
Q Consensus 449 fg~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~ 528 (1342)
=--.-+ -+..|.++.. .++.+ .|+...
T Consensus 511 p~~fhp-------------~~~~Ls~~v~----------------------------------~aV~d-~fyKis----- 537 (1233)
T KOG1824|consen 511 PEVFHP-------------HLSALSPPVV----------------------------------AAVGD-PFYKIS----- 537 (1233)
T ss_pred hhhccc-------------chhhhhhHHH----------------------------------HHhcC-chHhhh-----
Confidence 210000 0001111000 00000 011100
Q ss_pred CCCCCCCchhhHHHHHHHHHHHH--H---HHHHHHHHhHHHHHHHHhcCC-CchhHHH-HHHHHHH-HhhccCcchHHHH
Q 000705 529 KDSSVPDVGNLEQTRALVASLEA--G---LRFSKCVSSTMPTLVQLMASS-SASDVEN-TILLLMR-CKQFQIDGAEACL 600 (1342)
Q Consensus 529 ~~~~~~~~~~l~k~~~~v~yl~d--a---l~Fi~~i~~al~~i~~LL~Sk-~~sDV~E-aI~Ff~~-a~~f~I~~a~~gi 600 (1342)
.|.+.-..-.++|..- + ..+..-++.-+....+.|.++ +--+|.| ||..... .-.|| +.-..-.
T Consensus 538 -------aEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~~eL 609 (1233)
T KOG1824|consen 538 -------AEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLGNEL 609 (1233)
T ss_pred -------HHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhhhhh
Confidence 1111111111222211 1 223333333444445555444 3345655 3443321 11233 3333345
Q ss_pred hhhcchhccc--CccHHHHHHHHHHHhhcCCC-----------hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCC
Q 000705 601 HKMLPLVLSQ--DKSIYEAVENAFITIYVRKS-----------PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVS 667 (1342)
Q Consensus 601 rkML~LVWsk--d~~I~~~vi~ay~~Ly~~~~-----------~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~ 667 (1342)
++.|+..-.+ +.--|-..+.|+-.++..+. -..++..|-+-....-.+-++.+++|+... .+-|+
T Consensus 610 ~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~--~~~~~ 687 (1233)
T KOG1824|consen 610 PRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY--SDSIP 687 (1233)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccc
Confidence 6666555433 23345566777777776665 134455555555556677888888888877 56788
Q ss_pred HHHHHHHHHHhhccCCCCCHHhHH---HHHHHHHHHhccChhhhhhh----HHHHHHhhcCCCCCCcHHHHHHHHHHHH-
Q 000705 668 MSTISALWDFFCFNVSGTTPEKSR---AALSVLCMAAKSSAAVLGSH----LQDIIDIGFGRWAKVEPLLARTACIAIQ- 739 (1342)
Q Consensus 668 ~~vi~~LW~~~~~~~~~~s~~~~r---~Al~lL~Mia~~~~~Iv~~~----l~~l~~iglg~~~~~D~~lar~~c~aL~- 739 (1342)
+..++.+..... + =++..+.| .|+-+|+-++...|.++... ++.++..--++.-... +-.+|.-+.
T Consensus 688 ~~~~e~vL~el~-~--Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~---al~~~l~~f~ 761 (1233)
T KOG1824|consen 688 AELLEAVLVELP-P--LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG---ALSALLLFFQ 761 (1233)
T ss_pred HHHHHHHHHHhh-h--hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch---HHHHHHHHHH
Confidence 888777666543 1 12333333 67889999999888877543 4555554333322111 222232221
Q ss_pred hccccccccccccCcchHHHHHHHHHccCCC-------CCCchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH------
Q 000705 740 RLSQEDKKKLLLSYGSRVFATLESLITGFWL-------PDNIWYTAADKAISAIYTIHPT-PETLAVDLVKKSL------ 805 (1342)
Q Consensus 740 ~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~-------~~~~W~~~aeqaInaIy~l~~~-Pd~l~~~iIk~~~------ 805 (1342)
-+...+ +.+-+ |..|.+.+..+.. +...+|+.|.-|--.+ ..+++ --.+++.+++.+-
T Consensus 762 alV~t~------~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt-~~~~~~s~s~a~kl~~~~~s~~s~~ 833 (1233)
T KOG1824|consen 762 ALVITK------EPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT-CACPQKSKSLATKLIQDLQSPKSSD 833 (1233)
T ss_pred HHHhcC------CCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHhCCCCch
Confidence 121111 12222 5566666653211 2245666666544333 23331 1123444443332
Q ss_pred ------HHhhcccCC--CC-CCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHh
Q 000705 806 ------SAVFDYVGG--EE-PHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAM-NQLVYI----ESCVCEIRKQKIKKEK 871 (1342)
Q Consensus 806 ------~~~f~~~~~--~~-~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAl-k~lV~l----E~~~~~lKrrk~~~ek 871 (1342)
.-.||..+. +. +.++-++.-....+.-+...-+-.-+.+|.+|. +.=.|| |..+.+=||+..
T Consensus 834 ~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL---- 909 (1233)
T KOG1824|consen 834 SIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL---- 909 (1233)
T ss_pred hHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH----
Confidence 001111100 00 000000000000000011122222333333333 111111 111111111110
Q ss_pred hhhhhhccccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHH-------hcC
Q 000705 872 MIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKF-------CRN 944 (1342)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~i-------C~~ 944 (1342)
.++..+ |++...+ - ..|.|-|.+| |.+
T Consensus 910 ---------------------------------------LLhSlk--evi~~~s--v---d~~~~~v~~IW~lL~k~cE~ 943 (1233)
T KOG1824|consen 910 ---------------------------------------LLHSLK--EVIVSAS--V---DGLKPYVEKIWALLFKHCEC 943 (1233)
T ss_pred ---------------------------------------HHHHHH--HHHHHhc--c---chhhhhHHHHHHHHHHhccc
Confidence 112222 2221100 0 1222333333 444
Q ss_pred CcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchH----HHhh
Q 000705 945 FSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTE----NMYA 1020 (1342)
Q Consensus 945 ~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~----~ly~ 1020 (1342)
.. +.-|..-.-||||++|++++.= +|-|=-.+ +|+.+..|+-+|-+.-=...-.|.-|||+.. ..|.
T Consensus 944 ~e-----egtR~vvAECLGkL~l~epesL---lpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~ 1014 (1233)
T KOG1824|consen 944 AE-----EGTRNVVAECLGKLVLIEPESL---LPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLK 1014 (1233)
T ss_pred ch-----hhhHHHHHHHhhhHHhCChHHH---HHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHH
Confidence 22 3458899999999999999754 45544444 8999999999998876666677899999877 8899
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHccccccchhHHH
Q 000705 1021 RLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054 (1342)
Q Consensus 1021 ~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~ 1054 (1342)
.++|||+.|||-||.++..-+-|-===+||-+-+
T Consensus 1015 ~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpe 1048 (1233)
T KOG1824|consen 1015 LLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPE 1048 (1233)
T ss_pred HHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHH
Confidence 9999999999999999987665533333333333
No 21
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.77 E-value=0.012 Score=65.28 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHHhhcCHH----HHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-hHHHhhhcCCC
Q 000705 951 YPELQASAMLALCRFMIIDAD----YCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-TENMYARLKDP 1025 (1342)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~----~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~-t~~ly~~L~D~ 1025 (1342)
...+...|..++..+...-.. +++.-+|.|+..+ .++...||..+.-+|..++-..| ....- .+.+...+.++
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSK 143 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCC
Confidence 356788888888877655443 4555566666666 44567899999999999888766 11222 57888899999
Q ss_pred CHHHHHHHHHHHHHHHHccc-----cccch---hH-HHHHHHhcCCChhHHHHHHHHHHHHhc
Q 000705 1026 SMAVRKNAVLVLSHLILNDM-----MKVKG---YI-NEMAIRVEDEDQRISNLAKLFFHELSK 1079 (1342)
Q Consensus 1026 ~~~VR~~~l~vlthLIl~dm-----iKvKg---~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~ 1079 (1342)
++.||..|+..|.+.+..-= +...+ ++ .-+.+|+.|+++.+|+.||..|..+.+
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999875433 33222 34 568899999999999999999986644
No 22
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=4.3 Score=54.19 Aligned_cols=410 Identities=15% Similarity=0.154 Sum_probs=216.9
Q ss_pred cchhHHHHHHHHHHHHHhh-ccc-hhhhH----HHHHHHHh-hcccc-hHHHHHHHHHHHHHcCCchhHHHHHHHHhhcC
Q 000705 223 KDADTKDALCRIIGACATK-YHY-IEQSC----ASIMHLIH-KYDFV-VVHMADAVAGAEKKYADGSLATYLIREIGRTN 294 (1342)
Q Consensus 223 K~~~~r~~if~il~~~vk~-y~h-~~~~~----~~IiqlL~-~~ehl-~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~ 294 (1342)
.+..+|...--.+...+.+ |.- ....+ ++|++.++ .-+|. ...+|+.++.+++.-... ==.++|.-+-+-.
T Consensus 49 ~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~ 127 (1075)
T KOG2171|consen 49 ADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQST 127 (1075)
T ss_pred CChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHh
Confidence 5667777655555444444 322 22334 44444433 33332 366788887777654333 1134444443322
Q ss_pred CCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHH----HHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhh
Q 000705 295 PKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLI----LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVR 370 (1342)
Q Consensus 295 ~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~----~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~ 370 (1342)
.+ .|.+.--.-=.-|..+.+..+....+++..|. +.++.+|-++|-+-+.++|.++...-.+...-+..+..
T Consensus 128 ~S---~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~l- 203 (1075)
T KOG2171|consen 128 KS---PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDL- 203 (1075)
T ss_pred cC---CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHH-
Confidence 11 12222222223356677777776666555554 44667788899999999999975532111110111222
Q ss_pred hhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHhhC
Q 000705 371 LRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRL--EDKSAIVRKSALNLLVMMLQHN 447 (1342)
Q Consensus 371 ~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL--~DKSs~VRK~AiqLL~~lL~~n 447 (1342)
.=.++..|.+=+.|-+.=+=.-+|..+..|.+. ..+-..+...|+....+=. .+....+|-.||++|..+.++-
T Consensus 204 ---lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 204 ---LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred ---hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 345777888888887777777888888888885 3444345556666554444 4555789999999999999987
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhh-hhhcccCCCCCccccc
Q 000705 448 PFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQ-QESLTDSCLPLADEGI 526 (1342)
Q Consensus 448 Pfg~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~-~ea~~~~~~~~~~~~~ 526 (1342)
|-+.+++.. +-.+|=-. -|.-|.+. ..+.++.+.+++++|. +++...- ..++
T Consensus 281 p~~~k~~~~-~~~~lv~~--~l~~mte~----------~~D~ew~~~d~~ded~--~~~~~~~A~~~l------------ 333 (1075)
T KOG2171|consen 281 PAMCKKLAL-LGHTLVPV--LLAMMTEE----------EDDDEWSNEDDLDEDD--EETPYRAAEQAL------------ 333 (1075)
T ss_pred HHHhhhchh-hhccHHHH--HHHhcCCc----------ccchhhcccccccccc--ccCcHHHHHHHH------------
Confidence 755544433 22222111 12222110 0112233222111111 1110000 0000
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcch
Q 000705 527 ADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPL 606 (1342)
Q Consensus 527 ~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~L 606 (1342)
..+.-.+-=..++--.++.++++|.|.+-.+=.-|+-=|..+ .+|+.+-|++-|+=
T Consensus 334 --------------------DrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i----~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 334 --------------------DRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVI----AEGCSDVMIGNLPK 389 (1075)
T ss_pred --------------------HHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HcccHHHHHHHHHH
Confidence 000000000023334567778889888888877776666555 47777777765543
Q ss_pred hcccCccHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCC
Q 000705 607 VLSQDKSIYEAVENAFITIYVRKS---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVS 683 (1342)
Q Consensus 607 VWskd~~I~~~vi~ay~~Ly~~~~---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~ 683 (1342)
| -+.|++- ++.| ..+.|-|.|..+..- |---+..-. ...+.+..+..+ ...
T Consensus 390 I-------l~~Vl~~-----l~DphprVr~AA~naigQ~std-------l~p~iqk~~-~e~l~~aL~~~l------d~~ 443 (1075)
T KOG2171|consen 390 I-------LPIVLNG-----LNDPHPRVRYAALNAIGQMSTD-------LQPEIQKKH-HERLPPALIALL------DST 443 (1075)
T ss_pred H-------HHHHHhh-----cCCCCHHHHHHHHHHHHhhhhh-------hcHHHHHHH-HHhccHHHHHHh------ccc
Confidence 2 3333332 2233 456666666555411 111111111 113444444433 334
Q ss_pred CCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHH
Q 000705 684 GTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIID 717 (1342)
Q Consensus 684 ~~s~~~~r~Al~lL~Mia~~~~~Iv~~~l~~l~~ 717 (1342)
+....+.++|--++.-.....++++..-|+.|+.
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4567788888888888888888999888888877
No 23
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.012 Score=74.11 Aligned_cols=188 Identities=19% Similarity=0.268 Sum_probs=142.8
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHH
Q 000705 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVR 1030 (1342)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR 1030 (1342)
|-.+..-..+-|+.+...-...|.-.++.+.+=. ..++|-||+=++=-+| +.|.+++++-+..-|-++|+|.++.||
T Consensus 62 dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~-~d~np~iR~lAlrtm~--~l~v~~i~ey~~~Pl~~~l~d~~~yvR 138 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDC-EDPNPLIRALALRTMG--CLRVDKITEYLCDPLLKCLKDDDPYVR 138 (734)
T ss_pred CchHHHHHHHHHHHhhccCchHHHhhhhhhhccC-CCCCHHHHHHHhhcee--eEeehHHHHHHHHHHHHhccCCChhHH
Confidence 3445555555555555555555555444444433 5678889975544444 579999999999999999999999999
Q ss_pred HHHHHHHH--HHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc-hhhhhhhHHHhhccC--CCCChhH
Q 000705 1031 KNAVLVLS--HLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNN-PIYNLLPDILGKLCN--QNLKTES 1105 (1342)
Q Consensus 1031 ~~~l~vlt--hLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n-~iyn~~pdiis~Ls~--~~~~~~~ 1105 (1342)
+++..-+. |+|-.+|+-.-|-+..+--++-|+||.+-.-|-.=..|++..+|+ ...+.-+.++.+|-. ...++=.
T Consensus 139 ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~ 218 (734)
T KOG1061|consen 139 KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWG 218 (734)
T ss_pred HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhh
Confidence 99887665 678899999999988777788899999999999999999999874 566666777776632 1445555
Q ss_pred HHHHHHHHHhhhhhh-hhHHHHHHHHHhhhhcccchh
Q 000705 1106 FCNIMQLLIGFIKKD-KQMEALVEKLCNRFSGVTDIR 1141 (1342)
Q Consensus 1106 f~~I~~fLl~~i~Kd-Kq~e~LveKLc~Rf~~~~~~r 1141 (1342)
--.|++.+..|..|| +-++++++++|.|+.-+....
T Consensus 219 qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~av 255 (734)
T KOG1061|consen 219 QIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAV 255 (734)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcce
Confidence 567999999999765 478999999999999886443
No 24
>PRK09687 putative lyase; Provisional
Probab=96.39 E-value=0.076 Score=61.57 Aligned_cols=133 Identities=20% Similarity=0.114 Sum_probs=89.0
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.++.+|++|+-+||.++.-.......-++.+...+ ..+++.||-.++-+||.+.- +.-.+.|-..|.|+++.|
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVIND------EAAIPLLINLLKDPNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhcCCCHHH
Confidence 56788989999998875433223333333333333 56688899988888885532 345677888888999999
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC
Q 000705 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ 1099 (1342)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~ 1099 (1342)
|..|+.-|.++ +. .-..-+..+..+|.|+|+.|+.-|-.-+.++... ..+|-+|..|.++
T Consensus 176 R~~A~~aLg~~---~~-~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~------~av~~Li~~L~~~ 235 (280)
T PRK09687 176 RNWAAFALNSN---KY-DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK------RVLSVLIKELKKG 235 (280)
T ss_pred HHHHHHHHhcC---CC-CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh------hHHHHHHHHHcCC
Confidence 99998888877 11 1123335577788899998888888766654222 3567777777654
No 25
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.19 Score=64.74 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=137.0
Q ss_pred hhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcC
Q 000705 908 KLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESS 987 (1342)
Q Consensus 908 ~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s 987 (1342)
-.|++..|.- .+..| +. ++.+.|=|++-... +|..|++--.+-|-.+--..++-|--.++.+.+=+ .+
T Consensus 36 kidAmK~iIa-~M~~G----~d-mssLf~dViK~~~t-----rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl-~d 103 (757)
T COG5096 36 KIDAMKKIIA-QMSLG----ED-MSSLFPDVIKNVAT-----RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDL-QD 103 (757)
T ss_pred HHHHHHHHHH-HHhcC----CC-hHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhc-cC
Confidence 3577888877 44567 44 55555655544432 68899999999999999999988888888888888 78
Q ss_pred CChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchh-HHHHHH-HhcCCChh
Q 000705 988 PSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGY-INEMAI-RVEDEDQR 1065 (1342)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~-l~~~a~-~l~D~d~~ 1065 (1342)
++|-||++++=.||+| |=|.+++++.+-+=++|.|+++.|||+|..-+.-|-.-|+=-+.+- +.+..+ ++.|+||.
T Consensus 104 ~N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~ 181 (757)
T COG5096 104 PNEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPI 181 (757)
T ss_pred CCHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCch
Confidence 9999999999999987 5599999999999999999999999999999999986665555554 444444 55599999
Q ss_pred HHHHHHHHHHHHhccCCchhhhhhhHHHhhcc
Q 000705 1066 ISNLAKLFFHELSKKGNNPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1066 I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1342)
+-.-|-.=+.++....-...+..+.-.|.+|.
T Consensus 182 Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 182 VIANALASLAEIDPELAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHHHHHHHHHhchhhhhhHHHHHHHHhhhcc
Confidence 98888776777776633556666666666654
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=1.5 Score=55.18 Aligned_cols=409 Identities=17% Similarity=0.217 Sum_probs=227.5
Q ss_pred HHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccc
Q 000705 670 TISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKL 749 (1342)
Q Consensus 670 vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~Iv~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~ 749 (1342)
+|-++.+.|. .-++.=|.-|+--+--.--..+.-+..++|..+.+.+.-....|+..-+..|++|..|-.- +...
T Consensus 175 mipkfl~f~~----h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dk 249 (885)
T KOG2023|consen 175 MIPKFLQFFK----HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDK 249 (885)
T ss_pred hHHHHHHHHh----CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHh
Confidence 3556666664 2255555555444332222334445568998888777666788999999999999888542 1111
Q ss_pred cccCcchHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 000705 750 LLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMP 829 (1342)
Q Consensus 750 r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~ 829 (1342)
-.|+-+.|++-+..... ..+. .+|-.|-..-.+++++| +|.++++....++-.
T Consensus 250 l~phl~~IveyML~~tq---d~dE---~VALEACEFwla~aeqp--i~~~~L~p~l~kliP------------------- 302 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQ---DVDE---NVALEACEFWLALAEQP--ICKEVLQPYLDKLIP------------------- 302 (885)
T ss_pred cccchHHHHHHHHHHcc---Ccch---hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH-------------------
Confidence 23554555544433321 2333 38888889999999999 777776665544310
Q ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhh---ccccCCCCCCCCCCccchhhhhccccc
Q 000705 830 TSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKE--KMIADDQ---NIHSNNNTNGDLPKDTSINAELGLAAS 904 (1342)
Q Consensus 830 ~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~e--k~~~~~~---~~~~~~~~~~~~~~~~~~~~Elgl~t~ 904 (1342)
|-+.-|+|=|..+.-++ ..+++ ....+.+ +..+ ++..++..+. ..
T Consensus 303 -----------------vLl~~M~Ysd~D~~LL~--~~eeD~~vpDreeDIkPRfhk----sk~~~~~~~~-------~~ 352 (885)
T KOG2023|consen 303 -----------------VLLSGMVYSDDDIILLK--NNEEDESVPDREEDIKPRFHK----SKEHGNGEDA-------DD 352 (885)
T ss_pred -----------------HHHccCccccccHHHhc--CccccccCCchhhhccchhhh----chhccCcccc-------cc
Confidence 11122333333332222 00000 0000000 0000 0000000000 01
Q ss_pred hhhhhhhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH
Q 000705 905 EDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV 984 (1342)
Q Consensus 905 eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~l 984 (1342)
||++-|. .=.+ .-+ .+=.||.|..-+|.=+ +.-|=++-||.+|-.|
T Consensus 353 eDdddDe--------~DDd-----D~~------------------~dWNLRkCSAAaLDVL---anvf~~elL~~l~PlL 398 (885)
T KOG2023|consen 353 EDDDDDE--------DDDD-----DAF------------------SDWNLRKCSAAALDVL---ANVFGDELLPILLPLL 398 (885)
T ss_pred ccccccc--------cccc-----ccc------------------ccccHhhccHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 2222111 0011 111 2336777777777644 5567777777777776
Q ss_pred hc---CCChhhHhhHHHHhhhhhhccCcccccc----hHHHhhhcCCCCHHHHHHHHHHH---HHHHHccc--cccchhH
Q 000705 985 ES---SPSEIVRSNCTIALGDLAVRFPNLLEPW----TENMYARLKDPSMAVRKNAVLVL---SHLILNDM--MKVKGYI 1052 (1342)
Q Consensus 985 e~---s~~~~vR~N~vi~lgDL~~rfpnlvep~----t~~ly~~L~D~~~~VR~~~l~vl---thLIl~dm--iKvKg~l 1052 (1342)
+. ++.+.||.-.|.|+|-+|-=--+-+=|| .|++-.+|.|+.|.||+-|-=+| +|-+..+= --.|..+
T Consensus 399 k~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL 478 (885)
T KOG2023|consen 399 KEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVL 478 (885)
T ss_pred HHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHH
Confidence 44 5678999999999998875443334444 57788899999999999764444 45555554 1234455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccC-------C--CCChhHHHHHHHHHHhhhhhhhhH
Q 000705 1053 NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCN-------Q--NLKTESFCNIMQLLIGFIKKDKQM 1123 (1342)
Q Consensus 1053 ~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~-------~--~~~~~~f~~I~~fLl~~i~KdKq~ 1123 (1342)
-.+.+++.|.+.++..-|=.=|..|-.....-+.-++-.|+-+|-- . -+=.+...+.-...=..++|-.-+
T Consensus 479 ~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi 558 (885)
T KOG2023|consen 479 EGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI 558 (885)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH
Confidence 6799999999999999998877766555323333333333333320 0 111122222222222233333333
Q ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhC------chHHHHHHHHHHHHh
Q 000705 1124 EALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALS------EDSVMDNFRNIINKS 1190 (1342)
Q Consensus 1124 e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~------d~~V~~~F~~Ii~k~ 1190 (1342)
+-|+.-|.++ .++|+-++|.+=-|.||+.+..-.|+ -++||++=..|+.|+
T Consensus 559 qiLmPPLi~K----------------W~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 559 QILMPPLIEK----------------WELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKT 615 (885)
T ss_pred HHhccHHHHH----------------HHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 3333333322 25677788888889999999988885 468999988888876
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.15 E-value=0.018 Score=56.06 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc-----cchHHHhhhcCCCCHHHHHHHHHHHHHHHHcc-----cc
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE-----PWTENMYARLKDPSMAVRKNAVLVLSHLILND-----MM 1046 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlve-----p~t~~ly~~L~D~~~~VR~~~l~vlthLIl~d-----mi 1046 (1342)
+|.|...|. ++++.+|.+++.+++-++...|.... .-.+.+-..|+|+++.||+.|+..|++|..++ .+
T Consensus 9 i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 456666663 44466777777777777665333222 33556666777778888888888888876554 22
Q ss_pred ccchhHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 000705 1047 KVKGYINEMAIRVEDEDQRISNLAKLFFHELS 1078 (1342)
Q Consensus 1047 KvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~ 1078 (1342)
.-.|-+..+..++.+++.+++..|-.+|..|.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22455677777777777788777777776653
No 28
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.02 E-value=0.047 Score=53.13 Aligned_cols=101 Identities=23% Similarity=0.162 Sum_probs=80.3
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpn 1009 (1342)
.|.+.+.+.+ .++.++..|+.+|++++..++..+.. -+|.|...|. ++++.+|.+++-+|+-|+...|.
T Consensus 9 i~~l~~~l~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 9 LPALVSLLSS-----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred hHHHHHHHHc-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHH
Confidence 4555555555 45789999999999998876665554 4688888884 57899999999999999987764
Q ss_pred ccc-----cchHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000705 1010 LLE-----PWTENMYARLKDPSMAVRKNAVLVLSHLI 1041 (1342)
Q Consensus 1010 lve-----p~t~~ly~~L~D~~~~VR~~~l~vlthLI 1041 (1342)
..+ .-.+.+-..|.+++..||+.++.+|.+|.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 322 14778888999999999999999999874
No 29
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.86 E-value=0.13 Score=58.86 Aligned_cols=128 Identities=17% Similarity=0.264 Sum_probs=98.9
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHH------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc--ccccchHHHhhh
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDA------NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN--LLEPWTENMYAR 1021 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~------~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpn--lvep~t~~ly~~ 1021 (1342)
+||.+|..|..+|++...- .|+.+ -++++.++| ..|+|.+|.+++-++.+|+.-.+| .|+.|.+++-..
T Consensus 25 ~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 6899999999999996332 24443 368888998 668999999999999999998776 477888888875
Q ss_pred cCC--CCHHHHHHHHHHHHHHHHcc---ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000705 1022 LKD--PSMAVRKNAVLVLSHLILND---MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1022 L~D--~~~~VR~~~l~vlthLIl~d---miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1342)
... -+..|+..+|.+|++|-..+ -+ +.+.+..+..+|.-.+..++--+-..+..||.+.
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhh-HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 333 36789999999999996555 11 2346777778888888888777777777787764
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.66 E-value=0.031 Score=52.25 Aligned_cols=82 Identities=24% Similarity=0.356 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHH
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMA 1056 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a 1056 (1342)
+|.|+..|.+++++.||.+++-++|.+. .| .-.+.+...|+|+++.||..++..|..+ .-+.-+-.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i------~~~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP----EAIPALIELLKDEDPMVRRAAARALGRI------GDPEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCC------HHHHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHh------CCHHHHHHHH
Confidence 5788888988999999999999999543 22 3367788888999999999999998865 2233344566
Q ss_pred HHhcCCC-hhHHHHH
Q 000705 1057 IRVEDED-QRISNLA 1070 (1342)
Q Consensus 1057 ~~l~D~d-~~I~~~a 1070 (1342)
.++.|++ ..++..|
T Consensus 69 ~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 69 KLLQDDDDEVVREAA 83 (88)
T ss_dssp HHHTC-SSHHHHHHH
T ss_pred HHHcCCCcHHHHHHH
Confidence 6666654 4445544
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.54 E-value=0.27 Score=54.60 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=94.0
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHhHH----HHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000705 301 DTVGAENIGRFLVELADRLPKLISTNIGVL----ILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1342)
Q Consensus 301 Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L----~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1342)
-++..++-..++..|+...+.-+-+.+..+ +..+....-.+|.+...++..|+...- -. ..-
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~----~~~ 131 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----------YS----PKI 131 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cH----HHH
Confidence 456677778888888877777665555544 445677788999999999999984321 01 233
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC---cchh---hHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000705 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHS---VSIG---LWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 377 lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~---iP~~---~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
++..|.....+.|+-+|..+++.+..+++... -.+. ....+......-|.|.++-||++|-+.+..+..+.|
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 48889999999999999999999999988644 1111 135789999999999999999999999999977666
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.54 E-value=2 Score=53.99 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=151.8
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHH-----HhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000705 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCD-----ANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~-----~~l~llf~~le~s~~~~vR~N~vi~lgD 1002 (1342)
.+++..|.|++...-.+ .++.+|.-|+-+++++---++..++ .-+++++..| ..++..|...++-+|.+
T Consensus 72 ~~l~~~~~~~L~~gL~h-----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTH-----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKK 145 (503)
T ss_pred HHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHH
Confidence 67888999999988877 5689999999999998766666333 4468888888 88899999999999999
Q ss_pred hhhccCcc---cccc-hHHHhhhcCCCCHHHHHHHHHHHHHHH-----HccccccchhHHHHHHHhcCCChhHHHHHHHH
Q 000705 1003 LAVRFPNL---LEPW-TENMYARLKDPSMAVRKNAVLVLSHLI-----LNDMMKVKGYINEMAIRVEDEDQRISNLAKLF 1073 (1342)
Q Consensus 1003 L~~rfpnl---vep~-t~~ly~~L~D~~~~VR~~~l~vlthLI-----l~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~f 1073 (1342)
|+-..+.+ +++. ..+|-..+..++..||...+.++.++- .-.++.-+|-+..+..+|.++|.-++--|-..
T Consensus 146 l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 146 LASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred HhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 99654443 2333 566666676668999999999999985 33566678888899999999888888777788
Q ss_pred HHHHhccCCchhh----hhhhHHHhhccCCCCCh----hHHHHHHHHHHhhhh-hhhhHH----HHHHHHHhhhhcccch
Q 000705 1074 FHELSKKGNNPIY----NLLPDILGKLCNQNLKT----ESFCNIMQLLIGFIK-KDKQME----ALVEKLCNRFSGVTDI 1140 (1342)
Q Consensus 1074 f~eL~~K~~n~iy----n~~pdiis~Ls~~~~~~----~~f~~I~~fLl~~i~-KdKq~e----~LveKLc~Rf~~~~~~ 1140 (1342)
+.+|+.+..+.=| +.++.+...+.+..-++ =-.-.+|+|.=..-. ...+.. .++++|. ++-...++
T Consensus 226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~-~~~~s~d~ 304 (503)
T PF10508_consen 226 LSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF-SMLESQDP 304 (503)
T ss_pred HHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 9999986433321 12333333333221111 111224455432222 122222 3333333 22233344
Q ss_pred hhHHHHHH-HHhccCCChhHHHHH
Q 000705 1141 RQWEYISY-CLSQLAFTEKGMKKL 1163 (1342)
Q Consensus 1141 rqwrdiaf-cLslL~~~ek~ikKL 1163 (1342)
.. +.+|| +|+.|-.+.+|-.-|
T Consensus 305 ~~-~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 305 TI-REVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred hH-HHHHHHHHHHHhCCHHHHHHH
Confidence 33 36677 999999999997777
No 33
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.34 E-value=0.24 Score=63.86 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=129.5
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHH
Q 000705 268 DAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVG 347 (1342)
Q Consensus 268 e~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve 347 (1342)
..++.|....|.+.|..+|+|.+. + +|..--|=+-.+|...|+.-|..++-.+..+++-|..++=.+|++.+-
T Consensus 42 ~iIa~M~~G~dmssLf~dViK~~~--t-----rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR 114 (757)
T COG5096 42 KIIAQMSLGEDMSSLFPDVIKNVA--T-----RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALR 114 (757)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHH--h-----cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 445556666677888999999986 2 566777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcC--CcchhhHHHHHHHHHhhc
Q 000705 348 VLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEH--SVSIGLWNEVAEVAAGRL 425 (1342)
Q Consensus 348 vig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~--~iP~~~~~~v~~~av~RL 425 (1342)
.+|.+=. ++- ...+++.+.+.+.|-|||||..|.=++.+|.+.+ -+|-. +...+-..=+
T Consensus 115 ~ls~l~~------------~el----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~---g~~~~l~~l~ 175 (757)
T COG5096 115 TLSLLRV------------KEL----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL---GLIDILKELV 175 (757)
T ss_pred HHHhcCh------------HHH----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc---cHHHHHHHHh
Confidence 9998721 123 6789999999999999999999999999999753 23311 2344444556
Q ss_pred cCCchhHHHHHHHHHHHHHhh--CCCC-------CCCChhHHHH
Q 000705 426 EDKSAIVRKSALNLLVMMLQH--NPFG-------PQLRIASFEA 460 (1342)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL~~--nPfg-------~~L~~~~~~~ 460 (1342)
.|-++.|-.||+.-|..+=.. +||. ++|....|..
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~ 219 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSV 219 (757)
T ss_pred hCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhh
Confidence 799999999999877766332 4442 4555555553
No 34
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.22 E-value=0.1 Score=69.63 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=89.2
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW 1014 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~ 1014 (1342)
.|.+..+..+ .++.+|++|+.+|+++..-. .-.+.+...| .++++.||..++-+||-+.- +.-
T Consensus 777 ~~~L~~ll~D-----~d~~VR~aA~~aLg~~g~~~-----~~~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~------~~a 839 (897)
T PRK13800 777 GDAVRALTGD-----PDPLVRAAALAALAELGCPP-----DDVAAATAAL-RASAWQVRQGAARALAGAAA------DVA 839 (897)
T ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHhcCCcc-----hhHHHHHHHh-cCCChHHHHHHHHHHHhccc------cch
Confidence 3555555555 57899999999999996531 1235577777 66789999999999997652 334
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchh-HHHHHHHhcCCChhHHHHHHH
Q 000705 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGY-INEMAIRVEDEDQRISNLAKL 1072 (1342)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~-l~~~a~~l~D~d~~I~~~a~~ 1072 (1342)
.+.|...|.|+++.||+.++..|..+ +.... ...+..++.|+|+.|+.-|..
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58899999999999999999999885 32333 356778999999999998875
No 35
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=21 Score=48.21 Aligned_cols=247 Identities=14% Similarity=0.159 Sum_probs=155.1
Q ss_pred HHHHhcccccccc-----CCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhc---cchh-------h
Q 000705 183 IANSLEINLPLLF-----GSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKY---HYIE-------Q 247 (1342)
Q Consensus 183 l~~~L~l~l~~Lw-----~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y---~h~~-------~ 247 (1342)
+++.|+-.||.|. .|..+++.|-.++--.+--++++ +.+|..|++-|-+++..- ..+. .
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~------~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~ 563 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR------PELRETICNSLRMLVEQNKPSSDAAENKEVLSN 563 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc------hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhh
Confidence 5555555555553 36777888988887777777654 478888998888888773 2211 1
Q ss_pred hHHHHHH-HHhhcccch--H-HHHHHH----HHHH-H--HcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHH
Q 000705 248 SCASIMH-LIHKYDFVV--V-HMADAV----AGAE-K--KYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELA 316 (1342)
Q Consensus 248 ~~~~Iiq-lL~~~ehl~--~-~~Ae~l----~~l~-~--~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~La 316 (1342)
.....++ +..+|.--+ . +..+.. .... . +-....++..+..-++.....- .++..+.-...+|-.+.
T Consensus 564 ~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~--~~s~~~~~~~slLdl~~ 641 (1176)
T KOG1248|consen 564 DAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDL--DESVASFKTLSLLDLLI 641 (1176)
T ss_pred hhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccc--hhhhhhHHHHHHHHHHH
Confidence 1222222 333333222 1 111111 1111 1 1123456666666666554321 35666666777888888
Q ss_pred hhhhhHHHhhHhHHH---HHhCCC-chhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchh
Q 000705 317 DRLPKLISTNIGVLI---LHFGGE-SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYT 392 (1342)
Q Consensus 317 e~~P~lvl~~is~L~---~~Ld~e-sY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayV 392 (1342)
...|..--.+++.+. +.+++. +-.++.=--.+++++... ... +....+ -.+.+++.|..=+.++..++
T Consensus 642 ~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~----~s~-~~~~~q---~i~~I~n~L~ds~qs~~~~~ 713 (1176)
T KOG1248|consen 642 ALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS----PSG-EGLVEQ---RIDDIFNSLLDSFQSSSSPA 713 (1176)
T ss_pred hhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC----Cch-hhHHHH---HHHHHHHHHHHHHhccchHH
Confidence 888877666666554 445543 667777666777776533 211 112222 16889999999999999999
Q ss_pred hHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000705 393 RSRVLQVWAELCEEHS-VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 393 RskvLQ~~~~L~e~~~-iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1342)
|...+.+|..|.+..- --.....+.+..++=.+.|-+.--|++|.+||..+..
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 9999999999999642 3333334566666666799999999999999999875
No 36
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=94.36 E-value=0.24 Score=46.22 Aligned_cols=86 Identities=20% Similarity=0.273 Sum_probs=64.3
Q ss_pred HhHHHHHh-CCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHh
Q 000705 327 IGVLILHF-GGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCE 405 (1342)
Q Consensus 327 is~L~~~L-d~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e 405 (1342)
|..|++.| ++++..+|-.++.++|++ . ....+..|.+.+.|-++.||..|+..+.++=.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------------~----~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------------G----DPEAIPALIELLKDEDPMVRRAAARALGRIGD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------------T----HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------------C----CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 35678888 888899999999999932 0 23567777777799999999999999998743
Q ss_pred cCCcchhhHHHHHHHHHhhccC-CchhHHHHHHHHHH
Q 000705 406 EHSVSIGLWNEVAEVAAGRLED-KSAIVRKSALNLLV 441 (1342)
Q Consensus 406 ~~~iP~~~~~~v~~~av~RL~D-KSs~VRK~AiqLL~ 441 (1342)
. ++.......+.| .+..||..|++-|+
T Consensus 61 ~---------~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 P---------EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp H---------HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3 344444455655 66778999988653
No 37
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.25 E-value=2.1 Score=54.41 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=72.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC--------------CCChhHHHHHHHHHHhhhhh
Q 000705 1054 EMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--------------NLKTESFCNIMQLLIGFIKK 1119 (1342)
Q Consensus 1054 ~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--------------~~~~~~f~~I~~fLl~~i~K 1119 (1342)
.+-..++|.||..+-++-+.|.-+++++|.++--+--=|+--|+|. -++++....|.|-|+.|+.+
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEK 382 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 4556789999999999999999999999777655544444445653 26889999999999999976
Q ss_pred hhhHHHHHHHHHhhhhcc--------cchhhHHHHHHH-HhccCCChh
Q 000705 1120 DKQMEALVEKLCNRFSGV--------TDIRQWEYISYC-LSQLAFTEK 1158 (1342)
Q Consensus 1120 dKq~e~LveKLc~Rf~~~--------~~~rqwrdiafc-LslL~~~ek 1158 (1342)
..- ...-+++..|.-.. -+...|..-.+. |..||.++.
T Consensus 383 ae~-t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~ 429 (877)
T KOG1059|consen 383 AEG-TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRH 429 (877)
T ss_pred ccc-hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccch
Confidence 533 34444444444332 256777765554 677776553
No 38
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.23 E-value=0.039 Score=47.66 Aligned_cols=51 Identities=35% Similarity=0.495 Sum_probs=37.6
Q ss_pred hhhHhhHHHHhhhhhhccCcccccchHH----HhhhcCCCCHHHHHHHHHHHHHH
Q 000705 990 EIVRSNCTIALGDLAVRFPNLLEPWTEN----MYARLKDPSMAVRKNAVLVLSHL 1040 (1342)
Q Consensus 990 ~~vR~N~vi~lgDL~~rfpnlvep~t~~----ly~~L~D~~~~VR~~~l~vlthL 1040 (1342)
|.||.+++-+||-++...|..+.|+.+. |..+|.|+++.||.+|.-.|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4678888888888888888888777544 44577788888888887776543
No 39
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.20 E-value=0.75 Score=58.79 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=62.8
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc
Q 000705 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE 1012 (1342)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlve 1012 (1342)
..+|-|.++|.+ ++|.+|.=|++|+.||---.++.-+-.++-+.+.| .+.++.|---.+-.+-+||-+-|..++
T Consensus 142 dlapeVe~Ll~~-----~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 142 DLAPEVERLLQH-----RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HhhHHHHHHHhC-----CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 368999999988 67889999999999999988888777777777777 566666666666667777777665555
Q ss_pred cc---hHHHhhhcCC
Q 000705 1013 PW---TENMYARLKD 1024 (1342)
Q Consensus 1013 p~---t~~ly~~L~D 1024 (1342)
-| ++.+...|++
T Consensus 216 ~fr~l~~~lV~iLk~ 230 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQ 230 (866)
T ss_pred HHHHHHHHHHHHHHH
Confidence 54 3444444443
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.4 Score=59.88 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHH---------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC----cccccchHHHh
Q 000705 953 ELQASAMLALCRFMIIDADYCDA---------NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP----NLLEPWTENMY 1019 (1342)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~---------~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfp----nlvep~t~~ly 1019 (1342)
.-+.-|+-+|.|.|-=|+++-+. -+|-|+... ++++|.||+-++-++.-+..--| +-||.|+..+|
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 45668999999999988888765 578888888 66799999999888776654443 34789999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHccccccchhH----HHHHHHhcCCChhHHHHHHHHHHHHhccC--CchhhhhhhHHH
Q 000705 1020 ARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI----NEMAIRVEDEDQRISNLAKLFFHELSKKG--NNPIYNLLPDIL 1093 (1342)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l----~~~a~~l~D~d~~I~~~a~~ff~eL~~K~--~n~iyn~~pdii 1093 (1342)
+.=.|+++.|||+--.-|+||+-=-+=|.-.|+ -.|.....|.|+.|+==|=-|..-++... +..+--++|++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kli 301 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLI 301 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999876666665555 47899999999999999999999998862 255666777777
Q ss_pred hhc
Q 000705 1094 GKL 1096 (1342)
Q Consensus 1094 s~L 1096 (1342)
--|
T Consensus 302 PvL 304 (885)
T KOG2023|consen 302 PVL 304 (885)
T ss_pred HHH
Confidence 665
No 41
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.05 E-value=1.5 Score=54.43 Aligned_cols=116 Identities=19% Similarity=0.140 Sum_probs=86.3
Q ss_pred HHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 000705 322 LISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWA 401 (1342)
Q Consensus 322 lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~ 401 (1342)
+|-+-+-.++..+++.--++|.-++++++-++--+- +.++ .. -+.++..|.+|++|--+-||--|+.++.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~---eIDe---~l----~N~L~ekl~~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR---EIDE---VL----ANGLLEKLSERLFDREKAVRREAVKVLC 157 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc---hHHH---HH----HHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 455556678889999999999999999998763321 1111 12 6889999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCC
Q 000705 402 ELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGP 451 (1342)
Q Consensus 402 ~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~ 451 (1342)
++.+..-=|..+...++...++ .|.|+-|||.|+--|. ..++.|+.
T Consensus 158 ~~Qe~~~neen~~~n~l~~~vq--nDPS~EVRr~allni~--vdnsT~p~ 203 (885)
T COG5218 158 YYQEMELNEENRIVNLLKDIVQ--NDPSDEVRRLALLNIS--VDNSTYPC 203 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHh--cCcHHHHHHHHHHHee--eCCCcchh
Confidence 9998776676665554444444 7999999999975543 34444443
No 42
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.99 E-value=0.36 Score=64.96 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=121.3
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH-HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhc
Q 000705 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY-CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVR 1006 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~-c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~r 1006 (1342)
.++...|-|.+..|.+--+. .-+.||+-|+-||+-+--+++.. |..-++.=+.-=-...+..||.-++=-+|=+...
T Consensus 808 r~f~~sfD~yLk~Il~~l~e--~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGE--NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 44555666666666555443 35789999999999999998865 5555544332212445578999999999999999
Q ss_pred cCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHH--HccccccchhHHHHHHHhcCCChhHHHHHHHHHHH-HhccCCc
Q 000705 1007 FPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLI--LNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHE-LSKKGNN 1083 (1342)
Q Consensus 1007 fpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLI--l~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~e-L~~K~~n 1083 (1342)
+|.+++.|-+.+-.+..|....|||.++.++--.- ..|+.|.-.-.++|.+-+.|++..|++|+..-|.+ +-.+-|+
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999886543 57888888888999999999999999999886654 5555444
No 43
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.54 E-value=4.3 Score=55.68 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=113.2
Q ss_pred hhHHHHHHHHhhcCCCccc------------cCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHH
Q 000705 281 SLATYLIREIGRTNPKAYV------------KDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGV 348 (1342)
Q Consensus 281 ~l~~~ilrEI~~~~~~~~~------------~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvev 348 (1342)
.|++.+++..+..-...++ +-++-...+-..+-+|-.-+|.+++.-+..|-.-|-++.-..|--+++.
T Consensus 203 ~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~l 282 (1266)
T KOG1525|consen 203 KLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKL 282 (1266)
T ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5777788777765444332 2344556677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHH-----------------HHHHhcC----
Q 000705 349 LGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVW-----------------AELCEEH---- 407 (1342)
Q Consensus 349 ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~-----------------~~L~e~~---- 407 (1342)
+|.|+...... +. ++ -+.++..-+-|+.|.++-||-+.+|.- ..|++..
T Consensus 283 vg~~~~~~~~~--l~----~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~ 352 (1266)
T KOG1525|consen 283 VGRMFSDKDSQ--LS----ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDED 352 (1266)
T ss_pred HHHHHhcchhh--hc----cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChh
Confidence 99998653221 11 12 355666777888999988886665543 3344211
Q ss_pred ----------Ccch-----hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000705 408 ----------SVSI-----GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1342)
Q Consensus 408 ----------~iP~-----~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1342)
..+. ...+.++..+..|+.||--.||+.||+=|+.+..+
T Consensus 353 ~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 353 VRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 12224788999999999999999999999998764
No 44
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.44 E-value=58 Score=47.43 Aligned_cols=246 Identities=11% Similarity=0.038 Sum_probs=150.2
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHH-----HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCD-----ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~-----~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpn 1009 (1342)
.|.+++.-++ .++..|..|+-+|+-+..-+.+-+. .-+|.|+.+| .++++.+|.+++-+++-++.--+|
T Consensus 448 Ip~LV~LL~s-----~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 448 VQLLISLLGL-----SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcHH
Confidence 5666666665 4578999999999888665554442 4489999999 578899999999999999983222
Q ss_pred ---ccc--cchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhc-cCCc
Q 000705 1010 ---LLE--PWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSK-KGNN 1083 (1342)
Q Consensus 1010 ---lve--p~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~-K~~n 1083 (1342)
+|. .-.+.|...|++.++.+|+.++-.|.+|+..+-- .++..+.-+|..+++.+...+-.-+..+.. -+.+
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch---hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 342 2366788899999999999999999999987643 344555555666676666665443322211 1101
Q ss_pred -------hhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhh-hhHHH-----HHHHHHhhhhcccchhhHHHHHHHH
Q 000705 1084 -------PIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKD-KQMEA-----LVEKLCNRFSGVTDIRQWEYISYCL 1150 (1342)
Q Consensus 1084 -------~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~Kd-Kq~e~-----LveKLc~Rf~~~~~~rqwrdiafcL 1150 (1342)
.-.+.+|-++.-|.++ +++..+.-..-|..+..-. .+... .+.-|+.=+. ..+...-++.|+||
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL 675 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARAL 675 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHH
Confidence 0124455555555433 3444444444444444311 22222 2334444443 34555677899998
Q ss_pred hccC--CChhHHHHHHH--hHHHHHHhhC--chHHHHHHHHHHHHhhh
Q 000705 1151 SQLA--FTEKGMKKLIE--SFKTYEHALS--EDSVMDNFRNIINKSKK 1192 (1342)
Q Consensus 1151 slL~--~~ek~ikKL~e--~~~~y~dkL~--d~~V~~~F~~Ii~k~kk 1192 (1342)
+.|. .++.-..++++ ..|-.=+.|. +..|.+.=...+...=+
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 8877 35444444454 3555555554 34565555555444433
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.30 E-value=0.53 Score=63.07 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.+|.+|.+|+.+|+++-. ..-+|.|...| ..+++.||.-++-+|+-+.--.|. .+.+-..|.|+|+.|
T Consensus 633 ~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~~d~~V 700 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLGSPDPVV 700 (897)
T ss_pred CCHHHHHHHHHHHhhhcc------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhcCCCHHH
Confidence 566677777777766631 33456666666 555666666666666554321111 133445556666666
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHH
Q 000705 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLA 1070 (1342)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a 1070 (1342)
|..++..|..+-. |...-+...|.|+|+.+|.-|
T Consensus 701 R~~A~~aL~~~~~-------~~~~~l~~~L~D~d~~VR~~A 734 (897)
T PRK13800 701 RAAALDVLRALRA-------GDAALFAAALGDPDHRVRIEA 734 (897)
T ss_pred HHHHHHHHHhhcc-------CCHHHHHHHhcCCCHHHHHHH
Confidence 6666666555421 112223445556665555444
No 46
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=0.68 Score=58.47 Aligned_cols=72 Identities=25% Similarity=0.421 Sum_probs=51.1
Q ss_pred cCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000705 968 IDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHL 1040 (1342)
Q Consensus 968 vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1342)
+....+.+-.+-+||+| +|.-|-||--+|..|--++.+||.-+-|..|++-..|-||||.|.-.|+.|+--|
T Consensus 137 vTpdLARDLa~Dv~tLL-~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICEL 208 (877)
T KOG1059|consen 137 VTPDLARDLADDVFTLL-NSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICEL 208 (877)
T ss_pred cCchhhHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 56677777777777777 6666777777777777777777777777777777777777666666666554433
No 47
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.05 E-value=8 Score=48.97 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=51.1
Q ss_pred HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch
Q 000705 971 DYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG 1050 (1342)
Q Consensus 971 ~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg 1050 (1342)
+..++-+..++.++| ..+..||.++|=+|.++|..-|..|-..++-|-..|.-+++......=..|..|+-.| +||
T Consensus 55 ~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---~k~ 130 (556)
T PF05918_consen 55 DLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD---PKG 130 (556)
T ss_dssp GGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred hhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC---cHH
Confidence 333344444444443 4455677777777777777767777776776666776666544443333333333322 566
Q ss_pred hHHHHHHHhc---CCChhHHHHHHHHHHH
Q 000705 1051 YINEMAIRVE---DEDQRISNLAKLFFHE 1076 (1342)
Q Consensus 1051 ~l~~~a~~l~---D~d~~I~~~a~~ff~e 1076 (1342)
.|.-+..-+. ..|+.||.-+-.|..+
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6655555444 4566667666666654
No 48
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.03 E-value=4.3 Score=51.68 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=79.2
Q ss_pred HHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 000705 322 LISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWA 401 (1342)
Q Consensus 322 lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~ 401 (1342)
++-.-+..|+...++..-++|--|+++++.++-.. .+.++ .. -+.+.+-|..|+.|--|.||--|+-++.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~---~eidd---~v----fn~l~e~l~~Rl~Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN---AEIDD---DV----FNKLNEKLLIRLKDREPNVRIQAVLALS 151 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc---cccCH---HH----HHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 56677788899999999999999999999886311 11211 12 5788889999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000705 402 ELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1342)
Q Consensus 402 ~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1342)
++.+...=|......++...++ .|.|+-|||+|+.-|..
T Consensus 152 rlQ~d~~dee~~v~n~l~~liq--nDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLKDLIQ--NDPSDEVRRAALSNISV 190 (892)
T ss_pred HHhcCCCCCcccHHHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence 9996332222222222333332 79999999999876543
No 49
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=90.96 E-value=22 Score=45.75 Aligned_cols=169 Identities=12% Similarity=0.184 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCch-----hHHHHHHHHhhcCCCc--cccCcccc---------------chHHHHHHHHHhhhhh
Q 000705 264 VHMADAVAGAEKKYADGS-----LATYLIREIGRTNPKA--YVKDTVGA---------------ENIGRFLVELADRLPK 321 (1342)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~-----l~~~ilrEI~~~~~~~--~~~Dt~g~---------------Kn~s~FL~~Lae~~P~ 321 (1342)
.+--|....+..||+++. ++-.+++.+|.++.-+ |.++..-| ||+.....--.+.+-+
T Consensus 632 yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K 711 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK 711 (1172)
T ss_pred HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH
Confidence 344477788999999885 4445556666554332 12222222 2222222222222222
Q ss_pred HH-HhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 000705 322 LI-STNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVW 400 (1342)
Q Consensus 322 lv-l~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~ 400 (1342)
+- -+-++-++.-|-.|+-.-|.-+.+.+..++..+ -..+.++...+. -.|+++.-++|-..+.+ | .|.+|
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l-g~~diderleE~---lidgil~Afqeqtt~d~--v---ml~gf 782 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL-GAADIDERLEER---LIDGILYAFQEQTTEDS--V---MLLGF 782 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc-ccccccHHHHHH---HHHHHHHHHHhcccchh--h---hhhhH
Confidence 22 244667777788888889999999999987543 223343333332 27888888888766554 2 34444
Q ss_pred HHHHh---cCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000705 401 AELCE---EHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 401 ~~L~e---~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1342)
.-++. .++.| +..++.....-||..||+.||.+|..|++.+
T Consensus 783 g~V~~~lg~r~kp--ylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 783 GTVVNALGGRVKP--YLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred HHHHHHHhhcccc--chHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 44444 34556 5678999999999999999999999999887
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.88 E-value=1.3 Score=43.07 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=65.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000705 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 377 lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
-++...+-+.|--+-||+++|..+.+|++.+..|......++.+...-|+|.-+.|==|||+.|+.|...+|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 355666777899999999999999999998876767788999999999999999999999999999999888
No 51
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=1.1 Score=56.30 Aligned_cols=83 Identities=16% Similarity=0.366 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000705 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1342)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~ 1032 (1342)
.+|.||+-+||++.+-|..|..+.+.+|+.+ ++|+...||-.
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvDM--------------------------------------fNDE~~~VRL~ 429 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVDM--------------------------------------FNDEIEVVRLK 429 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH--------------------------------------hccHHHHHHHH
Confidence 6999999999999998888888777666544 46677777777
Q ss_pred HHHHHHHHHHccccccc-hhHHHHHHHhcCCChhHHHHHHHHHH
Q 000705 1033 AVLVLSHLILNDMMKVK-GYINEMAIRVEDEDQRISNLAKLFFH 1075 (1342)
Q Consensus 1033 ~l~vlthLIl~dmiKvK-g~l~~~a~~l~D~d~~I~~~a~~ff~ 1075 (1342)
|+-.|||++-+ ++++ .|+-.|..||+|..++||.-.+..+.
T Consensus 430 ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 430 AIFALTMISVH--LAIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777777776 3333 35566777777777777776665554
No 52
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.32 E-value=4.2 Score=54.29 Aligned_cols=125 Identities=20% Similarity=0.187 Sum_probs=88.7
Q ss_pred CChhhHhhHHHHhhhhhhccCccc--ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHcccccc---------chhHHHHH
Q 000705 988 PSEIVRSNCTIALGDLAVRFPNLL--EPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV---------KGYINEMA 1056 (1342)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpnlv--ep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv---------Kg~l~~~a 1056 (1342)
-+|.||+=||-.||+.+.-||... +-|..++==.|+|.+..||+.||.+|-||+-++=.+. |..|.+|+
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999865 7888999889999999999999999999999866554 45555566
Q ss_pred HHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhh
Q 000705 1057 IRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFI 1117 (1342)
Q Consensus 1057 ~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i 1117 (1342)
..|-+..|+..+..--..+...+ .|-+-=..+++.|-- .-+..-+...+.||...+
T Consensus 379 --drd~~~~Vrav~L~~~~~~~~~g--~L~d~di~~Vy~Li~-d~~r~~~~aa~~fl~~k~ 434 (1048)
T KOG2011|consen 379 --DRDRNVSVRAVGLVLCLLLSSSG--LLSDKDILIVYSLIY-DSNRRVAVAAGEFLYKKL 434 (1048)
T ss_pred --hhhcchhHHHHHHHHHHHHhccc--ccChhHHHHHHHHHh-ccCcchHHHHHHHHHHHh
Confidence 78889999988877555544443 222222223333310 123344555666665554
No 53
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.27 E-value=1.3 Score=56.07 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1342)
-+.+|-.|+.=.--..--||-+|+|++..|.++ .-||-.-++++.+....||.||-+.||..|+.-|+.+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 355555555333334456999999999999995 6799999999999999999999999999999998886
No 54
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.24 E-value=21 Score=43.35 Aligned_cols=207 Identities=14% Similarity=0.253 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHhhccchh-----hhHHHHHHHHh------hcccchHHHHHHHHHHHHH------cCCchhHHHHH
Q 000705 225 ADTKDALCRIIGACATKYHYIE-----QSCASIMHLIH------KYDFVVVHMADAVAGAEKK------YADGSLATYLI 287 (1342)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~-----~~~~~IiqlL~------~~ehl~~~~Ae~l~~l~~~------~~~~~l~~~il 287 (1342)
..+|-.+++++..-..+|+..+ .+...+.++|. .|+.++...-.++..+++. |..+.....|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 4677788999988899997544 46677777773 5677776666666655432 12222223333
Q ss_pred HHH--h------------hcCCCccc------cCc-cccchHHHHHHHHHhhhhhHHHhhHhHHHH-HhC------CCch
Q 000705 288 REI--G------------RTNPKAYV------KDT-VGAENIGRFLVELADRLPKLISTNIGVLIL-HFG------GESY 339 (1342)
Q Consensus 288 rEI--~------------~~~~~~~~------~Dt-~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~-~Ld------~esY 339 (1342)
..| . +-+|.+|. .|. +.-++-..||..|++.-++.+.+.++..++ +|. +..+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH
Confidence 322 0 01233322 233 344677789999999999999888765444 454 4567
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC-------CCCchhhHHHHHHHHHHHhcCCcchh
Q 000705 340 KIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR-------DVSAYTRSRVLQVWAELCEEHSVSIG 412 (1342)
Q Consensus 340 ~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~-------D~nayVRskvLQ~~~~L~e~~~iP~~ 412 (1342)
.-.-+.+-.+|.+-.+..+...+-.... ..-+...||. .++. ..+|+.|+.|+..+..--.. +|..
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~--~~v~v~~Ff~---~~v~peL~~~~~~~piLka~aik~~~~Fr~~--l~~~ 342 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTN--ELVDVVDFFS---QHVLPELQPDVNSHPILKADAIKFLYTFRNQ--LPKE 342 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B---TTS-HHHHHH---HHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG--S-HH
T ss_pred HHHHHHHHHHHHHHhhhccccCCccccc--ccccHHHHHH---HHhHHHhcccCCCCcchHHHHHHHHHHHHhh--CCHH
Confidence 7777878777777655433222111100 0011344443 3333 67888999999987766554 8989
Q ss_pred hHHHHHHHHHhhccCCchhHHHHHHH
Q 000705 413 LWNEVAEVAAGRLEDKSAIVRKSALN 438 (1342)
Q Consensus 413 ~~~~v~~~av~RL~DKSs~VRK~Aiq 438 (1342)
....++...+.-|.+.+..|+-.|-.
T Consensus 343 ~l~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 343 QLLQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhhh
Confidence 99999999999999999999987754
No 55
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.79 E-value=0.3 Score=40.58 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.1
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHH
Q 000705 415 NEVAEVAAGRLEDKSAIVRKSALNLL 440 (1342)
Q Consensus 415 ~~v~~~av~RL~DKSs~VRK~AiqLL 440 (1342)
..+.....+||.|.|+.||++|++||
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 48888999999999999999999875
No 56
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=81 Score=41.35 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=63.9
Q ss_pred ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh
Q 000705 1012 EPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL 1089 (1342)
Q Consensus 1012 ep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~ 1089 (1342)
..|..++|+|..=++..||--|+..|+..-.++-.=....+.-+-+|+.|.|..||+-|......+..++ +.++.++
T Consensus 465 skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~-~~l~~~~ 541 (865)
T KOG1078|consen 465 SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD-DVLNQNY 541 (865)
T ss_pred chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh-hhhcccc
Confidence 3489999999999999999999999999875444433344478999999999999999999999998887 6665555
No 57
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.39 E-value=4 Score=47.98 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=47.2
Q ss_pred HHHHHHHHhcC-CChhhHhhHHHHhhhhhhccCccc------------ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000705 977 LQLLFTVVESS-PSEIVRSNCTIALGDLAVRFPNLL------------EPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1342)
Q Consensus 977 l~llf~~le~s-~~~~vR~N~vi~lgDL~~rfpnlv------------ep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1342)
..+|+++|++. +++.+.-+++..++||+---|... +||.+.+. .|.-+|..++..|.-+||-|+-.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHc
Confidence 34445666666 778888888888888887766443 27888887 88888999999999999999887
Q ss_pred cccccch
Q 000705 1044 DMMKVKG 1050 (1342)
Q Consensus 1044 dmiKvKg 1050 (1342)
+=-+-.+
T Consensus 136 ~~~~~~~ 142 (312)
T PF03224_consen 136 GPKRSEK 142 (312)
T ss_dssp TTT--HH
T ss_pred CCccccc
Confidence 7655554
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.32 E-value=3.4 Score=51.27 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000705 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1342)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~ 1032 (1342)
....+++-+++..|--.++-=|.-|.-|-+..|-++.+.|---|+=.||-=.=|-|+= -.|..|+|.|+-=++..||--
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P-~~yvrhIyNR~iLEN~ivRsa 506 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP-GKYVRHIYNRLILENNIVRSA 506 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc-chHHHHHHHHHHHhhhHHHHH
Confidence 4555666666666666666666666666666777777766555555566555444432 358999999999999999999
Q ss_pred HHHHHHHHHHc--cccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000705 1033 AVLVLSHLILN--DMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1033 ~l~vlthLIl~--dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1342)
|+.-||..-+| |-+-.+....-|-+|+.|.|++||+-|-.....+-.++
T Consensus 507 Av~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 507 AVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 99999986665 55555555577889999999999999998777666554
No 59
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=89.25 E-value=93 Score=41.61 Aligned_cols=231 Identities=15% Similarity=0.202 Sum_probs=137.4
Q ss_pred cchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhh-----cccchHHHHHHHHHHH
Q 000705 200 PDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHK-----YDFVVVHMADAVAGAE 274 (1342)
Q Consensus 200 ~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~-----~ehl~~~~Ae~l~~l~ 274 (1342)
.+|.|.. +.++..++||+. +..+-....+-+|.++.+-++.- ...|+..|.. -|.+-.--+=++....
T Consensus 41 d~dSe~k-vv~~lLklL~D~----ngEVQnlAVKClg~lvsKvke~~--le~~ve~L~~~~~s~keq~rdissi~Lktvi 113 (1233)
T KOG1824|consen 41 DDDSERK-VVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVKEDQ--LETIVENLCSNMLSGKEQLRDISSIGLKTVI 113 (1233)
T ss_pred cccchhH-HHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhchHHH--HHHHHHHHhhhhccchhhhccHHHHHHHHHH
Confidence 3455554 458888999976 57777788888888887754321 1112332221 1111111111111111
Q ss_pred HH---cCCchhHHHHHHHHhhcCCCcc--ccCccccc-----hHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHH
Q 000705 275 KK---YADGSLATYLIREIGRTNPKAY--VKDTVGAE-----NIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNA 344 (1342)
Q Consensus 275 ~~---~~~~~l~~~ilrEI~~~~~~~~--~~Dt~g~K-----n~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRna 344 (1342)
-+ +..+.++.-|...|..+-.... ..|..|.| .++..+.+++...|.-=..-+..++++|.+.--.+|.=
T Consensus 114 ~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKk 193 (1233)
T KOG1824|consen 114 ANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKK 193 (1233)
T ss_pred hcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHH
Confidence 11 1122333334433322211110 02444443 46789999999999966677788999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHh
Q 000705 345 LVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAG 423 (1342)
Q Consensus 345 vvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~ 423 (1342)
-+.++|.+.... ..+-+... .+.+++-|--| +.++-+|+ -+|++..+|.+ +.---.+...+..+.+.
T Consensus 194 ai~~l~~la~~~-----~~~ly~~l----i~~Ll~~L~~~--~q~~~~rt-~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~ 261 (1233)
T KOG1824|consen 194 AITALGHLASSC-----NRDLYVEL----IEHLLKGLSNR--TQMSATRT-YIQCLAAICRQAGHRFGSHLDKIVPLVAD 261 (1233)
T ss_pred HHHHHHHHHHhc-----CHHHHHHH----HHHHHhccCCC--CchHHHHH-HHHHHHHHHHHhcchhhcccchhhHHHHH
Confidence 999999986442 11333344 56666666666 66677776 47899999985 21111333455555555
Q ss_pred hc---cCCchhHHHHHHHHHHHHHhhCCC
Q 000705 424 RL---EDKSAIVRKSALNLLVMMLQHNPF 449 (1342)
Q Consensus 424 RL---~DKSs~VRK~AiqLL~~lL~~nPf 449 (1342)
=+ +-----.|-..+|-|..||..+|=
T Consensus 262 y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 262 YCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 55 322346899999999999999884
No 60
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=89.17 E-value=1.3 Score=45.22 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS 408 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~ 408 (1342)
-..++|.|..|+.|.++||..|||+++-.||..+.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999984
No 61
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=35 Score=46.26 Aligned_cols=228 Identities=12% Similarity=0.107 Sum_probs=144.0
Q ss_pred ccccccCCCCcchhHHHH----HHHHHHHHhhccccc-----cchhHHHHHHHHHHHHHhhc---cc--hhhhHHHHHHH
Q 000705 190 NLPLLFGSSDPDENYLSF----VVRNAFLMFENATLL-----KDADTKDALCRIIGACATKY---HY--IEQSCASIMHL 255 (1342)
Q Consensus 190 ~l~~Lw~~~~~ee~Fi~l----~~~~~y~lLE~~~~~-----K~~~~r~~if~il~~~vk~y---~h--~~~~~~~Iiql 255 (1342)
.++.+| .+...|.+. +-+=+|++||.-.-. =...--+.||+.+.-....- -+ ...+-..|+++
T Consensus 651 ~vs~l~---~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 651 QVSKLF---TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred hHHHHH---HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 455555 344445443 556677777643222 01122233444443332221 11 12344566776
Q ss_pred Hh--hcccchHHHHHHHHHHHHHcCCc--hhHHHHHHHHh--hcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhH
Q 000705 256 IH--KYDFVVVHMADAVAGAEKKYADG--SLATYLIREIG--RTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGV 329 (1342)
Q Consensus 256 L~--~~ehl~~~~Ae~l~~l~~~~~~~--~l~~~ilrEI~--~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~ 329 (1342)
+- +++..+.-++|.|..+ ++++.. +-..++|-+|+ +....+ .+|. .+-++..||..+++
T Consensus 728 ~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~-g~e~-~~~~lnefl~~Isa------------ 792 (1176)
T KOG1248|consen 728 LSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDD-GNEP-ASAILNEFLSIISA------------ 792 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcc-cccc-hHHHHHHHHHHHHh------------
Confidence 65 3344456778888777 777653 57788999998 433222 2222 34455666555544
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCc
Q 000705 330 LILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSV 409 (1342)
Q Consensus 330 L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~i 409 (1342)
-|=|++..++++-+-+++.++.+.... +++ .. -..+++.+.-=+---++-+|+.|+-.+..+|-.--.
T Consensus 793 ---gl~gd~~~~~as~Ivai~~il~e~~~~--ld~---~~----l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe 860 (1176)
T KOG1248|consen 793 ---GLVGDSTRVVASDIVAITHILQEFKNI--LDD---ET----LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPE 860 (1176)
T ss_pred ---hhcccHHHHHHHHHHHHHHHHHHHhcc--ccH---HH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCH
Confidence 488999999999777888887554221 212 12 577888888888899999999999999988875333
Q ss_pred ch--hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhC
Q 000705 410 SI--GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHN 447 (1342)
Q Consensus 410 P~--~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~n 447 (1342)
+. .+...++.....=+.|.+..||++.-+||.+|+..-
T Consensus 861 ~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 861 ECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 22 344468888888899999999999999999999953
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.44 E-value=12 Score=48.57 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.+..+...|.-+||.+ .|++.|-.-+|..-++|. .++|.||--++.|+--+..+=|++++-+.+..-..|+|.+..|
T Consensus 119 ~nq~vVglAL~alg~i--~s~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 119 SNQYVVGLALCALGNI--CSPEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred CCeeehHHHHHHhhcc--CCHHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCce
Confidence 3456777788888865 489999999999999995 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 000705 1030 RKNAVLVLSHLILN 1043 (1342)
Q Consensus 1030 R~~~l~vlthLIl~ 1043 (1342)
=-+++..++.++..
T Consensus 196 L~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 196 LIAGLHLITELCKI 209 (866)
T ss_pred eeeHHHHHHHHHhc
Confidence 99999999999877
No 63
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.20 E-value=5.8 Score=50.82 Aligned_cols=252 Identities=16% Similarity=0.178 Sum_probs=161.0
Q ss_pred hhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHh---------
Q 000705 930 LIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIAL--------- 1000 (1342)
Q Consensus 930 LL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~l--------- 1000 (1342)
||..+.|.|...--+ +++.+|+-|++|+.-.-.++...-.+--.++-..|.+-.+|..+-|+.+.|
T Consensus 131 Llepl~p~IracleH-----rhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEH-----RHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred HhhhhHHHHHHHHhC-----cchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHH
Confidence 445578877764444 677899999999987777655444444445555666666666666655543
Q ss_pred -------------------------hhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHH
Q 000705 1001 -------------------------GDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEM 1055 (1342)
Q Consensus 1001 -------------------------gDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~ 1055 (1342)
-+-|.+-|+.=-.|..-+|..|.-.++.|+.-|-+.|..|- ++=--+|.--..+
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~ 284 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTY 284 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHH
Confidence 34455557777788999999999999999988877776553 3333344444455
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 000705 1056 AIRVEDE-DQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRF 1134 (1342)
Q Consensus 1056 a~~l~D~-d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf 1134 (1342)
..|++++ |-++.-+.---..+|...+-..+--+.-|++..|+.+++ +-.+..+.+.++.+. .+..+.+|.=|-.+|
T Consensus 285 i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dl--dvr~Ktldi~ldLvs-srNvediv~~Lkke~ 361 (948)
T KOG1058|consen 285 IDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDL--DVRSKTLDIALDLVS-SRNVEDIVQFLKKEV 361 (948)
T ss_pred HHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccc--cHHHHHHHHHHhhhh-hccHHHHHHHHHHHH
Confidence 5555543 333444444445566655534566667788888886643 344567777778774 678899999999999
Q ss_pred hcccch--------hh--HHHHHHHHhccCC-ChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHhh
Q 000705 1135 SGVTDI--------RQ--WEYISYCLSQLAF-TEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSK 1191 (1342)
Q Consensus 1135 ~~~~~~--------rq--wrdiafcLslL~~-~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~k 1191 (1342)
.++.++ || -+-|.+|=..+|- .+..+.-|+|.+.....+-.. .|...-+++++|.-
T Consensus 362 ~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas-~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 362 MKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAAS-DVLMFVREAIEKFP 428 (948)
T ss_pred HhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHHHHhCc
Confidence 988655 22 3457788887775 556666666655544443322 34445556666543
No 64
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=87.34 E-value=2.3 Score=41.40 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=61.3
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHccc---cccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHH
Q 000705 1016 ENMYARLKDPSMAVRKNAVLVLSHLILNDM---MKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDI 1092 (1342)
Q Consensus 1016 ~~ly~~L~D~~~~VR~~~l~vlthLIl~dm---iKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdi 1092 (1342)
.....-|+||.+-||-.+|..|++||...= +.+.+-+.-+...|.|+|+=|==-|-.-+..|+...|+.+...+.+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 345667899999999999999999999876 55555555667789999988888888888888888877775555554
Q ss_pred H
Q 000705 1093 L 1093 (1342)
Q Consensus 1093 i 1093 (1342)
.
T Consensus 86 y 86 (92)
T PF10363_consen 86 Y 86 (92)
T ss_pred H
Confidence 3
No 65
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=87.03 E-value=29 Score=42.90 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=58.7
Q ss_pred HHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCccc-----------ccchHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000705 974 DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLL-----------EPWTENMYARLKDPSMAVRKNAVLVLSHLIL 1042 (1342)
Q Consensus 974 ~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlv-----------ep~t~~ly~~L~D~~~~VR~~~l~vlthLIl 1042 (1342)
.....+|+++|.+...+.+.-++++-+.||+---|+.+ +||.+++ ..|+.+|..+...|..+||-|+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 45567777788888888888888888888887766533 4665555 48888899999999999999998
Q ss_pred ccccccch
Q 000705 1043 NDMMKVKG 1050 (1342)
Q Consensus 1043 ~dmiKvKg 1050 (1342)
.+-.+..|
T Consensus 131 ~~~~~~~~ 138 (429)
T cd00256 131 FGLAKMEG 138 (429)
T ss_pred cCccccch
Confidence 77655555
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=86.97 E-value=6.1 Score=45.44 Aligned_cols=124 Identities=24% Similarity=0.372 Sum_probs=93.0
Q ss_pred HHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHhhhcCCCCHHHHHHHHHHHHHHHHc--ccc
Q 000705 974 DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMYARLKDPSMAVRKNAVLVLSHLILN--DMM 1046 (1342)
Q Consensus 974 ~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~-----t~~ly~~L~D~~~~VR~~~l~vlthLIl~--dmi 1046 (1342)
.++++-|+.+|+.+.+|.|+.=+.+++|=.+. ||--=+-+ ++-+-..|.|+++.||..|+..|.+|-.+ .+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 36778899999999999999999999998644 66443433 56778899999999999999999998654 355
Q ss_pred ccchhHHHHHHHhcC-C-ChhHHHHHHHHHHHHhccC--CchhhhhhhHHHhhccC
Q 000705 1047 KVKGYINEMAIRVED-E-DQRISNLAKLFFHELSKKG--NNPIYNLLPDILGKLCN 1098 (1342)
Q Consensus 1047 KvKg~l~~~a~~l~D-~-d~~I~~~a~~ff~eL~~K~--~n~iyn~~pdiis~Ls~ 1098 (1342)
++|..+..+..-+.. + |..++--+-.....|+..+ .+.+.+.+|+++.-|+.
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~ 145 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSS 145 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHc
Confidence 566677666663333 2 5666655555677776653 37799999998877754
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=86.68 E-value=1.9 Score=37.13 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHH----HhHHHHHHHHhcCCChhhHhhHHHHhhhh
Q 000705 952 PELQASAMLALCRFMIIDADYCD----ANLQLLFTVVESSPSEIVRSNCTIALGDL 1003 (1342)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~----~~l~llf~~le~s~~~~vR~N~vi~lgDL 1003 (1342)
|.+|.+|..+||.+.-...+..+ +-+|.|+..| +.+++.||.++.-+||-|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 57899999999986655555544 5567777777 556669999999999864
No 68
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.31 E-value=5.1 Score=50.76 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhcc---Ccccccc-------hHHHhhhcCCCC
Q 000705 957 SAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRF---PNLLEPW-------TENMYARLKDPS 1026 (1342)
Q Consensus 957 ~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rf---pnlvep~-------t~~ly~~L~D~~ 1026 (1342)
+-.+-|-|+--+|+..|-+.+..+.+.| .|.+-..||-++=++|.+..-| |..+|.| ..-+-.||.|.+
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LL-dses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELL-DSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 5567889999999999999999999999 6666779998888888776543 3344544 556678999999
Q ss_pred HHHHHHHHHHHHHHHHcc--ccccchhH-HHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 000705 1027 MAVRKNAVLVLSHLILND--MMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKGN 1082 (1342)
Q Consensus 1027 ~~VR~~~l~vlthLIl~d--miKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~ 1082 (1342)
|.+|..+|.|+.-+---. +++-|-.+ ....+||.|...-+|.-|-..|..|..++|
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 999999999999987554 44445555 467789999999999999999999999977
No 69
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=1.4e+02 Score=40.21 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=101.9
Q ss_pred Cccccc-hHHHHHHHHHhhh-hhHHHhhHhHHHHHhC------CCc--hhHHHHHHHHHHHHHHHHhcCcccccchhhhh
Q 000705 301 DTVGAE-NIGRFLVELADRL-PKLISTNIGVLILHFG------GES--YKIRNALVGVLGKLVAKAFKDIEGEASSKSVR 370 (1342)
Q Consensus 301 Dt~g~K-n~s~FL~~Lae~~-P~lvl~~is~L~~~Ld------~es--Y~lRnavvevig~ii~~~l~~~~~~~~~k~~~ 370 (1342)
|-..|+ +-..|+..++.+- +...-+-|+.+.+.|. .+. |----+-+-++|.+. +.+...+. .
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~---~---- 455 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSP---Y---- 455 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCc---h----
Confidence 444444 4556777887777 7777788888888877 232 333345677788876 44333221 1
Q ss_pred hhhHHHHHHHHHHHcC----CCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHh
Q 000705 371 LRTKQAMLEILLERCR----DVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLE-DKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 371 ~~~rd~lld~L~eR~~----D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~-DKSs~VRK~AiqLL~~lL~ 445 (1342)
++.+=..|..|+. +-..|-|+||.=++...++.+---..-..+.++.+..-|. |+.--||=-|.-=|..|+.
T Consensus 456 ---~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 456 ---KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred ---HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 4556666677765 8899999999999999997654333566799999999998 9999999999999999999
Q ss_pred hCCCCC
Q 000705 446 HNPFGP 451 (1342)
Q Consensus 446 ~nPfg~ 451 (1342)
++++..
T Consensus 533 ~~~~~~ 538 (1010)
T KOG1991|consen 533 NQEQAD 538 (1010)
T ss_pred cchhhh
Confidence 988763
No 70
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=1.7 Score=54.65 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=18.2
Q ss_pred ccccchHHHhhhcCCCCHHHHHHHHHHHH
Q 000705 1010 LLEPWTENMYARLKDPSMAVRKNAVLVLS 1038 (1342)
Q Consensus 1010 lvep~t~~ly~~L~D~~~~VR~~~l~vlt 1038 (1342)
+=|.+.+.+-.+|.|.++.||.....+|-
T Consensus 443 i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 443 IREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred ecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34566666777777777777766554443
No 71
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.03 E-value=94 Score=38.23 Aligned_cols=76 Identities=25% Similarity=0.237 Sum_probs=60.1
Q ss_pred hhhHHHHHHH----HHHHcCCCCchhhHHHHHHHHHHHhcCCcch----hhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000705 371 LRTKQAMLEI----LLERCRDVSAYTRSRVLQVWAELCEEHSVSI----GLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1342)
Q Consensus 371 ~~~rd~lld~----L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~----~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1342)
.-.|++||.. |.+.+.+.+.-.|..-|..|..|+.+ +|. .....++.+.+..|.=.+..||.++++.|..
T Consensus 314 lLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~--vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~ 391 (415)
T PF12460_consen 314 LLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKN--VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKM 391 (415)
T ss_pred hHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3346666654 66777777777899999999999984 454 4456899999999987777899999999999
Q ss_pred HHhhCC
Q 000705 443 MLQHNP 448 (1342)
Q Consensus 443 lL~~nP 448 (1342)
++..+|
T Consensus 392 ~l~~~~ 397 (415)
T PF12460_consen 392 ILEEAP 397 (415)
T ss_pred HHHcCH
Confidence 999885
No 72
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.40 E-value=1.8e+02 Score=39.86 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHH
Q 000705 176 RGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHL 255 (1342)
Q Consensus 176 r~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~Iiql 255 (1342)
-..+++.+..++...-.. - -.+++-+...+..+..|.+ .+.++|..+..+|..+++. +. .....
T Consensus 223 a~~~l~~l~El~e~~pk~------l-~~~l~~ii~~~l~Ia~n~~--l~~~~R~~ALe~ivs~~e~---Ap----~~~k~ 286 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKL------L-RPHLSQIIQFSLEIAKNKE--LENSIRHLALEFLVSLSEY---AP----AMCKK 286 (1075)
T ss_pred HHHHHHHHHHHHhhchHH------H-HHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHh---hH----HHhhh
Confidence 456677777766654211 1 2344555566777766665 5678888888888777765 11 11111
Q ss_pred HhhcccchHHHHH-HHHHHHHHcCCchhHHHHHHHHhhcCCCccccC-ccccchHHHHHHHHHhhhh-hHHHh-hHhHHH
Q 000705 256 IHKYDFVVVHMAD-AVAGAEKKYADGSLATYLIREIGRTNPKAYVKD-TVGAENIGRFLVELADRLP-KLIST-NIGVLI 331 (1342)
Q Consensus 256 L~~~ehl~~~~Ae-~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D-t~g~Kn~s~FL~~Lae~~P-~lvl~-~is~L~ 331 (1342)
.. -+..++.. ++..+.+.-++ .|-.+-+-.| ..| .+..+.--.-|-.||-..| +.|++ -+..+-
T Consensus 287 ~~---~~~~~lv~~~l~~mte~~~D--------~ew~~~d~~d-ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 287 LA---LLGHTLVPVLLAMMTEEEDD--------DEWSNEDDLD-EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred ch---hhhccHHHHHHHhcCCcccc--------hhhccccccc-cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 11 11112222 22222222222 1111111111 123 2233333456677776666 66664 456677
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCc
Q 000705 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSV 409 (1342)
Q Consensus 332 ~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~--~~i 409 (1342)
.+|-++....|.|.+-+++-+. ++..+..+.. .+.++++.+-=+.|-+|=||..|+.++..+-.. .-+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~------EGc~~~m~~~----l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIA------EGCSDVMIGN----LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH------cccHHHHHHH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 7799999999999999999885 3333444444 899999999999999999999999999988874 334
Q ss_pred chhhHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHhhCCC
Q 000705 410 SIGLWNEVAEVAAGRLEDKS-AIVRKSALNLLVMMLQHNPF 449 (1342)
Q Consensus 410 P~~~~~~v~~~av~RL~DKS-s~VRK~AiqLL~~lL~~nPf 449 (1342)
-..+...+....+.-+.|-- +-|-..|-.-|-.+.+.+|.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 43343444445555555533 35667777777778887774
No 73
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.59 E-value=56 Score=41.75 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChh---hHhhHHHHhhhhhhccCcccccchHHHhhhcC---
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEI---VRSNCTIALGDLAVRFPNLLEPWTENMYARLK--- 1023 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~---vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~--- 1023 (1342)
.|..+|..|+-.|..+|--+.+++.+....|..+|. +.++. +=.|.++.+=++-. . --...||..+.
T Consensus 71 ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d~---k---~tL~~lf~~i~~~~ 143 (556)
T PF05918_consen 71 EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQDP---K---GTLTGLFSQIESSK 143 (556)
T ss_dssp SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH-H---H---HHHHHHHHHHH---
T ss_pred ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcCc---H---HHHHHHHHHHHhcc
Confidence 466788999999988877778899999999999994 66654 44555555544322 1 11355666665
Q ss_pred CCCHHHHHHHHHHH-HHHH
Q 000705 1024 DPSMAVRKNAVLVL-SHLI 1041 (1342)
Q Consensus 1024 D~~~~VR~~~l~vl-thLI 1041 (1342)
..+..||..+|..| .+|+
T Consensus 144 ~~de~~Re~~lkFl~~kl~ 162 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLK 162 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGG
T ss_pred cCchHHHHHHHHHHHHHHh
Confidence 56778999988655 4544
No 74
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=1.6e+02 Score=38.59 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=121.5
Q ss_pred cCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 000705 277 YADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKA 356 (1342)
Q Consensus 277 ~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~ 356 (1342)
.|...|..++++-.+- +|-.--|=+-.+|..-|..-|..-+-.+..++.-...++-.+|.+-+..+|.+=+.
T Consensus 45 ~DvSslF~dvvk~~~T-------~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~- 116 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQT-------RDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD- 116 (734)
T ss_pred cchHhhhHHHHhhccc-------CCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-
Confidence 4555666666664421 34445577888999999999999999999999999999999999999988876211
Q ss_pred hcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcC---CcchhhHHHHHHHHHhhccCCchhHH
Q 000705 357 FKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEH---SVSIGLWNEVAEVAAGRLEDKSAIVR 433 (1342)
Q Consensus 357 l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~---~iP~~~~~~v~~~av~RL~DKSs~VR 433 (1342)
.. ...+++-|.....|.+||||..|-=...++-.-+ +.+. ++...-..=+.|-++.|-
T Consensus 117 -----------~i----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~----gl~~~L~~ll~D~~p~VV 177 (734)
T KOG1061|consen 117 -----------KI----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS----GLVDALKDLLSDSNPMVV 177 (734)
T ss_pred -----------HH----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc----chhHHHHHHhcCCCchHH
Confidence 12 4678999999999999999999998888887643 2232 444455555569999999
Q ss_pred HHHHHHHHHHHhhCC--CCCCCChhHHHHHHH
Q 000705 434 KSALNLLVMMLQHNP--FGPQLRIASFEATLD 463 (1342)
Q Consensus 434 K~AiqLL~~lL~~nP--fg~~L~~~~~~~~Le 463 (1342)
=||+..|..+.+.|| ....|+......-++
T Consensus 178 AnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~ 209 (734)
T KOG1061|consen 178 ANALAALSEIHESHPSVNLLELNPQLINKLLE 209 (734)
T ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Confidence 999999999999998 556666655444333
No 75
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=82.34 E-value=8.5 Score=48.34 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc----hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW----TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI 1052 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~----t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l 1052 (1342)
+|.|+.-. ..|...|.+-++-++|=|--+--+.--.| ||.+-..|.|.|+.-|.++..|++||.|| ----|..
T Consensus 802 lP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln--c~gtg~e 878 (975)
T COG5181 802 LPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN--CPGTGDE 878 (975)
T ss_pred HHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC--CCCcccH
Confidence 46555555 55677788888888775544433332223 66667789999999999999999999999 2222333
Q ss_pred H---HHHH----HhcCCChhHHHHHHHHHHHHhcc-CCchhhhhhhHHHhhcc
Q 000705 1053 N---EMAI----RVEDEDQRISNLAKLFFHELSKK-GNNPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1053 ~---~~a~----~l~D~d~~I~~~a~~ff~eL~~K-~~n~iyn~~pdiis~Ls 1097 (1342)
- ++.- -+.||.|.+.+--.-...-+++- ++.++|+.+-.-++|=|
T Consensus 879 da~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFHPs 931 (975)
T COG5181 879 DAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFHPS 931 (975)
T ss_pred HHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccCch
Confidence 1 1111 24577777766655556556664 66788888877777654
No 76
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.35 E-value=12 Score=36.92 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHH
Q 000705 341 IRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVA 418 (1342)
Q Consensus 341 lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~--~~iP~~~~~~v~ 418 (1342)
-|++-+-.++.+-+..-+. .... .+.++..++.=+.|.++=||.-|.+.+..|+.. +.+ +.+++++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~------~~~~----l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF 70 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD------ISKY----LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIF 70 (97)
T ss_pred chhHHHHHHHHHHHHchHh------HHHH----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3666666666664433221 2223 789999999999999999999999999999983 333 34789999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHH
Q 000705 419 EVAAGRLEDKSAIVRKSALNLLVMML 444 (1342)
Q Consensus 419 ~~av~RL~DKSs~VRK~AiqLL~~lL 444 (1342)
......+.|....||..| .+|..+|
T Consensus 71 ~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 71 DALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 999999999999999888 6666655
No 77
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.06 E-value=13 Score=46.61 Aligned_cols=70 Identities=26% Similarity=0.274 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1342)
.+++|-.++.-+--.---||.+++|++..+.+. +-|--..++.+..-...|+-|+-+.||+.|+..|+.+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 567777777555555668999999999999985 6666788899999999999999999999999999886
No 78
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=79.91 E-value=2.4 Score=32.60 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000705 1016 ENMYARLKDPSMAVRKNAVLVLSHLI 1041 (1342)
Q Consensus 1016 ~~ly~~L~D~~~~VR~~~l~vlthLI 1041 (1342)
|.+..+|+|+++.||.+|+.-|..+.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56677788888888888877776654
No 79
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=79.70 E-value=6.4 Score=39.35 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=66.7
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH--HHHHh----------cCC
Q 000705 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE--MAIRV----------EDE 1062 (1342)
Q Consensus 995 N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~--~a~~l----------~D~ 1062 (1342)
-.+.-++|++..+|.-...-...|..+|.++++.|..-||.+|=+|+.|+==++..++.. +..-+ .|.
T Consensus 19 ~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~ 98 (115)
T cd00197 19 PLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDV 98 (115)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCC
Confidence 457778999988888878889999999999999999999999999999997777766632 11111 255
Q ss_pred ChhHHHHHHHHHHHHh
Q 000705 1063 DQRISNLAKLFFHELS 1078 (1342)
Q Consensus 1063 d~~I~~~a~~ff~eL~ 1078 (1342)
+..|++-++.++..++
T Consensus 99 ~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 99 STNVREKAIELVQLWA 114 (115)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 7888888888777654
No 80
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=79.32 E-value=27 Score=46.11 Aligned_cols=167 Identities=16% Similarity=0.053 Sum_probs=117.9
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhh--hHHHhhHhHHHHHhCCCchhHHHHH
Q 000705 268 DAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLP--KLISTNIGVLILHFGGESYKIRNAL 345 (1342)
Q Consensus 268 e~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P--~lvl~~is~L~~~Ld~esY~lRnav 345 (1342)
+.+..+..+.+ ..++.+-+.+++...-.+ +.....+.++.++.++++..- -.+..-+..++......+|..|.++
T Consensus 501 ~~ip~la~q~~-~~~~~~~~~~l~~~~l~d--~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~ 577 (759)
T KOG0211|consen 501 EYIPQLALQLG-VEFFDEKLAELLRTWLPD--HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTT 577 (759)
T ss_pred HHHHHHHHhhh-hHHhhHHHHHHHHhhhhh--hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHH
Confidence 34444444444 345555566666654333 555667777777777777655 4444545555666556699999999
Q ss_pred HHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc
Q 000705 346 VGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL 425 (1342)
Q Consensus 346 vevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL 425 (1342)
+-++..+ ..++..+ -. ...|+..+..=..|-.|.||-.|+..+.++..-=..|. +...|..+...=.
T Consensus 578 l~si~~l-a~v~g~e-------i~----~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~-~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 578 LFSIHEL-AEVLGQE-------IT----CEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV-RDEEVLPLLETLS 644 (759)
T ss_pred HHHHHHH-HHHhccH-------HH----HHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH-HHHHHHHHHHHhc
Confidence 9999955 4554432 12 78899999999999999999999999999988655564 5567777777777
Q ss_pred cCCchhHHHHHHHHHHHHHhhCCCC
Q 000705 426 EDKSAIVRKSALNLLVMMLQHNPFG 450 (1342)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL~~nPfg 450 (1342)
.|-...||=.|++-++.+...--|.
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHHHhh
Confidence 7999999999999887776654443
No 81
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.08 E-value=2.3e+02 Score=37.55 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=107.1
Q ss_pred HHHHHHHhhcCHHHHHHhHHHHHHHHh---cCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHH
Q 000705 959 MLALCRFMIIDADYCDANLQLLFTVVE---SSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVL 1035 (1342)
Q Consensus 959 ~l~L~K~m~vs~~~c~~~l~llf~~le---~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~ 1035 (1342)
.+++-|+=.+|.-.-+.|++.+++.++ ++++-.+-+-.|-++|+-+.|--.+-+-....|-..|+..+..|=-.+++
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHH
Confidence 456778888888889999999998885 46666788999999999999988888888888999999999999999999
Q ss_pred HHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHH----HHHHHhccCCchhhhhhhHHHhhcc
Q 000705 1036 VLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKL----FFHELSKKGNNPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1036 vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~----ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1342)
|+--||.++=-+---.|.+||+++ |--....||. .|.|.... +.-..||++-.+.
T Consensus 452 vIk~Llq~~p~~h~~ii~~La~ll---dti~vp~ARA~IiWLige~~e~----vpri~PDVLR~la 510 (968)
T KOG1060|consen 452 VIKRLLQKDPAEHLEILFQLARLL---DTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLA 510 (968)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHh---hhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHH
Confidence 999999998777666679999999 4445667776 44555544 5566788777764
No 82
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.02 E-value=15 Score=36.10 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=65.8
Q ss_pred hHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC
Q 000705 307 NIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR 386 (1342)
Q Consensus 307 n~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~ 386 (1342)
.++..-+.|.+..+..+-.-+..++..++.+...+|=+..|++.+|. +...++- +..-+.+|+.|...+.
T Consensus 9 ~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~-k~~~~~~---------l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS-KVARGEI---------LPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHHHHc
Confidence 44445555555566666666777888899999999999999999996 4444322 2237899999999999
Q ss_pred CCCchhhHHHHHHHHHHH
Q 000705 387 DVSAYTRSRVLQVWAELC 404 (1342)
Q Consensus 387 D~nayVRskvLQ~~~~L~ 404 (1342)
|..+-||+.| ..+-+|.
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999999998 5555554
No 83
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.98 E-value=35 Score=44.28 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=108.1
Q ss_pred hhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHH-HhCCCchhHHHHHHHHHHHHHHHHhcC
Q 000705 281 SLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLIL-HFGGESYKIRNALVGVLGKLVAKAFKD 359 (1342)
Q Consensus 281 ~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~-~Ld~esY~lRnavvevig~ii~~~l~~ 359 (1342)
.++..||.-+.+-++++..-|=++.|+-+.=|.=+|+.+-.-|++++=-++. ++.+++..=|-+-+=++|-+...
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g---- 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEG---- 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC----
Confidence 4666777777777777766677889999999999999999998887655555 79999999999999999988632
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc---CCcchhhHHHHHHHHHhhccCC
Q 000705 360 IEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE---HSVSIGLWNEVAEVAAGRLEDK 428 (1342)
Q Consensus 360 ~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~---~~iP~~~~~~v~~~av~RL~DK 428 (1342)
.+ ...... --.+-+.-++.=..|.+-+||..+=.++.++++. .++|-.+.+.++...+.-|.|-
T Consensus 395 p~--~~~Lt~---iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 395 PE--PDKLTP---IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred Cc--hhhhhH---HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC
Confidence 21 111111 1455666677777799999999999999999994 6788888888888888888883
No 84
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=78.35 E-value=81 Score=41.04 Aligned_cols=227 Identities=16% Similarity=0.278 Sum_probs=136.3
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhh------cCHHHHHHhHHHHHHHHhcC-CChhhHhhHHHHhhhhhhcc
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMI------IDADYCDANLQLLFTVVESS-PSEIVRSNCTIALGDLAVRF 1007 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~------vs~~~c~~~l~llf~~le~s-~~~~vR~N~vi~lgDL~~rf 1007 (1342)
.|+|..+.-+-. ..++..|.-++-+..|.|- +++..-+.-+.-+...+... ....| ++.++|=.+..+
T Consensus 715 ~~~v~R~v~~lk--de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~v---ml~gfg~V~~~l 789 (1172)
T KOG0213|consen 715 DPIVSRVVLDLK--DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSV---MLLGFGTVVNAL 789 (1172)
T ss_pred hHHHHHHhhhhc--cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhh---hhhhHHHHHHHH
Confidence 455555544422 1356667777777777664 56777777777666666433 33333 455677777777
Q ss_pred CcccccchHHHhh----hcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 000705 1008 PNLLEPWTENMYA----RLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNN 1083 (1342)
Q Consensus 1008 pnlvep~t~~ly~----~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n 1083 (1342)
-.=+.||++.|-+ +|+.+++.||.++.-+++.|.- .+|.+|.--.|+.| .-.++.-|-.-.|.
T Consensus 790 g~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~--Vlktc~ee~~m~~l-----------GvvLyEylgeeypE 856 (1172)
T KOG0213|consen 790 GGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAK--VLKTCGEEKLMGHL-----------GVVLYEYLGEEYPE 856 (1172)
T ss_pred hhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH--HHHhccHHHHHHHh-----------hHHHHHhcCcccHH
Confidence 7778899887654 8999999999999999988753 45555433333332 11111112111111
Q ss_pred hhhhhhhHHHhhccCC--CCChhHH----HHHHHHHHhhhhhhhh------HHHHHHHHHhhhhcccchhhHHHHHHHH-
Q 000705 1084 PIYNLLPDILGKLCNQ--NLKTESF----CNIMQLLIGFIKKDKQ------MEALVEKLCNRFSGVTDIRQWEYISYCL- 1150 (1342)
Q Consensus 1084 ~iyn~~pdiis~Ls~~--~~~~~~f----~~I~~fLl~~i~KdKq------~e~LveKLc~Rf~~~~~~rqwrdiafcL- 1150 (1342)
. ||-|+..+..- .+...+. +.|+--|.+-+ |.|| +-.||.++|.|=+.--..|+|=-|.|-|
T Consensus 857 v----LgsILgAikaI~nvigm~km~pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLl 931 (1172)
T KOG0213|consen 857 V----LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELL 931 (1172)
T ss_pred H----HHHHHHHHHHHHHhccccccCCChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1 11111111100 0000111 12222233333 4444 4468899999988888999999999976
Q ss_pred hccCCChhHHHHH-HHhHHHHHHhhCchHHHHHHH
Q 000705 1151 SQLAFTEKGMKKL-IESFKTYEHALSEDSVMDNFR 1184 (1342)
Q Consensus 1151 slL~~~ek~ikKL-~e~~~~y~dkL~d~~V~~~F~ 1184 (1342)
-+|.-..|+|++- .+.|.+....++-.+|...+.
T Consensus 932 elLkahkK~iRRaa~nTfG~IakaIGPqdVLatLl 966 (1172)
T KOG0213|consen 932 ELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLL 966 (1172)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHH
Confidence 4555588888875 478999999998888877654
No 85
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.19 E-value=20 Score=45.09 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHh
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMY 1019 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~-----t~~ly 1019 (1342)
.+|.+|--|.-+|....+-+++--+- -+|+|+..| .|+++.||.=+|-|||+++-.=|.+=|-- .+.+-
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL 200 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence 56999999999999999988877553 368888877 89999999999999999986554422111 23345
Q ss_pred hhcCCCCH-HHHHHHHHHHHHHHHcc-----ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhh
Q 000705 1020 ARLKDPSM-AVRKNAVLVLSHLILND-----MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNL 1088 (1342)
Q Consensus 1020 ~~L~D~~~-~VR~~~l~vlthLIl~d-----miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~ 1088 (1342)
..|..+++ ...||+.-+|+.|--+. |-+++.-+.-+.++|-..|+.|...|--=...|+.- +|-.++.
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~ 274 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQM 274 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHH
Confidence 55555554 78889999999999876 588888888899999999999998877766666543 3554443
No 86
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=78.10 E-value=3.3 Score=53.93 Aligned_cols=145 Identities=19% Similarity=0.241 Sum_probs=108.9
Q ss_pred hhhHhhHHHHhhhhhhccCcccccchHHHhhhcCC-CCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHH
Q 000705 990 EIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKD-PSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISN 1068 (1342)
Q Consensus 990 ~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D-~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~ 1068 (1342)
+.||+-.+|-||-||..|-.|.-.|.|.+-+-|.- .+..||-|-+.+++.+-..=-+++--.|--+++||.||++-||.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 57999999999999999999999999999998864 45788999998888888777777888888999999999999999
Q ss_pred HHHHHHHHHhccCCchhhh--hhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhh----HHHHHHHH-----Hhhhhcc
Q 000705 1069 LAKLFFHELSKKGNNPIYN--LLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQ----MEALVEKL-----CNRFSGV 1137 (1342)
Q Consensus 1069 ~a~~ff~eL~~K~~n~iyn--~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~KdKq----~e~LveKL-----c~Rf~~~ 1137 (1342)
-+-..+..|.+.+ =-=|| +|.-+++.|-| +.++.++.-+|+++.|=+-|- --+.||-+ |.|..+.
T Consensus 1025 qt~ilL~rLLq~~-~vKw~G~Lf~Rf~l~l~D---~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~ 1100 (1529)
T KOG0413|consen 1025 QTIILLARLLQFG-IVKWNGELFIRFMLALLD---ANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGV 1100 (1529)
T ss_pred HHHHHHHHHHhhh-hhhcchhhHHHHHHHHcc---cCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCC
Confidence 8888887777764 11122 34555555544 337788888888888754332 23444443 5555555
Q ss_pred c
Q 000705 1138 T 1138 (1342)
Q Consensus 1138 ~ 1138 (1342)
.
T Consensus 1101 ~ 1101 (1529)
T KOG0413|consen 1101 G 1101 (1529)
T ss_pred C
Confidence 3
No 87
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.43 E-value=3.6 Score=41.99 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhh---hhccCcccccc-----hHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDL---AVRFPNLLEPW-----TENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL---~~rfpnlvep~-----t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1342)
+..|+.+|++|.+|.+ +.||+.|+ +..||+-..-. -..++..|.++|+.||+.||..+.-|+.+.
T Consensus 45 lk~L~~lL~~s~d~~~---laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTT---LAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHH-SHHHHHH---HHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCCCcce---eehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 5778888888877754 55666665 56778754332 467889999999999999999999988764
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=76.87 E-value=1.3e+02 Score=35.37 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=44.2
Q ss_pred HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH
Q 000705 975 ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054 (1342)
Q Consensus 975 ~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~ 1054 (1342)
...+.++..+ .++++.+|..+...+|++.- +.-.+.+...|.|+++.||.+++..|..+ +..--+-.
T Consensus 43 ~~~~~~~~~l-~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~------~~~~a~~~ 109 (335)
T COG1413 43 EAADELLKLL-EDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGEL------GDPEAVPP 109 (335)
T ss_pred hhHHHHHHHH-cCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc------CChhHHHH
Confidence 3444444555 22355555555555555543 33345555555555555555555533322 22222233
Q ss_pred HHHHhc-CCChhHHHHHHHHHHHHhcc
Q 000705 1055 MAIRVE-DEDQRISNLAKLFFHELSKK 1080 (1342)
Q Consensus 1055 ~a~~l~-D~d~~I~~~a~~ff~eL~~K 1080 (1342)
+..+|. |+|..+|.-|-..+..+..+
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 444444 45555555555555444333
No 89
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=76.77 E-value=1.2e+02 Score=40.39 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=160.9
Q ss_pred CchhhhhhHHHHHHhcC-CcCCCCChHHHHHHHHHHHHHhhcCHHHHHHh----HHHHHHHHhc-CCChhhH---hhHHH
Q 000705 928 KNLIGHCASFLSKFCRN-FSLMNKYPELQASAMLALCRFMIIDADYCDAN----LQLLFTVVES-SPSEIVR---SNCTI 998 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~-~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~----l~llf~~le~-s~~~~vR---~N~vi 998 (1342)
..++..|-|.|.++-.. ... .....-..-+-+||-.+.++.+|...+ +|+++.+.-+ +.+|.|= --++-
T Consensus 521 ~~vl~~~~p~ild~L~qlas~--~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~ 598 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASK--SSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFE 598 (1005)
T ss_pred ceeccccchHHHHHHHHHccc--ccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 67888889988887654 222 245666788999999999999998654 7999888754 5667443 34566
Q ss_pred HhhhhhhccCcccccchHHHhhhcCCCC----HHHHHHHHHHHHHHHHccccccc-h---hHH-HHHHHhcCCC-hhHHH
Q 000705 999 ALGDLAVRFPNLLEPWTENMYARLKDPS----MAVRKNAVLVLSHLILNDMMKVK-G---YIN-EMAIRVEDED-QRISN 1068 (1342)
Q Consensus 999 ~lgDL~~rfpnlvep~t~~ly~~L~D~~----~~VR~~~l~vlthLIl~dmiKvK-g---~l~-~~a~~l~D~d-~~I~~ 1068 (1342)
.+.+-+.+|-+..+...|.+-.-|.-++ +..--.++-+||-++.+.==-.- + +.+ -+++|+.-.| -..-.
T Consensus 599 el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ 678 (1005)
T KOG2274|consen 599 ELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ 678 (1005)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH
Confidence 7888889999999999999999998887 88888999999988876432222 2 221 2667664332 33344
Q ss_pred HHHHHHHHHhcc--------CCchh--hhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhh-----hhhHHHHHHHHHhh
Q 000705 1069 LAKLFFHELSKK--------GNNPI--YNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKK-----DKQMEALVEKLCNR 1133 (1342)
Q Consensus 1069 ~a~~ff~eL~~K--------~~n~i--yn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~K-----dKq~e~LveKLc~R 1133 (1342)
.|.-+|.-+-.+ ...+= +..+=+.+++|-||..++-.=..+=+.++..|.| .-+.++|..-...|
T Consensus 679 ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 679 NATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISR 758 (1005)
T ss_pred hHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 555555543333 11111 3466677888888866655545666666666664 34567888999999
Q ss_pred hhcccchhhHHHHHHHHhccCCCh
Q 000705 1134 FSGVTDIRQWEYISYCLSQLAFTE 1157 (1342)
Q Consensus 1134 f~~~~~~rqwrdiafcLslL~~~e 1157 (1342)
+..+++.+--.++.+.+..|.+++
T Consensus 759 mq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 759 LQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhCC
Confidence 999999999999999988888754
No 90
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=76.15 E-value=2.4 Score=35.23 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=29.2
Q ss_pred hhhhhhccCcccc--cchHHHhhhcCCCCHHHHHHHHHHH
Q 000705 1000 LGDLAVRFPNLLE--PWTENMYARLKDPSMAVRKNAVLVL 1037 (1342)
Q Consensus 1000 lgDL~~rfpnlve--p~t~~ly~~L~D~~~~VR~~~l~vl 1037 (1342)
++=+.-..|++++ .-...+-.+|.|+++.||+.|+-+|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3445556677776 5578889999999999999998653
No 91
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=75.57 E-value=9.4 Score=41.76 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
.+.|++.+++-+.+.++-||..|++++.-+..+|-++.. ..+...+.=.-|..+.||+.|.++++.+-++||
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---QCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 578999999999999999999999999999999977543 344555555678999999999999999999887
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=74.11 E-value=96 Score=36.50 Aligned_cols=78 Identities=29% Similarity=0.331 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHH
Q 000705 339 YKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 418 (1342)
Q Consensus 339 Y~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~ 418 (1342)
+.+|.++++.+|.+- -......|.+++.|-..+||.++...+..+...+ ..+.
T Consensus 163 ~~~r~~a~~~l~~~~--------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~ 215 (335)
T COG1413 163 LDVRAAAAEALGELG--------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAA 215 (335)
T ss_pred HHHHHHHHHHHHHcC--------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHH
Confidence 367888888777762 1234567788888888899999999999999876 3556
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHH
Q 000705 419 EVAAGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 419 ~~av~RL~DKSs~VRK~AiqLL~~l 443 (1342)
..-..-+.|.+..||+.|+..|..+
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhccc
Confidence 6677788999999999999987654
No 93
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.97 E-value=57 Score=45.40 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=69.1
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcC-HHHHHHhHHHHHHHHhcCC--ChhhHhhHHHHhhhhhhccCc
Q 000705 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIID-ADYCDANLQLLFTVVESSP--SEIVRSNCTIALGDLAVRFPN 1009 (1342)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs-~~~c~~~l~llf~~le~s~--~~~vR~N~vi~lgDL~~rfpn 1009 (1342)
.|-|+....|+.-.. ..+.+|-.++-+ +|-|+.+ +...+. ....-.+=+... +..||.=++|+.+|.....=+
T Consensus 297 ~~~~~~~~fl~r~~D--~~~~vR~~~v~~-~~~~l~~~~~~~~~-~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~ 372 (1266)
T KOG1525|consen 297 TYDDLWSAFLGRFND--ISVEVRMECVES-IKQCLLNNPSIAKA-STILLALRERDLDEDVRVRTQVVIVACDVMKFKLV 372 (1266)
T ss_pred cchHHHHHHHHHhcc--CChhhhhhHHHH-hHHHHhcCchhhhH-HHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh
Confidence 455666666655333 356666555443 3433444 222222 222222222444 456778888888888887777
Q ss_pred ccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000705 1010 LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1342)
Q Consensus 1010 lvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1342)
++-+-...+-.||+|+-..||+.|++-|+.|-.+
T Consensus 373 ~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 373 YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6666677788899999999999999999999886
No 94
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=73.80 E-value=13 Score=45.58 Aligned_cols=108 Identities=19% Similarity=0.033 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.++.+|++|.-+|+++-. ..-.+.|...| ++++|.||.+++-++|- |- .+|+ +.+-..|+|+|+.|
T Consensus 98 ~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L-~~~~p~vR~aal~al~~---r~---~~~~-~~L~~~L~d~d~~V 163 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGG------RQAEPWLEPLL-AASEPPGRAIGLAALGA---HR---HDPG-PALEAALTHEDALV 163 (410)
T ss_pred CCHHHHHHHHHHHhcCCc------hHHHHHHHHHh-cCCChHHHHHHHHHHHh---hc---cChH-HHHHHHhcCCCHHH
Confidence 456688888888887532 22335555556 67778888877766554 21 2343 45556677888888
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000705 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
|+.++.+|-.|=..+.+. .+..++.|+|+.||.-|-.=...+
T Consensus 164 ra~A~raLG~l~~~~a~~------~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 164 RAAALRALGELPRRLSES------TLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred HHHHHHHHHhhccccchH------HHHHHHcCCCHHHHHHHHHHHHHc
Confidence 888888887765544332 234558888888887776544333
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.29 E-value=5.6 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000705 418 AEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 418 ~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1342)
+.....-|.|++..||.+|+.-|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445566778888888888877777654
No 96
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=73.28 E-value=71 Score=37.43 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=66.6
Q ss_pred hcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc-c--ccccchh---------H
Q 000705 985 ESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN-D--MMKVKGY---------I 1052 (1342)
Q Consensus 985 e~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~-d--miKvKg~---------l 1052 (1342)
-+++++.||.-.+.+||=.|.-..++-..+.+-++..+...+..||-+|+.+++-|++- | ++...+. +
T Consensus 36 v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l 115 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSL 115 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHH
Confidence 47888999999999999999999999999999999999777999999999999998864 3 3333332 2
Q ss_pred -HHHHHHhcCCChhHHHHH
Q 000705 1053 -NEMAIRVEDEDQRISNLA 1070 (1342)
Q Consensus 1053 -~~~a~~l~D~d~~I~~~a 1070 (1342)
--+...+.+.+++++..|
T Consensus 116 ~~~l~~~l~~~~~~~~~~a 134 (298)
T PF12719_consen 116 LKILTKFLDSENPELQAIA 134 (298)
T ss_pred HHHHHHHHhcCCHHHHHHH
Confidence 124445555665555443
No 97
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.91 E-value=22 Score=42.45 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=79.0
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhc
Q 000705 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA------NLQLLFTVVESSPSEIVRSNCTIALGDLAVR 1006 (1342)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~------~l~llf~~le~s~~~~vR~N~vi~lgDL~~r 1006 (1342)
.+.|++. ...+ .++.||+.|+-.+|..-- +--+|.. -++-|+.+|.+++...+|++++.|++=|..-
T Consensus 125 gl~~ll~-~l~~-----~~~~lR~~Aa~Vigt~~q-NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 125 GLVPLLG-YLEN-----SDAELRELAARVIGTAVQ-NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred CHHHHHH-HhcC-----CcHHHHHHHHHHHHHHHh-cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhc
Confidence 3445544 4444 678999999999998744 3333333 3588999998777778999999999999998
Q ss_pred cCcccccc-----hHHHhhhcCC--CCHHHHHHHHHHHHHHHHccccc
Q 000705 1007 FPNLLEPW-----TENMYARLKD--PSMAVRKNAVLVLSHLILNDMMK 1047 (1342)
Q Consensus 1007 fpnlvep~-----t~~ly~~L~D--~~~~VR~~~l~vlthLIl~dmiK 1047 (1342)
||--++.+ +.-|-..|.+ .++.+++-++..++.|+..++..
T Consensus 198 ~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 198 NKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred CcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 88877765 3444555556 67788888888888888776643
No 98
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.20 E-value=56 Score=43.10 Aligned_cols=132 Identities=22% Similarity=0.245 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCch----hHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000705 301 DTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESY----KIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1342)
Q Consensus 301 Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY----~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1342)
|+=.-=|+=.=++.|++..|.-|++ .|..+.++++- .+|--|=|++++++... .+. ..+.++.
T Consensus 781 dsyvyLnaI~gv~~Lcevy~e~il~---dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---Gel-------~~~y~~~ 847 (982)
T KOG4653|consen 781 DSYVYLNAIRGVVSLCEVYPEDILP---DLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL---GEL-------VFKYKAV 847 (982)
T ss_pred CceeeHHHHHHHHHHHHhcchhhHH---HHHHHHHhcccCCCccceehHHHHHHHHHHHh---ccH-------HHHHHHH
Confidence 5545555556677888889999888 45555444432 24555558888876431 111 1223555
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHh
Q 000705 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSI-GLWNEVAEVAAGRL-EDKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 377 lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~-~~~~~v~~~av~RL-~DKSs~VRK~AiqLL~~lL~ 445 (1342)
++++-..=++|--.=-|..++-.+..||...+.-. .++.+++...+.=. -|.|++|||+|++|+..+|.
T Consensus 848 Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 848 LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 66666655565544459999999999999765433 24445544332211 28999999999999999987
No 99
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=71.45 E-value=23 Score=41.00 Aligned_cols=110 Identities=16% Similarity=0.147 Sum_probs=86.9
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC
Q 000705 329 VLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS 408 (1342)
Q Consensus 329 ~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~ 408 (1342)
.|-++|.++.-..|.--++.+++++..+-.+. + .+++ ...+++-..+|+-|... +... |+.+..|+..+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~-L---~~~e----v~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~ 72 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF-L---SRQE----VQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKN 72 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh-c---cHHH----HHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcC
Confidence 46788999999999999999999986653221 2 1223 68899999999965544 6665 999999999888
Q ss_pred cchhhHHHHHHHHHhh--ccCCchhHHHHHHHHHHHHHhhCC
Q 000705 409 VSIGLWNEVAEVAAGR--LEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 409 iP~~~~~~v~~~av~R--L~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
+|......+++..... ++-....+|....++|..++.+|+
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 8888877888877764 445677899999999999999865
No 100
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=71.31 E-value=1.2e+02 Score=40.62 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=142.7
Q ss_pred chhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHh-----hccchhhhHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000705 201 DENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACAT-----KYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEK 275 (1342)
Q Consensus 201 ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk-----~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~ 275 (1342)
+++--.+|.--+..-.+++.+.-..+.+...+.++++..| +|-.+..+..+++.+|.. +.+..+.|++...+..
T Consensus 764 ~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~-~~~g~~aa~~fsiim~ 842 (1030)
T KOG1967|consen 764 EEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG-PSTGSPAAKLFSIIMS 842 (1030)
T ss_pred cHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC-ccccchHHHhhHhhhc
Confidence 3344444544455555555555555666666666654433 333455677889998877 5666788888877664
Q ss_pred H-------cCCc------------hhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHH-hhHhHH----H
Q 000705 276 K-------YADG------------SLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLIS-TNIGVL----I 331 (1342)
Q Consensus 276 ~-------~~~~------------~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl-~~is~L----~ 331 (1342)
. +++. +++..+++-|. . .+...--+|=.-|..+-.+.|+-++ +++..| +
T Consensus 843 D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t------~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLL 915 (1030)
T KOG1967|consen 843 DSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-T------APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLL 915 (1030)
T ss_pred cChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-c------CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHH
Confidence 2 2222 22223333222 1 1222233566677777778887654 776554 5
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHH--HcCCCC-chhhHHHHHHHHHHHh---
Q 000705 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLE--RCRDVS-AYTRSRVLQVWAELCE--- 405 (1342)
Q Consensus 332 ~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~e--R~~D~n-ayVRskvLQ~~~~L~e--- 405 (1342)
+.|+.+.-..|-+.++++--.+... +.+-.+ . -+.++-.|+. +=+|-| .-||=-|||++.-|-+
T Consensus 916 q~Ls~~D~~v~vstl~~i~~~l~~~---~tL~t~---~----~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 916 QALSMPDVIVRVSTLRTIPMLLTES---ETLQTE---H----LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP 985 (1030)
T ss_pred HhcCCCccchhhhHhhhhhHHHHhc---cccchH---H----HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC
Confidence 5588999999999999988776432 111111 1 4556655554 444554 7799999999999998
Q ss_pred -cCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCC
Q 000705 406 -EHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPF 449 (1342)
Q Consensus 406 -~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf 449 (1342)
....| ++..|++..+--|.||--.|||.|+.- ++++|
T Consensus 986 ~~~l~~--fr~~Vl~al~k~LdDkKRlVR~eAv~t-----R~~W~ 1023 (1030)
T KOG1967|consen 986 TKSLLS--FRPLVLRALIKILDDKKRLVRKEAVDT-----RQNWY 1023 (1030)
T ss_pred Cccccc--ccHHHHHHhhhccCcHHHHHHHHHHHH-----hhhhh
Confidence 23444 556999999999999999999999975 45555
No 101
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=70.79 E-value=13 Score=45.80 Aligned_cols=85 Identities=21% Similarity=0.071 Sum_probs=63.2
Q ss_pred hHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcC
Q 000705 328 GVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEH 407 (1342)
Q Consensus 328 s~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~ 407 (1342)
..|...|+.++-.+|.++++++|..- . + -..-|..-+.|.++|||..++.++..|....
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~------~--------------~-~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~ 178 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR------H--------------D-PGPALEAALTHEDALVRAAALRALGELPRRL 178 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------c--------------C-hHHHHHHHhcCCCHHHHHHHHHHHHhhcccc
Confidence 45777888888889988888888821 0 1 1223333345999999999999999999988
Q ss_pred CcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000705 408 SVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1342)
Q Consensus 408 ~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1342)
++|. +. .-+.|.+..||..|+-=+..
T Consensus 179 a~~~-----L~----~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 179 SEST-----LR----LYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred chHH-----HH----HHHcCCCHHHHHHHHHHHHH
Confidence 8884 11 12999999999999976633
No 102
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=70.32 E-value=94 Score=39.35 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=79.1
Q ss_pred HHHHHHHHhhhhhHHHhhHhHHHHHh---CCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc
Q 000705 309 GRFLVELADRLPKLISTNIGVLILHF---GGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC 385 (1342)
Q Consensus 309 s~FL~~Lae~~P~lvl~~is~L~~~L---d~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~ 385 (1342)
-.=|-.|+.+.|.++...++.+..+| +++.--+|-+|-++++.+...+....+ +..... +..+..++.+..
T Consensus 395 Ye~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~--~~~~~~----~~~~~~l~~~~~ 468 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPD--DEDEQK----RLLLELLLLSYI 468 (501)
T ss_pred HHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhcccc--chhHHH----HHHHHHHHHhhc
Confidence 46688999999999999999888875 578899999999999999876655443 111122 566777888899
Q ss_pred CCCCchhhHHHHHHHHHHHhcCCcchhhHHH
Q 000705 386 RDVSAYTRSRVLQVWAELCEEHSVSIGLWNE 416 (1342)
Q Consensus 386 ~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~ 416 (1342)
.+....||..|++--..+.--.-+|- ||.-
T Consensus 469 ~~~~~~~R~~avk~an~~fpf~d~~a-R~i~ 498 (501)
T PF13001_consen 469 QSEVRSCRYAAVKYANACFPFSDVPA-RYIC 498 (501)
T ss_pred cchhHHHHHHHHHHHHHhCCccchHH-HHHH
Confidence 99999999999999888887777774 4433
No 103
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=70.16 E-value=51 Score=45.42 Aligned_cols=247 Identities=15% Similarity=0.200 Sum_probs=147.7
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcC--CChhhHhhHHHHhhhhhhccCcc-cccch--HHHhhhcCCCCHHHH
Q 000705 956 ASAMLALCRFMIIDADYCDANLQLLFTVVESS--PSEIVRSNCTIALGDLAVRFPNL-LEPWT--ENMYARLKDPSMAVR 1030 (1342)
Q Consensus 956 ~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s--~~~~vR~N~vi~lgDL~~rfpnl-vep~t--~~ly~~L~D~~~~VR 1030 (1342)
+++..+|||-.+ ..+.+.|..++-..++.+ .++.|-.-...++++.+.+.++. .++|. .-.--.+-|++..||
T Consensus 483 ~~~~~~lgr~AL--~nLL~~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR 560 (1120)
T PF14228_consen 483 SHARHSLGRRAL--KNLLEHNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIR 560 (1120)
T ss_pred chHHHHHHHHHH--HHHHHhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHH
Confidence 445566666443 344555666665555554 45678888999999999999886 55552 222236789999999
Q ss_pred HHHHHHHHHHHHccccccch-hHHHHHHHhcCCChhHHHHHHHHHH-HHhccCCchhhhhhhHHHhhccCCCCChhHHHH
Q 000705 1031 KNAVLVLSHLILNDMMKVKG-YINEMAIRVEDEDQRISNLAKLFFH-ELSKKGNNPIYNLLPDILGKLCNQNLKTESFCN 1108 (1342)
Q Consensus 1031 ~~~l~vlthLIl~dmiKvKg-~l~~~a~~l~D~d~~I~~~a~~ff~-eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~ 1108 (1342)
..|+.+|..|=..-+-.-.+ ....+-..+.++-+.+-..+..-.. .||+-.|..-|.+|-++..+.=+ .++.+.-+.
T Consensus 561 ~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~-~~~~~~rr~ 639 (1120)
T PF14228_consen 561 SKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFN-AVPPDARRD 639 (1120)
T ss_pred HHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHh-cCChhHHHH
Confidence 99999999887554422221 2345666788888888777776554 57777888889999998776321 334456678
Q ss_pred HHHHHHhhhhhhh--------hHH----HHHHHHHhhhhcc---cchhhHHHHHHHHhccCCChhHHHHHHHhHH--HHH
Q 000705 1109 IMQLLIGFIKKDK--------QME----ALVEKLCNRFSGV---TDIRQWEYISYCLSQLAFTEKGMKKLIESFK--TYE 1171 (1342)
Q Consensus 1109 I~~fLl~~i~KdK--------q~e----~LveKLc~Rf~~~---~~~rqwrdiafcLslL~~~ek~ikKL~e~~~--~y~ 1171 (1342)
|+.+|++.|++=. ..+ +|.+ +-.||... +-+.-|.-++ + +.+.++.+++-+- +..
T Consensus 640 mL~~LlPWvqnleL~~~~~~g~s~~vL~nL~~-iT~k~~d~~~~Eve~lW~~L~---~----~~~N~~~il~FLi~~~le 711 (1120)
T PF14228_consen 640 MLAYLLPWVQNLELVSLPESGWSEMVLNNLFY-ITIKFGDDHPNEVEALWIALA---S----NPQNIRVILDFLIELGLE 711 (1120)
T ss_pred HHHHHHHHHhhceecccCCCCcHHHHHHHHHH-HHHHhccccHHHHHHHHHHHh---c----CcccHHHHHHHHHHHhhh
Confidence 9999999997410 011 1111 12222222 4556775444 1 2345555555442 111
Q ss_pred HhhCc--hHHHHHHHHHHHHhhh----cCChhhhHHHHHHHHHHHHHh
Q 000705 1172 HALSE--DSVMDNFRNIINKSKK----FAKPEVKVCIEEFEEKLNKYH 1213 (1342)
Q Consensus 1172 dkL~d--~~V~~~F~~Ii~k~kk----~~k~e~K~~i~EfE~kl~~~~ 1213 (1342)
++=.+ .+.-..|...+.-+|+ .+..--++.|+|+=..|....
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~K~v~~yL~r~~p~~~id~Lv~el~~~~ 759 (1120)
T PF14228_consen 712 RCDQNASKEISVAFATLLPYAKRVVLYLARVSPQQMIDELVYELQQRD 759 (1120)
T ss_pred hccccchhhhhhhhhhhccccceeeEeeecCCHHHHHHHHHHHHHHhh
Confidence 11111 1222345555555666 233333577888776666543
No 104
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=69.64 E-value=86 Score=42.94 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcc-cccc-hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH--
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNL-LEPW-TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-- 1052 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnl-vep~-t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-- 1052 (1342)
|+.|+|.| +..|+.+|+-..=.+.-+++.---- ++.| .|.|-..|.|+.+.|=-.+|--|+-||..|.++=+-.+
T Consensus 619 LshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i 697 (1431)
T KOG1240|consen 619 LSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDI 697 (1431)
T ss_pred HHHHHHHh-cCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 78899999 6669999986654444444433222 4666 68999999999999999999999999999999844432
Q ss_pred -HHHHHHhcCCChhHHHHHHHHHHHHhccCCch-hhhhhhHHHhh
Q 000705 1053 -NEMAIRVEDEDQRISNLAKLFFHELSKKGNNP-IYNLLPDILGK 1095 (1342)
Q Consensus 1053 -~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~-iyn~~pdiis~ 1095 (1342)
-..+=+|+-||.=||..+-.|..+.+.+-.++ .|=.+..+|.-
T Consensus 698 ~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp 742 (1431)
T KOG1240|consen 698 LQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP 742 (1431)
T ss_pred HHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence 45666789999999999999999888874333 55544444443
No 105
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=69.43 E-value=13 Score=40.68 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhH-HHHhhhhhhccCcccccchHHHhhhcCCCCHHHH
Q 000705 952 PELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNC-TIALGDLAVRFPNLLEPWTENMYARLKDPSMAVR 1030 (1342)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~-vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR 1030 (1342)
...+-.|++.+.+.- ..+-...++.+-..+..-+++.+--.+ .-++|.+...+ +...+.++.-++++++-+|
T Consensus 65 ~E~~~la~~il~~~~---~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----~~~~~~~~~W~~s~~~w~r 137 (213)
T PF08713_consen 65 REERYLALLILDKRR---KKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----PEALELLEKWAKSDNEWVR 137 (213)
T ss_dssp HHHHHHHHHHHHHCG---GG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH----GGHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhHHHh---hhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh----HHHHHHHHHHHhCCcHHHH
Confidence 456777777776643 223334678888888877777655555 55567776666 6678899999999999999
Q ss_pred HHHHHHHHHHHHccccccchhHHHH-HHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhH
Q 000705 1031 KNAVLVLSHLILNDMMKVKGYINEM-AIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPD 1091 (1342)
Q Consensus 1031 ~~~l~vlthLIl~dmiKvKg~l~~~-a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pd 1091 (1342)
|.++.++.+++..+.. ..+.++ ..++.|++.-|+.-.--++.++++++|..+-..+-.
T Consensus 138 R~~~v~~~~~~~~~~~---~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 138 RAAIVMLLRYIRKEDF---DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHCTTTHGGGCHH---HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH---HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999998888877222 344444 456889999999888889999999986655444433
No 106
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=68.82 E-value=39 Score=42.57 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=67.7
Q ss_pred HhHHHHHHHHhcCCChhhHhhHHHHhhhhhh----ccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch
Q 000705 975 ANLQLLFTVVESSPSEIVRSNCTIALGDLAV----RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG 1050 (1342)
Q Consensus 975 ~~l~llf~~le~s~~~~vR~N~vi~lgDL~~----rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg 1050 (1342)
+-+.|||++||+.+...+---+..++|-|.. ||---++.+.|+|.+-|+-.+..|--+++-.
T Consensus 597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl-------------- 662 (858)
T COG5215 597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL-------------- 662 (858)
T ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH--------------
Confidence 4567888888888666777777788887777 8888888888888888887777776666543
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhcc--CCchhhhhhhHHHhhccC
Q 000705 1051 YINEMAIRVEDEDQRISNLAKLFFHELSKK--GNNPIYNLLPDILGKLCN 1098 (1342)
Q Consensus 1051 ~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K--~~n~iyn~~pdiis~Ls~ 1098 (1342)
++++|..|. ..+.-+|--|-+.|.+- ++++=-++=|-|+|.++|
T Consensus 663 -vgdlantl~---~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 663 -VGDLANTLG---TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred -HHHHHHHhh---hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 344444442 22444444444444442 224444445555555544
No 107
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.67 E-value=18 Score=46.61 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.|.++|++|+++||=.||-|.+-|-. .+..|..|-+|-||.-+-++||=.|- =+-+-+ -+.-|=....|+...|
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~~~~s----~V~lLses~N~HVRyGaA~ALGIaCA-GtG~~e-Ai~lLepl~~D~~~fV 640 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPEQLPS----TVSLLSESYNPHVRYGAAMALGIACA-GTGLKE-AINLLEPLTSDPVDFV 640 (929)
T ss_pred cchHHHHHHHHHheeeEecChhhchH----HHHHHhhhcChhhhhhHHHHHhhhhc-CCCcHH-HHHHHhhhhcChHHHH
Confidence 46789999999999999999998854 55566788899999999999995543 222211 1333334557999999
Q ss_pred HHHHHHHHHHH
Q 000705 1030 RKNAVLVLSHL 1040 (1342)
Q Consensus 1030 R~~~l~vlthL 1040 (1342)
|+-|+.-+.-.
T Consensus 641 RQgAlIa~amI 651 (929)
T KOG2062|consen 641 RQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
No 108
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.75 E-value=4.9e+02 Score=37.15 Aligned_cols=252 Identities=20% Similarity=0.260 Sum_probs=166.9
Q ss_pred CCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH---hcCCChhhHhhHHHHhhhhhhccCcc------cccchHHH
Q 000705 948 MNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV---ESSPSEIVRSNCTIALGDLAVRFPNL------LEPWTENM 1018 (1342)
Q Consensus 948 ~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~l---e~s~~~~vR~N~vi~lgDL~~rfpnl------vep~t~~l 1018 (1342)
|+.++.+|.+-+---.=+..=|++.-++++.-++..| -++..+.||.-.-.||.||.-+.|+- -|-| ..+
T Consensus 1008 yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw-~~~ 1086 (1702)
T KOG0915|consen 1008 YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELW-EAA 1086 (1702)
T ss_pred cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH-HHH
Confidence 4445667765444444343333666677776666655 36778999999999999999999973 2233 457
Q ss_pred hhhcCCCCHHHHHHH---HHHHHHHHHc--cc---cccchhHHHHHHHhcCCC-----hhHHHHHHHHHHHHhccCCchh
Q 000705 1019 YARLKDPSMAVRKNA---VLVLSHLILN--DM---MKVKGYINEMAIRVEDED-----QRISNLAKLFFHELSKKGNNPI 1085 (1342)
Q Consensus 1019 y~~L~D~~~~VR~~~---l~vlthLIl~--dm---iKvKg~l~~~a~~l~D~d-----~~I~~~a~~ff~eL~~K~~n~i 1085 (1342)
|+-.-|--..||+-+ ..+|+-|+-. |- .|-|--+.-+.=||.|+- ++||.++-.-.-.|++-.+..|
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 888888889999865 4455555532 22 222333455666888875 7888888888888888877888
Q ss_pred hhhhhHHHhhccCC-----------------CCChh-------------HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 000705 1086 YNLLPDILGKLCNQ-----------------NLKTE-------------SFCNIMQLLIGFIKKDKQMEALVEKLCNRFS 1135 (1342)
Q Consensus 1086 yn~~pdiis~Ls~~-----------------~~~~~-------------~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~ 1135 (1342)
--++|+.|--|-+- +...+ .....+.-++.||+ +--.|.|+.++|+=.+
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVR 1245 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHh
Confidence 88888887665321 11111 22346678899995 5578999999999998
Q ss_pred cccchhhHHHHH---------HHHhccCCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHhhhcCChh-hhHHHHHH
Q 000705 1136 GVTDIRQWEYIS---------YCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPE-VKVCIEEF 1205 (1342)
Q Consensus 1136 ~~~~~rqwrdia---------fcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~k~e-~K~~i~Ef 1205 (1342)
+.-.------.| +---.=||+.|-++-+ |+-++| .++.|..+|-+-+.+.=|+.+|+ .+..++++
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al---~~g~~d--RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~ 1320 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRAL---FPGAKD--RNESVRKAFASAMGYLAKFSSPDQMQKLIETL 1320 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHH---hhcccc--ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 862110000001 1122347888777664 566667 89999999999999999988884 44455544
Q ss_pred H
Q 000705 1206 E 1206 (1342)
Q Consensus 1206 E 1206 (1342)
-
T Consensus 1321 l 1321 (1702)
T KOG0915|consen 1321 L 1321 (1702)
T ss_pred H
Confidence 3
No 109
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=64.02 E-value=3.3e+02 Score=32.91 Aligned_cols=208 Identities=13% Similarity=0.149 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchh---HHHHHHHHhhcCCCccccC
Q 000705 225 ADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSL---ATYLIREIGRTNPKAYVKD 301 (1342)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l---~~~ilrEI~~~~~~~~~~D 301 (1342)
-+.|..+..|++.+.++.--.-..++ + +++..+..+.+..|...|+.+.+ .+.||||-.+-+
T Consensus 90 fEsrKdv~~if~~llr~~~~~~~~p~--v------~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e------- 154 (335)
T PF08569_consen 90 FESRKDVAQIFSNLLRRQIGSRSPPT--V------DYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE------- 154 (335)
T ss_dssp HHHHHHHHHHHHHHHT--BTTB--HH--H------HHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH-------
T ss_pred CcccccHHHHHHHHHhhccCCCCCch--H------HHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH-------
Confidence 35666777888877777533322111 1 22223334777778888887654 578999986543
Q ss_pred ccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHH
Q 000705 302 TVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEIL 381 (1342)
Q Consensus 302 t~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L 381 (1342)
.++.++-. . +++..+..+.++.++.+=......+-+++...-+ .-.+ -...+-+.|++..
T Consensus 155 -----~l~~~iL~----~-----~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~---~~a~---fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 155 -----SLAKIILY----S-----ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKK---LVAE---FLSNNYDRFFQKY 214 (335)
T ss_dssp -----HHHHHHHT----S-----GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHH---HHHH---HHHHTHHHHHHHH
T ss_pred -----HHHHHHhC----c-----HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHH---HHHH---HHHHHHHHHHHHH
Confidence 22333222 1 2566688899999999988888888887653110 1000 0233478888855
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHhcCCc-ch-hhHH---HHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChh
Q 000705 382 LERCRDVSAYTRSRVLQVWAELCEEHSV-SI-GLWN---EVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIA 456 (1342)
Q Consensus 382 ~eR~~D~nayVRskvLQ~~~~L~e~~~i-P~-~~~~---~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L~~~ 456 (1342)
..=+.-.|-.+|-.+|+.+..|...+.- .. .+|. .-+.+...=|.|||-.+|=-|.+.++-++.+ |-. ..
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K----~~ 289 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNK----PP 289 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-----BH
T ss_pred HHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCC----Ch
Confidence 5555555666799999999999986532 21 2221 6677888889999999999999999988774 532 34
Q ss_pred HHHHHHHHHHHHhccc
Q 000705 457 SFEATLDEYRKKLNGL 472 (1342)
Q Consensus 457 ~~~~~Le~~~~~L~~l 472 (1342)
.+.+-|-+.+.+|-+.
T Consensus 290 ~I~~iL~~Nr~kLl~f 305 (335)
T PF08569_consen 290 PIVDILIKNREKLLRF 305 (335)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665443
No 110
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.61 E-value=4.8e+02 Score=34.66 Aligned_cols=180 Identities=16% Similarity=0.245 Sum_probs=125.3
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHH-HHHHH---hcCCChhhHhhHHHHhh-------hhhhccCcccccchH--
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQL-LFTVV---ESSPSEIVRSNCTIALG-------DLAVRFPNLLEPWTE-- 1016 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~l-lf~~l---e~s~~~~vR~N~vi~lg-------DL~~rfpnlvep~t~-- 1016 (1342)
.|..+|.+|+.||+|+|.+-=+|=+..+.- ||.+- -+|+++.|..-.|=.-+ |++.-|-..+|.+.+
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 588999999999999999999998877633 66442 35888877766655444 666666666665544
Q ss_pred --------------HHhhhc-C-CCC--------HHHHHHHHHHHHHHHHccccccchhHHHHHH-HhcCCChhHHHHHH
Q 000705 1017 --------------NMYARL-K-DPS--------MAVRKNAVLVLSHLILNDMMKVKGYINEMAI-RVEDEDQRISNLAK 1071 (1342)
Q Consensus 1017 --------------~ly~~L-~-D~~--------~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~-~l~D~d~~I~~~a~ 1071 (1342)
.|-..| + |++ ..---+|||+++.+.-.+||. ++..+.. -+..||-+=++.|-
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcchhhhhHHH
Confidence 222222 1 333 345568999999999999998 7766666 89999999999999
Q ss_pred HHHH-HHhccCCch----hhhhhhHHHhhccCC-----CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 000705 1072 LFFH-ELSKKGNNP----IYNLLPDILGKLCNQ-----NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCN 1132 (1342)
Q Consensus 1072 ~ff~-eL~~K~~n~----iyn~~pdiis~Ls~~-----~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~ 1132 (1342)
.-|- -|.-.+++. +-..+|-++.-++|+ .-.+=.|-+|.+|+..-+.-+-+--+++.=|.+
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~ 456 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLE 456 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHH
Confidence 9775 455554433 345667777777887 234557788888888777655554444444433
No 111
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.57 E-value=1.2e+02 Score=40.04 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=99.4
Q ss_pred HHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc-cchHHHhhhcCCCC-----HHHHHHHHHHHHHHHHc
Q 000705 970 ADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE-PWTENMYARLKDPS-----MAVRKNAVLVLSHLILN 1043 (1342)
Q Consensus 970 ~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlve-p~t~~ly~~L~D~~-----~~VR~~~l~vlthLIl~ 1043 (1342)
+.|-++++.-|++.+..-....|..++==+-..+.-.-|.-.. .-.--+|.+|..+. +.+|..=-.++..+...
T Consensus 33 ~~~~~e~V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~~~~~~~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~ 112 (727)
T PF12726_consen 33 ESFPEENVDQFFNMLDNWDIQRILPGLDKAKSILESIEPMTRSRALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSK 112 (727)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 6667777888888775554444444433333332222111111 12356777777653 44666666688888888
Q ss_pred ccccc-chhHHHHHHHhcCCChhHHHHHHHHHHHHhccC---C-----chhhhhhhHHHhhccCCCC---ChhHHHHHHH
Q 000705 1044 DMMKV-KGYINEMAIRVEDEDQRISNLAKLFFHELSKKG---N-----NPIYNLLPDILGKLCNQNL---KTESFCNIMQ 1111 (1342)
Q Consensus 1044 dmiKv-Kg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~---~-----n~iyn~~pdiis~Ls~~~~---~~~~f~~I~~ 1111 (1342)
+-+++ ++.+--|..+|.|+++..+.-|+..+..+..+. + .++...|...+.+++.... .-..|..-+.
T Consensus 113 ~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~ 192 (727)
T PF12726_consen 113 KPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFS 192 (727)
T ss_pred CCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Confidence 99998 888888999999999999999999999987752 1 2445555555555632222 2336888899
Q ss_pred HHHhhhhhh
Q 000705 1112 LLIGFIKKD 1120 (1342)
Q Consensus 1112 fLl~~i~Kd 1120 (1342)
.++.++++|
T Consensus 193 ~Il~~ld~~ 201 (727)
T PF12726_consen 193 LILRLLDKE 201 (727)
T ss_pred HHHHHccHH
Confidence 999999877
No 112
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.63 E-value=17 Score=43.97 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcc-hhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVS-IGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP-~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1342)
|.--|+-|+-+..=.|+-||.-||+.+..+.-.+..= ..+...++.....+..|.+++||..++||+..++..
T Consensus 56 k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~ 129 (393)
T KOG2149|consen 56 KGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILP 129 (393)
T ss_pred ccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhh
Confidence 5566788888999999999999999999999984332 236668889999999999999999999999987663
No 113
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=58.95 E-value=5.1e+02 Score=33.45 Aligned_cols=133 Identities=12% Similarity=0.048 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc
Q 000705 306 ENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC 385 (1342)
Q Consensus 306 Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~ 385 (1342)
+.+......+....+.-+++ .+.++|+...|..|...--.++-++. +... .+. . -..|++.|.+-+
T Consensus 118 ~~l~~~~~~~~~~~~~~~l~---~l~~ll~~~~~~~~~~aa~~~ag~v~----g~~i-~~~--~----~~~~l~~l~~ai 183 (569)
T KOG1242|consen 118 TCLPPLVVLSKGLSGEYVLE---LLLELLTSTKIAERAGAAYGLAGLVN----GLGI-ESL--K----EFGFLDNLSKAI 183 (569)
T ss_pred HHhhhHHHHhhccCHHHHHH---HHHHHhccccHHHHhhhhHHHHHHHc----CcHH-hhh--h----hhhHHHHHHHHh
Confidence 34444444444444444443 56677777788777766655555442 1111 111 1 468999999999
Q ss_pred CCCCchhhH-HHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh-CCCCCC
Q 000705 386 RDVSAYTRS-RVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH-NPFGPQ 452 (1342)
Q Consensus 386 ~D~nayVRs-kvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~-nPfg~~ 452 (1342)
.|.++|-|- -+++.+...|.. +.----+...++-.+....-||.--||.+|..-.+.++.. +||+-+
T Consensus 184 ~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK 253 (569)
T KOG1242|consen 184 IDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK 253 (569)
T ss_pred cccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh
Confidence 999999988 599999999985 5332234568899999999999999999999999998874 666643
No 114
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=57.79 E-value=5.1e+02 Score=36.15 Aligned_cols=239 Identities=13% Similarity=0.082 Sum_probs=145.2
Q ss_pred cccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccc--hhhhHHHHHHHHhh------cccchH
Q 000705 193 LLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHY--IEQSCASIMHLIHK------YDFVVV 264 (1342)
Q Consensus 193 ~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h--~~~~~~~IiqlL~~------~ehl~~ 264 (1342)
+...+-..+|.-+..++=...+++++|.--=...--.++.++|+. |+.... +.-|+-=|+=.|++ -.|+-.
T Consensus 448 ~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRi 526 (1431)
T KOG1240|consen 448 QELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRI 526 (1431)
T ss_pred HHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhHhhhccCccceehh
Confidence 345566778889999999999999999532222233445666643 555444 33344444433332 234445
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHhh---cCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhH
Q 000705 265 HMADAVAGAEKKYADGSLATYLIREIGR---TNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKI 341 (1342)
Q Consensus 265 ~~Ae~l~~l~~~~~~~~l~~~ilrEI~~---~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~l 341 (1342)
..|..+..+++.-.. +-+.-.++.+ .+..+ .++.+--++-.-+..|-.-+-. .+..+|-.+.-.+
T Consensus 527 ayAsnla~LA~tA~r---Fle~~q~~~~~g~~n~~n--set~~~~~~~~~~~~L~~~V~~-------~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 527 AYASNLAQLAKTAYR---FLELTQELRQAGMLNDPN--SETAPEQNYNTELQALHHTVEQ-------MVSSLLSDSPPIV 594 (1431)
T ss_pred hHHhhHHHHHHHHHH---HHHHHHHHHhcccccCcc--cccccccccchHHHHHHHHHHH-------HHHHHHcCCchHH
Confidence 677777777654211 0122223222 23222 3455555555555554333222 2233455555667
Q ss_pred HHHHHHHHHHHHHHHhcCcc------------c---ccchhhh------------hhhh-HHHHHHHHHHHcCCCCchhh
Q 000705 342 RNALVGVLGKLVAKAFKDIE------------G---EASSKSV------------RLRT-KQAMLEILLERCRDVSAYTR 393 (1342)
Q Consensus 342 Rnavvevig~ii~~~l~~~~------------~---~~~~k~~------------~~~~-rd~lld~L~eR~~D~nayVR 393 (1342)
|.|++|.|+.+= ..+-.+. + |..-|.. +.|+ -+-++=+|+.=+-|--.+|=
T Consensus 595 kr~Lle~i~~LC-~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Vi 673 (1431)
T KOG1240|consen 595 KRALLESIIPLC-VFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVI 673 (1431)
T ss_pred HHHHHHHHHHHH-HHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhH
Confidence 778888777652 2221111 1 1111100 1222 24467788888999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000705 394 SRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 394 skvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1342)
.+||+.+.-||+.+-+-+....++++.+.-=|--.+.-||+.++..|.+...
T Consensus 674 v~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 674 VSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 9999999999999988877778999999999999999999999999988755
No 115
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.46 E-value=31 Score=43.27 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~V 1029 (1342)
.|..+|+||+++||=.||-+... ++-.+..|..|-++-||+-..|+||=.|.--- -.--++-+-+...|++..|
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~----lv~tvelLs~shN~hVR~g~AvaLGiacag~G--~~~a~diL~~L~~D~~dfV 637 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDL----LVGTVELLSESHNFHVRAGVAVALGIACAGTG--DKVATDILEALMYDTNDFV 637 (926)
T ss_pred CchHHHHHHHHheeeeEecCcch----hhHHHHHhhhccchhhhhhhHHHhhhhhcCCc--cHHHHHHHHHHhhCcHHHH
Confidence 67899999999999999887653 55666677888999999999999996654222 1223556666778999999
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhcc
Q 000705 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKK 1080 (1342)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K 1080 (1342)
|..|+.-+..... .|-..=+|.++++-+.|-.-+..|
T Consensus 638 RQ~AmIa~~mIl~--------------Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 638 RQSAMIAVGMILM--------------QCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHHHh--------------hcCcccChhHHHHHHHHHHHHhhh
Confidence 9999876654332 233333455555555555544444
No 116
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=57.42 E-value=38 Score=33.83 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH---HHHHHHHh----h--ccCCchhHHHHHHHHHHHH
Q 000705 375 QAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN---EVAEVAAG----R--LEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 375 d~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~---~v~~~av~----R--L~DKSs~VRK~AiqLL~~l 443 (1342)
....+.|..|+.+.|+.|--+||.++..|+.++.-|..... .++...+. . =.|.+..||+.+.+|+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999765543221 22222111 1 1366899999999998753
No 117
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=55.28 E-value=7.8 Score=39.77 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=39.1
Q ss_pred HhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000705 999 ALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1342)
Q Consensus 999 ~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1342)
=++.++..-|+-...-.++|..+|.|+++.|+.-||.+|-||+.+|
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3455666666666777899999999999999999999999999987
No 118
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=54.92 E-value=7.4e+02 Score=34.77 Aligned_cols=260 Identities=13% Similarity=0.134 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHhccccccccCCCCcchhHHH----HHHHHHHHHhhccccc---cchhHHHHHHHHHHHHHhhccchhh
Q 000705 175 QRGRILNLIANSLEINLPLLFGSSDPDENYLS----FVVRNAFLMFENATLL---KDADTKDALCRIIGACATKYHYIEQ 247 (1342)
Q Consensus 175 qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~----l~~~~~y~lLE~~~~~---K~~~~r~~if~il~~~vk~y~h~~~ 247 (1342)
.+.++=..+.+++.+=.+.+|.....++..+. -|.+-..+.|++++.- .-+.+|-+++.++..++.......
T Consensus 258 Rrd~LR~ev~hVl~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~- 336 (1120)
T PF14228_consen 258 RRDRLRTEVTHVLRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK- 336 (1120)
T ss_pred hhhhHHHHHHHHHHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch-
Confidence 34554455777777766778876777766654 3455555656655433 445666666655544433321110
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCch---hHHHHHHHHhhcCC--CccccCccccchHHHHHHHHHhhhhhH
Q 000705 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGS---LATYLIREIGRTNP--KAYVKDTVGAENIGRFLVELADRLPKL 322 (1342)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~---l~~~ilrEI~~~~~--~~~~~Dt~g~Kn~s~FL~~Lae~~P~l 322 (1342)
. +.+ -|+- =--+=.++..|+..++... -....-||+.+... .+=.+|+..-+++..-+.+=.+..-..
T Consensus 337 --s---e~f-pfe~-RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~a 409 (1120)
T PF14228_consen 337 --S---EWF-PFEA-RKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTA 409 (1120)
T ss_pred --h---hcC-CHHH-HHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH
Confidence 0 111 1110 0111123334443332210 11244455432210 010256666667776666655555555
Q ss_pred HHhhHhHHH--HHhCCCchhHHHHHHHHHHHHHHHHhc--------------------Ccccc-----cc----------
Q 000705 323 ISTNIGVLI--LHFGGESYKIRNALVGVLGKLVAKAFK--------------------DIEGE-----AS---------- 365 (1342)
Q Consensus 323 vl~~is~L~--~~Ld~esY~lRnavvevig~ii~~~l~--------------------~~~~~-----~~---------- 365 (1342)
-+..|+.|. |.+|.....+---++..|.-|+..... |+..- +.
T Consensus 410 Al~AMAaLc~GPif~~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (1120)
T PF14228_consen 410 ALSAMAALCGGPIFDDNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSL 489 (1120)
T ss_pred HHHHHHHHhcCCccccchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHH
Confidence 566665554 345544445555566666666643111 00000 00
Q ss_pred hhhh----hhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHH
Q 000705 366 SKSV----RLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLV 441 (1342)
Q Consensus 366 ~k~~----~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~ 441 (1342)
++.. ...+. .+++...+|++-.++-|-..-..++.+++-..-.|.-.+.+++.++.=-+-|.+.-||..|++||.
T Consensus 490 gr~AL~nLL~~N~-dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~ 568 (1120)
T PF14228_consen 490 GRRALKNLLEHNP-DLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLR 568 (1120)
T ss_pred HHHHHHHHHHhhH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 0000 11122 377788889988888777777778888886555543344589999999999999999999999998
Q ss_pred HH
Q 000705 442 MM 443 (1342)
Q Consensus 442 ~l 443 (1342)
.+
T Consensus 569 ~L 570 (1120)
T PF14228_consen 569 AL 570 (1120)
T ss_pred HH
Confidence 86
No 119
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=54.02 E-value=1.3e+02 Score=34.93 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=90.1
Q ss_pred cCCChhhHhhHHHHhhhhhhccCc------ccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHh
Q 000705 986 SSPSEIVRSNCTIALGDLAVRFPN------LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRV 1059 (1342)
Q Consensus 986 ~s~~~~vR~N~vi~lgDL~~rfpn------lvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l 1059 (1342)
+++++.+|...+-.|+....+.|. -|.--+.++..+|.|. ..|.-. +.-|..|+ .|-.+.+..
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~--~~~~~~~~~------- 77 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALV--KMKNFSPES------- 77 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHH--hCcCCChhh-------
Confidence 788999999999999999999983 2333467778899554 445444 88888887 444443322
Q ss_pred cCCChhHHHHHHHHHHH-----HhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhhhhh------HHHH
Q 000705 1060 EDEDQRISNLAKLFFHE-----LSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKKDKQ------MEAL 1126 (1342)
Q Consensus 1060 ~D~d~~I~~~a~~ff~e-----L~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~I~~fLl~~i~KdKq------~e~L 1126 (1342)
+..+++.+|.+ +.++.--.+|+++--++.+-... .+. ...+.-+++.|+.||- ...|
T Consensus 78 ------~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~----~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 78 ------AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG----DDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred ------HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch----hHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33444444432 22222134555555444442210 111 1234445555655553 6777
Q ss_pred HHHHHhhhhcccchhhHHHHHHHHhccCC
Q 000705 1127 VEKLCNRFSGVTDIRQWEYISYCLSQLAF 1155 (1342)
Q Consensus 1127 veKLc~Rf~~~~~~rqwrdiafcLslL~~ 1155 (1342)
...+++.|.......+-=|+.+|-==+.|
T Consensus 148 ~~~i~~~~~~~~~~e~lFd~~~cYFPI~F 176 (262)
T PF14500_consen 148 LKVILQEFDISEFAEDLFDVFSCYFPITF 176 (262)
T ss_pred HHHHHHhcccchhHHHHHHHhhheeeeee
Confidence 88888888887777788888888655544
No 120
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=53.64 E-value=1.6e+02 Score=32.78 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhh-HhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHH
Q 000705 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIV-RSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRK 1031 (1342)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~v-R~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~ 1031 (1342)
..|-+|+.-|.+. ...++...++.+-..+.+-.+..+ =+=+-.++|.+..++|.+ .+.++.-..|++.-+||
T Consensus 61 E~r~~al~~l~~~---~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR 133 (208)
T cd07064 61 EYQYVAIDLLRKY---KKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRR 133 (208)
T ss_pred HHHHHHHHHHHHH---HhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHH
Confidence 5777777766663 234456668888888877666543 322334446666666654 57888889999999999
Q ss_pred HHHHHHHHHHHccccccchhHHH-HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHH
Q 000705 1032 NAVLVLSHLILNDMMKVKGYINE-MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIM 1110 (1342)
Q Consensus 1032 ~~l~vlthLIl~dmiKvKg~l~~-~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~ 1110 (1342)
.|+...-..+-+ ... +.+.. +..++.|++--|+...-=.+.|+++++|..+.+.+-+-... ++.-+.+...
T Consensus 134 ~ai~~~l~~~~~--~~~-~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~~~~-----m~~~s~rea~ 205 (208)
T cd07064 134 TAILHQLKYKEK--TDT-DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAHKLR-----LSPLSRREAL 205 (208)
T ss_pred HHHHHHHHHHHc--cCH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHhhhh-----cChhHHHHHH
Confidence 998754333333 222 23444 44466677777777667789999999988877766554333 3334444444
Q ss_pred HH
Q 000705 1111 QL 1112 (1342)
Q Consensus 1111 ~f 1112 (1342)
|+
T Consensus 206 k~ 207 (208)
T cd07064 206 KY 207 (208)
T ss_pred hh
Confidence 44
No 121
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=52.86 E-value=1.2e+02 Score=32.73 Aligned_cols=129 Identities=20% Similarity=0.215 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhh-HhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000705 954 LQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIV-RSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1342)
Q Consensus 954 l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~v-R~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~ 1032 (1342)
.+.+..++++.+-.. ......+..+-..++.-+++.+ =.=+.-.+|-+-..+|++ +.++.-..++++-+||-
T Consensus 52 ~~~~~~lal~~~~~~--~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~ 124 (197)
T cd06561 52 IREAQYLALDLLDKK--ELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRA 124 (197)
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHH
Confidence 355555555554332 4555556666666665555433 222333445555556654 78888889999999999
Q ss_pred HHHHHHHHHHccccccchhHHH-HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhH
Q 000705 1033 AVLVLSHLILNDMMKVKGYINE-MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPD 1091 (1342)
Q Consensus 1033 ~l~vlthLIl~dmiKvKg~l~~-~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pd 1091 (1342)
++.++..++.++. --..+.+ +..++.|++.-|+...--++.++++++|..+.+.+=.
T Consensus 125 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 125 AIVLLLRLIKKET--DFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999888811 1233344 4556666888888887889999999987766655543
No 122
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=52.69 E-value=76 Score=40.60 Aligned_cols=131 Identities=21% Similarity=0.239 Sum_probs=87.8
Q ss_pred HHHHHhcCCcCCCCChHHHHHHHHHHHHH---hhcCHHHH-----HHhHHHHHHHHhc---CCChhhHhhHHHHhhhhhh
Q 000705 937 FLSKFCRNFSLMNKYPELQASAMLALCRF---MIIDADYC-----DANLQLLFTVVES---SPSEIVRSNCTIALGDLAV 1005 (1342)
Q Consensus 937 lV~~iC~~~~~~~~~~~l~~~A~l~L~K~---m~vs~~~c-----~~~l~llf~~le~---s~~~~vR~N~vi~lgDL~~ 1005 (1342)
.+..+|.++... +++.|+.+|+++++-+ -|++..-| ++-+|-|...|.. ..+...+--.+-|||-+..
T Consensus 397 ~l~~l~~~~~~~-~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 475 (574)
T smart00638 397 ALFELAESPEVQ-KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH 475 (574)
T ss_pred HHHHHhcCcccc-ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC
Confidence 344567776555 6788999999998855 34444434 3555666666644 3455567778889997765
Q ss_pred ccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHH
Q 000705 1006 RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKL 1072 (1342)
Q Consensus 1006 rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ 1072 (1342)
|+.+..-.+.+. .=.+.++.+|-.|+.-|-++.-..==++++.+..+.. =.+++++||-.|=.
T Consensus 476 --~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n~~e~~EvRiaA~~ 538 (574)
T smart00638 476 --PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-NRAEPPEVRMAAVL 538 (574)
T ss_pred --hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-CCCCChHHHHHHHH
Confidence 888777777766 2355678999999999998877676677777765542 22355666666643
No 123
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=51.84 E-value=94 Score=30.70 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCch---hHHHHHHHHHHHHHhh
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSA---IVRKSALNLLVMMLQH 446 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs---~VRK~AiqLL~~lL~~ 446 (1342)
+..+...+....+|.+.=.|..+.+++.+||+.+.+....+..-.....+.+.|.+. .+..+--+++..++..
T Consensus 34 ~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 34 HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLISD 109 (113)
T ss_pred hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHHc
Confidence 778999999999999878899999999999999999888888889999999999877 5666666777766653
No 124
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.10 E-value=1.9e+02 Score=34.40 Aligned_cols=105 Identities=12% Similarity=0.166 Sum_probs=72.3
Q ss_pred hhhhHHHHHHhcCCcCCCCChH--------HHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhh
Q 000705 932 GHCASFLSKFCRNFSLMNKYPE--------LQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDL 1003 (1342)
Q Consensus 932 ~~f~PlV~~iC~~~~~~~~~~~--------l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL 1003 (1342)
+.|-|.+.-|+.+-..| |. |++..--|+..++.++++-++.-+..+.--+ +++++.|-.+.+-++.+|
T Consensus 117 ~vf~~Tl~MI~~d~~~y---Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~-kh~~~~I~~~~L~~l~~l 192 (319)
T PF08767_consen 117 AVFECTLPMINKDFEEY---PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGF-KHTNREISETGLNILLEL 192 (319)
T ss_dssp HHHHHHHHHHSSTSSSS---HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhC---hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHH
Confidence 44566666667765555 43 6666667778888888888888888887777 888899999999999999
Q ss_pred hhccCcccccc------------hHHHhhhcCCCC--HHHHHHHHHHHHHHH
Q 000705 1004 AVRFPNLLEPW------------TENMYARLKDPS--MAVRKNAVLVLSHLI 1041 (1342)
Q Consensus 1004 ~~rfpnlvep~------------t~~ly~~L~D~~--~~VR~~~l~vlthLI 1041 (1342)
...+.+.-++. ..+++.-|.|++ ...+.+| ++|.+|+
T Consensus 193 l~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf 243 (319)
T PF08767_consen 193 LNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLF 243 (319)
T ss_dssp HHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHH
Confidence 88777622221 345556677776 4555555 5556666
No 125
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=48.24 E-value=1.1e+02 Score=38.07 Aligned_cols=241 Identities=14% Similarity=0.220 Sum_probs=120.0
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc-CH----HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000705 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-DA----DYCDANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v-s~----~~c~~~l~llf~~le~s~~~~vR~N~vi~lgD 1002 (1342)
..++..+..++..+|+||+...=+-.+-. ++-+|-|+.|- +. .|.+.-+|.|-.+|.+.-.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFE-si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------------- 131 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFE-SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ------------- 131 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHH-HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-------------
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHH-HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 56888899999999999985300112222 33344566663 33 5899999999999965422
Q ss_pred hhhccCcccccchHHHhhhc---CCCCH--HHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000705 1003 LAVRFPNLLEPWTENMYARL---KDPSM--AVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1003 L~~rfpnlvep~t~~ly~~L---~D~~~--~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
+++|+.|.-| -+-.+ .+=.+=.-++.||+...+-.-+|.+--++++|.. =|+.-+. ++
T Consensus 132 ----------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a---~i~k~~~-~i--- 194 (435)
T PF03378_consen 132 ----------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA---YIKKDPS-FI--- 194 (435)
T ss_dssp ----------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH---HHHHHGG-G----
T ss_pred ----------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH---HHHhCch-hh---
Confidence 3334333211 11110 1111112345566666666666666444444321 0111111 11
Q ss_pred hccC-CchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhh---hhHHHHHHHHHhhhhcccchhhHHHHHHHHhcc
Q 000705 1078 SKKG-NNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKD---KQMEALVEKLCNRFSGVTDIRQWEYISYCLSQL 1153 (1342)
Q Consensus 1078 ~~K~-~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~Kd---Kq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL 1153 (1342)
...+ =++|+++|-..|++= .-+...| .+++-++.++..+ ....+++.=|.+|+...+|++=-+.+..-++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk---~~D~~gF-~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK---ANDHYGF-DLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T---TCHHHHH-HHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC---CcchHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 1111 145666665555432 2334555 4788888888764 358889999999999998887665555444444
Q ss_pred CCChhHHHHHHHhHHHHHHhhCchHHHHHHHH--HHHHhhhcCCh-hhhHHHHHHHHHH
Q 000705 1154 AFTEKGMKKLIESFKTYEHALSEDSVMDNFRN--IINKSKKFAKP-EVKVCIEEFEEKL 1209 (1342)
Q Consensus 1154 ~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~--Ii~k~kk~~k~-e~K~~i~EfE~kl 1209 (1342)
.... +--.+++.+... +. .++..+.. ++..++|...+ |-|-++--+=.-|
T Consensus 271 ~~~~-g~~~li~~id~I----Q~-glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL 323 (435)
T PF03378_consen 271 AIKY-GPDFLIQTIDSI----QP-GLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLL 323 (435)
T ss_dssp HHHH--HHHHHHHHHTT----ST-THHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHH
T ss_pred HHHc-CHHHHHHHHHHh----cC-CcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHH
Confidence 3322 555555555433 32 23332222 46666776554 5454444444334
No 126
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=47.45 E-value=48 Score=43.11 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCC
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFG 450 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg 450 (1342)
-.+|++.|.+=.+|--.+||+++|.++..|..++ |- .-+.++.+.|..|-|+-.-+--+|--||..|+..||=+
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k--PE-qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK--PE-QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC--cH-HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999999988765 63 45689999999999999999999999999999999943
No 127
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.38 E-value=93 Score=32.13 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=69.7
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcC---CChh
Q 000705 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVED---EDQR 1065 (1342)
Q Consensus 995 N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D---~d~~ 1065 (1342)
.+++.+||+.-.-++--..=...|=.+|..++|.|+..||.+|=-|+.|.--.+..++ -++.+++.+ .++.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 4677888888766665556678888999999999999999999999999977776555 257777765 4788
Q ss_pred HHHHHHHHHHHHhccC
Q 000705 1066 ISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1066 I~~~a~~ff~eL~~K~ 1081 (1342)
|+.-+..++..++.--
T Consensus 99 Vk~kil~ll~~W~~~f 114 (133)
T cd03561 99 VREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9998888888877653
No 128
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.20 E-value=62 Score=43.56 Aligned_cols=103 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHH---------hhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhh
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRF---------MIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAV 1005 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~---------m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~ 1005 (1342)
++++. ||-..-.-...|.||.=..+|||++ |++...=-++-+.+| +.+.|.||+-+|.|||-|.-
T Consensus 598 ~~li~-iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-----sD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 598 GNLIG-ICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-----SDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred ccHHH-HHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-----cCccHHHHHHHHHHHHHHhc
Q ss_pred c----cC----------------cccccchH----HHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000705 1006 R----FP----------------NLLEPWTE----NMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1342)
Q Consensus 1006 r----fp----------------nlvep~t~----~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1342)
- |+ +-+|.++. .+...++|.+++||+.-...|+|...+
T Consensus 672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG 733 (1387)
T ss_pred ccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
No 129
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.06 E-value=1.1e+02 Score=39.64 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=69.9
Q ss_pred cccchHHHhhhcCCCC--HHHHHHHHHHHHHHHH--ccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhh
Q 000705 1011 LEPWTENMYARLKDPS--MAVRKNAVLVLSHLIL--NDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIY 1086 (1342)
Q Consensus 1011 vep~t~~ly~~L~D~~--~~VR~~~l~vlthLIl--~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iy 1086 (1342)
.|.+.+.+++.|.-++ +.||+.+-+-|-||.. -|.+.+.+-..+|+.+|-|.+-++.--|-.|..-|.+|.|...-
T Consensus 144 ~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 144 AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 3666778888777655 7788888888888875 47888888888888888888888888888888888888887777
Q ss_pred hhhhHHHhhcc
Q 000705 1087 NLLPDILGKLC 1097 (1342)
Q Consensus 1087 n~~pdiis~Ls 1097 (1342)
-.+|-.+++|+
T Consensus 224 ~~~~~avs~L~ 234 (938)
T KOG1077|consen 224 TCLPLAVSRLS 234 (938)
T ss_pred hhHHHHHHHHH
Confidence 88888888876
No 130
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=46.14 E-value=3.4e+02 Score=36.56 Aligned_cols=133 Identities=16% Similarity=0.171 Sum_probs=94.9
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHh----HHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000705 301 DTVGAENIGRFLVELADRLPKLISTNIG----VLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1342)
Q Consensus 301 Dt~g~Kn~s~FL~~Lae~~P~lvl~~is----~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1342)
......+-+.-|..+|...+....+... .|++.|..--=.+|-+++.++-.+.. + . . -+.
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----s------~--~----l~~ 371 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----S------T--P----LSK 371 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----c------c--c----HHH
Confidence 4444555555666666666655554433 33333333334677777777666543 1 1 1 477
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcC---CcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCC
Q 000705 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEH---SVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPF 449 (1342)
Q Consensus 377 lld~L~eR~~D~nayVRskvLQ~~~~L~e~~---~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf 449 (1342)
+++...+..-+.||=.|....+.+.+.+... ..|..-...++...+-+..|+..-||++|..-+..++..+=.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 8888899999999999999999998888842 366666679999999999999999999999999999887654
No 131
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=45.92 E-value=4.4e+02 Score=37.57 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=108.4
Q ss_pred CCCcchhHHHHHHHHHHHHhh---------------ccccccchhHHHHHHHHHHHHHhhccchhh--hHHHHHHHHhhc
Q 000705 197 SSDPDENYLSFVVRNAFLMFE---------------NATLLKDADTKDALCRIIGACATKYHYIEQ--SCASIMHLIHKY 259 (1342)
Q Consensus 197 ~~~~ee~Fi~l~~~~~y~lLE---------------~~~~~K~~~~r~~if~il~~~vk~y~h~~~--~~~~IiqlL~~~ 259 (1342)
|+..++.+.+++.+.+-..-+ ..+. +...+--...+=|..++.+|.-+.. ...-+.++|..|
T Consensus 838 p~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~-~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Y 916 (2196)
T KOG0368|consen 838 PPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNR-AEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEY 916 (2196)
T ss_pred ChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhcccc-ccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 566677777777666553322 2211 2222222233334456777754443 333355666544
Q ss_pred ccc-------hHHHHHHHHHHHHHcCC------------------chhHHHHHHHHhhcCCCccccCccccchHHHHHHH
Q 000705 260 DFV-------VVHMADAVAGAEKKYAD------------------GSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVE 314 (1342)
Q Consensus 260 ehl-------~~~~Ae~l~~l~~~~~~------------------~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~ 314 (1342)
-.. -.+-.+.+..+.+++.. +.|+-.||.+++. .+++-+-.|..-|.+
T Consensus 917 l~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l~~-------~s~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 917 LEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQLKP-------PSSKVSDEFRDILRK 989 (2196)
T ss_pred HHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHhcC-------CCCCCCHHHHHHHHH
Confidence 322 23445666666666553 1344444444433 256666777777888
Q ss_pred HHhhhhhHHHhhHhHHHHH--hCCCchhHHHHHHHHHHHHHHHHhcCcc---cccchhhhhhhhHHHHHHHHHHHcCCCC
Q 000705 315 LADRLPKLISTNIGVLILH--FGGESYKIRNALVGVLGKLVAKAFKDIE---GEASSKSVRLRTKQAMLEILLERCRDVS 389 (1342)
Q Consensus 315 Lae~~P~lvl~~is~L~~~--Ld~esY~lRnavvevig~ii~~~l~~~~---~~~~~k~~~~~~rd~lld~L~eR~~D~n 389 (1342)
|+++..+.-- .+++.... +-++||.+|+.-++.|-..=+...-.+- ..+..+. ...+--..+|.|..=|.-.+
T Consensus 990 l~~L~~~~~~-eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~-lidS~~~v~dvL~~fF~H~d 1067 (2196)
T KOG0368|consen 990 LTELNHTNTS-EVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKE-LIDSNLSVFDVLPGFFYHSD 1067 (2196)
T ss_pred HHhhccchHH-HHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHh-hccchhhHHHHHHHhhcccc
Confidence 8887765322 23333332 3469999999999976654332211110 1111111 11123357888888888899
Q ss_pred chhhHHHHHHHHH
Q 000705 390 AYTRSRVLQVWAE 402 (1342)
Q Consensus 390 ayVRskvLQ~~~~ 402 (1342)
+-|++.||+++.+
T Consensus 1068 ~~v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1068 PTVSSAALEVYVR 1080 (2196)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
No 132
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.32 E-value=4.1e+02 Score=35.13 Aligned_cols=212 Identities=16% Similarity=0.192 Sum_probs=119.2
Q ss_pred HHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcch-hcccCccHHHHHHHHHHHhhcCCCh--HHH
Q 000705 558 CVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPL-VLSQDKSIYEAVENAFITIYVRKSP--VET 634 (1342)
Q Consensus 558 ~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~L-VWskd~~I~~~vi~ay~~Ly~~~~~--~~i 634 (1342)
..+.|=+.|.+|+.++ .-++-.=..|.+|-+|-=.|...+||+.||. |=..+-.||.+.+-|---+.|..|. -.+
T Consensus 516 rqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~ 593 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST 593 (929)
T ss_pred hhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHH
Confidence 4568889999999887 5577777889999999999999999999999 5555678988888888777777761 111
Q ss_pred HHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhhh------
Q 000705 635 AKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVL------ 708 (1342)
Q Consensus 635 a~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~Iv------ 708 (1342)
+ +|+...=..+-.+=--+.-=+.-.|.=....|+.|=-. + .+...--|.||+|-++||--...+..
T Consensus 594 V----~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl-~---~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~ 665 (929)
T KOG2062|consen 594 V----SLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPL-T---SDPVDFVRQGALIALAMIMIQQTEQLCPKVNG 665 (929)
T ss_pred H----HHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhh-h---cChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence 1 12222111111111111111112233334444444222 1 12233457799999999753332222
Q ss_pred -hhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccc-cccc-c--cccCcchHHHHHHHHHc--cCCCCCCchHHHHHH
Q 000705 709 -GSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQE-DKKK-L--LLSYGSRVFATLESLIT--GFWLPDNIWYTAADK 781 (1342)
Q Consensus 709 -~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~-~k~~-~--r~~~~~~if~~L~~~l~--~~~~~~~~W~~~aeq 781 (1342)
+.++..++. . +.+-.++++-.+.=|-+.+. .++. + +-...|.=...+..++. .|| .|||++-
T Consensus 666 frk~l~kvI~----d--KhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~W----yWfPL~~- 734 (929)
T KOG2062|consen 666 FRKQLEKVIN----D--KHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYW----YWFPLIH- 734 (929)
T ss_pred HHHHHHHHhh----h--hhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHH----HHHHHHH-
Confidence 233333322 2 34556777765555544432 2222 3 32344544455555554 345 7999863
Q ss_pred HHHHHHhcCCChH
Q 000705 782 AISAIYTIHPTPE 794 (1342)
Q Consensus 782 aInaIy~l~~~Pd 794 (1342)
.-.||-.|-
T Consensus 735 ----flSLaf~PT 743 (929)
T KOG2062|consen 735 ----FLSLAFTPT 743 (929)
T ss_pred ----HHHHhcCcc
Confidence 224555664
No 133
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=45.18 E-value=1.9e+02 Score=30.76 Aligned_cols=100 Identities=14% Similarity=0.247 Sum_probs=63.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCC-CchhhHHHHHHHHHHHhcC------C
Q 000705 336 GESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDV-SAYTRSRVLQVWAELCEEH------S 408 (1342)
Q Consensus 336 ~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~-nayVRskvLQ~~~~L~e~~------~ 408 (1342)
+..+..+.++++.+|+++-..-++.+.+. ..+. +...+..+.++-... ++.+=++.-.++..+-+++ .
T Consensus 40 ~~~~~~~~~~le~y~ei~~~aWk~a~~~~-~~~~----e~~~iq~~~~~a~~~~~~~~~~~~R~~L~~f~~~k~~~~v~~ 114 (152)
T PF12422_consen 40 CQIPQVSKSVLELYGEILFRAWKKASKDK-LEEI----EEVCIQDLMEAAIHLEYLPLHSKFREVLLSFHSQKKRKGVDE 114 (152)
T ss_pred HHcccccHHHHHHHHHHHHHHhHhhhhhH-HHHH----HHHHHHHHHHHhHHhcchHhHHHHHHHHHHHHhcccccchHH
Confidence 33388999999999999988877652211 1112 455666666665555 6666666667777776666 1
Q ss_pred cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000705 409 VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 409 iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1342)
++.+-+..++ -+.|+-..+.||.||..++..+
T Consensus 115 mL~rl~~PiL---~r~L~~~n~~Vr~na~~l~~~a 146 (152)
T PF12422_consen 115 MLLRLYEPIL---WRALQAANAKVRSNAAALFLDA 146 (152)
T ss_pred HHHHHHHHHH---HHHHcCCCcchhccHHHHHHHH
Confidence 1222222222 2457888999999999987653
No 134
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=45.12 E-value=9e+02 Score=32.27 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=116.9
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHh------HHHHHHHHhcCCChhhHhhHHHHhhhhhhccC---ccccc-chHHHh
Q 000705 950 KYPELQASAMLALCRFMIIDADYCDAN------LQLLFTVVESSPSEIVRSNCTIALGDLAVRFP---NLLEP-WTENMY 1019 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~------l~llf~~le~s~~~~vR~N~vi~lgDL~~rfp---nlvep-~t~~ly 1019 (1342)
++..+...++..|-|+....+ ++.. +|-|.+++ .++++.++..++=.|..|.+--- .+|.- ..|.|-
T Consensus 302 ~n~ellil~v~fLkkLSi~~E--NK~~m~~~giV~kL~kLl-~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv 378 (708)
T PF05804_consen 302 ENEELLILAVTFLKKLSIFKE--NKDEMAESGIVEKLLKLL-PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLV 378 (708)
T ss_pred CCHHHHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHH
Confidence 467888899999999866543 2332 47788888 56777788888888888776211 11111 246777
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcc----ccccchhHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCch--hh--hhhh
Q 000705 1020 ARLKDPSMAVRKNAVLVLSHLILND----MMKVKGYINEMAIR-VEDEDQRISNLAKLFFHELSKKGNNP--IY--NLLP 1090 (1342)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~d----miKvKg~l~~~a~~-l~D~d~~I~~~a~~ff~eL~~K~~n~--iy--n~~p 1090 (1342)
..|.|++ .|..|+.+|.||=..| |+.-.+-+.-++.+ +.-+++++.--+-.+...|+.-..|+ +. |.||
T Consensus 379 ~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 379 ELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQ 456 (708)
T ss_pred HHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHH
Confidence 7888765 7778999999998855 44444444334443 44466666433333444555432232 10 2233
Q ss_pred HHHhhccCCCCChhHHHHHHHHHHhhhhhhh-hHHHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHHHHHh---
Q 000705 1091 DILGKLCNQNLKTESFCNIMQLLIGFIKKDK-QMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIES--- 1166 (1342)
Q Consensus 1091 diis~Ls~~~~~~~~f~~I~~fLl~~i~KdK-q~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~--- 1166 (1342)
-.+.+.-.. ...-.-.+++.+-.+=...| .....+..|..-+..+.++..--.+.=+|+.|+..+-...+++.+
T Consensus 457 ~L~~ra~~~--~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~l 534 (708)
T PF05804_consen 457 SLMKRALKT--RDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNL 534 (708)
T ss_pred HHHHHHHhc--ccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCH
Confidence 333222100 00001112222222210000 011122233333333444444444445677888888788888875
Q ss_pred HHHHHHhh
Q 000705 1167 FKTYEHAL 1174 (1342)
Q Consensus 1167 ~~~y~dkL 1174 (1342)
+|..++.|
T Consensus 535 lp~L~~~L 542 (708)
T PF05804_consen 535 LPWLKDLL 542 (708)
T ss_pred HHHHHHHh
Confidence 56677888
No 135
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=44.96 E-value=1.4e+02 Score=35.42 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=54.9
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC--------------cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000705 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHS--------------VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1342)
Q Consensus 377 lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~--------------iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1342)
|+..|..-+. .||.+|.-||..+.+-..... +|. .-.-+++....-|+|.+.+|+|+++-||..
T Consensus 174 F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 174 FWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 4444444333 588899999999887665432 332 223677888889999999999999998644
Q ss_pred HHhhCCCCC-----CCChhHHHHHHHHH
Q 000705 443 MLQHNPFGP-----QLRIASFEATLDEY 465 (1342)
Q Consensus 443 lL~~nPfg~-----~L~~~~~~~~Le~~ 465 (1342)
+=|... .++.++...-+...
T Consensus 252 ---~~PL~s~~~~~~~~~~d~~~Lv~a~ 276 (307)
T PF04118_consen 252 ---HFPLDSPVLQSLLSPEDKELLVMAA 276 (307)
T ss_pred ---hCCCCCcchhhhCCHHHHHHHHHHH
Confidence 445543 25655554444433
No 136
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=44.03 E-value=60 Score=30.89 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=55.4
Q ss_pred hccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHH
Q 000705 241 KYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELA 316 (1342)
Q Consensus 241 ~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~La 316 (1342)
.|.+...+...+++-++.|+.+.+|++|.+-.+ ..+++.-|+-.|+..++...-.. --..| -|+|..|..||
T Consensus 5 shsnP~~vf~~il~Qie~YdNli~~vVe~~ky~-t~l~~DvL~~~ll~~L~~~~r~~--~k~dg-~~~s~Wlq~La 76 (77)
T PF11732_consen 5 SHSNPLIVFDVILSQIESYDNLIEPVVESLKYF-TDLGYDVLTFCLLERLSNPGRSR--LKDDG-TNISQWLQSLA 76 (77)
T ss_pred hccCcHHHHHHHHHHHHHhhhhHHHHHHHHhhc-chhhHHHHHHHHHHHHhcccchh--cCcCC-CCHHHHHHHHh
Confidence 366667778889999999999999999988654 77888888889999888644222 12223 78999998887
No 137
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.99 E-value=83 Score=37.82 Aligned_cols=115 Identities=21% Similarity=0.230 Sum_probs=76.1
Q ss_pred HhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHHh
Q 000705 327 IGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC-RDVSAYTRSRVLQVWAELCE 405 (1342)
Q Consensus 327 is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~-~D~nayVRskvLQ~~~~L~e 405 (1342)
+-.++.+|++.+-++|-.-..++|.++..-...++ .. --..++..|...+ .|-+-.||+|||-.+..|+.
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe------~v---~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQE------QV---IELGALSKLLKILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHH------HH---HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 34555689999999999999999998743222111 00 0112344444333 58888999999999999999
Q ss_pred cCCcchhhHHHH--HHHHHhhccC--CchhHHHHHHHHHHHHHhhCCCC
Q 000705 406 EHSVSIGLWNEV--AEVAAGRLED--KSAIVRKSALNLLVMMLQHNPFG 450 (1342)
Q Consensus 406 ~~~iP~~~~~~v--~~~av~RL~D--KSs~VRK~AiqLL~~lL~~nPfg 450 (1342)
++.--...+..+ +.....=|++ ++...++.|+-|++.++..+++-
T Consensus 197 n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 197 NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 763222222211 2333334555 78888999999999999988864
No 138
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.89 E-value=8.6e+02 Score=31.42 Aligned_cols=369 Identities=14% Similarity=0.143 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhc----cCh
Q 000705 632 VETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVS--MSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAK----SSA 705 (1342)
Q Consensus 632 ~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~--~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~----~~~ 705 (1342)
..+|++|..=+++---+-.--+|+++..+..+|.-+ ..+|+.|-.-|. ..+ ...+|+|+| +||+|. +..
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a-~s~--~~n~rkGgL--iGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYA-YSP--HANMRKGGL--IGLAAVAIALGIK 77 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhc-cCc--ccccccchH--HHHHHHHHHhccc
Confidence 457777777777666666667999999999999766 467777777765 211 234566774 454443 221
Q ss_pred -hhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 000705 706 -AVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAIS 784 (1342)
Q Consensus 706 -~Iv~~~l~~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaIn 784 (1342)
.....++-.=+=.+|+ ..|..+-.|+|-.|..++...+..+ ++.-++||..|..+... ++..=-+.||---.
T Consensus 78 ~~~Y~~~iv~Pv~~cf~---D~d~~vRyyACEsLYNiaKv~k~~v-~~~Fn~iFdvL~klsaD---sd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFS---DQDSQVRYYACESLYNIAKVAKGEV-LVYFNEIFDVLCKLSAD---SDQNVRGGAELLDR 150 (675)
T ss_pred cHHHHHHhhHHHHHhcc---CccceeeeHhHHHHHHHHHHhccCc-ccchHHHHHHHHHHhcC---CccccccHHHHHHH
Confidence 1122222111112454 5788888999999999987666431 23456677777766542 22111122332222
Q ss_pred HHHhcCC--ChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHH-------HHHHHHH
Q 000705 785 AIYTIHP--TPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIA-------MNQLVYI 855 (1342)
Q Consensus 785 aIy~l~~--~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVA-------lk~lV~l 855 (1342)
.|=.+.. .+.--...+|.-+..+.+.. .-.-=.|+||-+- ++.+-|+
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~------------------------n~~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVI------------------------NPMTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcC------------------------CchHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 2211110 00000111111112222100 0000122222221 1111111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc-cchhhhhhhhHHHHHh---hhccCCCCcCchh
Q 000705 856 ESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA-ASEDAKLDTLSEKAEK---EIISGGSSQKNLI 931 (1342)
Q Consensus 856 E~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~-t~eD~~~d~i~~i~E~---eLl~g~~~~~sLL 931 (1342)
...-.- +. .-.| ..+.|+..||. +.+.. .+++..
T Consensus 207 ~~~ldG---------------------------------------Lf~~LsD-~s~eVr~~~~t~l~~fL~e--I~s~P~ 244 (675)
T KOG0212|consen 207 PSLLDG---------------------------------------LFNMLSD-SSDEVRTLTDTLLSEFLAE--IRSSPS 244 (675)
T ss_pred hHHHHH---------------------------------------HHHHhcC-CcHHHHHHHHHHHHHHHHH--HhcCcc
Confidence 111111 11 1111 12344555554 22210 011222
Q ss_pred h-hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH-hcCCCh--------h-hHhhHHHHh
Q 000705 932 G-HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV-ESSPSE--------I-VRSNCTIAL 1000 (1342)
Q Consensus 932 ~-~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~l-e~s~~~--------~-vR~N~vi~l 1000 (1342)
+ .|..++.-+..+-.. ++|.+|.-|+.-+--|.-+...----+++-+++.+ .-.++. . .=+|.+..+
T Consensus 245 s~d~~~~i~vlv~~l~s--s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQS--SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhccccccC--CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 2 343333333333222 57788888877777776666554444444433322 111111 1 112233344
Q ss_pred hhhhhccCcccc--cchHHHhhhcCCCCHHHHHHHHHHHHHHHH---ccccccchhHH-HHHHHhcCCChhHHHHHHHHH
Q 000705 1001 GDLAVRFPNLLE--PWTENMYARLKDPSMAVRKNAVLVLSHLIL---NDMMKVKGYIN-EMAIRVEDEDQRISNLAKLFF 1074 (1342)
Q Consensus 1001 gDL~~rfpnlve--p~t~~ly~~L~D~~~~VR~~~l~vlthLIl---~dmiKvKg~l~-~~a~~l~D~d~~I~~~a~~ff 1074 (1342)
.+-..-=.. +| +-.+-+-..|.|....-|-.+|.-+.||-- +.|++--.+|+ -+.+.|.|++..+--.+-...
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 333322222 33 456677788999999999999999999864 34444445553 477899999999999998888
Q ss_pred HHHhccC
Q 000705 1075 HELSKKG 1081 (1342)
Q Consensus 1075 ~eL~~K~ 1081 (1342)
.+++.-.
T Consensus 402 a~i~~s~ 408 (675)
T KOG0212|consen 402 ASICSSS 408 (675)
T ss_pred HHHhcCc
Confidence 8888765
No 139
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=42.47 E-value=25 Score=35.29 Aligned_cols=92 Identities=11% Similarity=0.194 Sum_probs=65.4
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHH
Q 000705 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDIL 1093 (1342)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdii 1093 (1342)
...+...|.++..--.-|...+|.+|.-.|+|+.+..= ...=.-++..++-.+..++.|+..+... .++..+
T Consensus 20 ~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~p~is~~e~~~~~~~~~l~~~~~g-------s~~~l~ 92 (115)
T PF03965_consen 20 VREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREKIGRAYVYSPLISREEYLAQELRQFLDRLFDG-------SIPQLV 92 (115)
T ss_dssp HHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEEETTCEEEEESSSHHHHHHHHHHHHHHHHSTT-------HHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhCCceeEeecCCceEEEeCCcHHHHHHHHHHHHHHHHhCC-------CHHHHH
Confidence 36788888888555667778899999999999998542 1222357888888999999999866544 377778
Q ss_pred hhccCC-CCChhHHHHHHHHH
Q 000705 1094 GKLCNQ-NLKTESFCNIMQLL 1113 (1342)
Q Consensus 1094 s~Ls~~-~~~~~~f~~I~~fL 1113 (1342)
.+|.+. .+++++...+-+.|
T Consensus 93 ~~l~~~~~ls~~el~~L~~li 113 (115)
T PF03965_consen 93 AALVESEELSPEELEELRKLI 113 (115)
T ss_dssp HHHHHCT-S-HHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHH
Confidence 888543 78888887766544
No 140
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.34 E-value=1.2e+02 Score=38.41 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=96.9
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHh-----HHHHHHHHhcCCChhhHhhHHHHhhhhhhccC-
Q 000705 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDAN-----LQLLFTVVESSPSEIVRSNCTIALGDLAVRFP- 1008 (1342)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~-----l~llf~~le~s~~~~vR~N~vi~lgDL~~rfp- 1008 (1342)
.|+.+..-.+ .+..++..|+-+||.+.-=|+.+=+-. ++-|..++.++..-.+.-|++-+|.-||.-=.
T Consensus 154 vp~fi~Ll~s-----~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 154 VPIFIQLLSS-----PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred hHHHHHHhcC-----CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 5666666555 467899999999999966555443322 35566666555555688899999999986431
Q ss_pred ----cccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc-----cccccchhHHHHHHHhcCCChhHHH
Q 000705 1009 ----NLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN-----DMMKVKGYINEMAIRVEDEDQRISN 1068 (1342)
Q Consensus 1009 ----nlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~-----dmiKvKg~l~~~a~~l~D~d~~I~~ 1068 (1342)
.-|.+=.|-|...|+..|+.|...|..-|++|--. +|+=--|.+.++..+|.-+.+.+..
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 46777899999999999999999999999999844 4444556778888999988876663
No 141
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=42.20 E-value=4.5e+02 Score=29.67 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=107.4
Q ss_pred HHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH-----HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc-
Q 000705 936 SFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY-----CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN- 1009 (1342)
Q Consensus 936 PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~-----c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpn- 1009 (1342)
|++..++++ |+..|..|+-+|.++....+.. ..+=-.-||-.|=.|+.|.+...+.--+++|..++|.
T Consensus 4 ~~~k~LAs~------d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASN------DKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcC------ChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 455555544 8899999999999998776554 2222356677777899999999999999999999988
Q ss_pred -ccccchHHHhhhcCCCC---HHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHH-Hhcc--CC
Q 000705 1010 -LLEPWTENMYARLKDPS---MAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHE-LSKK--GN 1082 (1342)
Q Consensus 1010 -lvep~t~~ly~~L~D~~---~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~e-L~~K--~~ 1082 (1342)
..=.|...++..++-+. ...|-.=.++|..-+++.++. +..--.-+.+-|..+...+... |... .|
T Consensus 78 ~~~~~f~~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~-------~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p 150 (217)
T PF05997_consen 78 KAALLFLKAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFR-------FLKKNGWDKELVEEFNEILSETPLNPNDQVP 150 (217)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCcHHHHHHHHHHHHHccCCCcCCCc
Confidence 45566677777776655 233444444444444333221 1111111223444444444443 2222 24
Q ss_pred chhhhhhhHHHh----hccCC--------CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 000705 1083 NPIYNLLPDILG----KLCNQ--------NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCN 1132 (1342)
Q Consensus 1083 n~iyn~~pdiis----~Ls~~--------~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~ 1132 (1342)
+.+.-|+.||+- +.... +++.+.+..+++-.+..+.+. ....+..|+..
T Consensus 151 ~Gl~~H~~Di~ldEL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s-~~k~l~~~i~~ 211 (217)
T PF05997_consen 151 NGLRYHFADIFLDELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKS-PDKVLRKRIKE 211 (217)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 555555555432 22111 366777777777777666433 33455555543
No 142
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=41.66 E-value=1.5e+02 Score=35.70 Aligned_cols=114 Identities=16% Similarity=0.256 Sum_probs=84.4
Q ss_pred HHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHH--------HhhhcCCCCHHHHHH
Q 000705 961 ALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN--------MYARLKDPSMAVRKN 1032 (1342)
Q Consensus 961 ~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~--------ly~~L~D~~~~VR~~ 1032 (1342)
+++|+++-|+ ++-.||..+ ..++=.|=+.+..-+-|+..||+.++-.|... .-..|..++=..||+
T Consensus 155 ~l~~~iL~~~-----~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 155 SLAKIILYSE-----CFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHHHHHHTSG-----GGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHHHHhCcH-----HHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 4677777666 334488876 56777799999999999999999998877543 445788999999999
Q ss_pred HHHHHHHHHHcc--------ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhcc
Q 000705 1033 AVLVLSHLILND--------MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKK 1080 (1342)
Q Consensus 1033 ~l~vlthLIl~d--------miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K 1080 (1342)
+|..|..|+++- +|-=.-.|--|..+|-|+.+.|+--|=.-|.-....
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999753 333344555688899999999999997777664443
No 143
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=40.79 E-value=2.3e+02 Score=36.45 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=92.7
Q ss_pred HHHHhhcCHHHHHHhHHHHHHHHhc---CCChhhHhhHHHHhhhhhhc--------------cCcccccchHHHhhhcC-
Q 000705 962 LCRFMIIDADYCDANLQLLFTVVES---SPSEIVRSNCTIALGDLAVR--------------FPNLLEPWTENMYARLK- 1023 (1342)
Q Consensus 962 L~K~m~vs~~~c~~~l~llf~~le~---s~~~~vR~N~vi~lgDL~~r--------------fpnlvep~t~~ly~~L~- 1023 (1342)
|..+......-.++-+..++.+++. ..++.+|..+++++|.|..+ .+.+++.|.+.+...|.
T Consensus 418 l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 497 (618)
T PF01347_consen 418 LASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKE 497 (618)
T ss_dssp HHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHH
Confidence 3333334445556666666666643 24577888899988888643 45777888888888877
Q ss_pred ---CCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCC---ChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhcc
Q 000705 1024 ---DPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDE---DQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1024 ---D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~---d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1342)
..+...+-.+|..|-++=. -..+..+..++.+. ...||-.|-.=|..++...|+.+.+.|-+|+..=+
T Consensus 498 ~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 498 AVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTT 571 (618)
T ss_dssp HHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TT
T ss_pred HhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence 4556777777777776632 23445666677777 78888888887888888888889998888887544
Q ss_pred CCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 000705 1098 NQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRF 1134 (1342)
Q Consensus 1098 ~~~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf 1134 (1342)
.+ .| -+|.-|++=+- -+....++.++.+.+
T Consensus 572 e~---~E--vRiaA~~~lm~--~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 572 ED---PE--VRIAAYLILMR--CNPSPSVLQRIAQSL 601 (618)
T ss_dssp S----HH--HHHHHHHHHHH--T---HHHHHHHHHHH
T ss_pred CC---hh--HHHHHHHHHHh--cCCCHHHHHHHHHHH
Confidence 32 12 33433332221 334455555555444
No 144
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=40.51 E-value=2.3e+02 Score=35.57 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=71.3
Q ss_pred HcCCch----hHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCc-hhHHHHHHHHHH
Q 000705 276 KYADGS----LATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGES-YKIRNALVGVLG 350 (1342)
Q Consensus 276 ~~~~~~----l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~es-Y~lRnavvevig 350 (1342)
++.+.+ |+-.|+..+....+.. .=....-|.++.++..+-.+.|.++...-..|+.++.+-+ ..=|.-+-.-+.
T Consensus 253 ~~ad~sLi~~L~pvlleRs~~Lfp~~-~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlv 331 (459)
T PF14764_consen 253 QDADGSLICQLLPVLLERSDALFPIP-QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLV 331 (459)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHH
Confidence 445544 4445555555555433 2234566889999999999999999998888888888532 333444444444
Q ss_pred HHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhh
Q 000705 351 KLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTR 393 (1342)
Q Consensus 351 ~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVR 393 (1342)
-+|-++.+..-...=..++ ...|++.|+-=.+-++...|
T Consensus 332 WaIGEy~s~~~d~rct~~~----i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 332 WAIGEYLSVSYDRRCTVEQ----INEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHhcccccccCCccCHHH----HHHHHHHHHHHHHHHhhccc
Confidence 4544444332221112345 88999999886666666664
No 145
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.67 E-value=9.5e+02 Score=32.18 Aligned_cols=152 Identities=16% Similarity=0.202 Sum_probs=101.5
Q ss_pred HHHHHhhhhhHHHhhHhHHHHHhC-CCchhHHHHHHHHHHHHHHHHhcCcc-----c----ccc-h------------hh
Q 000705 312 LVELADRLPKLISTNIGVLILHFG-GESYKIRNALVGVLGKLVAKAFKDIE-----G----EAS-S------------KS 368 (1342)
Q Consensus 312 L~~Lae~~P~lvl~~is~L~~~Ld-~esY~lRnavvevig~ii~~~l~~~~-----~----~~~-~------------k~ 368 (1342)
+..|+.+.|+.-.-.|+.|...|- .-.|.--+++++++-.+|.......+ + ++. + ++
T Consensus 378 i~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 378 IRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKE 457 (865)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 344566667666666666666654 34588999999999999875332211 0 000 0 00
Q ss_pred -hhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh--
Q 000705 369 -VRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ-- 445 (1342)
Q Consensus 369 -~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~-- 445 (1342)
.+..+=..+.-...-|++=.|+.||+.|++++.++--++..| +..|..+-.+-+.|+--.||-.|--.|..+..
T Consensus 458 gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l---~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 458 GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL---LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc---cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 011112456667778999999999999999999999444334 24677788889999999999999998888874
Q ss_pred ---hCCC-CCCCChhHHHHHHHHHH
Q 000705 446 ---HNPF-GPQLRIASFEATLDEYR 466 (1342)
Q Consensus 446 ---~nPf-g~~L~~~~~~~~Le~~~ 466 (1342)
+.|| +.+-+...++..|-.+.
T Consensus 535 ~~l~~~~~~l~~s~~~le~~l~~y~ 559 (865)
T KOG1078|consen 535 DVLNQNYSGLFVSIPGLERSLVSYI 559 (865)
T ss_pred hhhcccccccccccchhHHHHHHHh
Confidence 3444 24455566666666655
No 146
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=39.29 E-value=6.7e+02 Score=29.06 Aligned_cols=177 Identities=14% Similarity=0.207 Sum_probs=99.5
Q ss_pred HHHHHHHHhhccccc-----cchhHHHHHHHHHHHHHhhccchhhh--HHHHHHHHh-hcccchHHHHHHHHHHHHHcCC
Q 000705 208 VVRNAFLMFENATLL-----KDADTKDALCRIIGACATKYHYIEQS--CASIMHLIH-KYDFVVVHMADAVAGAEKKYAD 279 (1342)
Q Consensus 208 ~~~~~y~lLE~~~~~-----K~~~~r~~if~il~~~vk~y~h~~~~--~~~IiqlL~-~~ehl~~~~Ae~l~~l~~~~~~ 279 (1342)
+.+-+|.++|.|..+ ....+|-.+.+.|+.+-...+...+. +.+++..+. .|.|-+....=.+..+.+.++.
T Consensus 58 wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 58 WLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred HHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 344566666653221 44567777778777776665654433 556666664 5666555555555556566666
Q ss_pred chhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHH-HHHhCCCch-hHHHHHHHHHHHHHHHHh
Q 000705 280 GSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVL-ILHFGGESY-KIRNALVGVLGKLVAKAF 357 (1342)
Q Consensus 280 ~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L-~~~Ld~esY-~lRnavvevig~ii~~~l 357 (1342)
...-+.+.+=|......+ ...+.+-..+-++++..|......+..+ ..+++...- -+..+|+..+ + ..
T Consensus 138 ~~~~~~L~~mi~~~~~~e-----~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~---~--~~ 207 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSE-----SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV---L--LT 207 (278)
T ss_pred hHHHHHHHHHHHhccccc-----chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---H--HH
Confidence 666555555566655332 4667788888899999999988877544 445665433 4444444331 1 11
Q ss_pred cCcccccchhhhhhhhHHHHHHHHHHHc-CCCCchhhHHH
Q 000705 358 KDIEGEASSKSVRLRTKQAMLEILLERC-RDVSAYTRSRV 396 (1342)
Q Consensus 358 ~~~~~~~~~k~~~~~~rd~lld~L~eR~-~D~nayVRskv 396 (1342)
+ ... +.....+.+...+|++.+...+ ...++-.++.+
T Consensus 208 ~-~~~-~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 208 T-QSK-DLSSSEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred c-CCc-cccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 1 111 1111123445777888555433 34455444444
No 147
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.42 E-value=1.5e+02 Score=29.22 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchh---HHHHHHHHHHHHHh
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAI---VRKSALNLLVMMLQ 445 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~---VRK~AiqLL~~lL~ 445 (1342)
...+...+.+..+|.+.=.|-.+.+++.+|+..+.++...+..-.......+.|-..- .-.+--+++..++.
T Consensus 34 ~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~ 108 (113)
T PF02847_consen 34 HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA 108 (113)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999988888888888888887655 55555555555554
No 148
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.56 E-value=5.2e+02 Score=35.23 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc
Q 000705 346 VGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL 425 (1342)
Q Consensus 346 vevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL 425 (1342)
+++|-+|+.+.+++++.+++..+. --.+++.+ .-=|. + .+-.+....+++|++||
T Consensus 724 ~~il~~i~~~~l~~e~~~D~d~~~----a~kLle~i-------------------iL~~k-g-~~dq~iplf~~~a~~~l 778 (1010)
T KOG1991|consen 724 LQILLEIIKKVLTSENGEDSDCES----ACKLLEVI-------------------ILNCK-G-LLDQYIPLFLELALSRL 778 (1010)
T ss_pred HHHHHHHHHHHHcCCCCchHHHHH----HHHHHHHH-------------------HHHhc-C-cHhhHhHHHHHHHHHHH
Confidence 467777777777777666554432 12222222 11111 2 33345567899999999
Q ss_pred cC--CchhHHHHHHHHHHHHHhhCCC
Q 000705 426 ED--KSAIVRKSALNLLVMMLQHNPF 449 (1342)
Q Consensus 426 ~D--KSs~VRK~AiqLL~~lL~~nPf 449 (1342)
.+ +++..|.-++++....|-.||-
T Consensus 779 ~~~~e~s~~~~~~leVvinalyynP~ 804 (1010)
T KOG1991|consen 779 TREVETSELRVMLLEVVINALYYNPK 804 (1010)
T ss_pred hccccchHHHHHHHHHHHHHHHcCcH
Confidence 88 9999999999999999888885
No 149
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=37.42 E-value=2.3e+02 Score=30.37 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=50.6
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcC--H---HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000705 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIID--A---DYCDANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs--~---~~c~~~l~llf~~le~s~~~~vR~N~vi~lgD 1002 (1342)
++.++.+.--+....++ +++.-|-+|+..+.-.+..+ + +.|..-+..+..+|++...+.++.-++.++++
T Consensus 20 ~~~l~~l~~ri~~LL~s-----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~ 94 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQS-----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTR 94 (165)
T ss_pred HHHHHHHHHHHHHHhCC-----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44556665555555655 34455566666666666654 2 44677789999999998889999999999887
Q ss_pred hh
Q 000705 1003 LA 1004 (1342)
Q Consensus 1003 L~ 1004 (1342)
+.
T Consensus 95 l~ 96 (165)
T PF08167_consen 95 LF 96 (165)
T ss_pred HH
Confidence 65
No 150
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=36.86 E-value=55 Score=42.29 Aligned_cols=139 Identities=22% Similarity=0.265 Sum_probs=99.2
Q ss_pred hhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhH----HHHHHHHhcCCChhhHhhHHHHhhhhh-
Q 000705 930 LIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANL----QLLFTVVESSPSEIVRSNCTIALGDLA- 1004 (1342)
Q Consensus 930 LL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l----~llf~~le~s~~~~vR~N~vi~lgDL~- 1004 (1342)
+-..-.|-|....++ .++.||..++-++.=+. +..-++++ --.|.-+....++.||+|-.|++|-.+
T Consensus 366 ~~d~I~phv~~G~~D-----Tn~~Lre~Tlksm~~La---~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~ 437 (690)
T KOG1243|consen 366 LNDQIFPHVALGFLD-----TNATLREQTLKSMAVLA---PKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAP 437 (690)
T ss_pred hcchhHHHHHhhccc-----CCHHHHHHHHHHHHHHH---hhhchhhhcHHHHHHHHhhCccccCcccccceeeeccccc
Confidence 444455666655555 67899999888775442 22333333 223344445567899999999999665
Q ss_pred -----hccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHH-HccccccchhH-HHHHHHhcCCChhHHHHHHHHHHHH
Q 000705 1005 -----VRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLI-LNDMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1005 -----~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLI-l~dmiKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
+|.+.++-++|. .|+|+=+--|+-++..+.-.. .=++-.+.-+| -.++-.++|+++.+++-|..-+...
T Consensus 438 ~l~~~~R~~vL~~aftr----alkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 438 HLAASVRKRVLASAFTR----ALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred ccchhhhccccchhhhh----hhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 477777766654 699999999999999887655 34677888888 4899999999999999998866654
Q ss_pred hcc
Q 000705 1078 SKK 1080 (1342)
Q Consensus 1078 ~~K 1080 (1342)
..|
T Consensus 514 l~k 516 (690)
T KOG1243|consen 514 LEK 516 (690)
T ss_pred Hhh
Confidence 444
No 151
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=36.84 E-value=1.2e+02 Score=38.33 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhH------HHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHhh
Q 000705 952 PELQASAMLALCRFMIIDADYCDANL------QLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMYA 1020 (1342)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~~~l------~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~-----t~~ly~ 1020 (1342)
..++.+|++-+-|=|.-|-.|-...| .+|+.+|.+ |+..|..-..++.|++.+-|.||=+-+ ++-+-.
T Consensus 402 d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~ 480 (743)
T COG5369 402 DDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVN 480 (743)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHH
Confidence 57888888888888888887766554 789999944 777889999999999999999987766 445566
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcCCChhHHHHHHHHHH
Q 000705 1021 RLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVEDEDQRISNLAKLFFH 1075 (1342)
Q Consensus 1021 ~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D~d~~I~~~a~~ff~ 1075 (1342)
.+.-+|...|++++-||-||+-|+.=-.|=+. ..+.-...||+=.+..-+-..|.
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilr 541 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILR 541 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHH
Confidence 77777889999999999999988764333222 23555667777666654444443
No 152
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=36.62 E-value=1.1e+03 Score=30.68 Aligned_cols=201 Identities=16% Similarity=0.230 Sum_probs=118.5
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCC---ChhhHhhHHHHhhhhh
Q 000705 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSP---SEIVRSNCTIALGDLA 1004 (1342)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~---~~~vR~N~vi~lgDL~ 1004 (1342)
+..+..|+|.+++.-.+|+.+ -...+..-...++..+ |.+ ..+.+++-+|.+.- +..++-=.++..|-||
T Consensus 328 N~dI~~~ip~Lld~l~dp~~~-~~e~~~~L~~ttFV~~--V~~----psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 328 NPDIQKIIPTLLDALADPSCY-TPECLDSLGATTFVAE--VDA----PSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred cHHHHHHHHHHHHHhcCcccc-hHHHHHhhcceeeeee--ecc----hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 667899999999999999866 3333322222222221 111 44555555553332 2345566777889999
Q ss_pred hcc--CcccccchHH----HhhhcCCCCHHHHHHHHHHHHHHHH-ccccccchhHHHHHHHhcCCChhH--HHHHHHHHH
Q 000705 1005 VRF--PNLLEPWTEN----MYARLKDPSMAVRKNAVLVLSHLIL-NDMMKVKGYINEMAIRVEDEDQRI--SNLAKLFFH 1075 (1342)
Q Consensus 1005 ~rf--pnlvep~t~~----ly~~L~D~~~~VR~~~l~vlthLIl-~dmiKvKg~l~~~a~~l~D~d~~I--~~~a~~ff~ 1075 (1342)
.-- |+-++||.+. +..-+.|+.|.||..+-..|.-|+- -|+.+..+.+.++.-.+.++-... .-.|+..=.
T Consensus 401 ~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~e 480 (569)
T KOG1242|consen 401 KLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSE 480 (569)
T ss_pred HhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHH
Confidence 888 8899999555 5566789999999999999976663 345554454444443333322111 112222222
Q ss_pred HHhccCCchhhhhhhHHHhhccCCCCC------hhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhc
Q 000705 1076 ELSKKGNNPIYNLLPDILGKLCNQNLK------TESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSG 1136 (1342)
Q Consensus 1076 eL~~K~~n~iyn~~pdiis~Ls~~~~~------~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~ 1136 (1342)
.++.=+-.....++|+++..-+...+. .-.|-.++-+.++|. ..+.+-.+++-+|++...
T Consensus 481 vl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~-~~~yi~~i~~~~~k~~ad 546 (569)
T KOG1242|consen 481 VLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQ-FQPYIHEILDEFLKGLAD 546 (569)
T ss_pred HHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHH-hHHHHHHHHHHHHHHhhh
Confidence 233323256788899999888754222 112223444455554 345677788888888763
No 153
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=35.72 E-value=9.9e+02 Score=30.01 Aligned_cols=342 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 000705 68 FDRVYSLIRNFSSLSPSCKLSLVESLRSN-----LSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIV 142 (1342)
Q Consensus 68 FD~lysll~~f~~l~~~~~~~l~~~l~s~-----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~ 142 (1342)
+..+-.++++-.......|...+..|... +...+..+.++-++|. |-...... +.-+|..|+.
T Consensus 50 ~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Gr---di~~~~~~---------i~~~L~~wl~ 117 (464)
T PF11864_consen 50 LELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGR---DIDFFEYE---------IGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCc---Cchhcccc---------hHHHHHHHHH
Q ss_pred HHhhhccccCCCCCcccccccCCCCCCccch-hhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhcccc
Q 000705 143 LAQEFNISSNNNPKVTASTRKKQPVNSWNWD-PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATL 221 (1342)
Q Consensus 143 ~~~e~~~~~~~~~~~~~k~kK~~~~~~~~W~-~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~ 221 (1342)
...+........ ..+.++.+.+....-+-+ ..-...+..+.+++..+ ....+|+++..+.+.+..+.=+..
T Consensus 118 ~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn------~~~l~e~~i~~lv~~i~~iC~~Ts- 189 (464)
T PF11864_consen 118 PSYQAARSARRK-AKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN------FNYLDEDEISSLVDQICTICKSTS- 189 (464)
T ss_pred HHHHHHHHHHHH-hhccccccccccccccchhhhHHHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHHhccC-
Q ss_pred ccchhHHHHHHHHHHHHHhhccchh---------------------hhHHHHHHHHhhcccchHHHHHHHHHHH-----H
Q 000705 222 LKDADTKDALCRIIGACATKYHYIE---------------------QSCASIMHLIHKYDFVVVHMADAVAGAE-----K 275 (1342)
Q Consensus 222 ~K~~~~r~~if~il~~~vk~y~h~~---------------------~~~~~IiqlL~~~ehl~~~~Ae~l~~l~-----~ 275 (1342)
+.......++++.+.+. ||+.. +..-++|.+|-. .|....+...+..+. .
T Consensus 190 --~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 190 --SEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred --cHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCcc
Q ss_pred HcCCchhHHHHHHHHhhcCCCccccCccccc-------hHHHHHHHHHhhhhhHHHhhHhHHHHHh--------CCCchh
Q 000705 276 KYADGSLATYLIREIGRTNPKAYVKDTVGAE-------NIGRFLVELADRLPKLISTNIGVLILHF--------GGESYK 340 (1342)
Q Consensus 276 ~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~K-------n~s~FL~~Lae~~P~lvl~~is~L~~~L--------d~esY~ 340 (1342)
.+....+.--=+.-+...-... ....-|. =+..|...|....|.+...-+..+..+| ..+.+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc------cchhhhhhhhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHHHh-------
Q 000705 341 IRNALVGVLGKLVAKAFKDIEGE------ASSKSVRLRTKQAMLEILLERCRDVSAYT--RSRVLQVWAELCE------- 405 (1342)
Q Consensus 341 lRnavvevig~ii~~~l~~~~~~------~~~k~~~~~~rd~lld~L~eR~~D~nayV--RskvLQ~~~~L~e------- 405 (1342)
.+++++-.++.....-+... +.-... -..+++. .|..++.+.|. |-+..+.+.+...
T Consensus 344 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~-ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~ 415 (464)
T PF11864_consen 344 ---IILDIIEEIFDKIQPFDSWYSNSSSLDQLSSN----LHSLLSS-IESLYEQHDFNGPKDKLFNFFERVHSYLPDSSA 415 (464)
T ss_pred ---HHHHHHHHHHhhccccccccccccchHHHHHH----HHHHHHH-HHHHHhCCCcCccHHHHHHHHHHHhccCCHHHH
Q ss_pred --------cCCcchhh-HHHHHHHHHhhcc--CCchhHHHHHHHHHHHH
Q 000705 406 --------EHSVSIGL-WNEVAEVAAGRLE--DKSAIVRKSALNLLVMM 443 (1342)
Q Consensus 406 --------~~~iP~~~-~~~v~~~av~RL~--DKSs~VRK~AiqLL~~l 443 (1342)
.-+-|..- |..-+...+++.- ++++.||-.|++.+..+
T Consensus 416 ~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 416 LLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 154
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=35.02 E-value=42 Score=41.01 Aligned_cols=68 Identities=22% Similarity=0.463 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc---ccccc--hHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000705 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN---LLEPW--TENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1342)
Q Consensus 977 l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpn---lvep~--t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1342)
+..|+++|+.|.+|.+=|=+--=+|-+..-||- +|+.| -..+.+.|+-+||.||.+||.-+--||.+.
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 578899999999997744333333444455664 56666 467899999999999999999998888654
No 155
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=35.01 E-value=1.2e+03 Score=30.60 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=83.0
Q ss_pred cCCChhhHhhHHHHhhhhhhccCccccc--chHHHhhhcCCCCHHHHHHHHHHHHHHHHcccc---------ccchhHHH
Q 000705 986 SSPSEIVRSNCTIALGDLAVRFPNLLEP--WTENMYARLKDPSMAVRKNAVLVLSHLILNDMM---------KVKGYINE 1054 (1342)
Q Consensus 986 ~s~~~~vR~N~vi~lgDL~~rfpnlvep--~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmi---------KvKg~l~~ 1054 (1342)
+.-++.||.-++.+|+|.+--+|..+=. +..+.--.|.|-+..||.+.+.+|-||+..+-- +.|..|.+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE 364 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILE 364 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 5566888888899999988888765432 344555689999999999999999999976432 23444444
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhh
Q 000705 1055 MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGF 1116 (1342)
Q Consensus 1055 ~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~ 1116 (1342)
| |..|.|- +|-.+-.-..+|..+| -+-+-=+.|++.+- -.+.++.|.++-+++..+
T Consensus 365 ~--~r~D~d~-VRi~sik~l~~lr~lg--~L~~SeIlIvsscm-lDi~pd~r~~~~E~v~~i 420 (740)
T COG5537 365 F--LRTDSDC-VRICSIKSLCYLRILG--VLSSSEILIVSSCM-LDIIPDSRENIVESVESI 420 (740)
T ss_pred H--Hhhccch-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHH-hcCCCcchHHHHHHHHHH
Confidence 4 4566666 7777766777888776 44444556666662 133444444444444433
No 156
>PF14165 YtzH: YtzH-like protein
Probab=34.32 E-value=58 Score=31.59 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=35.3
Q ss_pred cCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCC
Q 000705 645 SNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSG 684 (1342)
Q Consensus 645 at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~ 684 (1342)
-|.+|..-+|+|+..|+.++.|++.+-++|=+||.+...|
T Consensus 23 gTvsEcEQieRLvksLm~n~~i~~~ik~~L~~Iy~ysq~G 62 (87)
T PF14165_consen 23 GTVSECEQIERLVKSLMANPNIDADIKQTLEEIYSYSQNG 62 (87)
T ss_pred CcHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHccC
Confidence 4778899999999999999999999999999999755443
No 157
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.04 E-value=1.3e+03 Score=34.22 Aligned_cols=101 Identities=10% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccCcchHHHHhhhcchhcccC-ccHHHHHHHHHHHhhcCCC---------hHHHHHHHHHHHhh---c
Q 000705 579 ENTILLLMRCKQFQIDGAEACLHKMLPLVLSQD-KSIYEAVENAFITIYVRKS---------PVETAKNLLNLAID---S 645 (1342)
Q Consensus 579 ~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd-~~I~~~vi~ay~~Ly~~~~---------~~~ia~nLi~L~~~---a 645 (1342)
.+.++=|+...-|.=..-.+|+|.+|.-.--++ ...-+.++++|-.-|+..+ +..+|=.+|-|-.+ .
T Consensus 678 ~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp 757 (1780)
T PLN03076 678 LKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNP 757 (1780)
T ss_pred HHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCC
Confidence 345555555444444445688888887665554 5688999999999998655 23344455544333 3
Q ss_pred CcchhhHHHHHHHHHH---hCCCCCHHHHHHHHHHhh
Q 000705 646 NIGDQAAMEFIVGTLV---SKGDVSMSTISALWDFFC 679 (1342)
Q Consensus 646 t~~dl~sLEeLl~~~~---~~~~I~~~vi~~LW~~~~ 679 (1342)
+...-.+.|+-+...- ..++++.+.+..+.+...
T Consensus 758 ~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~ 794 (1780)
T PLN03076 758 MVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERIS 794 (1780)
T ss_pred ccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Confidence 4444555666666542 234799999998888775
No 158
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=33.69 E-value=2.3e+02 Score=33.73 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=70.7
Q ss_pred chhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc---CHHH---HHHhHHHHHHHH--hc---------CCChh
Q 000705 929 NLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII---DADY---CDANLQLLFTVV--ES---------SPSEI 991 (1342)
Q Consensus 929 sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v---s~~~---c~~~l~llf~~l--e~---------s~~~~ 991 (1342)
.++..+.|.+..++.+.+. .+..|++++.||+=.+.+ +.+- |-+.+..+|... +. .+++.
T Consensus 125 ei~~~~~~~L~~~l~d~s~---~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSA---SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHHHHHHHHHHhCCcc---chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 3556678888899988753 467777776666655443 2222 236777555433 22 22467
Q ss_pred hHhhHHHHhhhhhhccCc-----ccccchHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000705 992 VRSNCTIALGDLAVRFPN-----LLEPWTENMYARLKDPSMAVRKNAVLVLSHL 1040 (1342)
Q Consensus 992 vR~N~vi~lgDL~~rfpn-----lvep~t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1342)
|.++++-+-|=|+-.-|. .++...+.+...|.-++..||-.|--.|.-|
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 888888777766644343 4455677888888888888988887777654
No 159
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.08 E-value=59 Score=26.29 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=18.7
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000705 1015 TENMYARLKDPSMAVRKNAVLVLSHL 1040 (1342)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1342)
.+.|-..|+++++.||++|+-.|.+|
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35666777777777777777777765
No 160
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.87 E-value=2.6e+02 Score=33.41 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=81.0
Q ss_pred HHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHH----HHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH
Q 000705 309 GRFLVELADRLPKLISTNIGVLILHFGGESYKIRNAL----VGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER 384 (1342)
Q Consensus 309 s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnav----vevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR 384 (1342)
-.|+..|++--|..+.+++-.++-.+=.+-=++|.+| +-+++.|+..+ ++ .-.+. -|.++-.|.-|
T Consensus 109 Ln~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l-n~-----~i~~~----ld~lv~~Ll~k 178 (334)
T KOG2933|consen 109 LNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL-NN-----SIDQE----LDDLVTQLLHK 178 (334)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HH-----HHHHH----HHHHHHHHHhh
Confidence 4577788888888888888777766655566677666 45667766432 11 11112 68888899999
Q ss_pred cCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHH
Q 000705 385 CRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNL 439 (1342)
Q Consensus 385 ~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqL 439 (1342)
.-+-|.|||.-|..++..++..- -|. .++...+--+.-....||.+|...
T Consensus 179 a~~dnrFvreda~kAL~aMV~~v-tp~----~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHV-TPQ----KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhcc-ChH----HHHHHHHHHHhhhchhhhhhhhcc
Confidence 99999999999999999998753 343 233333333677788898887654
No 161
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.55 E-value=2e+02 Score=35.24 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=60.0
Q ss_pred chHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH----HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh
Q 000705 1014 WTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE----MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL 1089 (1342)
Q Consensus 1014 ~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~----~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~ 1089 (1342)
+...+-.+++--+..||+.|+.-|..++.+-+..+.++++. .+-.+.|+|..+|+..-.+|. +.||+.-
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~-------~~i~~~~ 131 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLD-------SLILPAC 131 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHH-------HHHhhcc
Confidence 35788889999999999999999999999999999998865 455778999999999999887 4455555
Q ss_pred hHH
Q 000705 1090 PDI 1092 (1342)
Q Consensus 1090 pdi 1092 (1342)
|+-
T Consensus 132 ~e~ 134 (393)
T KOG2149|consen 132 KED 134 (393)
T ss_pred hhh
Confidence 544
No 162
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=32.23 E-value=2.6e+02 Score=40.01 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=55.8
Q ss_pred hhcccCccHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC--CC--CHHHHHHHHHHh
Q 000705 606 LVLSQDKSIYEAVENAFITIYVRKS---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG--DV--SMSTISALWDFF 678 (1342)
Q Consensus 606 LVWskd~~I~~~vi~ay~~Ly~~~~---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~--~I--~~~vi~~LW~~~ 678 (1342)
|+||+++.|++--...|+.+|..-+ -+.|..+|+..+..-+-++..+-=.++..++.+. .+ -...|..+-++.
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l 522 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDYL 522 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999997766 4789999999885545545444333445555432 00 022222222322
Q ss_pred hccCCCCCHHhHHHHHHHHHHHhc
Q 000705 679 CFNVSGTTPEKSRAALSVLCMAAK 702 (1342)
Q Consensus 679 ~~~~~~~s~~~~r~Al~lL~Mia~ 702 (1342)
. +.+..|-|....||+.+|-
T Consensus 523 ~----~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 523 D----NLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp G----G--HHHHHHHHHHHHHHHH
T ss_pred h----cCCHHHHHHHHHHHHHHhc
Confidence 2 3566677777777776653
No 163
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=31.86 E-value=1.8e+02 Score=30.70 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=69.0
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHH------HHHHHhcC------C
Q 000705 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYIN------EMAIRVED------E 1062 (1342)
Q Consensus 995 N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~------~~a~~l~D------~ 1062 (1342)
-.++-+||+.-.-|+---.=...|-.+|+.+++.|.-.||.+|--++.|-=-++.-+++ +|.+++.+ +
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCC
Confidence 45788899998777654445778889999999999999999999999998777755553 68888853 5
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 000705 1063 DQRISNLAKLFFHELSKK 1080 (1342)
Q Consensus 1063 d~~I~~~a~~ff~eL~~K 1080 (1342)
++.|++-....+.+++..
T Consensus 100 ~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 100 SEKVKTKIIELLYSWTLE 117 (139)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 788999888888888754
No 164
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=31.42 E-value=6.1e+02 Score=28.03 Aligned_cols=122 Identities=22% Similarity=0.278 Sum_probs=72.5
Q ss_pred hHhhHHHHhhhhhhc-------------cCcc---cccc-hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH
Q 000705 992 VRSNCTIALGDLAVR-------------FPNL---LEPW-TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054 (1342)
Q Consensus 992 vR~N~vi~lgDL~~r-------------fpnl---vep~-t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~ 1054 (1342)
||-+++.++++++.. ||.- =.+. ..-+.-.|+|+++.||-.|+.+|+.|+-+ .|..+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g----sk~~L~- 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG----SKPFLA- 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc----cHHHHH-
Confidence 677777777777777 3443 1222 23445578999999999999999999876 344433
Q ss_pred HHHHhcCCC-----------hhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccC--C--CCChhHHHHHHHHHHhhhh
Q 000705 1055 MAIRVEDED-----------QRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCN--Q--NLKTESFCNIMQLLIGFIK 1118 (1342)
Q Consensus 1055 ~a~~l~D~d-----------~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~--~--~~~~~~f~~I~~fLl~~i~ 1118 (1342)
+|-.-..+. ..|..+=+....-|..-.....-..+-.++..|-. | .++.+=...+++.+..++.
T Consensus 77 ~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 77 QAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh
Confidence 444444443 12333333333344443335566667777777742 2 5665555556666666553
No 165
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=31.23 E-value=4.3e+02 Score=29.99 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhHHHH--HHHHh-----cCCChhhHhhH--HHHhhhhhhccCcccccchHHHhhhc
Q 000705 952 PELQASAMLALCRFMIIDADYCDANLQLL--FTVVE-----SSPSEIVRSNC--TIALGDLAVRFPNLLEPWTENMYARL 1022 (1342)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~~~l~ll--f~~le-----~s~~~~vR~N~--vi~lgDL~~rfpnlvep~t~~ly~~L 1022 (1342)
..++..+.--|+++...+...- ..|.-+ +..+. ...+...+..+ -.++-|+|...|+---+-.+.|-.+|
T Consensus 52 ~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L 130 (234)
T PF12530_consen 52 LELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCL 130 (234)
T ss_pred hhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 4456677788888887776554 344422 22222 12223333333 35788999999996666688889999
Q ss_pred -CCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHh-cCCChhHHH-HHHH
Q 000705 1023 -KDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRV-EDEDQRISN-LAKL 1072 (1342)
Q Consensus 1023 -~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l-~D~d~~I~~-~a~~ 1072 (1342)
.+.++.++..+|--|++|--++.|-+.....-+++-+ .|..|.|.. ++.+
T Consensus 131 ~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l 183 (234)
T PF12530_consen 131 NQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSL 183 (234)
T ss_pred hccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 8999999999999999999888887777665555544 233344433 4443
No 166
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=30.82 E-value=82 Score=27.50 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 000705 651 AAMEFIVGTLVSKGDVSMSTISALWDFFC 679 (1342)
Q Consensus 651 ~sLEeLl~~~~~~~~I~~~vi~~LW~~~~ 679 (1342)
.+|.+.+.+|+..|.|+|....+.|..|-
T Consensus 13 ~aL~dtLDeli~~~~I~p~La~kVL~~FD 41 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQLAMKVLEQFD 41 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999984
No 167
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=30.60 E-value=1.2e+03 Score=30.45 Aligned_cols=214 Identities=10% Similarity=0.044 Sum_probs=139.7
Q ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcc-cchHHHHHHHHHHHHHcCCchhHHHH
Q 000705 208 VVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYD-FVVVHMADAVAGAEKKYADGSLATYL 286 (1342)
Q Consensus 208 ~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~e-hl~~~~Ae~l~~l~~~~~~~~l~~~i 286 (1342)
..|+||.+++.=. ..++++|.....-+|-..+--|-. .+-..++..|.-.| |.-..-+=++...++-++.=++...+
T Consensus 728 WMRIcfeLvd~Lk-s~nKeiRR~A~~tfG~Is~aiGPq-dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~l 805 (975)
T COG5181 728 WMRICFELVDSLK-SWNKEIRRNATETFGCISRAIGPQ-DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTL 805 (975)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHhhhhhhhhHHhhcCHH-HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHH
Confidence 5688998887432 257788887777777665554421 23445666665333 33334444455555555555566666
Q ss_pred HHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccch
Q 000705 287 IREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASS 366 (1342)
Q Consensus 287 lrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~ 366 (1342)
+.+-- .|+. .--...-|+.+-|+....+.+-+.+.....+|-+-|-.+--.=|.--..+|.+++.. .... ...
T Consensus 806 m~dY~--TPe~-nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln---c~gt-g~e 878 (975)
T COG5181 806 MSDYE--TPEA-NVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN---CPGT-GDE 878 (975)
T ss_pred Hhccc--Cchh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC---CCCc-ccH
Confidence 65432 2222 112334599999999999999999998888888888777777788777777777643 2211 111
Q ss_pred hhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHH
Q 000705 367 KSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLL 440 (1342)
Q Consensus 367 k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL 440 (1342)
. . --.++++|.--++|-+|+|=-++...+..+.. ++-. ..++.-...=|--.|+.|||.=-..+
T Consensus 879 d-a----~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~--~lg~---g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 879 D-A----AIHLLNLLWPNILEPSPHVIQSFDEGMESFAT--VLGS---GAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred H-H----HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH--Hhcc---HHHHHHHHHhccCchHHHHHHHHHHH
Confidence 1 2 46799999999999999987766666655544 2221 35677778889999999999765543
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.56 E-value=1.3e+03 Score=31.06 Aligned_cols=181 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCcccc------C
Q 000705 228 KDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVK------D 301 (1342)
Q Consensus 228 r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~------D 301 (1342)
|....+-|....++|--..+++ -|--++..|...|.++.++.-+|.-+.-+...+ - |
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~---------------Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d--d~~~v~dd 102 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQ---------------GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD--DSPEVMDD 102 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---------------ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC--cchhhccc
Q ss_pred ccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHH--------HhcCcccccchhhhhhhh
Q 000705 302 TVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAK--------AFKDIEGEASSKSVRLRT 373 (1342)
Q Consensus 302 t~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~--------~l~~~~~~~~~k~~~~~~ 373 (1342)
++-+..++..+.+.=-+.|. +|++|+.+++--.|.+|-.-|+.+..++.. ++..+.+
T Consensus 103 s~qsdd~g~~iae~fik~qd----~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~g----------- 167 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQD----NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMG----------- 167 (970)
T ss_pred chhhhHHHHHHHHHHHcCch----hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchh-----------
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc---------cCCchhHHHHHHHHHHHHH
Q 000705 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL---------EDKSAIVRKSALNLLVMML 444 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL---------~DKSs~VRK~AiqLL~~lL 444 (1342)
+..+.|+| +|..--+|.-+|=.+..|+..+ |--...-+.+-|-.|| -| +++|---++.||-.||
T Consensus 168 IS~lmdlL----~DsrE~IRNe~iLlL~eL~k~n--~~IQKlVAFENaFerLfsIIeeEGg~d-GgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 168 ISKLMDLL----RDSREPIRNEAILLLSELVKDN--SSIQKLVAFENAFERLFSIIEEEGGLD-GGIVVEDCLILLNNLL 240 (970)
T ss_pred HHHHHHHH----hhhhhhhchhHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHHH
Q ss_pred hhC
Q 000705 445 QHN 447 (1342)
Q Consensus 445 ~~n 447 (1342)
.+|
T Consensus 241 K~N 243 (970)
T KOG0946|consen 241 KNN 243 (970)
T ss_pred hhC
No 169
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=30.56 E-value=1.3e+02 Score=39.58 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=60.3
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHh
Q 000705 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILG 1094 (1342)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis 1094 (1342)
+.-|=..-+|+=+.||..+|.++..|+.+-==.=+--|.-..--|=||+-.|++-|-..+..|..|+||+= -++++-|-
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK-~Vvi~EIe 384 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK-IVVIDEIE 384 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce-eehHHHHH
Confidence 33344456888899999999999998876333223334556667789999999999999999999998873 24556566
Q ss_pred hcc
Q 000705 1095 KLC 1097 (1342)
Q Consensus 1095 ~Ls 1097 (1342)
+|.
T Consensus 385 r~~ 387 (988)
T KOG2038|consen 385 RLA 387 (988)
T ss_pred HHH
Confidence 654
No 170
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=30.50 E-value=7.2e+02 Score=32.87 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=110.7
Q ss_pred HHHHHHHHh------hcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhc--cCcccccchHHHhh-hcCCCCHH
Q 000705 958 AMLALCRFM------IIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVR--FPNLLEPWTENMYA-RLKDPSMA 1028 (1342)
Q Consensus 958 A~l~L~K~m------~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~r--fpnlvep~t~~ly~-~L~D~~~~ 1028 (1342)
+.+++-+-| +=++++=++.+|+|+.-+ ++.+..|..-++-.++=++-- +|.+=.+-.|.|+. +++-.++.
T Consensus 366 ~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~ 444 (700)
T KOG2137|consen 366 ALLFILENMDLLKEKTPPEEVKEKILPLLYRSL-EDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLY 444 (700)
T ss_pred chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchH
Confidence 345555555 335677788889999988 566666777776665533211 33333333444444 67788899
Q ss_pred HHHHHHHHHHHHHHccccc--cchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc----hhhhhhhHHHhhccCCCCC
Q 000705 1029 VRKNAVLVLSHLILNDMMK--VKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNN----PIYNLLPDILGKLCNQNLK 1102 (1342)
Q Consensus 1029 VR~~~l~vlthLIl~dmiK--vKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n----~iyn~~pdiis~Ls~~~~~ 1102 (1342)
||-|+|+.+.-|| .-+=| +=.++.-+++|+-=.||.|--..-..+..+..+.++ ..-|++|=+|-....+.++
T Consensus 445 vkvn~L~c~~~l~-q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 445 VKVNVLPCLAGLI-QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 9999999999998 22212 223445689999888999988888888888887666 4778899998888777899
Q ss_pred hhHHHHHHHHHHhhh
Q 000705 1103 TESFCNIMQLLIGFI 1117 (1342)
Q Consensus 1103 ~~~f~~I~~fLl~~i 1117 (1342)
-+.|-.+|+++=...
T Consensus 524 ~~Qy~~~m~~i~~ml 538 (700)
T KOG2137|consen 524 GEQYNKYMSEIRLML 538 (700)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999887654433
No 171
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=30.50 E-value=1.5e+02 Score=38.70 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=85.2
Q ss_pred HHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC--cccccchHHHhhhcCCCCHHHHHHHHH
Q 000705 958 AMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP--NLLEPWTENMYARLKDPSMAVRKNAVL 1035 (1342)
Q Consensus 958 A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfp--nlvep~t~~ly~~L~D~~~~VR~~~l~ 1035 (1342)
.++-++|..- ..+|-..-+|.|..++ ++++..||-=++..+=++.-..+ -+-|+-.||+...++|.|+.+|.+||.
T Consensus 314 pl~k~~k~ld-~~eyq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlk 391 (690)
T KOG1243|consen 314 PLFKLGKDLD-EEEYQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLK 391 (690)
T ss_pred HHHHhhhhcc-ccccccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHH
Confidence 3445555533 4458888889998888 89999999998888887777766 355677899999999999999999999
Q ss_pred HHHHHHHcccc---ccchhH-HHHHHHhcCCChhHHHHHHHHHHHH
Q 000705 1036 VLSHLILNDMM---KVKGYI-NEMAIRVEDEDQRISNLAKLFFHEL 1077 (1342)
Q Consensus 1036 vlthLIl~dmi---KvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1342)
.+.+|+- ++ -+-|.+ -.||+.-.|++..||--.-.|..++
T Consensus 392 sm~~La~--kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 392 SMAVLAP--KLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHHHHHh--hhchhhhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 9998872 22 244555 3566666788888776555554443
No 172
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=30.03 E-value=1.1e+03 Score=28.75 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCch
Q 000705 202 ENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGS 281 (1342)
Q Consensus 202 e~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~ 281 (1342)
++|...+.+-|...|++|+ ..|.+..+...+|... .|..+++ ..+.+.-+...+..+.+.++..+
T Consensus 85 ~d~~~~~i~~~i~~l~~~~--~~K~i~~~~l~~ls~Q--------~f~~~~~-----~~~~~~~l~~~l~~i~~~~~s~s 149 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPN--SPKSICTHYLWCLSDQ--------KFSPKIM-----TSDRVERLLAALHNIKNRFPSKS 149 (372)
T ss_pred hHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcC--------CCCCccc-----chhhHHHHHHHHHHhhccCCchh
Q ss_pred hHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHh----HHHHHhCCCchhHHHHHHHHHHHHHHHHh
Q 000705 282 LATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIG----VLILHFGGESYKIRNALVGVLGKLVAKAF 357 (1342)
Q Consensus 282 l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is----~L~~~Ld~esY~lRnavvevig~ii~~~l 357 (1342)
++.+-|. -+.+|-.+.|..|..+.. .|+..+=+..-.+|.+ ...+|..+...+
T Consensus 150 i~~erL~----------------------i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~-a~~l~~~~~~~l 206 (372)
T PF12231_consen 150 IISERLN----------------------IYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK-AISLLLEAKKCL 206 (372)
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHh
Q ss_pred cC--------cccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcc-hhhHH---HHHHHHHhhc
Q 000705 358 KD--------IEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVS-IGLWN---EVAEVAAGRL 425 (1342)
Q Consensus 358 ~~--------~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP-~~~~~---~v~~~av~RL 425 (1342)
.. .+.-+...... +-.+.+.+.|.+-+.+...|+ -|+|+|.-++-.=.-+ ...|. +.+.+.-.-.
T Consensus 207 ~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~--~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cF 283 (372)
T PF12231_consen 207 GPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYK--LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCF 283 (372)
T ss_pred ChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcc--hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHh
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000705 426 EDKSAIVRKSALNLLVMML 444 (1342)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL 444 (1342)
.+..+.||..|+.-=..++
T Consensus 284 n~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred cCCCHHHHHHHHHHHHHHH
No 173
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.90 E-value=1.3e+02 Score=30.11 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH--cCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHH
Q 000705 341 IRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER--CRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 418 (1342)
Q Consensus 341 lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR--~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~~v~ 418 (1342)
+|..+|.++|++.- ......+ ..|..++ +.+++.+ +-|-|||.|=.|+=++..||+.+. --
T Consensus 2 ~K~~lvrlianl~~---~~~~~Qd-----~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~--------eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCY---KNKEVQD-----LVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP--------EN 64 (102)
T ss_pred cHHHHHHHHHHHHh---CCHHHHH-----HHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH--------HH
Confidence 57889999999962 2222212 2233455 4445444 458999999999999999999862 12
Q ss_pred HHHHhhccCCchhHHHHHH
Q 000705 419 EVAAGRLEDKSAIVRKSAL 437 (1342)
Q Consensus 419 ~~av~RL~DKSs~VRK~Ai 437 (1342)
...++.|+-+.+ ++..++
T Consensus 65 Q~~I~~L~~~~~-~~~~~L 82 (102)
T PF09759_consen 65 QEFIAQLEPQGV-ADNEEL 82 (102)
T ss_pred HHHHHhccccCC-cchHHH
Confidence 234555555554 444443
No 174
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=29.35 E-value=1.3e+03 Score=30.76 Aligned_cols=53 Identities=11% Similarity=-0.048 Sum_probs=40.4
Q ss_pred cchhHHH-HHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcC
Q 000705 223 KDADTKD-ALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYA 278 (1342)
Q Consensus 223 K~~~~r~-~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~ 278 (1342)
+....|. .+-++|+.+- |+|..-+.-.+-++|++ -+-++.+|-++-.+...+.
T Consensus 192 ~~n~~r~~w~~rLL~lL~--~~~Psi~~~~~~~lL~~-A~~~~~l~lli~L~~~~~~ 245 (696)
T PF14838_consen 192 SLNRKRQQWAHRLLCLLS--SQHPSIAIEAISYLLTK-AQNPEHLALLIRLYAGLSV 245 (696)
T ss_pred ccchHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHh-cCCHHHHHHHHHHHhcccC
Confidence 3344444 4667777765 99988888888899988 7888888888888887776
No 175
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=28.83 E-value=4.8e+02 Score=30.41 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhh-hhHHHhhHhHHHHHhCCCchhHH
Q 000705 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRL-PKLISTNIGVLILHFGGESYKIR 342 (1342)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~-P~lvl~~is~L~~~Ld~esY~lR 342 (1342)
.-.|+.++.+++..+.++| ..|++-.+...+.+ .-.=.+....-+.+.. |+.-...++.|+.+|++..--+|
T Consensus 133 ~~~A~~La~~a~~~~~~~L-a~il~~ya~~~fr~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNL-ARILSSYAKGRFRD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHHHHHHHhCCCccH-HHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 5678889999999999988 56777776665432 1112333444455655 88889999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000705 343 NALVGVLGKLVAKA 356 (1342)
Q Consensus 343 navvevig~ii~~~ 356 (1342)
..+++++-.++..+
T Consensus 206 ~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 206 RKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999988553
No 176
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=28.55 E-value=1.4e+02 Score=31.98 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=61.5
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCH-------HHHHHhHHHHHHHHhc-CCChhhHhhHHHHhhhhh
Q 000705 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDA-------DYCDANLQLLFTVVES-SPSEIVRSNCTIALGDLA 1004 (1342)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~-------~~c~~~l~llf~~le~-s~~~~vR~N~vi~lgDL~ 1004 (1342)
.|...+..+... . .++....+|+.+|.++|-... +++-.|+|-|++-|=+ ..++.+..-++-++..+.
T Consensus 67 ~W~~~Ll~~L~~---~-~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 67 QWLRALLSILEK---P-DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred HHHHHHHHHHcC---C-CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334444444444 2 467889999999999997544 5667788877765522 222677888999999999
Q ss_pred hccCcccccchHHHhhh
Q 000705 1005 VRFPNLLEPWTENMYAR 1021 (1342)
Q Consensus 1005 ~rfpnlvep~t~~ly~~ 1021 (1342)
.+||+..-|+...+-..
T Consensus 143 ~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 143 PHHPTTFRPFANKIESA 159 (165)
T ss_pred HHCCccccchHHHHHHH
Confidence 99999999998776543
No 177
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=28.46 E-value=3.9e+02 Score=28.98 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=77.6
Q ss_pred HHhHHHHHHHHhcCCC--h---hhHhhHHHHhhhh----hhccCcccccchHHHhhhcCCC--CHHHHHHHHHHHHHHHH
Q 000705 974 DANLQLLFTVVESSPS--E---IVRSNCTIALGDL----AVRFPNLLEPWTENMYARLKDP--SMAVRKNAVLVLSHLIL 1042 (1342)
Q Consensus 974 ~~~l~llf~~le~s~~--~---~vR~N~vi~lgDL----~~rfpnlvep~t~~ly~~L~D~--~~~VR~~~l~vlthLIl 1042 (1342)
.+.+++|+.+.|.+.. | .+=+-.+-++-.| .+.|.++-+++...+..-.+-+ ++.|-+.||-+|=.+++
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 3568899999998875 2 2223333333333 3477777777777776654433 47788899999999988
Q ss_pred cc---ccccchhH--HHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000705 1043 ND---MMKVKGYI--NEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1043 ~d---miKvKg~l--~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1342)
|. +-.|+..+ ..+..+|.++|+.|+.-|-..+.-|-.|.
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 75 33555554 68999999999999999999998887776
No 178
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=28.35 E-value=1.2e+03 Score=30.11 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=75.1
Q ss_pred chhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchhhHHHHHHHHhccCCChhHHHH
Q 000705 1083 NPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKK 1162 (1342)
Q Consensus 1083 n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikK 1162 (1342)
+.+|.-+-.-+++++..++++++=++-..-+.--++=| |+=-++||||..+.+-. -..++|+|.+.+.
T Consensus 376 d~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE-~IgDiie~l~~~~~kk~-----------~~~~~fse~~~~e 443 (533)
T COG1283 376 DRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLE-HIGDIIERLLELADKKI-----------ANGRAFSEDGLEE 443 (533)
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH-----------hcCCCCCHHHHHH
Confidence 45555555666778877888888777666666555444 55566666777765541 2457889999888
Q ss_pred HHHhHHHHHHhhCchHHHHHHHHHHHHhhhcC--ChhhhHHHHHHHHHHHHHhhhchhHH
Q 000705 1163 LIESFKTYEHALSEDSVMDNFRNIINKSKKFA--KPEVKVCIEEFEEKLNKYHTEKKDQE 1220 (1342)
Q Consensus 1163 L~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~--k~e~K~~i~EfE~kl~~~~~~g~e~~ 1220 (1342)
|.+-+..--+- +...+..+.+.=...+ --|-|..+.+.|.+..+.|-++..+.
T Consensus 444 l~~l~~~~~~n-----~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~~k~H~~Rl~~g 498 (533)
T COG1283 444 LDALFALTLEN-----LRLAISVLVTGDLELARRLVERKKRVRRLERRSSKRHLDRLRDG 498 (533)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77666543222 2222222222211111 14567789999999999998776655
No 179
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.10 E-value=1.4e+02 Score=38.38 Aligned_cols=164 Identities=19% Similarity=0.217 Sum_probs=86.5
Q ss_pred HHHhcCCcCCCCChHHHHHHHHHHHHH---hhcCH-----------HHHHHhHHHHHHHHh---cCCChhhHhhHHHHhh
Q 000705 939 SKFCRNFSLMNKYPELQASAMLALCRF---MIIDA-----------DYCDANLQLLFTVVE---SSPSEIVRSNCTIALG 1001 (1342)
Q Consensus 939 ~~iC~~~~~~~~~~~l~~~A~l~L~K~---m~vs~-----------~~c~~~l~llf~~le---~s~~~~vR~N~vi~lg 1001 (1342)
..+|..+..- +++.|+.+|+++++-+ .|++. ...++-++-|...|. ...+..-+--++-|||
T Consensus 437 ~~L~~~~~~~-~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLg 515 (618)
T PF01347_consen 437 FELAKSPKVK-NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALG 515 (618)
T ss_dssp HHHHT-HHHH-T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHhCcccc-CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhh
Confidence 3446554433 5678999999888754 34442 222234567777776 4455677888899999
Q ss_pred hhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000705 1002 DLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1002 DL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1342)
-+. +|+.++.-.+.+...- +.+..+|-.|+.-|-++....==+++..+..+..=- .++.+||=.|=. -|-.-
T Consensus 516 N~g--~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~-~e~~EvRiaA~~---~lm~~- 587 (618)
T PF01347_consen 516 NLG--HPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNT-TEDPEVRIAAYL---ILMRC- 587 (618)
T ss_dssp HHT---GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-T-TS-HHHHHHHHH---HHHHT-
T ss_pred ccC--CchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCC-CCChhHHHHHHH---HHHhc-
Confidence 886 4776666555554443 557999999999998885444335555554443321 234556666622 22222
Q ss_pred CchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhh
Q 000705 1082 NNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFI 1117 (1342)
Q Consensus 1082 ~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i 1117 (1342)
|+=+..+-.|...|.. |.-..+..|..++|
T Consensus 588 -~P~~~~l~~i~~~l~~-----E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 588 -NPSPSVLQRIAQSLWN-----EPSNQVASFVYSHL 617 (618)
T ss_dssp ----HHHHHHHHHHHTT------S-HHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHhh-----CchHHHHHHHHHhc
Confidence 2333334444444432 33355556666555
No 180
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.97 E-value=1.8e+02 Score=29.64 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHc---CCCCchhhHHHHHHHHHHHhcCCcch--hhHH--HHHHHH----H--hhccCCchhHHHHHHHHH
Q 000705 374 KQAMLEILLERC---RDVSAYTRSRVLQVWAELCEEHSVSI--GLWN--EVAEVA----A--GRLEDKSAIVRKSALNLL 440 (1342)
Q Consensus 374 rd~lld~L~eR~---~D~nayVRskvLQ~~~~L~e~~~iP~--~~~~--~v~~~a----v--~RL~DKSs~VRK~AiqLL 440 (1342)
...+++.|..|+ ...+..+-.|||+++..|+.++.--. ..+. ..++.. . .+=.|.+..||+.|-+++
T Consensus 37 ~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~ 116 (125)
T PF01417_consen 37 CQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEIL 116 (125)
T ss_dssp HHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHH
Confidence 678999999999 56666677899999999999874211 1111 111111 0 122467778999998887
Q ss_pred HHH
Q 000705 441 VMM 443 (1342)
Q Consensus 441 ~~l 443 (1342)
.-|
T Consensus 117 ~lL 119 (125)
T PF01417_consen 117 ELL 119 (125)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 181
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=25.89 E-value=1.2e+03 Score=27.80 Aligned_cols=180 Identities=16% Similarity=0.191 Sum_probs=102.7
Q ss_pred hhhHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhh------cCHHHHHHhHHHHHHH
Q 000705 910 DTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMI------IDADYCDANLQLLFTV 983 (1342)
Q Consensus 910 d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~------vs~~~c~~~l~llf~~ 983 (1342)
+.|..+.....+. .-+..++.-++-.+++.-.+ +.+.-+..|.-+++=++. -+.++++.-.|.|.++
T Consensus 65 ~~l~~~l~~~~~~-----d~v~~~~~tL~~~~~k~lkk--g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~ 137 (309)
T PF05004_consen 65 EALIRALSSRYLP-----DFVEDRRETLLDALLKSLKK--GKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRI 137 (309)
T ss_pred HHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Confidence 3444444444443 44445555555555554333 222333333333333333 3689999999999999
Q ss_pred HhcC-CChhhHhhHHHHhhhhhhc-c--Ccccc---cchHHHhhhc--C----------CCCHHHHHHHHHHHHHHHH--
Q 000705 984 VESS-PSEIVRSNCTIALGDLAVR-F--PNLLE---PWTENMYARL--K----------DPSMAVRKNAVLVLSHLIL-- 1042 (1342)
Q Consensus 984 le~s-~~~~vR~N~vi~lgDL~~r-f--pnlve---p~t~~ly~~L--~----------D~~~~VR~~~l~vlthLIl-- 1042 (1342)
+.-+ ..+.+|..++.+||=+++- - +.-++ .-...+|... . .+++.|.-.||.--+.|+.
T Consensus 138 l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 138 LTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred HhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 8654 4578999999888876653 2 22222 2244344422 1 1246788888876666551
Q ss_pred cc-ccc--cchhHHHHHHHhcCCChhHHHHHHH---HHHHHhcc-CCchhhhhhhHHHhhc
Q 000705 1043 ND-MMK--VKGYINEMAIRVEDEDQRISNLAKL---FFHELSKK-GNNPIYNLLPDILGKL 1096 (1342)
Q Consensus 1043 ~d-miK--vKg~l~~~a~~l~D~d~~I~~~a~~---ff~eL~~K-~~n~iyn~~pdiis~L 1096 (1342)
.+ .++ +...+..+..+|.-+|..||--|-- |..|++.. +.+..|...++++..|
T Consensus 218 ~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l 278 (309)
T PF05004_consen 218 PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQL 278 (309)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHH
Confidence 11 121 3445567888999999998877655 56687774 2234566666665554
No 182
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=25.77 E-value=7.7e+02 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=24.5
Q ss_pred HhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHH
Q 000705 1058 RVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDIL 1093 (1342)
Q Consensus 1058 ~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdii 1093 (1342)
...|.-+.|+|-=+.|+...-.-= |.||+-+.|=+
T Consensus 50 ~~~~~~~TVSDTKr~F~~~yp~pI-psiYrrvvdEL 84 (283)
T PLN00047 50 AVTDVPPTVAETKAKFLKSYKRPI-PSIYSTVLQEL 84 (283)
T ss_pred hccCCCCcHHHHHHHHHHhCCCCC-cHHHHHHHHHH
Confidence 445666789887777777654444 89999877643
No 183
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=25.73 E-value=1.1e+02 Score=33.51 Aligned_cols=53 Identities=19% Similarity=0.388 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHhhC
Q 000705 393 RSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL-EDKSAIVRKSALNLLVMMLQHN 447 (1342)
Q Consensus 393 RskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL-~DKSs~VRK~AiqLL~~lL~~n 447 (1342)
|..|++.|.+|++.+.|---..-.....|..|. .++- ==+||+++|+.+|..-
T Consensus 18 k~~vi~~W~eiv~~~~i~av~~~~Fi~~aa~~f~q~~q--~~~Na~~~I~~il~~k 71 (181)
T PF11422_consen 18 KRNVISIWEEIVQNHGIFAVSLDFFIKKAANRFKQPSQ--SLKNAIQVIQYILTPK 71 (181)
T ss_dssp HHHHHHHHHHHHSSSS--EEEHHHHHHHHHHHHS-TTS---HHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHhcCCCcceeeHHHHHHHHHHHhccccc--cccchHHHHHHHHcCC
Confidence 789999999999976543333456678888888 5544 4589999999998853
No 184
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.64 E-value=1.1e+03 Score=32.76 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=50.8
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000705 382 LERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1342)
Q Consensus 382 ~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1342)
.-|.+|+-|-.|+--+|-+.--|.. +|--+.+ ..++-..=-|.||.+.||+..++-|..|.++
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~--yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKS--YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHh--ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4599999999999998876655543 5643333 5677777789999999999999999999887
No 185
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.34 E-value=8.4e+02 Score=26.31 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred cchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH
Q 000705 305 AENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER 384 (1342)
Q Consensus 305 ~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR 384 (1342)
+-.|..-|..+....|-.|+.+.+.|...||.=+|-=....+..+..+.-= .+- .... ||.++-.|...
T Consensus 72 ~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PL-i~~------s~~l----rd~lilvLRKa 140 (158)
T PF14676_consen 72 SSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPL-IKF------SPSL----RDSLILVLRKA 140 (158)
T ss_dssp -HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHH-HTT-------HHH----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-Hhc------CHHH----HHHHHHHHHHH
Confidence 357899999999999999999999999999987664444444444443211 111 1223 89999999888
Q ss_pred cCCCCchhhHHHHHHH
Q 000705 385 CRDVSAYTRSRVLQVW 400 (1342)
Q Consensus 385 ~~D~nayVRskvLQ~~ 400 (1342)
++-.-..+|.-|...+
T Consensus 141 mf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 141 MFSRELDARQMAVNGF 156 (158)
T ss_dssp TT-SSHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHh
Confidence 8877777887777654
No 186
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=25.27 E-value=2e+02 Score=35.22 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred hccCcccccchHHHhhhcCCCCHHHHHHHHHHHHH
Q 000705 1005 VRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSH 1039 (1342)
Q Consensus 1005 ~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlth 1039 (1342)
.-||.|-+.-.+.-+.+-.|.|..||++|+.=|--
T Consensus 53 k~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~ 87 (460)
T KOG2213|consen 53 KHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPL 87 (460)
T ss_pred hhCchhhhHHHHhhhccccccchhhHHHHHhccch
Confidence 34666666666777777889999999999864433
No 187
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=25.21 E-value=1.2e+02 Score=30.76 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=45.5
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhc---CCCCHHHHHHHHHHHHHHHHccccccchh
Q 000705 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARL---KDPSMAVRKNAVLVLSHLILNDMMKVKGY 1051 (1342)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L---~D~~~~VR~~~l~vlthLIl~dmiKvKg~ 1051 (1342)
....-...+--++.+++-+ .-...-.+.|..|| ..++..+..-||.+|-||+.||=-.+...
T Consensus 16 ~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~ 80 (125)
T PF01417_consen 16 PWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDE 80 (125)
T ss_dssp SSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHH
Confidence 3356667777777777655 44555688899999 88889999999999999999997644433
No 188
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=25.11 E-value=4.6e+02 Score=30.80 Aligned_cols=109 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred hHHHHHhhhccCCCCcCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHH----------
Q 000705 912 LSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLF---------- 981 (1342)
Q Consensus 912 i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf---------- 981 (1342)
+..+++ +|+... ..++.+|.|+..- +|-+.- .|+++|.+=+-.+|....--....|
T Consensus 156 v~~lr~-~lld~t---~~l~~Ry~amF~L--Rn~g~E--------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~ 221 (289)
T KOG0567|consen 156 VHELRA-ELLDET---KPLFERYRAMFYL--RNIGTE--------EAINALIDGLADDSALFRHEVAFVFGQLQSPAAIP 221 (289)
T ss_pred HHHHHH-HHHhcc---hhHHHHHhhhhHh--hccCcH--------HHHHHHHHhcccchHHHHHHHHHHHhhccchhhhH
Q ss_pred ----HHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000705 982 ----TVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHL 1040 (1342)
Q Consensus 982 ----~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1342)
.+++...+|-||.=+.=|||=.+- |.-++-|=.-+.|+++.||+.|...|.-+
T Consensus 222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 222 SLIKVLLDETEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
No 189
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.96 E-value=5.5e+02 Score=32.75 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=74.0
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHh---hcCCCccccCccccchHHHHHHHHHhhhhhHHH
Q 000705 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIG---RTNPKAYVKDTVGAENIGRFLVELADRLPKLIS 324 (1342)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~---~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl 324 (1342)
++-+|||.=..-.-+.+..|.+++.+..+| |++++-+|+++- ...|.- +|-..--|++.|+..|-...-.-=+
T Consensus 199 ~crsv~~aq~asp~ft~vyaALvAviNskf--P~IgElLlkrLilqf~r~f~R--nDk~~c~~~~kfiahLinq~VahEI 274 (739)
T KOG2140|consen 199 LCRSVMQAQAASPGFTPVYAALVAVINSKF--PQIGELLLKRLILQFKRSFRR--NDKVSCLNASKFIAHLINQQVAHEI 274 (739)
T ss_pred hHHHHHHHHhcCCCCcHHHHHHHHHHccCC--chHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655555556778888888887665 678888888853 245553 7888889999999888655433222
Q ss_pred hhHhHHHHHhCC---CchhHHHHHHHHHHHHHHHHhc
Q 000705 325 TNIGVLILHFGG---ESYKIRNALVGVLGKLVAKAFK 358 (1342)
Q Consensus 325 ~~is~L~~~Ld~---esY~lRnavvevig~ii~~~l~ 358 (1342)
-.+-.|.-+|+- .|.-+=-+++..||..+..+..
T Consensus 275 v~Leil~lLLe~PTddSvevaI~flkecGakL~~VSp 311 (739)
T KOG2140|consen 275 VALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSP 311 (739)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhCh
Confidence 233444555654 8888999999999998877644
No 190
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=24.79 E-value=2.4e+02 Score=29.08 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCCchhh--HHHHHHHHHHHhcCCc--chhhHH--HHHHHHH------hhccCCchhHHHHHHHHHH
Q 000705 374 KQAMLEILLERCRDVSAYTR--SRVLQVWAELCEEHSV--SIGLWN--EVAEVAA------GRLEDKSAIVRKSALNLLV 441 (1342)
Q Consensus 374 rd~lld~L~eR~~D~nayVR--skvLQ~~~~L~e~~~i--P~~~~~--~v~~~av------~RL~DKSs~VRK~AiqLL~ 441 (1342)
-...++.|..|+.|..-.-| .|+|+++..|+.++.- ....+. .+++... .+=.|.+..||+.|-+++.
T Consensus 35 ~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~ 114 (123)
T cd03571 35 FQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILE 114 (123)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHHH
Confidence 46788899999999866665 4899999999998732 111111 1111111 1224788999999998865
Q ss_pred H
Q 000705 442 M 442 (1342)
Q Consensus 442 ~ 442 (1342)
-
T Consensus 115 L 115 (123)
T cd03571 115 L 115 (123)
T ss_pred H
Confidence 4
No 191
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.68 E-value=8.7e+02 Score=29.59 Aligned_cols=161 Identities=15% Similarity=0.232 Sum_probs=89.0
Q ss_pred hHHHHHHHHhcCCCch----hHHHHHHHHHHHhhccCcchH-HHHhhhcchhcccCccHHHHHHHHHHHhhcCCChHHHH
Q 000705 561 STMPTLVQLMASSSAS----DVENTILLLMRCKQFQIDGAE-ACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETA 635 (1342)
Q Consensus 561 ~al~~i~~LL~Sk~~s----DV~EaI~Ff~~a~~f~I~~a~-~girkML~LVWskd~~I~~~vi~ay~~Ly~~~~~~~ia 635 (1342)
+++|.+.+-|.-..++ +...||.|+++=+-|.+.-+. -|--||+. + .+|--+++++.+ -|++|.
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia----~-e~~l~~L~Eal~-A~~dp~----- 257 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIA----K-EGILTALTEALQ-AGIDPD----- 257 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHH----H-hhhHHHHHHHHH-ccCCcc-----
Confidence 5778888777666555 334566666666666664332 23333321 0 123344444433 344432
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccC---hhhhhh-h
Q 000705 636 KNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSS---AAVLGS-H 711 (1342)
Q Consensus 636 ~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~---~~Iv~~-~ 711 (1342)
.|.++.. +++-++-=.|+.....+.|-|+ .|.....-....-.+.-.+.++.+|+-+|..+ ..||.. +
T Consensus 258 -~L~~l~~--tl~~lAVr~E~C~~I~e~GGl~-----tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg 329 (461)
T KOG4199|consen 258 -SLVSLST--TLKALAVRDEICKSIAESGGLD-----TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG 329 (461)
T ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHccCHH-----HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC
Confidence 2222221 2233333445555555555543 44555531011111233468899999999876 357764 6
Q ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHHHHhcc
Q 000705 712 LQDIIDIGFGRWAKVEPLLARTACIAIQRLS 742 (1342)
Q Consensus 712 l~~l~~iglg~~~~~D~~lar~~c~aL~~l~ 742 (1342)
++.|+...+.. ..||.++..+|.+++.|.
T Consensus 330 ~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 330 LDKIITLALRH--SDDPLVIQEVMAIISILC 358 (461)
T ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence 78887766654 579999999999998886
No 192
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=24.63 E-value=1.6e+03 Score=28.98 Aligned_cols=169 Identities=13% Similarity=0.154 Sum_probs=90.0
Q ss_pred CCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHh
Q 000705 278 ADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAF 357 (1342)
Q Consensus 278 ~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l 357 (1342)
|...-...|+..++.-. + ..|...+..+..+|..|+..+|.+=-.+=.++-..|+..=...-..++++..+.+..+.
T Consensus 26 Gd~~~Y~~L~~~l~~~~--~-~~d~~~~~~l~~~L~~L~~~Vs~Ld~~~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lv 102 (563)
T PF05327_consen 26 GDSSQYDELVEQLSDPS--E-SKDAISVSQLIRWLKALSSCVSLLDSSCKQLVEAILSLNWLGRDEDFVEAYIQFLINLV 102 (563)
T ss_dssp T--HHHHHHHHHHHS-T--T--TTS--HHHHHHHHHHHHHGGGGG-SCCHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcccc--c-CcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 34445566666664222 1 26888899999999999999999888866666666776333444555555555444433
Q ss_pred cCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhH--------------HHHHHHHHHHhcCCcchhhHHHHHHHHHh
Q 000705 358 KDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRS--------------RVLQVWAELCEEHSVSIGLWNEVAEVAAG 423 (1342)
Q Consensus 358 ~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRs--------------kvLQ~~~~L~e~~~iP~~~~~~v~~~av~ 423 (1342)
... -.--...+++|.+++.......-. ++..++.+|+ +.+|... ..+....+.
T Consensus 103 sa~----------~~yl~~vl~~LV~~f~p~~~~~~~~~~~~~~~~~~~~~~vH~~L~~Il--~lvP~s~-~~L~~~l~~ 169 (563)
T PF05327_consen 103 SAQ----------PKYLSPVLSMLVKNFIPPPSSIAEWPGCPPEKRREIYERVHDALQKIL--RLVPTSP-SFLIPILVQ 169 (563)
T ss_dssp HH-----------GGGHHHHHHHHHHGGGS-HHHHHH---------------HHHHHHHHH--HH-GGGH-HHHHHHHHH
T ss_pred Hhh----------HHHHHHHHHHHHHhccCCCccccccchhhhhhhhhhHHHHHHHHHHHH--HHcCCCH-HHHHHHHHH
Confidence 221 111567778888887766555322 4666666666 4577654 455666555
Q ss_pred hccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHH
Q 000705 424 RLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLD 463 (1342)
Q Consensus 424 RL~DKSs~VRK~AiqLL~~lL~~nPfg~~L~~~~~~~~Le 463 (1342)
+.=-+....+.. +..+..+|.=--|.+.|...-|+--.+
T Consensus 170 ~FP~~~~~~~~~-~~Yv~NlL~l~~Y~P~L~~~Il~lIi~ 208 (563)
T PF05327_consen 170 NFPHKRKSKDEH-VNYVRNLLRLTEYCPELRSDILSLIIE 208 (563)
T ss_dssp TS--TTS-HHHH-HHHHHHHHHHHCC-GGGHHHHHHHHHH
T ss_pred cCcCCCCChHHH-HHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 543332222211 123444444445567777777765444
No 193
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=24.29 E-value=3e+02 Score=26.99 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=44.6
Q ss_pred HHHhHHHHHHhhCchHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHH---hhhchhH-HHHHHHHHHh
Q 000705 1163 LIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKY---HTEKKDQ-EATTRNAQIH 1229 (1342)
Q Consensus 1163 L~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~k~e~K~~i~EfE~kl~~~---~~~g~e~-~~~~~~~~~~ 1229 (1342)
+.|......+.+.+.+.|..|+..-.+... .|+.+.++++|..+=.++ ...|... +...++.+..
T Consensus 2 I~~~a~eL~~~I~~s~ey~~~~~a~~~l~~--d~e~~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~ 70 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEYKRYKAAEEALEA--DPEAQKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQEL 70 (108)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHH
Confidence 355666777888888999999888877766 899999999999854444 4445443 3333333333
No 194
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=24.16 E-value=2.9e+02 Score=28.46 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=52.0
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH---HHHHHHHhhccC---CchhHHHHHHHHHHHHHhhCC
Q 000705 375 QAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN---EVAEVAAGRLED---KSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 375 d~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~~iP~~~~~---~v~~~av~RL~D---KSs~VRK~AiqLL~~lL~~nP 448 (1342)
..-+..|..|+..-|+.|.-.||-+|--++.+..-|..... +.+...+.-+.+ ....||+.++.++...=..-|
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567888999999999999999999999988655542211 222233333333 467899999999988755333
No 195
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=23.63 E-value=1.4e+03 Score=29.05 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHhhcC-----HHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchH----HHhhhc
Q 000705 952 PELQASAMLALCRFMIID-----ADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTE----NMYARL 1022 (1342)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs-----~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~----~ly~~L 1022 (1342)
..=+..|+--|-+++|-. .+|..+=|-.+|.+|..+.++.+|.=++=.|+-+|...|.-+..++. .+-.+=
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 455778888899999988 78888889999999999999999999999999999999988777754 444555
Q ss_pred CCCCHHHHHH----HHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CchhhhhhhHHHhhc
Q 000705 1023 KDPSMAVRKN----AVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG-NNPIYNLLPDILGKL 1096 (1342)
Q Consensus 1023 ~D~~~~VR~~----~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~-~n~iyn~~pdiis~L 1096 (1342)
.|..+.|=+- |+.+++... +--.|.-+..||...|..+.-++-...++|-..= ..-+-|++||+.=-+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~------P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHL------PLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhC------chhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 6666644332 333333211 1223344666666677666666655555544432 144666666665443
No 196
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=23.42 E-value=4.7e+02 Score=34.12 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=90.2
Q ss_pred chHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc
Q 000705 306 ENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC 385 (1342)
Q Consensus 306 Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~ 385 (1342)
+++++-+..|..- |+- ..-+..|++.|-.++-.+-.+++.++.|+|.+... -..+=- +.+++|.|++-+
T Consensus 402 ~s~srsV~aL~tg-~~~-~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~-----~kskfl----~~ngId~l~s~~ 470 (678)
T KOG1293|consen 402 KSFSRSVSALRTG-LKR-NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSN-----LKSKFL----RNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHcC-Ccc-chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhccc-----HHHHHH----HcCcHHHHHHHh
Confidence 4444444444443 322 22345677777778888889999999999987632 112223 788999999999
Q ss_pred CCCCchhhHHHHHHHHHHHhcCC-----cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000705 386 RDVSAYTRSRVLQVWAELCEEHS-----VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1342)
Q Consensus 386 ~D~nayVRskvLQ~~~~L~e~~~-----iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1342)
-|.-+.+|.+++-++.+++=+.. -|+++ --+...+.=.+|+---|--+++|||..|.-
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k--i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK--IPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH--hhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999875321 22222 224455666899999999999999998764
No 197
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.13 E-value=92 Score=25.15 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.5
Q ss_pred hHHHHHHHHhcCCChhhHhhHHHHhhhhh
Q 000705 976 NLQLLFTVVESSPSEIVRSNCTIALGDLA 1004 (1342)
Q Consensus 976 ~l~llf~~le~s~~~~vR~N~vi~lgDL~ 1004 (1342)
-+|.|.++|. ++++.|+.+++-+++=|+
T Consensus 13 ~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 4789999995 999999999999998775
No 198
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=23.00 E-value=9.4e+02 Score=32.75 Aligned_cols=145 Identities=20% Similarity=0.170 Sum_probs=97.0
Q ss_pred CChHHHHHHHHHHHHHhh---cCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhc----
Q 000705 950 KYPELQASAMLALCRFMI---IDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARL---- 1022 (1342)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~---vs~~~c~~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L---- 1022 (1342)
.-|.|-.-|.++++||-- +++.+-..-+....+.+-.+..|.+|.-++.+.+=.| =|.++-|.-|.+-..|
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHc
Confidence 345555578888888854 4677888888888888888888889999999888777 5666677766665543
Q ss_pred CCCCHHHHHHHHHHHHHHHHcc-----ccccchh--H-HHHHHHhcCCChhHHHHHHHHHHHHhcc---CCchhhhhhhH
Q 000705 1023 KDPSMAVRKNAVLVLSHLILND-----MMKVKGY--I-NEMAIRVEDEDQRISNLAKLFFHELSKK---GNNPIYNLLPD 1091 (1342)
Q Consensus 1023 ~D~~~~VR~~~l~vlthLIl~d-----miKvKg~--l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K---~~n~iyn~~pd 1091 (1342)
.+.+..|=---+-+|+.-+.=| +.+-|=+ + .-+++.-. ||-|.++++-+|.||... ..+..--.+|.
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPs 617 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIAANYGPMQERLIPS 617 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 4555555444444555443221 2221111 1 12334444 458999999999998764 22778889999
Q ss_pred HHhhccC
Q 000705 1092 ILGKLCN 1098 (1342)
Q Consensus 1092 iis~Ls~ 1098 (1342)
+||-|..
T Consensus 618 lisil~~ 624 (1005)
T KOG2274|consen 618 LISVLQL 624 (1005)
T ss_pred HHHHHcC
Confidence 9999964
No 199
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=5.7e+02 Score=33.77 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=91.1
Q ss_pred HhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHH-HHHHHHcCCCCchhhH
Q 000705 316 ADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAML-EILLERCRDVSAYTRS 394 (1342)
Q Consensus 316 ae~~P~lvl~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~ll-d~L~eR~~D~nayVRs 394 (1342)
++-.-++|-+|.-.|..+|.++.-.+|.--++-+..++...-.- . . +.. .-.++ .+.-+=.+|..+-||.
T Consensus 211 ~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~--i-P--~~i----~~~ll~kI~d~~a~dt~s~VR~ 281 (1005)
T KOG1949|consen 211 AEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM--I-P--PTI----LIDLLKKITDELAFDTSSDVRC 281 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH--c-C--HHH----HHHHHHHHHHHhhhccchheeh
Confidence 35566788999999999999999999997776666665432110 0 0 011 22222 2223445799999999
Q ss_pred HHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCC---CCCChhHHHHHH
Q 000705 395 RVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFG---PQLRIASFEATL 462 (1342)
Q Consensus 395 kvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPfg---~~L~~~~~~~~L 462 (1342)
.|...+..|..+ -+.|+ +..++....-.|.|+|.-||=++.++|..+ .++.|. .-.+++.+-.+|
T Consensus 282 svf~gl~~~l~np~sh~~--le~~Lpal~~~l~D~se~VRvA~vd~ll~i-k~vra~~f~~I~~~d~~l~~L 350 (1005)
T KOG1949|consen 282 SVFKGLPMILDNPLSHPL--LEQLLPALRYSLHDNSEKVRVAFVDMLLKI-KAVRAAKFWKICPMDHILVRL 350 (1005)
T ss_pred hHhcCcHHHHcCccchhH--HHHHHHhcchhhhccchhHHHHHHHHHHHH-HhhhhhhhhccccHHHHHHHH
Confidence 999999999886 34554 346666555569999999999999999875 445443 344444444433
No 200
>PHA00438 hypothetical protein
Probab=22.83 E-value=2.3e+02 Score=27.05 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHH
Q 000705 209 VRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIR 288 (1342)
Q Consensus 209 ~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilr 288 (1342)
..|+-+++|||.-+ +.+-.+..+.| --+||.+.-.++-.+..|+..-+--.++|-++.-+ +.+..+|.
T Consensus 2 l~pI~~~l~np~Di--Pdvpraa~eyL---qvrfNasYl~~sG~i~~lR~~G~SE~~IaGfl~Gl-------~yAs~~ld 69 (81)
T PHA00438 2 LTPIKHLLENPNDI--PDVPRAAAEYL---QVRFNASYLEQSGEIRLLRQAGYSEAFIAGFLAGL-------QYASRTLD 69 (81)
T ss_pred cchHHHHhcCCccc--ccccHHHHHHH---HHHHhHHHHHHhhhHHHHHHcCCcHHHHHHHHHHH-------HHHHHHHH
Confidence 35788999999744 55666666666 34789999899999999999888889999998876 24455555
Q ss_pred HH
Q 000705 289 EI 290 (1342)
Q Consensus 289 EI 290 (1342)
|+
T Consensus 70 em 71 (81)
T PHA00438 70 EM 71 (81)
T ss_pred HH
Confidence 54
No 201
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.72 E-value=1.6e+03 Score=28.41 Aligned_cols=193 Identities=14% Similarity=0.089 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhc-----cchhhh
Q 000705 174 PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKY-----HYIEQS 248 (1342)
Q Consensus 174 ~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y-----~h~~~~ 248 (1342)
+++..+|..|..++.-+-..+|. .|..-+.-.+|..|-+ .++..+|...+++|.-+.+.- +.+.-+
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWe------q~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~a 372 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWE------QHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIA 372 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHH------HHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHH
Confidence 56666666666666666555662 3333333333333322 256677777888887776542 222222
Q ss_pred HHHHHHHHh-hcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHH--HHHHHHhhhhhHHH-
Q 000705 249 CASIMHLIH-KYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGR--FLVELADRLPKLIS- 324 (1342)
Q Consensus 249 ~~~IiqlL~-~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~--FL~~Lae~~P~lvl- 324 (1342)
.-++++.=. ..+......+|.+......|+.-+=+.-|-.-|-. . | -|++++. .+.+|-++.+.--+
T Consensus 373 i~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt---~----D--~~~~~~~iKm~Tkl~e~l~~EeL~ 443 (516)
T KOG2956|consen 373 ICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT---A----D--EPRAVAVIKMLTKLFERLSAEELL 443 (516)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc---C----c--chHHHHHHHHHHHHHhhcCHHHHH
Confidence 223333211 23333444555555555555443322222222211 1 1 2344333 35666665554322
Q ss_pred ----hhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC
Q 000705 325 ----TNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR 386 (1342)
Q Consensus 325 ----~~is~L~~~Ld~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~ 386 (1342)
.-+..+++-+|+.|-++|.++|=|+..|+..+=- +..+.+.. +.-.++-.++++=..|..
T Consensus 444 ~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~-~~mePhL~-~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 444 NLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM-EEMEPHLE-QLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH-HhhhhHhh-hccHHHHHHHHHHHHHhh
Confidence 2345667779999999999999999999876521 22222211 112225567777666654
No 202
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=22.21 E-value=7.9e+02 Score=25.97 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=67.0
Q ss_pred HHHHhhhcchhcccCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC--CCC-------
Q 000705 597 EACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG--DVS------- 667 (1342)
Q Consensus 597 ~~girkML~LVWskd~~I~~~vi~ay~~Ly~~~~~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~--~I~------- 667 (1342)
++--..++.|.=++|..||...++|.-.- =++.-..-..||-.|+.+.+.. ++|..-....+ .|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~-k~~~l~pY~d~L~~Lldd~~fr-----deL~~f~~~~~~~~I~~ehR~~l 89 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW-KDPYLTPYKDNLENLLDDKTFR-----DELTTFNLSDESSVIEEEHRPEL 89 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CcHHHHhHHHHHHHHcCcchHH-----HHHHhhcccCCcCCCCHHHHhHH
Confidence 33334466777778888888888886542 1111122248999999887643 23433333332 243
Q ss_pred -HHHHHHHHHHhhccCCCCCH-HhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCC
Q 000705 668 -MSTISALWDFFCFNVSGTTP-EKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGR 722 (1342)
Q Consensus 668 -~~vi~~LW~~~~~~~~~~s~-~~~r~Al~lL~Mia~~~~~Iv~~~l~~l~~iglg~ 722 (1342)
|-++..|+..........+. ..||.| ||+.++.-..+ .+..++++++++
T Consensus 90 ~pvvlRILygk~~~~~~~~~~~~~rR~a--IL~~L~~l~~~----El~~Fl~l~~~p 140 (141)
T PF07539_consen 90 MPVVLRILYGKMQSRKGSGSKKASRRAA--ILRFLAGLSEE----ELGLFLDLMLEP 140 (141)
T ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHH--HHHHHhCCCHH----HHHHHHHHHhcc
Confidence 56777888777533333333 377888 77877765443 445667766654
No 203
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=22.14 E-value=2e+03 Score=29.17 Aligned_cols=122 Identities=19% Similarity=0.272 Sum_probs=64.4
Q ss_pred HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-H
Q 000705 975 ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-N 1053 (1342)
Q Consensus 975 ~~l~llf~~le~s~~~~vR~N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~ 1053 (1342)
+++|.++.+|..++.+.+..+++..+.-|+..-.|. ..|- +-+.|..|-.. -+|.+..+ .
T Consensus 411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-----qlm~----------~g~gL~~L~~r----a~~~~D~lLl 471 (708)
T PF05804_consen 411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-----QLMC----------EGNGLQSLMKR----ALKTRDPLLL 471 (708)
T ss_pred chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-----HHHH----------hcCcHHHHHHH----HHhcccHHHH
Confidence 469999999988888888888888888887644332 1111 11222222211 13444444 3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhc---cCCchhhhhhhHHHhhccCCCCChhHHHHHHH--HHHhhh
Q 000705 1054 EMAIRVEDEDQRISNLAKLFFHELSK---KGNNPIYNLLPDILGKLCNQNLKTESFCNIMQ--LLIGFI 1117 (1342)
Q Consensus 1054 ~~a~~l~D~d~~I~~~a~~ff~eL~~---K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~--fLl~~i 1117 (1342)
.|.+-+..-++..+.+---|...|++ .+ . =.-.+.++++-|++-.++..++..+++ .|++||
T Consensus 472 KlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~-~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L 538 (708)
T PF05804_consen 472 KLIRNISQHDGPLKELFVDFIGDLAKIVSSG-D-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWL 538 (708)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-C-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHH
Confidence 45554544443333332223332221 11 1 234577777777755445556666653 344554
No 204
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.09 E-value=1.3e+03 Score=26.77 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=45.8
Q ss_pred CChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchh
Q 000705 1062 EDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIR 1141 (1342)
Q Consensus 1062 ~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~r 1141 (1342)
.++.+.+.|+..|.++...+.+ +-+ .++.+-...++.....+= + +.-.++|..++...+++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~-~~~------------~i~~dlr~~v~~~~~~~g--~---~~~~~~l~~~~~~~~~~~ 202 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDS-PES------------SIPPDLRWAVYCAGVRNG--D---EEEWDFLWELYKNSTSPE 202 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT--TTS------------TS-HHHHHHHHHHHTTS-------HHHHHHHHHHHHTTSTHH
T ss_pred cchhHHHHHHHHHHHHhcCCcc-ccc------------ccchHHHHHHHHHHHHHh--h---HhhHHHHHHHHhccCCHH
Confidence 6777888887777776554211 000 334444455555555552 1 223666666777777777
Q ss_pred hHHHHHHHHhccCCChhHHHHHHH
Q 000705 1142 QWEYISYCLSQLAFTEKGMKKLIE 1165 (1342)
Q Consensus 1142 qwrdiafcLslL~~~ek~ikKL~e 1165 (1342)
+.+.+..||+.-+ ++..++++++
T Consensus 203 ~k~~~l~aLa~~~-d~~~~~~~l~ 225 (324)
T PF11838_consen 203 EKRRLLSALACSP-DPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHTT-S--HHHHHHHHH
T ss_pred HHHHHHHhhhccC-CHHHHHHHHH
Confidence 7777777777655 4444455444
No 205
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=21.45 E-value=1.5e+03 Score=27.90 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCch---hhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhh------hhhh
Q 000705 1052 INEMAIRVEDEDQRISNLAKLFFHELSKKGNNP---IYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIK------KDKQ 1122 (1342)
Q Consensus 1052 l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~---iyn~~pdiis~Ls~~~~~~~~f~~I~~fLl~~i~------KdKq 1122 (1342)
+..+..++.=+|++=|+..+.|++.+-.|-++- |...+-+++.++-......---..+++++-++|+ |+.|
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh 214 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH 214 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH
Q ss_pred HHHHHHHHHhhhhcccchhh-HHHHHHHHhcc-----CCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHh-hhcCC
Q 000705 1123 MEALVEKLCNRFSGVTDIRQ-WEYISYCLSQL-----AFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKS-KKFAK 1195 (1342)
Q Consensus 1123 ~e~LveKLc~Rf~~~~~~rq-wrdiafcLslL-----~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~-kk~~k 1195 (1342)
..+..+.+-.+..+..-.. +..++||+.++ .+.+..++.|+-.|| ..+..=---|...+... .....
T Consensus 215 -~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP-----~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 215 -KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWP-----KTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp -HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS------SS-HHHHHHHHHHHHHHHTT--H
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCC-----CCCchhHHHHHHHHHHHHHhcCH
Q ss_pred hhhhHHHHHHHHHHHHHhhhchhHHHHHHHH
Q 000705 1196 PEVKVCIEEFEEKLNKYHTEKKDQEATTRNA 1226 (1342)
Q Consensus 1196 ~e~K~~i~EfE~kl~~~~~~g~e~~~~~~~~ 1226 (1342)
.+....+.-+=.+|.+|- ..++-..+.+|
T Consensus 289 ~~f~~i~~~lf~~la~ci--~S~h~qVAErA 317 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCI--SSPHFQVAERA 317 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH--TSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCHHHHHHH
No 206
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=21.44 E-value=9.9e+02 Score=25.33 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccc
Q 000705 225 ADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVG 304 (1342)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g 304 (1342)
+..+..+.+.+...+....+-..+-++++..|..+.+ .+-+.++..+.++|... + ...+ ..+-.-
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~--~f~~~ll~~~~~~f~~~------~------e~~~-~~~~~~ 95 (200)
T smart00543 31 KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNP--DFGSLLLERLQEEFEKG------L------ESEE-ESDKQR 95 (200)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------H------HHHH-HHhhhh
Confidence 3455555555555444444444444555555554332 33333333333333211 0 0001 134455
Q ss_pred cchHHHHHHHHHhh---hhhHHHhhHhHHHHHhCCC-------chhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhH
Q 000705 305 AENIGRFLVELADR---LPKLISTNIGVLILHFGGE-------SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTK 374 (1342)
Q Consensus 305 ~Kn~s~FL~~Lae~---~P~lvl~~is~L~~~Ld~e-------sY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~r 374 (1342)
.++...||.+|-.. .+..++.-+..++..+..+ +..+=+.++..+|..+.. ...+.. -
T Consensus 96 ~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~--------~~~~~~----~ 163 (200)
T smart00543 96 RLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER--------EKSPKL----L 163 (200)
T ss_pred HHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC--------cccHHH----H
Confidence 68888998886543 3446666666666655442 223334455556655422 222333 5
Q ss_pred HHHHHHHHHHcCCC
Q 000705 375 QAMLEILLERCRDV 388 (1342)
Q Consensus 375 d~lld~L~eR~~D~ 388 (1342)
+.+++.++.-+.+.
T Consensus 164 ~~~l~~l~~~~~~~ 177 (200)
T smart00543 164 DEILERLQDYLLKK 177 (200)
T ss_pred HHHHHHHHHHHhcc
Confidence 77888888777764
No 207
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=21.32 E-value=3.6e+02 Score=28.43 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=73.1
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhc-CCChhHH
Q 000705 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVE-DEDQRIS 1067 (1342)
Q Consensus 995 N~vi~lgDL~~rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~-D~d~~I~ 1067 (1342)
..++-+||+.-.-++--..=...|=.+|..+++.|...||.+|--++.|.=.++.-++ -+|.+++. .+++.|+
T Consensus 23 ~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk 102 (142)
T cd03569 23 ASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVR 102 (142)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHH
Confidence 4566778887655554344467788899999999999999999999999655554444 45777665 5778899
Q ss_pred HHHHHHHHHHhccCC-chhhhhhhHHHhhcc
Q 000705 1068 NLAKLFFHELSKKGN-NPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1068 ~~a~~ff~eL~~K~~-n~iyn~~pdiis~Ls 1097 (1342)
+-+...+.+++.--+ .+=|..+.++-..|.
T Consensus 103 ~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 103 QKILELIQAWALAFRNKPQLKYVVDTYQILK 133 (142)
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 888888888776422 345555555555553
No 208
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=21.31 E-value=1.4e+03 Score=27.09 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhH
Q 000705 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNI 327 (1342)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~Dt~g~Kn~s~FL~~Lae~~P~lvl~~i 327 (1342)
...++++.+.. .+++.-+++++.-+..+-.+..-....+.-++.-.+.- .+..+.+-+..|-..|++.-|.+----+
T Consensus 6 ~~~~~L~~l~~-~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 6 LHASMLSSLPS-SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHhCCC-cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHH
Q ss_pred hHHHHHhC----CCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHH---------------------
Q 000705 328 GVLILHFG----GESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILL--------------------- 382 (1342)
Q Consensus 328 s~L~~~Ld----~esY~lRnavvevig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~--------------------- 382 (1342)
..+...|- +..-..=.+++..+..++.+...+.-........ .+.+-+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~-----~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (339)
T PF12074_consen 83 LCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGEL-----VGAYVLLALSSWKLDKIDSKNISFWSLAL 157 (339)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccH-----HHHHHHHHhccccchhhhhhhhhhhhhcc
Q ss_pred ---------HHcCCC--CchhhHHHHHHHHHHHh--cCCcchhhHHHHHHHHHhhccCC--chhHHHHHHHHHHHHHhhC
Q 000705 383 ---------ERCRDV--SAYTRSRVLQVWAELCE--EHSVSIGLWNEVAEVAAGRLEDK--SAIVRKSALNLLVMMLQHN 447 (1342)
Q Consensus 383 ---------eR~~D~--nayVRskvLQ~~~~L~e--~~~iP~~~~~~v~~~av~RL~DK--Ss~VRK~AiqLL~~lL~~n 447 (1342)
+|++-. ..-.-.-+++.+..+.. .....-.....+....+-=+-.. +..|||.|++.+++++..+
T Consensus 158 ~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 158 DPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred CCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Q ss_pred C
Q 000705 448 P 448 (1342)
Q Consensus 448 P 448 (1342)
|
T Consensus 238 ~ 238 (339)
T PF12074_consen 238 P 238 (339)
T ss_pred h
No 209
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=20.84 E-value=1.3e+03 Score=27.87 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=59.5
Q ss_pred CcccccchHHHhhhcCC-CCHHHHHHHHHHHHHHHHcc--cccc-ch-hHHHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 000705 1008 PNLLEPWTENMYARLKD-PSMAVRKNAVLVLSHLILND--MMKV-KG-YINEMAIRVEDEDQRISNLAKLFFHELSKKGN 1082 (1342)
Q Consensus 1008 pnlvep~t~~ly~~L~D-~~~~VR~~~l~vlthLIl~d--miKv-Kg-~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~ 1082 (1342)
|.++-| ..|..... +++..|| +|+.++-.|+|= .+.. |. ++.-|---+ ..=.+-.+.||.+++.--
T Consensus 196 PAIvsP---~~f~l~~~~p~~~~rR-~L~lIAKvLQnlAN~~~F~KE~~M~~lN~fi----~~~~~~~~~Fl~~i~~~~- 266 (329)
T cd05130 196 PAIVSP---YEAGILDKKPPPRIER-GLKLMSKILQSIANHVLFTKEEHMRPFNDFV----KSNFDAARRFFLDIASDC- 266 (329)
T ss_pred hhhCCc---cccCCCCCCCCHHHHh-HHHHHHHHHHHHhccCccCCcHHHHHHHHHH----HHHHHHHHHHHHHHccCC-
Confidence 555554 44444433 5777887 566677666431 1111 22 222222222 222233445788877532
Q ss_pred chhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchhhHHHHHHHHhcc
Q 000705 1083 NPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQL 1153 (1342)
Q Consensus 1083 n~iyn~~pdiis~Ls~~--~~~~~~f~~I~~fLl~~i~KdKq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL 1153 (1342)
.. || ..+++ -++..+.-.+-++|..+++ +-...|.. .|=..+...|+|+-++-.|..|
T Consensus 267 ~~-----~d---~~~~p~~yis~~ei~~lH~ll~~h~~--~i~~~l~s---~~~~~~~~~~~~~~~~~~l~~~ 326 (329)
T cd05130 267 PT-----SD---NVNHSLSFISDGNVLALHRLLWNNQE--KIGQYLSS---NRDHKAVGRRPFDKMATLLAYL 326 (329)
T ss_pred CC-----cc---ccCCCceeccHHHHHHHHHHHHHHHH--HHHHHHhc---cccccccChhHHHHHHHHHHHc
Confidence 22 11 23333 3455555577777777763 22222222 2223334667888776655543
No 210
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=20.45 E-value=1e+03 Score=25.14 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=47.3
Q ss_pred cCccccchHHHHHHHHHhh---hhhHHHhhHhHHHHHhCC--------CchhHHHHHHHHHHHHHHHHhcCcccccchhh
Q 000705 300 KDTVGAENIGRFLVELADR---LPKLISTNIGVLILHFGG--------ESYKIRNALVGVLGKLVAKAFKDIEGEASSKS 368 (1342)
Q Consensus 300 ~Dt~g~Kn~s~FL~~Lae~---~P~lvl~~is~L~~~Ld~--------esY~lRnavvevig~ii~~~l~~~~~~~~~k~ 368 (1342)
.+..-.++...|+.+|-.. .++.++.-+..|+..... .+..+=+.++..+|.-+. .....+.
T Consensus 98 ~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~-------~~~~~~~ 170 (209)
T PF02854_consen 98 SSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLE-------NSEESPK 170 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHH-------HCHHHHH
T ss_pred HHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHh-------cCCCchh
Confidence 3455678888999988764 677777777777777655 334444556666776653 0122222
Q ss_pred hhhhhHHHHHHHHHHHcCC
Q 000705 369 VRLRTKQAMLEILLERCRD 387 (1342)
Q Consensus 369 ~~~~~rd~lld~L~eR~~D 387 (1342)
. -+.+++.+..-...
T Consensus 171 ~----l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 171 A----LDEIFERLQKYANS 185 (209)
T ss_dssp H----HHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHh
Confidence 2 56677776665554
Done!