Query 000706
Match_columns 1342
No_of_seqs 369 out of 2365
Neff 3.8
Searched_HMMs 29240
Date Tue Mar 26 22:24:45 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000706.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_13-17//hhsearch_pdb/000706hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b9d_A Serine/threonine-protei 1.0 1 1 469.8 26.3 261 2-262 22-286 (350)
2 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 461.0 20.9 260 2-261 30-299 (311)
3 3ubd_A Ribosomal protein S6 ki 1.0 1 1 455.3 17.7 260 2-261 22-290 (304)
4 4fih_A Serine/threonine-protei 1.0 1 1 453.8 26.1 254 4-260 74-331 (346)
5 4fie_A Serine/threonine-protei 1.0 1 1 453.3 28.0 254 4-260 151-408 (423)
6 3hyh_A Carbon catabolite-derep 1.0 1 1 450.3 24.6 256 3-259 12-269 (275)
7 3v5w_A G-protein coupled recep 1.0 1 1 439.2 27.4 260 1-262 186-459 (689)
8 4b99_A Mitogen-activated prote 1.0 1 1 439.0 27.0 256 4-259 54-351 (398)
9 4g3f_A NF-kappa-beta-inducing 1.0 1 1 434.7 21.6 245 2-253 56-310 (336)
10 3uto_A Twitchin; kinase, muscl 1.0 1 1 430.5 27.9 256 3-261 156-419 (573)
No 1
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=469.78 Aligned_cols=261 Identities=30% Similarity=0.572 Sum_probs=240.9
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 88788999997325937999999956995999999615799978999999999999935999811588888708959999
Q 000706 2 GVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVV 81 (1342)
Q Consensus 2 dIDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyIV 81 (1342)
.+++|++++.||+|+||.||+|+++.+++.||+|++.+........+.+.+|++++++++|||||++++++++++.+|||
T Consensus 22 sme~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiV 101 (350)
T 4b9d_A 22 SMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIV 101 (350)
T ss_dssp CCCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 51255884797027793999999889998999999865878979999999999999877998989199999989999999
Q ss_pred EECCC-CCHHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCEE
Q ss_conf 94369-8848898609--99999999999999999999866099250388998379758970899533632124577401
Q 000706 82 TEFAQ-GELFEILEDD--KCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVV 158 (1342)
Q Consensus 82 MEYve-GSLlDlLek~--k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~sss~~ 158 (1342)
|||++ |+|++++... ..++|..++.|+.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+........
T Consensus 102 mEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 181 (350)
T 4b9d_A 102 MDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVEL 181 (350)
T ss_dssp EECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHH
T ss_pred EECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCCCEEECCCCCCEEECCCCCC
T ss_conf 94889983999999738999978999999999999999999899151359789979878999897646521440688541
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC-CCCCCCCHHHHHHHHHHC
Q ss_conf 2023588876881212038998777532046679998838999999839999999842999-999999988999999811
Q 000706 159 LRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPV-KYPDEMSPNFKSFLKGLL 237 (1342)
Q Consensus 159 ~ssivGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~pl-elP~eISpeLkdLIkkML 237 (1342)
....+||+.|+|||++.+..|+.++||||+||++|+|++|+.||.+.+..+.+.++..... +.+..+|+++++||.+||
T Consensus 182 ~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L 261 (350)
T 4b9d_A 182 ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLF 261 (350)
T ss_dssp HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 01457883603999987999895999999999999999787998996999999999808999997557999999999985
Q ss_pred CCCCCCCCCHHHHHCCCCCCCCHHH
Q ss_conf 0199999999899729576343145
Q 000706 238 NKVPQNRLTWSALLEHPFVKETSDE 262 (1342)
Q Consensus 238 skDPeKRPTaeELLkHPfFke~~ee 262 (1342)
++||++|||+.|+++||||++..+.
T Consensus 262 ~~dP~~R~s~~e~l~hp~~~~~~~~ 286 (350)
T 4b9d_A 262 KRNPRDRPSVNSILEKGFIAKRIEK 286 (350)
T ss_dssp CSSGGGSCCHHHHHTSHHHHTTGGG
T ss_pred CCCHHHCCCHHHHHCCHHHHCCCCC
T ss_conf 5896679089999639976167876
No 2
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=461.04 Aligned_cols=260 Identities=29% Similarity=0.534 Sum_probs=238.8
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
Q ss_conf 88788999997325937999999956995999999615799-97899999999999993599981158888870895999
Q 000706 2 GVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGK-SEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCV 80 (1342)
Q Consensus 2 dIDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~-seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyI 80 (1342)
..++|++++.||+|+||.||+|+++.+++.||+|++.+... .....+.+.+|++++++++|||||+++++|++++.+|+
T Consensus 30 ~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yi 109 (311)
T 4aw0_A 30 RPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYF 109 (311)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
T ss_conf 85236898898316484999999999998999999888887797899999999999986799898919999973898999
Q ss_pred EEECCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCC--CE
Q ss_conf 994369-884889860999999999999999999999866099250388998379758970899533632124577--40
Q 000706 81 VTEFAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSAN--TV 157 (1342)
Q Consensus 81 VMEYve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~ss--s~ 157 (1342)
||||++ |+|++++.+.+.++|..++.|+.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.+... ..
T Consensus 110 vmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~ 189 (311)
T 4aw0_A 110 GLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQA 189 (311)
T ss_dssp EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCC
T ss_pred EEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCCCCC
T ss_conf 99648998999999874999999999999999999999998878268787899698589888998768750257787765
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 12023588876881212038998777532046679998838999999839999999842999999999988999999811
Q 000706 158 VLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDEMSPNFKSFLKGLL 237 (1342)
Q Consensus 158 ~~ssivGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~plelP~eISpeLkdLIkkML 237 (1342)
...+.+||+.|+|||++.+..|+.++||||+||++|+|++|++||.+.+..+...++......+|..+++++++||.+||
T Consensus 190 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL 269 (311)
T 4aw0_A 190 RANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLL 269 (311)
T ss_dssp CBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 43675568030799897689999689899899999999749899899799999999971999999656999999999976
Q ss_pred CCCCCCCCCHHH------HHCCCCCCCCHH
Q ss_conf 019999999989------972957634314
Q 000706 238 NKVPQNRLTWSA------LLEHPFVKETSD 261 (1342)
Q Consensus 238 skDPeKRPTaeE------LLkHPfFke~~e 261 (1342)
++||++|+|++| +++||||++...
T Consensus 270 ~~dp~~R~t~~e~~~~~~i~~Hp~F~~idw 299 (311)
T 4aw0_A 270 VLDATKRLGCEEMEGYGPLKAHPFFESVTW 299 (311)
T ss_dssp CSSGGGSTTSGGGTCHHHHHTSGGGTTCCC
T ss_pred CCCHHHCCCHHHHCCCHHHHCCCCCCCCCH
T ss_conf 289757809679758779877987589898
No 3
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00 E-value=1 Score=455.26 Aligned_cols=260 Identities=31% Similarity=0.514 Sum_probs=238.7
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEEC---CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
Q ss_conf 8878899999732593799999995---6995999999615799978999999999999935999811588888708959
Q 000706 2 GVENYHVIELVGEGSFGKVYKGRRK---YTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEF 78 (1342)
Q Consensus 2 dIDrYkILK~LGsGaFGtVYKArdk---~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~i 78 (1342)
+.++|++++.||+|+||.||+|++. .+++.||+|++.+......+..++.+|++++++++|||||++++++++++.+
T Consensus 22 ~p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~ 101 (304)
T 3ubd_A 22 DPSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKL 101 (304)
T ss_dssp CGGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEE
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEE
T ss_conf 95565898897218883999999855887897999999815776847899999999999877997999099999989999
Q ss_pred EEEEECCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCE
Q ss_conf 99994369-88488986099999999999999999999986609925038899837975897089953363212457740
Q 000706 79 CVVTEFAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTV 157 (1342)
Q Consensus 79 yIVMEYve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~sss~ 157 (1342)
|+||||++ |+|++++.+.+.+++..++.|+.|++.||.|||++||+||||||+|||++.+|.+||+|||+|+.......
T Consensus 102 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~ 181 (304)
T 3ubd_A 102 YLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK 181 (304)
T ss_dssp EEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C
T ss_pred EEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEECCCCCCEECCCCCC
T ss_conf 99997579988899997559999999999999999999999977995888878995786899887623663433268876
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 12023588876881212038998777532046679998838999999839999999842999999999988999999811
Q 000706 158 VLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDEMSPNFKSFLKGLL 237 (1342)
Q Consensus 158 ~~ssivGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~plelP~eISpeLkdLIkkML 237 (1342)
...+.+||+.|+|||++.+..|+.++||||+||++|+|++|+.||.+.+..+....+.+....+|..+|+++++||.+||
T Consensus 182 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L 261 (304)
T 3ubd_A 182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLF 261 (304)
T ss_dssp CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 30454418150799996568878777636119999999859899898499999999971899998768999999999986
Q ss_pred CCCCCCCCC-----HHHHHCCCCCCCCHH
Q ss_conf 019999999-----989972957634314
Q 000706 238 NKVPQNRLT-----WSALLEHPFVKETSD 261 (1342)
Q Consensus 238 skDPeKRPT-----aeELLkHPfFke~~e 261 (1342)
++||++||| ++|+++||||++...
T Consensus 262 ~~dP~~R~ta~~~~~~eil~Hp~f~~idw 290 (304)
T 3ubd_A 262 KRNPANRLGAGPDGVEEIKRHSFFSTIDW 290 (304)
T ss_dssp CSSGGGSTTCSTTTHHHHHTSGGGTTCCH
T ss_pred CCCHHHCCCCCCCCHHHHHCCCCCCCCCH
T ss_conf 46987879998678999976904037899
No 4
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=453.76 Aligned_cols=254 Identities=34% Similarity=0.597 Sum_probs=231.4
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEE
Q ss_conf 78899999732593799999995699599999961579997899999999999993599981158888870895999994
Q 000706 4 ENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVVTE 83 (1342)
Q Consensus 4 DrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyIVME 83 (1342)
+.|+++++||+|+||.||+|+++.+++.||+|++.+..... .+.+.+|+.+|++++|||||++++++++++.+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmE 151 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 151 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS--GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred HHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 75387079602728299999998999899999985276568--9999999999986799899919999998999999996
Q ss_pred CCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEECC
Q ss_conf 369-8848898609999999999999999999998660992503889983797589708995336321245774012023
Q 000706 84 FAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVVLRSI 162 (1342)
Q Consensus 84 Yve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~sss~~~ssi 162 (1342)
|++ |+|.+++.+ +++++..++.|+.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+.+........+.
T Consensus 152 y~~gg~L~~~l~~-~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~ 230 (346)
T 4fih_A 152 FLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL 230 (346)
T ss_dssp CCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCC
T ss_pred CCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCCC
T ss_conf 9899808999871-898999999999999999999998883556278899788799988990275753667887753465
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHCCC
Q ss_conf 58887688121203899877753204667999883899999983999999984299---999999998899999981101
Q 000706 163 KGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDP---VKYPDEMSPNFKSFLKGLLNK 239 (1342)
Q Consensus 163 vGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~p---lelP~eISpeLkdLIkkMLsk 239 (1342)
+||+.|+|||++.+.+|+.++||||+||++|||++|++||.+.+..+....+.... ...+..+++++++||.+||++
T Consensus 231 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~ 310 (346)
T 4fih_A 231 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVR 310 (346)
T ss_dssp CSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCS
T ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 62758279999779999968999999999999997879989859999999997179998875022999999999998679
Q ss_pred CCCCCCCHHHHHCCCCCCCCH
Q ss_conf 999999998997295763431
Q 000706 240 VPQNRLTWSALLEHPFVKETS 260 (1342)
Q Consensus 240 DPeKRPTaeELLkHPfFke~~ 260 (1342)
||++|||+.|+++||||++..
T Consensus 311 dP~~R~ta~e~l~Hp~~~~~~ 331 (346)
T 4fih_A 311 DPAQRATAAELLKHPFLAKAG 331 (346)
T ss_dssp STTTSCCHHHHTTCGGGGGCC
T ss_pred CHHHCCCHHHHHCCHHHCCCC
T ss_conf 956890999996098656899
No 5
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=453.32 Aligned_cols=254 Identities=34% Similarity=0.597 Sum_probs=231.8
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEEE
Q ss_conf 78899999732593799999995699599999961579997899999999999993599981158888870895999994
Q 000706 4 ENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVVTE 83 (1342)
Q Consensus 4 DrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyIVME 83 (1342)
+.|+++++||+|+||.||+|+++.+++.||+|++.+..... .+.+.+|+.+|+.++|||||+++++|++++.+|||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSS--GGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 84386169624818489999999999899999986255468--9999999999985799898716899998999999996
Q ss_pred CCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEECC
Q ss_conf 369-8848898609999999999999999999998660992503889983797589708995336321245774012023
Q 000706 84 FAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVVLRSI 162 (1342)
Q Consensus 84 Yve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~sss~~~ssi 162 (1342)
|++ |+|.+++.. +.+++..++.|+.||+.||.|||++||+||||||+|||++.+|.+||+|||+|+.+........+.
T Consensus 229 y~~gG~L~~~i~~-~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~ 307 (423)
T 4fie_A 229 FLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL 307 (423)
T ss_dssp CCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCC
T ss_pred CCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCCCCCCCC
T ss_conf 9899828988761-698999999999999999999998890446578777898589998980372654777887643466
Q ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCC---CCCCCCCCHHHHHHHHHHCCC
Q ss_conf 58887688121203899877753204667999883899999983999999984299---999999998899999981101
Q 000706 163 KGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDP---VKYPDEMSPNFKSFLKGLLNK 239 (1342)
Q Consensus 163 vGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~p---lelP~eISpeLkdLIkkMLsk 239 (1342)
+||+.|+|||++.+..|+.++||||+||++|||++|+.||.+.+..+.+..+.... ...+..+++++++||.+||+.
T Consensus 308 ~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~ 387 (423)
T 4fie_A 308 VGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVR 387 (423)
T ss_dssp EECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCS
T ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 64747279999779999968999999999999997879989869999999997279988765012999999999998678
Q ss_pred CCCCCCCHHHHHCCCCCCCCH
Q ss_conf 999999998997295763431
Q 000706 240 VPQNRLTWSALLEHPFVKETS 260 (1342)
Q Consensus 240 DPeKRPTaeELLkHPfFke~~ 260 (1342)
||++|+|+.|+|+||||++..
T Consensus 388 dP~~R~ta~ell~Hp~~~~~~ 408 (423)
T 4fie_A 388 DPAQRATAAELLKHPFLAKAG 408 (423)
T ss_dssp STTTSCCHHHHTTCGGGGGCC
T ss_pred CHHHCCCHHHHHCCHHHCCCC
T ss_conf 956890999996098756899
No 6
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00 E-value=1 Score=450.35 Aligned_cols=256 Identities=33% Similarity=0.597 Sum_probs=237.5
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 8788999997325937999999956995999999615799978-999999999999935999811588888708959999
Q 000706 3 VENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEK-DIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVV 81 (1342)
Q Consensus 3 IDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~ses-eikrL~rEIkILkkLsHPNIVKLidvfeded~iyIV 81 (1342)
+++|++.+.||+|+||.||+|+++.+++.||+|++.+...... ...++.+|++++++++||||+++++++++++.+|+|
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv 91 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred EECEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf 33868999982176819999999999989999998378867878999999999999877998999299999989989999
Q ss_pred EECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEEC
Q ss_conf 94369884889860999999999999999999999866099250388998379758970899533632124577401202
Q 000706 82 TEFAQGELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSANTVVLRS 161 (1342)
Q Consensus 82 MEYveGSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~sss~~~ss 161 (1342)
|||++|+|++++.+.+++++..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+|+...... ...+
T Consensus 92 mEy~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~-~~~~ 170 (275)
T 3hyh_A 92 IEYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN-FLKT 170 (275)
T ss_dssp EECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC------------
T ss_pred EECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCCC-CCCC
T ss_conf 927899789999874999999999999999999999998893066687587688799989994547772667887-4677
Q ss_pred CCCCCCCCCHHHHCCCCC-CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 358887688121203899-8777532046679998838999999839999999842999999999988999999811019
Q 000706 162 IKGTPLYMAPELVREQPY-NHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDEMSPNFKSFLKGLLNKV 240 (1342)
Q Consensus 162 ivGTp~YlAPEIL~g~~Y-T~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~plelP~eISpeLkdLIkkMLskD 240 (1342)
.+||+.|+|||++.+..| +.++||||+||++|+|++|+.||.+.+..+..+.+......+|..+|+++++||.+||+.|
T Consensus 171 ~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~d 250 (275)
T 3hyh_A 171 SCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVN 250 (275)
T ss_dssp ----CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSS
T ss_pred EEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 02893527745506898889836568789999999988799899899999999974999998779999999999986589
Q ss_pred CCCCCCHHHHHCCCCCCCC
Q ss_conf 9999999899729576343
Q 000706 241 PQNRLTWSALLEHPFVKET 259 (1342)
Q Consensus 241 PeKRPTaeELLkHPfFke~ 259 (1342)
|++|||++|+++||||+..
T Consensus 251 P~~R~s~~eil~hpw~k~~ 269 (275)
T 3hyh_A 251 PLNRISIHEIMQDDWFKVD 269 (275)
T ss_dssp GGGSCCHHHHHHCHHHHTT
T ss_pred HHHCCCHHHHHCCCCCCCC
T ss_conf 6689199999719200658
No 7
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=1.00 E-value=1 Score=439.17 Aligned_cols=260 Identities=28% Similarity=0.504 Sum_probs=231.1
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCC----CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 98878899999732593799999995699599999961579----99789999999999999359998115888887089
Q 000706 1 MGVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHG----KSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQ 76 (1342)
Q Consensus 1 mdIDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~----~seseikrL~rEIkILkkLsHPNIVKLidvfeded 76 (1342)
+.+++|++++.||+|+||.||+|+++.+++.||+|++.+.. ...........++.+++.++|||||+++++|++++
T Consensus 186 ~slddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~ 265 (689)
T 3v5w_A 186 LTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPD 265 (689)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSS
T ss_pred CCHHHEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC
T ss_conf 95689288889831648399999999999899999975788252556899999999999996489998717999999899
Q ss_pred EEEEEEECCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 5999994369-884889860999999999999999999999866099250388998379758970899533632124577
Q 000706 77 EFCVVTEFAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSAN 155 (1342)
Q Consensus 77 ~iyIVMEYve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~ss 155 (1342)
.+|+||||++ |+|++++.+.+.++|..++.|+.||+.||.|||++||+||||||+|||++.+|++||+|||+|+.....
T Consensus 266 ~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~ 345 (689)
T 3v5w_A 266 KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK 345 (689)
T ss_dssp EEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC
T ss_pred EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEEECCCCEEECCCCEEEECCCC
T ss_conf 88999946899829999986699999999999999999999999788541688668759808998896456556663789
Q ss_pred CEEEECCCCCCCCCCHHHHC-CCCCCCCCCCCCHHHHHHHHHHCCCCCCCC---CHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 40120235888768812120-389987775320466799988389999998---39999999842999999999988999
Q 000706 156 TVVLRSIKGTPLYMAPELVR-EQPYNHTADLWSLGVILYELFVGQPPFYTN---SVYALIRHIVKDPVKYPDEMSPNFKS 231 (1342)
Q Consensus 156 s~~~ssivGTp~YlAPEIL~-g~~YT~kSDIWSLGVILYELLTGklPF~gs---s~~elikkIvk~plelP~eISpeLkd 231 (1342)
. ..+.+||+.|+|||++. +..|+.++||||+||++|+|++|++||.+. +.....+.+......+|..+|+++++
T Consensus 346 ~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~d 423 (689)
T 3v5w_A 346 K--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRS 423 (689)
T ss_dssp C--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHH
T ss_pred C--CCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 8--77765786731889984799999599999999999999868799999986779999985057988887669999999
Q ss_pred HHHHHCCCCCCCCCC-----HHHHHCCCCCCCCHHH
Q ss_conf 999811019999999-----9899729576343145
Q 000706 232 FLKGLLNKVPQNRLT-----WSALLEHPFVKETSDE 262 (1342)
Q Consensus 232 LIkkMLskDPeKRPT-----aeELLkHPfFke~~ee 262 (1342)
||.+||++||.+|++ ++|+++||||++....
T Consensus 424 LI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~idW~ 459 (689)
T 3v5w_A 424 LLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSLDWQ 459 (689)
T ss_dssp HHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTTCCHH
T ss_pred HHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 999976089868799988899999669150478988
No 8
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=438.96 Aligned_cols=256 Identities=31% Similarity=0.509 Sum_probs=228.3
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE------CCE
Q ss_conf 78899999732593799999995699599999961579997899999999999993599981158888870------895
Q 000706 4 ENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFES------PQE 77 (1342)
Q Consensus 4 DrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfed------ed~ 77 (1342)
++|++++.||+|+||.||+|+++.+++.||||++.+........+++.+|+++|+.++|||||++++++.. .+.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCE
T ss_conf 97489889842608499999998999899999987400346889999999999986679995417655520355466887
Q ss_pred EEEEEECCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCCCEEEEECCCCCCCCCC--
Q ss_conf 999994369884889860999999999999999999999866099250388998379758970899533632124577--
Q 000706 78 FCVVTEFAQGELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSAN-- 155 (1342)
Q Consensus 78 iyIVMEYveGSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG~IKLiDFGLAk~l~ss-- 155 (1342)
+|+||||++|+|++++.+.+++++..++.|++||+.||.|||++||+||||||+|||++.++.+||+|||+++.+...
T Consensus 134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~ 213 (398)
T 4b99_A 134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA 213 (398)
T ss_dssp EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-----
T ss_pred EEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCC
T ss_conf 99998379998899998659999999999999999999999988676787371335427888778722143421346754
Q ss_pred --CEEEECCCCCCCCCCHHHHCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC-----------
Q ss_conf --4012023588876881212038-99877753204667999883899999983999999984299999-----------
Q 000706 156 --TVVLRSIKGTPLYMAPELVREQ-PYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKY----------- 221 (1342)
Q Consensus 156 --s~~~ssivGTp~YlAPEIL~g~-~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~plel----------- 221 (1342)
.....+.+||++|+|||++.+. .|+.++||||+||++|+|++|++||.+.+..+.+..|.......
T Consensus 214 ~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~ 293 (398)
T 4b99_A 214 EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAE 293 (398)
T ss_dssp --CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----
T ss_pred CCCCCCCCCEECHHHCCHHHHCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 56666566255867648787627888997222111689999999788998988989999999970389986776331002
Q ss_pred --------------------CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCC
Q ss_conf --------------------99999889999998110199999999899729576343
Q 000706 222 --------------------PDEMSPNFKSFLKGLLNKVPQNRLTWSALLEHPFVKET 259 (1342)
Q Consensus 222 --------------------P~eISpeLkdLIkkMLskDPeKRPTaeELLkHPfFke~ 259 (1342)
.+.+++++.+||.+||+.||.+|||+.|+|+||||++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~ 351 (398)
T 4b99_A 294 RVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKY 351 (398)
T ss_dssp CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTT
T ss_pred HHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf 3455553078768878898587999999999999774995579189999659723868
No 9
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00 E-value=1 Score=434.67 Aligned_cols=245 Identities=27% Similarity=0.402 Sum_probs=220.2
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
Q ss_conf 88788999997325937999999956995999999615799978999999999999935999811588888708959999
Q 000706 2 GVENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVV 81 (1342)
Q Consensus 2 dIDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyIV 81 (1342)
+++.|++.+.||+|+||.||+|+++.+++.||+|++++.... .+|+.++++++|||||++++++++++.+|||
T Consensus 56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-------~~E~~il~~l~HpnIV~l~~~~~~~~~~~iv 128 (336)
T 4g3f_A 56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-------VEELVACAGLSSPRIVPLYGAVREGPWVNIF 128 (336)
T ss_dssp TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-------THHHHTTTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred CHHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH-------HHHHHHHHHCCCCCCCCEEEEEEECCEEEEE
T ss_conf 533517686851387809999998899989999997888869-------9999999857998999399999989999999
Q ss_pred EECCC-CCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCCC-CEEEEECCCCCCCCCCCE--
Q ss_conf 94369-88488986099999999999999999999986609925038899837975897-089953363212457740--
Q 000706 82 TEFAQ-GELFEILEDDKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAGS-VVKLCDFGFARAMSANTV-- 157 (1342)
Q Consensus 82 MEYve-GSLlDlLek~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsdG-~IKLiDFGLAk~l~sss~-- 157 (1342)
|||++ |+|.+++.+.+++++..++.|+.|++.||.|||++||+||||||+|||++.+| ++||+|||+|+.......
T Consensus 129 mEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~ 208 (336)
T 4g3f_A 129 MELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGK 208 (336)
T ss_dssp ECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC-------
T ss_pred EECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECCCCEEEEEECCCCEECCCCCCCC
T ss_conf 96659986999998769999999999999999999999988904261677887995899979996278776856787654
Q ss_pred ---EEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---CCCCCCCHHHHH
Q ss_conf ---12023588876881212038998777532046679998838999999839999999842999---999999988999
Q 000706 158 ---VLRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPV---KYPDEMSPNFKS 231 (1342)
Q Consensus 158 ---~~ssivGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~pl---elP~eISpeLkd 231 (1342)
.....+||+.|+|||++.+.+|+.++||||+||++|+|++|+.||.+.+..+...++...+. .+|+.+++++.+
T Consensus 209 ~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~ 288 (336)
T 4g3f_A 209 SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQ 288 (336)
T ss_dssp -----CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHH
T ss_pred CEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHCCCCCCHHHHH
T ss_conf 02217854558020089998899989089999999999999978699899899999999980899800258667999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHCC
Q ss_conf 9998110199999999899729
Q 000706 232 FLKGLLNKVPQNRLTWSALLEH 253 (1342)
Q Consensus 232 LIkkMLskDPeKRPTaeELLkH 253 (1342)
||.+||++||.+|||+.|+++|
T Consensus 289 li~~~L~~dP~~R~sa~el~~~ 310 (336)
T 4g3f_A 289 AIQEGLRKEPVHRASAMELRRK 310 (336)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHH
T ss_pred HHHHHCCCCHHHCCCHHHHHHH
T ss_conf 9999762897689599999999
No 10
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=1.00 E-value=1 Score=430.53 Aligned_cols=256 Identities=30% Similarity=0.562 Sum_probs=233.4
Q ss_pred CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf 87889999973259379999999569959999996157999789999999999999359998115888887089599999
Q 000706 3 VENYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKSEKDIHNLRQEIEILRKLKHQNIIEMLDSFESPQEFCVVT 82 (1342)
Q Consensus 3 IDrYkILK~LGsGaFGtVYKArdk~TGk~VAIKvIkKs~~seseikrL~rEIkILkkLsHPNIVKLidvfeded~iyIVM 82 (1342)
+++|++++.||+|+||.||+|+++.+++.||+|++.+.. ..+.+.+.+|+++|+.++||||++++++|++++.+|+||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~--~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~ 233 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH--ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIY 233 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS--HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECCC--HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
T ss_conf 536189889961648499999998899899999991524--205999999999998689989894999999899889998
Q ss_pred ECCC-CCHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEECCC--CCEEEEECCCCCCCCCCCEE
Q ss_conf 4369-884889860-9999999999999999999998660992503889983797589--70899533632124577401
Q 000706 83 EFAQ-GELFEILED-DKCLPEEQVQSIAKQLVRALHYLHSNRIIHRDMKPQNILIGAG--SVVKLCDFGFARAMSANTVV 158 (1342)
Q Consensus 83 EYve-GSLlDlLek-~k~LSEeeIikIl~QILkALaYLHskGIVHRDIKPENILIdsd--G~IKLiDFGLAk~l~sss~~ 158 (1342)
||++ |+|++++.+ .+.+++..++.|+.||+.||.|||++||+||||||+|||++.+ +.+||+|||+++.+.... .
T Consensus 234 E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~-~ 312 (573)
T 3uto_A 234 EFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQ-S 312 (573)
T ss_dssp ECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTS-E
T ss_pred EECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHCCCCCCCCCCEEEEECCCEEECCCCC-C
T ss_conf 606999599999986799999999999999999999999889230568765512147888978994066306856998-2
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC----CCCCHHHHHHHH
Q ss_conf 2023588876881212038998777532046679998838999999839999999842999999----999988999999
Q 000706 159 LRSIKGTPLYMAPELVREQPYNHTADLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYP----DEMSPNFKSFLK 234 (1342)
Q Consensus 159 ~ssivGTp~YlAPEIL~g~~YT~kSDIWSLGVILYELLTGklPF~gss~~elikkIvk~plelP----~eISpeLkdLIk 234 (1342)
....+||+.|+|||++.+.+|+.++||||+||++|+|++|+.||.+.+..+.+..+......++ ..+++++++||.
T Consensus 313 ~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~ 392 (573)
T 3uto_A 313 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIR 392 (573)
T ss_dssp EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 32347794514999968999896999999999999999787997986999999999848999895324689999999999
Q ss_pred HHCCCCCCCCCCHHHHHCCCCCCCCHH
Q ss_conf 811019999999989972957634314
Q 000706 235 GLLNKVPQNRLTWSALLEHPFVKETSD 261 (1342)
Q Consensus 235 kMLskDPeKRPTaeELLkHPfFke~~e 261 (1342)
+||+.||.+|||+.|+++||||+....
T Consensus 393 ~~L~~dp~~R~t~~e~l~Hpw~~~~~~ 419 (573)
T 3uto_A 393 KLLLADPNTRMTIHQALEHPWLTPGNA 419 (573)
T ss_dssp TTSCSSGGGSCCHHHHHHSTTTSCCCC
T ss_pred HHCCCCHHHCCCHHHHHCCCCCCCCCC
T ss_conf 886489568929999953957487989
Done!