BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000707
(1341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BZH6|WDR11_HUMAN WD repeat-containing protein 11 OS=Homo sapiens GN=WDR11 PE=1 SV=1
Length = 1224
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 300/1300 (23%), Positives = 549/1300 (42%), Gaps = 177/1300 (13%)
Query: 18 LPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPF 77
L G + +N + D GL+A+ S + ++DS + Q T+ + A
Sbjct: 15 LTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSITAQ---TLQVLEKHKAD-------- 63
Query: 78 VTAVKWIPITLRCDLLSTEPGSSHLL-LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG 136
V VKW ++ GS + L LA+AD +G++ + D I P
Sbjct: 64 VVKVKWARENYHHNI-----GSPYCLRLASADVNGKIIVWDVAAGVAQCEIQEHAKP--- 115
Query: 137 IQDLCWIVSKPDSF-VLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHF 195
IQD+ W+ ++ S +L AI+ P+ + L+N + + +WK + LS +PFD H
Sbjct: 116 IQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILS-FSFDPFDPSHL 174
Query: 196 CVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASL---------- 245
+L +G++ K K++ I + + + + GA
Sbjct: 175 TLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLATATGAKKALNKVKILITQ 234
Query: 246 -SPASGLFPLY-MVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDV 303
P++ L ++ + P R+ + + +PRE+++ DL+ + A+ R FL V
Sbjct: 235 EKPSAEFITLNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQV 294
Query: 304 LADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSE 363
+ D L+C H +G +++ R+ + + EE P P + L SQ +
Sbjct: 295 IPCFQRDGLFCLHENGCITLRVRRSYNNIFTT-SNEEPDPD-----PVQELTYDLRSQCD 348
Query: 364 S-----TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418
+ T++ + +C + +A L++S DG+V W L
Sbjct: 349 AIRVTKTVRPFSMVCCPVNENAAA--------------LVVS---------DGRVMIWEL 385
Query: 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPS 478
+ +++ SG+ V+ CG + + +L+ + G + P
Sbjct: 386 KSAVCNRNSRNS-SSGVSPLYSPVSFCGIPVGVLQNKLPDLSLDNMIGQSAIAGEEH-PR 443
Query: 479 NSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQS 538
S + + F +L+ ++ L P ++ + PL+A+GT +
Sbjct: 444 GSILREVHLKF---------LLTGLLSGLPAPQFAIRMCPPLTTKNIKMYQPLLAVGTSN 494
Query: 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR 598
G+V V +++ + S+H+ V+G+ W + +SF+ S N G N L + L
Sbjct: 495 GSVLVYHLTSGLLHKELSIHSCEVKGIEWTSLTSFLSFATSTPNNM-GLVRNELQLVDLP 553
Query: 599 SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-- 656
+G + AFR + + + I ++ S +YL ++FRD P+E+W + + +LR ++ F
Sbjct: 554 TGRSIAFRGERGNDESAIEMIKVSHLKQYLAVVFRDKPLELWDV-RTCTLLREMSKNFPT 612
Query: 657 -TVLEWTLPTVPWPSQTGPS-RQSSLSSKDHKA------DTTDGVSTPTIASSSDSKDAS 708
T LEW+ PS S R+ L++++ A DT + ++ S ++
Sbjct: 613 ITALEWS------PSHNLKSLRKKQLATREAMARQTVVSDTELSIVESSVISLLQEAESK 666
Query: 709 SEGSQDDTS-ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPH 767
SE SQ+ ++ E F F +G + V G ++D P S G IT +A++
Sbjct: 667 SELSQNISAREHFVFTDIDGQVYHLTVEGNSVKDSARIPPDGSM----GSITCIAWKGDT 722
Query: 768 VVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827
+V+GD GN+ +WD+ S THR +R+I+F+P + ++ +++D V+
Sbjct: 723 LVLGDMDGNLNFWDLKGRVSRGIPTHRSWVRKIRFAP----GKGNQKLIAMYNDGA-EVW 777
Query: 828 DLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKI 887
D + + +SL + +L++DW + D ++L A D R++E++ +
Sbjct: 778 D-TKEVQMVSSLRSGRNVTFRILDVDWCTS-----DKVIL--ASDDGCIRVLEMSMK--- 826
Query: 888 GYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCSTTIKKRPHLIP 947
S + E+ P+ P LL +LAL+ L + W S I +
Sbjct: 827 ---SACFRMDEQELTEPVWCPYLLVPRASLALKAFL---LHQPWNGQYSLDISHVDY--- 877
Query: 948 GTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAA 1007
P +++ ++ E L + +K +LD E L
Sbjct: 878 --PENEEI------------KNLLQEQLNSLSNDIKK--LLLDPEFTLL----------Q 911
Query: 1008 RFAFAAAVFGETSEALFWLQLPRALNHLMRKLKRSPQKAPHLAFNSELEDTMLSRITSKG 1067
R + ++G+ SE FW L H + + K + AP A +
Sbjct: 912 RCLLVSRLYGDESELHFWTVAAHYL-HSLSQEKSASTTAPKEAAPRD------------K 958
Query: 1068 KSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHE-KLEGEQAIQNRVHELVSVGN 1126
S P D L E F++ +L ER+ E K + +L+ +G
Sbjct: 959 LSNPLDICYDVLCENAY----FQKFQL-----ERVNLQEVKRSTYDHTRKCTDQLLLLGQ 1009
Query: 1127 LEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHL 1186
+ AV LLL TS ++ ++Y ++L+A +++ S + +K+VA NM+ N + G L
Sbjct: 1010 TDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGKLAEGVQL 1069
Query: 1187 LCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIW-RALI 1245
LC + + +AC LQ G W AA LA L + A VL+RW DH+ + N +AL+
Sbjct: 1070 LCLIDKAADACRYLQTYGEWNRAAWLAKVRLNPEECADVLRRWVDHLCSPQVNQKSKALL 1129
Query: 1246 LYVAAGGLQEALAALREAQHPDTAAMFVLACREIYAEIIT 1285
+ ++ G L ++ D AA+FV AC + A +T
Sbjct: 1130 VLLSLGCFFSVAETLHSMRYFDRAALFVEACLKYGAFEVT 1169
>sp|Q8K1X1|WDR11_MOUSE WD repeat-containing protein 11 OS=Mus musculus GN=Wdr11 PE=2 SV=1
Length = 1223
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 202/897 (22%), Positives = 382/897 (42%), Gaps = 116/897 (12%)
Query: 18 LPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPF 77
L G + +N + D GL+A+ S + ++DS + Q T+ + A
Sbjct: 15 LTGALNAHNKAAVDWGWQGLIAYGCHSLVVVIDSNTAQ---TLQVLEKHKAD-------- 63
Query: 78 VTAVKWIPITLRCDLLSTEPGSSHLL-LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG 136
+ V+W ++ GS + L LA+AD G++ + D I P
Sbjct: 64 IVKVRWARENYHHNI-----GSPYCLRLASADVTGKIIVWDVAAGVAQCEIQEHVKP--- 115
Query: 137 IQDLCWIVSKPDSF-VLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHF 195
IQD+ W+ ++ S +L AI+ P+ + L+N + + +WK + LS +PFD H
Sbjct: 116 IQDVQWLWNQDASRDLLLAIHPPNYIVLWNADTGTKLWKKSYADNILS-FSFDPFDPSHL 174
Query: 196 CVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASL---------- 245
+L +G++ K K++ I + + + + GA
Sbjct: 175 TLLTSEGIVFISDFSPSKPPSGPGKKVYISSPHSSPAHNKLAAATGAKKALNKVKILITQ 234
Query: 246 -SPASGLFPLY-MVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDV 303
P++ L ++ + P R+ + + +PRE+++ DL+ + A+ R FL V
Sbjct: 235 EKPSADFVALNDCLQLAYLPSKRNHMLLLYPREILILDLEVNQTVGVIAIERTGVPFLQV 294
Query: 304 LADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSE 363
+ D L+C H +G +++ R+ + CT P + P + L SQ +
Sbjct: 295 IPCSQRDGLFCLHENGCITLRVRRSYNSI---CTTSNDEPDLD---PVQELTYDLRSQCD 348
Query: 364 S-----TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418
+ T++ + +C + +A I DG+V W L
Sbjct: 349 AIRVTKTVRPFSMVCCPVNENAAA-----------------------LIVSDGRVMIWEL 385
Query: 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPS 478
+ +++ SG+ V+ CG + + +L+ + G + P
Sbjct: 386 KSAVCSRNARNS--SGVSPLYSPVSFCGIPGGVLQNKLPDLSLDNMIGQSAIAGEEH-PK 442
Query: 479 NSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQS 538
S + + F L G L L S + + P T + PL+A+GT +
Sbjct: 443 GSILQEVHLKFL--LTGLLSGLPSPQFAIRMCPPLTTKNIK-------TYQPLLAVGTSN 493
Query: 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR 598
G+V V +++ + SVH+ V+G+ W + +SF+ S N G N L + L
Sbjct: 494 GSVLVYHLTSGLLHKELSVHSCEVKGIEWTSLTSFLSFAASTPNNM-GLVRNELQLVDLP 552
Query: 599 SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-- 656
+G + AFR + + +PI ++ S +YL ++F+D P+E+W + + +LR ++ F
Sbjct: 553 TGRSTAFRGDRGNDESPIEMIKVSHLKQYLAVVFKDKPLELWDI-RTCTLLREMSKSFPA 611
Query: 657 -TVLEWTLPTVPWPSQTGPS-RQSSLSSKDHKA------DTTDGVSTPTIASSSDSKDAS 708
T LEW+ PS S R+ L++++ A D G ++ S ++
Sbjct: 612 ITALEWS------PSHNLKSLRKKQLATREAMARQTVVSDAELGAVESSVISLLQEAESK 665
Query: 709 SEGSQDDTS-ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPH 767
+E SQ+ ++ E F F +G + V G ++D P S G IT +A++
Sbjct: 666 AELSQNISAREHFVFTDNDGQVYHLTVEGNSVKDSARIPPDGSM----GSITCIAWKGDT 721
Query: 768 VVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827
+V+GD GN+ +WD+ S THR +R+I+F+P + ++ +++D V+
Sbjct: 722 LVLGDMDGNLNFWDLKARVSRGIPTHRSWVRKIRFAP----GKGNQKLIAMYNDGA-EVW 776
Query: 828 DLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884
D + + +SL + +L++DW + D ++L A D R++E++ +
Sbjct: 777 D-TKEVQMVSSLRSGRNVTFRILDVDWCTS-----DKVIL--ASDDGCIRVLEMSMK 825
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 87/158 (55%), Gaps = 1/158 (0%)
Query: 1120 ELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDR 1179
+L+ +G + AV LLL TS ++ ++Y ++L+A +++ S + +K+VA NM+ N +
Sbjct: 1002 QLLLLGQTDRAVQLLLETSADNQHYYCDSLKACLVTTVTSSGPSQSTIKLVATNMIANGK 1061
Query: 1180 SLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHN 1239
G LLC + + +AC LQ G W AA LA L + A VL+RW DH+ + N
Sbjct: 1062 LAEGVQLLCLIDKAADACRYLQTYGEWNRAAWLAKVRLNSEECADVLKRWVDHLCSPQVN 1121
Query: 1240 IW-RALILYVAAGGLQEALAALREAQHPDTAAMFVLAC 1276
+AL++ ++ G L ++ D AA+FV AC
Sbjct: 1122 QKSKALLVLLSLGCFVSVAETLHSMRYFDRAALFVEAC 1159
>sp|O88879|APAF_MOUSE Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1
SV=3
Length = 1249
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 111/288 (38%), Gaps = 44/288 (15%)
Query: 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR-LVSFSYSQV----NE 583
+ VA G + GA+ ++++ N V +S H VR +++ + + L+S S V N
Sbjct: 973 LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 584 KSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMT 643
++G Y V + + ++ R R L F D V+VW +
Sbjct: 1033 QTGDY------------------VFLQAHQETVKDFRLLQDSRLLSWSF-DGTVKVWNVI 1073
Query: 644 KNPIMLRSLALPFTVLEWTLPTVPWP-SQTGPSRQSSLSSKD-----HKADTTDGVSTPT 697
I TVL + + S T + + + S D H+ +G
Sbjct: 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC---- 1129
Query: 698 IASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGL 757
+ S+ S D + DD E + +++G L + P + G
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNVSDGQL---------LHSCAPISVEEGTATHGGW 1180
Query: 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQ-FSTHREGIRRIKFSP 804
+T + + + G ++WW+V TG SSQ F T+ +++I SP
Sbjct: 1181 VTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSP 1228
>sp|Q9EPV5|APAF_RAT Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1
PE=2 SV=1
Length = 1249
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 105/288 (36%), Gaps = 44/288 (15%)
Query: 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR-LVSFSYSQVNEKSGG 587
+ VA G + GA+ ++++ N V +S H VR +++ + + L+S S V +
Sbjct: 973 LEYVAFGDEEGAIKIIELPNNRVFSSGIGHKKAVRHIQFTADGKTLISSSEDSVIQVWNW 1032
Query: 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI 647
V + FR+L+ LL D V+VW N I
Sbjct: 1033 QTEEYVFLQAHQETVKDFRLLRDSR---------------LLSWSFDGTVKVW----NVI 1073
Query: 648 MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDA 707
R + FT G ++SS K +T T I S
Sbjct: 1074 TGR-IERDFTC------------HQGTVLSCAISSDATKFSSTSADKTAKIWSFELPSPL 1120
Query: 708 SSEGSQDDTSESFAFALA---------NGALGVFEV-HGRRIRDFRPKWPSSSFISSDGL 757
+ AF+L NG + ++ V G+ + P + G
Sbjct: 1121 HELKGHNSCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHLCAPISIEEGTATHGGW 1180
Query: 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQ-FSTHREGIRRIKFSP 804
+T + + ++ G ++WW+V TG SSQ F T+ +++I SP
Sbjct: 1181 VTDVCFSPDRKMLVSAGGYLKWWNVVTGESSQTFYTNGTNLKKIHVSP 1228
>sp|O29265|MTAD2_ARCFU 5-methylthioadenosine/S-adenosylhomocysteine deaminase 2
OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 /
DSM 4304 / JCM 9628 / NBRC 100126) GN=mtaD2 PE=3 SV=1
Length = 416
Score = 38.5 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 286 TPLFSAALPRGCA-KFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPS 344
T + + P C+ +FL V++D + D + H+ ++W KE + + + E + S
Sbjct: 172 TTMLAPHAPYTCSPEFLKVVSDASKDKGFLKHIHVSETLWEVKEVRERYGKRPV-EFLDS 230
Query: 345 IGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHL 404
IG + S ++LA V SE+ ++ +A+ + H P++N+ + S + L +
Sbjct: 231 IGF-LDSSTVLAHAVWLSEAEMKILAERGVSVAHCPTSNLKLSSGIAKVSELLEMGVN-- 287
Query: 405 ISISDDGKVWNWLLT 419
+ I DG N +L+
Sbjct: 288 VGIGTDGAASNNMLS 302
>sp|O14727|APAF_HUMAN Apoptotic protease-activating factor 1 OS=Homo sapiens GN=APAF1 PE=1
SV=2
Length = 1248
Score = 38.5 bits (88), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/295 (19%), Positives = 116/295 (39%), Gaps = 35/295 (11%)
Query: 532 VALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINR 591
+A G ++GA++++++ N + S H TV +++ + + + S ++ N
Sbjct: 976 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTL---ISSSDDAEIQVWNW 1032
Query: 592 LVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651
+ C + + + ++ R + R L F D V+VW +
Sbjct: 1033 QLDKC----------IFLRGHQETVKDFRLLKNSRLLSWSF-DGTVKVWNIITGNKEKDF 1081
Query: 652 LALPFTVLEWTLP-TVPWPSQTGPSRQSSLSSKD-----HKADTTDGVSTPTIASSSDSK 705
+ TVL + S T + + + S D H+ +G + S+ S
Sbjct: 1082 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGC----VRCSAFSV 1137
Query: 706 DASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRL 765
D++ + DD E + ++NG L +H + G +T + +
Sbjct: 1138 DSTLLATGDDNGEIRIWNVSNGEL----LH------LCAPLSEEGAATHGGWVTDLCFSP 1187
Query: 766 PHVVMGDRSGNIRWWDVTTGHSSQ-FSTHREGIRRIKFSPVVPGDRSRGRIAVLF 819
++ G I+WW+V TG SSQ F T+ +++I SP + + +L+
Sbjct: 1188 DGKMLISAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILY 1242
>sp|Q9I9H8|APAF_DANRE Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2
SV=1
Length = 1261
Score = 36.6 bits (83), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 129/313 (41%), Gaps = 25/313 (7%)
Query: 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTAS 554
+LQ+LS + + + S L++ + + + VALG++ G V V++V ++ +
Sbjct: 946 NRLQVLSGSTGAVVLESEELSSRIR--CSCISRNAAFVALGSEDGTVQVIEVPSSKASVK 1003
Query: 555 FSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERA 614
S H TV ++ + ++ S +E S + V R+G + +P R
Sbjct: 1004 LSGHTKTVHHCQFTDDCEILITS----SEDST-----IRVWKWRTGECMVLQGHMEPVRK 1054
Query: 615 PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGP 674
+SS + D V+VW +T+ ++ + VL + + T
Sbjct: 1055 FHLLSSSSSPHLFSWSF--DGTVKVWDLTRGQMLQDLVCHEGAVLSCDVSSDGRLFATTS 1112
Query: 675 SRQSS--LSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732
+ +++ SS K + S S D + DD E +++ +GAL
Sbjct: 1113 ANRTAKVWSSASWKMLFLLEGHKDCVRSCRFSWDNKRLATGDDNGEIRLWSMLDGAL--L 1170
Query: 733 EVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQ-FS 791
++ R +D + + G +T + + + V+ +G I+WW V +G + Q F
Sbjct: 1171 KICPRDTKDSMNSYHA-------GWVTDLHFSPDNRVLVSTAGYIKWWSVESGEALQTFY 1223
Query: 792 THREGIRRIKFSP 804
T +++I SP
Sbjct: 1224 TMGGNLKKIHVSP 1236
>sp|Q05946|UTP13_YEAST U3 small nucleolar RNA-associated protein 13 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP13 PE=1
SV=1
Length = 817
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 531 LVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLG--NSRL 573
L+A+G G++ VVD+ +T SF H GT+ L++ G NS++
Sbjct: 116 LLAVGGTDGSIIVVDIENGYITHSFKGHGGTISSLKFYGQLNSKI 160
>sp|Q2H139|MDV1_CHAGB Mitochondrial division protein 1 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=MDV1 PE=3 SV=2
Length = 657
Score = 34.3 bits (77), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 715 DTSESFAFALA--NGALGVFEVHGR-RIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771
DT+ F AL AL G R+ D R S S + G +T + + H+V G
Sbjct: 500 DTAADFVGALQVFESALACGTADGMVRLWDLRSGQVSRSLVGHTGPVTCLQFDDVHLVTG 559
Query: 772 DRSGNIRWWDVTTGHSS 788
+IR WD+ TG S+
Sbjct: 560 SLDRSIRIWDLRTGSST 576
>sp|Q8RIQ1|MURA_FUSNN UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=murA PE=3 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFS 262
++ +V+ G+ E KE +I+ C L+K+ ++S S G+ L ++T
Sbjct: 173 IMAAVKAKGKTVLENAAKEPEIEDLCNFLIKMGAKISGVGTSRLEIDGVDKLTACEYTII 232
Query: 263 PHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322
P I+ T+ ++FD + S +P + FL L + K
Sbjct: 233 PD--RIVAGTYIIASILFDGSIKV---SGIVPEHLSSFL----------LKLEEMGTKFK 277
Query: 323 IWRRKEGEQVHVMCTMEELIPSIGTSVPSP 352
I EG+++ V+ + +L P+ T++P P
Sbjct: 278 I----EGDKLEVLTKLSDLKPAKVTTMPHP 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,927,650
Number of Sequences: 539616
Number of extensions: 20806449
Number of successful extensions: 57081
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 56913
Number of HSP's gapped (non-prelim): 175
length of query: 1341
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1211
effective length of database: 121,419,379
effective search space: 147038867969
effective search space used: 147038867969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)