Query 000705
Match_columns 1342
No_of_seqs 216 out of 322
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 21:55:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000705.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_13-17//hhsearch_pdb/000705hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 105.1 50.0 724 174-1116 63-821 (852)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 88.3 48.4 360 668-1095 358-758 (852)
3 1u6g_C TIP120 protein, CAND1; 1.0 1 1 83.0 66.0 157 931-1097 888-1053(1230)
4 1b3u_A Protein (protein phosph 1.0 1 1 81.8 38.9 139 932-1078 440-586 (588)
5 2vgl_B AP-2 complex subunit be 1.0 1 1 78.5 41.8 160 264-448 32-192 (591)
6 1u6g_C TIP120 protein, CAND1; 1.0 1 1 75.5 61.1 98 951-1052 944-1045(1230)
7 2bpt_A Importin beta-1 subunit 1.0 1 1 71.8 53.1 112 328-447 182-297 (861)
8 1qgr_A Protein (importin beta 1.0 1 1 68.6 52.7 111 328-446 175-289 (876)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 68.2 60.0 58 686-743 382-440 (861)
10 1qgr_A Protein (importin beta 1.0 1 1 67.0 54.7 112 328-448 131-249 (876)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=105.09 Aligned_cols=724 Identities=14% Similarity=0.147 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf 4699999999998434434323888850208978999999974033224604499999999999995316--40315989
Q 000705 174 PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYH--YIEQSCAS 251 (1342)
Q Consensus 174 ~~r~~iL~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~ir~~if~iL~~~vk~y~--h~~~~~~~ 251 (1342)
.-|.-+...+.+.+. +-|..- .++--..+-..+...|..+ +..+|..+..+++..++... +-...-..
T Consensus 63 ~vR~~a~~~Lkn~i~----~~w~~~--~~~~~~~ik~~ll~~l~~~----~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~ 132 (852)
T 4fdd_A 63 PTRSLSGLILKNNVK----AHFQNF--PNGVTDFIKSECLNNIGDS----SPLIRATVGILITTIASKGELQNWPDLLPK 132 (852)
T ss_dssp HHHHHHHHHHHHHTT----TSGGGC--CHHHHHHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHHHTTTTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHH----HCCCCC--CHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 799999999999898----744779--9999999999999987499----899999999999999986481356899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997530032499999999999982995159999999860098752357411141999999998430569984286999
Q 000705 252 IMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLI 331 (1342)
Q Consensus 252 IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lil~~is~L~ 331 (1342)
+++++...+. .. ...+-.++..|+...+..+..+.. .+. +-.-+..|.
T Consensus 133 L~~~l~~~~~---~~-------------r~~al~~L~~i~~~~~~~~~~~~~-~~~---------------~~~il~~l~ 180 (852)
T 4fdd_A 133 LCSLLDSEDY---NT-------------CEGAFGALQKICEDSAEILDSDVL-DRP---------------LNIMIPKFL 180 (852)
T ss_dssp HHHHHSCSSH---HH-------------HHHHHHHHHHHHHHHTTHHHHCSS-SSC---------------HHHHHHHHT
T ss_pred HHHHHCCCCH---HH-------------HHHHHHHHHHHHHHHHHHHCHHHH-CCH---------------HHHHHHHHH
T ss_conf 9998709998---99-------------999999999999985787563431-332---------------999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 87279754577999999999998872076442102446445499999999987098992051799999999974387-65
Q 000705 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS-VS 410 (1342)
Q Consensus 332 ~~Ld~esY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~a-iP 410 (1342)
..|..++..+|.+.+.+++.++.. ....... ..+.++..|.....|.++.||..+++++..|++... .-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~------~~~~~~~----~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIIS------RTQALML----HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTT------TCHHHHT----SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHC------CCHHHHH----HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 985679789999999999999864------6387998----899999999987179977899999999999998577989
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3219999999973306882468799999999999509999998835789889999999-624599988776457999878
Q 000705 411 IGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKK-LNGLEPDIHSESITDGLPSDR 489 (1342)
Q Consensus 411 l~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~~~~~~Le~~~~~-L~~l~~~~~~~~~~~~~~~~~ 489 (1342)
..+...++......+.|+...||..|+.++..+...... ...+..-+...... ++.|. ..+.+ .
T Consensus 251 ~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p~ll~~l~-~~e~d---------~ 315 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-----KDVLVRHLPKLIPVLVNGMK-YSDID---------I 315 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-----HHHHTTTHHHHHHHHHHHTS-CCHHH---------H
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHHHCC-CCHHH---------H
T ss_conf 988999999999870699689999999999998603657-----98878889889999998757-86767---------9
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876899-9866514577677521110027898754454567899888001599-99999999999999999985999999
Q 000705 490 GTCNGD-GEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQ-TRALVASLEAGLRFSKCVSSTMPTLV 567 (1342)
Q Consensus 490 ~~l~~~-~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k-~~~~v~yl~dai~F~~~i~~ai~~i~ 567 (1342)
...+.+ +|+++.+++ . ..-.+.+ -......+..... -..+...+|.+.
T Consensus 316 ~~~~~d~~ed~~~dd~--~---------------------------~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~ 365 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDT--I---------------------------SDWNLRKCSAAALDVLANVYR-DELLPHILPLLK 365 (852)
T ss_dssp HHHHC-----------------------------------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCC--C---------------------------CCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_conf 9866984432224564--0---------------------------111699999999999987461-878999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98238980159999999998863367615889852011112467118999999999963599928999999998851692
Q 000705 568 QLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNI 647 (1342)
Q Consensus 568 ~LL~Skt~sDV~EaI~Ff~~a~~fgI~~a~~girkML~LVWskd~~V~~~vi~ay~~Lyl~~~~~~ia~nLi~L~~~as~ 647 (1342)
++| .+.+..+|++.+.++..+--... . .+
T Consensus 366 ~~l-------------------------------------~~~~~~~R~aa~~alg~i~~~~~-----~----~~----- 394 (852)
T 4fdd_A 366 ELL-------------------------------------FHHEWVVKESGILVLGAIAEGCM-----Q----GM----- 394 (852)
T ss_dssp HHH-------------------------------------TCSSHHHHHHHHHHHHHTTTTTH-----H----HH-----
T ss_pred HHH-------------------------------------CCCCHHHHHHHHHHHHHHHHCCH-----H----HH-----
T ss_conf 985-------------------------------------59988999999999999986356-----8----89-----
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHH---HCCCC
Q ss_conf 22568999999998389999989999999860248999989679999999997325713-534219999995---12888
Q 000705 648 GDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAA-VLGSHLQDIIDI---GFGRW 723 (1342)
Q Consensus 648 ~dl~sLEeli~~~~~~~~i~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~-iv~~~ld~l~~i---glg~~ 723 (1342)
...++.+ +..|..... +..+.-|..|...|+-++..-+. .....+..++.. ++.
T Consensus 395 --~~~l~~~--------------l~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-- 452 (852)
T 4fdd_A 395 --IPYLPEL--------------IPHLIQCLS----DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-- 452 (852)
T ss_dssp --GGGHHHH--------------HHHHHHHTT----CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT--
T ss_pred --HHHHHHH--------------HHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--
T ss_conf --9879999--------------999998717----998899999999999999886110478999999999999985--
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHH
Q ss_conf 8886799999999998403522100024672469999999882677799714999999999999507----994899999
Q 000705 724 AKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIH----PTPETLAVD 799 (1342)
Q Consensus 724 ~~~D~~lar~~c~aL~~l~~~~k~~~rl~~~~~if~~L~~~l~~~~~~~~~W~~~ae~aI~~Iy~l~----~~Pd~i~~~ 799 (1342)
..++.....+|.+|..+.......+ .|.-..++..|...+... +..=..++-.+|.+|.... ..|+ .+..
T Consensus 453 -d~~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~~---~~~~~~~~~~ai~~l~~~~~~~~~~~~-~~~~ 526 (852)
T 4fdd_A 453 -DSNKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKY---QHKNLLILYDAIGTLADSVGHHLNKPE-YIQM 526 (852)
T ss_dssp -CSSHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHGGGGCCHH-HHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHH
T ss_conf -8988899999999999999736766-767999999999999883---747999999999999997424313678-9999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 99999997603469999998877778899987657689999999889999879889888999-99979999963433100
Q 000705 800 LVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCE-IRKQKIKKEKMIADDQN 878 (1342)
Q Consensus 800 iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsrllfivGhVAlk~lv~lE~~~~~-lKrr~~~~ek~~~~k~~ 878 (1342)
++..+.... .....++ ... ...+.-+-.++..+.....-|++.+... ++.-+..-.+.......
T Consensus 527 l~p~l~~~~-~~l~d~~-------------~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~ 591 (852)
T 4fdd_A 527 LMPPLIQKW-NMLKDED-------------KDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 591 (852)
T ss_dssp HHHHHHHHH-HHSCTTC-------------TTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHCCCCC-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 889999998-7333046-------------999-9999999999999748679889999999999999999999875338
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 24689988999996102443145530122323657998851204898767522--2245799988108767778857999
Q 000705 879 IHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLI--GHCASFLSKFCRNFSLMNKYPELQA 956 (1342)
Q Consensus 879 ~~s~~~~~~~~~~~~~~~~Elgl~taeD~~~e~i~~i~E~eLl~g~~~~~~LL--~~f~Plv~~iC~~p~~~~~~~~l~~ 956 (1342)
.. .. + ..+.++ ..++ .+.+..+... + |+.. ..++ ..+.|++.....+ .++.+|.
T Consensus 592 ~~--------~~-~-~~d~~~-~~~~----l~~l~~l~~~-l--~~~~-~~~~~~~~~~~~l~~~l~~-----~~~~vr~ 647 (852)
T 4fdd_A 592 PD--------QY-E-APDKDF-MIVA----LDLLSGLAEG-L--GGNI-EQLVARSNILTLMYQCMQD-----KMPEVRQ 647 (852)
T ss_dssp TT--------TS-C-CCCTHH-HHHH----HHHHHHHHHH-H--GGGG-HHHHHTCCHHHHHHHHTTC-----SSHHHHH
T ss_pred CC--------CC-C-CCCCHH-HHHH----HHHHHHHHHH-H--HHHH-HHHHCCCCHHHHHHHHHCC-----CCHHHHH
T ss_conf 86--------66-8-876119-9999----9999789998-7--4769-9883677189999998389-----9844999
Q ss_pred HHHHHHHHHHHCCHHHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHCCCCC--
Q ss_conf 99999998840179999----88399999998329984567667998622310157655412387----864228999--
Q 000705 957 SAMLALCRFMIIDADYC----DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN----MYARLKDPS-- 1026 (1342)
Q Consensus 957 ~A~l~L~K~m~vs~~~c----~~~l~llf~~le~s~~~~vR~N~ii~lgDl~~rfpnlvep~~~~----ly~~L~D~~-- 1026 (1342)
.|..+++.+...-..-. ..-+|.+.+.+ ...++.+|.|++-++|+++.+.+.-+.||.+. ++..|.+++
T Consensus 648 ~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l-~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~ 726 (852)
T 4fdd_A 648 SSFALLGDLTKACFQHVKPCIADFMPILGTNL-NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTP 726 (852)
T ss_dssp HHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC-CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999816888987999999999876-94206899999999999999711767878999999999985799887
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH----HHCC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHCCC
Q ss_conf 8999999999999877055321115988777----7248-97359999999999984038831251266---78862058
Q 000705 1027 MAVRKNAVLVLSHLILNDMMKVKGYINEMAI----RVED-EDQRISNLAKLFFHELSKKGNNPIYNLLP---DILGKLCN 1098 (1342)
Q Consensus 1027 ~~VR~~al~vlthLil~dmiK~Kg~l~~~a~----~l~D-~d~~I~~la~~ff~eL~~K~~n~iyn~lp---diis~Ls~ 1098 (1342)
..|++|+...+..|....---++.++.+++. .+-+ .|..-+.-|-.-|..+-...|+.+...|+ +.|....+
T Consensus 727 ~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~ 806 (852)
T 4fdd_A 727 KTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN 806 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
T ss_conf 20778899999999986889767558999999999865366607999999999999986918688889999999870689
Q ss_pred CCCCHHHHHHHHHHHHHH
Q ss_conf 898925799999998752
Q 000705 1099 QNLKTESFCNIMQLLIGF 1116 (1342)
Q Consensus 1099 ~~~~~~~f~~I~~fLl~~ 1116 (1342)
+ + .+.+..+..++..
T Consensus 807 ~--~-~~l~~~~~~~l~~ 821 (852)
T 4fdd_A 807 P--K-DDLRDMFCKILHG 821 (852)
T ss_dssp C--C-HHHHHHHHHHHHH
T ss_pred C--C-HHHHHHHHHHHHH
T ss_conf 9--7-8999999999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=88.32 Aligned_cols=360 Identities=13% Similarity=0.100 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999986024899998967999999999732571353421999999512888888679999999999840352210
Q 000705 668 MSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKK 747 (1342)
Q Consensus 668 ~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~ 747 (1342)
+.++..+-+... +.....|.+|+..||-++...++.+...+..++..-+......++.+...+|.+|.+++.....
T Consensus 358 ~~l~~~l~~~l~----~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 358 PHILPLLKELLF----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999855----9988999999999999986356889987999999999871799889999999999999988611
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0024672469999999882677799714999999999999507994----899999999999976034699999988777
Q 000705 748 KLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTP----ETLAVDLVKKSLSAVFDYVGGEEPHNGIDC 823 (1342)
Q Consensus 748 ~~rl~~~~~if~~L~~~l~~~~~~~~~W~~~ae~aI~~Iy~l~~~P----d~i~~~iIk~~~~~~f~~~~~~~~~~~~~~ 823 (1342)
....+.-..++..|...+. +.. ..+.+.|..++-.+++.- ......|+..+...+ ..
T Consensus 434 ~~~~~~~~~ll~~L~~~L~-----d~~-~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~------------ 494 (852)
T 4fdd_A 434 QPPDTYLKPLMTELLKRIL-----DSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SK------------ 494 (852)
T ss_dssp SCTTTTHHHHHHHHHHHHT-----CSS-HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HH------------
T ss_pred CHHHHHHHHHHHHHHHHHH-----CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------------
T ss_conf 0478999999999999985-----898-8899999999999999736766767999999999999-88------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7889998765768999999988999987------9889888999999799999634331002468998899999610244
Q 000705 824 VGTSMPTSVQVSKLGRYLFILSHIAMNQ------LVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINA 897 (1342)
Q Consensus 824 ~~~~~~~~~~~~~LsrllfivGhVAlk~------lv~lE~~~~~lKrr~~~~ek~~~~k~~~~s~~~~~~~~~~~~~~~~ 897 (1342)
.....+.-++-.+|.++-.. --|++.+...+...... . + ..+....
T Consensus 495 --------~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~----------l-------~--d~~~~~~- 546 (852)
T 4fdd_A 495 --------YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM----------L-------K--DEDKDLF- 546 (852)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH----------S-------C--TTCTTHH-
T ss_pred --------HCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------C-------C--CCCHHHH-
T ss_conf --------3747999999999999997424313678999988999999873----------3-------3--0469999-
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH---HHHHHHHHHC-----------CCCCC-CCCHHHHHHHHHHH
Q ss_conf 314553012232365799885120489876752222---4579998810-----------87677-78857999999999
Q 000705 898 ELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGH---CASFLSKFCR-----------NFSLM-NKYPELQASAMLAL 962 (1342)
Q Consensus 898 Elgl~taeD~~~e~i~~i~E~eLl~g~~~~~~LL~~---f~Plv~~iC~-----------~p~~~-~~~~~l~~~A~l~L 962 (1342)
...+.+..++.. .| ..++.. ..|.++.+.. +|..+ ..+..++.++.-++
T Consensus 547 ---------~~~~~l~~i~~~---~g----~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 547 ---------PLLECLSSVATA---LQ----SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp ---------HHHHHHHHHHHH---HG----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf ---------999999999999---74----86798899999999999999999998753388666887611999999999
Q ss_pred HHHHHCCH----HHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHCCCCCHHHHHH
Q ss_conf 98840179----999--88399999998329984567667998622310157655412387----864228999899999
Q 000705 963 CRFMIIDA----DYC--DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN----MYARLKDPSMAVRKN 1032 (1342)
Q Consensus 963 ~K~m~vs~----~~c--~~~l~llf~~le~s~~~~vR~N~ii~lgDl~~rfpnlvep~~~~----ly~~L~D~~~~VR~~ 1032 (1342)
+.+.-.-. .+. ...+++++..+ ..+.+.||..+...+||++..++.-+.||.+. +...|.++++.||++
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 7899987476998836771899999983-899844999999999999998168889879999999998769420689999
Q ss_pred HHHHHHHHHHC---CCCCCCHHH-HHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999998770---553211159-88777724897--35999999999998403883125126678862
Q 000705 1033 AVLVLSHLILN---DMMKVKGYI-NEMAIRVEDED--QRISNLAKLFFHELSKKGNNPIYNLLPDILGK 1095 (1342)
Q Consensus 1033 al~vlthLil~---dmiK~Kg~l-~~~a~~l~D~d--~~I~~la~~ff~eL~~K~~n~iyn~lpdiis~ 1095 (1342)
|+..+.++... ++-..=+.+ ..+...+.+++ ..+++-|-..+..|..+.|+.+-.+++.++-.
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
T ss_conf 999999999971176787899999999998579988720778899999999986889767558999999
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=83.03 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22245799988108767778857999999999988401-----7999988399999998329984567667998622310
Q 000705 931 IGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-----DADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAV 1005 (1342)
Q Consensus 931 L~~f~Plv~~iC~~p~~~~~~~~l~~~A~l~L~K~m~v-----s~~~c~~~l~llf~~le~s~~~~vR~N~ii~lgDl~~ 1005 (1342)
+..|.|.+....... +..|..+.-+|....-. -..|.++-++.|+..++ +.+..+|+++.-++|-|+.
T Consensus 888 ~~~~lp~ll~~l~~~------~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~-~~~~~~r~~~a~~lg~l~~ 960 (1230)
T 1u6g_C 888 LPEYLPFVLQEITSQ------PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRNVVAECLGKLTL 960 (1230)
T ss_dssp HHHHHHHHHHHHHSC------GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC-CSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHC
T ss_conf 998899999987266------032498899999998238766677669999999998733-8304468999988756650
Q ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC---CHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 1576554123878642289998999999999999877055321---1159-88777724897359999999999984038
Q 000705 1006 RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV---KGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1342)
Q Consensus 1006 rfpnlvep~~~~ly~~L~D~~~~VR~~al~vlthLil~dmiK~---Kg~l-~~~a~~l~D~d~~I~~la~~ff~eL~~K~ 1081 (1342)
..| ++..|.+-.+|.|+++.+|.+++..+.+++..-.-.+ -.++ ..++.++.|+|+.||..|-..+..+++..
T Consensus 961 ~~~---~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~ 1037 (1230)
T 1u6g_C 961 IDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037 (1230)
T ss_dssp SSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC
T ss_pred CCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 676---88889999985699788999999999999706823358989998999998648985879999999999998428
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 8312512667886205
Q 000705 1082 NNPIYNLLPDILGKLC 1097 (1342)
Q Consensus 1082 ~n~iyn~lpdiis~Ls 1097 (1342)
|..+..++++++-.|-
T Consensus 1038 ~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 1038 PSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp GGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 5768977988989999
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=81.84 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-CHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2245799988108767778857999999999988401-799-99883999999983299845676679986223101576
Q 000705 932 GHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-DAD-YCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1342)
Q Consensus 932 ~~f~Plv~~iC~~p~~~~~~~~l~~~A~l~L~K~m~v-s~~-~c~~~l~llf~~le~s~~~~vR~N~ii~lgDl~~rfpn 1009 (1342)
..+.|.+.....+ .++.+|.+|+.+|++++.. ..+ +...-+|.+...+ .++++.+|..++-++|.++-.++.
T Consensus 440 ~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 440 EKLNSLCMAWLVD-----HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp HHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999988259-----8199999999999999999684457888999999983-189879999999999999976698
Q ss_pred --CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHC---CCCCCCHHH-HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf --5541238786422899989999999999998770---553211159-88777724897359999999999984
Q 000705 1010 --LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN---DMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELS 1078 (1342)
Q Consensus 1010 --lvep~~~~ly~~L~D~~~~VR~~al~vlthLil~---dmiK~Kg~l-~~~a~~l~D~d~~I~~la~~ff~eL~ 1078 (1342)
..+...|.+...|+|+++.||.+++..|..+... +++ ...+ .-+..++.|+|++++..|..-+..+.
T Consensus 514 ~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999998667899862799999999999998653645--9999999998747996669999999999763
No 5
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=78.53 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999982995159999999860098752357411141999999998430569984286999872797545779
Q 000705 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRN 343 (1342)
Q Consensus 264 ~~~Ae~v~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lil~~is~L~~~Ld~esY~lRn 343 (1342)
..+..++..+...++.+.+..++++-+ ++ .|..-=|....++..+++..|...+--+..|..-|.+++..+|.
T Consensus 32 ~~~~kli~~~~~G~d~~~~~~~vi~l~-----~s--~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~ 104 (591)
T 2vgl_B 32 EAVKKVIAAMTVGKDVSSLFPDVVNCM-----QT--DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 104 (591)
T ss_dssp HHHHHHHHHHHTTCCCGGGHHHHHHTT-----SS--SCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH-----CC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999987998688999999881-----79--98999999999999986658068999999999776999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHH
Q ss_conf 99999999998872076442102446445499999999987098992051799999999974387653219-99999997
Q 000705 344 ALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLW-NEVAEVAA 422 (1342)
Q Consensus 344 aVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~aiPl~~~-~~v~~~av 422 (1342)
..+.++|++. .. +. ...++..+..-..|.++|||.+|..++.+++... |-... ..++....
T Consensus 105 ~AL~~L~~i~-----~~-------~~----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 105 LAVRTMGCIR-----VD-------KI----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLR 166 (591)
T ss_dssp HHHHHHHTCC-----SG-------GG----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC-----HH-------HH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--HHHCCCCCHHHHHH
T ss_conf 9999987589-----07-------78----9999999999817998589999999999998519--24144635899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 33068824687999999999995099
Q 000705 423 GRLEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 423 ~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
..|.|+...||.+|+..|..+...+|
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99679984399999999999976378
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=75.50 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHCCCCC
Q ss_conf 85799999999998840179999883999999983299845676679986223101576554123----87864228999
Q 000705 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWT----ENMYARLKDPS 1026 (1342)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~ii~lgDl~~rfpnlvep~~----~~ly~~L~D~~ 1026 (1342)
+..+|..+.-|||+++.... +..+|.|.+.+ +++++.+|..++.+++.++-.-|.-++++. +.+..+|.|++
T Consensus 944 ~~~~r~~~a~~lg~l~~~~~---~~l~p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~ 1019 (1230)
T 1u6g_C 944 EEGTRNVVAECLGKLTLIDP---ETLLPRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPD 1019 (1230)
T ss_dssp STTHHHHHHHHHHHHHHSSG---GGTHHHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSS
T ss_pred CHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 04468999988756650676---88889999985-699788999999999999706823358989998999998648985
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 89999999999998770553211159
Q 000705 1027 MAVRKNAVLVLSHLILNDMMKVKGYI 1052 (1342)
Q Consensus 1027 ~~VR~~al~vlthLil~dmiK~Kg~l 1052 (1342)
+.||+.++..|..++.+.---+.+++
T Consensus 1020 ~~vr~~a~~~l~~~~~~~~~~~~~~l 1045 (1230)
T 1u6g_C 1020 LNVRRVALVTFNSAAHNKPSLIRDLL 1045 (1230)
T ss_dssp THHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 87999999999999842857689779
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=71.83 Aligned_cols=112 Identities=7% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999872797--54577999999999998872076442102446445499999999987098992051799999999974
Q 000705 328 GVLILHFGGE--SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCE 405 (1342)
Q Consensus 328 s~L~~~Ld~e--sY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e 405 (1342)
..+...+..+ +..+|.+.+.+++.++... . +..+. ... ++.++..|.+...|.+.-+|..+++++..+++
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~-~~~~~--~~~----~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFI-K-NNMER--EGE----RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-H-HHHTS--HHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H-HHCCC--HHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999841579998789999999999999999-9-87067--668----99999999998659988999999999999999
Q ss_pred CCC-CCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 387-6532199-99999973306882468799999999999509
Q 000705 406 EHS-VSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQHN 447 (1342)
Q Consensus 406 ~~a-iPl~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~n 447 (1342)
... .-..+.. .++......+.|....||..|+.++..+....
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98899999889999999999873772789999999999999878
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=68.64 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=79.2
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999872797--54577999999999998872076442102446445499999999987098992051799999999974
Q 000705 328 GVLILHFGGE--SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCE 405 (1342)
Q Consensus 328 s~L~~~Ld~e--sY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e 405 (1342)
..+...+..+ +..+|.+.+.+++.++... . ...+. ... ++.++..|.+...|.+.-+|..+++++..+++
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~-~~~~~--~~~----~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFT-K-ANFDK--ESE----RHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-H-HHHTS--HHH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H-HHHHH--HHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999861679998899999999999999999-9-98871--789----99999999987179988999999999999999
Q ss_pred CCC-CCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 387-6532199-9999997330688246879999999999950
Q 000705 406 EHS-VSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1342)
Q Consensus 406 ~~a-iPl~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1342)
... .-..+.. .++......+.|....||..|+.++..+...
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8699999887789999999996387349999999999999887
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=68.24 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9896799999999973257-135342199999951288888867999999999984035
Q 000705 686 TPEKSRAALSVLCMAAKSS-AAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQ 743 (1342)
Q Consensus 686 s~~~~r~Al~lL~Mia~~~-~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~ 743 (1342)
....|.+|+..|+.++... +..+...++.++...+......++.+-..+|.+|.++..
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72699999999999985998788899899999999988289959999999999999998
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=67.03 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=51.9
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHH
Q ss_conf 6999872797--545779999999999988720764421024464454999999999870989--920517999999999
Q 000705 328 GVLILHFGGE--SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDV--SAYTRSRVLQVWAEL 403 (1342)
Q Consensus 328 s~L~~~Ld~e--sY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~--nayVRskvLQ~~~~L 403 (1342)
..|...++++ +..+|.+.+.+++.++... .++ ..... ...++..|..-+.|. +.-||..+++++..+
T Consensus 131 ~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~-~~~----~~~~~----~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~ 201 (876)
T 1qgr_A 131 PQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPE----QLQDK----SNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201 (876)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CHH----HHGGG----HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC-CHH----HHHHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999987088987999999999999998745-876----67867----99999999986167999889999999999999
Q ss_pred HHCCC--C-CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 74387--6-532199999999733068824687999999999995099
Q 000705 404 CEEHS--V-SIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1342)
Q Consensus 404 ~e~~a--i-Pl~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1342)
+..-. + .......++......+.|...-||+.|++.|..++..+|
T Consensus 202 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999887178999999999987179988999999999999999869
Done!