Query 000707
Match_columns 1341
No_of_seqs 541 out of 2937
Neff 7.4
Searched_HMMs 46136
Date Mon Apr 1 22:17:06 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1912 WD40 repeat protein [G 100.0 9E-138 2E-142 1197.0 59.7 1030 8-1286 1-1062(1062)
2 KOG0318 WD40 repeat stress pro 100.0 4.5E-48 9.7E-53 437.2 65.4 569 30-882 24-602 (603)
3 KOG0319 WD40-repeat-containing 100.0 1.6E-46 3.4E-51 439.5 52.5 573 28-883 23-620 (775)
4 KOG0319 WD40-repeat-containing 100.0 3.8E-43 8.2E-48 411.2 45.7 530 26-831 64-620 (775)
5 KOG0271 Notchless-like WD40 re 100.0 3E-42 6.5E-47 376.8 26.4 338 250-828 112-479 (480)
6 KOG0291 WD40-repeat-containing 100.0 1.2E-37 2.6E-42 364.3 62.9 534 27-884 17-614 (893)
7 KOG0271 Notchless-like WD40 re 100.0 3.5E-41 7.6E-46 368.4 30.6 365 292-880 110-479 (480)
8 KOG0306 WD40-repeat-containing 100.0 1.1E-37 2.3E-42 364.7 51.2 602 34-883 32-665 (888)
9 KOG0318 WD40 repeat stress pro 100.0 5.2E-36 1.1E-40 339.6 58.4 522 23-830 58-602 (603)
10 KOG0291 WD40-repeat-containing 100.0 1.3E-35 2.8E-40 347.5 56.5 521 100-887 25-555 (893)
11 KOG0306 WD40-repeat-containing 100.0 1.7E-35 3.6E-40 346.3 48.6 543 26-831 67-665 (888)
12 KOG0272 U4/U6 small nuclear ri 100.0 9E-35 1.9E-39 323.0 24.2 275 500-880 174-458 (459)
13 KOG1408 WD40 repeat protein [F 100.0 4.2E-32 9.2E-37 314.3 45.6 605 27-831 40-714 (1080)
14 KOG0272 U4/U6 small nuclear ri 100.0 4.9E-34 1.1E-38 317.1 24.4 281 296-828 174-458 (459)
15 KOG0279 G protein beta subunit 100.0 3.3E-32 7.1E-37 289.2 33.1 291 491-882 5-313 (315)
16 KOG0315 G-protein beta subunit 100.0 3.1E-31 6.7E-36 277.1 28.9 273 529-887 10-293 (311)
17 KOG1063 RNA polymerase II elon 100.0 1.2E-28 2.5E-33 287.8 53.0 617 27-830 17-763 (764)
18 KOG0307 Vesicle coat complex C 100.0 1.2E-30 2.6E-35 320.6 32.1 588 502-1333 65-679 (1049)
19 KOG1408 WD40 repeat protein [F 100.0 5.9E-29 1.3E-33 288.4 39.5 549 23-784 77-714 (1080)
20 KOG0295 WD40 repeat-containing 100.0 1.1E-30 2.3E-35 286.0 23.6 284 495-880 102-404 (406)
21 KOG0276 Vesicle coat complex C 100.0 1.8E-27 3.9E-32 274.2 50.4 275 77-580 15-290 (794)
22 KOG0286 G-protein beta subunit 100.0 3.8E-28 8.1E-33 259.5 33.2 292 129-596 51-343 (343)
23 KOG0279 G protein beta subunit 100.0 3.4E-27 7.4E-32 251.2 33.6 220 53-335 4-230 (315)
24 KOG1539 WD repeat protein [Gen 100.0 2.8E-25 6E-30 264.2 53.4 566 12-828 61-646 (910)
25 KOG0273 Beta-transducin family 100.0 2.6E-27 5.6E-32 266.6 32.7 246 499-882 274-523 (524)
26 KOG0313 Microtubule binding pr 100.0 7.1E-28 1.5E-32 265.1 25.7 291 529-882 115-418 (423)
27 KOG0645 WD40 repeat protein [G 100.0 7.7E-27 1.7E-31 247.5 31.6 290 493-882 6-311 (312)
28 KOG0315 G-protein beta subunit 100.0 2.2E-27 4.8E-32 248.4 26.8 262 13-335 31-296 (311)
29 KOG0273 Beta-transducin family 100.0 6.2E-27 1.3E-31 263.5 32.0 325 177-662 176-502 (524)
30 KOG0281 Beta-TrCP (transducin 100.0 1.5E-28 3.3E-33 265.9 17.2 267 501-884 197-479 (499)
31 KOG0286 G-protein beta subunit 100.0 1.9E-26 4E-31 246.6 32.7 290 15-417 48-343 (343)
32 KOG2106 Uncharacterized conser 100.0 2.2E-24 4.8E-29 244.0 50.5 526 27-829 68-625 (626)
33 KOG1539 WD repeat protein [Gen 100.0 3.9E-24 8.4E-29 254.5 53.8 556 37-882 49-648 (910)
34 KOG0293 WD40 repeat-containing 100.0 1.2E-27 2.7E-32 264.6 22.5 298 54-547 214-513 (519)
35 KOG0296 Angio-associated migra 100.0 1.1E-25 2.3E-30 247.2 33.3 343 56-598 56-398 (399)
36 KOG0284 Polyadenylation factor 100.0 1.4E-27 3E-32 264.7 18.1 279 501-883 96-381 (464)
37 KOG0263 Transcription initiati 100.0 4.2E-27 9.2E-32 280.4 22.9 267 502-884 379-651 (707)
38 KOG0296 Angio-associated migra 99.9 1.5E-25 3.1E-30 246.2 32.6 338 129-642 60-397 (399)
39 KOG0285 Pleiotropic regulator 99.9 2.5E-26 5.4E-31 250.5 25.4 292 487-883 137-440 (460)
40 KOG2048 WD40 repeat protein [G 99.9 1.7E-23 3.7E-28 245.0 50.3 502 70-831 20-549 (691)
41 KOG0265 U5 snRNP-specific prot 99.9 4.3E-26 9.4E-31 244.8 26.2 278 496-879 42-335 (338)
42 KOG0281 Beta-TrCP (transducin 99.9 1.5E-27 3.1E-32 258.4 14.6 237 497-834 233-481 (499)
43 PLN00181 protein SPA1-RELATED; 99.9 2.9E-25 6.3E-30 290.4 39.3 286 495-881 477-792 (793)
44 KOG0282 mRNA splicing factor [ 99.9 7.4E-27 1.6E-31 264.2 19.9 283 496-880 209-503 (503)
45 cd00200 WD40 WD40 domain, foun 99.9 6.2E-25 1.3E-29 246.3 35.4 278 497-880 5-289 (289)
46 KOG0295 WD40 repeat-containing 99.9 4.2E-26 9E-31 250.2 24.1 251 497-829 146-405 (406)
47 KOG2041 WD40 repeat protein [G 99.9 8.6E-24 1.9E-28 245.4 43.9 113 1168-1283 856-984 (1189)
48 KOG0266 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 268.6 33.5 283 500-882 158-454 (456)
49 KOG0266 WD40 repeat-containing 99.9 5.4E-25 1.2E-29 269.3 32.1 257 17-333 153-415 (456)
50 KOG0263 Transcription initiati 99.9 5.4E-26 1.2E-30 271.0 21.2 252 8-327 365-649 (707)
51 KOG0292 Vesicle coat complex C 99.9 2.2E-25 4.8E-30 264.6 25.9 287 499-883 7-322 (1202)
52 KOG0276 Vesicle coat complex C 99.9 4.3E-25 9.4E-30 254.7 27.1 277 497-876 9-293 (794)
53 KOG1063 RNA polymerase II elon 99.9 1.5E-23 3.2E-28 245.5 39.3 591 10-783 89-763 (764)
54 KOG0282 mRNA splicing factor [ 99.9 3E-25 6.4E-30 251.3 22.3 297 55-545 205-503 (503)
55 KOG0645 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 223.0 32.9 213 55-327 5-225 (312)
56 KOG0292 Vesicle coat complex C 99.9 2.6E-22 5.7E-27 238.8 47.1 269 27-335 12-288 (1202)
57 cd00200 WD40 WD40 domain, foun 99.9 1.6E-23 3.6E-28 234.8 35.6 252 17-335 4-257 (289)
58 KOG0277 Peroxisomal targeting 99.9 1.6E-24 3.5E-29 227.8 22.8 258 537-881 36-308 (311)
59 KOG0265 U5 snRNP-specific prot 99.9 6.4E-24 1.4E-28 228.2 27.8 209 56-328 39-247 (338)
60 KOG0285 Pleiotropic regulator 99.9 6.1E-24 1.3E-28 231.9 25.8 303 8-421 133-441 (460)
61 KOG0293 WD40 repeat-containing 99.9 3.1E-24 6.8E-29 237.8 23.5 283 496-883 219-514 (519)
62 KOG0284 Polyadenylation factor 99.9 1.3E-24 2.8E-29 241.2 17.5 237 496-830 133-380 (464)
63 KOG0275 Conserved WD40 repeat- 99.9 8.5E-25 1.8E-29 234.8 15.5 279 396-828 220-507 (508)
64 KOG2106 Uncharacterized conser 99.9 2.3E-21 5.1E-26 219.7 43.9 505 23-782 103-625 (626)
65 PLN00181 protein SPA1-RELATED; 99.9 2.1E-22 4.6E-27 263.6 40.8 244 23-330 482-741 (793)
66 KOG0316 Conserved WD40 repeat- 99.9 1.2E-22 2.7E-27 211.3 26.1 280 497-882 13-299 (307)
67 KOG0274 Cdc4 and related F-box 99.9 8.5E-23 1.8E-27 249.8 29.1 260 530-887 219-487 (537)
68 KOG0274 Cdc4 and related F-box 99.9 8.7E-23 1.9E-27 249.7 29.1 236 497-835 245-487 (537)
69 KOG1538 Uncharacterized conser 99.9 3.7E-20 8E-25 214.2 48.3 147 26-209 14-161 (1081)
70 KOG0313 Microtubule binding pr 99.9 1.6E-22 3.5E-27 223.1 25.5 243 498-830 141-418 (423)
71 KOG0316 Conserved WD40 repeat- 99.9 1E-21 2.2E-26 204.5 25.7 252 56-422 9-260 (307)
72 KOG0268 Sof1-like rRNA process 99.9 7.6E-23 1.6E-27 224.2 16.5 284 493-888 58-351 (433)
73 KOG0278 Serine/threonine kinas 99.9 3.3E-22 7.2E-27 209.5 18.9 296 55-550 5-300 (334)
74 KOG2048 WD40 repeat protein [G 99.9 1.6E-18 3.4E-23 203.8 51.0 504 136-883 27-549 (691)
75 PTZ00421 coronin; Provisional 99.9 2.6E-20 5.6E-25 227.8 34.8 214 59-333 70-296 (493)
76 KOG1407 WD40 repeat protein [F 99.9 1.2E-20 2.5E-25 199.6 26.5 250 58-422 14-264 (313)
77 KOG0294 WD40 repeat-containing 99.9 8.9E-21 1.9E-25 205.3 26.2 240 496-833 38-284 (362)
78 KOG0278 Serine/threonine kinas 99.9 2.1E-21 4.6E-26 203.5 18.5 288 130-601 11-300 (334)
79 PTZ00420 coronin; Provisional 99.9 5E-20 1.1E-24 226.2 33.1 230 44-330 54-296 (568)
80 KOG0305 Anaphase promoting com 99.9 2E-20 4.3E-25 221.2 28.1 276 28-421 181-463 (484)
81 KOG0300 WD40 repeat-containing 99.9 1E-20 2.3E-25 203.3 22.9 311 484-884 131-478 (481)
82 KOG0973 Histone transcription 99.9 1.2E-20 2.5E-25 232.6 26.4 249 494-833 62-358 (942)
83 KOG0288 WD40 repeat protein Ti 99.9 1E-21 2.3E-26 218.7 15.2 278 497-880 171-459 (459)
84 KOG0301 Phospholipase A2-activ 99.9 2E-20 4.3E-25 219.7 25.5 278 493-883 6-289 (745)
85 KOG0647 mRNA export protein (c 99.9 5.2E-20 1.1E-24 198.4 26.3 257 502-857 28-304 (347)
86 KOG1407 WD40 repeat protein [F 99.9 6.2E-20 1.3E-24 194.2 26.4 269 496-873 15-293 (313)
87 KOG1446 Histone H3 (Lys4) meth 99.9 5.3E-19 1.2E-23 192.8 33.1 250 26-335 16-270 (311)
88 KOG0283 WD40 repeat-containing 99.9 3.1E-20 6.7E-25 224.1 25.7 255 494-883 259-577 (712)
89 KOG0275 Conserved WD40 repeat- 99.9 7.4E-21 1.6E-25 204.7 17.6 277 501-880 213-507 (508)
90 PTZ00421 coronin; Provisional 99.9 2.6E-19 5.7E-24 219.0 33.4 263 259-664 26-314 (493)
91 KOG0283 WD40 repeat-containing 99.9 3.3E-20 7.2E-25 223.8 24.9 214 57-335 259-540 (712)
92 PTZ00420 coronin; Provisional 99.9 1.6E-19 3.5E-24 221.8 30.9 249 534-915 49-319 (568)
93 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-18 2.5E-23 190.2 32.7 279 501-882 14-303 (311)
94 KOG0288 WD40 repeat protein Ti 99.8 1.3E-20 2.7E-25 210.1 17.6 238 25-325 220-459 (459)
95 KOG0640 mRNA cleavage stimulat 99.8 6.2E-20 1.3E-24 197.4 21.9 254 23-335 111-391 (430)
96 KOG0310 Conserved WD40 repeat- 99.8 1.5E-19 3.2E-24 205.9 25.9 297 9-420 11-310 (487)
97 KOG0305 Anaphase promoting com 99.8 6.2E-20 1.3E-24 217.0 23.5 238 24-327 217-461 (484)
98 KOG0643 Translation initiation 99.8 3.9E-19 8.5E-24 188.6 26.8 218 59-335 5-228 (327)
99 KOG0640 mRNA cleavage stimulat 99.8 1.1E-19 2.3E-24 195.6 22.7 283 497-882 108-426 (430)
100 KOG0264 Nucleosome remodeling 99.8 6.1E-20 1.3E-24 208.0 21.6 248 500-883 123-405 (422)
101 KOG0973 Histone transcription 99.8 3.6E-19 7.8E-24 219.6 29.8 290 502-883 14-356 (942)
102 KOG0643 Translation initiation 99.8 6E-19 1.3E-23 187.2 27.3 279 497-883 6-318 (327)
103 KOG0310 Conserved WD40 repeat- 99.8 2.4E-19 5.3E-24 204.1 24.5 238 27-329 71-311 (487)
104 KOG0301 Phospholipase A2-activ 99.8 2.6E-19 5.6E-24 210.4 24.4 214 528-831 70-289 (745)
105 KOG0641 WD40 repeat protein [G 99.8 5.6E-18 1.2E-22 175.1 29.9 246 500-882 88-349 (350)
106 KOG0277 Peroxisomal targeting 99.8 1.8E-19 3.8E-24 190.0 18.6 238 27-326 63-308 (311)
107 KOG1445 Tumor-specific antigen 99.8 1.9E-17 4.2E-22 191.1 36.6 232 37-327 45-293 (1012)
108 KOG2096 WD40 repeat protein [G 99.8 2.9E-18 6.3E-23 185.4 26.8 318 111-641 61-400 (420)
109 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 3.2E-17 6.9E-22 188.5 37.3 191 102-335 2-195 (300)
110 KOG0289 mRNA splicing factor [ 99.8 2.2E-18 4.7E-23 193.2 26.3 274 502-881 220-505 (506)
111 KOG0772 Uncharacterized conser 99.8 6.4E-19 1.4E-23 200.5 20.3 256 549-884 157-447 (641)
112 KOG0772 Uncharacterized conser 99.8 2.8E-18 6.1E-23 195.3 25.0 215 58-328 161-395 (641)
113 KOG1332 Vesicle coat complex C 99.8 1.6E-18 3.4E-23 182.0 20.3 251 556-883 8-287 (299)
114 KOG1445 Tumor-specific antigen 99.8 4.2E-17 9.1E-22 188.4 33.2 122 502-651 628-758 (1012)
115 KOG0300 WD40 repeat-containing 99.8 5.8E-18 1.3E-22 182.3 24.0 325 294-784 145-477 (481)
116 KOG0308 Conserved WD40 repeat- 99.8 6.1E-19 1.3E-23 205.8 17.3 279 528-883 36-328 (735)
117 KOG0299 U3 snoRNP-associated p 99.8 3.6E-18 7.7E-23 193.3 22.8 247 553-884 136-412 (479)
118 KOG0299 U3 snoRNP-associated p 99.8 8.4E-18 1.8E-22 190.3 25.4 283 499-882 140-456 (479)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.4E-17 1.4E-21 186.0 33.5 266 530-888 2-285 (300)
120 KOG0289 mRNA splicing factor [ 99.8 1.2E-17 2.5E-22 187.4 25.6 257 9-329 199-464 (506)
121 KOG0650 WD40 repeat nucleolar 99.8 7.6E-18 1.6E-22 194.7 24.7 289 496-879 395-732 (733)
122 KOG0264 Nucleosome remodeling 99.8 3.2E-18 7E-23 194.1 20.9 248 23-327 123-404 (422)
123 KOG0294 WD40 repeat-containing 99.8 2.6E-17 5.7E-22 178.6 25.6 249 12-329 31-283 (362)
124 KOG0646 WD40 repeat protein [G 99.8 7E-18 1.5E-22 191.4 21.2 225 500-805 80-330 (476)
125 KOG1332 Vesicle coat complex C 99.8 6.6E-18 1.4E-22 177.4 19.4 241 528-829 22-285 (299)
126 KOG1036 Mitotic spindle checkp 99.8 7.7E-17 1.7E-21 175.1 26.7 263 502-872 14-294 (323)
127 KOG2055 WD40 repeat protein [G 99.8 2.9E-17 6.3E-22 185.7 24.0 285 502-882 214-512 (514)
128 KOG0268 Sof1-like rRNA process 99.8 6E-18 1.3E-22 186.1 17.3 237 23-330 65-305 (433)
129 KOG0321 WD40 repeat-containing 99.8 2.9E-17 6.4E-22 191.5 23.7 307 528-884 63-393 (720)
130 KOG0308 Conserved WD40 repeat- 99.8 2.4E-17 5.3E-22 192.5 21.8 246 263-646 35-287 (735)
131 KOG0647 mRNA export protein (c 99.8 1.6E-16 3.5E-21 171.6 25.7 250 16-329 20-283 (347)
132 KOG0641 WD40 repeat protein [G 99.8 1.9E-15 4.1E-20 156.5 31.1 307 179-642 32-348 (350)
133 KOG0646 WD40 repeat protein [G 99.7 4.4E-17 9.6E-22 184.9 20.1 234 17-303 79-327 (476)
134 KOG0321 WD40 repeat-containing 99.7 8.6E-17 1.9E-21 187.7 22.9 217 100-328 63-302 (720)
135 KOG1963 WD40 repeat protein [G 99.7 2.4E-15 5.2E-20 182.5 35.9 476 26-649 18-588 (792)
136 KOG1273 WD40 repeat protein [G 99.7 2.1E-16 4.6E-21 171.1 23.3 200 77-327 25-226 (405)
137 KOG0267 Microtubule severing p 99.7 3.4E-18 7.3E-23 201.5 10.1 238 530-857 5-249 (825)
138 KOG0302 Ribosome Assembly prot 99.7 7E-17 1.5E-21 178.6 19.6 248 499-880 149-436 (440)
139 KOG4283 Transcription-coupled 99.7 2.9E-16 6.4E-21 168.5 22.2 199 502-782 144-364 (397)
140 KOG2055 WD40 repeat protein [G 99.7 6.8E-16 1.5E-20 174.7 24.8 289 179-642 213-511 (514)
141 KOG0639 Transducin-like enhanc 99.7 2.7E-16 5.9E-21 178.3 21.3 284 179-642 419-703 (705)
142 KOG0269 WD40 repeat-containing 99.7 5.3E-17 1.1E-21 193.1 15.4 197 499-781 131-338 (839)
143 KOG2096 WD40 repeat protein [G 99.7 4.1E-15 8.9E-20 161.3 27.3 288 495-880 80-400 (420)
144 KOG1538 Uncharacterized conser 99.7 5.7E-13 1.2E-17 155.4 44.4 172 77-307 14-186 (1081)
145 KOG1034 Transcriptional repres 99.7 6.2E-16 1.3E-20 168.7 19.0 279 500-882 88-383 (385)
146 KOG1036 Mitotic spindle checkp 99.7 5.7E-15 1.2E-19 160.7 26.2 189 76-322 14-202 (323)
147 COG2319 FOG: WD40 repeat [Gene 99.7 1E-12 2.2E-17 154.9 47.2 375 59-645 60-443 (466)
148 KOG0639 Transducin-like enhanc 99.7 8.9E-16 1.9E-20 174.2 19.4 242 26-330 421-666 (705)
149 KOG1274 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 179.2 27.1 246 22-328 11-263 (933)
150 KOG0270 WD40 repeat-containing 99.7 1.4E-15 3.1E-20 171.8 20.3 235 528-839 191-458 (463)
151 KOG4283 Transcription-coupled 99.7 5.6E-15 1.2E-19 158.8 23.6 274 22-335 41-331 (397)
152 KOG1034 Transcriptional repres 99.7 9.5E-16 2.1E-20 167.3 18.0 272 10-327 74-383 (385)
153 KOG2445 Nuclear pore complex c 99.7 1E-14 2.3E-19 158.1 25.8 242 498-829 10-317 (361)
154 COG2319 FOG: WD40 repeat [Gene 99.7 2E-12 4.2E-17 152.4 47.6 281 499-883 153-443 (466)
155 KOG0269 WD40 repeat-containing 99.7 4.5E-16 9.7E-21 185.3 16.0 234 28-323 91-336 (839)
156 KOG2445 Nuclear pore complex c 99.7 2.4E-14 5.1E-19 155.4 25.6 252 556-883 10-319 (361)
157 KOG1963 WD40 repeat protein [G 99.7 6.1E-13 1.3E-17 161.9 39.8 467 260-883 23-539 (792)
158 KOG0267 Microtubule severing p 99.6 2.2E-16 4.8E-21 186.4 9.8 218 498-805 25-249 (825)
159 KOG1273 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 156.9 22.6 251 26-328 25-323 (405)
160 KOG0302 Ribosome Assembly prot 99.6 9.7E-16 2.1E-20 169.7 13.3 161 23-211 210-379 (440)
161 KOG0650 WD40 repeat nucleolar 99.6 3.8E-14 8.1E-19 164.6 25.5 332 58-640 394-732 (733)
162 KOG1274 WD40 repeat protein [G 99.6 1.2E-13 2.6E-18 167.9 29.5 261 499-857 11-281 (933)
163 KOG0307 Vesicle coat complex C 99.6 2.5E-15 5.5E-20 186.5 13.9 253 18-329 57-329 (1049)
164 KOG4378 Nuclear protein COP1 [ 99.6 3.9E-14 8.5E-19 161.0 21.6 250 37-335 5-289 (673)
165 KOG4328 WD40 protein [Function 99.6 8.4E-14 1.8E-18 157.9 23.8 286 500-881 185-494 (498)
166 KOG4378 Nuclear protein COP1 [ 99.6 8.9E-14 1.9E-18 158.1 23.5 298 103-574 6-308 (673)
167 KOG1009 Chromatin assembly com 99.6 5.1E-14 1.1E-18 157.8 19.5 270 25-330 14-375 (434)
168 KOG0270 WD40 repeat-containing 99.6 1.1E-13 2.5E-18 156.6 21.0 194 98-327 189-404 (463)
169 KOG1188 WD40 repeat protein [G 99.6 2.5E-13 5.5E-18 149.5 22.9 199 37-289 42-248 (376)
170 KOG2919 Guanine nucleotide-bin 99.6 2.2E-13 4.8E-18 148.5 20.0 255 28-332 53-333 (406)
171 KOG4328 WD40 protein [Function 99.5 4.4E-13 9.5E-18 152.2 22.1 248 27-330 189-453 (498)
172 KOG1009 Chromatin assembly com 99.5 1.2E-12 2.6E-17 147.0 24.1 128 494-650 58-201 (434)
173 KOG0303 Actin-binding protein 99.5 2.2E-13 4.8E-18 151.9 16.5 210 59-329 76-296 (472)
174 KOG0644 Uncharacterized conser 99.5 5.4E-14 1.2E-18 168.0 11.7 282 496-882 185-468 (1113)
175 KOG1007 WD repeat protein TSSC 99.5 3.7E-12 8E-17 137.2 22.7 271 537-882 38-361 (370)
176 KOG1240 Protein kinase contain 99.5 1.1E-11 2.3E-16 154.4 29.0 228 49-335 1034-1281(1431)
177 KOG2919 Guanine nucleotide-bin 99.5 5.7E-12 1.2E-16 137.6 22.7 239 562-883 52-328 (406)
178 KOG0642 Cell-cycle nuclear pro 99.5 6.6E-13 1.4E-17 154.4 15.5 249 497-834 290-565 (577)
179 KOG0322 G-protein beta subunit 99.5 1.2E-12 2.5E-17 139.7 15.9 238 499-829 12-322 (323)
180 KOG0644 Uncharacterized conser 99.4 2.7E-13 5.8E-18 162.1 10.4 278 54-579 180-458 (1113)
181 KOG1517 Guanine nucleotide bin 99.4 2.2E-11 4.8E-16 149.2 25.9 163 101-328 1076-1240(1387)
182 KOG0290 Conserved WD40 repeat- 99.4 7.4E-12 1.6E-16 135.1 17.7 246 560-884 45-320 (364)
183 KOG1188 WD40 repeat protein [G 99.4 1.2E-11 2.6E-16 136.4 19.8 274 529-884 40-348 (376)
184 KOG1007 WD repeat protein TSSC 99.4 1.1E-11 2.3E-16 133.7 18.0 180 8-211 108-290 (370)
185 PRK01742 tolB translocation pr 99.4 1.8E-11 3.9E-16 149.6 22.1 234 538-857 183-426 (429)
186 KOG4497 Uncharacterized conser 99.3 6.7E-11 1.5E-15 129.4 21.1 226 29-326 13-239 (447)
187 PRK11028 6-phosphogluconolacto 99.3 8.8E-10 1.9E-14 130.1 32.2 231 38-328 6-259 (330)
188 KOG0771 Prolactin regulatory e 99.3 9E-12 1.9E-16 141.3 14.4 195 98-327 153-354 (398)
189 KOG4227 WD40 repeat protein [G 99.3 1.1E-10 2.4E-15 129.7 21.9 287 497-882 52-387 (609)
190 KOG1517 Guanine nucleotide bin 99.3 1.7E-10 3.8E-15 141.6 25.5 110 528-651 1220-1339(1387)
191 KOG0290 Conserved WD40 repeat- 99.3 2E-10 4.4E-15 124.2 22.5 285 502-879 45-362 (364)
192 PRK11028 6-phosphogluconolacto 99.3 7.3E-10 1.6E-14 130.8 29.8 244 26-327 36-304 (330)
193 KOG0322 G-protein beta subunit 99.3 3.4E-11 7.4E-16 128.7 16.3 252 16-326 8-322 (323)
194 KOG1310 WD40 repeat protein [G 99.3 1.6E-11 3.6E-16 141.4 14.7 244 17-292 45-312 (758)
195 KOG0649 WD40 repeat protein [G 99.3 1.7E-10 3.7E-15 121.9 20.7 137 717-883 126-275 (325)
196 KOG1334 WD40 repeat protein [G 99.3 3.4E-11 7.3E-16 137.9 15.5 266 23-335 141-432 (559)
197 KOG0303 Actin-binding protein 99.3 2.8E-10 6.1E-15 127.5 21.4 125 23-178 80-214 (472)
198 KOG1240 Protein kinase contain 99.3 6.4E-10 1.4E-14 138.9 26.7 188 116-333 1034-1231(1431)
199 PRK01742 tolB translocation pr 99.3 2.2E-10 4.7E-15 140.1 22.4 207 588-882 182-401 (429)
200 KOG1587 Cytoplasmic dynein int 99.3 9.9E-10 2.1E-14 134.6 27.0 282 538-883 221-517 (555)
201 KOG1587 Cytoplasmic dynein int 99.3 1.2E-09 2.5E-14 133.9 27.0 231 45-327 223-472 (555)
202 KOG0642 Cell-cycle nuclear pro 99.2 6.1E-11 1.3E-15 138.3 14.6 260 11-329 283-563 (577)
203 KOG4227 WD40 repeat protein [G 99.2 1.1E-09 2.4E-14 121.8 23.1 250 23-327 55-322 (609)
204 KOG3617 WD40 and TPR repeat-co 99.2 3E-07 6.4E-12 111.1 44.6 106 27-167 18-131 (1416)
205 KOG2139 WD40 repeat protein [G 99.2 3.2E-09 6.9E-14 118.1 25.9 151 27-208 101-266 (445)
206 PRK03629 tolB translocation pr 99.2 2.1E-09 4.5E-14 131.4 27.4 234 539-857 179-428 (429)
207 KOG0771 Prolactin regulatory e 99.2 2.2E-10 4.8E-15 130.1 16.8 199 28-284 148-355 (398)
208 KOG1912 WD40 repeat protein [G 99.2 2.4E-08 5.2E-13 119.8 34.3 103 37-165 81-184 (1062)
209 KOG1523 Actin-related protein 99.2 1.1E-09 2.4E-14 120.4 20.3 234 27-312 13-264 (361)
210 PF02239 Cytochrom_D1: Cytochr 99.2 6.8E-08 1.5E-12 115.2 35.7 340 150-653 6-356 (369)
211 PRK05137 tolB translocation pr 99.1 1.2E-08 2.6E-13 125.2 28.0 233 539-857 182-433 (435)
212 PRK04922 tolB translocation pr 99.1 1.3E-08 2.8E-13 124.8 28.2 213 588-883 182-412 (433)
213 PRK03629 tolB translocation pr 99.1 9.9E-09 2.1E-13 125.5 27.0 212 588-883 177-407 (429)
214 KOG1524 WD40 repeat-containing 99.1 1.2E-09 2.6E-14 126.0 17.1 173 611-877 102-281 (737)
215 KOG2110 Uncharacterized conser 99.1 1.5E-08 3.2E-13 113.6 24.4 162 13-210 81-248 (391)
216 KOG1523 Actin-related protein 99.1 6.5E-09 1.4E-13 114.4 21.1 252 501-880 10-276 (361)
217 PF02239 Cytochrom_D1: Cytochr 99.1 3E-07 6.5E-12 109.7 36.9 191 41-293 13-212 (369)
218 KOG2394 WD40 protein DMR-N9 [G 99.1 6.4E-09 1.4E-13 120.7 21.6 183 98-330 182-365 (636)
219 PRK02889 tolB translocation pr 99.1 1.1E-08 2.3E-13 125.1 24.6 236 539-857 176-425 (427)
220 PRK04922 tolB translocation pr 99.1 1.3E-08 2.7E-13 124.9 24.6 233 539-856 184-432 (433)
221 KOG0649 WD40 repeat protein [G 99.1 2.5E-08 5.4E-13 105.8 22.7 241 26-327 12-274 (325)
222 KOG1334 WD40 repeat protein [G 99.1 9.4E-10 2E-14 126.3 13.0 129 55-211 133-264 (559)
223 KOG2394 WD40 protein DMR-N9 [G 99.1 8.1E-09 1.8E-13 119.9 20.4 119 756-884 291-454 (636)
224 KOG4497 Uncharacterized conser 99.1 2.1E-08 4.6E-13 110.2 22.3 101 758-875 321-425 (447)
225 PRK05137 tolB translocation pr 99.1 2.3E-08 5E-13 122.7 25.7 204 45-318 183-397 (435)
226 PRK02889 tolB translocation pr 99.0 1.9E-08 4.2E-13 122.9 24.4 216 36-319 164-392 (427)
227 KOG2041 WD40 repeat protein [G 99.0 1.2E-05 2.7E-10 96.0 45.9 118 1118-1257 767-885 (1189)
228 KOG1272 WD40-repeat-containing 99.0 9.2E-10 2E-14 125.7 11.6 244 528-857 140-390 (545)
229 KOG2110 Uncharacterized conser 99.0 6.6E-08 1.4E-12 108.5 25.6 235 560-884 6-250 (391)
230 PF08662 eIF2A: Eukaryotic tra 99.0 1.4E-08 3E-13 110.4 19.3 109 77-211 61-180 (194)
231 KOG1310 WD40 repeat protein [G 99.0 7.5E-09 1.6E-13 119.9 16.6 177 57-282 43-230 (758)
232 KOG2139 WD40 repeat protein [G 99.0 2.1E-07 4.5E-12 104.0 26.7 228 13-287 130-387 (445)
233 KOG0974 WD-repeat protein WDR6 98.9 3E-08 6.6E-13 123.4 20.0 192 615-883 89-289 (967)
234 PF08662 eIF2A: Eukaryotic tra 98.9 7.7E-08 1.7E-12 104.6 19.6 111 539-664 37-154 (194)
235 KOG1524 WD40 repeat-containing 98.9 9E-08 1.9E-12 110.9 19.4 221 27-308 17-238 (737)
236 TIGR02658 TTQ_MADH_Hv methylam 98.8 4.3E-06 9.4E-11 98.0 32.9 238 44-335 27-338 (352)
237 KOG3881 Uncharacterized conser 98.8 1.2E-07 2.7E-12 107.0 18.5 135 501-662 202-340 (412)
238 TIGR02800 propeller_TolB tol-p 98.8 4.1E-07 8.9E-12 110.9 24.8 207 45-321 171-388 (417)
239 TIGR02800 propeller_TolB tol-p 98.8 6.6E-07 1.4E-11 109.1 26.4 213 539-831 170-398 (417)
240 KOG1272 WD40-repeat-containing 98.8 7.7E-09 1.7E-13 118.3 7.8 226 37-330 184-412 (545)
241 COG4946 Uncharacterized protei 98.8 0.00076 1.7E-08 78.3 47.2 106 502-632 402-507 (668)
242 KOG3881 Uncharacterized conser 98.8 2.2E-07 4.8E-12 105.0 18.7 226 537-835 77-325 (412)
243 PRK00178 tolB translocation pr 98.8 1.2E-06 2.6E-11 107.5 27.1 235 540-857 180-428 (430)
244 KOG2111 Uncharacterized conser 98.8 2.3E-06 4.9E-11 94.8 24.8 238 27-328 8-257 (346)
245 KOG2321 WD40 repeat protein [G 98.8 1.7E-06 3.8E-11 101.6 24.9 280 500-882 50-343 (703)
246 KOG1354 Serine/threonine prote 98.7 4.3E-07 9.3E-12 100.9 18.9 269 24-330 25-362 (433)
247 KOG2321 WD40 repeat protein [G 98.7 1.5E-06 3.2E-11 102.1 23.6 279 136-579 53-333 (703)
248 KOG4547 WD40 repeat-containing 98.7 2.4E-07 5.2E-12 109.8 16.6 210 622-884 2-222 (541)
249 KOG1354 Serine/threonine prote 98.7 7.6E-07 1.6E-11 99.0 18.9 247 528-833 36-362 (433)
250 PRK04792 tolB translocation pr 98.7 4.3E-06 9.4E-11 102.9 26.8 235 540-857 199-447 (448)
251 KOG2111 Uncharacterized conser 98.7 5.7E-06 1.2E-10 91.7 24.2 179 44-285 75-258 (346)
252 TIGR03300 assembly_YfgL outer 98.6 3.4E-05 7.3E-10 93.0 32.8 195 101-335 65-267 (377)
253 PRK01029 tolB translocation pr 98.6 5.1E-06 1.1E-10 101.6 25.4 234 539-857 165-425 (428)
254 PRK01029 tolB translocation pr 98.6 4.5E-06 9.8E-11 102.0 24.9 205 534-805 204-425 (428)
255 TIGR02658 TTQ_MADH_Hv methylam 98.6 8E-05 1.7E-09 87.5 34.0 272 539-888 27-336 (352)
256 PRK00178 tolB translocation pr 98.6 4.3E-06 9.3E-11 102.6 24.7 218 500-805 197-428 (430)
257 PRK04792 tolB translocation pr 98.6 5.5E-06 1.2E-10 102.0 25.6 210 590-882 198-425 (448)
258 KOG4547 WD40 repeat-containing 98.6 3.3E-06 7.1E-11 100.4 21.8 193 99-327 3-220 (541)
259 KOG0974 WD-repeat protein WDR6 98.6 6.7E-07 1.5E-11 111.8 16.7 195 30-285 93-290 (967)
260 KOG2315 Predicted translation 98.6 6.6E-05 1.4E-09 89.0 31.1 131 501-663 270-410 (566)
261 TIGR03300 assembly_YfgL outer 98.6 0.00013 2.8E-09 87.9 34.8 232 35-334 65-304 (377)
262 KOG2315 Predicted translation 98.5 6.1E-06 1.3E-10 97.4 21.6 241 29-330 130-392 (566)
263 PF04762 IKI3: IKI3 family; I 98.5 0.0017 3.7E-08 86.1 46.0 263 528-882 220-519 (928)
264 PF10282 Lactonase: Lactonase, 98.5 0.0013 2.9E-08 78.2 41.4 193 111-327 13-222 (345)
265 PF10282 Lactonase: Lactonase, 98.5 0.00031 6.8E-09 83.6 34.3 252 26-330 38-327 (345)
266 COG5354 Uncharacterized protei 98.4 0.00037 8.1E-09 81.8 31.0 182 77-315 34-240 (561)
267 PF04762 IKI3: IKI3 family; I 98.4 0.034 7.3E-07 74.1 57.8 214 76-330 76-336 (928)
268 COG5354 Uncharacterized protei 98.4 0.00045 9.7E-09 81.2 30.3 247 27-328 35-307 (561)
269 KOG0280 Uncharacterized conser 98.3 1.8E-05 3.9E-10 86.9 17.6 147 718-884 134-286 (339)
270 PF07433 DUF1513: Protein of u 98.3 0.00013 2.8E-09 83.0 24.8 233 27-317 7-276 (305)
271 PLN02919 haloacid dehalogenase 98.3 0.00019 4.2E-09 96.6 30.6 255 528-833 579-891 (1057)
272 COG4946 Uncharacterized protei 98.3 0.0001 2.3E-09 85.2 23.3 227 33-317 275-508 (668)
273 KOG3914 WD repeat protein WDR4 98.3 4.5E-06 9.7E-11 95.3 12.3 77 752-835 148-228 (390)
274 KOG2314 Translation initiation 98.3 0.0009 1.9E-08 79.2 29.9 109 183-327 214-334 (698)
275 KOG0280 Uncharacterized conser 98.2 1.7E-05 3.6E-10 87.2 14.3 148 29-204 126-279 (339)
276 KOG2314 Translation initiation 98.2 0.00057 1.2E-08 80.8 27.1 154 12-189 195-356 (698)
277 PLN02919 haloacid dehalogenase 98.2 0.00096 2.1E-08 90.0 32.3 265 28-330 571-891 (1057)
278 PRK04043 tolB translocation pr 98.1 0.00066 1.4E-08 82.7 26.3 189 77-325 189-396 (419)
279 PF13360 PQQ_2: PQQ-like domai 98.1 0.0022 4.8E-08 71.6 28.7 187 109-333 1-197 (238)
280 PRK11138 outer membrane biogen 98.1 0.0029 6.2E-08 76.9 31.7 200 101-334 69-281 (394)
281 KOG1409 Uncharacterized conser 98.1 7.7E-05 1.7E-09 83.6 15.8 244 551-884 16-272 (404)
282 PF13360 PQQ_2: PQQ-like domai 98.1 0.0015 3.2E-08 73.0 26.3 232 43-334 2-237 (238)
283 KOG0309 Conserved WD40 repeat- 98.1 6.1E-05 1.3E-09 90.9 15.4 208 26-289 26-238 (1081)
284 PF12931 Sec16_C: Sec23-bindin 98.0 2.5E-05 5.4E-10 90.0 11.2 127 1118-1254 2-146 (284)
285 KOG1064 RAVE (regulator of V-A 98.0 1.7E-05 3.7E-10 103.5 10.5 188 612-883 2207-2399(2439)
286 PF15492 Nbas_N: Neuroblastoma 98.0 0.0032 6.9E-08 70.0 26.3 146 30-200 3-167 (282)
287 KOG3914 WD repeat protein WDR4 98.0 7.6E-05 1.6E-09 85.5 13.7 149 715-886 72-227 (390)
288 KOG0309 Conserved WD40 repeat- 98.0 5.3E-05 1.1E-09 91.4 12.5 240 529-832 81-341 (1081)
289 KOG1920 IkappaB kinase complex 97.9 0.18 4E-06 65.7 52.0 92 1177-1271 893-986 (1265)
290 PRK11138 outer membrane biogen 97.9 0.011 2.3E-07 72.0 32.6 195 100-334 119-319 (394)
291 PF00400 WD40: WD domain, G-be 97.9 2.3E-05 5E-10 61.4 5.9 39 54-117 1-39 (39)
292 KOG1409 Uncharacterized conser 97.9 0.00012 2.6E-09 82.0 13.4 251 491-832 14-272 (404)
293 PF04053 Coatomer_WDAD: Coatom 97.9 0.0048 1E-07 75.3 28.1 98 1108-1217 344-442 (443)
294 COG2706 3-carboxymuconate cycl 97.9 0.042 9E-07 63.1 33.2 195 110-328 15-222 (346)
295 PRK04043 tolB translocation pr 97.9 0.0019 4E-08 78.9 24.6 125 528-664 198-329 (419)
296 KOG1064 RAVE (regulator of V-A 97.9 3.2E-05 6.9E-10 101.1 9.5 187 98-335 2217-2406(2439)
297 KOG4190 Uncharacterized conser 97.9 2.9E-05 6.3E-10 90.3 8.1 191 102-330 748-951 (1034)
298 PF15492 Nbas_N: Neuroblastoma 97.9 0.016 3.4E-07 64.7 28.6 75 259-335 3-80 (282)
299 PF08450 SGL: SMP-30/Gluconola 97.8 0.031 6.7E-07 63.1 32.0 225 29-316 4-244 (246)
300 KOG1920 IkappaB kinase complex 97.8 0.00024 5.2E-09 90.9 15.1 189 1122-1330 891-1092(1265)
301 COG5170 CDC55 Serine/threonine 97.7 0.00014 3E-09 80.2 9.9 234 24-294 26-321 (460)
302 COG5170 CDC55 Serine/threonine 97.7 0.00081 1.8E-08 74.3 15.6 255 502-831 27-368 (460)
303 COG2706 3-carboxymuconate cycl 97.7 0.039 8.5E-07 63.3 29.3 252 25-330 40-326 (346)
304 PF07433 DUF1513: Protein of u 97.7 0.034 7.3E-07 63.8 28.8 116 531-653 130-256 (305)
305 PF00400 WD40: WD domain, G-be 97.7 0.00012 2.5E-09 57.4 6.1 37 604-641 3-39 (39)
306 KOG4190 Uncharacterized conser 97.6 0.00019 4E-09 83.9 10.0 160 23-211 734-907 (1034)
307 PF06433 Me-amine-dh_H: Methyl 97.6 0.036 7.7E-07 64.3 26.9 257 29-335 40-328 (342)
308 PF08450 SGL: SMP-30/Gluconola 97.5 0.1 2.3E-06 58.8 29.4 204 528-805 11-236 (246)
309 KOG4714 Nucleoporin [Nuclear s 97.5 0.0058 1.2E-07 66.7 17.5 73 132-208 34-117 (319)
310 PF06433 Me-amine-dh_H: Methyl 97.5 0.054 1.2E-06 62.8 26.6 273 44-425 17-326 (342)
311 KOG4532 WD40-like repeat conta 97.3 0.017 3.6E-07 63.4 18.9 186 529-786 84-285 (344)
312 KOG4532 WD40-like repeat conta 97.3 0.019 4.2E-07 62.9 19.4 198 100-331 83-286 (344)
313 KOG1645 RING-finger-containing 97.2 0.012 2.5E-07 67.9 17.6 94 46-169 175-268 (463)
314 KOG4714 Nucleoporin [Nuclear s 97.2 0.0039 8.4E-08 68.0 13.1 69 758-831 182-255 (319)
315 KOG2695 WD40 repeat protein [G 97.2 0.00093 2E-08 75.2 8.5 113 533-660 228-348 (425)
316 PF12234 Rav1p_C: RAVE protein 97.2 0.39 8.5E-06 60.6 32.1 140 1116-1262 408-553 (631)
317 KOG1275 PAB-dependent poly(A) 97.1 0.0077 1.7E-07 75.3 14.9 189 30-281 143-340 (1118)
318 KOG2695 WD40 repeat protein [G 97.0 0.0017 3.8E-08 73.1 8.3 144 721-886 228-380 (425)
319 KOG3616 Selective LIM binding 97.0 0.0065 1.4E-07 73.7 12.9 135 1116-1261 607-743 (1636)
320 KOG2066 Vacuolar assembly/sort 96.9 0.0093 2E-07 74.0 13.8 141 717-888 49-193 (846)
321 KOG2066 Vacuolar assembly/sort 96.9 0.014 3.1E-07 72.5 14.8 170 586-832 55-235 (846)
322 KOG1832 HIV-1 Vpr-binding prot 96.9 0.00069 1.5E-08 83.4 3.5 210 25-315 1102-1319(1516)
323 KOG1275 PAB-dependent poly(A) 96.8 0.016 3.5E-07 72.6 14.3 140 718-880 188-340 (1118)
324 cd00216 PQQ_DH Dehydrogenases 96.7 0.48 1E-05 59.3 27.2 74 102-177 111-193 (488)
325 KOG1832 HIV-1 Vpr-binding prot 96.6 0.0015 3.2E-08 80.7 4.1 122 497-651 1097-1221(1516)
326 KOG2114 Vacuolar assembly/sort 96.5 0.22 4.9E-06 62.7 21.9 204 528-801 34-263 (933)
327 cd00216 PQQ_DH Dehydrogenases 96.4 0.79 1.7E-05 57.4 26.3 63 273-335 364-432 (488)
328 PF11768 DUF3312: Protein of u 96.4 0.11 2.4E-06 63.4 17.4 94 591-738 237-332 (545)
329 PF06977 SdiA-regulated: SdiA- 96.4 0.62 1.3E-05 52.7 22.5 199 77-317 23-240 (248)
330 PF11768 DUF3312: Protein of u 96.2 1.1 2.5E-05 54.9 24.9 71 255-329 261-331 (545)
331 KOG3616 Selective LIM binding 96.2 0.024 5.2E-07 69.1 10.5 148 1119-1277 714-877 (1636)
332 KOG1645 RING-finger-containing 96.1 0.17 3.7E-06 58.7 16.1 82 496-601 188-269 (463)
333 KOG1008 Uncharacterized conser 96.0 0.0044 9.5E-08 74.9 3.4 144 725-883 127-276 (783)
334 PRK02888 nitrous-oxide reducta 96.0 0.68 1.5E-05 58.1 22.2 211 35-284 140-405 (635)
335 COG3490 Uncharacterized protei 95.9 0.82 1.8E-05 51.3 19.7 245 29-327 72-348 (366)
336 PF14583 Pectate_lyase22: Olig 95.9 1.8 3.9E-05 51.5 23.9 228 28-318 39-303 (386)
337 KOG0882 Cyclophilin-related pe 95.8 0.031 6.7E-07 65.3 8.9 221 23-291 8-239 (558)
338 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.8 7.5 0.00016 49.2 30.9 74 101-177 120-199 (527)
339 KOG3617 WD40 and TPR repeat-co 95.8 0.054 1.2E-06 67.2 11.0 139 1115-1262 1039-1183(1416)
340 smart00320 WD40 WD40 repeats. 95.6 0.028 6E-07 41.5 5.2 39 54-117 2-40 (40)
341 COG3391 Uncharacterized conser 95.4 8.2 0.00018 46.7 28.2 195 99-330 83-286 (381)
342 KOG0882 Cyclophilin-related pe 95.3 0.083 1.8E-06 61.9 10.0 201 558-833 8-234 (558)
343 PF08596 Lgl_C: Lethal giant l 95.3 5.2 0.00011 48.6 25.8 230 77-330 3-293 (395)
344 KOG4640 Anaphase-promoting com 95.2 0.057 1.2E-06 65.8 8.8 92 25-144 21-115 (665)
345 PF00930 DPPIV_N: Dipeptidyl p 95.1 10 0.00022 45.4 30.0 64 99-170 2-74 (353)
346 PF04841 Vps16_N: Vps16, N-ter 95.1 5.3 0.00011 48.9 25.5 53 255-308 218-270 (410)
347 KOG4649 PQQ (pyrrolo-quinoline 95.1 7.1 0.00015 43.5 30.5 135 37-207 25-162 (354)
348 COG0823 TolB Periplasmic compo 95.1 0.5 1.1E-05 57.7 16.5 137 111-287 218-362 (425)
349 KOG2114 Vacuolar assembly/sort 95.1 0.81 1.8E-05 58.0 18.1 192 99-327 33-243 (933)
350 PF04053 Coatomer_WDAD: Coatom 95.1 3 6.4E-05 51.4 23.0 115 1119-1275 326-440 (443)
351 KOG1008 Uncharacterized conser 95.0 0.015 3.3E-07 70.4 3.1 155 26-209 58-224 (783)
352 PF00780 CNH: CNH domain; Int 94.9 7.7 0.00017 44.3 25.2 100 100-211 6-123 (275)
353 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 13 0.00028 45.3 28.1 102 29-143 6-117 (415)
354 PF06977 SdiA-regulated: SdiA- 94.7 5.9 0.00013 44.9 22.7 211 16-280 15-247 (248)
355 PF03178 CPSF_A: CPSF A subuni 94.7 2.3 5.1E-05 50.0 20.5 185 44-283 2-202 (321)
356 smart00320 WD40 WD40 repeats. 94.6 0.085 1.9E-06 38.7 5.4 30 612-641 11-40 (40)
357 PRK02888 nitrous-oxide reducta 94.5 4.8 0.0001 50.8 22.9 220 96-328 136-405 (635)
358 PF14783 BBS2_Mid: Ciliary BBS 94.2 0.9 1.9E-05 44.5 12.4 92 529-639 15-110 (111)
359 PRK13616 lipoprotein LpqB; Pro 94.1 2.6 5.7E-05 53.8 20.2 97 560-664 350-458 (591)
360 PF00930 DPPIV_N: Dipeptidyl p 94.0 5.4 0.00012 47.7 21.8 251 26-315 44-345 (353)
361 KOG4640 Anaphase-promoting com 93.9 0.23 5E-06 60.8 9.6 93 76-189 21-115 (665)
362 PF15390 DUF4613: Domain of un 93.8 1.3 2.9E-05 54.2 15.7 116 77-208 58-184 (671)
363 COG0823 TolB Periplasmic compo 93.6 1.3 2.7E-05 54.3 15.4 145 136-317 194-345 (425)
364 PF08596 Lgl_C: Lethal giant l 93.4 4.2 9.1E-05 49.4 19.3 241 503-835 3-295 (395)
365 PF14783 BBS2_Mid: Ciliary BBS 93.3 3 6.5E-05 40.9 14.2 94 766-877 16-109 (111)
366 KOG4649 PQQ (pyrrolo-quinoline 93.1 18 0.00039 40.5 27.6 100 102-211 24-124 (354)
367 PF12657 TFIIIC_delta: Transcr 93.1 0.55 1.2E-05 50.2 10.0 86 26-119 6-121 (173)
368 TIGR03074 PQQ_membr_DH membran 92.9 15 0.00033 48.3 24.6 63 272-335 411-485 (764)
369 PF02897 Peptidase_S9_N: Proly 91.8 38 0.00082 41.3 25.3 112 28-169 127-262 (414)
370 KOG2079 Vacuolar assembly/sort 91.6 0.54 1.2E-05 60.8 8.6 79 36-141 100-179 (1206)
371 COG3386 Gluconolactonase [Carb 91.5 31 0.00066 40.5 22.5 123 528-664 36-173 (307)
372 PF04841 Vps16_N: Vps16, N-ter 91.4 17 0.00038 44.4 21.4 179 112-327 62-246 (410)
373 KOG2079 Vacuolar assembly/sort 91.2 0.76 1.6E-05 59.5 9.4 111 758-884 92-205 (1206)
374 KOG3621 WD40 repeat-containing 90.8 1.2 2.6E-05 55.5 10.3 114 758-883 38-155 (726)
375 PRK13616 lipoprotein LpqB; Pro 90.8 17 0.00038 46.5 21.2 154 137-324 399-565 (591)
376 COG3204 Uncharacterized protei 90.8 20 0.00042 41.1 18.9 179 77-299 87-278 (316)
377 PF02897 Peptidase_S9_N: Proly 90.7 5.1 0.00011 48.9 16.1 104 528-633 134-246 (414)
378 PF12894 Apc4_WD40: Anaphase-p 90.5 0.6 1.3E-05 38.5 5.2 33 501-550 11-43 (47)
379 COG3386 Gluconolactonase [Carb 90.1 45 0.00098 39.1 24.6 228 30-318 30-276 (307)
380 PF12931 Sec16_C: Sec23-bindin 90.0 0.8 1.7E-05 53.1 7.7 77 1184-1261 2-83 (284)
381 PF08553 VID27: VID27 cytoplas 89.8 2.1 4.6E-05 55.6 11.8 101 37-167 545-647 (794)
382 PF08553 VID27: VID27 cytoplas 89.3 5.9 0.00013 51.7 15.3 141 43-209 503-646 (794)
383 PF12894 Apc4_WD40: Anaphase-p 89.0 0.64 1.4E-05 38.3 4.3 34 136-173 13-46 (47)
384 PF04097 Nic96: Nup93/Nic96; 88.7 1.7 3.7E-05 55.9 10.1 138 1119-1262 266-452 (613)
385 PF00780 CNH: CNH domain; Int 88.4 51 0.0011 37.6 26.5 101 528-642 6-121 (275)
386 TIGR03075 PQQ_enz_alc_DH PQQ-d 87.4 94 0.002 39.5 37.4 72 101-177 69-148 (527)
387 KOG3621 WD40 repeat-containing 87.2 1.9 4E-05 53.9 8.4 104 715-831 43-155 (726)
388 PHA02713 hypothetical protein; 85.9 44 0.00095 42.7 20.3 65 761-833 460-536 (557)
389 KOG4441 Proteins containing BT 85.5 37 0.00081 43.4 19.3 106 528-642 284-403 (571)
390 PF03178 CPSF_A: CPSF A subuni 85.3 25 0.00055 41.3 16.7 150 27-207 91-262 (321)
391 KOG2444 WD40 repeat protein [G 84.7 2.3 4.9E-05 46.7 6.7 100 717-831 70-178 (238)
392 COG5290 IkappaB kinase complex 84.4 3.8 8.3E-05 51.6 9.1 107 1165-1274 923-1032(1243)
393 KOG2444 WD40 repeat protein [G 84.4 3 6.5E-05 45.8 7.4 65 264-330 69-135 (238)
394 PF10647 Gmad1: Lipoprotein Lp 84.2 44 0.00095 38.0 17.4 150 17-198 14-183 (253)
395 PF05694 SBP56: 56kDa selenium 84.0 1.1E+02 0.0024 37.3 23.5 179 99-293 139-355 (461)
396 KOG2280 Vacuolar assembly/sort 82.9 15 0.00032 46.7 13.3 112 1115-1228 688-808 (829)
397 PF12234 Rav1p_C: RAVE protein 82.2 14 0.00031 47.0 13.3 123 12-165 19-154 (631)
398 PHA02713 hypothetical protein; 82.2 33 0.00072 43.8 17.0 28 759-786 507-536 (557)
399 TIGR03074 PQQ_membr_DH membran 82.2 1.2E+02 0.0026 40.2 22.2 62 150-211 195-279 (764)
400 PF14870 PSII_BNR: Photosynthe 81.7 35 0.00076 39.9 15.4 159 11-207 135-301 (302)
401 KOG4441 Proteins containing BT 80.5 76 0.0016 40.7 19.2 103 717-833 381-502 (571)
402 KOG2395 Protein involved in va 80.3 22 0.00049 43.4 13.1 107 531-642 348-458 (644)
403 PF14781 BBS2_N: Ciliary BBSom 80.3 23 0.0005 36.0 11.3 104 101-210 10-125 (136)
404 PF08728 CRT10: CRT10; InterP 80.1 48 0.001 42.9 16.9 176 17-209 33-245 (717)
405 PHA03098 kelch-like protein; P 79.9 82 0.0018 39.9 19.5 105 529-642 295-413 (534)
406 PF14781 BBS2_N: Ciliary BBSom 79.1 54 0.0012 33.5 13.5 115 37-177 13-135 (136)
407 PF14655 RAB3GAP2_N: Rab3 GTPa 79.0 18 0.00039 44.1 12.2 74 98-176 316-407 (415)
408 PLN00033 photosystem II stabil 78.0 98 0.0021 37.8 18.2 142 29-207 243-396 (398)
409 PLN03081 pentatricopeptide (PP 77.2 19 0.00042 47.2 13.0 94 1115-1214 193-314 (697)
410 COG3204 Uncharacterized protei 77.1 1.1E+02 0.0023 35.4 16.6 162 24-212 85-265 (316)
411 KOG2395 Protein involved in va 75.3 35 0.00075 41.9 12.8 98 720-830 397-500 (644)
412 PF10313 DUF2415: Uncharacteri 74.4 7.7 0.00017 31.4 4.9 34 795-831 1-34 (43)
413 PF07569 Hira: TUP1-like enhan 72.3 19 0.00041 40.1 9.4 67 758-831 15-96 (219)
414 PF10313 DUF2415: Uncharacteri 71.9 9.7 0.00021 30.8 5.0 34 77-121 2-35 (43)
415 KOG4499 Ca2+-binding protein R 71.6 1.8E+02 0.0038 32.6 18.9 43 761-803 219-262 (310)
416 KOG0553 TPR repeat-containing 70.4 19 0.00041 41.4 8.8 28 1120-1147 90-120 (304)
417 PF10647 Gmad1: Lipoprotein Lp 70.0 84 0.0018 35.8 14.3 109 77-207 25-141 (253)
418 COG3490 Uncharacterized protei 69.2 1.1E+02 0.0023 35.2 13.9 104 528-631 124-243 (366)
419 PRK15174 Vi polysaccharide exp 67.6 90 0.0019 40.8 15.7 31 1115-1145 148-181 (656)
420 TIGR02604 Piru_Ver_Nterm putat 67.4 1.2E+02 0.0025 36.7 15.5 18 136-156 125-142 (367)
421 PHA03098 kelch-like protein; P 66.8 2.5E+02 0.0055 35.5 19.3 55 727-787 406-468 (534)
422 PF05096 Glu_cyclase_2: Glutam 66.6 1.3E+02 0.0028 34.5 14.3 123 43-197 109-248 (264)
423 COG3391 Uncharacterized conser 65.9 3.1E+02 0.0066 33.2 25.6 109 529-649 86-195 (381)
424 PF14938 SNAP: Soluble NSF att 65.9 26 0.00056 40.5 9.3 116 1164-1285 114-254 (282)
425 PF10168 Nup88: Nuclear pore c 65.6 92 0.002 41.0 14.8 70 99-168 94-180 (717)
426 PLN03081 pentatricopeptide (PP 65.4 39 0.00084 44.5 11.8 138 1115-1263 395-554 (697)
427 KOG3036 Protein involved in ce 65.2 77 0.0017 35.6 11.7 140 1109-1287 136-289 (293)
428 PRK10115 protease 2; Provision 62.5 4.8E+02 0.01 34.3 29.5 109 528-642 137-254 (686)
429 PF05935 Arylsulfotrans: Aryls 62.3 80 0.0017 39.5 13.2 154 30-209 153-366 (477)
430 PRK13684 Ycf48-like protein; P 62.0 3.3E+02 0.0072 32.3 17.8 148 26-208 174-329 (334)
431 KOG1916 Nuclear protein, conta 60.1 3.7 7.9E-05 52.5 0.8 140 45-207 154-299 (1283)
432 KOG1840 Kinesin light chain [C 59.9 3.5E+02 0.0077 34.1 17.9 146 1094-1247 221-390 (508)
433 PLN03218 maturation of RBCL 1; 59.6 87 0.0019 43.2 13.6 86 1115-1201 546-638 (1060)
434 PF15390 DUF4613: Domain of un 59.5 54 0.0012 41.0 10.3 113 27-167 59-186 (671)
435 PF09295 ChAPs: ChAPs (Chs5p-A 59.4 80 0.0017 38.4 11.9 54 1196-1262 240-293 (395)
436 PRK14720 transcript cleavage f 58.6 76 0.0017 42.5 12.3 145 1109-1269 29-188 (906)
437 PRK11788 tetratricopeptide rep 58.6 1.8E+02 0.0038 34.8 15.1 30 1112-1141 142-174 (389)
438 PF11715 Nup160: Nucleoporin N 58.0 41 0.00088 42.9 9.8 73 263-335 156-256 (547)
439 PF12569 NARP1: NMDA receptor- 57.9 74 0.0016 40.1 11.7 45 1108-1152 35-82 (517)
440 PF14727 PHTB1_N: PTHB1 N-term 57.8 4.4E+02 0.0096 32.4 28.2 103 100-208 36-161 (418)
441 smart00299 CLH Clathrin heavy 57.2 2.2E+02 0.0048 28.7 13.6 20 1194-1213 73-92 (140)
442 KOG4460 Nuclear pore complex, 57.0 1.4E+02 0.003 36.9 12.8 80 98-177 112-208 (741)
443 PF12768 Rax2: Cortical protei 57.0 98 0.0021 35.9 11.6 80 112-199 17-108 (281)
444 PHA02790 Kelch-like protein; P 56.8 3.5E+02 0.0075 33.9 17.6 185 528-786 271-473 (480)
445 PRK15174 Vi polysaccharide exp 56.4 2.2E+02 0.0048 37.2 16.3 32 1113-1144 112-146 (656)
446 PF14870 PSII_BNR: Photosynthe 56.0 4E+02 0.0086 31.3 20.2 106 77-206 146-257 (302)
447 TIGR03118 PEPCTERM_chp_1 conse 55.4 4E+02 0.0087 31.2 23.5 131 27-167 25-170 (336)
448 TIGR02917 PEP_TPR_lipo putativ 55.3 2.4E+02 0.0051 37.4 16.9 24 1115-1138 94-117 (899)
449 KOG2280 Vacuolar assembly/sort 55.3 56 0.0012 41.9 9.7 80 1174-1262 725-808 (829)
450 PLN03077 Protein ECB2; Provisi 55.3 93 0.002 42.0 13.0 165 1117-1283 360-587 (857)
451 KOG4499 Ca2+-binding protein R 54.6 2.4E+02 0.0052 31.6 13.1 140 28-188 112-262 (310)
452 PF14761 HPS3_N: Hermansky-Pud 54.2 2.3E+02 0.0049 31.5 13.1 54 263-319 25-81 (215)
453 PRK10747 putative protoheme IX 54.0 4.6E+02 0.01 31.9 17.7 86 1185-1270 271-363 (398)
454 PF11715 Nup160: Nucleoporin N 53.6 46 0.001 42.4 9.3 77 101-177 158-258 (547)
455 PRK11447 cellulose synthase su 53.4 1.4E+02 0.0029 42.0 14.4 102 1109-1216 60-173 (1157)
456 PRK11447 cellulose synthase su 53.0 3.1E+02 0.0066 38.6 17.8 32 1112-1143 496-530 (1157)
457 KOG0985 Vesicle coat protein c 52.9 3.3E+02 0.0072 36.6 15.8 80 1226-1324 1197-1291(1666)
458 PF05096 Glu_cyclase_2: Glutam 52.8 4.1E+02 0.0089 30.5 25.0 199 55-315 34-248 (264)
459 PF14583 Pectate_lyase22: Olig 52.3 5.1E+02 0.011 31.4 27.7 89 528-629 46-140 (386)
460 PF14938 SNAP: Soluble NSF att 50.6 76 0.0016 36.6 9.6 22 1241-1262 159-180 (282)
461 PRK15179 Vi polysaccharide bio 50.1 1.6E+02 0.0035 38.7 13.3 127 1109-1250 84-214 (694)
462 KOG4460 Nuclear pore complex, 48.8 3.1E+02 0.0067 34.1 13.9 36 254-289 166-204 (741)
463 KOG2377 Uncharacterized conser 48.7 2E+02 0.0044 35.0 12.3 78 792-884 64-142 (657)
464 TIGR02276 beta_rpt_yvtn 40-res 48.3 57 0.0012 25.3 5.7 32 263-294 1-33 (42)
465 TIGR02917 PEP_TPR_lipo putativ 48.2 2.4E+02 0.0053 37.3 15.3 20 1243-1262 165-184 (899)
466 PLN03218 maturation of RBCL 1; 47.9 2E+02 0.0044 39.8 14.2 81 1115-1202 618-709 (1060)
467 PRK11788 tetratricopeptide rep 47.9 3.6E+02 0.0077 32.1 15.4 18 1245-1262 222-239 (389)
468 TIGR03118 PEPCTERM_chp_1 conse 47.6 5.3E+02 0.011 30.3 20.3 123 504-642 25-169 (336)
469 KOG2076 RNA polymerase III tra 45.5 86 0.0019 41.1 9.4 80 1168-1249 143-232 (895)
470 COG5209 RCD1 Uncharacterized p 45.2 2.3E+02 0.005 31.4 11.2 117 1118-1274 170-294 (315)
471 PF07569 Hira: TUP1-like enhan 45.2 1E+02 0.0022 34.3 9.2 57 150-208 23-93 (219)
472 PF10607 CLTH: CTLH/CRA C-term 44.9 98 0.0021 31.7 8.4 26 1115-1140 5-30 (145)
473 PF12657 TFIIIC_delta: Transcr 44.8 1.2E+02 0.0026 32.4 9.3 36 848-883 87-122 (173)
474 PF07995 GSDH: Glucose / Sorbo 44.2 3E+02 0.0064 32.7 13.5 53 77-146 3-60 (331)
475 smart00299 CLH Clathrin heavy 44.0 2.4E+02 0.0052 28.4 11.2 35 1183-1217 75-109 (140)
476 PF10168 Nup88: Nuclear pore c 44.0 1.1E+02 0.0023 40.4 10.2 90 17-120 77-180 (717)
477 KOG1585 Protein required for f 43.7 55 0.0012 36.7 6.4 31 1186-1216 67-97 (308)
478 PF08728 CRT10: CRT10; InterP 43.4 2.6E+02 0.0057 36.5 13.3 111 764-882 113-246 (717)
479 PLN00033 photosystem II stabil 42.8 7.1E+02 0.015 30.4 17.7 63 757-827 329-396 (398)
480 PF12768 Rax2: Cortical protei 41.2 6.3E+02 0.014 29.3 15.5 93 44-166 16-122 (281)
481 KOG0985 Vesicle coat protein c 40.9 5.2E+02 0.011 34.9 14.9 120 1167-1286 1197-1341(1666)
482 PRK15363 pathogenicity island 40.7 3.2E+02 0.0069 28.9 11.2 85 1112-1201 36-127 (157)
483 PF14269 Arylsulfotran_2: Aryl 40.3 3.5E+02 0.0076 31.7 12.9 39 27-65 146-186 (299)
484 PF10214 Rrn6: RNA polymerase 39.2 1.1E+03 0.024 31.5 23.9 171 74-285 78-278 (765)
485 PRK09782 bacteriophage N4 rece 39.1 9.4E+02 0.02 33.2 18.3 39 1108-1146 75-116 (987)
486 TIGR00990 3a0801s09 mitochondr 39.1 3.1E+02 0.0067 35.5 13.6 17 1116-1132 404-420 (615)
487 COG4008 Predicted metal-bindin 39.0 64 0.0014 32.0 5.3 72 1181-1263 66-151 (153)
488 PF10214 Rrn6: RNA polymerase 38.9 1.1E+03 0.024 31.5 23.8 154 136-308 81-257 (765)
489 PF04840 Vps16_C: Vps16, C-ter 38.6 2.2E+02 0.0047 33.7 10.9 97 1118-1217 184-289 (319)
490 smart00564 PQQ beta-propeller 38.3 59 0.0013 23.9 4.1 25 151-175 8-32 (33)
491 PF12688 TPR_5: Tetratrico pep 38.2 2.8E+02 0.006 27.8 10.1 18 1115-1132 5-22 (120)
492 PF07995 GSDH: Glucose / Sorbo 37.8 4.9E+02 0.011 30.8 14.0 112 503-634 3-134 (331)
493 PF07676 PD40: WD40-like Beta 37.6 72 0.0016 24.6 4.7 19 256-274 11-29 (39)
494 PF13429 TPR_15: Tetratricopep 36.7 37 0.0008 38.9 4.2 142 1111-1262 9-171 (280)
495 PRK13684 Ycf48-like protein; P 36.6 7.9E+02 0.017 29.1 16.6 105 502-637 173-282 (334)
496 PRK10370 formate-dependent nit 35.9 3.5E+02 0.0075 29.5 11.4 42 1106-1147 68-112 (198)
497 KOG1585 Protein required for f 35.7 2E+02 0.0044 32.4 9.1 90 1165-1261 72-174 (308)
498 TIGR03606 non_repeat_PQQ dehyd 35.5 6.8E+02 0.015 31.2 14.8 54 78-146 32-90 (454)
499 TIGR00990 3a0801s09 mitochondr 35.5 5.1E+02 0.011 33.4 14.8 30 1115-1144 369-401 (615)
500 PF13428 TPR_14: Tetratricopep 35.0 51 0.0011 26.3 3.5 29 1115-1143 5-36 (44)
No 1
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=9e-138 Score=1196.97 Aligned_cols=1030 Identities=44% Similarity=0.646 Sum_probs=847.7
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCC
Q 000707 8 PADSWDCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1341)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1341)
+.+.|+| |||||+|+.|.+++||+|+||||||+++.|.|+|.++.|.+++++.|+. .|+.|+|+|..
T Consensus 1 ~~~~s~~--tlpG~l~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~h~s-----------~V~~VrWap~~ 67 (1062)
T KOG1912|consen 1 NFKVSDH--TLPGPLSRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIELHQS-----------AVTSVRWAPAP 67 (1062)
T ss_pred CCccccc--cCCCCCCcccccccccCccceEEEecCceEEEEehhhhhhhhccccCcc-----------ceeEEEeccCC
Confidence 3578999 9999999999999999999999999999999999999999999999997 99999999999
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCc-cEEEEEeCCCeEEEEEC
Q 000707 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAINGPSVLSLYNT 166 (1341)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~s~d~~i~lWd~ 166 (1341)
++++++| |.....+|||++..|+|+|||+..+..+.++ ..|.+ +|+++||.|..+++ ++|++.++.++|.+||+
T Consensus 68 ~p~~llS--~~~~~lliAsaD~~GrIil~d~~~~s~~~~l--~~~~~-~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt 142 (1062)
T KOG1912|consen 68 SPRDLLS--PSSSQLLIASADISGRIILVDFVLASVINWL--SHSND-SVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT 142 (1062)
T ss_pred CchhccC--ccccceeEEeccccCcEEEEEehhhhhhhhh--cCCCc-chhheeeeeccCcchheeEEecCCcEEEEEEc
Confidence 9999998 3357889999999999999999999999996 44556 99999999999888 89999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc-cccCCC
Q 000707 167 TSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS-AGAASL 245 (1341)
Q Consensus 167 ~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~-~~s~~~ 245 (1341)
.||+++|++++.++.+.|++|+|||++++++.+.+|++++.++.+..+.+..+|+++|.++..++.++++.-. +.+...
T Consensus 143 dtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts 222 (1062)
T KOG1912|consen 143 DTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTS 222 (1062)
T ss_pred cCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccC
Confidence 9999999999999999999999999999999999999999999998888888999999988777877776421 122222
Q ss_pred CCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEe
Q 000707 246 SPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1341)
Q Consensus 246 ~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1341)
.|++..++.+|.+++|+|.+|++++..+++++.|+|++..+++.+++++|++.+|++|+++|+++.|||+|.||.+.+|.
T Consensus 223 ~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 223 TPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC----------------CceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCC
Q 000707 326 RKE----------------GEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSP 389 (1341)
Q Consensus 326 ~~~----------------g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~ 389 (1341)
+++ |+|++.+|.+++.||.
T Consensus 303 rk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~--------------------------------------------- 337 (1062)
T KOG1912|consen 303 RKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPV--------------------------------------------- 337 (1062)
T ss_pred eeccCccccccchhhccccccceEEEeechhcccc---------------------------------------------
Confidence 986 5566666666665553
Q ss_pred CccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCccccccccccccccc
Q 000707 390 FEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEH 469 (1341)
Q Consensus 390 ~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~ 469 (1341)
.+.+||.+++ .++..-++|++.+|++.+++... +...+..+.+.++.|++.+.. ..
T Consensus 338 -~~~~cPs~~s--a~avl~s~g~~~~w~l~~~ri~~----~~~s~~iel~~pf~f~~~~~~-v~---------------- 393 (1062)
T KOG1912|consen 338 -IGASCPSTPS--ALAVLYSSGDSTFWQLSNGRIHL----DYRSSSIELVLPFDFNLSTKL-VG---------------- 393 (1062)
T ss_pred -eeecCCCChh--hhhhhhhcchhHHHhhhcCCcCc----ccccccccccccccccCceee-hh----------------
Confidence 3444555444 77888899999999999876533 345677888999999887521 00
Q ss_pred ccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCccc--ccccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000707 470 VNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTA--TLARGGNYPAVAVPLVALGTQSGAVDVVDVS 547 (1341)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~--~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~ 547 (1341)
..++.......+|+++.++..+.|..-.+ .+.-|+|+++...+++|.|++.|+|.|+|+.
T Consensus 394 ------------------k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvs 455 (1062)
T KOG1912|consen 394 ------------------KTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVS 455 (1062)
T ss_pred ------------------hccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEec
Confidence 00111111233688888888876521111 1223889999999999999999999999999
Q ss_pred CCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCE
Q 000707 548 ANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRY 627 (1341)
Q Consensus 548 tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~ 627 (1341)
++.+.+.|..|++.|++++|.+..+++|++++.++.++|+++|+++|.|++||..+.||.++++++.||++|++|..|+|
T Consensus 456 t~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~y 535 (1062)
T KOG1912|consen 456 TNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRY 535 (1062)
T ss_pred chhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCce
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEeccCCCceeeecc--Cc-eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCC
Q 000707 628 LLILFRDAPVEVWAMTKNPIMLRSLA--LP-FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDS 704 (1341)
Q Consensus 628 Las~s~D~~I~vWDl~~t~~~l~~l~--~~-v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~ 704 (1341)
|++.++|.++++||+ ++..+++.+. .| |+.++|+.+..+...+...+|| +++.
T Consensus 536 Lai~Fr~~plEiwd~-kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q---~sms-------------------- 591 (1062)
T KOG1912|consen 536 LAILFRREPLEIWDL-KTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ---SSMS-------------------- 591 (1062)
T ss_pred EEEEecccchHHHhh-ccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh---hhhh--------------------
Confidence 999999999999999 8888887665 46 8999999544443322111121 1111
Q ss_pred cCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeeccc---CCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEE
Q 000707 705 KDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFR---PKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWD 781 (1341)
Q Consensus 705 ~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~---~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWD 781 (1341)
.+..+..+.|..++....++....|.. ..+. +| ...+..|||++++||.|+.+|++++||
T Consensus 592 ------------~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~e--sf---afal~~mAwk~d~lv~GD~~GNl~~WD 654 (1062)
T KOG1912|consen 592 ------------ENLVVLDSVESRIYHITLSALVVSDGSQVNTAWE--SF---AFALCAMAWKDDILVVGDVEGNLVVWD 654 (1062)
T ss_pred ------------hceeeeccccchheehhhhhhhhccccchhhHHH--HH---HHHHHhhhccCCeeEeecccCceeEEe
Confidence 111222222333332222222111110 0010 01 123556999999999999999999999
Q ss_pred CCCCceee---eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCC
Q 000707 782 VTTGHSSQ---FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTR 858 (1341)
Q Consensus 782 l~tg~~~~---l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~ 858 (1341)
+..++.+. .+.|+.++..+.+-|+. +.+++...|+ +.+||.+.-.
T Consensus 655 lg~R~SRg~~d~p~~ra~~l~~~~ipG~------~~~lvl~~d~-~~lwdtk~~~------------------------- 702 (1062)
T KOG1912|consen 655 LGRRQSRGVRDSPDPRAHSLTFPQIPGD------HTTLVLELDW-LPLWDTKADT------------------------- 702 (1062)
T ss_pred cccccccCccCCCCchhhheecccCCCC------ceEEEEecCc-ceecccccce-------------------------
Confidence 98776665 67788888888777773 4577777777 7788754321
Q ss_pred CCCCCCeEEEEEECCCcEEEEEccCCceec-ccccccchhcccCCCCcccccccccchHHHHHHHHHhCCCCCccccccC
Q 000707 859 TDKNDPLVLCIAGADSSFRLIEVNTEKKIG-YTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCST 937 (1341)
Q Consensus 859 ~~~g~~~~Las~s~DgtIrvWdv~~~~~~~-~~~~~~~~~~~~~~~pv~~~~~l~~~~~~~lr~~l~~~~~~~~~~~~~~ 937 (1341)
+++..++.|++.|+.|+...++.. .+++ ..+++|+++|.++|.|+|..|++ ++|+|| +++
T Consensus 703 ------lV~siag~dssfrlldvdlc~~~~~~l~~--d~~~Rf~~m~mks~~ll~~e~~l---------vkPsWf--sst 763 (1062)
T KOG1912|consen 703 ------LVLSIAGMDSSFRLLDVDLCEKSPLVLPN--DNKERFRVMPMKSPPLLPKEHAL---------VKPSWF--SST 763 (1062)
T ss_pred ------eeeeeccCCcceEEEEEEecccCceecCC--CCceeEEeccccCCccccCcccc---------cccccc--ccc
Confidence 133446677788888776544422 1111 33778888999999999999977 889999 666
Q ss_pred CcccCCCCCCCCCCChhhhhhhhccCCCCCCccchHHHHhhcccccccccccchHHHHHHHhhhcchhhHHHHHHHHHcC
Q 000707 938 TIKKRPHLIPGTPSSQKDLRSYMIGLPPIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAARFAFAAAVFG 1017 (1341)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~a~~fg 1017 (1341)
-+..+++.++++.++..++|+|++++||.++..++|+.++.+|+||. ++|++++++|.+.++ .++||+||+++||
T Consensus 764 l~~k~s~~i~~~~l~~~~~r~ysid~s~~d~pe~~em~~~i~e~~~s---l~~Dek~~ll~~~~~--~lqR~~~var~~G 838 (1062)
T KOG1912|consen 764 LYKKRSHNIVGKHLSSKDLRSYSIDRSPADDPEVSEMELKILEPYRS---LLDDEKAKLLEADVS--KLQRFAFVARFFG 838 (1062)
T ss_pred eeccccccchhhhccCCccccccccCCCCCCcccHHHHHHHHHHHhh---hCcHHHHHHhHHHHH--HHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999999999999998 689999999999875 8999999999999
Q ss_pred CchHHHHHHhhHHHHHHHHHhcc-CCCCCCCCCCCCchhhhhhhhhhccCCCCCCCCCcCCCcccchhhhcccchHHHHH
Q 000707 1018 ETSEALFWLQLPRALNHLMRKLK-RSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWE 1096 (1341)
Q Consensus 1018 ~~~~~~fw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1096 (1341)
|.+|+.||++ +++|++++.. +++++.. ++. +++.++|.+.|.+ .+++. +|+.++++
T Consensus 839 d~sea~fw~~---ai~h~~hslt~~~a~~~e--A~~--------~~~p~~~lsspe~--------r~idv-mc~~~~~~- 895 (1062)
T KOG1912|consen 839 DTSEALFWLI---AIDHFAHSLTEHSAPKLE--AQK--------SKWPSGGLSSPES--------RKIDV-MCAAEQAM- 895 (1062)
T ss_pred cchHHHHHHH---HHHHHHHHhhhhcccccc--cch--------hcCcCCCCCCcch--------hhhhh-HhhHHHHH-
Confidence 9999999996 8888888888 6665542 222 2344555555543 44555 66655441
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH
Q 000707 1097 TAAERITWHEKLEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR 1176 (1341)
Q Consensus 1097 ~~~er~~~~e~~~~~e~~~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~ 1176 (1341)
.+||+++++.+|+.++||++||++.||+++ +++|||+|++++|.++.|+++|+||+|||+
T Consensus 896 -----------------~~k~v~qlv~vG~~~~aV~llL~~saD~~y---~slkA~ll~s~~s~~~~~s~iKlvAtNmia 955 (1062)
T KOG1912|consen 896 -----------------ERKLVEQLVVVGSAKEAVTLLLIVSADLRY---ASLKAALLVSCQSNEKAKSLIKLVATNMIA 955 (1062)
T ss_pred -----------------HHHHHHHHhhhccHHHHhhhhhhhccCCch---HHHHhhheeeeccCchHHHHHHHHHHhhhc
Confidence 148999999999999999999999999866 999999999999999999999999999999
Q ss_pred ccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccH-HHHHHHHHHhCCHHH
Q 000707 1177 NDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNI-WRALILYVAAGGLQE 1255 (1341)
Q Consensus 1177 ~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~-~~A~~~~~~~g~~~~ 1255 (1341)
.|++++||++||++|+..|||+|||++|+|.+|++|||++|+++| ++..||..||+...+++ -.|.+..++.+|+++
T Consensus 956 ~d~~~~Gv~LLclvg~~~dAC~yLQ~~g~Wt~aa~lAk~~L~~~~--~v~srwi~hl~~~~~~~~~~a~ls~~s~~c~~~ 1033 (1062)
T KOG1912|consen 956 SDLIEDGVELLCLVGAGGDACKYLQSQGLWTKAAVLAKMGLDDPT--EVESRWIGHLADEAKQIRVLAELSRRSWPCVVE 1033 (1062)
T ss_pred ccccccceeEEEEeccchHHHHHHHhccchhHHHHHHHhcCCChH--HHHHHHHHHhhhHHHhHHHHHHHHHhcccchhh
Confidence 999999999999999999999999999999999999999997776 99999999999999988 688888889999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhhhhcc
Q 000707 1256 ALAALREAQHPDTAAMFVLACREIYAEIITN 1286 (1341)
Q Consensus 1256 a~~~l~~~~~~~~aa~~~~~~~e~~~~~~~~ 1286 (1341)
|++ ++++++|++|||++||.+++.+.+++
T Consensus 1034 ~a~--~~~~~~dr~alfv~ac~~~~s~~~Te 1062 (1062)
T KOG1912|consen 1034 AAS--SADAILDRLALFVTACTPPLSSCPTE 1062 (1062)
T ss_pred hhh--hhhhhhhHHHHHhhhccCccccCCCC
Confidence 999 99999999999999999999988763
No 2
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.5e-48 Score=437.20 Aligned_cols=569 Identities=15% Similarity=0.195 Sum_probs=429.6
Q ss_pred eEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEe
Q 000707 30 ADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD 108 (1341)
Q Consensus 30 ~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~ 108 (1341)
+--.|.| .|+|+++++|.+.+..++.....+.+|.. .||..+|||. |.++|||+
T Consensus 24 ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~-----------~vtVAkySPs--------------G~yiASGD 78 (603)
T KOG0318|consen 24 IGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAH-----------QVTVAKYSPS--------------GFYIASGD 78 (603)
T ss_pred eccCCCCCeEEEeCCCEEEEEECCCccceeeeccccc-----------eeEEEEeCCC--------------ceEEeecC
Confidence 4455677 89999999999999999999999999986 9999999986 57899999
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCC---CeEEEEECCCCeEEEEEeCCCCceEEE
Q 000707 109 RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP---SVLSLYNTTSASCMWKYDASPEYLSCI 185 (1341)
Q Consensus 109 ~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d---~~i~lWd~~tg~~i~~~~~~~~~v~~~ 185 (1341)
..|+|||||....+.+..-+++.-.+ +|.+|+|+.++. ++.|++-+. +.+.+|| +|+.+..+++|...++++
T Consensus 79 ~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~Wd~ds~--RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~ 153 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISWDFDSK--RIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSV 153 (603)
T ss_pred CcCcEEEEeccCcceeeeeeeeeccc-ccccceeCCCCc--EEEEEecCccceeEEEEec--CCCccceeeccceeEeee
Confidence 99999999986645444333455567 999999999872 455555332 4677888 477888899999999999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 186 ~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
.|-|..+-|+++++.|+.|.+++- | ..+|..+ ...|...|.++.|||||
T Consensus 154 ~~KpsRPfRi~T~sdDn~v~ffeG----P----PFKFk~s-----------------------~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 154 DFKPSRPFRIATGSDDNTVAFFEG----P----PFKFKSS-----------------------FREHSKFVNCVRYSPDG 202 (603)
T ss_pred eccCCCceEEEeccCCCeEEEeeC----C----Ceeeeec-----------------------ccccccceeeEEECCCC
Confidence 999999999999999999999752 1 2334211 01233468888999999
Q ss_pred CceEEEEcCCeEEEEEcCCCceeEEEec-CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccc
Q 000707 266 RHIIFVTFPRELVVFDLQYETPLFSAAL-PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPS 344 (1341)
Q Consensus 266 ~~l~~~~~d~~I~iwDl~t~~~l~~~~l-~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~ 344 (1341)
...++++.|++|.|||.++|+.++.+.- +.+.+.+..+.++||+..+++++.|.+++|||+.+.+.+.++. +..
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~-~~~---- 277 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP-MGS---- 277 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee-cCC----
Confidence 9999999999999999999999988862 3456778899999999999999999999999999888776661 111
Q ss_pred cCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccc
Q 000707 345 IGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAG 424 (1341)
Q Consensus 345 ~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~ 424 (1341)
+ +. ...--.+++ +.+|+++|.+|+|.+.+......+
T Consensus 278 --~-v~--dqqvG~lWq---------------------------------------kd~lItVSl~G~in~ln~~d~~~~ 313 (603)
T KOG0318|consen 278 --T-VE--DQQVGCLWQ---------------------------------------KDHLITVSLSGTINYLNPSDPSVL 313 (603)
T ss_pred --c-hh--ceEEEEEEe---------------------------------------CCeEEEEEcCcEEEEecccCCChh
Confidence 0 00 000011111 458999999999998876543210
Q ss_pred cccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcce
Q 000707 425 DLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTV 504 (1341)
Q Consensus 425 ~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~v 504 (1341)
-.+.||...|
T Consensus 314 ----------------------------------------------------------------------~~i~GHnK~I 323 (603)
T KOG0318|consen 314 ----------------------------------------------------------------------KVISGHNKSI 323 (603)
T ss_pred ----------------------------------------------------------------------heecccccce
Confidence 0245789999
Q ss_pred EEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEE-eecCCCeEEEEEcCCCcEEEEecCCccc
Q 000707 505 TMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYSQVNE 583 (1341)
Q Consensus 505 t~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l-~~H~~~V~~l~fs~d~~llS~s~d~~~~ 583 (1341)
|+|.++| +++.|.+|+.||.|.-||..+|..-+.. .+|+..|.+++-+..+.+++.+.|
T Consensus 324 TaLtv~~----------------d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~D---- 383 (603)
T KOG0318|consen 324 TALTVSP----------------DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWD---- 383 (603)
T ss_pred eEEEEcC----------------CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecC----
Confidence 9999998 5799999999999999999998765544 789999999998887888887765
Q ss_pred ccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcC
Q 000707 584 KSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTL 663 (1341)
Q Consensus 584 ~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp 663 (1341)
+++++.++..+....-...+- ..+| .+++.+++|.+++.+..+.-+-+=|. +....+ .+.-...+++.+|
T Consensus 384 ------d~l~~~~~~~~~~t~~~~~~l-g~QP-~~lav~~d~~~avv~~~~~iv~l~~~-~~~~~~-~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 384 ------DTLRVISLKDNGYTKSEVVKL-GSQP-KGLAVLSDGGTAVVACISDIVLLQDQ-TKVSSI-PIGYESSAVAVSP 453 (603)
T ss_pred ------CeEEEEecccCcccccceeec-CCCc-eeEEEcCCCCEEEEEecCcEEEEecC-Ccceee-ccccccceEEEcC
Confidence 489998885432100000111 1234 48999999887777665554444334 111111 1111224455554
Q ss_pred CCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeeccc
Q 000707 664 PTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFR 743 (1341)
Q Consensus 664 ~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~ 743 (1341)
+ +..+|+++.||.|++|.+.|..+.+.
T Consensus 454 ~----------------------------------------------------~~~vaVGG~Dgkvhvysl~g~~l~ee- 480 (603)
T KOG0318|consen 454 D----------------------------------------------------GSEVAVGGQDGKVHVYSLSGDELKEE- 480 (603)
T ss_pred C----------------------------------------------------CCEEEEecccceEEEEEecCCcccce-
Confidence 3 45678999999999999987554321
Q ss_pred CCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee--eeccCCCcEEEEEEccCCCCCCCCCEEEEEE
Q 000707 744 PKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS--QFSTHREGIRRIKFSPVVPGDRSRGRIAVLF 819 (1341)
Q Consensus 744 ~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~--~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s 819 (1341)
..+..|.+.|+++++ |+.+||+|+..+.+.+||+.+++.+ .+.-|+++|.+|+|||+ + .++|+++
T Consensus 481 -----~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~--n----~~vATGS 549 (603)
T KOG0318|consen 481 -----AKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPN--N----KLVATGS 549 (603)
T ss_pred -----eeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCC--c----eEEEecc
Confidence 112357788999999 9999999999999999999998853 35669999999999999 4 7899999
Q ss_pred CCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 820 HDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 820 ~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
-|..|.||+++.+... ....-.|.. .|..+.|..+ . .|+|+|.|..||+|.+.
T Consensus 550 lDt~Viiysv~kP~~~-i~iknAH~~--gVn~v~wlde-----~--tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 550 LDTNVIIYSVKKPAKH-IIIKNAHLG--GVNSVAWLDE-----S--TVVSSGQDANIKVWNVT 602 (603)
T ss_pred ccceEEEEEccChhhh-eEecccccc--CceeEEEecC-----c--eEEeccCcceeEEeccc
Confidence 9999999999988744 233345653 3999999965 4 57899999999999875
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-46 Score=439.52 Aligned_cols=573 Identities=14% Similarity=0.167 Sum_probs=434.9
Q ss_pred CceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 28 GSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 28 ~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
+.++||++| .|++.+++.|.+.|..+++.....-.... ...+|+++.+|| +.+|.+
T Consensus 23 G~~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed---------~d~ita~~l~~d--------------~~~L~~ 79 (775)
T KOG0319|consen 23 GPVAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNED---------EDEITALALTPD--------------EEVLVT 79 (775)
T ss_pred CceeECCCCCEEEEecCceEEEEEccCCceecccCCccc---------hhhhheeeecCC--------------ccEEEE
Confidence 459999999 88888999999999999988421111111 137999998876 578999
Q ss_pred EeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEE
Q 000707 107 ADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIR 186 (1341)
Q Consensus 107 g~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~ 186 (1341)
+++.+.+++|++.+|++++.+. -.|++ ||--++|.|.+ .+||+++.|+.+++||...+.+++.+.+|++.|.++.
T Consensus 80 a~rs~llrv~~L~tgk~irswK-a~He~-Pvi~ma~~~~g---~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~ 154 (775)
T KOG0319|consen 80 ASRSQLLRVWSLPTGKLIRSWK-AIHEA-PVITMAFDPTG---TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLL 154 (775)
T ss_pred eeccceEEEEEcccchHhHhHh-hccCC-CeEEEEEcCCC---ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEE
Confidence 9999999999999998887752 23778 99999999987 8999999999999999999999999999999999999
Q ss_pred EcCCCC-CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 187 RNPFDA-RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 187 fsP~d~-~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
|.|.-. ..|+++..|+.+++||.... .+.+..+..| .+.+.+++|++|+
T Consensus 155 F~~~~~~~lL~sg~~D~~v~vwnl~~~---------------~tcl~~~~~H---------------~S~vtsL~~~~d~ 204 (775)
T KOG0319|consen 155 FHPHWNRWLLASGATDGTVRVWNLNDK---------------RTCLHTMILH---------------KSAVTSLAFSEDS 204 (775)
T ss_pred eCCccchhheeecCCCceEEEEEcccC---------------chHHHHHHhh---------------hhheeeeeeccCC
Confidence 999422 24688889999999987432 1123333333 3358899999999
Q ss_pred CceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCC-----CCEEEEEecCCcEEEEeccCCceeeeeecccc
Q 000707 266 RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN-----NDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEE 340 (1341)
Q Consensus 266 ~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd-----g~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1341)
..+++++.|+.|.|||+...+.+.++++. ..+-++..-++ |.++++++++|.+++|+.+++.++.....
T Consensus 205 ~~~ls~~RDkvi~vwd~~~~~~l~~lp~y---e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~--- 278 (775)
T KOG0319|consen 205 LELLSVGRDKVIIVWDLVQYKKLKTLPLY---ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQ--- 278 (775)
T ss_pred ceEEEeccCcEEEEeehhhhhhhheechh---hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhcc---
Confidence 99999999999999999988888888764 23455555555 66999999999999999998775433210
Q ss_pred cccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccc
Q 000707 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1341)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~ 420 (1341)
| +++++...+.+ +....++.+..|.++.++|..+
T Consensus 279 --~------~~~e~~~~~~~--------------------------------------~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 279 --S------DSEEIDHLLAI--------------------------------------ESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred --C------Cchhhhcceec--------------------------------------cccCceEEEEccceEEEEEccc
Confidence 0 01111111111 1134778888999999998765
Q ss_pred cccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeecccc
Q 000707 421 EGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQIL 500 (1341)
Q Consensus 421 ~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~ 500 (1341)
....+ ++-|.
T Consensus 313 l~i~k----------------------------------------------------------------------~ivG~ 322 (775)
T KOG0319|consen 313 LTIVK----------------------------------------------------------------------QIVGY 322 (775)
T ss_pred cEEeh----------------------------------------------------------------------hhcCC
Confidence 54321 11223
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC-cEEEEecC
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVSFSYS 579 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~-~llS~s~d 579 (1341)
...|+.++|-.| ....||++++.+.+|+|++.+-.+. .+.||+..|.++.....| -++++|
T Consensus 323 ndEI~Dm~~lG~---------------e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~s-- 384 (775)
T KOG0319|consen 323 NDEILDMKFLGP---------------EESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGS-- 384 (775)
T ss_pred chhheeeeecCC---------------ccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEec--
Confidence 456666665432 5679999999999999999877765 789999999999954555 444444
Q ss_pred CcccccCcccCeEEEEEccCCcee--eeEEeccCCCCCeEEEEECCCC-CEEEEEECCCcEEEEeccCCCc-----ee--
Q 000707 580 QVNEKSGGYINRLVVTCLRSGINR--AFRVLQKPERAPIRALRASSSG-RYLLILFRDAPVEVWAMTKNPI-----ML-- 649 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~--~l~~l~~~~~~~I~~i~~SpdG-~~Las~s~D~~I~vWDl~~t~~-----~l-- 649 (1341)
.|+++++|-++.+..+ ++....+ |...|.+|+++..| .+|+++|.|+++++|++.++.. .+
T Consensus 385 --------KD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 385 --------KDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred --------CCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 4569999988554322 2332234 88999999998654 6899999999999999932100 00
Q ss_pred ----eeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEec
Q 000707 650 ----RSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALA 725 (1341)
Q Consensus 650 ----~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~ 725 (1341)
+...+.+++++.+ +....+|+++.
T Consensus 456 ~~t~~aHdKdIN~Vaia----------------------------------------------------~ndkLiAT~Sq 483 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIA----------------------------------------------------PNDKLIATGSQ 483 (775)
T ss_pred hHHHHhhcccccceEec----------------------------------------------------CCCceEEeccc
Confidence 0001122333322 23467899999
Q ss_pred CCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEE
Q 000707 726 NGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKF 802 (1341)
Q Consensus 726 Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~f 802 (1341)
|.+.++|+++..++. +.|.||...|.|+.| ..+.|+++|.|+|||+|.+.+.. +.+|.||+..|.++.|
T Consensus 484 DktaKiW~le~~~l~--------~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 484 DKTAKIWDLEQLRLL--------GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ccceeeecccCceEE--------EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 999999999865543 235689999999999 55789999999999999999988 6789999999999999
Q ss_pred ccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 803 SP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
-.+ | ..|++++.||-|+||++++.+|+ .++ .+|. .+|+++.-++. ++ .+++|+.||.|.+|.=.
T Consensus 556 ~~~--~----~qliS~~adGliKlWnikt~eC~-~tl-D~H~--DrvWaL~~~~~----~~--~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 556 IRN--G----KQLISAGADGLIKLWNIKTNECE-MTL-DAHN--DRVWALSVSPL----LD--MFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeC--C----cEEEeccCCCcEEEEeccchhhh-hhh-hhcc--ceeEEEeecCc----cc--eeEecCCCeEEEEeecC
Confidence 987 5 78999999999999999999955 566 6786 78999999987 44 57899999999999744
Q ss_pred C
Q 000707 883 T 883 (1341)
Q Consensus 883 ~ 883 (1341)
+
T Consensus 620 T 620 (775)
T KOG0319|consen 620 T 620 (775)
T ss_pred c
Confidence 4
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-43 Score=411.20 Aligned_cols=530 Identities=14% Similarity=0.148 Sum_probs=411.0
Q ss_pred CCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecC-CCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 26 NFGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPI-PPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~-~~V~v~d~~~~~~~~~l~~-H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
-+.+++.+||+ .|.++.. ..+++|+..+++++..++. |++ +|-.++|.|. |.
T Consensus 64 ~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~-----------Pvi~ma~~~~--------------g~ 118 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEA-----------PVITMAFDPT--------------GT 118 (775)
T ss_pred hhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCC-----------CeEEEEEcCC--------------Cc
Confidence 36799999998 6666655 5789999999999999998 998 8999999975 47
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE-EEEEeCCCCc
Q 000707 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYDASPEY 181 (1341)
Q Consensus 103 ~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~~~~~~ 181 (1341)
+||+|+.||+|+|||+..+.+++.| .||.+ .|..+.|.|+... .+|+++..|+++++||..+++. +.++..|...
T Consensus 119 LlAtggaD~~v~VWdi~~~~~th~f--kG~gG-vVssl~F~~~~~~-~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~ 194 (775)
T KOG0319|consen 119 LLATGGADGRVKVWDIKNGYCTHSF--KGHGG-VVSSLLFHPHWNR-WLLASGATDGTVRVWNLNDKRTCLHTMILHKSA 194 (775)
T ss_pred eEEeccccceEEEEEeeCCEEEEEe--cCCCc-eEEEEEeCCccch-hheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence 8999999999999999999999995 78888 9999999998643 7899999999999999986654 6777888889
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000707 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~af 261 (1341)
|++++|.+ |+..+.++|.|..+.+||+..... .+.. .+. -.+-++.|
T Consensus 195 vtsL~~~~-d~~~~ls~~RDkvi~vwd~~~~~~----l~~l----------p~y------------------e~~E~vv~ 241 (775)
T KOG0319|consen 195 VTSLAFSE-DSLELLSVGRDKVIIVWDLVQYKK----LKTL----------PLY------------------ESLESVVR 241 (775)
T ss_pred eeeeeecc-CCceEEEeccCcEEEEeehhhhhh----hhee----------chh------------------hheeeEEE
Confidence 99999999 899999999999999999722100 0000 000 01345567
Q ss_pred ccC-----CCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeee
Q 000707 262 SPH-----WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 262 Spd-----g~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
-++ |.++++++.++.+++||.++++++.....+. ...+..++.++....+++...|..+.+.|.++......+.
T Consensus 242 l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~iv 320 (775)
T KOG0319|consen 242 LREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIV 320 (775)
T ss_pred echhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhhc
Confidence 666 6699999999999999999998865443221 1236677888877788889999999999887765443332
Q ss_pred cccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEE
Q 000707 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1341)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lW 416 (1341)
|.++ +|..+-|. .+..++||.++..+.+|++
T Consensus 321 G~nd------------EI~Dm~~l-------------------------------------G~e~~~laVATNs~~lr~y 351 (775)
T KOG0319|consen 321 GYND------------EILDMKFL-------------------------------------GPEESHLAVATNSPELRLY 351 (775)
T ss_pred CCch------------hheeeeec-------------------------------------CCccceEEEEeCCCceEEE
Confidence 2211 22222222 1224699999999999999
Q ss_pred EccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeee
Q 000707 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1341)
Q Consensus 417 dl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1341)
++++..+ ..
T Consensus 352 ~~~~~~c-----------------------------------------------------------------------~i 360 (775)
T KOG0319|consen 352 TLPTSYC-----------------------------------------------------------------------QI 360 (775)
T ss_pred ecCCCce-----------------------------------------------------------------------EE
Confidence 6654211 02
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc----EEEEEeecCCCeEEEEEcCCC-
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA----VTASFSVHNGTVRGLRWLGNS- 571 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~----~~~~l~~H~~~V~~l~fs~d~- 571 (1341)
+.||...|.++++.. .|-+||+|+.|.+|++|.+..+. ++....+|++.|.+|+++..+
T Consensus 361 i~GH~e~vlSL~~~~----------------~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~a 424 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWS----------------SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGA 424 (775)
T ss_pred EeCchhheeeeeecc----------------cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCc
Confidence 346888888887433 36799999999999999885443 456778999999999997655
Q ss_pred -cEEEEecCCcccccCcccCeEEEEEccCCce----eee--EEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccC
Q 000707 572 -RLVSFSYSQVNEKSGGYINRLVVTCLRSGIN----RAF--RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTK 644 (1341)
Q Consensus 572 -~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~----~~l--~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~ 644 (1341)
-++++|. |.++++|++...+. ..+ +...-.|...|++++++|..+++|+||.|++.+||++ .
T Consensus 425 sffvsvS~----------D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~l-e 493 (775)
T KOG0319|consen 425 SFFVSVSQ----------DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDL-E 493 (775)
T ss_pred cEEEEecC----------CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecc-c
Confidence 4555554 45999999965221 111 1112237889999999999999999999999999999 6
Q ss_pred CCceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEE
Q 000707 645 NPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1341)
Q Consensus 645 t~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la 721 (1341)
+..++.++.+ .+.++.|+|- .+.+|
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~----------------------------------------------------dq~la 521 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKN----------------------------------------------------DQLLA 521 (775)
T ss_pred CceEEEEeeCCccceEEEEeccc----------------------------------------------------cceeE
Confidence 8888888774 3566777642 25689
Q ss_pred EEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEE
Q 000707 722 FALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIR 798 (1341)
Q Consensus 722 ~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~ 798 (1341)
+++.|++|++|.++...+-. +|.||...|.-.+| +|..|+|++.||-||+|+++++. ..++.+|..+|+
T Consensus 522 T~SgD~TvKIW~is~fSClk--------T~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvW 593 (775)
T KOG0319|consen 522 TCSGDKTVKIWSISTFSCLK--------TFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVW 593 (775)
T ss_pred eccCCceEEEEEeccceeee--------eecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeE
Confidence 99999999999997655421 24589999999999 89999999999999999999998 578999999999
Q ss_pred EEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 799 RIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 799 ~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
+++-+|. . ..+++++.||.|.+|.=.+
T Consensus 594 aL~~~~~--~----~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 594 ALSVSPL--L----DMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEeecCc--c----ceeEecCCCeEEEEeecCc
Confidence 9999998 3 5789999999999995333
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3e-42 Score=376.76 Aligned_cols=338 Identities=20% Similarity=0.249 Sum_probs=268.5
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCC
Q 000707 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1341)
Q Consensus 250 ~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1341)
.+|...|+++.|||+|+.|++++.|.++++||+.|.+++.++. +|..-++.++.+|||+.||+|+.||+|++||.++|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK--GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec--CCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 3455568999999999999999999999999999999988775 55577888999999999999999999999999999
Q ss_pred ceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEc
Q 000707 330 EQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISD 409 (1341)
Q Consensus 330 ~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~ 409 (1341)
+++..- ..|+ .-.|++++.-|-. .++..+.||+.|.
T Consensus 190 ~~~g~~--------l~gH---~K~It~Lawep~h---------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 190 QQIGRA--------LRGH---KKWITALAWEPLH---------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred Cccccc--------ccCc---ccceeEEeecccc---------------------------------cCCCccceecccC
Confidence 865321 1121 0035555543321 1112458999999
Q ss_pred CCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccce
Q 000707 410 DGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSF 489 (1341)
Q Consensus 410 DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (1341)
||+|+|||+..+.+..
T Consensus 226 Dg~vrIWd~~~~~~~~---------------------------------------------------------------- 241 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVR---------------------------------------------------------------- 241 (480)
T ss_pred CCCEEEEEccCceEEE----------------------------------------------------------------
Confidence 9999999987553211
Q ss_pred eEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcC
Q 000707 490 KVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLG 569 (1341)
Q Consensus 490 k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~ 569 (1341)
.+.||+.+||||++-. ..++++|+.|++|++|+...|.+.++|.||...|+.|+.+-
T Consensus 242 ------~lsgHT~~VTCvrwGG-----------------~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsT 298 (480)
T KOG0271|consen 242 ------TLSGHTASVTCVRWGG-----------------EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALST 298 (480)
T ss_pred ------EeccCccceEEEEEcC-----------------CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccc
Confidence 2456999999999864 46999999999999999999999999999999999999875
Q ss_pred CCcEEEEecCCcc---------------------------cccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEEC
Q 000707 570 NSRLVSFSYSQVN---------------------------EKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRAS 622 (1341)
Q Consensus 570 d~~llS~s~d~~~---------------------------~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~S 622 (1341)
+-.+-+.+++.+. ..+|+.|.++.+|+....+ +++..+.| |..-|+.+.||
T Consensus 299 dy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtg-Hq~lVn~V~fS 376 (480)
T KOG0271|consen 299 DYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTG-HQALVNHVSFS 376 (480)
T ss_pred hhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhc-hhhheeeEEEC
Confidence 4433333333211 1245567899999974332 25554455 88899999999
Q ss_pred CCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCC
Q 000707 623 SSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSS 702 (1341)
Q Consensus 623 pdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~ 702 (1341)
|||+|+|++|.|+.||+||. ++|+.+.+
T Consensus 377 Pd~r~IASaSFDkSVkLW~g-~tGk~las--------------------------------------------------- 404 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDG-RTGKFLAS--------------------------------------------------- 404 (480)
T ss_pred CCccEEEEeecccceeeeeC-CCcchhhh---------------------------------------------------
Confidence 99999999999999999998 67643322
Q ss_pred CCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEE
Q 000707 703 DSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWW 780 (1341)
Q Consensus 703 ~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lW 780 (1341)
|.||.+.|..++| |.++|++||.|.|+++|
T Consensus 405 ------------------------------------------------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 405 ------------------------------------------------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred ------------------------------------------------hhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 2256667888888 78899999999999999
Q ss_pred ECCCCce-eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEE
Q 000707 781 DVTTGHS-SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1341)
Q Consensus 781 Dl~tg~~-~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWD 828 (1341)
|++++++ ..++||...|.+|.|+|| | +++++++.|+.+++|.
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspD--G----~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPD--G----QRVASGGKDKVLRLWR 479 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCC--C----ceeecCCCceEEEeec
Confidence 9999885 568999999999999999 6 8999999999999994
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-37 Score=364.35 Aligned_cols=534 Identities=18% Similarity=0.254 Sum_probs=401.6
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeec-CCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
.+.+.|++|| -+.+..+|.|.|+|.+..+-. ||+ .+.. .|+.++.||+ |.+|
T Consensus 17 ~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~-Tl~~e~~~-----------NI~~ialSp~--------------g~ll 70 (893)
T KOG0291|consen 17 AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSY-TLPLETRY-----------NITRIALSPD--------------GTLL 70 (893)
T ss_pred cCcEEECCCCCEEEeccCCEEEEEEccCCcce-eEEeecCC-----------ceEEEEeCCC--------------ceEE
Confidence 4678999999 688899999999999876543 333 3333 8999999986 5789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe--------EEEEEe
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS--------CMWKYD 176 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~--------~i~~~~ 176 (1341)
++.+..|.+.+-+.....+++.|.++ + +|.+++|||++ +++|++. .+.+.||....-. ...++.
T Consensus 71 lavdE~g~~~lvs~~~r~Vlh~f~fk---~-~v~~i~fSPng---~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~ 142 (893)
T KOG0291|consen 71 LAVDERGRALLVSLLSRSVLHRFNFK---R-GVGAIKFSPNG---KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYL 142 (893)
T ss_pred EEEcCCCcEEEEecccceeeEEEeec---C-ccceEEECCCC---cEEEEEe-cceeEEEecCcchhcccCcceEeeeec
Confidence 99999999999999888888887653 3 89999999998 7777665 5789999875222 124566
Q ss_pred CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000707 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1341)
Q Consensus 177 ~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1341)
+|-+.|.++.|+- |++.|++++.|...++|++.+. +.+... +..+|..+|
T Consensus 143 g~fddi~si~Ws~-DSr~l~~gsrD~s~rl~~v~~~-------k~~~~~----------------------~l~gHkd~V 192 (893)
T KOG0291|consen 143 GHFDDITSIDWSD-DSRLLVTGSRDLSARLFGVDGN-------KNLFTY----------------------ALNGHKDYV 192 (893)
T ss_pred CCccceeEEEecc-CCceEEeccccceEEEEEeccc-------cccceE----------------------eccCCCcce
Confidence 7778999999998 9999999999999999987541 111100 123456679
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcCCC-----------------------ce-----e----EEEecCCCccceEEEE
Q 000707 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYE-----------------------TP-----L----FSAALPRGCAKFLDVL 304 (1341)
Q Consensus 257 ~~~afSpdg~~l~~~~~d~~I~iwDl~t~-----------------------~~-----l----~~~~l~~~~~~~~~v~ 304 (1341)
+.+-|..+.-.+.+.+.||.+.+|-.... +. . ...-+....+.+....
T Consensus 193 vacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~ 272 (893)
T KOG0291|consen 193 VACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAA 272 (893)
T ss_pred EEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeee
Confidence 99999999999999999999999987611 11 0 0111111223444445
Q ss_pred EcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCcc
Q 000707 305 ADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANV 384 (1341)
Q Consensus 305 ~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~ 384 (1341)
+.+....|+++-..|-..|.....-+.+|.+. ++ ...|..+++.
T Consensus 273 fH~~t~~lvvgFssG~f~LyelP~f~lih~LS--------is----~~~I~t~~~N------------------------ 316 (893)
T KOG0291|consen 273 FHKGTNLLVVGFSSGEFGLYELPDFNLIHSLS--------IS----DQKILTVSFN------------------------ 316 (893)
T ss_pred ccCCceEEEEEecCCeeEEEecCCceEEEEee--------cc----cceeeEEEec------------------------
Confidence 55667789999999999888887766666541 11 0033333333
Q ss_pred ccCCCCccccccccccccEEEEEEcC-CeEEEEEccccccccccccccccCCCcccccccccCcccccCcCccccccccc
Q 000707 385 DIDSPFEFSDDTLLLSKTHLISISDD-GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEA 463 (1341)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~las~s~D-G~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~ 463 (1341)
..|.+||.++.- |-+.+|+..++.-.
T Consensus 317 --------------~tGDWiA~g~~klgQLlVweWqsEsYV--------------------------------------- 343 (893)
T KOG0291|consen 317 --------------STGDWIAFGCSKLGQLLVWEWQSESYV--------------------------------------- 343 (893)
T ss_pred --------------ccCCEEEEcCCccceEEEEEeecccee---------------------------------------
Confidence 226789988766 89999998765310
Q ss_pred ccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEE
Q 000707 464 GKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDV 543 (1341)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~l 543 (1341)
+ ..|||...+++++++| +|+++|+|++||.|+|
T Consensus 344 -----------------------------l--KQQgH~~~i~~l~YSp----------------Dgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 344 -----------------------------L--KQQGHSDRITSLAYSP----------------DGQLIATGAEDGKVKV 376 (893)
T ss_pred -----------------------------e--eccccccceeeEEECC----------------CCcEEEeccCCCcEEE
Confidence 0 1256889999999999 7999999999999999
Q ss_pred EeCCCCcEEEEEeecCCCeEEEEEcCCCcE-EEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEEC
Q 000707 544 VDVSANAVTASFSVHNGTVRGLRWLGNSRL-VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRAS 622 (1341)
Q Consensus 544 WDl~tg~~~~~l~~H~~~V~~l~fs~d~~l-lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~S 622 (1341)
||..+|-|..+|..|+..|+++.|+..++. +|.+- |++|+.||+...+ .+|++..|......++++.
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSL----------DGtVRAwDlkRYr--NfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSL----------DGTVRAWDLKRYR--NFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEecCCEEEEeec----------CCeEEeeeecccc--eeeeecCCCceeeeEEEEc
Confidence 999999999999999999999999988754 44443 4699999998877 7888888777777899999
Q ss_pred CCCCEEEEEECCC-cEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCC
Q 000707 623 SSGRYLLILFRDA-PVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASS 701 (1341)
Q Consensus 623 pdG~~Las~s~D~-~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~ 701 (1341)
|.|..+.+|+.|. .|.||++ ++|+++-.+
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~-qTGqllDiL------------------------------------------------- 474 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSV-QTGQLLDIL------------------------------------------------- 474 (893)
T ss_pred CCCCEEEeeccceEEEEEEEe-ecCeeeehh-------------------------------------------------
Confidence 9999988887775 4778887 666543221
Q ss_pred CCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEE
Q 000707 702 SDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRW 779 (1341)
Q Consensus 702 ~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~l 779 (1341)
.||.+.|.+++| +|+.||+||.|+|||+
T Consensus 475 --------------------------------------------------sGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 475 --------------------------------------------------SGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred --------------------------------------------------cCCCCcceeeEEccccCeEEeccccceEEE
Confidence 257777877666 8999999999999999
Q ss_pred EECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc-----ccccCC----------
Q 000707 780 WDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN-----SLLQPQ---------- 843 (1341)
Q Consensus 780 WDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~-----~l~~gh---------- 843 (1341)
||+-... ....-.+...|..++|+|+ | ..||++.-||.|.+||+....++.. .+..|.
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPd--G----~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPD--G----KELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCC--C----CeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9996542 2222337788999999999 6 7899999999999999976653310 111111
Q ss_pred -CCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 844 -FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 844 -~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
..+...+.+.+++| |. .|++||..+.|.+|++.++
T Consensus 579 sa~~K~Ftti~ySaD----G~--~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 579 SAKGKTFTTICYSAD----GK--CILAGGESNSICIYDVPEG 614 (893)
T ss_pred cccCCceEEEEEcCC----CC--EEEecCCcccEEEEECchh
Confidence 11356789999998 66 6789999999999999874
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.5e-41 Score=368.42 Aligned_cols=365 Identities=19% Similarity=0.244 Sum_probs=283.4
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhh
Q 000707 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAK 371 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k 371 (1341)
.+.+|..+++++.|+|+|+.|++|+.|.|+|+||..+..+.+++.++.. .|+.++.+|+
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~------------WVlcvawsPD--------- 168 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN------------WVLCVAWSPD--------- 168 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCcc------------EEEEEEECCC---------
Confidence 3456778999999999999999999999999999988776666533222 4555555544
Q ss_pred cccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCccccc
Q 000707 372 LCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNS 451 (1341)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~ 451 (1341)
|+.|||++.||.|++||.++++.. |+
T Consensus 169 -----------------------------gk~iASG~~dg~I~lwdpktg~~~---------------------g~---- 194 (480)
T KOG0271|consen 169 -----------------------------GKKIASGSKDGSIRLWDPKTGQQI---------------------GR---- 194 (480)
T ss_pred -----------------------------cchhhccccCCeEEEecCCCCCcc---------------------cc----
Confidence 679999999999999998877532 11
Q ss_pred CcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCE
Q 000707 452 MASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPL 531 (1341)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~l 531 (1341)
.|.||..+|++|+|.|-++. +..++
T Consensus 195 --------------------------------------------~l~gH~K~It~Lawep~hl~-----------p~~r~ 219 (480)
T KOG0271|consen 195 --------------------------------------------ALRGHKKWITALAWEPLHLV-----------PPCRR 219 (480)
T ss_pred --------------------------------------------cccCcccceeEEeecccccC-----------CCccc
Confidence 13468999999999994333 36789
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccC
Q 000707 532 VALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKP 611 (1341)
Q Consensus 532 lAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~ 611 (1341)
||+++.||+|+|||+..+.++..+.||+.+|++|.|-++|-+.|.|. |.+|++|+...|. ..+.++|
T Consensus 220 las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~----------DrtIkvw~a~dG~--~~r~lkG- 286 (480)
T KOG0271|consen 220 LASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQ----------DRTIKVWRALDGK--LCRELKG- 286 (480)
T ss_pred eecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCC----------CceEEEEEccchh--HHHhhcc-
Confidence 99999999999999999999999999999999999999988876554 5599999999988 7777787
Q ss_pred CCCCeEEEEECCCCCEEE-EEECCCcEEEEeccCCCceeeecc-CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCcc
Q 000707 612 ERAPIRALRASSSGRYLL-ILFRDAPVEVWAMTKNPIMLRSLA-LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADT 689 (1341)
Q Consensus 612 ~~~~I~~i~~SpdG~~La-s~s~D~~I~vWDl~~t~~~l~~l~-~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~ 689 (1341)
|...|+.++.|-| |++ +|..|.+ +....... ..-.+++ +.
T Consensus 287 HahwvN~lalsTd--y~LRtgaf~~t---------~~~~~~~se~~~~Al~-------rY-------------------- 328 (480)
T KOG0271|consen 287 HAHWVNHLALSTD--YVLRTGAFDHT---------GRKPKSFSEEQKKALE-------RY-------------------- 328 (480)
T ss_pred cchheeeeeccch--hhhhccccccc---------cccCCChHHHHHHHHH-------HH--------------------
Confidence 8899999999865 332 3333322 11111110 0000000 00
Q ss_pred CCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCE
Q 000707 690 TDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPH 767 (1341)
Q Consensus 690 ~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~ 767 (1341)
+......+|.+++++.|.++.+|+....+- |-..++||...|+.++| |+++
T Consensus 329 --------------------~~~~~~~~erlVSgsDd~tlflW~p~~~kk-------pi~rmtgHq~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 329 --------------------EAVLKDSGERLVSGSDDFTLFLWNPFKSKK-------PITRMTGHQALVNHVSFSPDGRY 381 (480)
T ss_pred --------------------HHhhccCcceeEEecCCceEEEeccccccc-------chhhhhchhhheeeEEECCCccE
Confidence 000001258899999999999999732210 11124589999999998 9999
Q ss_pred EEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCC
Q 000707 768 VVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPG 846 (1341)
Q Consensus 768 LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~ 846 (1341)
+|++|-|+.||+||.++|+ +.+|.||-+.|+.|+||.| . ..|++++.|.|++|||+++.+ +...| .||.
T Consensus 382 IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaD--s----RLlVS~SkDsTLKvw~V~tkK-l~~DL-pGh~-- 451 (480)
T KOG0271|consen 382 IASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSAD--S----RLLVSGSKDSTLKVWDVRTKK-LKQDL-PGHA-- 451 (480)
T ss_pred EEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccC--c----cEEEEcCCCceEEEEEeeeee-ecccC-CCCC--
Confidence 9999999999999999999 7899999999999999999 2 567889999999999999987 76666 7886
Q ss_pred CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 847 ~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
..|..++|+|| |. .+++|+.|..+|+|.
T Consensus 452 DEVf~vDwspD----G~--rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPD----GQ--RVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCC----Cc--eeecCCCceEEEeec
Confidence 68999999998 66 679999999999994
No 8
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=364.69 Aligned_cols=602 Identities=14% Similarity=0.163 Sum_probs=408.4
Q ss_pred CCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCc
Q 000707 34 PSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGR 112 (1341)
Q Consensus 34 ~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~ 112 (1341)
..| .+|......|.+||.+++...+.|-.-.. ...||+++=+|+ ..+||.|..||.
T Consensus 32 ~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~---------k~evt~l~~~~d--------------~l~lAVGYaDGs 88 (888)
T KOG0306|consen 32 GKGRAVAVSALEQVNIWDLRTGEIEKKLILLKK---------KAEVTCLRSSDD--------------ILLLAVGYADGS 88 (888)
T ss_pred CCCcEEEEeccccEeEEeeecchhhhhhhhhcc---------cceEEEeeccCC--------------cceEEEEecCce
Confidence 347 66665677899999999955443332221 017999987765 577999999999
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCC
Q 000707 113 VALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDA 192 (1341)
Q Consensus 113 I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~ 192 (1341)
|+|||..++.....| .||.+ .|+.|.|...| ..|||++.|+.|.+||+...+-+.++.+|.+.|+..-|.- +.
T Consensus 89 Vqif~~~s~~~~~tf--ngHK~-AVt~l~fd~~G---~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~-~~ 161 (888)
T KOG0306|consen 89 VQIFSLESEEILITF--NGHKA-AVTTLKFDKIG---TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN-GD 161 (888)
T ss_pred EEeeccCCCceeeee--ccccc-ceEEEEEcccC---ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC-CC
Confidence 999999988776664 78988 99999999877 8999999999999999987777888999999988776765 67
Q ss_pred CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000707 193 RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1341)
Q Consensus 193 ~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~ 272 (1341)
+.+++.|.|++|++||+..+.. ++-. -.+...+..+++.+ +.+++++
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhC-----f~Th--------------------------vd~r~Eiw~l~~~~--~~lvt~~ 208 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHC-----FETH--------------------------VDHRGEIWALVLDE--KLLVTAG 208 (888)
T ss_pred eEEEEeccCceEEEEeccccee-----eeEE--------------------------ecccceEEEEEEec--ceEEEEe
Confidence 8899999999999999866421 1110 01344688888887 6899999
Q ss_pred cCCeEEEEEcCCC-------ce-----eEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceee-eeec-c
Q 000707 273 FPRELVVFDLQYE-------TP-----LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVH-VMCT-M 338 (1341)
Q Consensus 273 ~d~~I~iwDl~t~-------~~-----l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~-~~~~-~ 338 (1341)
.|.++.+|++... +. .+++. ..+......++..+++++|+|-+.|..|.++++++.+.+. .+.- +
T Consensus 209 ~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~-rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~ 287 (888)
T KOG0306|consen 209 TDSELKVWELAFEDDEKETNRYISTKLRGTFI-RQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKL 287 (888)
T ss_pred cCCceEEEEeecccccccccccceeeccceee-eccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHH
Confidence 9999999999321 11 12221 1122345666777888999999999999999876432110 0000 0
Q ss_pred cccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEc
Q 000707 339 EELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418 (1341)
Q Consensus 339 ~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl 418 (1341)
-.. .-.+... . ....+..+.+.. + +....+..+ +=+.+++. .|......+|++ -.+.+|..+.+
T Consensus 288 k~~-Kkka~t~---e-~~~~v~~sl~~~--i-~r~~~ir~~-----~kiks~dv--~~~~~~~~~lv~-l~nNtv~~ysl 351 (888)
T KOG0306|consen 288 KRA-KKKAETE---E-NEDDVEKSLSDE--I-KRLETIRTS-----AKIKSFDV--TPSGGTENTLVL-LANNTVEWYSL 351 (888)
T ss_pred HHh-hhhcccc---c-cccchhhhHHHH--H-HHHHheech-----hheeEEEE--EecCCcceeEEE-eecCceEEEEe
Confidence 000 0000000 0 000011111100 0 000000000 00001111 111111123443 35555555555
Q ss_pred cccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeecc
Q 000707 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQ 498 (1341)
Q Consensus 419 ~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~ 498 (1341)
....... + ++ ...-.-.+.
T Consensus 352 ~~s~~~~---------------p-----~~-----------------------------------------~~~~~i~~~ 370 (888)
T KOG0306|consen 352 ENSGKTS---------------P-----EA-----------------------------------------DRTSNIEIG 370 (888)
T ss_pred ccCCCCC---------------c-----cc-----------------------------------------cccceeeec
Confidence 4310000 0 00 000001245
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEec
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~ 578 (1341)
||.+.|.+++++. +..++++| ..+.|+||+..+.++++++.. +-+.+..|.|+++.+..+.
T Consensus 371 GHR~dVRsl~vS~----------------d~~~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 371 GHRSDVRSLCVSS----------------DSILLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGT 431 (888)
T ss_pred cchhheeEEEeec----------------Cceeeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEec
Confidence 7999999999986 34555555 467899999999999999864 3678889999888776554
Q ss_pred CCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccC--C--Cceeeecc-
Q 000707 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTK--N--PIMLRSLA- 653 (1341)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~--t--~~~l~~l~- 653 (1341)
. .++++++|+.++. .+.+.+ .|++.|..++.+||++.+++|+.|++|++||..- . ++.-+.++
T Consensus 432 k---------~Gel~vfdlaS~~--l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 432 K---------NGELQVFDLASAS--LVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred c---------CCceEEEEeehhh--hhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 3 4689999998876 333334 4899999999999999999999999999999820 0 11101011
Q ss_pred ---------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEe
Q 000707 654 ---------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL 724 (1341)
Q Consensus 654 ---------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~ 724 (1341)
..+-+++.| |++..+|++.
T Consensus 500 ~~~rtLel~ddvL~v~~S----------------------------------------------------pdgk~LaVsL 527 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVS----------------------------------------------------PDGKLLAVSL 527 (888)
T ss_pred ccceEEeccccEEEEEEc----------------------------------------------------CCCcEEEEEe
Confidence 112233333 4467899999
Q ss_pred cCCcEEEEEecCCeeecccCCCCCCccccccceEEEEe--ecCCEEEEEeCCCcEEEEECCCCcee-eeccCCCcEEEEE
Q 000707 725 ANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA--YRLPHVVMGDRSGNIRWWDVTTGHSS-QFSTHREGIRRIK 801 (1341)
Q Consensus 725 ~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla--~dg~~LasGs~DgtI~lWDl~tg~~~-~l~gH~~~V~~V~ 801 (1341)
.|+++++|-++.-+..- +|-||.=+|.||. +|++.+++||.|++|++|-++-|.|+ .|.+|...|++|.
T Consensus 528 LdnTVkVyflDtlKFfl--------sLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFL--------SLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred ccCeEEEEEecceeeee--------eecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999998755321 2336666677765 49999999999999999999999975 6899999999999
Q ss_pred EccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEc
Q 000707 802 FSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1341)
Q Consensus 802 fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv 881 (1341)
|-|.. ..+-+++.|+.|+-||-...+.+ ..+ .+|. ..|++++-.|. |+ +++|+|.|.+||+|..
T Consensus 600 F~P~~------~~FFt~gKD~kvKqWDg~kFe~i-q~L-~~H~--~ev~cLav~~~----G~--~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 600 FLPKT------HLFFTCGKDGKVKQWDGEKFEEI-QKL-DGHH--SEVWCLAVSPN----GS--FVVSSSHDKSIRLWER 663 (888)
T ss_pred Ecccc------eeEEEecCcceEEeechhhhhhh-eee-ccch--heeeeeEEcCC----CC--eEEeccCCceeEeeec
Confidence 99983 45788999999999999998844 455 6775 68999999997 66 7899999999999997
Q ss_pred cC
Q 000707 882 NT 883 (1341)
Q Consensus 882 ~~ 883 (1341)
..
T Consensus 664 td 665 (888)
T KOG0306|consen 664 TD 665 (888)
T ss_pred cC
Confidence 65
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=5.2e-36 Score=339.63 Aligned_cols=522 Identities=16% Similarity=0.221 Sum_probs=373.4
Q ss_pred CCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcc-e-eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 23 SRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQ-L-ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~-~-~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
|...++-+-+||.| .+|+|- .+.|+|||...-. + ..+++--.+ +|.-++|++|+
T Consensus 58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-----------~I~Di~Wd~ds----------- 115 (603)
T KOG0318|consen 58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-----------PIKDISWDFDS----------- 115 (603)
T ss_pred ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-----------ccccceeCCCC-----------
Confidence 44456778999999 788884 5799999986522 2 223333344 89999999874
Q ss_pred CCCcEEEEEeCC----CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEE--
Q 000707 99 SSHLLLAAADRH----GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM-- 172 (1341)
Q Consensus 99 p~g~~LASg~~d----G~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i-- 172 (1341)
++||..+.. |.+.+||. |..+-+ +.||++ .|+++.|-|..+ -.+++++.|++|.+++- -+.
T Consensus 116 ---~RI~avGEGrerfg~~F~~DS--G~SvGe--i~GhSr-~ins~~~KpsRP--fRi~T~sdDn~v~ffeG---PPFKF 182 (603)
T KOG0318|consen 116 ---KRIAAVGEGRERFGHVFLWDS--GNSVGE--ITGHSR-RINSVDFKPSRP--FRIATGSDDNTVAFFEG---PPFKF 182 (603)
T ss_pred ---cEEEEEecCccceeEEEEecC--CCccce--eeccce-eEeeeeccCCCc--eEEEeccCCCeEEEeeC---CCeee
Confidence 555444322 67889985 555566 478998 999999999874 78999999999999984 332
Q ss_pred -EEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000707 173 -WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1341)
Q Consensus 173 -~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1341)
..+..|+.-|.|++|+| |+.+|++.|.||.++++|-.. . .+-.. ++. +..
T Consensus 183 k~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGkt--g----e~vg~----------l~~------------~~a 233 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKT--G----EKVGE----------LED------------SDA 233 (603)
T ss_pred eecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCC--c----cEEEE----------ecC------------CCC
Confidence 22334567899999999 999999999999999987311 1 01111 110 123
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCc-cceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 252 ~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
|.+.|..+++|||+.++++++.|.+++|||+.++.++.+++....- .-.+.+.+ +.+.|++.+.+|+|.+.+.....
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW--qkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW--QKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE--eCCeEEEEEcCcEEEEecccCCC
Confidence 5567899999999999999999999999999999999998865321 11222332 47899999999999999987666
Q ss_pred eeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcC
Q 000707 331 QVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDD 410 (1341)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~D 410 (1341)
..+++.++.. .|++++.+++ +++|.|++-|
T Consensus 312 ~~~~i~GHnK------------~ITaLtv~~d--------------------------------------~~~i~SgsyD 341 (603)
T KOG0318|consen 312 VLKVISGHNK------------SITALTVSPD--------------------------------------GKTIYSGSYD 341 (603)
T ss_pred hhheeccccc------------ceeEEEEcCC--------------------------------------CCEEEeeccC
Confidence 4455433222 5666666654 5699999999
Q ss_pred CeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCcccccee
Q 000707 411 GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFK 490 (1341)
Q Consensus 411 G~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 490 (1341)
|.|.-|+..++..-+ +
T Consensus 342 G~I~~W~~~~g~~~~------------------------~---------------------------------------- 357 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDR------------------------L---------------------------------------- 357 (603)
T ss_pred ceEEEEecCCccccc------------------------c----------------------------------------
Confidence 999999987663211 0
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEE--eecCCCeEEEEEc
Q 000707 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF--SVHNGTVRGLRWL 568 (1341)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l--~~H~~~V~~l~fs 568 (1341)
.| ++|..-|+.++..- ..-+.+.++|.++++-++..+...+.. .-- ..-.+++..
T Consensus 358 ---~g--~~h~nqI~~~~~~~-----------------~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-~QP~~lav~ 414 (603)
T KOG0318|consen 358 ---AG--KGHTNQIKGMAASE-----------------SGELFTIGWDDTLRVISLKDNGYTKSEVVKLG-SQPKGLAVL 414 (603)
T ss_pred ---cc--ccccceEEEEeecC-----------------CCcEEEEecCCeEEEEecccCcccccceeecC-CCceeEEEc
Confidence 00 13566777777653 245668889999999998654433221 111 222478888
Q ss_pred CCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCce
Q 000707 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM 648 (1341)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~ 648 (1341)
+++.++..++.. .|.+..-.++- +. .. -.-...+++++|+++++|+|+.|+.|+|+.+ ....+
T Consensus 415 ~d~~~avv~~~~----------~iv~l~~~~~~---~~-~~--~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl-~g~~l 477 (603)
T KOG0318|consen 415 SDGGTAVVACIS----------DIVLLQDQTKV---SS-IP--IGYESSAVAVSPDGSEVAVGGQDGKVHVYSL-SGDEL 477 (603)
T ss_pred CCCCEEEEEecC----------cEEEEecCCcc---ee-ec--cccccceEEEcCCCCEEEEecccceEEEEEe-cCCcc
Confidence 876555444432 34444322221 11 11 1234579999999999999999999999999 44332
Q ss_pred ee-----eccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEE
Q 000707 649 LR-----SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA 723 (1341)
Q Consensus 649 l~-----~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~ 723 (1341)
.. ....+++.+++||+ +..||++
T Consensus 478 ~ee~~~~~h~a~iT~vaySpd----------------------------------------------------~~yla~~ 505 (603)
T KOG0318|consen 478 KEEAKLLEHRAAITDVAYSPD----------------------------------------------------GAYLAAG 505 (603)
T ss_pred cceeeeecccCCceEEEECCC----------------------------------------------------CcEEEEe
Confidence 21 12246788888876 4678999
Q ss_pred ecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEE
Q 000707 724 LANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRR 799 (1341)
Q Consensus 724 ~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~ 799 (1341)
...+.+.+||+..+.+.. ..| .-|...|+||+| +..++|+|+.|-+|.+|+++.-. +.-...|...|..
T Consensus 506 Da~rkvv~yd~~s~~~~~--~~w-----~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~ 578 (603)
T KOG0318|consen 506 DASRKVVLYDVASREVKT--NRW-----AFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNS 578 (603)
T ss_pred ccCCcEEEEEcccCceec--cee-----eeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCcee
Confidence 999999999997766532 222 238889999999 88899999999999999997643 3344789999999
Q ss_pred EEEccCCCCCCCCCEEEEEECCCeEEEEECC
Q 000707 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1341)
Q Consensus 800 V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~ 830 (1341)
|.|--+ ..|++.+.|-.||+|.+.
T Consensus 579 v~wlde-------~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 579 VAWLDE-------STVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEecC-------ceEEeccCcceeEEeccc
Confidence 999876 579999999999999864
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=347.50 Aligned_cols=521 Identities=18% Similarity=0.229 Sum_probs=382.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCC
Q 000707 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASP 179 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~ 179 (1341)
||.-+.|- ...+|-|.|.+..+.. ++++ .+.. -|..++.||+| .+|++..+.|...+-+......++.+.+ .
T Consensus 25 dG~sviSP-vGNrvsv~dLknN~S~-Tl~~-e~~~-NI~~ialSp~g---~lllavdE~g~~~lvs~~~r~Vlh~f~f-k 96 (893)
T KOG0291|consen 25 DGNSVISP-VGNRVSVFDLKNNKSY-TLPL-ETRY-NITRIALSPDG---TLLLAVDERGRALLVSLLSRSVLHRFNF-K 96 (893)
T ss_pred CCCEEEec-cCCEEEEEEccCCcce-eEEe-ecCC-ceEEEEeCCCc---eEEEEEcCCCcEEEEecccceeeEEEee-c
Confidence 34556664 3568999999876543 2323 2334 79999999987 8999999999998888887778888888 7
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 180 EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 180 ~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
..|.|+.|+| |++.+|++.. ..+.+|...+.... .+. ...+.+.+ .++-..+.++
T Consensus 97 ~~v~~i~fSP-ng~~fav~~g-n~lqiw~~P~~~~~-----~~~-------pFvl~r~~-----------~g~fddi~si 151 (893)
T KOG0291|consen 97 RGVGAIKFSP-NGKFFAVGCG-NLLQIWHAPGEIKN-----EFN-------PFVLHRTY-----------LGHFDDITSI 151 (893)
T ss_pred CccceEEECC-CCcEEEEEec-ceeEEEecCcchhc-----ccC-------cceEeeee-----------cCCccceeEE
Confidence 8999999999 9999988864 67788865331110 110 00111111 1233468899
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeeccc
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTME 339 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~ 339 (1341)
.||-|.|.+++++.|.+++||+.+..+.+....+.++...++...|..|...+++.+.||.|.+|.....
T Consensus 152 ~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~---------- 221 (893)
T KOG0291|consen 152 DWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLR---------- 221 (893)
T ss_pred EeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCC----------
Confidence 9999999999999999999999998877777777778888999999999999999999999999975411
Q ss_pred ccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEcc
Q 000707 340 ELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLT 419 (1341)
Q Consensus 340 ~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~ 419 (1341)
|.. +.+ .-+ . .+| .
T Consensus 222 ---P~~---------------~~~--------~~k---------------------------d------~eg-------~ 235 (893)
T KOG0291|consen 222 ---PPE---------------LDK--------AEK---------------------------D------EEG-------S 235 (893)
T ss_pred ---Ccc---------------ccc--------ccc---------------------------c------ccc-------c
Confidence 100 000 000 0 011 0
Q ss_pred ccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEe--eec
Q 000707 420 AEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLD--GQL 497 (1341)
Q Consensus 420 ~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~--g~l 497 (1341)
+...... .|+. + ....++..+ --+
T Consensus 236 ~d~~~~~------------------~~Ee-------------------------------k-----~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 236 DDEEMDE------------------DGEE-------------------------------K-----THKIFWYKTKKHYL 261 (893)
T ss_pred ccccccc------------------cchh-------------------------------h-----hcceEEEEEEeeee
Confidence 0000000 0000 0 000001110 001
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEe
Q 000707 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 498 ~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s 577 (1341)
...+..|++.+|++ .-.+||+|-.+|...+|++..-.+++.++.-..+|..+.|+.-|-.++++
T Consensus 262 n~~~~kvtaa~fH~----------------~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHK----------------GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred cccccceeeeeccC----------------CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEc
Confidence 11247899999998 36799999999999999999999999999988899999999888888887
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC---
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL--- 654 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~--- 654 (1341)
+... +.+-||++.+.. .+-..++ |...|+++++||||+++|+|+.|+.|||||. .++-|+.++..
T Consensus 326 ~~kl--------gQLlVweWqsEs--YVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts 393 (893)
T KOG0291|consen 326 CSKL--------GQLLVWEWQSES--YVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTS 393 (893)
T ss_pred CCcc--------ceEEEEEeeccc--eeeeccc-cccceeeEEECCCCcEEEeccCCCcEEEEec-cCceEEEEeccCCC
Confidence 7642 378999998765 3333355 8899999999999999999999999999999 78999988873
Q ss_pred ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe
Q 000707 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1341)
Q Consensus 655 ~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv 734 (1341)
.|+++.|+-. +..+.+.+.||+|+.||+
T Consensus 394 ~Vt~v~f~~~----------------------------------------------------g~~llssSLDGtVRAwDl 421 (893)
T KOG0291|consen 394 GVTAVQFTAR----------------------------------------------------GNVLLSSSLDGTVRAWDL 421 (893)
T ss_pred ceEEEEEEec----------------------------------------------------CCEEEEeecCCeEEeeee
Confidence 4788888722 356788999999999999
Q ss_pred cCCe-eecccCCCCCCccccccceEEEEeec--CCEEEEEeCCC-cEEEEECCCCce-eeeccCCCcEEEEEEccCCCCC
Q 000707 735 HGRR-IRDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSG-NIRWWDVTTGHS-SQFSTHREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 735 ~~~~-v~~~~~~~~~~~l~~~~~~v~sla~d--g~~LasGs~Dg-tI~lWDl~tg~~-~~l~gH~~~V~~V~fSP~~~gd 809 (1341)
...+ .|.+. .|.. -...|++.| |..+.+|+.|. .|.+|+++||++ -.+.||.++|.++.|+|. +
T Consensus 422 kRYrNfRTft--~P~p------~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~--~- 490 (893)
T KOG0291|consen 422 KRYRNFRTFT--SPEP------IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD--G- 490 (893)
T ss_pred cccceeeeec--CCCc------eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc--c-
Confidence 5433 34321 1211 246788886 99999999886 799999999994 568999999999999999 5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCcee
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKI 887 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~~ 887 (1341)
..||++++|+|||+||+-.......++.. ...|+++.|.|+ |+ .||+++-||.|.+||+..+...
T Consensus 491 ---~~LaS~SWDkTVRiW~if~s~~~vEtl~i----~sdvl~vsfrPd----G~--elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 491 ---SLLASGSWDKTVRIWDIFSSSGTVETLEI----RSDVLAVSFRPD----GK--ELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred ---CeEEeccccceEEEEEeeccCceeeeEee----ccceeEEEEcCC----CC--eEEEEEecceEEEEEhhhceee
Confidence 68999999999999999665323334422 246999999998 77 6799999999999999876654
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-35 Score=346.35 Aligned_cols=543 Identities=14% Similarity=0.190 Sum_probs=380.9
Q ss_pred CCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcE
Q 000707 26 NFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1341)
.+.++.-+|+. +||.| .+++|+||+..+...+.++.||+. .||.++|.-. |.+
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-----------AVt~l~fd~~--------------G~r 121 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKA-----------AVTTLKFDKI--------------GTR 121 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeeccccc-----------ceEEEEEccc--------------Cce
Confidence 35666667887 78888 789999999999999999999998 9999999865 689
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceE
Q 000707 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLS 183 (1341)
Q Consensus 104 LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~ 183 (1341)
||||+.|+.|+|||+..-.-+.. +.||.. .|+.+-|..+. .+|++.+.|+.|++||+.+..|+.+.-.|...+.
T Consensus 122 laSGskDt~IIvwDlV~E~Gl~r--L~GHkd-~iT~~~F~~~~---~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw 195 (888)
T KOG0306|consen 122 LASGSKDTDIIVWDLVGEEGLFR--LRGHKD-SITQALFLNGD---SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIW 195 (888)
T ss_pred EeecCCCccEEEEEeccceeeEE--eecchH-HHhHHhccCCC---eEEEEeccCceEEEEecccceeeeEEecccceEE
Confidence 99999999999999865555445 578988 89998888744 7999999999999999999999999988899999
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc
Q 000707 184 CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP 263 (1341)
Q Consensus 184 ~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSp 263 (1341)
.+++++ ..+++++.|+-+.+|++.-. ++-......+++ ....++.+ ......+.++.-+
T Consensus 196 ~l~~~~---~~lvt~~~dse~~v~~L~~~--~D~~~~~~~~s~--~~~G~~~r--------------qsk~R~i~l~~d~ 254 (888)
T KOG0306|consen 196 ALVLDE---KLLVTAGTDSELKVWELAFE--DDEKETNRYIST--KLRGTFIR--------------QSKGREINLVTDF 254 (888)
T ss_pred EEEEec---ceEEEEecCCceEEEEeecc--ccccccccccee--eccceeee--------------ccCCceeEEeecC
Confidence 999976 78888889999999987331 110000000100 00011111 0112245567778
Q ss_pred CCCceEEEEcCCeEEEEEcCCCceeEEE------------e--------------------cCCCccce--EEEEEcCCC
Q 000707 264 HWRHIIFVTFPRELVVFDLQYETPLFSA------------A--------------------LPRGCAKF--LDVLADPNN 309 (1341)
Q Consensus 264 dg~~l~~~~~d~~I~iwDl~t~~~l~~~------------~--------------------l~~~~~~~--~~v~~~pdg 309 (1341)
++|.++.-+.|+.+.+|.+.+.+.+... . .-+....+ .+|.+++..
T Consensus 255 s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~ 334 (888)
T KOG0306|consen 255 SDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGT 334 (888)
T ss_pred cccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCc
Confidence 8888888889999988888654221000 0 00011122 233444333
Q ss_pred C-EEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCC-ceEEEEEccCcchhhhhhhcccCCCCCCCCccccC
Q 000707 310 D-LLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSP-SILAVLVSQSESTIQNVAKLCLDAPHSPSANVDID 387 (1341)
Q Consensus 310 ~-~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~-~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~ 387 (1341)
. .|+. -.+.+|......-.. +. .|.| ++..+.+- ||-.=+
T Consensus 335 ~~~lv~-l~nNtv~~ysl~~s~---------------~~-~p~~~~~~~i~~~---------------------GHR~dV 376 (888)
T KOG0306|consen 335 ENTLVL-LANNTVEWYSLENSG---------------KT-SPEADRTSNIEIG---------------------GHRSDV 376 (888)
T ss_pred ceeEEE-eecCceEEEEeccCC---------------CC-Cccccccceeeec---------------------cchhhe
Confidence 3 4444 455666655443100 00 0111 11111110 110001
Q ss_pred CCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCccccccccccccc
Q 000707 388 SPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQL 467 (1341)
Q Consensus 388 ~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~ 467 (1341)
..+.++ .+ ..++..+..+.|++|+..+.++.++.. |
T Consensus 377 Rsl~vS-----~d-~~~~~Sga~~SikiWn~~t~kciRTi~----------------~---------------------- 412 (888)
T KOG0306|consen 377 RSLCVS-----SD-SILLASGAGESIKIWNRDTLKCIRTIT----------------C---------------------- 412 (888)
T ss_pred eEEEee-----cC-ceeeeecCCCcEEEEEccCcceeEEec----------------c----------------------
Confidence 112221 11 133333467899999999887765411 0
Q ss_pred ccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000707 468 EHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS 547 (1341)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~ 547 (1341)
.-+.+..|.| .+.++++|+.+|.+.|+|+.
T Consensus 413 ----------------------------------~y~l~~~Fvp----------------gd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 413 ----------------------------------GYILASKFVP----------------GDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred ----------------------------------ccEEEEEecC----------------CCceEEEeccCCceEEEEee
Confidence 1123456777 57899999999999999999
Q ss_pred CCcEEEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEcc-----CCce-eee-----EEeccCCCCC
Q 000707 548 ANAVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLR-----SGIN-RAF-----RVLQKPERAP 615 (1341)
Q Consensus 548 tg~~~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~-----tG~~-~~l-----~~l~~~~~~~ 615 (1341)
+..++-+..+|.++|.+|+.+||+ .++++|. |++|++||.. .|.. +.+ +++. -+..
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa----------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe--l~dd 510 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSA----------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE--LEDD 510 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecC----------CcEEEEEeEEEEeccCcccceeeeeccceEEe--cccc
Confidence 999988889999999999999988 6776555 4599999973 1321 111 2222 2457
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec---cCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCC
Q 000707 616 IRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDG 692 (1341)
Q Consensus 616 I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l---~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g 692 (1341)
|.|+.+||||+|||++--|++++||-+ .+....-++ +.||.++..||+
T Consensus 511 vL~v~~Spdgk~LaVsLLdnTVkVyfl-DtlKFflsLYGHkLPV~smDIS~D---------------------------- 561 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVSLLDNTVKVYFL-DTLKFFLSLYGHKLPVLSMDISPD---------------------------- 561 (888)
T ss_pred EEEEEEcCCCcEEEEEeccCeEEEEEe-cceeeeeeecccccceeEEeccCC----------------------------
Confidence 899999999999999999999999998 566544333 247888877765
Q ss_pred cccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEE
Q 000707 693 VSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVM 770 (1341)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~Las 770 (1341)
+..+++++.|.+|++|-++=..++. +|-+|+.+|.++.| +..+..+
T Consensus 562 ------------------------SklivTgSADKnVKiWGLdFGDCHK--------S~fAHdDSvm~V~F~P~~~~FFt 609 (888)
T KOG0306|consen 562 ------------------------SKLIVTGSADKNVKIWGLDFGDCHK--------SFFAHDDSVMSVQFLPKTHLFFT 609 (888)
T ss_pred ------------------------cCeEEeccCCCceEEeccccchhhh--------hhhcccCceeEEEEcccceeEEE
Confidence 3568899999999999986333321 23478899999999 6678899
Q ss_pred EeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 771 GDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 771 Gs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
++.||.|+-||-..-+ +.++.+|...|++++.+|+ | +++++++.|.+||+|.-..
T Consensus 610 ~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~--G----~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPN--G----SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ecCcceEEeechhhhhhheeeccchheeeeeEEcCC--C----CeEEeccCCceeEeeeccC
Confidence 9999999999987654 7889999999999999999 5 7899999999999997544
No 12
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=9e-35 Score=322.97 Aligned_cols=275 Identities=18% Similarity=0.207 Sum_probs=236.1
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC---cEEEE
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS---RLVSF 576 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~---~llS~ 576 (1341)
-+.||+.+.|++ ++..||+|+.+|.++||+..+...+.+|.||++.|.++.|.|.. .++++
T Consensus 174 d~rPis~~~fS~----------------ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~ 237 (459)
T KOG0272|consen 174 DTRPISGCSFSR----------------DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATA 237 (459)
T ss_pred CCCcceeeEeec----------------CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeee
Confidence 367899999987 68999999999999999999999999999999999999999973 45555
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--- 653 (1341)
+ .|+++++|++.+.+ ++..+.+ |...|..++|+|+|+||++++.|.+-++||+ .++..+....
T Consensus 238 s----------~Dgtvklw~~~~e~--~l~~l~g-H~~RVs~VafHPsG~~L~TasfD~tWRlWD~-~tk~ElL~QEGHs 303 (459)
T KOG0272|consen 238 S----------ADGTVKLWKLSQET--PLQDLEG-HLARVSRVAFHPSGKFLGTASFDSTWRLWDL-ETKSELLLQEGHS 303 (459)
T ss_pred c----------cCCceeeeccCCCc--chhhhhc-chhhheeeeecCCCceeeecccccchhhccc-ccchhhHhhcccc
Confidence 4 45699999998765 7777777 8899999999999999999999999999999 5765443222
Q ss_pred CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 654 ~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
..|.+++|.|+ |..+++++.|..-+|||
T Consensus 304 ~~v~~iaf~~D----------------------------------------------------GSL~~tGGlD~~~RvWD 331 (459)
T KOG0272|consen 304 KGVFSIAFQPD----------------------------------------------------GSLAATGGLDSLGRVWD 331 (459)
T ss_pred cccceeEecCC----------------------------------------------------CceeeccCccchhheee
Confidence 45778888765 35678899999999999
Q ss_pred ec-CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCC
Q 000707 734 VH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 734 v~-~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd 809 (1341)
+. |+++.- |.||...|.+|+| +|.+||+|+.|++++|||++..+ +.++++|..-|+.|+|+|.. |
T Consensus 332 lRtgr~im~---------L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~-g- 400 (459)
T KOG0272|consen 332 LRTGRCIMF---------LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQE-G- 400 (459)
T ss_pred cccCcEEEE---------ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccC-C-
Confidence 95 555532 3478999999999 89999999999999999999876 78899999999999999963 4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
.+|+++++|++++||...+..++ +++ .||. ..|.+++.+++ +. .+++++.|++||+|.
T Consensus 401 ---~fL~TasyD~t~kiWs~~~~~~~-ksL-aGHe--~kV~s~Dis~d----~~--~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 ---YFLVTASYDNTVKIWSTRTWSPL-KSL-AGHE--GKVISLDISPD----SQ--AIATSSFDRTIKLWR 458 (459)
T ss_pred ---eEEEEcccCcceeeecCCCcccc-hhh-cCCc--cceEEEEeccC----Cc--eEEEeccCceeeecc
Confidence 68999999999999999999855 566 8997 78999999998 55 789999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-32 Score=314.30 Aligned_cols=605 Identities=15% Similarity=0.147 Sum_probs=381.0
Q ss_pred CCceEeCC-CCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 27 FGSADLSP-SGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 27 ~~a~~~s~-~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
.+.++..| .|++||.+++.|+++|++..+.-+.+.-|.. .+|+|+|||+ |+++|
T Consensus 40 ~~gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk-----------~~t~vAfS~~--------------Gryva 94 (1080)
T KOG1408|consen 40 ANGLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRK-----------PLTCVAFSQN--------------GRYVA 94 (1080)
T ss_pred CCcccccccccceeeccCcEEEEEcccccchhheecccCc-----------ceeEEEEcCC--------------CcEEE
Confidence 45788888 4799999999999999998888777888887 8999999976 68899
Q ss_pred EEe--CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC--CCeEEEEECCCCeEEEEEeCCCCc
Q 000707 106 AAD--RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING--PSVLSLYNTTSASCMWKYDASPEY 181 (1341)
Q Consensus 106 Sg~--~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~--d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1341)
+|- ..-.++||++....++.+| .+|.- .|.+++|+|.+ .++++.+. |..|.+||.+..-....-.- .+.
T Consensus 95 tGEcG~~pa~kVw~la~h~vVAEf--vdHKY-~vtcvaFsp~~---kyvvSVGsQHDMIVnv~dWr~N~~~asnki-ss~ 167 (1080)
T KOG1408|consen 95 TGECGRTPASKVWSLAFHGVVAEF--VDHKY-NVTCVAFSPGN---KYVVSVGSQHDMIVNVNDWRVNSSGASNKI-SSV 167 (1080)
T ss_pred ecccCCCccceeeeeccccchhhh--hhccc-cceeeeecCCC---cEEEeeccccceEEEhhhhhhccccccccc-cee
Confidence 986 6678999999998888885 66755 99999999987 88888765 45677888763322111111 457
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc----ccceeeeeEEEe------------------------cCcchhh-
Q 000707 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK----EDEVVVKELQIQ------------------------TDCTELL- 232 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~----~~~~~~k~~~i~------------------------~~~~~l~- 232 (1341)
|..++|+- |+..+++.+. .-|.+|.+.++. +....++.+... +..++|.
T Consensus 168 Vsav~fsE-dgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvE 245 (1080)
T KOG1408|consen 168 VSAVAFSE-DGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVE 245 (1080)
T ss_pred EEEEEEcc-CCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceee
Confidence 88999998 9999999986 567778775532 111111111000 0001110
Q ss_pred ----hhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCC------------
Q 000707 233 ----KLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRG------------ 296 (1341)
Q Consensus 233 ----~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~------------ 296 (1341)
||-.-|-.. ..+...|+ +. ..+.|+.+..++.|+||+.++-.-+.+++-..-
T Consensus 246 FSsRRLLDKWVqc--------RTTnAnCI--cV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~ 313 (1080)
T KOG1408|consen 246 FSSRRLLDKWVQC--------RTTNANCI--CV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPE 313 (1080)
T ss_pred echhhhhhhhhhh--------hcccccee--ee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhccccc
Confidence 111111100 00111233 33 357888899999999999988655554432110
Q ss_pred -------ccc---eEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchh
Q 000707 297 -------CAK---FLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTI 366 (1341)
Q Consensus 297 -------~~~---~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~ 366 (1341)
.+. .+.+.|++..+.|.|.-.|.+|.+||++.-..+.....+ -.+ +.-|+.+-.-|.+
T Consensus 314 ~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~----lyH-----S~ciW~Ve~~p~n--- 381 (1080)
T KOG1408|consen 314 PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM----LYH-----SACIWDVENLPCN--- 381 (1080)
T ss_pred ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee----eec-----cceeeeecccccc---
Confidence 011 244556778999999999999999998754322211000 000 0012222222211
Q ss_pred hhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccc-c
Q 000707 367 QNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVAL-C 445 (1341)
Q Consensus 367 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~-~ 445 (1341)
+..+...+ -| ..-+++.|+||+||+|++........++++. ++.....++| +
T Consensus 382 -------------------v~~~~~ac-lp----~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNi---ls~~l~ki~y~d 434 (1080)
T KOG1408|consen 382 -------------------VHSPTAAC-LP----RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNI---LSANLSKIPYED 434 (1080)
T ss_pred -------------------ccCccccc-CC----ccceeEecCCCcEEEeecccccccceeeccc---chhhhhcCcccc
Confidence 11122111 12 1258999999999999998743222222210 1111111111 1
Q ss_pred CcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCC
Q 000707 446 GTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYP 525 (1341)
Q Consensus 446 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~ 525 (1341)
++ +.+-+|... + ..+- .+...+ +-...+.+|+++|
T Consensus 435 ~~-----------~q~~~d~~~---------~------~fdk----a~~s~~-d~r~G~R~~~vSp-------------- 469 (1080)
T KOG1408|consen 435 ST-----------QQIMHDASA---------G------IFDK----ALVSTC-DSRFGFRALAVSP-------------- 469 (1080)
T ss_pred Cc-----------hhhhhhccC---------C------cccc----cchhhc-CcccceEEEEECC--------------
Confidence 10 000000000 0 0000 000000 1134688999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCC---CcEEEEecCCcccccCcccCeEEEEEccCCce
Q 000707 526 AVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN---SRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN 602 (1341)
Q Consensus 526 ~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d---~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~ 602 (1341)
+|+.||+|..-|++||||+..-...-.+.+|...|.+++|+-. .++++ +++-|.-|.|+|+...-
T Consensus 470 --~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLA---------SasrdRlIHV~Dv~rny- 537 (1080)
T KOG1408|consen 470 --DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLA---------SASRDRLIHVYDVKRNY- 537 (1080)
T ss_pred --CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhh---------hccCCceEEEEeccccc-
Confidence 6999999999999999999887777788999999999999743 23332 23344578999985331
Q ss_pred eeeEEeccCCCCCeEEEEECCCC--CEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCccccc
Q 000707 603 RAFRVLQKPERAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSL 680 (1341)
Q Consensus 603 ~~l~~l~~~~~~~I~~i~~SpdG--~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~ 680 (1341)
-++.++.+ |...|++|.|--.| ..+++++.|+.|. ++..+...--+.+. .+. +
T Consensus 538 ~l~qtld~-HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~----------r~t----------~--- 592 (1080)
T KOG1408|consen 538 DLVQTLDG-HSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFP----------RHT----------Q--- 592 (1080)
T ss_pred chhhhhcc-cccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceecc----------ccc----------c---
Confidence 24455555 88999999999877 7789999998764 34311000000000 000 0
Q ss_pred ccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec-CCeeecccCCCCCCccccccceEE
Q 000707 681 SSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLIT 759 (1341)
Q Consensus 681 ~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~-~~~v~~~~~~~~~~~l~~~~~~v~ 759 (1341)
.++-+.+++ ...++...++++++.|..|+||+++ |++.+.|+ +. .+|+|...
T Consensus 593 -------t~~ktTlYD--------------m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK----gs--~~~eG~lI 645 (1080)
T KOG1408|consen 593 -------TLSKTTLYD--------------MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK----GS--RDHEGDLI 645 (1080)
T ss_pred -------ccccceEEE--------------eeeCCCcceEEEEecccceEEEeccccceeeeec----cc--ccCCCceE
Confidence 000011111 1123445788999999999999995 55555443 21 15666655
Q ss_pred EEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 760 AMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 760 sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
-+.. .|-+||+...|+++.++|.-+|+ ..++.||...|+.++|++| . +.|++.+.||-|-||.+..
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nD--C----kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLND--C----KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeeccc--c----hhheeecCCceEEEEECch
Confidence 5555 68899999999999999999999 5789999999999999999 4 7899999999999999864
No 14
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-34 Score=317.14 Aligned_cols=281 Identities=17% Similarity=0.214 Sum_probs=232.8
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccC
Q 000707 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1341)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~ 375 (1341)
+..|+..+.+++|++.|++++-+|.+++|++.+...+.++.++.. .+.++.|.|..
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~------------~v~~~~fhP~~------------ 229 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS------------RVGAAVFHPVD------------ 229 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEecccc------------ceeeEEEccCC------------
Confidence 345777888999999999999999999999998887777744322 56667776641
Q ss_pred CCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCc
Q 000707 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASS 455 (1341)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~ 455 (1341)
++..|||++.||++++|++..+.. +
T Consensus 230 ------------------------~~~~lat~s~Dgtvklw~~~~e~~--------------------------l----- 254 (459)
T KOG0272|consen 230 ------------------------SDLNLATASADGTVKLWKLSQETP--------------------------L----- 254 (459)
T ss_pred ------------------------CccceeeeccCCceeeeccCCCcc--------------------------h-----
Confidence 134899999999999999875421 1
Q ss_pred ccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEE
Q 000707 456 ADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALG 535 (1341)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsG 535 (1341)
+.+.||...|..++|+| +|++|+++
T Consensus 255 ---------------------------------------~~l~gH~~RVs~VafHP----------------sG~~L~Ta 279 (459)
T KOG0272|consen 255 ---------------------------------------QDLEGHLARVSRVAFHP----------------SGKFLGTA 279 (459)
T ss_pred ---------------------------------------hhhhcchhhheeeeecC----------------CCceeeec
Confidence 13456889999999999 69999999
Q ss_pred eCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCC
Q 000707 536 TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAP 615 (1341)
Q Consensus 536 s~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~ 615 (1341)
+.|.+-|+||+.++..+....||+..|.+|+|.+||.+++ +|+.|+.-+|||+++|+ ++-.+.+ |..+
T Consensus 280 sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~---------tGGlD~~~RvWDlRtgr--~im~L~g-H~k~ 347 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAA---------TGGLDSLGRVWDLRTGR--CIMFLAG-HIKE 347 (459)
T ss_pred ccccchhhcccccchhhHhhcccccccceeEecCCCceee---------ccCccchhheeecccCc--EEEEecc-cccc
Confidence 9999999999999998888899999999999999999885 56778889999999999 5555677 9999
Q ss_pred eEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCccc
Q 000707 616 IRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVST 695 (1341)
Q Consensus 616 I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~ 695 (1341)
|.+|.|||.|..||+|+.|++++|||+ +....+.+++
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDL-R~r~~ly~ip------------------------------------------ 384 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDL-RMRSELYTIP------------------------------------------ 384 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeee-cccccceecc------------------------------------------
Confidence 999999999999999999999999999 4443333222
Q ss_pred ccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee---cCCEEEEEe
Q 000707 696 PTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGD 772 (1341)
Q Consensus 696 ~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs 772 (1341)
+|...|+.|.| .|.+|++++
T Consensus 385 ---------------------------------------------------------AH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 385 ---------------------------------------------------------AHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred ---------------------------------------------------------cccchhhheEecccCCeEEEEcc
Confidence 12222333333 477999999
Q ss_pred CCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEE
Q 000707 773 RSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1341)
Q Consensus 773 ~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWD 828 (1341)
.|+++++|...+.+ ++++.||.+.|.++..+|+ + +.|++++.|+|||+|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d--~----~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPD--S----QAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccC--C----ceEEEeccCceeeecc
Confidence 99999999999988 6889999999999999999 5 7899999999999994
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-32 Score=289.18 Aligned_cols=291 Identities=15% Similarity=0.228 Sum_probs=235.5
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC-----CCcEEEEEeecCCCeEEE
Q 000707 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS-----ANAVTASFSVHNGTVRGL 565 (1341)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~-----tg~~~~~l~~H~~~V~~l 565 (1341)
+.+.|.|.||+..|+.++..+. +-..+.+++.|.+|.+|++. .|..++.|.||+..|..+
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~---------------~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv 69 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIK---------------NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDV 69 (315)
T ss_pred heeeeeecCCCceEEEEEeecC---------------CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecce
Confidence 3467788999999999998872 45789999999999999985 466789999999999999
Q ss_pred EEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCC
Q 000707 566 RWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKN 645 (1341)
Q Consensus 566 ~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t 645 (1341)
..++|+.++. ++++|+++++||+.+|+ +.+.+.| |..-|.+++||+|.+.+++|++|++|++|++ ..
T Consensus 70 ~~s~dg~~al---------S~swD~~lrlWDl~~g~--~t~~f~G-H~~dVlsva~s~dn~qivSGSrDkTiklwnt-~g 136 (315)
T KOG0279|consen 70 VLSSDGNFAL---------SASWDGTLRLWDLATGE--STRRFVG-HTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT-LG 136 (315)
T ss_pred EEccCCceEE---------eccccceEEEEEecCCc--EEEEEEe-cCCceEEEEecCCCceeecCCCcceeeeeee-cc
Confidence 9999986652 34567799999999997 5566667 8889999999999999999999999999998 44
Q ss_pred Cceeeecc-----CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeE
Q 000707 646 PIMLRSLA-----LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1341)
Q Consensus 646 ~~~l~~l~-----~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~l 720 (1341)
. +..++. .-|+++.|+|.. ....+
T Consensus 137 ~-ck~t~~~~~~~~WVscvrfsP~~--------------------------------------------------~~p~I 165 (315)
T KOG0279|consen 137 V-CKYTIHEDSHREWVSCVRFSPNE--------------------------------------------------SNPII 165 (315)
T ss_pred c-EEEEEecCCCcCcEEEEEEcCCC--------------------------------------------------CCcEE
Confidence 4 333322 236889999751 12457
Q ss_pred EEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEE
Q 000707 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIR 798 (1341)
Q Consensus 721 a~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~ 798 (1341)
++++.|++|++||+++.+++. .|.||.+.++.+++ ||..+++|+.||.+.+||++.++......|...|.
T Consensus 166 vs~s~DktvKvWnl~~~~l~~--------~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~ 237 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRT--------TFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVN 237 (315)
T ss_pred EEccCCceEEEEccCCcchhh--------ccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEe
Confidence 899999999999998877753 24578899999888 99999999999999999999988655567899999
Q ss_pred EEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccc-c--CC---CCCCcEEEEEEcCCCCCCCCCeEEEEEEC
Q 000707 799 RIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLL-Q--PQ---FPGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1341)
Q Consensus 799 ~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~-~--gh---~~~~~V~~l~ws~~~~~~g~~~~Las~s~ 872 (1341)
+++|+|+ .+.+.+..+..|+|||++++..+ ..+. . |- ......++++|+++ |. .|..|-.
T Consensus 238 sl~fspn-------rywL~~at~~sIkIwdl~~~~~v-~~l~~d~~g~s~~~~~~~clslaws~d----G~--tLf~g~t 303 (315)
T KOG0279|consen 238 SLCFSPN-------RYWLCAATATSIKIWDLESKAVV-EELKLDGIGPSSKAGDPICLSLAWSAD----GQ--TLFAGYT 303 (315)
T ss_pred eEEecCC-------ceeEeeccCCceEEEeccchhhh-hhccccccccccccCCcEEEEEEEcCC----Cc--EEEeeec
Confidence 9999999 56555567888999999998743 2221 1 11 11245789999998 55 6789999
Q ss_pred CCcEEEEEcc
Q 000707 873 DSSFRLIEVN 882 (1341)
Q Consensus 873 DgtIrvWdv~ 882 (1341)
|+.||+|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999985
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.1e-31 Score=277.12 Aligned_cols=273 Identities=14% Similarity=0.203 Sum_probs=224.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
.-+||+++.|.|||+|.+.+|.|.++++--.+.|+.|+.+|+++.++++.. ..|+++|++++...++.++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~----------qhvRlyD~~S~np~Pv~t~ 79 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN----------QHVRLYDLNSNNPNPVATF 79 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC----------CeeEEEEccCCCCCceeEE
Confidence 348899999999999999999999999877789999999999988866553 2799999999987788888
Q ss_pred ccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCC
Q 000707 609 QKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHK 686 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~ 686 (1341)
.+ |...|++|.|..||+++.+|+.||++||||+ +...+.|.+. .+|+.+..+|.
T Consensus 80 e~-h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl-R~~~~qR~~~~~spVn~vvlhpn---------------------- 135 (311)
T KOG0315|consen 80 EG-HTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL-RSLSCQRNYQHNSPVNTVVLHPN---------------------- 135 (311)
T ss_pred ec-cCCceEEEEEeecCeEEEecCCCceEEEEec-cCcccchhccCCCCcceEEecCC----------------------
Confidence 77 8889999999999999999999999999999 7877777665 45666665543
Q ss_pred CccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEe--ec
Q 000707 687 ADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA--YR 764 (1341)
Q Consensus 687 ~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla--~d 764 (1341)
-..|+++..+|.|++||+..+.... ..+|+. .-.|.+++ +|
T Consensus 136 ------------------------------QteLis~dqsg~irvWDl~~~~c~~--~liPe~-----~~~i~sl~v~~d 178 (311)
T KOG0315|consen 136 ------------------------------QTELISGDQSGNIRVWDLGENSCTH--ELIPED-----DTSIQSLTVMPD 178 (311)
T ss_pred ------------------------------cceEEeecCCCcEEEEEccCCcccc--ccCCCC-----CcceeeEEEcCC
Confidence 1346789999999999996553321 112322 12355544 59
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-------eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc
Q 000707 765 LPHVVMGDRSGNIRWWDVTTGH-------SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN 837 (1341)
Q Consensus 765 g~~LasGs~DgtI~lWDl~tg~-------~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~ 837 (1341)
|.+|+.+...|+.++|++-+++ +.+|+.|.+.|.++.|||+ + ++||+++.|+|++||++++.-.+..
T Consensus 179 gsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd--~----k~lat~ssdktv~iwn~~~~~kle~ 252 (311)
T KOG0315|consen 179 GSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPD--V----KYLATCSSDKTVKIWNTDDFFKLEL 252 (311)
T ss_pred CcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCC--C----cEEEeecCCceEEEEecCCceeeEE
Confidence 9999999999999999997753 2467999999999999999 5 8999999999999999988722333
Q ss_pred ccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCcee
Q 000707 838 SLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKI 887 (1341)
Q Consensus 838 ~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~~ 887 (1341)
.+ .||. .|+++.+|+.| +. +|++|+.|+++|+|++..++.+
T Consensus 253 ~l-~gh~--rWvWdc~FS~d----g~--YlvTassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 253 VL-TGHQ--RWVWDCAFSAD----GE--YLVTASSDHTARLWDLSAGKEV 293 (311)
T ss_pred Ee-ecCC--ceEEeeeeccC----cc--EEEecCCCCceeecccccCcee
Confidence 33 6775 69999999998 55 8999999999999999998764
No 17
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.2e-28 Score=287.83 Aligned_cols=617 Identities=17% Similarity=0.228 Sum_probs=362.9
Q ss_pred CCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 27 FGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 27 ~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
....+|+|.+++|||++..|.+|||.....+.+|+||.. .|+|++|-|.... -..++|
T Consensus 17 ~~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-----------~VnC~~~l~~s~~-----------~a~~vs 74 (764)
T KOG1063|consen 17 PKVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLDGHVA-----------RVNCVHWLPTSEI-----------VAEMVS 74 (764)
T ss_pred cccccccccceEEecCCceEEEeCcccceeEEeccCCcc-----------ceEEEEEcccccc-----------cceEEE
Confidence 456788999999999999999999999989999999999 9999999997631 128999
Q ss_pred EeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC-----------------
Q 000707 107 ADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA----------------- 169 (1341)
Q Consensus 107 g~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg----------------- 169 (1341)
|+.||+|++|.++.-..+....+++|.+ ++. |+.-.- ........|+++.+||.+.-
T Consensus 75 G~sD~~v~lW~l~~~~~~~i~~~~g~~~-~~~--cv~a~~---~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ip 148 (764)
T KOG1063|consen 75 GDSDGRVILWKLRDEYLIKIYTIQGHCK-ECV--CVVARS---SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIP 148 (764)
T ss_pred ccCCCcEEEEEEeehheEEEEeecCcce-eEE--EEEeee---eEEEeeccCceEEEeecCCCceeeehheehhhhhHhh
Confidence 9999999999998554444444566654 443 333211 12222256677777776211
Q ss_pred ---------------------------------eEEEEEeCCCCceEEEEEcCCCC--CEEEEEeCCCeEEEEEecCCcc
Q 000707 170 ---------------------------------SCMWKYDASPEYLSCIRRNPFDA--RHFCVLGLKGLLLSVRVLGQKE 214 (1341)
Q Consensus 170 ---------------------------------~~i~~~~~~~~~v~~~~fsP~d~--~~la~~~~dG~i~~~d~~~~~~ 214 (1341)
+.+..+.+|.+-|.+++|..+.+ -.||++|.|..|++|.+.....
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 12234556777788888876543 4678888899999998755321
Q ss_pred cceeeeeEEEec--Ccc---hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCcee-
Q 000707 215 DEVVVKELQIQT--DCT---ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL- 288 (1341)
Q Consensus 215 ~~~~~k~~~i~~--~~~---~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l- 288 (1341)
.+...++....+ +.+ .+..+.-.++. ..-..+|..+|.++-++|.+..|++++.|+++.||-..+.+-+
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~-----eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiW 303 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISF-----EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIW 303 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEeh-----hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceE
Confidence 111111111000 000 00000000000 0113367778999999999999999999999999999876433
Q ss_pred -EEEec---CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcc
Q 000707 289 -FSAAL---PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSES 364 (1341)
Q Consensus 289 -~~~~l---~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~ 364 (1341)
.++.+ .+....|....++|+++.+++-+.-|..++|..+... .+++ + |.++ +
T Consensus 304 v~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~-~w~~---~---~~iS----------------G- 359 (764)
T KOG1063|consen 304 VDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT-FWTQ---E---PVIS----------------G- 359 (764)
T ss_pred EEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc-ceee---c---cccc----------------c-
Confidence 22222 2224569999999999999999999999999843221 1221 1 1110 0
Q ss_pred hhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccc-cccccccccCCCccccccc
Q 000707 365 TIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAG-DLQKDAIKSGMDADVIDVA 443 (1341)
Q Consensus 365 i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~-~~~~~~~~~g~~~~~~~v~ 443 (1341)
..+.++++...|+ |..|.++|.|.+-|++-.-..+.. .+.- . ..-++-++..++
T Consensus 360 ----H~~~V~dv~W~ps-------------------GeflLsvs~DQTTRlFa~wg~q~~wHEia-R-PQiHGyDl~c~~ 414 (764)
T KOG1063|consen 360 ----HVDGVKDVDWDPS-------------------GEFLLSVSLDQTTRLFARWGRQQEWHEIA-R-PQIHGYDLTCLS 414 (764)
T ss_pred ----ccccceeeeecCC-------------------CCEEEEeccccceeeecccccccceeeec-c-cccccccceeee
Confidence 1233334433332 669999999999998743311100 0000 0 011112222222
Q ss_pred ccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCC-Cccc------
Q 000707 444 LCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSP-SLTA------ 516 (1341)
Q Consensus 444 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~-~~~~------ 516 (1341)
|... .++ +++|-..+|..+ |.+| ++..
T Consensus 415 ~vn~----------------------------------------~~~-----FVSgAdEKVlRv-F~aPk~fv~~l~~i~ 448 (764)
T KOG1063|consen 415 FVNE----------------------------------------DLQ-----FVSGADEKVLRV-FEAPKSFVKSLMAIC 448 (764)
T ss_pred hccC----------------------------------------Cce-----eeecccceeeee-ecCcHHHHHHHHHHh
Confidence 2110 011 111122222221 1111 0000
Q ss_pred --------ccccCCCCCCC---CCCEEEEEeCCCcEEEEeCCCC-----------------------cEEEEEeecCCCe
Q 000707 517 --------TLARGGNYPAV---AVPLVALGTQSGAVDVVDVSAN-----------------------AVTASFSVHNGTV 562 (1341)
Q Consensus 517 --------~~~~~~~~~~~---~~~llAsGs~DGtI~lWDl~tg-----------------------~~~~~l~~H~~~V 562 (1341)
.++.|-+-|+- ..+..---+.+|....--.++- ..++.|.||-..|
T Consensus 449 g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv 528 (764)
T KOG1063|consen 449 GKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEV 528 (764)
T ss_pred CccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeE
Confidence 11111111110 0111100122222200000000 0234678999999
Q ss_pred EEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 563 RGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 563 ~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
.+++.+|++.+++.++-... .....|+||+..+-. ....+.+ |.-.|+.++|||||+||+++++|+++.+|..
T Consensus 529 ~~l~~s~~gnliASaCKS~~----~ehAvI~lw~t~~W~--~~~~L~~-HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 529 YALAISPTGNLIASACKSSL----KEHAVIRLWNTANWL--QVQELEG-HSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred EEEEecCCCCEEeehhhhCC----ccceEEEEEeccchh--hhheecc-cceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 99999999988876653211 122368999976644 3444566 8889999999999999999999999999987
Q ss_pred cCCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeE
Q 000707 643 TKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1341)
Q Consensus 643 ~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~l 720 (1341)
.++-..-..+. ++.+.+-|+-+- .++...|
T Consensus 602 ~~~~~~e~~fa~~k~HtRIIWdcsW------------------------------------------------~pde~~F 633 (764)
T KOG1063|consen 602 QEDIKDEFRFACLKAHTRIIWDCSW------------------------------------------------SPDEKYF 633 (764)
T ss_pred ecccchhhhhccccccceEEEEccc------------------------------------------------Cccccee
Confidence 22211111121 123334443110 1223449
Q ss_pred EEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-------cCCEEEEEeCCCcEEEEECC------C-Cc
Q 000707 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-------RLPHVVMGDRSGNIRWWDVT------T-GH 786 (1341)
Q Consensus 721 a~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-------dg~~LasGs~DgtI~lWDl~------t-g~ 786 (1341)
|+++.|.+|++|.....+.. +..++ ....+...|+++++ .+..++.|-..|.|.+|... + +.
T Consensus 634 aTaSRDK~VkVW~~~~~~d~-~i~~~---a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~ 709 (764)
T KOG1063|consen 634 ATASRDKKVKVWEEPDLRDK-YISRF---ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT 709 (764)
T ss_pred EEecCCceEEEEeccCchhh-hhhhh---chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence 99999999999998544211 00111 11134467889988 34478999999999999965 1 11
Q ss_pred ------eeeeccCCCcEEEEEEccCCCCCC--CC--CEEEEEECCCeEEEEECC
Q 000707 787 ------SSQFSTHREGIRRIKFSPVVPGDR--SR--GRIAVLFHDNTFSVFDLD 830 (1341)
Q Consensus 787 ------~~~l~gH~~~V~~V~fSP~~~gd~--~~--~~Las~s~DgtI~IWDl~ 830 (1341)
.....+|.+.|+.++|+|..+.+. .. -.|++++.|.++||+++.
T Consensus 710 ~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 710 FNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 112357889999999999732111 01 237999999999999864
No 18
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-30 Score=320.56 Aligned_cols=588 Identities=17% Similarity=0.214 Sum_probs=375.8
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC---C---cEEEEEeecCCCeEEEEEcCCCc-EE
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA---N---AVTASFSVHNGTVRGLRWLGNSR-LV 574 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t---g---~~~~~l~~H~~~V~~l~fs~d~~-ll 574 (1341)
...+.|+|++ +..+ ...+||.|.+||+|.+||... + .++.++..|++.|++|+|++... ++
T Consensus 65 ~rF~kL~W~~-----------~g~~-~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGS-----------YGSH-SHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccceeeeecc-----------cCCC-ccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 4556788887 2111 124899999999999999864 2 25677889999999999998664 54
Q ss_pred EEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCC-CCEEEEEECCCcEEEEeccCCCceeeecc
Q 000707 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1341)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~Spd-G~~Las~s~D~~I~vWDl~~t~~~l~~l~ 653 (1341)
+ +|+.+++|.|||+..-+ .++.-..-.-.+.|.+++|+.. .+.||+++.++.+-|||+ +..+.+-.+.
T Consensus 133 A---------SGa~~geI~iWDlnn~~-tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDl-r~~~pii~ls 201 (1049)
T KOG0307|consen 133 A---------SGADDGEILIWDLNKPE-TPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDL-RKKKPIIKLS 201 (1049)
T ss_pred e---------ccCCCCcEEEeccCCcC-CCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccc-cCCCcccccc
Confidence 3 45557899999997632 2332111113457899999865 567899999999999999 4433332222
Q ss_pred C-----ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCc
Q 000707 654 L-----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1341)
Q Consensus 654 ~-----~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~ 728 (1341)
. .+.+++|+|+.. .++++++.|
T Consensus 202 ~~~~~~~~S~l~WhP~~a---------------------------------------------------Tql~~As~d-- 228 (1049)
T KOG0307|consen 202 DTPGRMHCSVLAWHPDHA---------------------------------------------------TQLLVASGD-- 228 (1049)
T ss_pred cCCCccceeeeeeCCCCc---------------------------------------------------eeeeeecCC--
Confidence 1 234566665421 111111111
Q ss_pred EEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCC
Q 000707 729 LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVV 806 (1341)
Q Consensus 729 I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~ 806 (1341)
+..-.|.+||++--. .+.+.+|...|.++.|.+..
T Consensus 229 -------------------------------------------d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 229 -------------------------------------------DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred -------------------------------------------CCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 012358899987543 56788999999999999972
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCce
Q 000707 807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKK 886 (1341)
Q Consensus 807 ~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~ 886 (1341)
. .+|++++.|+.|.+|+.+++| +...+.. .+.|+.++.|+|. .+-+++.++.||.|.|+.+.....
T Consensus 266 ~-----~lllSsgkD~~ii~wN~~tgE-vl~~~p~---~~nW~fdv~w~pr-----~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 266 P-----RLLLSSGKDNRIICWNPNTGE-VLGELPA---QGNWCFDVQWCPR-----NPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred c-----hhhhcccCCCCeeEecCCCce-EeeecCC---CCcceeeeeecCC-----CcchhhhheeccceeeeeeecCCc
Confidence 2 578999999999999999998 4344422 3589999999997 665789999999999999986533
Q ss_pred ecccccccchhcccCCCCcccccccccchHHHHHHHHHhCCCCCcccccc-CCcccCCCCCCCCCCChhhhh-hhhccCC
Q 000707 887 IGYTSQSRAIKERFRPMPLCLPILLPTSHALALQMILQLGVKPSWFNTCS-TTIKKRPHLIPGTPSSQKDLR-SYMIGLP 964 (1341)
Q Consensus 887 ~~~~~~~~~~~~~~~~~pv~~~~~l~~~~~~~lr~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 964 (1341)
.. ..++. .+. .+-|-..-|+.+|.|+++|. +..|.+ +|++++++... .+-|+
T Consensus 332 ~~------~~~~~----k~~----------~a~~~~~~l~~~PkW~~~P~~Gasf~f----ggkLvtf~~~~~~V~I~-- 385 (1049)
T KOG0307|consen 332 DL------VQQAQ----KIA----------QAAQPSIPLKKPPKWIRRPLDGASFAF----GGKLVTFEPESKGVFIT-- 385 (1049)
T ss_pred cc------hhhhh----hhh----------hhccccccccCCcceeecccccceeec----CceEEEEeccccccccc--
Confidence 11 00000 000 00011223677899999999 898887 77777776653 44442
Q ss_pred CCCCccchHHHHhhcccccccccccchHHHHHHHhhhcchhhH------HHH--HHHHHcCCchHHHHHHhhHHHHHHHH
Q 000707 965 PIGDTVVPEMLLKVLEPYRKEGCILDDERARLYATVVNKGYAA------RFA--FAAAVFGETSEALFWLQLPRALNHLM 1036 (1341)
Q Consensus 965 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~------r~~--~~a~~fg~~~~~~fw~~~~~~~~~~~ 1036 (1341)
| ++..++.+- ... -......+|..+|+++..+ |.. ++-++|++..+..|-.+|++....+-
T Consensus 386 ---q--~e~~~l~~~-----~~l-~~alk~~~l~~~c~kk~~~~~~e~ek~~W~lLk~~~e~~sr~K~~~~Lgy~k~~~e 454 (1049)
T KOG0307|consen 386 ---Q--TEKSLLDRN-----TAL-SLALKDANLGDYCEKKLVESESEEEKLNWGLLKALLERDSRTKLLSLLGYVKDDLE 454 (1049)
T ss_pred ---c--chhhhcCch-----hHH-HHhhccchHHHHHHHHhhhhhhhHHHHHHHHHHHHhccchhhHHHHHhccCccchh
Confidence 2 233333222 111 1111234678888877433 222 33444444444444443322222221
Q ss_pred HhccCCCCCCCCCCCCchhhhhhhhhhccCCCCCCCCCcCCCcccchhhhcccchHHHHHHHHHHHHHhh-ccChHHHHH
Q 000707 1037 RKLKRSPQKAPHLAFNSELEDTMLSRITSKGKSTPGTERRDSLSEGQLRLMAFEQEELWETAAERITWHE-KLEGEQAIQ 1115 (1341)
Q Consensus 1037 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~e-~~~~~e~~~ 1115 (1341)
.+..+...++ .+..+ . . +++ .....-+ ..+....+.
T Consensus 455 ~~~~~~~~~~-----------------------------------~d~~~-~-~-~q~-----~~~~~~~~~~s~~~d~d 491 (1049)
T KOG0307|consen 455 ADQDKNVESG-----------------------------------TDTSI-F-S-EQF-----VPEPKGSGNISLDSDID 491 (1049)
T ss_pred hhhhhccccc-----------------------------------ccccc-c-c-hhh-----cccCCCCcccCCCCcHH
Confidence 1111000000 00000 0 0 000 0000000 134444568
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcCc-HH
Q 000707 1116 NRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGR-YQ 1194 (1341)
Q Consensus 1116 ~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g~-~~ 1194 (1341)
.++.+++..|++..||++||+.+ ...+|+ ++|...+.|+++++-+.+.+..-+. ..=+. +|.+.+ .+
T Consensus 492 ~~Is~alitgd~~~aV~~cl~~~-----~~a~Al---iiA~~gg~el~~~t~~~Y~~k~~~k---~s~li-~a~v~~d~~ 559 (1049)
T KOG0307|consen 492 GLISEALITGDFKSAVELCLEAN-----KMADAL---IIAHAGGTELLESTRDKYLAKSNSK---LSRLI-YAMVNRDLD 559 (1049)
T ss_pred HHHHHHHHhccHHHHHHHHHhhh-----HHHHHH---HHHhcCCHHHHHHHHHHHHHHhCCh---HHHHH-HHHHhhhHH
Confidence 89999999999999999999998 888888 9999999999999888877754332 23333 344444 55
Q ss_pred HHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHH
Q 000707 1195 EACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVL 1274 (1341)
Q Consensus 1195 ~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~~~~~~~aa~~~~ 1274 (1341)
+-+..|. ..+|+|+..+..+....++..++|.+.++||...+-....|++||+|+|+.++++.+-.+.+.-+.+.+-..
T Consensus 560 ~~ve~~~-~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~~~~~y~ 638 (1049)
T KOG0307|consen 560 DYVETCE-VKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLELAPTSYQ 638 (1049)
T ss_pred HHHhhcc-hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhcccccchHHHH
Confidence 5555544 456999999999999889999999999999988874457999999999999999999988777767777777
Q ss_pred HHHHHhhhhhcccCCCCCCCCCccCCcCCCCCCCCCCchhhhHHHHHHHHHHHHHhhhc
Q 000707 1275 ACREIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLVHLC 1333 (1341)
Q Consensus 1275 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1333 (1341)
++.|..-+....+.- +++....-.. ..+.|-+|-+.|.-.+
T Consensus 639 ~~~e~l~~~~~~l~~---------------~~~~~~~s~~---l~~~~~~yanllasQG 679 (1049)
T KOG0307|consen 639 DLAEDLMELTLKLAQ---------------FSANKTYSAG---LAKKFSEYANLLASQG 679 (1049)
T ss_pred HHHHHHHHHHhhhhh---------------cccCccccHH---HHHHHHHHHHHHHhcC
Confidence 777777776654221 1111111122 5667999999886443
No 19
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.9e-29 Score=288.38 Aligned_cols=549 Identities=15% Similarity=0.162 Sum_probs=349.4
Q ss_pred CCCCCCceEeCCCC-eEEEEc-C--CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 23 SRNNFGSADLSPSG-LLAFAS-G--SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~--~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
+|....|++||++| .+|+|- + -.|+||+...-..+..|..|+- .|++|+|+|.
T Consensus 77 sRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-----------~vtcvaFsp~------------ 133 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-----------NVTCVAFSPG------------ 133 (1080)
T ss_pred cCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccc-----------cceeeeecCC------------
Confidence 56667899999999 899884 3 3799999988778888999996 9999999986
Q ss_pred CCCcEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEE--
Q 000707 99 SSHLLLAAADR--HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK-- 174 (1341)
Q Consensus 99 p~g~~LASg~~--dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~-- 174 (1341)
+.+|+|.+. |--|.+||.+.......=.+ +. .|..++|+-++ .+.++.+ ...|++|.++.+++...
T Consensus 134 --~kyvvSVGsQHDMIVnv~dWr~N~~~asnki---ss-~Vsav~fsEdg---SYfvT~g-nrHvk~wyl~~~~Kykdpi 203 (1080)
T KOG1408|consen 134 --NKYVVSVGSQHDMIVNVNDWRVNSSGASNKI---SS-VVSAVAFSEDG---SYFVTSG-NRHVKLWYLQIQSKYKDPI 203 (1080)
T ss_pred --CcEEEeeccccceEEEhhhhhhccccccccc---ce-eEEEEEEccCC---ceeeeee-eeeEEEEEeeccccccCCc
Confidence 467887764 55677998865443332111 22 68999999887 5666654 67899999986652100
Q ss_pred -----------EeC--------C---------------------------------CCceEEEEEcCCCCCEEEEEeCCC
Q 000707 175 -----------YDA--------S---------------------------------PEYLSCIRRNPFDARHFCVLGLKG 202 (1341)
Q Consensus 175 -----------~~~--------~---------------------------------~~~v~~~~fsP~d~~~la~~~~dG 202 (1341)
+.+ + +...+|++.+ .+.++.++.+|
T Consensus 204 Pl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs---~r~I~cgCa~g 280 (1080)
T KOG1408|consen 204 PLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS---SRLIACGCAKG 280 (1080)
T ss_pred cccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee---cceEEEeeccc
Confidence 000 0 0011234443 36788888999
Q ss_pred eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEc
Q 000707 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDL 282 (1341)
Q Consensus 203 ~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl 282 (1341)
+|+++....-.--.+..+.+...++...+.+.+.... .+....+| +++.|.|.|....+..+-.|+.++|||+
T Consensus 281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s------~~~~a~fP-D~IA~~Fdet~~klscVYndhSlYvWDv 353 (1080)
T KOG1408|consen 281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS------ESSPAIFP-DAIACQFDETTDKLSCVYNDHSLYVWDV 353 (1080)
T ss_pred eeeecCcchhhhccccccccccccchhhccccccccc------ccCcccCC-ceeEEEecCCCceEEEEEcCceEEEEec
Confidence 9999753220000111111211111111111111100 11223444 5778999999888877778999999999
Q ss_pred CCCceeEEEe--cCCCccceEEE--EEc---------CCCCEEEEEecCCcEEEEeccCCceeeee----eccccccccc
Q 000707 283 QYETPLFSAA--LPRGCAKFLDV--LAD---------PNNDLLYCAHLDGKLSIWRRKEGEQVHVM----CTMEELIPSI 345 (1341)
Q Consensus 283 ~t~~~l~~~~--l~~~~~~~~~v--~~~---------pdg~~L~s~~~DgtI~lW~~~~g~~~~~~----~~~~~~~~~~ 345 (1341)
..-..++... +. |...+++| .+| --...+.++++|||||+|+...+....++ ...+- .
T Consensus 354 rD~~kvgk~~s~ly-HS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l-~--- 428 (1080)
T KOG1408|consen 354 RDVNKVGKCSSMLY-HSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL-S--- 428 (1080)
T ss_pred cccccccceeeeee-ccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh-h---
Confidence 8754332211 11 22333332 222 12446889999999999998753211111 00000 0
Q ss_pred CccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEcccccccc
Q 000707 346 GTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGD 425 (1341)
Q Consensus 346 g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~ 425 (1341)
.|.|.. +. .+.+-.....+. -..+....+.-++|.+..++++|++||+|..-|+|+++++..-..
T Consensus 429 -------ki~y~d----~~-~q~~~d~~~~~f-dka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-- 493 (1080)
T KOG1408|consen 429 -------KIPYED----ST-QQIMHDASAGIF-DKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-- 493 (1080)
T ss_pred -------cCcccc----Cc-hhhhhhccCCcc-cccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh--
Confidence 111110 00 000100000000 000112344567888888889999999999999999999865321
Q ss_pred ccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceE
Q 000707 426 LQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVT 505 (1341)
Q Consensus 426 ~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt 505 (1341)
+..++.|.+.|.
T Consensus 494 --------------------------------------------------------------------~~~~eAHesEil 505 (1080)
T KOG1408|consen 494 --------------------------------------------------------------------TCFMEAHESEIL 505 (1080)
T ss_pred --------------------------------------------------------------------hhheecccceeE
Confidence 012445888999
Q ss_pred EEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEEeecCCCeEEEEEcCCC---cEEEEecCCc
Q 000707 506 MLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS---RLVSFSYSQV 581 (1341)
Q Consensus 506 ~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~~H~~~V~~l~fs~d~---~llS~s~d~~ 581 (1341)
||.++-|.++ .++||+|+.|..|.|+|+... .++.++.+|+..|++|.|...| +.++.+.|.
T Consensus 506 cLeyS~p~~~-------------~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk- 571 (1080)
T KOG1408|consen 506 CLEYSFPVLT-------------NKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK- 571 (1080)
T ss_pred EEeecCchhh-------------hHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch-
Confidence 9999876333 479999999999999999765 3678899999999999997655 788887763
Q ss_pred ccccCcccCeEEEEEccC----CceeeeE-EeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCce
Q 000707 582 NEKSGGYINRLVVTCLRS----GINRAFR-VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF 656 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~t----G~~~~l~-~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v 656 (1341)
.++++... |. .+. ..+......+..+++.|..++++++..|+.|+|+|+ .+++..+.+++.-
T Consensus 572 ----------simFr~~qk~~~g~--~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i-~sgKq~k~FKgs~ 638 (1080)
T KOG1408|consen 572 ----------SIMFRVNQKASSGR--LFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDI-ESGKQVKSFKGSR 638 (1080)
T ss_pred ----------hhheehhccccCce--eccccccccccceEEEeeeCCCcceEEEEecccceEEEec-cccceeeeecccc
Confidence 23444422 22 111 100012346889999999999999999999999999 7998888776321
Q ss_pred EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec-
Q 000707 657 TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH- 735 (1341)
Q Consensus 657 ~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~- 735 (1341)
+.+ |.+- ....+|.+-.+|+...|.++-++|..
T Consensus 639 -----~~e---------------------------G~lI--------------Kv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 639 -----DHE---------------------------GDLI--------------KVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred -----cCC---------------------------CceE--------------EEEECCCccEEEEeecCCceEEEEecc
Confidence 000 0000 00123556788999999999999985
Q ss_pred CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCC
Q 000707 736 GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT 784 (1341)
Q Consensus 736 ~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~t 784 (1341)
|..+.. +.||...|+.|-| |-++|++.+.||-|.||.+..
T Consensus 673 gEcvA~---------m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GECVAQ---------MTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhhhh---------hcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 444321 3478888999999 889999999999999999864
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-30 Score=285.98 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=230.2
Q ss_pred eeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEE
Q 000707 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLV 574 (1341)
Q Consensus 495 g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~ll 574 (1341)
-.+.||..+|+.+-++| .-.++|+++.|++|++||..+|++.+.|.||+..|.+|.|...|+++
T Consensus 102 ~~l~g~r~~vt~v~~hp----------------~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHP----------------SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYL 165 (406)
T ss_pred hhhhccccceeeeeecc----------------CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEE
Confidence 34556899999999998 46799999999999999999999999999999999999999888654
Q ss_pred -EEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc
Q 000707 575 -SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1341)
Q Consensus 575 -S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~ 653 (1341)
+++.|- .+++||..+- .++++.+.+ |+..|.++.|-|.|.+++++++|.+|+.|++ .++-++.++.
T Consensus 166 ~tcSsDl----------~~~LWd~~~~-~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD~tik~We~-~tg~cv~t~~ 232 (406)
T KOG0295|consen 166 ATCSSDL----------SAKLWDFDTF-FRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRDNTIKAWEC-DTGYCVKTFP 232 (406)
T ss_pred EecCCcc----------chhheeHHHH-HHHHHHhcC-cccceeeEEEEecCCeeeecccccceeEEec-ccceeEEecc
Confidence 444332 4899998653 235565556 7789999999999999999999999999999 7999998887
Q ss_pred CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 654 ~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
.+- +|..- .....++..+|+++.|.++++|-
T Consensus 233 ~h~---ewvr~----------------------------------------------v~v~~DGti~As~s~dqtl~vW~ 263 (406)
T KOG0295|consen 233 GHS---EWVRM----------------------------------------------VRVNQDGTIIASCSNDQTLRVWV 263 (406)
T ss_pred Cch---HhEEE----------------------------------------------EEecCCeeEEEecCCCceEEEEE
Confidence 431 12100 00013467889999999999999
Q ss_pred ecCCeeecccCCCCCCccccccceEEEEee------------c-----CCEEEEEeCCCcEEEEECCCCc-eeeeccCCC
Q 000707 734 VHGRRIRDFRPKWPSSSFISSDGLITAMAY------------R-----LPHVVMGDRSGNIRWWDVTTGH-SSQFSTHRE 795 (1341)
Q Consensus 734 v~~~~v~~~~~~~~~~~l~~~~~~v~sla~------------d-----g~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~ 795 (1341)
+..+..+. .|..|.-.|-+++| . |+++++|+.|++||+||+.+|. +.++.||..
T Consensus 264 ~~t~~~k~--------~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdn 335 (406)
T KOG0295|consen 264 VATKQCKA--------ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDN 335 (406)
T ss_pred eccchhhh--------hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccc
Confidence 97654321 12345566777776 1 2699999999999999999998 678999999
Q ss_pred cEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCc
Q 000707 796 GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS 875 (1341)
Q Consensus 796 ~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~Dgt 875 (1341)
+|+.++|+|. | ++|+++.+|++++|||+.+.+++ .++ ..|. ..|.++||+.+ .+ ++++|+-|.+
T Consensus 336 wVr~~af~p~--G----kyi~ScaDDktlrvwdl~~~~cm-k~~-~ah~--hfvt~lDfh~~-----~p-~VvTGsVdqt 399 (406)
T KOG0295|consen 336 WVRGVAFSPG--G----KYILSCADDKTLRVWDLKNLQCM-KTL-EAHE--HFVTSLDFHKT-----AP-YVVTGSVDQT 399 (406)
T ss_pred eeeeeEEcCC--C----eEEEEEecCCcEEEEEeccceee-ecc-CCCc--ceeEEEecCCC-----Cc-eEEeccccce
Confidence 9999999998 6 89999999999999999999865 344 4565 57999999976 55 6889999999
Q ss_pred EEEEE
Q 000707 876 FRLIE 880 (1341)
Q Consensus 876 IrvWd 880 (1341)
++||.
T Consensus 400 ~KvwE 404 (406)
T KOG0295|consen 400 VKVWE 404 (406)
T ss_pred eeeee
Confidence 99997
No 21
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-27 Score=274.21 Aligned_cols=275 Identities=14% Similarity=0.200 Sum_probs=212.8
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
+|.+|.|+|- -.++..+=.+|.|.|||..+-..++.|+.. ..||.+..|.+-. +.+++|+
T Consensus 15 RVKsVd~HPt--------------ePw~la~LynG~V~IWnyetqtmVksfeV~---~~PvRa~kfiaRk---nWiv~Gs 74 (794)
T KOG0276|consen 15 RVKSVDFHPT--------------EPWILAALYNGDVQIWNYETQTMVKSFEVS---EVPVRAAKFIARK---NWIVTGS 74 (794)
T ss_pred ceeeeecCCC--------------CceEEEeeecCeeEEEecccceeeeeeeec---ccchhhheeeecc---ceEEEec
Confidence 9999999986 467888889999999999999988887653 2399999999865 7899999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000707 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1341)
.|..|+++|..|++++..+..|++.|.|++.+| ..-.+.+++.|..|++||... +|... +
T Consensus 75 DD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~---------~wa~~------q---- 134 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWEN---------EWACE------Q---- 134 (794)
T ss_pred CCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccC---------ceeee------e----
Confidence 999999999999999999999999999999999 555777889999999998743 22110 1
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccC-CCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000707 237 ELSAGAASLSPASGLFPLYMVKFTFSPH-WRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~afSpd-g~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1341)
...+|..+|.+++|.|. ....++++.|++|+||.+....+..++..|..+...+.....+|
T Consensus 135 -----------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd------- 196 (794)
T KOG0276|consen 135 -----------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD------- 196 (794)
T ss_pred -----------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------
Confidence 12345668999999985 46788999999999999987665544432221111111110001
Q ss_pred ecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccc
Q 000707 316 HLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDD 395 (1341)
Q Consensus 316 ~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1341)
T Consensus 197 -------------------------------------------------------------------------------- 196 (794)
T KOG0276|consen 197 -------------------------------------------------------------------------------- 196 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCC
Q 000707 396 TLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRN 475 (1341)
Q Consensus 396 ~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1341)
+-.|+|+++|.+|++||..+..|..
T Consensus 197 -----kpylIsgaDD~tiKvWDyQtk~CV~-------------------------------------------------- 221 (794)
T KOG0276|consen 197 -----KPYLISGADDLTIKVWDYQTKSCVQ-------------------------------------------------- 221 (794)
T ss_pred -----cceEEecCCCceEEEeecchHHHHH--------------------------------------------------
Confidence 2367888888888888887654422
Q ss_pred CCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEE
Q 000707 476 RPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF 555 (1341)
Q Consensus 476 ~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l 555 (1341)
.|+||...|.++.|+| .-+++++|++|||||||+..|-++.++|
T Consensus 222 --------------------TLeGHt~Nvs~v~fhp----------------~lpiiisgsEDGTvriWhs~Ty~lE~tL 265 (794)
T KOG0276|consen 222 --------------------TLEGHTNNVSFVFFHP----------------ELPIIISGSEDGTVRIWNSKTYKLEKTL 265 (794)
T ss_pred --------------------HhhcccccceEEEecC----------------CCcEEEEecCCccEEEecCcceehhhhh
Confidence 2456788889999998 4789999999999999999998888888
Q ss_pred eecCCCeEEEEEcCCCcEEEEecCC
Q 000707 556 SVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1341)
Q Consensus 556 ~~H~~~V~~l~fs~d~~llS~s~d~ 580 (1341)
.-.-+.|.+|+-.++++.++.++|.
T Consensus 266 n~gleRvW~I~~~k~~~~i~vG~De 290 (794)
T KOG0276|consen 266 NYGLERVWCIAAHKGDGKIAVGFDE 290 (794)
T ss_pred hcCCceEEEEeecCCCCeEEEeccC
Confidence 8878899999887777667777663
No 22
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=3.8e-28 Score=259.51 Aligned_cols=292 Identities=13% Similarity=0.148 Sum_probs=239.5
Q ss_pred CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 129 PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 129 ~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
++||.+ .|.++.|++|. +.|++++.||.+.|||.-|..+++.++....-|..++|+| .+..+|.+|.|....+++
T Consensus 51 LkGH~~-Ki~~~~ws~Ds---r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 51 LKGHLN-KIYAMDWSTDS---RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYP 125 (343)
T ss_pred eccccc-ceeeeEecCCc---CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEe
Confidence 589998 99999999987 8999999999999999999999998888788899999999 899999999999999998
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCcee
Q 000707 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL 288 (1341)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l 288 (1341)
++....... .++++. ..+|.+++-.+.|-+| .+|++++.|.+..+||+++|+.+
T Consensus 126 ls~~d~~g~--------------~~v~r~-----------l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~ 179 (343)
T KOG0286|consen 126 LSTRDAEGN--------------VRVSRE-----------LAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQT 179 (343)
T ss_pred ccccccccc--------------ceeeee-----------ecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceEE
Confidence 764211111 111111 2346678888899986 58999999999999999999999
Q ss_pred EEEecCCCccceEEEEEcC-CCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhh
Q 000707 289 FSAALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQ 367 (1341)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~ 367 (1341)
..+. +|.+.+.++...| +++.+++|+-|++.+|||++++.++++|.++|. .|.++.|-|+
T Consensus 180 ~~f~--GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes------------DINsv~ffP~----- 240 (343)
T KOG0286|consen 180 QVFH--GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES------------DINSVRFFPS----- 240 (343)
T ss_pred EEec--CCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccc------------ccceEEEccC-----
Confidence 8876 4556777777778 999999999999999999999998888844333 4555665543
Q ss_pred hhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCc
Q 000707 368 NVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGT 447 (1341)
Q Consensus 368 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~ 447 (1341)
|..++++|+|++.+++|+..++.+..
T Consensus 241 ---------------------------------G~afatGSDD~tcRlyDlRaD~~~a~--------------------- 266 (343)
T KOG0286|consen 241 ---------------------------------GDAFATGSDDATCRLYDLRADQELAV--------------------- 266 (343)
T ss_pred ---------------------------------CCeeeecCCCceeEEEeecCCcEEee---------------------
Confidence 56899999999999999987653221
Q ss_pred ccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCC
Q 000707 448 NTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAV 527 (1341)
Q Consensus 448 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~ 527 (1341)
|+.+. ...+|++++|+-
T Consensus 267 -------------ys~~~----------------------------------~~~gitSv~FS~---------------- 283 (343)
T KOG0286|consen 267 -------------YSHDS----------------------------------IICGITSVAFSK---------------- 283 (343)
T ss_pred -------------eccCc----------------------------------ccCCceeEEEcc----------------
Confidence 11000 135789999997
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEE
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTC 596 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD 596 (1341)
.|++|..|..|.++.|||.-.++.+..|.||...|.+|..+|||..++ +|++|.+++||.
T Consensus 284 SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~---------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA---------TGSWDSTLRIWA 343 (343)
T ss_pred cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE---------ecchhHheeecC
Confidence 589999999999999999999999999999999999999999997664 577888999994
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=3.4e-27 Score=251.15 Aligned_cols=220 Identities=15% Similarity=0.161 Sum_probs=185.2
Q ss_pred CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-----CCeEEEEe
Q 000707 53 SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-----LRSVVLWI 127 (1341)
Q Consensus 53 ~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~-----tg~~~~~l 127 (1341)
...+..+|++|++ .|+.++-.+.+ ...|.|+++|.+|++|++. .|..++.|
T Consensus 4 ~l~l~~tl~gh~d-----------~Vt~la~~~~~-------------~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~ 59 (315)
T KOG0279|consen 4 QLVLRGTLEGHTD-----------WVTALAIKIKN-------------SDILVSASRDKTIIVWKLTSDDIKYGVPVRRL 59 (315)
T ss_pred hheeeeeecCCCc-----------eEEEEEeecCC-------------CceEEEcccceEEEEEEeccCccccCceeeee
Confidence 3455678999999 99999999874 4689999999999999974 35666664
Q ss_pred cCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEE
Q 000707 128 DPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1341)
Q Consensus 128 ~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~ 207 (1341)
.||+. .|.++..++++ .+..+++.|+++++||+.+|++...+.+|...|.+++|+| |.+++++++.|.+|++|
T Consensus 60 --~GHsH-~v~dv~~s~dg---~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 60 --TGHSH-FVSDVVLSSDG---NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLW 132 (315)
T ss_pred --eccce-EecceEEccCC---ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeee
Confidence 78988 99999999987 8999999999999999999999999999999999999999 99999999999999999
Q ss_pred EecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC--CCceEEEEcCCeEEEEEcCCC
Q 000707 208 RVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH--WRHIIFVTFPRELVVFDLQYE 285 (1341)
Q Consensus 208 d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpd--g~~l~~~~~d~~I~iwDl~t~ 285 (1341)
+.-+. .++.+. +......|..++|+|. ...|++++.|++|++||+..-
T Consensus 133 nt~g~-------ck~t~~-----------------------~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~ 182 (315)
T KOG0279|consen 133 NTLGV-------CKYTIH-----------------------EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC 182 (315)
T ss_pred eeccc-------EEEEEe-----------------------cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc
Confidence 87552 233321 0111446888899999 678999999999999999988
Q ss_pred ceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 286 TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 286 ~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
+....+..+ ..-+..+.++|||...++|+.||.+.|||.++++.+..+
T Consensus 183 ~l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 183 QLRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred chhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 877666543 445667888999999999999999999999999866554
No 24
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.8e-25 Score=264.19 Aligned_cols=566 Identities=15% Similarity=0.164 Sum_probs=374.5
Q ss_pred cccc---cccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCC
Q 000707 12 WDCN---FMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1341)
Q Consensus 12 ~~~~---~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~~~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1341)
.||+ ...-++++++.+.|++=..+ .+-.|.++.|.+|- .+ -..+++.+|.+ .|.-+.
T Consensus 61 Yd~~kl~ll~vs~~lp~~I~alas~~~-~vy~A~g~~i~~~~--rgk~i~~~~~~~~a-----------~v~~l~----- 121 (910)
T KOG1539|consen 61 YDVNKLNLLFVSKPLPDKITALASDKD-YVYVASGNKIYAYA--RGKHIRHTTLLHGA-----------KVHLLL----- 121 (910)
T ss_pred EeccceEEEEecCCCCCceEEEEecCc-eEEEecCcEEEEEE--ccceEEEEeccccc-----------eEEEEe-----
Confidence 4554 44556667777777766433 23335667888884 34 34677888886 777653
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-E--E-EEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEE
Q 000707 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS-V--V-LWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSL 163 (1341)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~-~--~-~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1341)
|=|..|.+++.++.+.||+..+++ . + ..+ .+...+ .|++|. +|.-= =+.++.++.+|.++|
T Consensus 122 -----------~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~-~~~~~~-~Ital~-HP~TY-LNKIvvGs~~G~lql 186 (910)
T KOG1539|consen 122 -----------PFGEHLIAVDISNILFVWKTSSIQEELYLQSTF-LKVEGD-FITALL-HPSTY-LNKIVVGSSQGRLQL 186 (910)
T ss_pred -----------eecceEEEEEccCcEEEEEecccccccccccee-eeccCC-ceeeEe-cchhh-eeeEEEeecCCcEEE
Confidence 225789999999999999998851 1 1 111 122223 477663 55320 045677889999999
Q ss_pred EECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000707 164 YNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1341)
Q Consensus 164 Wd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1341)
||+.+++.++++.+....|+++.-+| --..+|+|..+|.|.++++.-+. .+..|.. .
T Consensus 187 ~Nvrt~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dk----il~sFk~------------d------ 243 (910)
T KOG1539|consen 187 WNVRTGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDK----ILMSFKQ------------D------ 243 (910)
T ss_pred EEeccCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCc----EEEEEEc------------c------
Confidence 99999999999988889999999999 77899999999999998764321 1333321 1
Q ss_pred CCCCCCCcCccceEEEEEccCCCceEEEEcC-CeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEE
Q 000707 244 SLSPASGLFPLYMVKFTFSPHWRHIIFVTFP-RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322 (1341)
Q Consensus 244 ~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d-~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~ 322 (1341)
.+.|.+++|..||+-+++.+.. |.+.+|||+..+.+.++.-. +.+.+...-++|....|++.+.|.+++
T Consensus 244 ---------~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na-h~~sv~~~~fl~~epVl~ta~~DnSlk 313 (910)
T KOG1539|consen 244 ---------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA-HYGSVTGATFLPGEPVLVTAGADNSLK 313 (910)
T ss_pred ---------ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc-ccCCcccceecCCCceEeeccCCCcee
Confidence 1247889999999988888866 88999999998887766421 234455666788888999999999999
Q ss_pred EEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCcccccccccccc
Q 000707 323 IWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKT 402 (1341)
Q Consensus 323 lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (1341)
+|-..++.-.- +++ ++ -.||...-.-+.| +..+|.
T Consensus 314 ~~vfD~~dg~p-------------------R~L---R~-------------------R~GHs~Pp~~irf----y~~~g~ 348 (910)
T KOG1539|consen 314 VWVFDSGDGVP-------------------RLL---RS-------------------RGGHSAPPSCIRF----YGSQGH 348 (910)
T ss_pred EEEeeCCCCcc-------------------hhe---ee-------------------ccCCCCCchheee----eccCcE
Confidence 99766543100 000 00 0011111101111 113477
Q ss_pred EEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCC
Q 000707 403 HLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTS 482 (1341)
Q Consensus 403 ~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1341)
.+.+++.|+++|.+++-.+..-+. .|. ....+.+.+ +..++.
T Consensus 349 ~ilsa~~Drt~r~fs~~~e~~~~~------l~~----~~~~~~~kk---------~~~~~~------------------- 390 (910)
T KOG1539|consen 349 FILSAKQDRTLRSFSVISESQSQE------LGQ----LHNKKRAKK---------VNVFST------------------- 390 (910)
T ss_pred EEEecccCcchhhhhhhHHHHhHh------hcc----ccccccccc---------ccccch-------------------
Confidence 999999999999888765543211 100 000110110 000000
Q ss_pred CccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE-EEEEe-----
Q 000707 483 SQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV-TASFS----- 556 (1341)
Q Consensus 483 ~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~-~~~l~----- 556 (1341)
+..--.+|+.+++.-. |- .. ....++.--.+-.++.|+...... ...|.
T Consensus 391 --------------~~~k~p~i~~fa~~~~-------RE-~~---W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~ 445 (910)
T KOG1539|consen 391 --------------EKLKLPPIVEFAFENA-------RE-KE---WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFK 445 (910)
T ss_pred --------------hhhcCCcceeeecccc-------hh-hh---hcceeEEecCcceEEEEeccCcccccEEecCcccc
Confidence 0000124555554320 00 11 234555555566789999976654 22222
Q ss_pred ecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCc
Q 000707 557 VHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAP 636 (1341)
Q Consensus 557 ~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~ 636 (1341)
.-...+++++.+..|.++-.+++ .++|-++++.+|..+.--.-...|..+|++++...-++.+++++.+|-
T Consensus 446 ~~~~~~~av~vs~CGNF~~IG~S---------~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 446 KDDINATAVCVSFCGNFVFIGYS---------KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred ccCcceEEEEEeccCceEEEecc---------CCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence 12267899999999888766554 358999999999732211101248889999999999999999999999
Q ss_pred EEEEeccCCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccC
Q 000707 637 VEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQD 714 (1341)
Q Consensus 637 I~vWDl~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~ 714 (1341)
++.||. +...++..+. ..++.+..+
T Consensus 517 lkfw~f-~~k~l~~~l~l~~~~~~iv~h---------------------------------------------------- 543 (910)
T KOG1539|consen 517 LKFWDF-KKKVLKKSLRLGSSITGIVYH---------------------------------------------------- 543 (910)
T ss_pred EEEEec-CCcceeeeeccCCCcceeeee----------------------------------------------------
Confidence 999999 6766655443 112211111
Q ss_pred CCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeecc
Q 000707 715 DTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFST 792 (1341)
Q Consensus 715 ~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~g 792 (1341)
-..+.+|.+..|=.|+++|+..+++.. .|.||.+.|++++| ||++|++++.|++||+||+.++.+...-.
T Consensus 544 r~s~l~a~~~ddf~I~vvD~~t~kvvR--------~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~ 615 (910)
T KOG1539|consen 544 RVSDLLAIALDDFSIRVVDVVTRKVVR--------EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL 615 (910)
T ss_pred ehhhhhhhhcCceeEEEEEchhhhhhH--------HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe
Confidence 113567888889999999997766521 24589999999999 99999999999999999999998544434
Q ss_pred CCCcEEEEEEccCCCCCCCCCEEEEEECC-CeEEEEE
Q 000707 793 HREGIRRIKFSPVVPGDRSRGRIAVLFHD-NTFSVFD 828 (1341)
Q Consensus 793 H~~~V~~V~fSP~~~gd~~~~~Las~s~D-gtI~IWD 828 (1341)
-..++..+.|||+ | .+||+..-| .-|.+|-
T Consensus 616 vd~~~~sls~SPn--g----D~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 VDSPCTSLSFSPN--G----DFLATVHVDQNGIYLWS 646 (910)
T ss_pred cCCcceeeEECCC--C----CEEEEEEecCceEEEEE
Confidence 5788999999999 6 799999877 6699995
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=2.6e-27 Score=266.57 Aligned_cols=246 Identities=17% Similarity=0.290 Sum_probs=203.3
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEec
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~ 578 (1341)
.|.+||++|+|.- .|.+|++|+.||++.|||..+|.....|.-|+.+--+|.|-.+..+++.+.
T Consensus 274 ~HkgPI~slKWnk----------------~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~t 337 (524)
T KOG0273|consen 274 QHKGPIFSLKWNK----------------KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSST 337 (524)
T ss_pred ccCCceEEEEEcC----------------CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCC
Confidence 3889999999986 689999999999999999999999999999998878899999989887665
Q ss_pred CCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---Cc
Q 000707 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---LP 655 (1341)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~---~~ 655 (1341)
+ +.|.|.-+.-.+ |..++.+ |..+|.++.|.|.|..|+++|.|+|++||.+ +...+.+.|. +.
T Consensus 338 d----------~~i~V~kv~~~~--P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~-~~~~~~~~l~~Hske 403 (524)
T KOG0273|consen 338 D----------GCIHVCKVGEDR--PVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSM-GQSNSVHDLQAHSKE 403 (524)
T ss_pred C----------ceEEEEEecCCC--cceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeec-CCCcchhhhhhhccc
Confidence 4 478888774333 6777777 8899999999999999999999999999998 5655544433 45
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
+..+.|+|.+.
T Consensus 404 i~t~~wsp~g~--------------------------------------------------------------------- 414 (524)
T KOG0273|consen 404 IYTIKWSPTGP--------------------------------------------------------------------- 414 (524)
T ss_pred eeeEeecCCCC---------------------------------------------------------------------
Confidence 66777776520
Q ss_pred CCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCE
Q 000707 736 GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 736 ~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~ 814 (1341)
++.-.+++..|++++.|++|++||+..|. +++|..|+.+|++|+|||+ | .+
T Consensus 415 ----------------------v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~--g----~y 466 (524)
T KOG0273|consen 415 ----------------------VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN--G----RY 466 (524)
T ss_pred ----------------------ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCC--C----cE
Confidence 00000145689999999999999999998 7899999999999999999 5 78
Q ss_pred EEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 815 IAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 815 Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+|+|+.||.|.||++.+++ +.+++ ++ +..|.++.|+.. |+ .|..+-.|+.+.|.|++
T Consensus 467 lAsGs~dg~V~iws~~~~~-l~~s~-~~---~~~Ifel~Wn~~----G~--kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 467 LASGSLDGCVHIWSTKTGK-LVKSY-QG---TGGIFELCWNAA----GD--KLGACASDGSVCVLDLR 523 (524)
T ss_pred EEecCCCCeeEeccccchh-eeEee-cC---CCeEEEEEEcCC----CC--EEEEEecCCCceEEEec
Confidence 9999999999999999988 55555 22 356999999987 66 56778889999999875
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=7.1e-28 Score=265.12 Aligned_cols=291 Identities=18% Similarity=0.298 Sum_probs=202.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEc-CCC---cEEEEecCCcccccCcccCeEEEEEccCCcee-
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWL-GNS---RLVSFSYSQVNEKSGGYINRLVVTCLRSGINR- 603 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs-~d~---~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~- 603 (1341)
++.+.+|++||+++|||. .|++.+++.||+++|.+++|. ++. .+++++.| .++++|-++.|+.+
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~D----------qtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMD----------QTLRLWKWNVGENKV 183 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCC----------ceEEEEEecCchhhh
Confidence 478999999999999997 589999999999999999983 343 47876655 48999988777642
Q ss_pred -eeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCccccccc
Q 000707 604 -AFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSS 682 (1341)
Q Consensus 604 -~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~ 682 (1341)
.+...+| |+.+|.+|++.++|..+++|+.|.+|+||+.+ +. .-..++ .+ +- ..+. +++.-.+.
T Consensus 184 ~~~~~~~G-Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~-~~-~~~~~E-~~-----s~--~rrk-----~~~~~~~~ 247 (423)
T KOG0313|consen 184 KALKVCRG-HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVE-TD-EEDELE-SS-----SN--RRRK-----KQKREKEG 247 (423)
T ss_pred hHHhHhcc-cccceeEEEecCCCCeEEeecccceeeecccC-CC-cccccc-cc-----ch--hhhh-----hhhhhhcc
Confidence 2222235 89999999999999999999999999999942 11 111111 00 00 0000 00000000
Q ss_pred CCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEe
Q 000707 683 KDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA 762 (1341)
Q Consensus 683 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla 762 (1341)
..+.+ +.+...+....... ..++.+.+.+++.|.+|++||+......+- +. ....++|++
T Consensus 248 ~~r~P---------~vtl~GHt~~Vs~V--~w~d~~v~yS~SwDHTIk~WDletg~~~~~---~~------~~ksl~~i~ 307 (423)
T KOG0313|consen 248 GTRTP---------LVTLEGHTEPVSSV--VWSDATVIYSVSWDHTIKVWDLETGGLKST---LT------TNKSLNCIS 307 (423)
T ss_pred cccCc---------eEEecccccceeeE--EEcCCCceEeecccceEEEEEeecccceee---ee------cCcceeEee
Confidence 00100 00001111111110 112346678999999999999965443221 10 113578888
Q ss_pred e--cCCEEEEEeCCCcEEEEECCCCc----eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC-cc
Q 000707 763 Y--RLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD-PL 835 (1341)
Q Consensus 763 ~--dg~~LasGs~DgtI~lWDl~tg~----~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~-~l 835 (1341)
+ ..++|++|+.|..||+||.+++. ..+|.||+++|.++.|+|... ..|+++++|+++++||+++.. ++
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~-----~~~~S~S~D~t~klWDvRS~k~pl 382 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE-----FQLVSGSYDNTVKLWDVRSTKAPL 382 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc-----eEEEEEecCCeEEEEEeccCCCcc
Confidence 8 77899999999999999999875 357899999999999999843 468999999999999999887 44
Q ss_pred ccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 836 ANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 836 ~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
..+ .+|. ..|++++|... . .|++||.|++||++.-.
T Consensus 383 -ydI-~~h~--DKvl~vdW~~~-----~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 383 -YDI-AGHN--DKVLSVDWNEG-----G--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred -eee-ccCC--ceEEEEeccCC-----c--eEEeccCcceEEEeccc
Confidence 344 5664 78999999852 3 68999999999998743
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.7e-27 Score=247.46 Aligned_cols=290 Identities=18% Similarity=0.245 Sum_probs=219.6
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC---cEEEEE-eecCCCeEEEEEc
Q 000707 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN---AVTASF-SVHNGTVRGLRWL 568 (1341)
Q Consensus 493 l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg---~~~~~l-~~H~~~V~~l~fs 568 (1341)
+...++||...+..++++|. .|.+||+++.|..||||+...+ .+...+ .+|+..|++++|+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~---------------~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws 70 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPG---------------KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS 70 (312)
T ss_pred eEEeecCCCCcEEEEEeccC---------------CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec
Confidence 34567889999999999992 3679999999999999999853 244444 5899999999999
Q ss_pred CCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC--
Q 000707 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP-- 646 (1341)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~-- 646 (1341)
|.|++++ ++++|.++.||--..++..++.++.| |+..|.+++||++|+|||++++|+.|-||.+. ..
T Consensus 71 p~g~~La---------~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d-eddE 139 (312)
T KOG0645|consen 71 PHGRYLA---------SASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATCSRDKSVWIWEID-EDDE 139 (312)
T ss_pred CCCcEEE---------EeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEeeCCCeEEEEEec-CCCc
Confidence 9998764 23455689999888787778888888 88999999999999999999999999999983 22
Q ss_pred -ceeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE
Q 000707 647 -IMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1341)
Q Consensus 647 -~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~ 722 (1341)
.++..+. ..|-.+.|+|. .++|++
T Consensus 140 fec~aVL~~HtqDVK~V~WHPt----------------------------------------------------~dlL~S 167 (312)
T KOG0645|consen 140 FECIAVLQEHTQDVKHVIWHPT----------------------------------------------------EDLLFS 167 (312)
T ss_pred EEEEeeeccccccccEEEEcCC----------------------------------------------------cceeEE
Confidence 2333333 23556778753 367899
Q ss_pred EecCCcEEEEEec-CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEEE
Q 000707 723 ALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRR 799 (1341)
Q Consensus 723 ~~~Dg~I~vwdv~-~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~ 799 (1341)
++.|++|++|.-. +..-.- .. ++.+|.+.|.+++| .|..|++++.|++|+||-..+.-. ..|++.++.
T Consensus 168 ~SYDnTIk~~~~~~dddW~c-~~-----tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~ 238 (312)
T KOG0645|consen 168 CSYDNTIKVYRDEDDDDWEC-VQ-----TLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYD 238 (312)
T ss_pred eccCCeEEEEeecCCCCeeE-EE-----EecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEe
Confidence 9999999999875 331100 01 13368888999999 588999999999999998653221 348899999
Q ss_pred EEEccCCCCCCCCCEEEEEECCCeEEEEECCCC--Cccccccc-cCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcE
Q 000707 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ--DPLANSLL-QPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSF 876 (1341)
Q Consensus 800 V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~--~~l~~~l~-~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtI 876 (1341)
|+|- + +.||+++.|+.|+|+.-... ++..+.+. ..+.+...|.++.|+|. ... +|+++|.||.|
T Consensus 239 v~W~-~-------~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~----~~~-~L~s~~DDG~v 305 (312)
T KOG0645|consen 239 VPWD-N-------GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPK----VSN-RLASGGDDGIV 305 (312)
T ss_pred eeec-c-------cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCC----CCC-ceeecCCCceE
Confidence 9997 4 57999999999999966532 12111111 12223468999999994 222 58899999999
Q ss_pred EEEEcc
Q 000707 877 RLIEVN 882 (1341)
Q Consensus 877 rvWdv~ 882 (1341)
++|.+.
T Consensus 306 ~~W~l~ 311 (312)
T KOG0645|consen 306 NFWELE 311 (312)
T ss_pred EEEEec
Confidence 999874
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=2.2e-27 Score=248.39 Aligned_cols=262 Identities=15% Similarity=0.176 Sum_probs=216.8
Q ss_pred ccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCc
Q 000707 13 DCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1341)
Q Consensus 13 ~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d~~~~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1341)
-|.++++-+. ..|+++..+|++ .||.|+...|+++|++++. .+.++++|+. +|++|.|.-+
T Consensus 31 ~C~rTiqh~d--sqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-----------NVtaVgF~~d--- 94 (311)
T KOG0315|consen 31 ICSRTIQHPD--SQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-----------NVTAVGFQCD--- 94 (311)
T ss_pred eEEEEEecCc--cceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC-----------ceEEEEEeec---
Confidence 3888888764 469999999998 8999999999999998865 5899999998 9999999975
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC
Q 000707 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1341)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1341)
|+++++|+.||+|+|||++...+.+.+. |.. +|+++...|+. .-|.++..+|.|++||+.+.
T Consensus 95 -----------grWMyTgseDgt~kIWdlR~~~~qR~~~---~~s-pVn~vvlhpnQ---teLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 95 -----------GRWMYTGSEDGTVKIWDLRSLSCQRNYQ---HNS-PVNTVVLHPNQ---TELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred -----------CeEEEecCCCceEEEEeccCcccchhcc---CCC-CcceEEecCCc---ceEEeecCCCcEEEEEccCC
Confidence 6899999999999999999988877753 344 99999999987 56888999999999999877
Q ss_pred eEEEEEeC-CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000707 170 SCMWKYDA-SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1341)
Q Consensus 170 ~~i~~~~~-~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1341)
.+...+.- ....|.++...| |++.++++...|..++|++..... .+.+..+++
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~-------------~s~l~P~~k------------ 210 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQT-------------ASELEPVHK------------ 210 (311)
T ss_pred ccccccCCCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCc-------------cccceEhhh------------
Confidence 66555432 235788999999 999999999999999999765211 011111111
Q ss_pred CCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 249 SGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 249 ~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
...+..++++|.||||+++|++++.|++++||+.++- ....+.+.+|..-.++.+|+.||.+|++++.|+.+|+|+...
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~ 289 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA 289 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc
Confidence 1245668999999999999999999999999999987 444556666667889999999999999999999999999998
Q ss_pred Cceeeee
Q 000707 329 GEQVHVM 335 (1341)
Q Consensus 329 g~~~~~~ 335 (1341)
++.+...
T Consensus 290 ~k~v~qy 296 (311)
T KOG0315|consen 290 GKEVRQY 296 (311)
T ss_pred Cceeeec
Confidence 8866655
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=6.2e-27 Score=263.51 Aligned_cols=325 Identities=13% Similarity=0.150 Sum_probs=238.9
Q ss_pred CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000707 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1341)
Q Consensus 177 ~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1341)
.|...|.+.+|+|.+...+++++.+-..++|++........ ....|+ +-....++. ......+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~------------~q~~lr-h~~~~~~~s----~~~nkdV 238 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGS------------TQLVLR-HCIREGGKS----VPSNKDV 238 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccc------------hhhhhh-hhhhhhccc----CCccCCc
Confidence 36778999999998777999999999999998743111100 011111 111111101 1122357
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeee
Q 000707 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 257 ~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
.+++++.+|..|+++++||+++||+.. |..+.++. .+.+|+.++-+...|.+|++++.||++.|||..+|++...+.
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~ 315 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE 315 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee
Confidence 888999999999999999999999977 45555554 456889999999999999999999999999999887544331
Q ss_pred cccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEE
Q 000707 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1341)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lW 416 (1341)
.++ .+. +|+++. + ...+++.+.||.|++.
T Consensus 316 -~~s-------------------~~~---------------------lDVdW~--------~--~~~F~ts~td~~i~V~ 344 (524)
T KOG0273|consen 316 -FHS-------------------APA---------------------LDVDWQ--------S--NDEFATSSTDGCIHVC 344 (524)
T ss_pred -ecc-------------------CCc---------------------cceEEe--------c--CceEeecCCCceEEEE
Confidence 000 000 111111 0 2488999999999998
Q ss_pred EccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeee
Q 000707 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1341)
Q Consensus 417 dl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1341)
.+.... | . +.
T Consensus 345 kv~~~~-------------------------P-~--------------------------------------------~t 354 (524)
T KOG0273|consen 345 KVGEDR-------------------------P-V--------------------------------------------KT 354 (524)
T ss_pred EecCCC-------------------------c-c--------------------------------------------ee
Confidence 764321 1 0 12
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
+.||.++|.+|.|.| .+.+|+++++|+|++||+...+.....|.+|+..|..+.|+|.+....-
T Consensus 355 ~~GH~g~V~alk~n~----------------tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n 418 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNP----------------TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSN 418 (524)
T ss_pred eecccCceEEEEECC----------------CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCC
Confidence 345899999999998 5899999999999999999988899999999999999999987532211
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC--
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL-- 654 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~-- 654 (1341)
...+....+.+.+++|++||+..|. ++.++.+ |..||.+++|||+|+|+|+|+.|+.|.||+. +++++++++..
T Consensus 419 ~~~~~~l~sas~dstV~lwdv~~gv--~i~~f~k-H~~pVysvafS~~g~ylAsGs~dg~V~iws~-~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 419 PNMNLMLASASFDSTVKLWDVESGV--PIHTLMK-HQEPVYSVAFSPNGRYLASGSLDGCVHIWST-KTGKLVKSYQGTG 494 (524)
T ss_pred CcCCceEEEeecCCeEEEEEccCCc--eeEeecc-CCCceEEEEecCCCcEEEecCCCCeeEeccc-cchheeEeecCCC
Confidence 1111111122345699999999998 7777766 8899999999999999999999999999999 89999998873
Q ss_pred ceEEEEEc
Q 000707 655 PFTVLEWT 662 (1341)
Q Consensus 655 ~v~~l~ws 662 (1341)
.+..+.|+
T Consensus 495 ~Ifel~Wn 502 (524)
T KOG0273|consen 495 GIFELCWN 502 (524)
T ss_pred eEEEEEEc
Confidence 45778897
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.5e-28 Score=265.94 Aligned_cols=267 Identities=21% Similarity=0.292 Sum_probs=212.3
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCC
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~ 580 (1341)
+..|+|+.+. ...+++|..|.||+|||..+-.+.+.|.||++.|.++.|..- .++|
T Consensus 197 skgVYClQYD------------------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-viis----- 252 (499)
T KOG0281|consen 197 SKGVYCLQYD------------------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-VIVS----- 252 (499)
T ss_pred CCceEEEEec------------------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-EEEe-----
Confidence 5678998864 357889999999999999999999999999999999998442 3343
Q ss_pred cccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCce---eeeccC---
Q 000707 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM---LRSLAL--- 654 (1341)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~---l~~l~~--- 654 (1341)
|+.|.+|+|||+.||+ ++.++-+ |...|..++|+. .|++++++|.++.|||+ ..+.- .+.+-+
T Consensus 253 -----GSSDsTvrvWDv~tge--~l~tlih-HceaVLhlrf~n--g~mvtcSkDrsiaVWdm-~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 253 -----GSSDSTVRVWDVNTGE--PLNTLIH-HCEAVLHLRFSN--GYMVTCSKDRSIAVWDM-ASPTDITLRRVLVGHRA 321 (499)
T ss_pred -----cCCCceEEEEeccCCc--hhhHHhh-hcceeEEEEEeC--CEEEEecCCceeEEEec-cCchHHHHHHHHhhhhh
Confidence 4445699999999999 7777655 888999999985 59999999999999999 45432 222221
Q ss_pred ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe
Q 000707 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1341)
Q Consensus 655 ~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv 734 (1341)
.|+.+.|+ ...+++++.|.+|++|++
T Consensus 322 aVNvVdfd------------------------------------------------------~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 322 AVNVVDFD------------------------------------------------------DKYIVSASGDRTIKVWST 347 (499)
T ss_pred heeeeccc------------------------------------------------------cceEEEecCCceEEEEec
Confidence 23444332 246789999999999999
Q ss_pred cC-CeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCC
Q 000707 735 HG-RRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSR 812 (1341)
Q Consensus 735 ~~-~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~ 812 (1341)
.. ..++. +.||..-|.|+.+.|+++++|++|.+||+||+..|. ++.+.||+.-|++|+|..
T Consensus 348 st~efvRt---------l~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~-------- 410 (499)
T KOG0281|consen 348 STCEFVRT---------LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN-------- 410 (499)
T ss_pred cceeeehh---------hhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC--------
Confidence 64 34443 236888899999999999999999999999999999 678899999999999953
Q ss_pred CEEEEEECCCeEEEEECCCCCc--------cccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 813 GRIAVLFHDNTFSVFDLDSQDP--------LANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 813 ~~Las~s~DgtI~IWDl~~~~~--------l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
++|++|++||+|+|||+.++.. +..++ ..| .+.|..+.|..- .+++++.|.+|-+||...+
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l-v~h--sgRVFrLQFD~f--------qIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL-VEH--SGRVFRLQFDEF--------QIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceeeeccccceEEEEecccccCCcccccchHHHhh-hhc--cceeEEEeecce--------EEEeccCCCeEEEEEcCCC
Confidence 5899999999999999987642 11222 233 368999999532 6889999999999998765
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.96 E-value=1.9e-26 Score=246.60 Aligned_cols=290 Identities=16% Similarity=0.153 Sum_probs=243.7
Q ss_pred ccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 15 NFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 15 ~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
.++|-| |-..+.+++|++|. .|++++ ++.+.|||.-+....+.++.+.. .|-.++|+|.
T Consensus 48 rr~LkG--H~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-----------WVMtCA~sPS------ 108 (343)
T KOG0286|consen 48 RRTLKG--HLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-----------WVMTCAYSPS------ 108 (343)
T ss_pred EEEecc--cccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCce-----------eEEEEEECCC------
Confidence 378888 55568999999998 788886 57899999999999999999987 9999999975
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCC----eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCC
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDFRLR----SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS 168 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv~tg----~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t 168 (1341)
|.++|.|+-|...-|+++.+. .....-++.+|++ -+.++.|.+| ..|+++++|.+..+||+++
T Consensus 109 --------g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-ylScC~f~dD----~~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 109 --------GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-YLSCCRFLDD----NHILTGSGDMTCALWDIET 175 (343)
T ss_pred --------CCeEEecCcCceeEEEecccccccccceeeeeecCccc-eeEEEEEcCC----CceEecCCCceEEEEEccc
Confidence 689999999999999999754 2222223689999 7999999885 4678899999999999999
Q ss_pred CeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000707 169 ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1341)
Q Consensus 169 g~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1341)
|..+..+.+|.+.|.+++++|.+++.+++++.|..-++||++.... .+.
T Consensus 176 g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c----~qt--------------------------- 224 (343)
T KOG0286|consen 176 GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC----VQT--------------------------- 224 (343)
T ss_pred ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce----eEe---------------------------
Confidence 9999999999999999999999999999999999999999754211 111
Q ss_pred CCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 249 SGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 249 ~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
..++..+|.+++|.|+|--+++++.|++.++||+...+.+..+..+.--.++.+|+|+..|++|++|-.|.++-+||.-.
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc
Confidence 12355678999999999999999999999999999999888876554456889999999999999999999999999877
Q ss_pred CceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEE
Q 000707 329 GEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISIS 408 (1341)
Q Consensus 329 g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s 408 (1341)
++.+..+.++|. +|.-+.++|+ |..++++|
T Consensus 305 ~e~vg~L~GHeN------------RvScl~~s~D--------------------------------------G~av~TgS 334 (343)
T KOG0286|consen 305 GERVGVLAGHEN------------RVSCLGVSPD--------------------------------------GMAVATGS 334 (343)
T ss_pred cceEEEeeccCC------------eeEEEEECCC--------------------------------------CcEEEecc
Confidence 887666644333 5555555543 67999999
Q ss_pred cCCeEEEEE
Q 000707 409 DDGKVWNWL 417 (1341)
Q Consensus 409 ~DG~I~lWd 417 (1341)
-|..|++|.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999993
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.2e-24 Score=243.95 Aligned_cols=526 Identities=15% Similarity=0.150 Sum_probs=341.7
Q ss_pred CCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 27 FGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 27 ~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
.+.+-|-|.|-+.|-.-+.+++++.+... .+.+.||+. .|.++..+|+ --++|+
T Consensus 68 R~Nly~lptgE~vyfvA~V~Vl~n~ee~~-Qr~y~GH~d-----------dikc~~vHPd--------------ri~vat 121 (626)
T KOG2106|consen 68 RNNLYLLPTGELVYFVAAVGVLYNWEERS-QRHYLGHND-----------DIKCMAVHPD--------------RIRVAT 121 (626)
T ss_pred eceeEEccCccEEEEeccEEEEEeehhhh-cccccCCCC-----------ceEEEeecCC--------------ceeecc
Confidence 45677889997777666778888876522 234679998 9999999986 367888
Q ss_pred EeCCC--------cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEE--eCCCeEEEEECCCCeEEEEEe
Q 000707 107 ADRHG--------RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI--NGPSVLSLYNTTSASCMWKYD 176 (1341)
Q Consensus 107 g~~dG--------~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~--s~d~~i~lWd~~tg~~i~~~~ 176 (1341)
|...| .|+|||..+-..+..+. .... +|.+++|++...+ .+|+.. +.+..+.+||...+.......
T Consensus 122 GQ~ag~~g~~~~phvriWdsv~L~TL~V~g--~f~~-GV~~vaFsk~~~G-~~l~~vD~s~~h~lSVWdWqk~~~~~~vk 197 (626)
T KOG2106|consen 122 GQGAGTSGRPLQPHVRIWDSVTLSTLHVIG--FFDR-GVTCVAFSKINGG-SLLCAVDDSNPHMLSVWDWQKKAKLGPVK 197 (626)
T ss_pred CcccccCCCcCCCeeeecccccceeeeeec--cccc-cceeeeecccCCC-ceEEEecCCCccccchhhchhhhccCcce
Confidence 87766 49999988777777763 2334 8999999997643 666665 456789999999887776666
Q ss_pred CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000707 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1341)
Q Consensus 177 ~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1341)
...+.|....|.|-|+..++++|. |-+.+|+..+.+- .|+-.| +++ . ...+|
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l----~k~~~~---------fek-------------~-ekk~V 249 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSL----VKRQGI---------FEK-------------R-EKKFV 249 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCce----EEEeec---------ccc-------------c-cceEE
Confidence 667889999999999999998885 8899998765321 222111 111 0 11368
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeee
Q 000707 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 257 ~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
++++|.++| .++++-.+|.|.||+..+.+...... -+...+..+..-.+|.+| ||+.|.+|.+||-. ...++
T Consensus 250 l~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~--aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r--- 321 (626)
T KOG2106|consen 250 LCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVH--AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLR--- 321 (626)
T ss_pred EEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEee--ecCCceEEEEEecCccEe-ecCccceEEecccc-ccccc---
Confidence 999999998 57899999999999998777655544 344566666666788755 59999999999821 11111
Q ss_pred cccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEE
Q 000707 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1341)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lW 416 (1341)
+..+|-.. + .+-.++ +++.-|..+..-+.|..
T Consensus 322 --~~elPe~~----G-~iRtv~----------------------------------------e~~~di~vGTtrN~iL~- 353 (626)
T KOG2106|consen 322 --ETELPEQF----G-PIRTVA----------------------------------------EGKGDILVGTTRNFILQ- 353 (626)
T ss_pred --cccCchhc----C-CeeEEe----------------------------------------cCCCcEEEeeccceEEE-
Confidence 11111000 0 000000 00111222211111110
Q ss_pred EccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeee
Q 000707 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1341)
Q Consensus 417 dl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1341)
|. .+-.|.++
T Consensus 354 -----------------------------Gt---------------------------------------~~~~f~~~-- 363 (626)
T KOG2106|consen 354 -----------------------------GT---------------------------------------LENGFTLT-- 363 (626)
T ss_pred -----------------------------ee---------------------------------------ecCCceEE--
Confidence 00 00001222
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
.+||......++.+| ...++++.+.|++++||+ ..+++-+.. -..++.++.|.|.| .++.
T Consensus 364 v~gh~delwgla~hp----------------s~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 364 VQGHGDELWGLATHP----------------SKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAV 423 (626)
T ss_pred EEecccceeeEEcCC----------------ChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEE
Confidence 346778888899888 467899999999999999 334432221 23678899999988 4433
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--- 653 (1341)
+. ..+...|.|.++.....+ +. +..++++++|+|+|.+||+|+.|+.|.||-+.+.+..+....
T Consensus 424 Gt---------~~G~w~V~d~e~~~lv~~---~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~ 490 (626)
T KOG2106|consen 424 GT---------ATGRWFVLDTETQDLVTI---HT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS 490 (626)
T ss_pred ee---------ccceEEEEecccceeEEE---Ee-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec
Confidence 32 234778888887552233 33 467999999999999999999999999999865665544332
Q ss_pred -CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEE
Q 000707 654 -LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1341)
Q Consensus 654 -~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vw 732 (1341)
.+++.+.||+++.. +.+-+.|-.|-.|
T Consensus 491 gs~ithLDwS~Ds~~----------------------------------------------------~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 491 GSPITHLDWSSDSQF----------------------------------------------------LVSNSGDYEILYW 518 (626)
T ss_pred CceeEEeeecCCCce----------------------------------------------------EEeccCceEEEEE
Confidence 46789999977422 1122222222223
Q ss_pred Eec----CCeeecccCCCCC-------Cccc---cccceEEEEeecCCEEEEEeCCCcEEEEECCCCc----eeeeccCC
Q 000707 733 EVH----GRRIRDFRPKWPS-------SSFI---SSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHR 794 (1341)
Q Consensus 733 dv~----~~~v~~~~~~~~~-------~~l~---~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~----~~~l~gH~ 794 (1341)
... ...++|+ +|.. ..|- +.+..+++.+-+.++||+|+..|+|++|...--+ .+.+.+|.
T Consensus 519 ~~~~~~~~ts~kDv--kW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs 596 (626)
T KOG2106|consen 519 KPSECKQITSVKDV--KWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHS 596 (626)
T ss_pred ccccCcccceecce--eeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeecccc
Confidence 110 0001110 0000 0000 1112223333478899999999999999885432 56789999
Q ss_pred CcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEEC
Q 000707 795 EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1341)
Q Consensus 795 ~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl 829 (1341)
+-|.+|+|+-+ . +.+++.+.|.+|..|++
T Consensus 597 ~~vt~V~Fl~~--d----~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 SHVTNVAFLCK--D----SHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceeEEEEEeeC--C----ceEEecCCCceEEEEEe
Confidence 99999999976 2 56777779999999986
No 33
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-24 Score=254.51 Aligned_cols=556 Identities=16% Similarity=0.196 Sum_probs=369.2
Q ss_pred eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEE
Q 000707 37 LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL 116 (1341)
Q Consensus 37 llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vW 116 (1341)
++.++-|++..++|.+...++.+=+.++. .|+|++=..+ +..+|. ...|.+|
T Consensus 49 ~vtt~vgksfqvYd~~kl~ll~vs~~lp~-----------~I~alas~~~----------------~vy~A~-g~~i~~~ 100 (910)
T KOG1539|consen 49 YVTTCVGKSFQVYDVNKLNLLFVSKPLPD-----------KITALASDKD----------------YVYVAS-GNKIYAY 100 (910)
T ss_pred EEEEecCceEEEEeccceEEEEecCCCCC-----------ceEEEEecCc----------------eEEEec-CcEEEEE
Confidence 45566789999999998888776555665 8999975432 233332 2356677
Q ss_pred eCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC-eE----EEEEeCCCCceEEEEEcCCC
Q 000707 117 DFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SC----MWKYDASPEYLSCIRRNPFD 191 (1341)
Q Consensus 117 Dv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~----i~~~~~~~~~v~~~~fsP~d 191 (1341)
.- |+.+.-+ ..+|.+ .|.-+.-. | ..|.++..++.+.+|+..++ +. +.-+....+.|+++ ++|..
T Consensus 101 ~r--gk~i~~~-~~~~~a-~v~~l~~f--G---e~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~T 170 (910)
T KOG1539|consen 101 AR--GKHIRHT-TLLHGA-KVHLLLPF--G---EHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPST 170 (910)
T ss_pred Ec--cceEEEE-eccccc-eEEEEeee--c---ceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchh
Confidence 64 4333222 345655 67766533 3 66788888999999999874 21 11122212225544 45521
Q ss_pred -CCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEE
Q 000707 192 -ARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIF 270 (1341)
Q Consensus 192 -~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~ 270 (1341)
-++++.++.+|.+.+|++... |.++. .. .+...|..+.-+|-=.-++.
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt~-------K~v~~---------f~---------------~~~s~IT~ieqsPaLDVVai 219 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRTG-------KVVYT---------FQ---------------EFFSRITAIEQSPALDVVAI 219 (910)
T ss_pred heeeEEEeecCCcEEEEEeccC-------cEEEE---------ec---------------ccccceeEeccCCcceEEEE
Confidence 267889999999999998652 22210 00 11223555566676667788
Q ss_pred EEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCC-EEEEEecCCcEEEEeccCCceeeeeecccccccccCccC
Q 000707 271 VTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSV 349 (1341)
Q Consensus 271 ~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~ 349 (1341)
+..+|+|.|++++.++.+.++..+. +.+.++.|.-||. .|+++...|.+.+||.......+.+...+. |
T Consensus 220 G~~~G~ViifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~-----~--- 289 (910)
T KOG1539|consen 220 GLENGTVIIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHY-----G--- 289 (910)
T ss_pred eccCceEEEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecccc-----C---
Confidence 8899999999999999999887543 5788888888887 788888999999999975543333311111 0
Q ss_pred CCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEcccccccccccc
Q 000707 350 PSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKD 429 (1341)
Q Consensus 350 ~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~ 429 (1341)
.+....+++. .-.+.+.+.|..+++|-..++.
T Consensus 290 ---sv~~~~fl~~--------------------------------------epVl~ta~~DnSlk~~vfD~~d------- 321 (910)
T KOG1539|consen 290 ---SVTGATFLPG--------------------------------------EPVLVTAGADNSLKVWVFDSGD------- 321 (910)
T ss_pred ---CcccceecCC--------------------------------------CceEeeccCCCceeEEEeeCCC-------
Confidence 2222233332 2377888999999998665431
Q ss_pred ccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEe
Q 000707 430 AIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAV 509 (1341)
Q Consensus 430 ~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~ 509 (1341)
|.| + +.-.-.||+.|.++|+|
T Consensus 322 ----------------g~p----------R---------------------------------~LR~R~GHs~Pp~~irf 342 (910)
T KOG1539|consen 322 ----------------GVP----------R---------------------------------LLRSRGGHSAPPSCIRF 342 (910)
T ss_pred ----------------Ccc----------h---------------------------------heeeccCCCCCchheee
Confidence 111 0 00012469999999999
Q ss_pred cCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-ecC-----------------CCeEEEEEcCC-
Q 000707 510 PSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFS-VHN-----------------GTVRGLRWLGN- 570 (1341)
Q Consensus 510 ~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~-~H~-----------------~~V~~l~fs~d- 570 (1341)
.-. .|..+.+++.|++.+.+++.....-+++. .|. .+|..+++...
T Consensus 343 y~~---------------~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R 407 (910)
T KOG1539|consen 343 YGS---------------QGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR 407 (910)
T ss_pred ecc---------------CcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccch
Confidence 752 58899999999999999985332211111 111 12333333211
Q ss_pred ----CcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEecc----CCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 571 ----SRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQK----PERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 571 ----~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~----~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
..++++-.+ +-.++.|+.+....-... +.. +....+++++.|+-|++.++|+..|+|.++++
T Consensus 408 E~~W~Nv~~~h~~---------~~~~~tW~~~n~~~G~~~-L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 408 EKEWDNVITAHKG---------KRSAYTWNFRNKTSGRHV-LDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred hhhhcceeEEecC---------cceEEEEeccCcccccEE-ecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEc
Confidence 122222221 235778998653321111 111 14467899999999999999999999999999
Q ss_pred cCCCceeeecc------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCC
Q 000707 643 TKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDT 716 (1341)
Q Consensus 643 ~~t~~~l~~l~------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~ 716 (1341)
++|....++. .+|++++- +..
T Consensus 478 -QSGi~r~sf~~~~ah~~~V~gla~----------------------------------------------------D~~ 504 (910)
T KOG1539|consen 478 -QSGIHRKSFGDSPAHKGEVTGLAV----------------------------------------------------DGT 504 (910)
T ss_pred -ccCeeecccccCccccCceeEEEe----------------------------------------------------cCC
Confidence 7886555553 12333322 223
Q ss_pred CCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccC
Q 000707 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTH 793 (1341)
Q Consensus 717 ~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH 793 (1341)
+..+++++.+|-++.||..++.+.. .+.- + ..++++.+ ....+|.+..|=.|++.|+.|.+ .+.|.||
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~---~l~l----~--~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh 575 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKK---SLRL----G--SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGH 575 (910)
T ss_pred CceEEEccCcceEEEEecCCcceee---eecc----C--CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcc
Confidence 4668899999999999997655421 1111 1 23566666 56688999999999999999988 6899999
Q ss_pred CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECC
Q 000707 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGAD 873 (1341)
Q Consensus 794 ~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~D 873 (1341)
.+.|+.+.|||| | +.|++++.|++||+||+-++..+ -.+ ....+++.+.|+|. |+ +||++..|
T Consensus 576 ~nritd~~FS~D--g----rWlisasmD~tIr~wDlpt~~lI-D~~----~vd~~~~sls~SPn----gD--~LAT~Hvd 638 (910)
T KOG1539|consen 576 GNRITDMTFSPD--G----RWLISASMDSTIRTWDLPTGTLI-DGL----LVDSPCTSLSFSPN----GD--FLATVHVD 638 (910)
T ss_pred ccceeeeEeCCC--C----cEEEEeecCCcEEEEeccCccee-eeE----ecCCcceeeEECCC----CC--EEEEEEec
Confidence 999999999999 6 78999999999999999998733 222 12467899999998 66 89999999
Q ss_pred -CcEEEEEcc
Q 000707 874 -SSFRLIEVN 882 (1341)
Q Consensus 874 -gtIrvWdv~ 882 (1341)
.-|.+|.=.
T Consensus 639 ~~gIylWsNk 648 (910)
T KOG1539|consen 639 QNGIYLWSNK 648 (910)
T ss_pred CceEEEEEch
Confidence 779999643
No 34
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.2e-27 Score=264.59 Aligned_cols=298 Identities=14% Similarity=0.108 Sum_probs=229.4
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC-eEEEEecCCCC
Q 000707 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR-SVVLWIDPDPN 132 (1341)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg-~~~~~l~~~~h 132 (1341)
.+..++|..|+. .|.-++|||+ |++||||+.|.+++||++..- .......+.||
T Consensus 214 ~qt~qil~~htd-----------EVWfl~FS~n--------------GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh 268 (519)
T KOG0293|consen 214 SQTWQILQDHTD-----------EVWFLQFSHN--------------GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH 268 (519)
T ss_pred chhhhhHhhCCC-----------cEEEEEEcCC--------------CeeEeeccCCceEEEEEEecCcceeeeeeeecc
Confidence 455788999998 9999999975 689999999999999997543 32222235789
Q ss_pred CCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCC-CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~-~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
.. +|..+.||||+ ++|++|+.|..+++||+.||.+...+..+ ...+.|++|.| |+.++++|+.|+.+..||..|
T Consensus 269 ~~-~V~yi~wSPDd---ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 269 SQ-PVSYIMWSPDD---RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred cC-ceEEEEECCCC---CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc
Confidence 88 99999999987 89999999999999999999998877654 35788999999 999999999999999999765
Q ss_pred CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEE
Q 000707 212 QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSA 291 (1341)
Q Consensus 212 ~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~ 291 (1341)
.. ... |.+. . . -.+..++.++||+.+++...|..|++++.++...++.+
T Consensus 344 n~-----~~~----------------W~gv--------r-~-~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li 392 (519)
T KOG0293|consen 344 NI-----LGN----------------WEGV--------R-D-PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI 392 (519)
T ss_pred ch-----hhc----------------cccc--------c-c-ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc
Confidence 31 111 2110 0 0 12667899999999999999999999999988777655
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhh
Q 000707 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAK 371 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k 371 (1341)
..+ .++.++..+.||+++..--.+..|.+||.++...+..+-|+.. | .++..
T Consensus 393 se~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq-----~--------~fiIr------------ 444 (519)
T KOG0293|consen 393 SEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQ-----G--------HFIIR------------ 444 (519)
T ss_pred ccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccc-----c--------ceEEE------------
Confidence 433 6788888899999988888999999999986544433311110 0 01111
Q ss_pred cccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCccccc
Q 000707 372 LCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNS 451 (1341)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~ 451 (1341)
+.|+- .+.+.+||||+|++|.+|+..+++.+
T Consensus 445 ----------------SCFgg------~~~~fiaSGSED~kvyIWhr~sgkll--------------------------- 475 (519)
T KOG0293|consen 445 ----------------SCFGG------GNDKFIASGSEDSKVYIWHRISGKLL--------------------------- 475 (519)
T ss_pred ----------------eccCC------CCcceEEecCCCceEEEEEccCCcee---------------------------
Confidence 01111 12468999999999999998765321
Q ss_pred CcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCE
Q 000707 452 MASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPL 531 (1341)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~l 531 (1341)
..|.||+..|.+|++.|. +-..
T Consensus 476 -------------------------------------------~~LsGHs~~vNcVswNP~---------------~p~m 497 (519)
T KOG0293|consen 476 -------------------------------------------AVLSGHSKTVNCVSWNPA---------------DPEM 497 (519)
T ss_pred -------------------------------------------EeecCCcceeeEEecCCC---------------CHHH
Confidence 135679999999999992 4578
Q ss_pred EEEEeCCCcEEEEeCC
Q 000707 532 VALGTQSGAVDVVDVS 547 (1341)
Q Consensus 532 lAsGs~DGtI~lWDl~ 547 (1341)
+|+|++|||||||-..
T Consensus 498 ~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 498 FASASDDGTIRIWGPS 513 (519)
T ss_pred hhccCCCCeEEEecCC
Confidence 9999999999999875
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.1e-25 Score=247.24 Aligned_cols=343 Identities=15% Similarity=0.093 Sum_probs=253.9
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000707 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1341)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~ 135 (1341)
.+.+|..|++ .|.+|+.+|+ -+++|+|+.|....|||..+|..... +.+|..
T Consensus 56 S~~tF~~H~~-----------svFavsl~P~--------------~~l~aTGGgDD~AflW~~~~ge~~~e--ltgHKD- 107 (399)
T KOG0296|consen 56 SLVTFDKHTD-----------SVFAVSLHPN--------------NNLVATGGGDDLAFLWDISTGEFAGE--LTGHKD- 107 (399)
T ss_pred ceeehhhcCC-----------ceEEEEeCCC--------------CceEEecCCCceEEEEEccCCcceeE--ecCCCC-
Confidence 3568999999 8999999984 47899999999999999999997776 589988
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~ 215 (1341)
.|.++.|+.++ .+||+++-+|.|+||.+.+|...|++....+.+.-+.|+| .+..|++++.||.+..|.+..+
T Consensus 108 SVt~~~Fshdg---tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~--- 180 (399)
T KOG0296|consen 108 SVTCCSFSHDG---TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQ--- 180 (399)
T ss_pred ceEEEEEccCc---eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCc---
Confidence 99999999987 8999999999999999999999999987677888999999 9999999999999999975321
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCC
Q 000707 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1341)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1341)
...|-+. + +...|..=.|.|||++++++..|++|++||+++++++.++....
T Consensus 181 -~~~kv~~------------G---------------h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e 232 (399)
T KOG0296|consen 181 -ALCKVMS------------G---------------HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE 232 (399)
T ss_pred -ceeeEec------------C---------------CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc
Confidence 1111111 1 11224434899999999999999999999999999998876322
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccC
Q 000707 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1341)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~ 375 (1341)
+ ...--+....++..++.+..++.+.+-+..+|+-+...-+ . .| .+..-.-..++++
T Consensus 233 ~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~--~-~~---------~l~~~~e~~~esv---------- 289 (399)
T KOG0296|consen 233 G-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG--T-VP---------ELKPSQEELDESV---------- 289 (399)
T ss_pred c-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC--C-Cc---------cccccchhhhhhh----------
Confidence 1 1111233456788899999999998888777762221100 0 01 0000000011100
Q ss_pred CCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCc
Q 000707 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASS 455 (1341)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~ 455 (1341)
... |.+..-...|.++.||+|.+||+.......
T Consensus 290 -e~~----------------~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~------------------------------ 322 (399)
T KOG0296|consen 290 -ESI----------------PSSSKLPLAACGSVDGTIAIYDLAASTLRH------------------------------ 322 (399)
T ss_pred -hhc----------------ccccccchhhcccccceEEEEecccchhhe------------------------------
Confidence 000 000012367889999999999987543100
Q ss_pred ccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEE
Q 000707 456 ADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALG 535 (1341)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsG 535 (1341)
.--|..+|+.+.|-+ .+.|+++
T Consensus 323 -----------------------------------------~c~he~~V~~l~w~~-----------------t~~l~t~ 344 (399)
T KOG0296|consen 323 -----------------------------------------ICEHEDGVTKLKWLN-----------------TDYLLTA 344 (399)
T ss_pred -----------------------------------------eccCCCceEEEEEcC-----------------cchheee
Confidence 001567789999876 3688999
Q ss_pred eCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEcc
Q 000707 536 TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR 598 (1341)
Q Consensus 536 s~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~ 598 (1341)
+.||+|++||..+|++..++.||...|.+++.+++.+++.. ++.||+.+|+++.
T Consensus 345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT---------~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVT---------VSDDNTALVFEVP 398 (399)
T ss_pred ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEE---------ecCCCeEEEEecC
Confidence 99999999999999999999999999999999999876642 2335688888763
No 36
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=264.65 Aligned_cols=279 Identities=15% Similarity=0.253 Sum_probs=223.7
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCC
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQ 580 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~ 580 (1341)
..+|..|.|.| +|+.|++|+..|.+-+|+..+-.....++.|..+|+++.|++++..+.
T Consensus 96 kc~V~~v~WtP----------------eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmi----- 154 (464)
T KOG0284|consen 96 KCPVNVVRWTP----------------EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMI----- 154 (464)
T ss_pred ccceeeEEEcC----------------CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEE-----
Confidence 45788999998 689999999999999999855444455689999999999999986553
Q ss_pred cccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC---ceE
Q 000707 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFT 657 (1341)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~---~v~ 657 (1341)
+|..++.|++|+..-.. +...+.+|...|++++|||....+++++.|++|+|||. ..++.-+.+.+ .+.
T Consensus 155 ----SgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf-~~~kee~vL~GHgwdVk 226 (464)
T KOG0284|consen 155 ----SGDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF-RMPKEERVLRGHGWDVK 226 (464)
T ss_pred ----EcCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec-cCCchhheeccCCCCcc
Confidence 22334689999986443 22335557689999999999999999999999999998 45544333432 367
Q ss_pred EEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecC-
Q 000707 658 VLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG- 736 (1341)
Q Consensus 658 ~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~- 736 (1341)
++.|+|. ...+|+++.|+.|++||.+.
T Consensus 227 svdWHP~----------------------------------------------------kgLiasgskDnlVKlWDprSg 254 (464)
T KOG0284|consen 227 SVDWHPT----------------------------------------------------KGLIASGSKDNLVKLWDPRSG 254 (464)
T ss_pred eeccCCc----------------------------------------------------cceeEEccCCceeEeecCCCc
Confidence 8899864 24578999999999999954
Q ss_pred CeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCC
Q 000707 737 RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRG 813 (1341)
Q Consensus 737 ~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~ 813 (1341)
..+-. +-+|...|..+.| ++++|+++|.|.+++++|+++-+ +..+.+|+..|++++|+|-.+ +
T Consensus 255 ~cl~t---------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~-----~ 320 (464)
T KOG0284|consen 255 SCLAT---------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNE-----S 320 (464)
T ss_pred chhhh---------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccc-----c
Confidence 44421 2367788999999 88999999999999999999654 888999999999999999855 5
Q ss_pred EEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 814 RIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 814 ~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.+.+++.||.|..|.+...+++.. .++.+...|++++|+|. |. +||+|+.|.++|+|.-..
T Consensus 321 lftsgg~Dgsvvh~~v~~~~p~~~---i~~AHd~~iwsl~~hPl----Gh--il~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLEEPLGE---IPPAHDGEIWSLAYHPL----GH--ILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ceeeccCCCceEEEeccccccccC---CCcccccceeeeecccc----ce--eEeecCCCcceeeeccCC
Confidence 788999999999999986666532 23344478999999998 55 799999999999997643
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.95 E-value=4.2e-27 Score=280.39 Aligned_cols=267 Identities=20% Similarity=0.270 Sum_probs=208.9
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCc
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~ 581 (1341)
..++|..|++ ++.++|.|..|..|++|.+...++ +.+ .+-++...-.
T Consensus 379 ~~v~ca~fSd----------------dssmlA~Gf~dS~i~~~Sl~p~kl-~~l-------k~~~~l~~~d--------- 425 (707)
T KOG0263|consen 379 QGVTCAEFSD----------------DSSMLACGFVDSSVRVWSLTPKKL-KKL-------KDASDLSNID--------- 425 (707)
T ss_pred CcceeEeecC----------------CcchhhccccccEEEEEecchhhh-ccc-------cchhhhcccc---------
Confidence 4688888887 678999999999999999975433 222 2222211100
Q ss_pred ccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC---ceEE
Q 000707 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTV 658 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~---~v~~ 658 (1341)
.+..|..+.+-|-.++. ..+.+.| |.+||..++|+|+.+||+++|.|+++|+|.+ .+..++-.+++ ||..
T Consensus 426 ---~~sad~~~~~~D~~~~~--~~~~L~G-H~GPVyg~sFsPd~rfLlScSED~svRLWsl-~t~s~~V~y~GH~~PVwd 498 (707)
T KOG0263|consen 426 ---TESADVDVDMLDDDSSG--TSRTLYG-HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-DTWSCLVIYKGHLAPVWD 498 (707)
T ss_pred ---ccccchhhhhccccCCc--eeEEeec-CCCceeeeeecccccceeeccCCcceeeeec-ccceeEEEecCCCcceee
Confidence 11112234455554443 3445666 8999999999999999999999999999999 68777665553 4555
Q ss_pred EEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCe
Q 000707 659 LEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR 738 (1341)
Q Consensus 659 l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~ 738 (1341)
+.|+|- +-.||+++.|++-++|..+...
T Consensus 499 V~F~P~----------------------------------------------------GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 499 VQFAPR----------------------------------------------------GYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred EEecCC----------------------------------------------------ceEEEecCCCceeeeeecccCC
Confidence 666642 4578999999999999986432
Q ss_pred eecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEE
Q 000707 739 IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRI 815 (1341)
Q Consensus 739 v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~L 815 (1341)
. ...|.||.+.|.|++| +..++++||.|.++|+||+.+|. .+-|.||+++|.+|+|||+ | .+|
T Consensus 527 P--------lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~--G----r~L 592 (707)
T KOG0263|consen 527 P--------LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPC--G----RYL 592 (707)
T ss_pred c--------hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCC--C----ceE
Confidence 1 2235689999999999 78899999999999999999998 6889999999999999998 6 789
Q ss_pred EEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 816 AVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 816 as~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
|+|+.||.|+|||+.++..+ ..+ .+|. +.|.++.|+.+ |. +||+||.|++|++||+...
T Consensus 593 aSg~ed~~I~iWDl~~~~~v-~~l-~~Ht--~ti~SlsFS~d----g~--vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 593 ASGDEDGLIKIWDLANGSLV-KQL-KGHT--GTIYSLSFSRD----GN--VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred eecccCCcEEEEEcCCCcch-hhh-hccc--CceeEEEEecC----CC--EEEecCCCCeEEEEEchhh
Confidence 99999999999999999844 444 6885 67999999998 55 7999999999999998753
No 38
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=246.18 Aligned_cols=338 Identities=14% Similarity=0.170 Sum_probs=251.3
Q ss_pred CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 129 PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 129 ~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
+..|+. +|.+++.+|+. .++|++++|..-.||+..+|..+..+++|.+.|+|+.|+. |+..||+++.+|.|++|+
T Consensus 60 F~~H~~-svFavsl~P~~---~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 60 FDKHTD-SVFAVSLHPNN---NLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred hhhcCC-ceEEEEeCCCC---ceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEE
Confidence 478988 99999999955 8999999999999999999999899999999999999997 999999999999999998
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCcee
Q 000707 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL 288 (1341)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l 288 (1341)
.+.+.. ++.+. . .. ..+.=+.++|-+..+++++.|+.+.+|.+..+...
T Consensus 135 ~stg~~------~~~~~------~-----------------e~--~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~ 183 (399)
T KOG0296|consen 135 VSTGGE------QWKLD------Q-----------------EV--EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC 183 (399)
T ss_pred cccCce------EEEee------c-----------------cc--CceEEEEecccccEEEeecCCCcEEEEECCCccee
Confidence 765321 11110 0 00 12444689999999999999999999999987555
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhh
Q 000707 289 FSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQN 368 (1341)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~ 368 (1341)
..+.. +..+...=-+.|||+.++++..||+|++|+.++|.+++.+.+.|. ++ .|
T Consensus 184 kv~~G--h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~----------------~~------- 237 (399)
T KOG0296|consen 184 KVMSG--HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG-LE----------------LP------- 237 (399)
T ss_pred eEecC--CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc-Cc----------------CC-------
Confidence 66653 345554445679999999999999999999999998887743222 11 00
Q ss_pred hhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcc
Q 000707 369 VAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTN 448 (1341)
Q Consensus 369 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~ 448 (1341)
+. .++..+.++..++.+|.+.+=...+++....+ .|..
T Consensus 238 --------------------~~-----~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~-----------------n~~~ 275 (399)
T KOG0296|consen 238 --------------------CI-----SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCN-----------------NGTV 275 (399)
T ss_pred --------------------cc-----ccccccceeEeccCCccEEEEccccceEEEec-----------------CCCC
Confidence 01 12233668889999999887766655432210 0000
Q ss_pred cccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCC
Q 000707 449 TNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVA 528 (1341)
Q Consensus 449 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~ 528 (1341)
..++ .++...+-+|.+.|- . ..
T Consensus 276 --------------------------------------~~l~-------~~~e~~~esve~~~~--s-----------s~ 297 (399)
T KOG0296|consen 276 --------------------------------------PELK-------PSQEELDESVESIPS--S-----------SK 297 (399)
T ss_pred --------------------------------------cccc-------ccchhhhhhhhhccc--c-----------cc
Confidence 0000 012233344444441 1 14
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
-++.|+|+.||+|.|||+.+.++.+ .-.|..+|..+.|.+...++++.. ++.|+.||.|+|+ .+.+.
T Consensus 298 lpL~A~G~vdG~i~iyD~a~~~~R~-~c~he~~V~~l~w~~t~~l~t~c~----------~g~v~~wDaRtG~--l~~~y 364 (399)
T KOG0296|consen 298 LPLAACGSVDGTIAIYDLAASTLRH-ICEHEDGVTKLKWLNTDYLLTACA----------NGKVRQWDARTGQ--LKFTY 364 (399)
T ss_pred cchhhcccccceEEEEecccchhhe-eccCCCceEEEEEcCcchheeecc----------CceEEeeeccccc--eEEEE
Confidence 6899999999999999998766544 446889999999998444444332 4589999999998 55566
Q ss_pred ccCCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 609 QKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
.| |..+|.+++++|++++++++|.|++.+|+++
T Consensus 365 ~G-H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 365 TG-HQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ec-CchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 67 8899999999999999999999999999986
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.95 E-value=2.5e-26 Score=250.45 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=230.5
Q ss_pred cceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEE
Q 000707 487 MSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLR 566 (1341)
Q Consensus 487 ~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~ 566 (1341)
-+..+.+...++||.+.|.||++.| +..++++|+.|++|+|||+++|++..++.||-..|++++
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP----------------~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~va 200 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDP----------------GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVA 200 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCC----------------CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeee
Confidence 3445667778899999999999999 468999999999999999999999999999999999999
Q ss_pred EcCCCcEE-EEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCC
Q 000707 567 WLGNSRLV-SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKN 645 (1341)
Q Consensus 567 fs~d~~ll-S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t 645 (1341)
+++-..++ |++ .|..|+.||++..+ .+|...| |-+.|.+++.+|.-+.|++|++|.++||||+ ++
T Consensus 201 vS~rHpYlFs~g----------edk~VKCwDLe~nk--vIR~YhG-HlS~V~~L~lhPTldvl~t~grDst~RvWDi-Rt 266 (460)
T KOG0285|consen 201 VSKRHPYLFSAG----------EDKQVKCWDLEYNK--VIRHYHG-HLSGVYCLDLHPTLDVLVTGGRDSTIRVWDI-RT 266 (460)
T ss_pred ecccCceEEEec----------CCCeeEEEechhhh--hHHHhcc-ccceeEEEeccccceeEEecCCcceEEEeee-cc
Confidence 99876544 333 34589999999877 7777667 8899999999999999999999999999999 78
Q ss_pred CceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE
Q 000707 646 PIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1341)
Q Consensus 646 ~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~ 722 (1341)
...+..+.+ +|+.+.+.| ...++++
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~----------------------------------------------------~dpqvit 294 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQP----------------------------------------------------TDPQVIT 294 (460)
T ss_pred cceEEEecCCCCcceeEEeec----------------------------------------------------CCCceEE
Confidence 777777663 454444432 1235789
Q ss_pred EecCCcEEEEEec-CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEE
Q 000707 723 ALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIR 798 (1341)
Q Consensus 723 ~~~Dg~I~vwdv~-~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~ 798 (1341)
++.|++|++||+. |+.... ++.|...|.+++. +-..+|+++.| +|+.|++..|. +..+.+|.+-|.
T Consensus 295 ~S~D~tvrlWDl~agkt~~t---------lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iin 364 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMIT---------LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIIN 364 (460)
T ss_pred ecCCceEEEeeeccCceeEe---------eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceee
Confidence 9999999999995 443321 3367777888887 45577888776 59999999998 677999999999
Q ss_pred EEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccc--cccccCCC--CCCcEEEEEEcCCCCCCCCCeEEEEEECCC
Q 000707 799 RIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA--NSLLQPQF--PGTLVLELDWLPTRTDKNDPLVLCIAGADS 874 (1341)
Q Consensus 799 ~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~--~~l~~gh~--~~~~V~~l~ws~~~~~~g~~~~Las~s~Dg 874 (1341)
+++...| +.+++|++.|++..||-+++-... .+..++-. ....|+...|... +. .|++|..|.
T Consensus 365 tl~~nsD-------~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt----g~--rlit~eadK 431 (460)
T KOG0285|consen 365 TLSVNSD-------GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT----GS--RLITGEADK 431 (460)
T ss_pred eeeeccC-------ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc----Cc--eEEeccCCc
Confidence 9998877 689999999999999999874211 11111100 1134677777654 33 688999999
Q ss_pred cEEEEEccC
Q 000707 875 SFRLIEVNT 883 (1341)
Q Consensus 875 tIrvWdv~~ 883 (1341)
+|++|.-..
T Consensus 432 tIk~~keDe 440 (460)
T KOG0285|consen 432 TIKMYKEDE 440 (460)
T ss_pred ceEEEeccc
Confidence 999998654
No 40
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.7e-23 Score=245.04 Aligned_cols=502 Identities=13% Similarity=0.154 Sum_probs=327.5
Q ss_pred CCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCc
Q 000707 70 SVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS 149 (1341)
Q Consensus 70 ~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~ 149 (1341)
|+++..+.|+++||+.+. ..||.+-.||.|.||+++.+.....+ +.|+....|.+|||++.
T Consensus 20 f~d~~Ps~I~slA~s~kS--------------~~lAvsRt~g~IEiwN~~~~w~~~~v-i~g~~drsIE~L~W~e~---- 80 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKS--------------NQLAVSRTDGNIEIWNLSNNWFLEPV-IHGPEDRSIESLAWAEG---- 80 (691)
T ss_pred EEeeeccceEEEEEeccC--------------CceeeeccCCcEEEEccCCCceeeEE-EecCCCCceeeEEEccC----
Confidence 566777799999999874 56999999999999999987655443 56676669999999954
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcc
Q 000707 150 FVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCT 229 (1341)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~ 229 (1341)
..|.|.+.+|.|.-||+.+++++..++...+.|++++.+| ....+++++.||.++.++..++. + .+..
T Consensus 81 ~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~---I---~~~r----- 148 (691)
T KOG2048|consen 81 GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDK---I---TYKR----- 148 (691)
T ss_pred CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCce---E---EEEe-----
Confidence 4688899999999999999999999988788999999999 78999999999966555432211 1 1110
Q ss_pred hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeE-----EEecCC-CccceEEE
Q 000707 230 ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLF-----SAALPR-GCAKFLDV 303 (1341)
Q Consensus 230 ~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~-----~~~l~~-~~~~~~~v 303 (1341)
.+.+ ..+.+++++|+|++..++.++.|+-|++||+.+++.+. ...+.+ ...-+++|
T Consensus 149 ~l~r------------------q~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 149 SLMR------------------QKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSV 210 (691)
T ss_pred eccc------------------ccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEE
Confidence 0111 12358899999999999999999999999999999876 223322 23346677
Q ss_pred EEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCc
Q 000707 304 LADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSAN 383 (1341)
Q Consensus 304 ~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~ 383 (1341)
.+-.|+ .|+||..-|+|+.||...|.++.... .....|++++....
T Consensus 211 ~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~------------~h~adVl~Lav~~~--------------------- 256 (691)
T KOG2048|consen 211 LFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHS------------CHDADVLALAVADN--------------------- 256 (691)
T ss_pred EEeecC-cEEEecCCceEEEEcccCcchhhhhh------------hhhcceeEEEEcCC---------------------
Confidence 776555 68999999999999998876443220 00113444443322
Q ss_pred cccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCccccccccc
Q 000707 384 VDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEA 463 (1341)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~ 463 (1341)
+.++.+++.|++|-.+...+....
T Consensus 257 -----------------~d~vfsaGvd~~ii~~~~~~~~~~--------------------------------------- 280 (691)
T KOG2048|consen 257 -----------------EDRVFSAGVDPKIIQYSLTTNKSE--------------------------------------- 280 (691)
T ss_pred -----------------CCeEEEccCCCceEEEEecCCccc---------------------------------------
Confidence 458999999999988766543210
Q ss_pred ccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEE
Q 000707 464 GKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDV 543 (1341)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~l 543 (1341)
+...+.-..|+.-|.++++.+ ..+.+|+.|+++.+
T Consensus 281 ---------------------------wv~~~~r~~h~hdvrs~av~~------------------~~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 281 ---------------------------WVINSRRDLHAHDVRSMAVIE------------------NALISGGRDFTLAI 315 (691)
T ss_pred ---------------------------eeeeccccCCcccceeeeeec------------------ceEEecceeeEEEE
Confidence 001112234677788888765 37889999999887
Q ss_pred EeCCCCcE----EEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCC----c--eeeeEEeccCCC
Q 000707 544 VDVSANAV----TASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG----I--NRAFRVLQKPER 613 (1341)
Q Consensus 544 WDl~tg~~----~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG----~--~~~l~~l~~~~~ 613 (1341)
--...-.. .+....|... +...+..+++..= +.+.+.+|-+-++ + .+.+-.+.-.+.
T Consensus 316 ~~s~~~~~~~h~~~~~~p~~~~---v~~a~~~~L~~~w----------~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~ 382 (691)
T KOG2048|consen 316 CSSREFKNMDHRQKNLFPASDR---VSVAPENRLLVLW----------KAHGVDLWRLGSVILQGEYNYIHLLKLFTKEK 382 (691)
T ss_pred ccccccCchhhhccccccccce---eecCccceEEEEe----------ccccccceeccCcccccccChhhheeeecCCc
Confidence 66533111 1111111111 1112333333211 1235667766443 1 111111222355
Q ss_pred CCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec--cC------ceEEEEEcCCCCCCCCCCCCCcccccccCCC
Q 000707 614 APIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL--AL------PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDH 685 (1341)
Q Consensus 614 ~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l--~~------~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~ 685 (1341)
..|.+.+.||+|++++.+.- ..++|+.+ +....++.. +. +...+.|+
T Consensus 383 ~nIs~~aiSPdg~~Ia~st~-~~~~iy~L-~~~~~vk~~~v~~~~~~~~~a~~i~ft----------------------- 437 (691)
T KOG2048|consen 383 ENISCAAISPDGNLIAISTV-SRTKIYRL-QPDPNVKVINVDDVPLALLDASAISFT----------------------- 437 (691)
T ss_pred cceeeeccCCCCCEEEEeec-cceEEEEe-ccCcceeEEEeccchhhhccceeeEEE-----------------------
Confidence 68999999999999998764 35688887 321122211 10 00111111
Q ss_pred CCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEe-cCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-
Q 000707 686 KADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 686 ~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
.++..+..++ .+..+.+++.++..-+......+. +....|+.|+.
T Consensus 438 -----------------------------id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~S 484 (691)
T KOG2048|consen 438 -----------------------------IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVS 484 (691)
T ss_pred -----------------------------ecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEc
Confidence 1223333333 666777777754322111111111 12345766666
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCceeeec-cCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 764 -RLPHVVMGDRSGNIRWWDVTTGHSSQFS-THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~~~~l~-gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
||++||+.+.+|.|.+|++.+++.+-+. .-...|+..+|+|..- .+|+++..|+.+.=+|+..
T Consensus 485 sdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~-----~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 485 SDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVR-----NRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred CCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeecccccc-----CcEEEEecCCeEEEEecch
Confidence 9999999999999999999998866553 4458999999997632 6799999999999999943
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=4.3e-26 Score=244.84 Aligned_cols=278 Identities=16% Similarity=0.226 Sum_probs=222.4
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEEeecCCCeEEEEEcCCC-cE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS-RL 573 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~~H~~~V~~l~fs~d~-~l 573 (1341)
++.||.+.|+.+.|+| +|+.+|+|+.|..|.+|++... +....+.+|+++|..+.|..|+ .+
T Consensus 42 ~l~gh~geI~~~~F~P----------------~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHP----------------DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred hcCCCcceEEEEEECC----------------CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEE
Confidence 4678999999999999 6999999999999999997533 2356778999999999999987 56
Q ss_pred EEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCE-EEEEECCCcEEEEeccCCCceeeec
Q 000707 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRY-LLILFRDAPVEVWAMTKNPIMLRSL 652 (1341)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~-Las~s~D~~I~vWDl~~t~~~l~~l 652 (1341)
+|++.|. +++.||+++|+ .++.+++ |..-|+++..+.-|.. +.+++.|+++||||+ ++...++++
T Consensus 106 ~S~gtDk----------~v~~wD~~tG~--~~rk~k~-h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~-R~k~~~~t~ 171 (338)
T KOG0265|consen 106 LSCGTDK----------TVRGWDAETGK--RIRKHKG-HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDI-RKKEAIKTF 171 (338)
T ss_pred EEecCCc----------eEEEEecccce--eeehhcc-ccceeeecCccccCCeEEEecCCCceEEEEee-cccchhhcc
Confidence 6766654 89999999999 6777666 8888888886655654 557899999999999 777788877
Q ss_pred c--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEE
Q 000707 653 A--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1341)
Q Consensus 653 ~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~ 730 (1341)
. -+++++.|.-+ ++...+++-|+.|+
T Consensus 172 ~~kyqltAv~f~d~----------------------------------------------------s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDT----------------------------------------------------SDQVISGGIDNDIK 199 (338)
T ss_pred ccceeEEEEEeccc----------------------------------------------------ccceeeccccCcee
Confidence 5 35688888622 24456889999999
Q ss_pred EEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCC----c-eeeeccCC----CcEEE
Q 000707 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTG----H-SSQFSTHR----EGIRR 799 (1341)
Q Consensus 731 vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg----~-~~~l~gH~----~~V~~ 799 (1341)
+||+..+.... .+.||...|+.|+. +|.++.+-+.|.++++||++-- + +..+.||. .....
T Consensus 200 vWd~r~~d~~~--------~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 200 VWDLRKNDGLY--------TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeccccCcceE--------EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 99996544321 23478899999887 9999999999999999999752 2 34566654 34566
Q ss_pred EEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEE
Q 000707 800 IKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLI 879 (1341)
Q Consensus 800 V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvW 879 (1341)
.+|||+ + ..+..++.|+.+.+||..... +...+ .||. +.|..++|+|. +++ |.+++.|.+|-+=
T Consensus 272 cswsp~--~----~~i~ags~dr~vyvwd~~~r~-~lykl-pGh~--gsvn~~~Fhp~-----e~i-ils~~sdk~i~lg 335 (338)
T KOG0265|consen 272 CSWSPN--G----TKITAGSADRFVYVWDTTSRR-ILYKL-PGHY--GSVNEVDFHPT-----EPI-ILSCSSDKTIYLG 335 (338)
T ss_pred eeccCC--C----CccccccccceEEEeeccccc-EEEEc-CCcc--eeEEEeeecCC-----CcE-EEEeccCceeEee
Confidence 789999 4 568889999999999998876 44555 8997 67999999998 774 7899999998753
No 42
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.5e-27 Score=258.44 Aligned_cols=237 Identities=19% Similarity=0.301 Sum_probs=191.3
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
|.||++.|.|+.++- +++++|+.|.||+|||+.+|++++++-+|..+|..+.|+. |-+++.
T Consensus 233 L~GHtGSVLCLqyd~------------------rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g~mvtc 293 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE------------------RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-GYMVTC 293 (499)
T ss_pred hhcCCCcEEeeeccc------------------eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-CEEEEe
Confidence 346899999999764 6999999999999999999999999999999999999964 577877
Q ss_pred ecCCcccccCcccCeEEEEEccCCc-eeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGI-NRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP 655 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~-~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~ 655 (1341)
|.| .++.+||+.+.. ....+++.| |.+.|+.+.|+. +|+++++.|++|++|++ .++.++|++.++
T Consensus 294 SkD----------rsiaVWdm~sps~it~rrVLvG-HrAaVNvVdfd~--kyIVsASgDRTikvW~~-st~efvRtl~gH 359 (499)
T KOG0281|consen 294 SKD----------RSIAVWDMASPTDITLRRVLVG-HRAAVNVVDFDD--KYIVSASGDRTIKVWST-STCEFVRTLNGH 359 (499)
T ss_pred cCC----------ceeEEEeccCchHHHHHHHHhh-hhhheeeecccc--ceEEEecCCceEEEEec-cceeeehhhhcc
Confidence 765 489999996543 223445666 889999999875 59999999999999999 699999987643
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
-.+++-. | -.+..+++|+.|.+|++||++
T Consensus 360 kRGIACl--------Q-------------------------------------------Yr~rlvVSGSSDntIRlwdi~ 388 (499)
T KOG0281|consen 360 KRGIACL--------Q-------------------------------------------YRDRLVVSGSSDNTIRLWDIE 388 (499)
T ss_pred cccceeh--------h-------------------------------------------ccCeEEEecCCCceEEEEecc
Confidence 2222211 0 123567889999999999996
Q ss_pred -CCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-e---------eeeccCCCcEEEEEEcc
Q 000707 736 -GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-S---------SQFSTHREGIRRIKFSP 804 (1341)
Q Consensus 736 -~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~---------~~l~gH~~~V~~V~fSP 804 (1341)
|..++- +.||...|.|+-||.+.+++|..||+|++||+.++. . .++..|+|+|..+.|..
T Consensus 389 ~G~cLRv---------LeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 389 CGACLRV---------LEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred ccHHHHH---------HhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 444432 348999999999999999999999999999998864 1 24567999999999954
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECCCCCc
Q 000707 805 VVPGDRSRGRIAVLFHDNTFSVFDLDSQDP 834 (1341)
Q Consensus 805 ~~~gd~~~~~Las~s~DgtI~IWDl~~~~~ 834 (1341)
.+|++++.|.+|-|||...+.+
T Consensus 460 --------fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 460 --------FQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred --------eEEEeccCCCeEEEEEcCCCCc
Confidence 3688889999999999987654
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.9e-25 Score=290.45 Aligned_cols=286 Identities=13% Similarity=0.238 Sum_probs=219.4
Q ss_pred eeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----c----EEEEEeecCCCeEEEE
Q 000707 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----A----VTASFSVHNGTVRGLR 566 (1341)
Q Consensus 495 g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----~----~~~~l~~H~~~V~~l~ 566 (1341)
|.+..|...|++++|+| ++.++|+|+.||+|+|||+.+. . ....+. +...|.++.
T Consensus 477 ~~~~~~~~~V~~i~fs~----------------dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~ 539 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDR----------------DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGIC 539 (793)
T ss_pred ccccCCCCcEEEEEECC----------------CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEE
Confidence 55667899999999998 5889999999999999998542 1 122333 346899999
Q ss_pred EcCC-C-cEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECC-CCCEEEEEECCCcEEEEecc
Q 000707 567 WLGN-S-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMT 643 (1341)
Q Consensus 567 fs~d-~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~Sp-dG~~Las~s~D~~I~vWDl~ 643 (1341)
|.+. + .+++++ .|++|+|||+.+++ .+..+.+ |...|++++|+| ++.+|++|+.|++|++||+
T Consensus 540 ~~~~~~~~las~~----------~Dg~v~lWd~~~~~--~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~- 605 (793)
T PLN00181 540 WNSYIKSQVASSN----------FEGVVQVWDVARSQ--LVTEMKE-HEKRVWSIDYSSADPTLLASGSDDGSVKLWSI- 605 (793)
T ss_pred eccCCCCEEEEEe----------CCCeEEEEECCCCe--EEEEecC-CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC-
Confidence 9874 3 444433 35699999999887 5566555 888999999996 7899999999999999999
Q ss_pred CCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEE
Q 000707 644 KNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1341)
Q Consensus 644 ~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la 721 (1341)
+++..+..+. ..+.++.|+++ .+..++
T Consensus 606 ~~~~~~~~~~~~~~v~~v~~~~~---------------------------------------------------~g~~la 634 (793)
T PLN00181 606 NQGVSIGTIKTKANICCVQFPSE---------------------------------------------------SGRSLA 634 (793)
T ss_pred CCCcEEEEEecCCCeEEEEEeCC---------------------------------------------------CCCEEE
Confidence 6777766554 24556666432 246789
Q ss_pred EEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCC------c-eeeeccC
Q 000707 722 FALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTG------H-SSQFSTH 793 (1341)
Q Consensus 722 ~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~LasGs~DgtI~lWDl~tg------~-~~~l~gH 793 (1341)
+++.||+|++||+....... ..+.+|...|.++.| ++.+|++|+.|++|++||+..+ . ++++.+|
T Consensus 635 tgs~dg~I~iwD~~~~~~~~-------~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPL-------CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred EEeCCCeEEEEECCCCCccc-------eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 99999999999996432100 012367788999999 8899999999999999999743 2 5678999
Q ss_pred CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc-cc-----ccC---CCCCCcEEEEEEcCCCCCCCCC
Q 000707 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN-SL-----LQP---QFPGTLVLELDWLPTRTDKNDP 864 (1341)
Q Consensus 794 ~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~-~l-----~~g---h~~~~~V~~l~ws~~~~~~g~~ 864 (1341)
...|..++|+|+ + ++||+++.|++|+|||...+.++.. .. ..+ +.+...|.++.|+|+ +.
T Consensus 708 ~~~i~~v~~s~~--~----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~----~~- 776 (793)
T PLN00181 708 TNVKNFVGLSVS--D----GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ----SS- 776 (793)
T ss_pred CCCeeEEEEcCC--C----CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC----CC-
Confidence 999999999998 4 7899999999999999876542210 00 001 112356999999997 44
Q ss_pred eEEEEEECCCcEEEEEc
Q 000707 865 LVLCIAGADSSFRLIEV 881 (1341)
Q Consensus 865 ~~Las~s~DgtIrvWdv 881 (1341)
.|++|+.||+|+||++
T Consensus 777 -~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 777 -TLVAANSTGNIKILEM 792 (793)
T ss_pred -eEEEecCCCcEEEEec
Confidence 6889999999999996
No 44
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.4e-27 Score=264.21 Aligned_cols=283 Identities=13% Similarity=0.159 Sum_probs=224.5
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcEEEEEeecCCCeEEEEEcCCC-cE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAVTASFSVHNGTVRGLRWLGNS-RL 573 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~~~~l~~H~~~V~~l~fs~d~-~l 573 (1341)
.+.||+..|+++.|.|- .+.||++|++|+.|+|||+-. +.++++|.||+.+|+++.|+.+| ++
T Consensus 209 ~~~gH~kgvsai~~fp~---------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPK---------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred eccCCccccchhhhccc---------------eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee
Confidence 46789999999999982 589999999999999999976 88999999999999999999987 78
Q ss_pred EEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCC-CEEEEEECCCcEEEEeccCCCceeeec
Q 000707 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSG-RYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1341)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG-~~Las~s~D~~I~vWDl~~t~~~l~~l 652 (1341)
+|+|+| ..+++||++||+ ++..+. ....++++.|.||+ +.+++|..|+.|+.||+ +++..++++
T Consensus 274 LS~sfD----------~~lKlwDtETG~--~~~~f~--~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi-Rs~kvvqeY 338 (503)
T KOG0282|consen 274 LSASFD----------RFLKLWDTETGQ--VLSRFH--LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI-RSGKVVQEY 338 (503)
T ss_pred eeeecc----------eeeeeeccccce--EEEEEe--cCCCceeeecCCCCCcEEEEecCCCcEEEEec-cchHHHHHH
Confidence 887776 489999999999 444443 33577999999999 88899999999999999 899888776
Q ss_pred c---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcE
Q 000707 653 A---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1341)
Q Consensus 653 ~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I 729 (1341)
. ..+..+.|-+. +..|++++.|+++
T Consensus 339 d~hLg~i~~i~F~~~----------------------------------------------------g~rFissSDdks~ 366 (503)
T KOG0282|consen 339 DRHLGAILDITFVDE----------------------------------------------------GRRFISSSDDKSV 366 (503)
T ss_pred HhhhhheeeeEEccC----------------------------------------------------CceEeeeccCccE
Confidence 6 24555666532 4568899999999
Q ss_pred EEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc----eeeeccCC--CcEEEEEEc
Q 000707 730 GVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH----SSQFSTHR--EGIRRIKFS 803 (1341)
Q Consensus 730 ~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~----~~~l~gH~--~~V~~V~fS 803 (1341)
++|+..-.... +..... .-|+-....+...+++++.-+.|+.|.++.+.-.- -+.|.||. |.-..|.||
T Consensus 367 riWe~~~~v~i--k~i~~~---~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 367 RIWENRIPVPI--KNIADP---EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred EEEEcCCCccc--hhhcch---hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 99998532211 000000 02333333444589999999999999999975431 34578886 667788999
Q ss_pred cCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 804 PVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 804 P~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
|| | ++|++|..||.+.+||-++-+ +...+ ..|. ..+..++|+|. .+-.+|++|.||.|++|+
T Consensus 442 pD--G----~~l~SGdsdG~v~~wdwkt~k-l~~~l-kah~--~~ci~v~wHP~-----e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PD--G----RTLCSGDSDGKVNFWDWKTTK-LVSKL-KAHD--QPCIGVDWHPV-----EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CC--C----CeEEeecCCccEEEeechhhh-hhhcc-ccCC--cceEEEEecCC-----CcceeEecccCceeEecC
Confidence 99 6 789999999999999999877 44444 6664 68999999996 444689999999999996
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=6.2e-25 Score=246.34 Aligned_cols=278 Identities=21% Similarity=0.359 Sum_probs=220.7
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
+.+|..+|++++++| +++++++|+.||.|++||+.++.....+..|...+..+.|.+++..+.+
T Consensus 5 ~~~h~~~i~~~~~~~----------------~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 5 LKGHTGGVTCVAFSP----------------DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68 (289)
T ss_pred hcccCCCEEEEEEcC----------------CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE
Confidence 457899999999998 5789999999999999999999888899999999999999998854433
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--- 653 (1341)
+. .++.+++||+.+++ .+..+.. |...|.++.|+++++++++++.|+.|.+||+ .++.....+.
T Consensus 69 ~~---------~~~~i~i~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~ 135 (289)
T cd00200 69 GS---------SDKTIRLWDLETGE--CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDV-ETGKCLTTLRGHT 135 (289)
T ss_pred Ec---------CCCeEEEEEcCccc--ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEEC-CCcEEEEEeccCC
Confidence 22 24689999998865 4444444 6678999999999999999988999999999 5666665544
Q ss_pred CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 654 ~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
..++++.|+|+ +..++++..||.|++||
T Consensus 136 ~~i~~~~~~~~----------------------------------------------------~~~l~~~~~~~~i~i~d 163 (289)
T cd00200 136 DWVNSVAFSPD----------------------------------------------------GTFVASSSQDGTIKLWD 163 (289)
T ss_pred CcEEEEEEcCc----------------------------------------------------CCEEEEEcCCCcEEEEE
Confidence 24667777643 24556666699999999
Q ss_pred ecCCe-eecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCC
Q 000707 734 VHGRR-IRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 734 v~~~~-v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd 809 (1341)
+...+ +.. +..|...+.+++| +++.+++++.||.|++||+.+++ ...+..|...|.++.|+|+ +
T Consensus 164 ~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~--~- 231 (289)
T cd00200 164 LRTGKCVAT---------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD--G- 231 (289)
T ss_pred cccccccee---------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC--C-
Confidence 96433 221 1245567889998 66789999999999999999877 5567789999999999998 3
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
..+++++.|+.|++||+.+++.+ ..+ .+|. ..|.+++|+++ +. +|++++.||.|++|+
T Consensus 232 ---~~~~~~~~~~~i~i~~~~~~~~~-~~~-~~~~--~~i~~~~~~~~----~~--~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 ---YLLASGSEDGTIRVWDLRTGECV-QTL-SGHT--NSVTSLAWSPD----GK--RLASGSADGTIRIWD 289 (289)
T ss_pred ---cEEEEEcCCCcEEEEEcCCceeE-EEc-cccC--CcEEEEEECCC----CC--EEEEecCCCeEEecC
Confidence 56666666999999999987643 333 4554 57999999997 44 688999999999996
No 46
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.2e-26 Score=250.16 Aligned_cols=251 Identities=13% Similarity=0.196 Sum_probs=205.4
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcEEEEEeecCCCeEEEEEcCCC-cEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAVTASFSVHNGTVRGLRWLGNS-RLV 574 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~~~~l~~H~~~V~~l~fs~d~-~ll 574 (1341)
|.||...|..|+|+. .|+++|+.+.|=.+++||.++ -++.+.+.+|...|.++.|.|.| .++
T Consensus 146 LrGHt~sv~di~~~a----------------~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il 209 (406)
T KOG0295|consen 146 LRGHTDSVFDISFDA----------------SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL 209 (406)
T ss_pred hhccccceeEEEEec----------------CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeee
Confidence 345777889999886 689999999999999999976 46788899999999999999976 555
Q ss_pred EEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc---eeee
Q 000707 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI---MLRS 651 (1341)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~---~l~~ 651 (1341)
|++. |++|+.|++.+|- ++.++++ |...|+.++++.||.++|+++.|.+|++|-+ .+++ .+|.
T Consensus 210 S~sr----------D~tik~We~~tg~--cv~t~~~-h~ewvr~v~v~~DGti~As~s~dqtl~vW~~-~t~~~k~~lR~ 275 (406)
T KOG0295|consen 210 SCSR----------DNTIKAWECDTGY--CVKTFPG-HSEWVRMVRVNQDGTIIASCSNDQTLRVWVV-ATKQCKAELRE 275 (406)
T ss_pred eccc----------ccceeEEecccce--eEEeccC-chHhEEEEEecCCeeEEEecCCCceEEEEEe-ccchhhhhhhc
Confidence 5554 4699999999998 7778777 7789999999999999999999999999998 5774 4565
Q ss_pred ccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEE
Q 000707 652 LALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGV 731 (1341)
Q Consensus 652 l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~v 731 (1341)
.+.++.+++|.|........ + ..+....++.+++++.|++|++
T Consensus 276 hEh~vEci~wap~~~~~~i~---------~----------------------------at~~~~~~~~l~s~SrDktIk~ 318 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSIS---------E----------------------------ATGSTNGGQVLGSGSRDKTIKI 318 (406)
T ss_pred cccceEEEEecccccCcchh---------h----------------------------ccCCCCCccEEEeecccceEEE
Confidence 66778899999864321100 0 0000112467889999999999
Q ss_pred EEecC-CeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCC
Q 000707 732 FEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVP 807 (1341)
Q Consensus 732 wdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~ 807 (1341)
||+.. ..+.. +.||+.+|..++| .|++|+|+..|+++++||+++++ .++++.|...|.++.|+-+.
T Consensus 319 wdv~tg~cL~t---------L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~- 388 (406)
T KOG0295|consen 319 WDVSTGMCLFT---------LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA- 388 (406)
T ss_pred EeccCCeEEEE---------EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCC-
Confidence 99964 44432 4589999999999 59999999999999999999998 57889999999999998874
Q ss_pred CCCCCCEEEEEECCCeEEEEEC
Q 000707 808 GDRSRGRIAVLFHDNTFSVFDL 829 (1341)
Q Consensus 808 gd~~~~~Las~s~DgtI~IWDl 829 (1341)
-++++|+-|-++++|..
T Consensus 389 -----p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 -----PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -----ceEEeccccceeeeeec
Confidence 37999999999999975
No 47
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.6e-24 Score=245.35 Aligned_cols=113 Identities=16% Similarity=0.109 Sum_probs=105.3
Q ss_pred HHHHHHHHHccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhh-cCCccHHHHHHHHHHHhhcccccHHHHHHH
Q 000707 1168 KVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATH-LKGSDYARVLQRWADHVHHVEHNIWRALIL 1246 (1341)
Q Consensus 1168 k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~-l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~ 1246 (1341)
-.+|.||.++|+|++||+.+...+.++.|+.+|+..+||.||++|||.+ | +++..++.|.|+||+...+ ..+||+.
T Consensus 856 p~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~-~~eaIe~ 932 (1189)
T KOG2041|consen 856 PVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADAN-HMEAIEK 932 (1189)
T ss_pred HHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcc-hHHHHHH
Confidence 5579999999999999999999999999999999999999999999999 6 6799999999999998775 4599999
Q ss_pred HHHhCCHHHHHHHHHh---------------cCCchHHHHHHHHHHHHhhhh
Q 000707 1247 YVAAGGLQEALAALRE---------------AQHPDTAAMFVLACREIYAEI 1283 (1341)
Q Consensus 1247 ~~~~g~~~~a~~~l~~---------------~~~~~~aa~~~~~~~e~~~~~ 1283 (1341)
++++|.|.+|++||++ +|+|+++||++|.+||..++.
T Consensus 933 ~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~ 984 (1189)
T KOG2041|consen 933 DRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKEL 984 (1189)
T ss_pred hhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999997 889999999999999987754
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=6.3e-25 Score=268.65 Aligned_cols=283 Identities=17% Similarity=0.236 Sum_probs=224.1
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEeecCCCeEEEEEcCCCcEEEEe
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA--VTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~--~~~~l~~H~~~V~~l~fs~d~~llS~s 577 (1341)
+...|+++.|+| +|..+++++.|++|++|++.++. +.+++.+|...|++++|+++++++..+
T Consensus 158 ~~~sv~~~~fs~----------------~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 158 ECPSVTCVDFSP----------------DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred ccCceEEEEEcC----------------CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe
Confidence 367899999998 58899999999999999998888 788889999999999999999655432
Q ss_pred cCCcccccCcccCeEEEEEcc-CCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---
Q 000707 578 YSQVNEKSGGYINRLVVTCLR-SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--- 653 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~-tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--- 653 (1341)
+.|.+++|||+. .+. .++++++ |...|++++|+|+|+++++|+.|++|+|||+ +++++++.++
T Consensus 222 ---------s~D~tiriwd~~~~~~--~~~~l~g-H~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~-~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 222 ---------SDDKTLRIWDLKDDGR--NLKTLKG-HSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV-RTGECVRKLKGHS 288 (456)
T ss_pred ---------cCCceEEEeeccCCCe--EEEEecC-CCCceEEEEecCCCCEEEEecCCCcEEEEec-cCCeEEEeeeccC
Confidence 335699999994 445 6788887 8999999999999999999999999999999 7899988877
Q ss_pred CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 654 ~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
.++++++|+++ +..+++++.||.|++||
T Consensus 289 ~~is~~~f~~d----------------------------------------------------~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 289 DGISGLAFSPD----------------------------------------------------GNLLVSASYDGTIRVWD 316 (456)
T ss_pred CceEEEEECCC----------------------------------------------------CCEEEEcCCCccEEEEE
Confidence 35677888754 45688889999999999
Q ss_pred ecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEE---EEccCCC
Q 000707 734 VHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRI---KFSPVVP 807 (1341)
Q Consensus 734 v~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V---~fSP~~~ 807 (1341)
+.+...+ ....+.+.. ... .++++.| +|++|+++..|+++++||+..+. ...+.+|...++++ .++++
T Consensus 317 ~~~~~~~-~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 390 (456)
T KOG0266|consen 317 LETGSKL-CLKLLSGAE--NSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTG-- 390 (456)
T ss_pred CCCCcee-eeecccCCC--CCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCC--
Confidence 9765521 000111110 121 4777777 99999999999999999999887 57788888764332 33344
Q ss_pred CCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEE--CCCcEEEEEcc
Q 000707 808 GDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG--ADSSFRLIEVN 882 (1341)
Q Consensus 808 gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s--~DgtIrvWdv~ 882 (1341)
+ ..+.+++.|+.|.+||+.++..+ ..+ .+|. ...+.+++|+|. .. ++++++ .|+.+++|...
T Consensus 391 ~----~~i~sg~~d~~v~~~~~~s~~~~-~~l-~~h~-~~~~~~~~~~~~-----~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 391 G----KLIYSGSEDGSVYVWDSSSGGIL-QRL-EGHS-KAAVSDLSSHPT-----EN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred C----CeEEEEeCCceEEEEeCCccchh-hhh-cCCC-CCceeccccCCC-----cC-eeeecCcCCCceEEEecCC
Confidence 3 67999999999999999987633 334 7784 367999999997 33 567777 79999999754
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=5.4e-25 Score=269.26 Aligned_cols=257 Identities=16% Similarity=0.221 Sum_probs=209.1
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEE-cCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 17 MLPGPPSRNNFGSADLSPSG-LLAFA-SGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~g-s~~~V~v~d~~~~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
++-+. +...+.++++|++| .+|++ ++..|.+|+...++ ..+++.+|.. .|..++|+|+
T Consensus 153 ~~~~~-~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-----------~v~~~~fs~d------ 214 (456)
T KOG0266|consen 153 TLAGH-ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-----------GVSDVAFSPD------ 214 (456)
T ss_pred eeccc-ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccc-----------ceeeeEECCC------
Confidence 44443 34568889999999 77777 56799999998888 8888999998 9999999987
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC 171 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv-~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~ 171 (1341)
|.+|++|+.|++|+|||+ ..+..++++ .+|+. .|++++|+|++ +++++++.|++|+|||+.+|++
T Consensus 215 --------~~~l~s~s~D~tiriwd~~~~~~~~~~l--~gH~~-~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 215 --------GSYLLSGSDDKTLRIWDLKDDGRNLKTL--KGHST-YVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred --------CcEEEEecCCceEEEeeccCCCeEEEEe--cCCCC-ceEEEEecCCC---CEEEEecCCCcEEEEeccCCeE
Confidence 578999999999999999 555788885 69999 99999999987 8999999999999999999999
Q ss_pred EEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000707 172 MWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1341)
Q Consensus 172 i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1341)
+.++.+|.+.|++++|+| |++.|++++.||.|++||.....- . . +..+.+. ..
T Consensus 281 ~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~------~-~-------~~~~~~~------------~~ 333 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSK------L-C-------LKLLSGA------------EN 333 (456)
T ss_pred EEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCce------e-e-------eecccCC------------CC
Confidence 999999999999999999 999999999999999999755210 0 0 0011110 00
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCc-cceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 252 ~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
.. .+..+.|+|+++.++++..|+.+++||+..+..+.....+... ..+.+....+++.++++++.|++|.+|+..++.
T Consensus 334 ~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 334 SA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred CC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 10 2567799999999999999999999999999888777654332 133344446799999999999999999998876
Q ss_pred eee
Q 000707 331 QVH 333 (1341)
Q Consensus 331 ~~~ 333 (1341)
.+.
T Consensus 413 ~~~ 415 (456)
T KOG0266|consen 413 ILQ 415 (456)
T ss_pred hhh
Confidence 443
No 50
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=5.4e-26 Score=271.04 Aligned_cols=252 Identities=12% Similarity=0.113 Sum_probs=211.6
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc-------------------------------
Q 000707 8 PADSWDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL------------------------------- 54 (1341)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~------------------------------- 54 (1341)
.-++|-| +|.-.. ...++|+++|+++ +||.|. ++.|++|.....
T Consensus 365 ~lpSic~-YT~~nt--~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 365 SLPSICM-YTFHNT--YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCcEEE-EEEEEc--CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 3445543 444332 3468999999998 899884 679999986631
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~ 134 (1341)
....+|-||.+ +|..++|+|+. ++|+|++.|++||+|...+..++.. ..||..
T Consensus 442 ~~~~~L~GH~G-----------PVyg~sFsPd~--------------rfLlScSED~svRLWsl~t~s~~V~--y~GH~~ 494 (707)
T KOG0263|consen 442 GTSRTLYGHSG-----------PVYGCSFSPDR--------------RFLLSCSEDSSVRLWSLDTWSCLVI--YKGHLA 494 (707)
T ss_pred ceeEEeecCCC-----------ceeeeeecccc--------------cceeeccCCcceeeeecccceeEEE--ecCCCc
Confidence 12356889998 99999999874 7899999999999999999888777 479988
Q ss_pred CCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000707 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1341)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~ 214 (1341)
||.++.|+|-| .+.||++.|++.++|.++.-.++..+.+|-..|.|++|+| ++..++++|.|.++++||+.+...
T Consensus 495 -PVwdV~F~P~G---yYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~ 569 (707)
T KOG0263|consen 495 -PVWDVQFAPRG---YYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS 569 (707)
T ss_pred -ceeeEEecCCc---eEEEecCCCceeeeeecccCCchhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE
Confidence 99999999987 9999999999999999999888888899888999999999 999999999999999999865321
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecC
Q 000707 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALP 294 (1341)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~ 294 (1341)
.+-| .+|...|.+++|||+|++|++++.|+.|.|||+.+|..+..+.
T Consensus 570 ----VRiF---------------------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-- 616 (707)
T KOG0263|consen 570 ----VRIF---------------------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-- 616 (707)
T ss_pred ----EEEe---------------------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh--
Confidence 2222 1233458889999999999999999999999999999887665
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 295 RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
++.+.+.++.||+||.+||++|.|.+|++||+.
T Consensus 617 ~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 617 GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 346788899999999999999999999999986
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.2e-25 Score=264.63 Aligned_cols=287 Identities=17% Similarity=0.268 Sum_probs=231.5
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEec
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~ 578 (1341)
.-++.|..++|+| ..+++.++-.+|.|++||..-+.++..|..|.++|++|.|.|...+..
T Consensus 7 skSsRvKglsFHP----------------~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFV--- 67 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHP----------------KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFV--- 67 (1202)
T ss_pred cccccccceecCC----------------CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEE---
Confidence 3467888999999 479999999999999999999999999999999999999999886553
Q ss_pred CCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc---
Q 000707 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP--- 655 (1341)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~--- 655 (1341)
+|+.|-.|+||+..+.+ ++-++.| |.+.|+.+.|++.--+++++|.|.||+||+. .+++++..+.++
T Consensus 68 ------SGGDDykIkVWnYk~rr--clftL~G-HlDYVRt~~FHheyPWIlSASDDQTIrIWNw-qsr~~iavltGHnHY 137 (1202)
T KOG0292|consen 68 ------SGGDDYKIKVWNYKTRR--CLFTLLG-HLDYVRTVFFHHEYPWILSASDDQTIRIWNW-QSRKCIAVLTGHNHY 137 (1202)
T ss_pred ------ecCCccEEEEEecccce--ehhhhcc-ccceeEEeeccCCCceEEEccCCCeEEEEec-cCCceEEEEecCceE
Confidence 34455699999998876 6667777 8899999999999999999999999999999 899998877643
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
|.+..|+|. .+.+++++.|.+||+||+.
T Consensus 138 VMcAqFhpt----------------------------------------------------EDlIVSaSLDQTVRVWDis 165 (1202)
T KOG0292|consen 138 VMCAQFHPT----------------------------------------------------EDLIVSASLDQTVRVWDIS 165 (1202)
T ss_pred EEeeccCCc----------------------------------------------------cceEEEecccceEEEEeec
Confidence 456666642 3678999999999999997
Q ss_pred CCeeecccCC--------------CCC-------CccccccceEEEEeecC--CEEEEEeCCCcEEEEECCCCc---eee
Q 000707 736 GRRIRDFRPK--------------WPS-------SSFISSDGLITAMAYRL--PHVVMGDRSGNIRWWDVTTGH---SSQ 789 (1341)
Q Consensus 736 ~~~v~~~~~~--------------~~~-------~~l~~~~~~v~sla~dg--~~LasGs~DgtI~lWDl~tg~---~~~ 789 (1341)
|-+-+...+- +.+ ..+.||+.-|+-.+|.+ ..++||+.|+.|++|.+...+ .-+
T Consensus 166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehh
Confidence 7543221110 111 12458999999999966 899999999999999997544 557
Q ss_pred eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEE
Q 000707 790 FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCI 869 (1341)
Q Consensus 790 l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las 869 (1341)
..||.+.|.++-|+|. . ..|++.+.|++|||||+.....+ .++..- +.+.+-++-+|. .+ |..
T Consensus 246 crgH~nnVssvlfhp~--q----~lIlSnsEDksirVwDm~kRt~v-~tfrre---ndRFW~laahP~----lN---LfA 308 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPH--Q----DLILSNSEDKSIRVWDMTKRTSV-QTFRRE---NDRFWILAAHPE----LN---LFA 308 (1202)
T ss_pred hhcccCCcceEEecCc--c----ceeEecCCCccEEEEecccccce-eeeecc---CCeEEEEEecCC----cc---eee
Confidence 7999999999999997 2 57889999999999999988754 333222 356777888886 33 457
Q ss_pred EECCCcEEEEEccC
Q 000707 870 AGADSSFRLIEVNT 883 (1341)
Q Consensus 870 ~s~DgtIrvWdv~~ 883 (1341)
++.|+-+.|+.+..
T Consensus 309 AgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 309 AGHDSGMIVFKLER 322 (1202)
T ss_pred eecCCceEEEEEcc
Confidence 88899888988774
No 52
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.3e-25 Score=254.66 Aligned_cols=277 Identities=15% Similarity=0.217 Sum_probs=223.2
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
++.++..|.+|.|+| ..+++..+-.+|.|.|||.+|..+++.|.+-..+|++..|.+-...+..
T Consensus 9 ~~~rSdRVKsVd~HP----------------tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHP----------------TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hhccCCceeeeecCC----------------CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEE
Confidence 344788999999999 4799999999999999999999999999999999999999875544433
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc-
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP- 655 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~- 655 (1341)
|+.|..|+|++..|++ .+..+.. |.+.|++|+++|..-|++++|.|-+||+||-.+.-.+.+++.++
T Consensus 73 ---------GsDD~~IrVfnynt~e--kV~~FeA-H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 73 ---------GSDDMQIRVFNYNTGE--KVKTFEA-HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred ---------ecCCceEEEEecccce--eeEEeec-cccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 3335689999999998 5556554 89999999999999999999999999999995445566777643
Q ss_pred --eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 656 --FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 656 --v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
|..++|.|. +.+.||+++.|++|++|.
T Consensus 141 HyVMqv~fnPk---------------------------------------------------D~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 141 HYVMQVAFNPK---------------------------------------------------DPNTFASASLDRTVKVWS 169 (794)
T ss_pred eEEEEEEecCC---------------------------------------------------CccceeeeeccccEEEEE
Confidence 467888753 135689999999999999
Q ss_pred ecCCeeecccCCCCCCccccccceEEEEee----cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCC
Q 000707 734 VHGRRIRDFRPKWPSSSFISSDGLITAMAY----RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPG 808 (1341)
Q Consensus 734 v~~~~v~~~~~~~~~~~l~~~~~~v~sla~----dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~g 808 (1341)
+..... .-+|.||..-|+|+.+ |.++|++|+.|.+|+|||.+++. ..++.||...|..+.|+|..
T Consensus 170 lgs~~~--------nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~l-- 239 (794)
T KOG0276|consen 170 LGSPHP--------NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPEL-- 239 (794)
T ss_pred cCCCCC--------ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCC--
Confidence 954322 1135588888999999 56799999999999999999988 57899999999999999984
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcE
Q 000707 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSF 876 (1341)
Q Consensus 809 d~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtI 876 (1341)
-.+++|+.|||+|||...+-+ +..++.-| ..+|++++-.+. ++ .++.|...|.|
T Consensus 240 ----piiisgsEDGTvriWhs~Ty~-lE~tLn~g---leRvW~I~~~k~----~~--~i~vG~Deg~i 293 (794)
T KOG0276|consen 240 ----PIIISGSEDGTVRIWNSKTYK-LEKTLNYG---LERVWCIAAHKG----DG--KIAVGFDEGSV 293 (794)
T ss_pred ----cEEEEecCCccEEEecCccee-hhhhhhcC---CceEEEEeecCC----CC--eEEEeccCCcE
Confidence 469999999999999988866 44444222 367888887765 33 34566665554
No 53
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.5e-23 Score=245.47 Aligned_cols=591 Identities=14% Similarity=0.154 Sum_probs=360.4
Q ss_pred CccccccccCCCCCCCCCCceEeCCCCeEEE--EcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEcc
Q 000707 10 DSWDCNFMLPGPPSRNNFGSADLSPSGLLAF--ASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1341)
Q Consensus 10 ~~~~~~~~lpg~~~~~~~~a~~~s~~gllA~--gs~~~V~v~d~~~~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1341)
+.|-|-.+++| |. +++++.+..-.+.+ ++++.|.+||.+..+ +++++.--.+ ...-.|+++.|
T Consensus 89 ~~~~~i~~~~g--~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k---------~~ipLcL~~~~ 155 (764)
T KOG1063|consen 89 EYLIKIYTIQG--HC--KECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK---------EAIPLCLAALK 155 (764)
T ss_pred hheEEEEeecC--cc--eeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhh---------hHhhHHHhhhc
Confidence 45889899999 44 45666653322222 478899999986555 2233322221 00123455555
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEE
Q 000707 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1341)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1341)
+ ++--+||-|+.+..|.|.--.+++.....++.||.. .|.+|+|..-+.+..+|||++.|.+|+||.
T Consensus 156 ~------------~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~D-WIrsl~f~~~~~~~~~laS~SQD~yIRiW~ 222 (764)
T KOG1063|consen 156 N------------NKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTD-WIRSLAFARLGGDDLLLASSSQDRYIRIWR 222 (764)
T ss_pred c------------CCcEEEEecCcceEEEEeccCCcceeEEEEeeccch-hhhhhhhhccCCCcEEEEecCCceEEEEEE
Confidence 3 344567888888888888777777777777899999 999999988765347999999999999998
Q ss_pred CCCCe---------------------EEEEE----------eCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000707 166 TTSAS---------------------CMWKY----------DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1341)
Q Consensus 166 ~~tg~---------------------~i~~~----------~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~ 214 (1341)
+.-+. ....+ .+|.+-|.++-|.| ++..|.+++.|.++.+|.....
T Consensus 223 i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~-- 299 (764)
T KOG1063|consen 223 IVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDEN-- 299 (764)
T ss_pred EEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc-chhhheecccCcceEEEecCCc--
Confidence 75222 11111 26778899999999 8889999999999999963221
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCC-ceeEEEec
Q 000707 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE-TPLFSAAL 293 (1341)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~-~~l~~~~l 293 (1341)
+.+-.... |+... .+ .......+-|+|++..++.-++-|..++|-.+.. .-.....+
T Consensus 300 tGiWv~~v----------RlGe~-gg-----------~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i 357 (764)
T KOG1063|consen 300 TGIWVDVV----------RLGEV-GG-----------SAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI 357 (764)
T ss_pred cceEEEEE----------Eeecc-cc-----------cccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence 11111111 11110 01 1123567789999998999999999999994432 22222333
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcc
Q 000707 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1341)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~ 373 (1341)
.++...+.++.+.|.|++|.+++.|.|-||.-+- |.+.. . +|-.+|-++.
T Consensus 358 SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~-w--HEiaRPQiHG-------------------------- 407 (764)
T KOG1063|consen 358 SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQE-W--HEIARPQIHG-------------------------- 407 (764)
T ss_pred ccccccceeeeecCCCCEEEEeccccceeeeccc-ccccc-e--eeeccccccc--------------------------
Confidence 5666788899999999999999999999998654 32211 1 1112232211
Q ss_pred cCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEcccccccc-------ccccccccCCCcccccccccC
Q 000707 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGD-------LQKDAIKSGMDADVIDVALCG 446 (1341)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~-------~~~~~~~~g~~~~~~~v~~~g 446 (1341)
+++.|-.+......++++.....+|+++.+-.-... ..........+. .||-.|
T Consensus 408 ----------------yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA---~VpaLG 468 (764)
T KOG1063|consen 408 ----------------YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGA---NVPALG 468 (764)
T ss_pred ----------------ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccc---cccccc
Confidence 112111111112477888888889999875221100 000000000000 111111
Q ss_pred cccccC----cCcccccccccccccccccCCCCCCCCCCCCccccceeEE----EeeeccccCcceEEEEecCCCccccc
Q 000707 447 TNTNSM----ASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVS----LDGQLQILSSTVTMLAVPSPSLTATL 518 (1341)
Q Consensus 447 ~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----l~g~l~g~~~~vt~la~~p~~~~~~~ 518 (1341)
....+. ...|......... .....+..-+..+.+-++... -.-.|.||.-.|++++.+|
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et------~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~------- 535 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAET------PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP------- 535 (764)
T ss_pred ccCCCCcccccccccccceeeec------ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-------
Confidence 100000 0000000000000 000000000001112111111 1224779999999999998
Q ss_pred ccCCCCCCCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcE-EEEecCCcccccCcccCeE
Q 000707 519 ARGGNYPAVAVPLVALGTQSG-----AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRL-VSFSYSQVNEKSGGYINRL 592 (1341)
Q Consensus 519 ~~~~~~~~~~~~llAsGs~DG-----tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~l-lS~s~d~~~~~sg~~~~~i 592 (1341)
+|+++|+++... .|+||+..+-.....+.+|+-.|+.|+|+||+++ ++++.| .++
T Consensus 536 ---------~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD----------Rt~ 596 (764)
T KOG1063|consen 536 ---------TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD----------RTV 596 (764)
T ss_pred ---------CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC----------ceE
Confidence 589999987554 5899999888878889999999999999999965 555554 478
Q ss_pred EEEEccCCceee--eEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC--ceeee-----ccCceEEEEEcC
Q 000707 593 VVTCLRSGINRA--FRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP--IMLRS-----LALPFTVLEWTL 663 (1341)
Q Consensus 593 ~lwD~~tG~~~~--l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~--~~l~~-----l~~~v~~l~wsp 663 (1341)
.||....+..-. +..+ +.|..-|.+..|+|++.|+|++|+|++|+||.. ... ..+.. +..+||+++|.|
T Consensus 597 sl~~~~~~~~~e~~fa~~-k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~-~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 597 SLYEVQEDIKDEFRFACL-KAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE-PDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred Eeeeeecccchhhhhccc-cccceEEEEcccCcccceeEEecCCceEEEEec-cCchhhhhhhhchhccCCceeeEEeec
Confidence 889874432111 2222 348888999999999999999999999999988 444 22222 235678888875
Q ss_pred CCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCC-eeec-
Q 000707 664 PTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR-RIRD- 741 (1341)
Q Consensus 664 ~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~-~v~~- 741 (1341)
-... ..+..+++|...|.|.+|..... +...
T Consensus 675 ~~~~-----------------------------------------------e~~~~vavGle~GeI~l~~~~~~~~~~~~ 707 (764)
T KOG1063|consen 675 VDHN-----------------------------------------------EKGDVVAVGLEKGEIVLWRRKREHRQVTV 707 (764)
T ss_pred cccc-----------------------------------------------cccceEEEEecccEEEEEecccccccccc
Confidence 3111 11346788899999999986411 1110
Q ss_pred ----ccCCCCCCccccccceEEEEeec----------C--CEEEEEeCCCcEEEEECC
Q 000707 742 ----FRPKWPSSSFISSDGLITAMAYR----------L--PHVVMGDRSGNIRWWDVT 783 (1341)
Q Consensus 742 ----~~~~~~~~~l~~~~~~v~sla~d----------g--~~LasGs~DgtI~lWDl~ 783 (1341)
+..+.+ ...+|+..|+-+.|. . -.|++|+.|..+|++++.
T Consensus 708 ~~~~~~~~l~--~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 708 GTFNLDTRLC--ATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeeeeccccc--cccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 001111 123677888888883 1 257999999999999874
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.93 E-value=3e-25 Score=251.29 Aligned_cols=297 Identities=16% Similarity=0.181 Sum_probs=224.2
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-CeEEEEecCCCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-RSVVLWIDPDPNP 133 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t-g~~~~~l~~~~h~ 133 (1341)
+.+.++.||+. .|++++|.|. .+.+|+||+.|++|+|||+.. +.++++| .||.
T Consensus 205 k~~~~~~gH~k-----------gvsai~~fp~-------------~~hLlLS~gmD~~vklW~vy~~~~~lrtf--~gH~ 258 (503)
T KOG0282|consen 205 KLSHNLSGHTK-----------GVSAIQWFPK-------------KGHLLLSGGMDGLVKLWNVYDDRRCLRTF--KGHR 258 (503)
T ss_pred hheeeccCCcc-----------ccchhhhccc-------------eeeEEEecCCCceEEEEEEecCcceehhh--hcch
Confidence 45789999998 8999999985 367999999999999999866 8899985 7899
Q ss_pred CCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 134 KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 134 ~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
+ +|.+++|+.++ .-+.|++-|++|++||++||+++..+.. ...++|+.|.|.+...|.+|+.|+.|+.||.+...
T Consensus 259 k-~Vrd~~~s~~g---~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k 333 (503)
T KOG0282|consen 259 K-PVRDASFNNCG---TSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK 333 (503)
T ss_pred h-hhhhhhccccC---CeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH
Confidence 9 99999999987 6788899999999999999999988776 56889999999666889999999999999975411
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEec
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l 293 (1341)
-++...++ ...+..+.|-++|+..++.+.|++++||+..++-.+.-+.-
T Consensus 334 ----------------vvqeYd~h---------------Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~ 382 (503)
T KOG0282|consen 334 ----------------VVQEYDRH---------------LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIAD 382 (503)
T ss_pred ----------------HHHHHHhh---------------hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcc
Confidence 01222222 22477889999999999999999999999998876643321
Q ss_pred -CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhc
Q 000707 294 -PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKL 372 (1341)
Q Consensus 294 -~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~ 372 (1341)
+.+..+.+ ...|++.++++=+.|..|-+.....--+.. ...-..|+.++| +.
T Consensus 383 ~~~hsmP~~--~~~P~~~~~~aQs~dN~i~ifs~~~~~r~n------kkK~feGh~vaG--------ys----------- 435 (503)
T KOG0282|consen 383 PEMHTMPCL--TLHPNGKWFAAQSMDNYIAIFSTVPPFRLN------KKKRFEGHSVAG--------YS----------- 435 (503)
T ss_pred hhhccCcce--ecCCCCCeehhhccCceEEEEecccccccC------HhhhhcceeccC--------ce-----------
Confidence 23334433 335899999999999999888754211000 000111222222 00
Q ss_pred ccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccC
Q 000707 373 CLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSM 452 (1341)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~ 452 (1341)
+.+.++++|.+|++|+.||++.+||.++.+...
T Consensus 436 --------------------~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~--------------------------- 468 (503)
T KOG0282|consen 436 --------------------CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS--------------------------- 468 (503)
T ss_pred --------------------eeEEEcCCCCeEEeecCCccEEEeechhhhhhh---------------------------
Confidence 112233458899999999999999998754321
Q ss_pred cCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEE
Q 000707 453 ASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLV 532 (1341)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~ll 532 (1341)
.+..|..+++.+.|+|- ....|
T Consensus 469 -------------------------------------------~lkah~~~ci~v~wHP~---------------e~Skv 490 (503)
T KOG0282|consen 469 -------------------------------------------KLKAHDQPCIGVDWHPV---------------EPSKV 490 (503)
T ss_pred -------------------------------------------ccccCCcceEEEEecCC---------------Cccee
Confidence 12346788999999982 34679
Q ss_pred EEEeCCCcEEEEe
Q 000707 533 ALGTQSGAVDVVD 545 (1341)
Q Consensus 533 AsGs~DGtI~lWD 545 (1341)
|+++.||.|++||
T Consensus 491 at~~w~G~Ikiwd 503 (503)
T KOG0282|consen 491 ATCGWDGLIKIWD 503 (503)
T ss_pred EecccCceeEecC
Confidence 9999999999997
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=223.00 Aligned_cols=213 Identities=12% Similarity=0.168 Sum_probs=172.1
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC---eEEEEecCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR---SVVLWIDPDP 131 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg---~~~~~l~~~~ 131 (1341)
-.++.+++|++ +|..++|+|.. |.+||||+.|.+|+||+...+ .+...+ ..+
T Consensus 5 ~~~~~~~gh~~-----------r~W~~awhp~~-------------g~ilAscg~Dk~vriw~~~~~~s~~ck~vl-d~~ 59 (312)
T KOG0645|consen 5 ILEQKLSGHKD-----------RVWSVAWHPGK-------------GVILASCGTDKAVRIWSTSSGDSWTCKTVL-DDG 59 (312)
T ss_pred eeEEeecCCCC-----------cEEEEEeccCC-------------ceEEEeecCCceEEEEecCCCCcEEEEEec-ccc
Confidence 34678999999 99999999852 678999999999999998753 344444 357
Q ss_pred CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC--eEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEe
Q 000707 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA--SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1341)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg--~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~ 209 (1341)
|++ .|..++|+|.+ ++||+++-|.++.||.=..+ +++-++.+|...|.|++|++ +++.||+++.|..|-+|..
T Consensus 60 hkr-sVRsvAwsp~g---~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 60 HKR-SVRSVAWSPHG---RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred chh-eeeeeeecCCC---cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEe
Confidence 888 99999999998 89999999999999986655 47888999888999999999 9999999999999999986
Q ss_pred cCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcC-CC--c
Q 000707 210 LGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ-YE--T 286 (1341)
Q Consensus 210 ~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~-t~--~ 286 (1341)
... .+|.+. .-| ..|.-.|..+.|+|.-..|+++++|++|++|+-+ .. +
T Consensus 135 ded-------dEfec~------aVL---------------~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~ 186 (312)
T KOG0645|consen 135 DED-------DEFECI------AVL---------------QEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWE 186 (312)
T ss_pred cCC-------CcEEEE------eee---------------ccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCee
Confidence 532 223221 001 1122256778999988899999999999999988 33 3
Q ss_pred eeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 287 PLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 287 ~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
+..++ .++...+..+.|.+.|..|+|++.|++|+||...
T Consensus 187 c~~tl--~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 187 CVQTL--DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEEe--cCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 45444 4455688899999999999999999999999854
No 56
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.6e-22 Score=238.78 Aligned_cols=269 Identities=12% Similarity=0.146 Sum_probs=207.1
Q ss_pred CCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 27 FGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~-~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
+-.+.|+|.. .|.++-+ +.|.+||-+=+.++..|.+|.+ +|..|.|+|+ +.++
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-----------pVRgv~FH~~--------------qplF 66 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-----------PVRGVDFHPT--------------QPLF 66 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCC-----------ccceeeecCC--------------CCeE
Confidence 5689999998 6666654 6899999999999999999999 9999999976 5789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSC 184 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~ 184 (1341)
+||++|-+|+||++.+.+++.+ +.||-. -|..+.|.+.- -.++|+|.|.+|+|||..+++|+..+++|...|.|
T Consensus 67 VSGGDDykIkVWnYk~rrclft--L~GHlD-YVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMc 140 (1202)
T KOG0292|consen 67 VSGGDDYKIKVWNYKTRRCLFT--LLGHLD-YVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMC 140 (1202)
T ss_pred EecCCccEEEEEecccceehhh--hccccc-eeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEe
Confidence 9999999999999999999877 579999 89999999866 57889999999999999999999999999999999
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhh-ccc-cCCC----CCCCCcCccceEE
Q 000707 185 IRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLEREL-SAG-AASL----SPASGLFPLYMVK 258 (1341)
Q Consensus 185 ~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~-~~~-s~~~----~p~~~~~~~~v~~ 258 (1341)
.+|.| ....+++++.|.+|++||.+|-.. -..+.. +.-.++.+.. ++. -|+. +--..+|.-.|.-
T Consensus 141 AqFhp-tEDlIVSaSLDQTVRVWDisGLRk-------k~~~pg-~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 141 AQFHP-TEDLIVSASLDQTVRVWDISGLRK-------KNKAPG-SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred eccCC-ccceEEEecccceEEEEeecchhc-------cCCCCC-CchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 99999 788999999999999999988111 000000 0000010000 000 0000 0001223334666
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
++|+|.-.-+++++.||.|++|-....+.=-+=...+|..++.++.|.|..+.+.|.++|++||+||......++++
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 89999999999999999999999875443111112345678889999999999999999999999998655444544
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.93 E-value=1.6e-23 Score=234.77 Aligned_cols=252 Identities=17% Similarity=0.228 Sum_probs=205.3
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCC
Q 000707 17 MLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1341)
++.| |...+.+++|+|++ +|++++ ++.|.+||..+++....+..|.. .|+.+.|+|+
T Consensus 4 ~~~~--h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-----------~i~~~~~~~~-------- 62 (289)
T cd00200 4 TLKG--HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-----------PVRDVAASAD-------- 62 (289)
T ss_pred Hhcc--cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-----------ceeEEEECCC--------
Confidence 3444 66789999999997 788776 78999999999988888999997 8999999986
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEE
Q 000707 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK 174 (1341)
Q Consensus 95 ~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~ 174 (1341)
+.+|++++.||.|++||+.+++.+..+ ..|.. .|.+++|++++ .++++++.++.|.+||+.+++.+..
T Consensus 63 ------~~~l~~~~~~~~i~i~~~~~~~~~~~~--~~~~~-~i~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 63 ------GTYLASGSSDKTIRLWDLETGECVRTL--TGHTS-YVSSVAFSPDG---RILSSSSRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred ------CCEEEEEcCCCeEEEEEcCcccceEEE--eccCC-cEEEEEEcCCC---CEEEEecCCCeEEEEECCCcEEEEE
Confidence 468999999999999999988777765 46666 89999999975 7888888899999999998998888
Q ss_pred EeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000707 175 YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1341)
Q Consensus 175 ~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1341)
+..+.+.+.+++|+| ++..+++++.+|.+++||+..... ...+. .+..
T Consensus 131 ~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~---------------------------~~~~ 178 (289)
T cd00200 131 LRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC----VATLT---------------------------GHTG 178 (289)
T ss_pred eccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccc----ceeEe---------------------------cCcc
Confidence 887778999999999 677787777799999999753111 11110 0112
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeee
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1341)
.+..++|+|+++.+++++.++.|.+||+.+++.+..+.. +...+..+.++|++.++++++.||.|++|+..++.....
T Consensus 179 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~ 256 (289)
T cd00200 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256 (289)
T ss_pred ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEE
Confidence 466789999999999999999999999999888766532 335778888999988999988899999999987765444
Q ss_pred e
Q 000707 335 M 335 (1341)
Q Consensus 335 ~ 335 (1341)
+
T Consensus 257 ~ 257 (289)
T cd00200 257 L 257 (289)
T ss_pred c
Confidence 4
No 58
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=227.77 Aligned_cols=258 Identities=17% Similarity=0.267 Sum_probs=200.2
Q ss_pred CCCcEEEEeCCCCcEEEEEe--ecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCC
Q 000707 537 QSGAVDVVDVSANAVTASFS--VHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPE 612 (1341)
Q Consensus 537 ~DGtI~lWDl~tg~~~~~l~--~H~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~ 612 (1341)
..|.+.|-|+..++-+.++. --...+.+++|++.. .+++++. |+.++|||+. -...+++.++. |
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G----------DGSLrl~d~~-~~s~Pi~~~kE-H 103 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG----------DGSLRLFDLT-MPSKPIHKFKE-H 103 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec----------CceEEEeccC-CCCcchhHHHh-h
Confidence 36889999986444444432 234678999999864 5555544 3589999953 33457887776 8
Q ss_pred CCCeEEEEECCC-CCEEEEEECCCcEEEEeccCCCceeeeccCc---eEEEEEcCCCCCCCCCCCCCcccccccCCCCCc
Q 000707 613 RAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIMLRSLALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKAD 688 (1341)
Q Consensus 613 ~~~I~~i~~Spd-G~~Las~s~D~~I~vWDl~~t~~~l~~l~~~---v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i 688 (1341)
+..|.++.+++. ++.++++|.|++||+||. ..++.++++.++ |....|+|.
T Consensus 104 ~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~-~r~~Sv~Tf~gh~~~Iy~a~~sp~------------------------ 158 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFLTSSWDGTIKLWDP-NRPNSVQTFNGHNSCIYQAAFSPH------------------------ 158 (311)
T ss_pred hhheEEeccccccceeEEeeccCCceEeecC-CCCcceEeecCCccEEEEEecCCC------------------------
Confidence 889999999984 566788899999999999 577778877643 566788864
Q ss_pred cCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec--CCeeecccCCCCCCccccccceEEEEee---
Q 000707 689 TTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY--- 763 (1341)
Q Consensus 689 ~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~--- 763 (1341)
....|++++.||++++||++ |+.+. + ..|...|.|+.|
T Consensus 159 ---------------------------~~nlfas~Sgd~~l~lwdvr~~gk~~~-----i-----~ah~~Eil~cdw~ky 201 (311)
T KOG0277|consen 159 ---------------------------IPNLFASASGDGTLRLWDVRSPGKFMS-----I-----EAHNSEILCCDWSKY 201 (311)
T ss_pred ---------------------------CCCeEEEccCCceEEEEEecCCCceeE-----E-----EeccceeEeeccccc
Confidence 13678999999999999994 33321 1 246678999999
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccc
Q 000707 764 RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQ 841 (1341)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~ 841 (1341)
+..+|++|+.|+.||+||++.-+ +..+.||.-.|++|+|||... ..||++++|-|+||||...++.+..+. .
T Consensus 202 ~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~-----~lLaSasYDmT~riw~~~~~ds~~e~~-~ 275 (311)
T KOG0277|consen 202 NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA-----SLLASASYDMTVRIWDPERQDSAIETV-D 275 (311)
T ss_pred CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh-----hHhhhccccceEEecccccchhhhhhh-h
Confidence 77899999999999999998754 567899999999999999843 579999999999999998776554443 3
Q ss_pred CCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEc
Q 000707 842 PQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1341)
Q Consensus 842 gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv 881 (1341)
.|+ ..|.+++|++- ++-++|+.+.|+.+.||+-
T Consensus 276 ~Ht--EFv~g~Dws~~-----~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 276 HHT--EFVCGLDWSLF-----DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccc--eEEeccccccc-----cCceeeecccccceeeecc
Confidence 454 67999999986 3337899999999999984
No 59
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=6.4e-24 Score=228.22 Aligned_cols=209 Identities=11% Similarity=0.157 Sum_probs=175.3
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000707 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1341)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~ 135 (1341)
.+-.|++|++ .|..++|+|+ |..||||+.|..|.+|++. |.+.....+.+|++
T Consensus 39 p~m~l~gh~g-----------eI~~~~F~P~--------------gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkgHsg- 91 (338)
T KOG0265|consen 39 PIMLLPGHKG-----------EIYTIKFHPD--------------GSCFASGGSDRAIVLWNVY-GDCENFWVLKGHSG- 91 (338)
T ss_pred hhhhcCCCcc-----------eEEEEEECCC--------------CCeEeecCCcceEEEEecc-ccccceeeeccccc-
Confidence 3456889999 9999999986 5789999999999999974 44444444679999
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~ 215 (1341)
.|.++.|.+|+ ..|.+++.|.+|+.||+++|+++.++..|..-++.+.-.-+....+++++.||++++||.+.+..
T Consensus 92 AVM~l~~~~d~---s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~- 167 (338)
T KOG0265|consen 92 AVMELHGMRDG---SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA- 167 (338)
T ss_pred eeEeeeeccCC---CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-
Confidence 99999999987 78999999999999999999999999998888888775556678899999999999999754321
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCC
Q 000707 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1341)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1341)
.|.+ + ....+.+++|.-++.++.+++-|+.|++||+..+..+.++. +
T Consensus 168 ---~~t~------------~----------------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls--G 214 (338)
T KOG0265|consen 168 ---IKTF------------E----------------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS--G 214 (338)
T ss_pred ---hhcc------------c----------------cceeEEEEEecccccceeeccccCceeeeccccCcceEEee--c
Confidence 1111 0 11246788999999999999999999999999888887665 5
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
+..++..+..+|+|.++.+-+.|.+|++||++.
T Consensus 215 h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 215 HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred ccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 568899999999999999999999999999874
No 60
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=6.1e-24 Score=231.90 Aligned_cols=303 Identities=15% Similarity=0.134 Sum_probs=230.2
Q ss_pred CCCccccc----cccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEE
Q 000707 8 PADSWDCN----FMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAV 81 (1341)
Q Consensus 8 ~~~~~~~~----~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v 81 (1341)
|.+.|-.+ +.+-| |-..|.|+|.-|.+ .+|+|+ +.+|.|||..++++..+|.||.. .|..|
T Consensus 133 ~rPeWHapwKl~rVi~g--HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-----------~vr~v 199 (460)
T KOG0285|consen 133 PRPEWHAPWKLYRVISG--HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-----------TVRGV 199 (460)
T ss_pred CCccccCcceehhhhhh--ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhh-----------eeeee
Confidence 55566655 66677 55679999999987 899886 57999999999999999999998 89999
Q ss_pred EEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeE
Q 000707 82 KWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1341)
Q Consensus 82 ~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1341)
++|+. ..+|.|++.|+.|+.||+...+.++. +.||-. +|++|+..|.- ++|++++.|.++
T Consensus 200 avS~r--------------HpYlFs~gedk~VKCwDLe~nkvIR~--YhGHlS-~V~~L~lhPTl---dvl~t~grDst~ 259 (460)
T KOG0285|consen 200 AVSKR--------------HPYLFSAGEDKQVKCWDLEYNKVIRH--YHGHLS-GVYCLDLHPTL---DVLVTGGRDSTI 259 (460)
T ss_pred eeccc--------------CceEEEecCCCeeEEEechhhhhHHH--hccccc-eeEEEeccccc---eeEEecCCcceE
Confidence 99975 47899999999999999999998887 578988 99999999976 899999999999
Q ss_pred EEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccc
Q 000707 162 SLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAG 241 (1341)
Q Consensus 162 ~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~ 241 (1341)
++||++|...+..+.+|..+|..+.|.|+|+ ++.+++.|++|++||+... |... .
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~ag-------kt~~---------t-------- 314 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAG-------KTMI---------T-------- 314 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccC-------ceeE---------e--------
Confidence 9999999999999999999999999999775 5778999999999998552 2211 0
Q ss_pred cCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcE
Q 000707 242 AASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKL 321 (1341)
Q Consensus 242 s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI 321 (1341)
...+...+.+++.+|.-...++++ ...|.-|++..|..+..+. ++...+..+.. -+.+++++|+++|+|
T Consensus 315 -------lt~hkksvral~lhP~e~~fASas-~dnik~w~~p~g~f~~nls--gh~~iintl~~-nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 315 -------LTHHKKSVRALCLHPKENLFASAS-PDNIKQWKLPEGEFLQNLS--GHNAIINTLSV-NSDGVLVSGGDNGSI 383 (460)
T ss_pred -------eecccceeeEEecCCchhhhhccC-CccceeccCCccchhhccc--cccceeeeeee-ccCceEEEcCCceEE
Confidence 112233466778999755545444 4568899999998887644 33344444433 345589999999999
Q ss_pred EEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccc
Q 000707 322 SIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSK 401 (1341)
Q Consensus 322 ~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1341)
..||.++|...+.. +. ...-|.+.....|++..| +-.|
T Consensus 384 ~fwdwksg~nyQ~~---~t-~vqpGSl~sEagI~as~f--------------------------------------Dktg 421 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRG---QT-IVQPGSLESEAGIFASCF--------------------------------------DKTG 421 (460)
T ss_pred EEEecCcCcccccc---cc-cccCCccccccceeEEee--------------------------------------cccC
Confidence 99999998643322 11 000122111112333222 2237
Q ss_pred cEEEEEEcCCeEEEEEcccc
Q 000707 402 THLISISDDGKVWNWLLTAE 421 (1341)
Q Consensus 402 ~~las~s~DG~I~lWdl~~~ 421 (1341)
.+|+++..|.+|++|.-...
T Consensus 422 ~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 422 SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred ceEEeccCCcceEEEecccc
Confidence 89999999999999975443
No 61
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.1e-24 Score=237.75 Aligned_cols=283 Identities=17% Similarity=0.204 Sum_probs=217.8
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEeecCCCeEEEEEcCCCc
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA---VTASFSVHNGTVRGLRWLGNSR 572 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~---~~~~l~~H~~~V~~l~fs~d~~ 572 (1341)
.++.|+..|+-+.|++ +|++||+|+.|.|..||++.... +.+++.+|..+|.-|.|+||.+
T Consensus 219 il~~htdEVWfl~FS~----------------nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr 282 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSH----------------NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR 282 (519)
T ss_pred hHhhCCCcEEEEEEcC----------------CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC
Confidence 4667999999999998 69999999999999999986543 5789999999999999999885
Q ss_pred -EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee
Q 000707 573 -LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1341)
Q Consensus 573 -llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~ 651 (1341)
+++++++. .+++||+.+|..+ +.....+...+.+++|.|||..+++|+.|+++-.||+ .|..+..
T Consensus 283 yLlaCg~~e----------~~~lwDv~tgd~~--~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl--Dgn~~~~ 348 (519)
T KOG0293|consen 283 YLLACGFDE----------VLSLWDVDTGDLR--HLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDL--DGNILGN 348 (519)
T ss_pred eEEecCchH----------heeeccCCcchhh--hhcccCcCCCcceeEEccCCceeEecCCCCcEEEecC--Ccchhhc
Confidence 55665553 5899999999843 3333335578899999999999999999999999998 4544432
Q ss_pred ccC----ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCC
Q 000707 652 LAL----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG 727 (1341)
Q Consensus 652 l~~----~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg 727 (1341)
.+. .+..++.+ ++++.+.....|.
T Consensus 349 W~gvr~~~v~dlait----------------------------------------------------~Dgk~vl~v~~d~ 376 (519)
T KOG0293|consen 349 WEGVRDPKVHDLAIT----------------------------------------------------YDGKYVLLVTVDK 376 (519)
T ss_pred ccccccceeEEEEEc----------------------------------------------------CCCcEEEEEeccc
Confidence 221 12233333 2356677778999
Q ss_pred cEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCc--EEEEEE
Q 000707 728 ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREG--IRRIKF 802 (1341)
Q Consensus 728 ~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~--V~~V~f 802 (1341)
.|++++.+.+.-+.. . .-...|++++. ||+++.+-=.+..|.+||++..+ .+++.||+.. |-+-+|
T Consensus 377 ~i~l~~~e~~~dr~l---i------se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCF 447 (519)
T KOG0293|consen 377 KIRLYNREARVDRGL---I------SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCF 447 (519)
T ss_pred ceeeechhhhhhhcc---c------cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEecc
Confidence 999999865432211 1 11134777666 88888888899999999999766 6789999754 444456
Q ss_pred ccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 803 SP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
--. .+.++|+|+.|+.|.||+..++.++ ..| .||. ..|..|+|+|. +|-++||||.||+||+|...
T Consensus 448 gg~-----~~~fiaSGSED~kvyIWhr~sgkll-~~L-sGHs--~~vNcVswNP~-----~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 448 GGG-----NDKFIASGSEDSKVYIWHRISGKLL-AVL-SGHS--KTVNCVSWNPA-----DPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCC-----CcceEEecCCCceEEEEEccCCcee-Eee-cCCc--ceeeEEecCCC-----CHHHhhccCCCCeEEEecCC
Confidence 433 1268999999999999999999855 355 8997 56999999997 66679999999999999865
Q ss_pred C
Q 000707 883 T 883 (1341)
Q Consensus 883 ~ 883 (1341)
.
T Consensus 514 ~ 514 (519)
T KOG0293|consen 514 D 514 (519)
T ss_pred c
Confidence 3
No 62
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=241.23 Aligned_cols=237 Identities=15% Similarity=0.230 Sum_probs=194.4
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecC-CCeEEEEEcCC-CcE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHN-GTVRGLRWLGN-SRL 573 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~-~~V~~l~fs~d-~~l 573 (1341)
.++.|.++|.++.+++ ++.++++|+.+|.|++|+..-. .++.+.+|. .+|++++|+|+ .+|
T Consensus 133 ilQaHDs~Vr~m~ws~----------------~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF 195 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSH----------------NGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKF 195 (464)
T ss_pred HhhhhcccceeEEEcc----------------CCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCcee
Confidence 3567999999999998 6899999999999999998543 445566655 99999999984 588
Q ss_pred EEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc
Q 000707 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA 653 (1341)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~ 653 (1341)
+++|.| |+|+|||..-.+ .-+.++| |.--|++++|+|..-.+|++++|.+|++||. +++.++.++.
T Consensus 196 ~t~SdD----------g~ikiWdf~~~k--ee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDp-rSg~cl~tlh 261 (464)
T KOG0284|consen 196 LTCSDD----------GTIKIWDFRMPK--EERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDP-RSGSCLATLH 261 (464)
T ss_pred EEecCC----------CeEEEEeccCCc--hhheecc-CCCCcceeccCCccceeEEccCCceeEeecC-CCcchhhhhh
Confidence 887754 599999997765 4455666 7778999999999999999999999999999 8999987654
Q ss_pred ---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEE
Q 000707 654 ---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1341)
Q Consensus 654 ---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~ 730 (1341)
..|.++.|.|. +..|++++.|..++
T Consensus 262 ~HKntVl~~~f~~n----------------------------------------------------~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPN----------------------------------------------------GNWLLTGSKDQSCK 289 (464)
T ss_pred hccceEEEEEEcCC----------------------------------------------------CCeeEEccCCceEE
Confidence 34678888754 36789999999999
Q ss_pred EEEecC-CeeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCc-eeee-ccCCCcEEEEEEcc
Q 000707 731 VFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGH-SSQF-STHREGIRRIKFSP 804 (1341)
Q Consensus 731 vwdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg~-~~~l-~gH~~~V~~V~fSP 804 (1341)
++|++. +.++. +.+|...|.+++| .-.++++|+.||.|..|.+...+ +-.+ .+|.+.|.+++|+|
T Consensus 290 v~DiR~mkEl~~---------~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP 360 (464)
T KOG0284|consen 290 VFDIRTMKELFT---------YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP 360 (464)
T ss_pred EEehhHhHHHHH---------hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc
Confidence 999973 22221 2368888999999 66799999999999999998444 3333 78999999999999
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECC
Q 000707 805 VVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1341)
Q Consensus 805 ~~~gd~~~~~Las~s~DgtI~IWDl~ 830 (1341)
- | -.|++++.|.+++.|.-.
T Consensus 361 l--G----hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 361 L--G----HILATGSNDRTVRFWTRN 380 (464)
T ss_pred c--c----eeEeecCCCcceeeeccC
Confidence 9 4 468999999999999643
No 63
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=8.5e-25 Score=234.81 Aligned_cols=279 Identities=16% Similarity=0.262 Sum_probs=222.6
Q ss_pred cccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCC
Q 000707 396 TLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRN 475 (1341)
Q Consensus 396 ~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1341)
.|+++|..|+++|.||-|.+|+..+++..+-+ .|... |+
T Consensus 220 ~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL---------------kYQAq----------------d~---------- 258 (508)
T KOG0275|consen 220 RFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL---------------KYQAQ----------------DN---------- 258 (508)
T ss_pred eeCCCCceEeeccccceeeeehhccchhhhhh---------------hhhhh----------------cc----------
Confidence 34556889999999999999999988753211 01000 00
Q ss_pred CCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEE
Q 000707 476 RPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASF 555 (1341)
Q Consensus 476 ~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l 555 (1341)
|- -+..+|.|+.|+. +...||+|+.||.|+||.+.+|.|++.|
T Consensus 259 ---------------fM------Mmd~aVlci~FSR----------------DsEMlAsGsqDGkIKvWri~tG~ClRrF 301 (508)
T KOG0275|consen 259 ---------------FM------MMDDAVLCISFSR----------------DSEMLASGSQDGKIKVWRIETGQCLRRF 301 (508)
T ss_pred ---------------ee------ecccceEEEeecc----------------cHHHhhccCcCCcEEEEEEecchHHHHh
Confidence 00 1457899999997 5789999999999999999999999999
Q ss_pred e-ecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEEC
Q 000707 556 S-VHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR 633 (1341)
Q Consensus 556 ~-~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~ 633 (1341)
. +|+..|+++.|+.|+ .++|+++| .++++--+.+|+ ++..++| |.+.|+...|++||.++++++.
T Consensus 302 drAHtkGvt~l~FSrD~SqiLS~sfD----------~tvRiHGlKSGK--~LKEfrG-HsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 302 DRAHTKGVTCLSFSRDNSQILSASFD----------QTVRIHGLKSGK--CLKEFRG-HSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred hhhhccCeeEEEEccCcchhhccccc----------ceEEEeccccch--hHHHhcC-ccccccceEEcCCCCeEEEecC
Confidence 6 999999999999887 67776665 489999999998 7777777 8899999999999999999999
Q ss_pred CCcEEEEeccCCCceeeeccC-----ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCC
Q 000707 634 DAPVEVWAMTKNPIMLRSLAL-----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDAS 708 (1341)
Q Consensus 634 D~~I~vWDl~~t~~~l~~l~~-----~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 708 (1341)
|++|+||+. ++..|+.+++. +++++-.-
T Consensus 369 DgtvkvW~~-KtteC~~Tfk~~~~d~~vnsv~~~---------------------------------------------- 401 (508)
T KOG0275|consen 369 DGTVKVWHG-KTTECLSTFKPLGTDYPVNSVILL---------------------------------------------- 401 (508)
T ss_pred CccEEEecC-cchhhhhhccCCCCcccceeEEEc----------------------------------------------
Confidence 999999999 89999887762 12221111
Q ss_pred CCCccCCCCCeEEEEecCCcEEEEEecCCeeecccC-CCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-
Q 000707 709 SEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRP-KWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH- 786 (1341)
Q Consensus 709 ~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~-~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~- 786 (1341)
....++++++...+++++.++.|+.++.+.. +.. |.+-...+++.+|.++.+.+.|+.+++|.+.+|.
T Consensus 402 -----PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkRE-----gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 402 -----PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKRE-----GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred -----CCCCceEEEEcCCCeEEEEeccceEEeeeccCCcc-----CCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 1225889999999999999999988875421 111 2233334566799999999999999999999998
Q ss_pred eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEE
Q 000707 787 SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1341)
Q Consensus 787 ~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWD 828 (1341)
-++++.|...|-.++-+|.. ..||+-+.||.+++|.
T Consensus 472 E~tl~VhEkdvIGl~HHPHq------NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLPVHEKDVIGLTHHPHQ------NLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeeecccccccccccCccc------chhhhhcccchhhhcC
Confidence 57889999999999999982 5688889999999994
No 64
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=2.3e-21 Score=219.66 Aligned_cols=505 Identities=16% Similarity=0.196 Sum_probs=323.8
Q ss_pred CCCCCCceEeCCCC-eEEEEc--C-------CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 23 SRNNFGSADLSPSG-LLAFAS--G-------SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs--~-------~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
|.+.+.|++.+|+- ++|+|- + -+|+|||..+.+.+++|..-.. -|++|+||+-+
T Consensus 103 H~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-----------GV~~vaFsk~~----- 166 (626)
T KOG2106|consen 103 HNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-----------GVTCVAFSKIN----- 166 (626)
T ss_pred CCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-----------cceeeeecccC-----
Confidence 45557799999998 788763 1 2699999999999999875444 79999999853
Q ss_pred CCCCCCCCCcEEEEEeC--CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe
Q 000707 93 LSTEPGSSHLLLAAADR--HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS 170 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~--dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~ 170 (1341)
.|.+|+.-+. +...-|||...+...... ..... .|....|.|.++ .++++++ .+.+..|+..+|.
T Consensus 167 -------~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v--k~sne-~v~~a~FHPtd~--nliit~G-k~H~~Fw~~~~~~ 233 (626)
T KOG2106|consen 167 -------GGSLLCAVDDSNPHMLSVWDWQKKAKLGPV--KTSNE-VVFLATFHPTDP--NLIITCG-KGHLYFWTLRGGS 233 (626)
T ss_pred -------CCceEEEecCCCccccchhhchhhhccCcc--eeccc-eEEEEEeccCCC--cEEEEeC-CceEEEEEccCCc
Confidence 4677777654 456789999877655442 22234 688889999873 6777665 7899999998776
Q ss_pred EEEEE---eC-CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCC
Q 000707 171 CMWKY---DA-SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLS 246 (1341)
Q Consensus 171 ~i~~~---~~-~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~ 246 (1341)
...+. .. ....|.|++|.+ ++ .++++..+|+|.+|+..+. .+ .+.
T Consensus 234 l~k~~~~fek~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~---~~-~k~------------------------- 282 (626)
T KOG2106|consen 234 LVKRQGIFEKREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTN---RI-SKQ------------------------- 282 (626)
T ss_pred eEEEeeccccccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCc---eE-EeE-------------------------
Confidence 54332 22 135789999998 54 4667888899999975221 11 011
Q ss_pred CCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEec
Q 000707 247 PASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 247 p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1341)
..+|+..|.+++...+| .|++++-||.|..||-. -+.++.+.++...+++..++.-. ++ |+.|-.-..|--=..
T Consensus 283 --~~aH~ggv~~L~~lr~G-tllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 283 --VHAHDGGVFSLCMLRDG-TLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGK-GD-ILVGTTRNFILQGTL 356 (626)
T ss_pred --eeecCCceEEEEEecCc-cEeecCccceEEecccc-ccccccccCchhcCCeeEEecCC-Cc-EEEeeccceEEEeee
Confidence 01355567788889998 47779999999999944 44556667776667777776532 22 555544333321112
Q ss_pred cCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEE
Q 000707 327 KEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLIS 406 (1341)
Q Consensus 327 ~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las 406 (1341)
..+-++.++ |+ +.+++..+.-|+ ...+++
T Consensus 357 ~~~f~~~v~----------gh---~delwgla~hps--------------------------------------~~q~~T 385 (626)
T KOG2106|consen 357 ENGFTLTVQ----------GH---GDELWGLATHPS--------------------------------------KNQLLT 385 (626)
T ss_pred cCCceEEEE----------ec---ccceeeEEcCCC--------------------------------------hhheee
Confidence 222111111 00 002222222221 348999
Q ss_pred EEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccc
Q 000707 407 ISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQAD 486 (1341)
Q Consensus 407 ~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (1341)
.+.|+.+++|+ ..+.+- .+
T Consensus 386 ~gqdk~v~lW~--~~k~~w--------------------------------------t~--------------------- 404 (626)
T KOG2106|consen 386 CGQDKHVRLWN--DHKLEW--------------------------------------TK--------------------- 404 (626)
T ss_pred ccCcceEEEcc--CCceeE--------------------------------------EE---------------------
Confidence 99999999998 211100 00
Q ss_pred cceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEE
Q 000707 487 MSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLR 566 (1341)
Q Consensus 487 ~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~ 566 (1341)
+ ...++-|+.|+| .| .+|.|+..|...|.|.++..++..-.- +.++..++
T Consensus 405 ------~------~~d~~~~~~fhp----------------sg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ 454 (626)
T KOG2106|consen 405 ------I------IEDPAECADFHP----------------SG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVR 454 (626)
T ss_pred ------E------ecCceeEeeccC----------------cc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEE
Confidence 0 124677889998 35 999999999999999998655443333 78999999
Q ss_pred EcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC
Q 000707 567 WLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP 646 (1341)
Q Consensus 567 fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~ 646 (1341)
|+|+|.+++ .|+.||.|.|+-+..+..+..+. ...+.++|+.+.||+|++||.+-+.|-.|-.|.. ...
T Consensus 455 ysp~G~~lA---------vgs~d~~iyiy~Vs~~g~~y~r~-~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~-~~~ 523 (626)
T KOG2106|consen 455 YSPDGAFLA---------VGSHDNHIYIYRVSANGRKYSRV-GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKP-SEC 523 (626)
T ss_pred EcCCCCEEE---------EecCCCeEEEEEECCCCcEEEEe-eeecCceeEEeeecCCCceEEeccCceEEEEEcc-ccC
Confidence 999998885 45567889999885433333332 2334589999999999999999999999999954 222
Q ss_pred ceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecC
Q 000707 647 IMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALAN 726 (1341)
Q Consensus 647 ~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~D 726 (1341)
..+.. +..+.|........+. ..-.++|. ++. ......+...+|++...
T Consensus 524 ~~~ts----~kDvkW~t~~c~lGF~--------------v~g~s~~t--~i~-----------a~~rs~~~~~lA~gdd~ 572 (626)
T KOG2106|consen 524 KQITS----VKDVKWATYTCTLGFE--------------VFGGSDGT--DIN-----------AVARSHCEKLLASGDDF 572 (626)
T ss_pred cccce----ecceeeeeeEEEEEEE--------------EecccCCc--hHH-----------HhhhhhhhhhhhccccC
Confidence 22222 2234443110000000 00000000 000 00111335678899999
Q ss_pred CcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEEC
Q 000707 727 GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDV 782 (1341)
Q Consensus 727 g~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl 782 (1341)
|.|++|..-=.+ ++-+.+...+|.+.|++++| +..++++.+.|..|..|++
T Consensus 573 g~v~lf~yPc~s-----~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 573 GKVHLFSYPCSS-----PRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ceEEEEccccCC-----CcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 999998752111 12222334478888999999 5567777669999999986
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.92 E-value=2.1e-22 Score=263.60 Aligned_cols=244 Identities=12% Similarity=0.132 Sum_probs=189.1
Q ss_pred CCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc----c----eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 23 SRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL----Q----LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~----~----~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
|...+.+++|+|+| ++|+|+ ++.|.|||..+. . .+..+.+|. .|.+++|+|.
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~------------~v~~l~~~~~------ 543 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS------------KLSGICWNSY------ 543 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC------------ceeeEEeccC------
Confidence 45568899999998 787765 679999997542 1 122333332 7999999974
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEE
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM 172 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i 172 (1341)
.+.+||+|+.||+|+|||+.+++.+..+ .+|.+ .|.+++|+|.+ +.+|++++.|++|++||+.++.++
T Consensus 544 -------~~~~las~~~Dg~v~lWd~~~~~~~~~~--~~H~~-~V~~l~~~p~~--~~~L~Sgs~Dg~v~iWd~~~~~~~ 611 (793)
T PLN00181 544 -------IKSQVASSNFEGVVQVWDVARSQLVTEM--KEHEK-RVWSIDYSSAD--PTLLASGSDDGSVKLWSINQGVSI 611 (793)
T ss_pred -------CCCEEEEEeCCCeEEEEECCCCeEEEEe--cCCCC-CEEEEEEcCCC--CCEEEEEcCCCEEEEEECCCCcEE
Confidence 3678999999999999999999888774 67888 99999999743 279999999999999999999988
Q ss_pred EEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcC
Q 000707 173 WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLF 252 (1341)
Q Consensus 173 ~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~ 252 (1341)
..+.. ...+.++.|.+.++..|++++.||.|++||+..... . ... + ..+
T Consensus 612 ~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~-~--~~~------------~---------------~~h 660 (793)
T PLN00181 612 GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL-P--LCT------------M---------------IGH 660 (793)
T ss_pred EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc-c--ceE------------e---------------cCC
Confidence 87776 468899999776899999999999999999753110 0 000 0 112
Q ss_pred ccceEEEEEccCCCceEEEEcCCeEEEEEcCCC------ceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEec
Q 000707 253 PLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE------TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 253 ~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~------~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1341)
...+..+.|+ ++..+++++.|++|+|||+..+ ..+.++. ++......+.++|++.+|++|+.||+|++|+.
T Consensus 661 ~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 661 SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--GHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 2346778897 6789999999999999999753 3455544 33345556778899999999999999999998
Q ss_pred cCCc
Q 000707 327 KEGE 330 (1341)
Q Consensus 327 ~~g~ 330 (1341)
....
T Consensus 738 ~~~~ 741 (793)
T PLN00181 738 AFPM 741 (793)
T ss_pred CCCC
Confidence 7554
No 66
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=211.27 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=208.6
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC-cEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~-~llS 575 (1341)
|..+.++|.++++.- +|++..+.+.|.+||+||...|.+++++.+|...|..++.+.|+ ++.|
T Consensus 13 l~~~qgaV~avryN~----------------dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s 76 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNV----------------DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFAS 76 (307)
T ss_pred ecccccceEEEEEcc----------------CCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccccc
Confidence 455788999999876 69999999999999999999999999999999999999987766 6665
Q ss_pred EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC--ceeeecc
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP--IMLRSLA 653 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~--~~l~~l~ 653 (1341)
++. |..+++||+.||+ .+|.+++ |...|+.|+|+.+...+++|+.|.++++||. ++. +.++.+.
T Consensus 77 ~Gg----------Dk~v~vwDV~TGk--v~Rr~rg-H~aqVNtV~fNeesSVv~SgsfD~s~r~wDC-RS~s~ePiQild 142 (307)
T KOG0316|consen 77 CGG----------DKAVQVWDVNTGK--VDRRFRG-HLAQVNTVRFNEESSVVASGSFDSSVRLWDC-RSRSFEPIQILD 142 (307)
T ss_pred CCC----------CceEEEEEcccCe--eeeeccc-ccceeeEEEecCcceEEEeccccceeEEEEc-ccCCCCccchhh
Confidence 444 4589999999999 7888887 8899999999999999999999999999998 442 1222221
Q ss_pred CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEE
Q 000707 654 LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFE 733 (1341)
Q Consensus 654 ~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwd 733 (1341)
=. .||..++ +-....++.++.||+++.||
T Consensus 143 -------ea---------------------------~D~V~Si-----------------~v~~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 143 -------EA---------------------------KDGVSSI-----------------DVAEHEIVAGSVDGTVRTYD 171 (307)
T ss_pred -------hh---------------------------cCceeEE-----------------EecccEEEeeccCCcEEEEE
Confidence 00 0111111 11123367889999999999
Q ss_pred ecCCee-ecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCC
Q 000707 734 VHGRRI-RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 734 v~~~~v-~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd 809 (1341)
++..++ .|+ .|| +|++++| ||+.+..++.|++|++-|-.||+ +..+.||+..=.++...-..
T Consensus 172 iR~G~l~sDy---------~g~--pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q--- 237 (307)
T KOG0316|consen 172 IRKGTLSSDY---------FGH--PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ--- 237 (307)
T ss_pred eecceeehhh---------cCC--cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc---
Confidence 964443 332 133 4888888 99999999999999999999999 67789999877766543321
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+...+++++.||.|.+||+.....+ ..+ ..+. ...|.+++++|. -.. +.++ .++.+..|--.
T Consensus 238 -sdthV~sgSEDG~Vy~wdLvd~~~~-sk~-~~~~-~v~v~dl~~hp~----~~~--f~~A-~~~~~~~~~~~ 299 (307)
T KOG0316|consen 238 -SDTHVFSGSEDGKVYFWDLVDETQI-SKL-SVVS-TVIVTDLSCHPT----MDD--FITA-TGHGDLFWYQE 299 (307)
T ss_pred -cceeEEeccCCceEEEEEeccceee-eee-ccCC-ceeEEeeecccC----ccc--eeEe-cCCceeceeeh
Confidence 1157899999999999999887633 333 2222 234899999997 232 2333 34556667533
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=8.5e-23 Score=249.80 Aligned_cols=260 Identities=18% Similarity=0.243 Sum_probs=211.6
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEE-EeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEE
Q 000707 530 PLVALGTQSGAVDVVDVSANAVTAS-FSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1341)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~-l~~H~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1341)
..+.+|+.|++|++||..++..+.. +.||.+.|.++++.. +..+++++.| .++++||..+|. +..+
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D----------~t~rvWd~~sg~--C~~~ 286 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTD----------KTERVWDCSTGE--CTHS 286 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecC----------CcEEeEecCCCc--EEEE
Confidence 5788999999999999999998887 999999999999975 4577776655 499999999999 6777
Q ss_pred eccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 608 l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
+.+ |...|.++..- +.++++|++|.+|+||++ .++.+++.+.. +|.++...
T Consensus 287 l~g-h~stv~~~~~~--~~~~~sgs~D~tVkVW~v-~n~~~l~l~~~h~~~V~~v~~~---------------------- 340 (537)
T KOG0274|consen 287 LQG-HTSSVRCLTID--PFLLVSGSRDNTVKVWDV-TNGACLNLLRGHTGPVNCVQLD---------------------- 340 (537)
T ss_pred ecC-CCceEEEEEcc--CceEeeccCCceEEEEec-cCcceEEEeccccccEEEEEec----------------------
Confidence 777 88888877765 457888999999999999 68998887763 33333221
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEeec
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYR 764 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~d 764 (1341)
...+++++.||+|++|++...++.. ++.||.+.|.++.++
T Consensus 341 --------------------------------~~~lvsgs~d~~v~VW~~~~~~cl~--------sl~gH~~~V~sl~~~ 380 (537)
T KOG0274|consen 341 --------------------------------EPLLVSGSYDGTVKVWDPRTGKCLK--------SLSGHTGRVYSLIVD 380 (537)
T ss_pred --------------------------------CCEEEEEecCceEEEEEhhhceeee--------eecCCcceEEEEEec
Confidence 3568899999999999996433311 245899999999999
Q ss_pred C-CEEEEEeCCCcEEEEECCCC-c-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccccc
Q 000707 765 L-PHVVMGDRSGNIRWWDVTTG-H-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQ 841 (1341)
Q Consensus 765 g-~~LasGs~DgtI~lWDl~tg-~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~ 841 (1341)
+ +++++|+.|++|++||+.++ + +.++.+|.+-|..+.+.. .+|++++.|++|++||..+++++ .++ .
T Consensus 381 ~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~--------~~Lvs~~aD~~Ik~WD~~~~~~~-~~~-~ 450 (537)
T KOG0274|consen 381 SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRD--------NFLVSSSADGTIKLWDAEEGECL-RTL-E 450 (537)
T ss_pred CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccccc--------ceeEeccccccEEEeecccCcee-eee-c
Confidence 8 99999999999999999998 6 678999999998887653 47999999999999999999854 455 3
Q ss_pred C-CCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCcee
Q 000707 842 P-QFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKI 887 (1341)
Q Consensus 842 g-h~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~~ 887 (1341)
+ |. ..|..+.+.. . .+++++.||++++||+++++.+
T Consensus 451 ~~~~--~~v~~l~~~~-------~-~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 451 GRHV--GGVSALALGK-------E-EILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred cCCc--ccEEEeecCc-------c-eEEEEecCCeeEEEecccCchh
Confidence 4 33 4578777752 2 4678999999999999998664
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=8.7e-23 Score=249.73 Aligned_cols=236 Identities=22% Similarity=0.274 Sum_probs=196.6
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
+.||.+.|+++++.- .+.++++|+.|.+++|||..+|.+...+.+|.+.|+++...+. .+++
T Consensus 245 l~GH~g~V~~l~~~~----------------~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~-~~~s- 306 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS----------------GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF-LLVS- 306 (537)
T ss_pred ccCCCCCceeEEEec----------------CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc-eEee-
Confidence 457899999999874 3679999999999999999999999999999999999876442 3333
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc-
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP- 655 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~- 655 (1341)
|+.|++|++|++.+|. .++.+.+ |..+|+++..+ +.++++|+.|++|+|||+ .++++++++.++
T Consensus 307 ---------gs~D~tVkVW~v~n~~--~l~l~~~-h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~-~~~~cl~sl~gH~ 371 (537)
T KOG0274|consen 307 ---------GSRDNTVKVWDVTNGA--CLNLLRG-HTGPVNCVQLD--EPLLVSGSYDGTVKVWDP-RTGKCLKSLSGHT 371 (537)
T ss_pred ---------ccCCceEEEEeccCcc--eEEEecc-ccccEEEEEec--CCEEEEEecCceEEEEEh-hhceeeeeecCCc
Confidence 4556799999999988 7777777 89999999998 889999999999999999 699999988743
Q ss_pred --eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCC-CeEEEEecCCcEEEE
Q 000707 656 --FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTS-ESFAFALANGALGVF 732 (1341)
Q Consensus 656 --v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~-e~la~~~~Dg~I~vw 732 (1341)
|+++.+. . +.+.+++.|++|++|
T Consensus 372 ~~V~sl~~~------------------------------------------------------~~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 372 GRVYSLIVD------------------------------------------------------SENRLLSGSLDTTIKVW 397 (537)
T ss_pred ceEEEEEec------------------------------------------------------CcceEEeeeeccceEee
Confidence 3443322 2 567899999999999
Q ss_pred EecCC-eeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeecc-CCCcEEEEEEccCCCCC
Q 000707 733 EVHGR-RIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFST-HREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 733 dv~~~-~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~g-H~~~V~~V~fSP~~~gd 809 (1341)
|+++. +... .+.+|...+..+.+.+++|++++.||+|++||..+++ .+++.+ |.+.|..+++. .
T Consensus 398 dl~~~~~c~~--------tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~---- 464 (537)
T KOG0274|consen 398 DLRTKRKCIH--------TLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-K---- 464 (537)
T ss_pred cCCchhhhhh--------hhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-c----
Confidence 99776 3322 2336777888888999999999999999999999988 567777 78999999986 2
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCcc
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l 835 (1341)
..+++++.|+++++||+++++..
T Consensus 465 ---~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 465 ---EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ---ceEEEEecCCeeEEEecccCchh
Confidence 35888999999999999998843
No 69
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=3.7e-20 Score=214.23 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=118.6
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 26 NFGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
.++.++|-||| -|..++++.+.|+|+..|.++++|++|++ .|.+|+||.| |.++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKD-----------tVycVAys~d--------------GkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-----------TVYCVAYAKD--------------GKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccc-----------eEEEEEEccC--------------Ccee
Confidence 57889999999 66677889999999999999999999999 9999999976 6899
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEE
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSC 184 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~ 184 (1341)
|||+.|..|+||.-.--..+ . ..|.. .|+++.|.|-. ..|++++- +..-+|.+... .+.++.. ...+.|
T Consensus 69 ASG~aDK~VI~W~~klEG~L-k---YSH~D-~IQCMsFNP~~---h~LasCsL-sdFglWS~~qK-~V~K~ks-s~R~~~ 137 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKLEGIL-K---YSHND-AIQCMSFNPIT---HQLASCSL-SDFGLWSPEQK-SVSKHKS-SSRIIC 137 (1081)
T ss_pred ccCCCceeEEEeccccccee-e---eccCC-eeeEeecCchH---HHhhhcch-hhccccChhhh-hHHhhhh-heeEEE
Confidence 99999999999996432222 2 24677 89999999986 88999874 45668987533 2333332 457788
Q ss_pred EEEcCCCCCEEEEEeCCCeEEEEEe
Q 000707 185 IRRNPFDARHFCVLGLKGLLLSVRV 209 (1341)
Q Consensus 185 ~~fsP~d~~~la~~~~dG~i~~~d~ 209 (1341)
++|.- |+..++.|-.+|+|.+-+-
T Consensus 138 CsWtn-DGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 138 CSWTN-DGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred eeecC-CCcEEEEeccCceEEeecC
Confidence 99998 9999999999999988543
No 70
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=1.6e-22 Score=223.09 Aligned_cols=243 Identities=12% Similarity=0.177 Sum_probs=186.7
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE----EEEEeecCCCeEEEEEcCCC-c
Q 000707 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV----TASFSVHNGTVRGLRWLGNS-R 572 (1341)
Q Consensus 498 ~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~----~~~l~~H~~~V~~l~fs~d~-~ 572 (1341)
.||++++.++++.-+ | ....++++|++|.++++|-...+.. ++.-.||...|-+|...+++ +
T Consensus 141 ~Ght~~ik~v~~v~~-----------n--~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 141 VGHTGPIKSVAWVIK-----------N--SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR 207 (423)
T ss_pred ecCCcceeeeEEEec-----------C--CccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe
Confidence 458888887776531 1 2345899999999999999987753 22335999999999988876 6
Q ss_pred EEEEecCCcccccCcccCeEEEEEccCC-----------------------ceeeeEEeccCCCCCeEEEEECCCCCEEE
Q 000707 573 LVSFSYSQVNEKSGGYINRLVVTCLRSG-----------------------INRAFRVLQKPERAPIRALRASSSGRYLL 629 (1341)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG-----------------------~~~~l~~l~~~~~~~I~~i~~SpdG~~La 629 (1341)
++|+ ++|++|.+|+..+. ...++.++.| |..+|.+|.|++ ...+.
T Consensus 208 ~~Sg----------S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-Ht~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 208 FCSG----------SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-HTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred EEee----------cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-cccceeeEEEcC-CCceE
Confidence 6654 45669999993221 1125555666 999999999998 66788
Q ss_pred EEECCCcEEEEeccCCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCC
Q 000707 630 ILFRDAPVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDA 707 (1341)
Q Consensus 630 s~s~D~~I~vWDl~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 707 (1341)
++++|.+|++||+ .++.++.++. ..+++++.+|.
T Consensus 276 S~SwDHTIk~WDl-etg~~~~~~~~~ksl~~i~~~~~------------------------------------------- 311 (423)
T KOG0313|consen 276 SVSWDHTIKVWDL-ETGGLKSTLTTNKSLNCISYSPL------------------------------------------- 311 (423)
T ss_pred eecccceEEEEEe-ecccceeeeecCcceeEeecccc-------------------------------------------
Confidence 9999999999999 6887766554 34555554432
Q ss_pred CCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCC
Q 000707 708 SSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTT 784 (1341)
Q Consensus 708 ~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~t 784 (1341)
..++|+++.|..|++||.+.+.- ..+..+|.||.+.|.++.| +-.++++|+.||++++||+++
T Consensus 312 ---------~~Ll~~gssdr~irl~DPR~~~g-----s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 312 ---------SKLLASGSSDRHIRLWDPRTGDG-----SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ---------cceeeecCCCCceeecCCCCCCC-----ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 35788999999999999853310 1112356799999999999 566899999999999999998
Q ss_pred Cc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECC
Q 000707 785 GH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1341)
Q Consensus 785 g~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~ 830 (1341)
-+ +..+.+|...|.++.|+.. ..|++|+.|++|+|+.-.
T Consensus 378 ~k~plydI~~h~DKvl~vdW~~~-------~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 378 TKAPLYDIAGHNDKVLSVDWNEG-------GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCcceeeccCCceEEEEeccCC-------ceEEeccCcceEEEeccc
Confidence 55 6788999999999999876 579999999999998643
No 71
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-21 Score=204.55 Aligned_cols=252 Identities=14% Similarity=0.142 Sum_probs=199.7
Q ss_pred eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCC
Q 000707 56 LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKL 135 (1341)
Q Consensus 56 ~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~ 135 (1341)
.+++|..|++ .|.+|+|.-+ |.+..+++.|.+|++|+...|.++++. .+|..
T Consensus 9 r~~~l~~~qg-----------aV~avryN~d--------------GnY~ltcGsdrtvrLWNp~rg~liktY--sghG~- 60 (307)
T KOG0316|consen 9 RLSILDCAQG-----------AVRAVRYNVD--------------GNYCLTCGSDRTVRLWNPLRGALIKTY--SGHGH- 60 (307)
T ss_pred hceeeccccc-----------ceEEEEEccC--------------CCEEEEcCCCceEEeecccccceeeee--cCCCc-
Confidence 4667889998 9999999865 688999999999999999999999995 67766
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccc
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED 215 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~ 215 (1341)
.|.+++-+.|. ..+|++++|..+.+||+.||+.+.++.+|...|+.++|+- ++..+++++.|..+++||.......
T Consensus 61 EVlD~~~s~Dn---skf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 61 EVLDAALSSDN---SKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred eeeeccccccc---cccccCCCCceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCC
Confidence 89999998876 6899999999999999999999999999999999999998 8899999999999999998664332
Q ss_pred ceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCC
Q 000707 216 EVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR 295 (1341)
Q Consensus 216 ~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~ 295 (1341)
.+ +| +.. ....+.++..+ +..|+.++.||+++.||+..|+.....-
T Consensus 137 Pi-----Qi---------lde---------------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~--- 182 (307)
T KOG0316|consen 137 PI-----QI---------LDE---------------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF--- 182 (307)
T ss_pred cc-----ch---------hhh---------------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc---
Confidence 22 11 100 01125545554 4578889999999999999998764432
Q ss_pred CccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccC
Q 000707 296 GCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLD 375 (1341)
Q Consensus 296 ~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~ 375 (1341)
..|+.++.+++|++.+..++.|++|||.|..+|+.+..+-++.. ..
T Consensus 183 -g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn-------------~e-------------------- 228 (307)
T KOG0316|consen 183 -GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKN-------------ME-------------------- 228 (307)
T ss_pred -CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccccc-------------ce--------------------
Confidence 25788999999999999999999999999999986554321100 00
Q ss_pred CCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccc
Q 000707 376 APHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEG 422 (1341)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~ 422 (1341)
|. .+|.++...++++++|+||.|.+||+..+.
T Consensus 229 --------------yk-ldc~l~qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 229 --------------YK-LDCCLNQSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred --------------ee-eeeeecccceeEEeccCCceEEEEEeccce
Confidence 11 123334445799999999999999997654
No 72
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=7.6e-23 Score=224.19 Aligned_cols=284 Identities=13% Similarity=0.211 Sum_probs=213.6
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCc
Q 000707 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR 572 (1341)
Q Consensus 493 l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~ 572 (1341)
..|+|.||..+|.+++-+|. .-..+|+|+.||.|+|||+++..+.+.|..|.+.|++|.+.. +.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~---------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~ 121 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPN---------------KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TS 121 (433)
T ss_pred chhhccccccccchhhcCcc---------------hhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cc
Confidence 46778999999999998882 235789999999999999999999999999999999999977 77
Q ss_pred EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec
Q 000707 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1341)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l 652 (1341)
+++++.| .+|+.|-+.- . +++++.+ ...+..|.-+..+..+|+++.+ |.|||. .....++.+
T Consensus 122 ~~tvgdD----------KtvK~wk~~~-~--p~~tilg--~s~~~gIdh~~~~~~FaTcGe~--i~IWD~-~R~~Pv~sm 183 (433)
T KOG0268|consen 122 FFTVGDD----------KTVKQWKIDG-P--PLHTILG--KSVYLGIDHHRKNSVFATCGEQ--IDIWDE-QRDNPVSSM 183 (433)
T ss_pred eEEecCC----------cceeeeeccC-C--cceeeec--cccccccccccccccccccCce--eeeccc-ccCCcccee
Confidence 7877665 4899998754 2 5555543 3466777777778888888764 899998 444444443
Q ss_pred c---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcE
Q 000707 653 A---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1341)
Q Consensus 653 ~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I 729 (1341)
. ..+.++.|+|- ....|+++..|++|
T Consensus 184 swG~Dti~svkfNpv---------------------------------------------------ETsILas~~sDrsI 212 (433)
T KOG0268|consen 184 SWGADSISSVKFNPV---------------------------------------------------ETSILASCASDRSI 212 (433)
T ss_pred ecCCCceeEEecCCC---------------------------------------------------cchheeeeccCCce
Confidence 3 12233333321 12357888899999
Q ss_pred EEEEecCCee-ecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEcc
Q 000707 730 GVFEVHGRRI-RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSP 804 (1341)
Q Consensus 730 ~vwdv~~~~v-~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP 804 (1341)
.+||...... +.+.. .-.-+.|+| .+-.+++|+.|.+++.+|++.-+ +..+.+|...|.+|.|||
T Consensus 213 vLyD~R~~~Pl~KVi~----------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 213 VLYDLRQASPLKKVIL----------TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred EEEecccCCccceeee----------eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 9999964432 21100 012457788 55678999999999999997643 566789999999999999
Q ss_pred CCCCCCCCCEEEEEECCCeEEEEECCCCC--ccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 805 VVPGDRSRGRIAVLFHDNTFSVFDLDSQD--PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 805 ~~~gd~~~~~Las~s~DgtI~IWDl~~~~--~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
. | +.++++|.|++||||.++.+. .+..+. ....|.++.|+-| .+ +++|||.|+.||+|...
T Consensus 283 t--G----~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~D----sk--yi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 283 T--G----QEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMD----SK--YIISGSDDGNVRLWKAK 345 (433)
T ss_pred C--c----chhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEecc----cc--EEEecCCCcceeeeecc
Confidence 9 6 789999999999999997664 122222 1356999999997 34 78999999999999987
Q ss_pred CCceec
Q 000707 883 TEKKIG 888 (1341)
Q Consensus 883 ~~~~~~ 888 (1341)
..++.+
T Consensus 346 Aseklg 351 (433)
T KOG0268|consen 346 ASEKLG 351 (433)
T ss_pred hhhhcC
Confidence 766543
No 73
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.89 E-value=3.3e-22 Score=209.49 Aligned_cols=296 Identities=12% Similarity=0.096 Sum_probs=229.5
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~ 134 (1341)
|.-.+..||+. +|.-++|||- .|+|-+|+|++.||.=.+-+-.+|..+-+| .||.+
T Consensus 5 ~~pl~c~ghtr-----------pvvdl~~s~i-----------tp~g~flisa~kd~~pmlr~g~tgdwigtf--eghkg 60 (334)
T KOG0278|consen 5 QTPLTCHGHTR-----------PVVDLAFSPI-----------TPDGYFLISASKDGKPMLRNGDTGDWIGTF--EGHKG 60 (334)
T ss_pred cCceEEcCCCc-----------ceeEEeccCC-----------CCCceEEEEeccCCCchhccCCCCCcEEee--eccCc
Confidence 34456789998 8999999985 489999999999999999999999999996 68888
Q ss_pred CCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcc
Q 000707 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE 214 (1341)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~ 214 (1341)
.|...+...+. ...|+++.|-+-++||+.||..+..+.. ...|..++|+. |...|.++|.+-.++++|+.-..
T Consensus 61 -avw~~~l~~na---~~aasaaadftakvw~a~tgdelhsf~h-khivk~~af~~-ds~~lltgg~ekllrvfdln~p~- 133 (334)
T KOG0278|consen 61 -AVWSATLNKNA---TRAASAAADFTAKVWDAVTGDELHSFEH-KHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPK- 133 (334)
T ss_pred -ceeeeecCchh---hhhhhhcccchhhhhhhhhhhhhhhhhh-hheeeeEEecc-cchhhhccchHHHhhhhhccCCC-
Confidence 88877766544 5678889999999999999998877764 66889999998 99999999999999998763310
Q ss_pred cceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecC
Q 000707 215 DEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALP 294 (1341)
Q Consensus 215 ~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~ 294 (1341)
...++ -.+++..|..+-|....+.+++.++|++|++||..+|+.+.++.+.
T Consensus 134 --App~E---------------------------~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~ 184 (334)
T KOG0278|consen 134 --APPKE---------------------------ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN 184 (334)
T ss_pred --CCchh---------------------------hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC
Confidence 00111 1234556777888888899999999999999999999999988765
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhccc
Q 000707 295 RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCL 374 (1341)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~ 374 (1341)
.++.++-.++||++|..+ .-++|+.||.++-..+..+ .|| . .|.+..+.
T Consensus 185 ---s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~-----k~P---~-----nV~SASL~-------------- 233 (334)
T KOG0278|consen 185 ---SPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSY-----KMP---C-----NVESASLH-------------- 233 (334)
T ss_pred ---CCCcceeeccCCCEEEEe-cCceeEEeccccccceeec-----cCc---c-----cccccccc--------------
Confidence 566677778999988665 4578999999865543322 122 0 12222222
Q ss_pred CCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcC
Q 000707 375 DAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMAS 454 (1341)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~ 454 (1341)
++...++.++.|+.+..+|..++..+..
T Consensus 234 ------------------------P~k~~fVaGged~~~~kfDy~TgeEi~~---------------------------- 261 (334)
T KOG0278|consen 234 ------------------------PKKEFFVAGGEDFKVYKFDYNTGEEIGS---------------------------- 261 (334)
T ss_pred ------------------------CCCceEEecCcceEEEEEeccCCceeee----------------------------
Confidence 2245888999999999999987642110
Q ss_pred cccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEE
Q 000707 455 SADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVAL 534 (1341)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAs 534 (1341)
...||.++|.||+|+| +|.+.|+
T Consensus 262 -----------------------------------------~nkgh~gpVhcVrFSP----------------dGE~yAs 284 (334)
T KOG0278|consen 262 -----------------------------------------YNKGHFGPVHCVRFSP----------------DGELYAS 284 (334)
T ss_pred -----------------------------------------cccCCCCceEEEEECC----------------CCceeec
Confidence 0235889999999999 6999999
Q ss_pred EeCCCcEEEEeCCCCc
Q 000707 535 GTQSGAVDVVDVSANA 550 (1341)
Q Consensus 535 Gs~DGtI~lWDl~tg~ 550 (1341)
|++||+||||....++
T Consensus 285 GSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCCceEEEEEecCCC
Confidence 9999999999986554
No 74
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-18 Score=203.79 Aligned_cols=504 Identities=15% Similarity=0.184 Sum_probs=317.7
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-EEeCC-CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-KYDAS-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-~~~~~-~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
+|.+|||+.+. ..||.+-.++.|.|||+..+-..- .+.++ ...|..++|. ++.+|.+.+.+|.|.-||+....
T Consensus 27 ~I~slA~s~kS---~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg~i~EwDl~~lk 101 (691)
T KOG2048|consen 27 EIVSLAYSHKS---NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EGGRLFSSGLSGSITEWDLHTLK 101 (691)
T ss_pred ceEEEEEeccC---CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cCCeEEeecCCceEEEEecccCc
Confidence 89999999876 679999999999999998775433 34443 3478899998 47888888899999999974411
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEec
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l 293 (1341)
+++.+ +. ..+.+.+++.+|.+..++.+..||.+..++...+.......+
T Consensus 102 ------~~~~~--------------d~-----------~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l 150 (691)
T KOG2048|consen 102 ------QKYNI--------------DS-----------NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSL 150 (691)
T ss_pred ------eeEEe--------------cC-----------CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeec
Confidence 11211 01 123478899999998888888999999999998888777777
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCC-ceEEEEEccCcchhhhhhhc
Q 000707 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSP-SILAVLVSQSESTIQNVAKL 372 (1341)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~-~v~a~~~~~~~~i~~~~~k~ 372 (1341)
.|..+.++++.+.|++..|+.|+.||.|++||.+++..++.. .+.. .+.....+ -|+++.+-.
T Consensus 151 ~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~-~~~~----d~l~k~~~~iVWSv~~Lr----------- 214 (691)
T KOG2048|consen 151 MRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII-TMQL----DRLSKREPTIVWSVLFLR----------- 214 (691)
T ss_pred ccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe-eecc----cccccCCceEEEEEEEee-----------
Confidence 787889999999999999999999999999999988766622 1100 01100011 234444321
Q ss_pred ccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccC
Q 000707 373 CLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSM 452 (1341)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~ 452 (1341)
..+||+|.+-|+|.+||...+......
T Consensus 215 ----------------------------d~tI~sgDS~G~V~FWd~~~gTLiqS~------------------------- 241 (691)
T KOG2048|consen 215 ----------------------------DSTIASGDSAGTVTFWDSIFGTLIQSH------------------------- 241 (691)
T ss_pred ----------------------------cCcEEEecCCceEEEEcccCcchhhhh-------------------------
Confidence 238999999999999998765432210
Q ss_pred cCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEE
Q 000707 453 ASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLV 532 (1341)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~ll 532 (1341)
.-|.+-|.+|++.+ ++..+
T Consensus 242 ---------------------------------------------~~h~adVl~Lav~~----------------~~d~v 260 (691)
T KOG2048|consen 242 ---------------------------------------------SCHDADVLALAVAD----------------NEDRV 260 (691)
T ss_pred ---------------------------------------------hhhhcceeEEEEcC----------------CCCeE
Confidence 11456788888876 46899
Q ss_pred EEEeCCCcEEEEeCCCCcE----EEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 533 ALGTQSGAVDVVDVSANAV----TASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 533 AsGs~DGtI~lWDl~tg~~----~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
.+++.|+.|.-+...++.- ......|...|++++..++ .+++ |+.|.++.+--.+.-.. .....
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~s----------gG~d~~l~i~~s~~~~~-~~h~~ 328 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALIS----------GGRDFTLAICSSREFKN-MDHRQ 328 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEe----------cceeeEEEEccccccCc-hhhhc
Confidence 9999999999999876632 2234678889999998877 4454 33344555433322100 00000
Q ss_pred ccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC-ceEEEEEcCCCCCCCCCCCCCcccccccCCCCC
Q 000707 609 QKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL-PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKA 687 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~-~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~ 687 (1341)
+ ...+-.++....-.++|+.--.+..+.+|-+. +......... ..-.+ +.++ ++
T Consensus 329 ~--~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlG-S~~~~g~~~~~~Llkl-~~k~-----------~~---------- 383 (691)
T KOG2048|consen 329 K--NLFPASDRVSVAPENRLLVLWKAHGVDLWRLG-SVILQGEYNYIHLLKL-FTKE-----------KE---------- 383 (691)
T ss_pred c--ccccccceeecCccceEEEEeccccccceecc-CcccccccChhhheee-ecCC-----------cc----------
Confidence 0 11111222222223455555556677777762 3311111110 00000 0000 00
Q ss_pred ccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec--CCe-eecccCCCCCCccccccceEEEEee-
Q 000707 688 DTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRR-IRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 688 i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~--~~~-v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
.+ +-....|+++.+|.+. =.++++|.+. ++. +..+ ...|.. .-.++.+.|
T Consensus 384 -------------nI------s~~aiSPdg~~Ia~st-~~~~~iy~L~~~~~vk~~~v-~~~~~~-----~~~a~~i~ft 437 (691)
T KOG2048|consen 384 -------------NI------SCAAISPDGNLIAIST-VSRTKIYRLQPDPNVKVINV-DDVPLA-----LLDASAISFT 437 (691)
T ss_pred -------------ce------eeeccCCCCCEEEEee-ccceEEEEeccCcceeEEEe-ccchhh-----hccceeeEEE
Confidence 00 0001124566665543 2334555542 211 1110 011110 112445555
Q ss_pred -cCCEEEEEe-CCCcEEEEECCCCc---eeee--ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccc
Q 000707 764 -RLPHVVMGD-RSGNIRWWDVTTGH---SSQF--STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA 836 (1341)
Q Consensus 764 -dg~~LasGs-~DgtI~lWDl~tg~---~~~l--~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~ 836 (1341)
|++.++..+ .+..+...++.+.. +..+ .+-...|..+..||+ | ++||+.+.+|.|.+|++++.+.
T Consensus 438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ssd--G----~yiaa~~t~g~I~v~nl~~~~~-- 509 (691)
T KOG2048|consen 438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSD--G----NYIAAISTRGQIFVYNLETLES-- 509 (691)
T ss_pred ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCC--C----CEEEEEeccceEEEEEccccee--
Confidence 888777777 77888888887653 2222 356789999999999 6 8999999999999999999862
Q ss_pred cccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 837 NSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 837 ~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.-+ ... ....|+...++|. ..+ .|+.+.+|+.+--+|++.
T Consensus 510 ~~l-~~r-ln~~vTa~~~~~~----~~~-~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 510 HLL-KVR-LNIDVTAAAFSPF----VRN-RLVVATSNNQVFEFDIEA 549 (691)
T ss_pred ecc-hhc-cCcceeeeecccc----ccC-cEEEEecCCeEEEEecch
Confidence 111 111 1257899999976 344 578889999999999854
No 75
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=2.6e-20 Score=227.79 Aligned_cols=214 Identities=13% Similarity=0.162 Sum_probs=164.6
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-------EEEEecCCC
Q 000707 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS-------VVLWIDPDP 131 (1341)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~-------~~~~l~~~~ 131 (1341)
.|.+|++ .|++|+|+|. ++.+||||+.||+|+|||+.++. .+.. +.+
T Consensus 70 ~l~GH~~-----------~V~~v~fsP~-------------d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~--L~g 123 (493)
T PTZ00421 70 ILLGQEG-----------PIIDVAFNPF-------------DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVH--LQG 123 (493)
T ss_pred eEeCCCC-----------CEEEEEEcCC-------------CCCEEEEEeCCCEEEEEecCCCccccccCcceEE--ecC
Confidence 4788998 9999999983 25789999999999999997653 2344 478
Q ss_pred CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
|.+ .|.+++|+|++ ..+|++++.|++|+|||+.+++.+..+..|.+.|.+++|+| |+..|++++.||.|++||+..
T Consensus 124 H~~-~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rs 199 (493)
T PTZ00421 124 HTK-KVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRD 199 (493)
T ss_pred CCC-cEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCC
Confidence 888 99999999975 26999999999999999999999888888889999999999 999999999999999999754
Q ss_pred CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc----CCeEEEEEcCCCc-
Q 000707 212 QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF----PRELVVFDLQYET- 286 (1341)
Q Consensus 212 ~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~----d~~I~iwDl~t~~- 286 (1341)
... ...+ ..+ .......+.|+|++..+++++. |++|+|||+....
T Consensus 200 g~~----v~tl------------~~H--------------~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 200 GTI----VSSV------------EAH--------------ASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred CcE----EEEE------------ecC--------------CCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 211 1111 000 0001235678999888887763 7999999998653
Q ss_pred eeEEEecCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEeccCCceee
Q 000707 287 PLFSAALPRGCAKFLDVLADPNNDLLYCAH-LDGKLSIWRRKEGEQVH 333 (1341)
Q Consensus 287 ~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~-~DgtI~lW~~~~g~~~~ 333 (1341)
.+....++ .........+++|+..|++++ .||+|++|++..++...
T Consensus 250 p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 250 PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 34433332 223344456789999999887 59999999998877443
No 76
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.2e-20 Score=199.62 Aligned_cols=250 Identities=14% Similarity=0.184 Sum_probs=192.7
Q ss_pred EeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCe
Q 000707 58 STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGI 137 (1341)
Q Consensus 58 ~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V 137 (1341)
+.+.+|.. .|.+|+|.-+ |.+||+|+.|+++.||++..++.+..+...+|+. .|
T Consensus 14 r~~~~~~~-----------~v~Sv~wn~~--------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-sv 67 (313)
T KOG1407|consen 14 RELQGHVQ-----------KVHSVAWNCD--------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SV 67 (313)
T ss_pred HHhhhhhh-----------cceEEEEccc--------------CceeeecccCCceEEEEecchhhhhhhcccCCCc-ch
Confidence 44678888 8999999865 6899999999999999998887777777889998 89
Q ss_pred eEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccce
Q 000707 138 QDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEV 217 (1341)
Q Consensus 138 ~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~ 217 (1341)
..++|.|..+ ++++++++|.+|++||.++++|+.......+.+. +.++| ++.++++++.|..|..+|...
T Consensus 68 dql~w~~~~~--d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp-~g~~~~~~~kdD~it~id~r~------ 137 (313)
T KOG1407|consen 68 DQLCWDPKHP--DLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSP-DGEYIAVGNKDDRITFIDART------ 137 (313)
T ss_pred hhheeCCCCC--cceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcC-CCCEEEEecCcccEEEEEecc------
Confidence 9999999874 7999999999999999999999988776555664 78999 999999999999998887533
Q ss_pred eeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEEecCCC
Q 000707 218 VVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRG 296 (1341)
Q Consensus 218 ~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~~~ 296 (1341)
+.+. + ....+-++.-++|+.++ ++.+.. .-|.|.|.....-+++..+. -|
T Consensus 138 ----~~~~---------~-------------~~~~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLkpv~si~--AH 188 (313)
T KOG1407|consen 138 ----YKIV---------N-------------EEQFKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLKPVQSIK--AH 188 (313)
T ss_pred ----ccee---------e-------------hhcccceeeeeeecCCC-CEEEEecCCceEEEEeccccccccccc--cC
Confidence 2210 0 01122245566788554 444444 45899998888767666655 44
Q ss_pred ccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCC
Q 000707 297 CAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDA 376 (1341)
Q Consensus 297 ~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~ 376 (1341)
++.-.-+.++|+|+++|+|+.|..++|||+.+-.|++.+.-++- .|-.+.|+.+
T Consensus 189 ~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw------------pVRTlSFS~d-------------- 242 (313)
T KOG1407|consen 189 PSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW------------PVRTLSFSHD-------------- 242 (313)
T ss_pred CcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC------------ceEEEEeccC--------------
Confidence 57778888999999999999999999999987666665532222 2344444433
Q ss_pred CCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccc
Q 000707 377 PHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEG 422 (1341)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~ 422 (1341)
|+.|||+|+|.-|-+=++++|.
T Consensus 243 ------------------------g~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 243 ------------------------GRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ------------------------cceeeccCccceEEeEecccCC
Confidence 7799999999999887777664
No 77
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=8.9e-21 Score=205.25 Aligned_cols=240 Identities=16% Similarity=0.255 Sum_probs=188.3
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC---c
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS---R 572 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~---~ 572 (1341)
..+.|.+++++||++ ++++|+|+.|-+|+|||+.+...+..+-.|.+.|+++.|.++- .
T Consensus 38 ~~~aH~~sitavAVs------------------~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~sh 99 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS------------------GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSH 99 (362)
T ss_pred cccccccceeEEEec------------------ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhh
Confidence 456799999999986 5799999999999999999988888999999999999998764 6
Q ss_pred EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceee--
Q 000707 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR-- 650 (1341)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~-- 650 (1341)
++|++. |+.|.+|++..-. .+..++. |...|+.|+++|.|++.++.+.|+.++.||+ -+|+.-.
T Consensus 100 LlS~sd----------DG~i~iw~~~~W~--~~~slK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL-V~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSD----------DGHIIIWRVGSWE--LLKSLKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNL-VRGRVAFVL 165 (362)
T ss_pred eeeecC----------CCcEEEEEcCCeE--Eeeeecc-cccccceeEecCCCceEEEEcCCceeeeehh-hcCccceee
Confidence 787655 4589999986543 6777665 8888999999999999999999999999999 5664322
Q ss_pred eccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEE
Q 000707 651 SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1341)
Q Consensus 651 ~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~ 730 (1341)
.++..-+.+.|+|. +++|+....+ .|-
T Consensus 166 ~L~~~at~v~w~~~----------------------------------------------------Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQ----------------------------------------------------GDHFVVSGRN-KID 192 (362)
T ss_pred ccCCcceeeEEcCC----------------------------------------------------CCEEEEEecc-EEE
Confidence 23322245788753 4677776654 477
Q ss_pred EEEecCCeeecccCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCC
Q 000707 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPG 808 (1341)
Q Consensus 731 vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~g 808 (1341)
+|.++...+... - .....+.++.| ++..|++|..|++|++||..++. ...|.+|+.+|..|.+--+..+
T Consensus 193 i~q~d~A~v~~~-i--------~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 193 IYQLDNASVFRE-I--------ENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred EEecccHhHhhh-h--------hccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCc
Confidence 888876554210 0 01123678888 88999999999999999999876 5678999999999995432112
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCC
Q 000707 809 DRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 809 d~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
.+|++++.||.|+|||++...
T Consensus 264 ----~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 264 ----EYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred ----eEEEEeccCceEEEEEccccc
Confidence 579999999999999998753
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.87 E-value=2.1e-21 Score=203.46 Aligned_cols=288 Identities=16% Similarity=0.164 Sum_probs=224.3
Q ss_pred CCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEe
Q 000707 130 DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1341)
Q Consensus 130 ~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~ 209 (1341)
.||+. ||.+|+|+|--+++.+|.+++.|+.-.|-+-+||.=|.++.+|.+.|+....+. +..+.|+++.|-+-++||.
T Consensus 11 ~ghtr-pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 11 HGHTR-PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDA 88 (334)
T ss_pred cCCCc-ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhh
Confidence 68999 999999999888889999999999999999999999999999999999999987 7888888888888888874
Q ss_pred cCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCce-e
Q 000707 210 LGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP-L 288 (1341)
Q Consensus 210 ~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~-l 288 (1341)
... .++..++ +...|..|+|+.|..+|++++.++-++|||+...+. .
T Consensus 89 ~tg----------------delhsf~----------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App 136 (334)
T KOG0278|consen 89 VTG----------------DELHSFE----------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP 136 (334)
T ss_pred hhh----------------hhhhhhh----------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc
Confidence 321 0122221 122366789999999999999999999999987643 2
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhh
Q 000707 289 FSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQN 368 (1341)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~ 368 (1341)
..+ .++...+..+.+|...+.+.+...|++||+||.++|..++++. . + + .+..+-++|++
T Consensus 137 ~E~--~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~---~--~-------s-~VtSlEvs~dG----- 196 (334)
T KOG0278|consen 137 KEI--SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE---F--N-------S-PVTSLEVSQDG----- 196 (334)
T ss_pred hhh--cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe---c--C-------C-CCcceeeccCC-----
Confidence 222 3566788899999988888899999999999999998777762 1 1 0 22233333332
Q ss_pred hhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcc
Q 000707 369 VAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTN 448 (1341)
Q Consensus 369 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~ 448 (1341)
.++++...+.|.+||.++-..++..+
T Consensus 197 ----------------------------------~ilTia~gssV~Fwdaksf~~lKs~k-------------------- 222 (334)
T KOG0278|consen 197 ----------------------------------RILTIAYGSSVKFWDAKSFGLLKSYK-------------------- 222 (334)
T ss_pred ----------------------------------CEEEEecCceeEEeccccccceeecc--------------------
Confidence 56777788899999987644322100
Q ss_pred cccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCC
Q 000707 449 TNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVA 528 (1341)
Q Consensus 449 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~ 528 (1341)
.+-.|++..++| .
T Consensus 223 ---------------------------------------------------~P~nV~SASL~P----------------~ 235 (334)
T KOG0278|consen 223 ---------------------------------------------------MPCNVESASLHP----------------K 235 (334)
T ss_pred ---------------------------------------------------CccccccccccC----------------C
Confidence 133456667777 3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEE-eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCc
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l-~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1341)
...++.|++|+.++.||..||..+..+ .+|.++|.++.|+|+|.+.+ +|+.|++|+||-...++
T Consensus 236 k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yA---------sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 236 KEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYA---------SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred CceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceee---------ccCCCceEEEEEecCCC
Confidence 578889999999999999999988886 89999999999999997663 56778899999876554
No 79
>PTZ00420 coronin; Provisional
Probab=99.87 E-value=5e-20 Score=226.22 Aligned_cols=230 Identities=10% Similarity=0.132 Sum_probs=175.1
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS- 122 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~- 122 (1341)
+.|.+|+......+.+|.+|.+ .|++|+|+|+. +.+||||+.||+|+|||+.++.
T Consensus 54 gvI~L~~~~r~~~v~~L~gH~~-----------~V~~lafsP~~-------------~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 54 GAIRLENQMRKPPVIKLKGHTS-----------SILDLQFNPCF-------------SEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred eEEEeeecCCCceEEEEcCCCC-----------CEEEEEEcCCC-------------CCEEEEEeCCCeEEEEECCCCCc
Confidence 5688999887788889999998 99999999863 5789999999999999997653
Q ss_pred -------EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEE
Q 000707 123 -------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHF 195 (1341)
Q Consensus 123 -------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~l 195 (1341)
.+.. +.+|.+ .|.+++|+|++. .+|++++.|++|+|||+.+++.+..+.. ...|.+++|+| |++.|
T Consensus 110 ~~~~i~~p~~~--L~gH~~-~V~sVaf~P~g~--~iLaSgS~DgtIrIWDl~tg~~~~~i~~-~~~V~Slswsp-dG~lL 182 (568)
T PTZ00420 110 SVKEIKDPQCI--LKGHKK-KISIIDWNPMNY--YIMCSSGFDSFVNIWDIENEKRAFQINM-PKKLSSLKWNI-KGNLL 182 (568)
T ss_pred cccccccceEE--eecCCC-cEEEEEECCCCC--eEEEEEeCCCeEEEEECCCCcEEEEEec-CCcEEEEEECC-CCCEE
Confidence 1223 467888 999999999862 5778999999999999999988777764 67899999999 99999
Q ss_pred EEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC-
Q 000707 196 CVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP- 274 (1341)
Q Consensus 196 a~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d- 274 (1341)
++++.|+.|++||+..... ...+. .|-.. .....+....|++++..+++++.|
T Consensus 183 at~s~D~~IrIwD~Rsg~~----i~tl~------------gH~g~----------~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQEI----ASSFH------------IHDGG----------KNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred EEEecCCEEEEEECCCCcE----EEEEe------------cccCC----------ceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 9999999999999754211 11111 11000 000012223678999999999977
Q ss_pred ---CeEEEEEcCC-CceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 275 ---RELVVFDLQY-ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 275 ---~~I~iwDl~t-~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
|+|+|||+.. +..+..+.++.+.+.+.-....++|.++++|..|++|++|+...+.
T Consensus 237 ~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 237 NNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 4899999994 6677776665443433333344568889999999999999997664
No 80
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2e-20 Score=221.17 Aligned_cols=276 Identities=14% Similarity=0.200 Sum_probs=221.8
Q ss_pred CceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE
Q 000707 28 GSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1341)
Q Consensus 28 ~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1341)
+-+|||..+.+|.|.+..|++|+..++++......+.. .||+|+|+++ |..||.|
T Consensus 181 nlldWss~n~laValg~~vylW~~~s~~v~~l~~~~~~-----------~vtSv~ws~~--------------G~~LavG 235 (484)
T KOG0305|consen 181 NLLDWSSANVLAVALGQSVYLWSASSGSVTELCSFGEE-----------LVTSVKWSPD--------------GSHLAVG 235 (484)
T ss_pred hHhhcccCCeEEEEecceEEEEecCCCceEEeEecCCC-----------ceEEEEECCC--------------CCEEEEe
Confidence 45899988899999999999999999998776666665 8999999986 5789999
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCC-CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEE-EeCCCCceEEE
Q 000707 108 DRHGRVALLDFRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK-YDASPEYLSCI 185 (1341)
Q Consensus 108 ~~dG~I~vWDv~tg~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~-~~~~~~~v~~~ 185 (1341)
-.+|.|.|||+.+.+.+..+ .+ |.. .|.+|+|.. ..+.+++.++.|..+|++.+..+-. +.+|...|-.+
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~--~~~h~~-rvg~laW~~-----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTL--RGSHAS-RVGSLAWNS-----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred ecCCeEEEEehhhccccccc--cCCcCc-eeEEEeccC-----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 99999999999888777774 45 666 899999983 6899999999999999998776554 67778899999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 186 ~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
.|++ |++++|++|.|+.+.+||.....+ .+.+ . .|...|..++|+|-.
T Consensus 308 kws~-d~~~lASGgnDN~~~Iwd~~~~~p----~~~~------------~---------------~H~aAVKA~awcP~q 355 (484)
T KOG0305|consen 308 KWSP-DGNQLASGGNDNVVFIWDGLSPEP----KFTF------------T---------------EHTAAVKALAWCPWQ 355 (484)
T ss_pred EECC-CCCeeccCCCccceEeccCCCccc----cEEE------------e---------------ccceeeeEeeeCCCc
Confidence 9999 999999999999999998633211 1111 1 123357889999998
Q ss_pred CceEEEE---cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEe--cCCcEEEEeccCCceeeeeecccc
Q 000707 266 RHIIFVT---FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH--LDGKLSIWRRKEGEQVHVMCTMEE 340 (1341)
Q Consensus 266 ~~l~~~~---~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~--~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1341)
+.|++.+ .|+.|++||..+|+.+..+- .++-+.++.+++..+-|+++| .+..|+||+..+-..+..++++..
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 8777765 69999999999999887653 346788999999887777765 467899999877555555533222
Q ss_pred cccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccc
Q 000707 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1341)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~ 420 (1341)
+|++++.+|+ |+.+++++.|.++++|++-.
T Consensus 433 ------------RVl~la~SPd--------------------------------------g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 433 ------------RVLYLALSPD--------------------------------------GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ------------eeEEEEECCC--------------------------------------CCEEEEecccCcEEeccccC
Confidence 6777777765 67999999999999999865
Q ss_pred c
Q 000707 421 E 421 (1341)
Q Consensus 421 ~ 421 (1341)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 3
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1e-20 Score=203.28 Aligned_cols=311 Identities=17% Similarity=0.213 Sum_probs=223.0
Q ss_pred ccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeE
Q 000707 484 QADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVR 563 (1341)
Q Consensus 484 ~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~ 563 (1341)
..++.+++.+...+.||...|+.++... ..+++.+++.|.+.+||.+++|.|+.++.||.+.|+
T Consensus 131 Fk~~t~~~~lvre~~GHkDGiW~Vaa~~----------------tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVN 194 (481)
T KOG0300|consen 131 FKDGTVKFRLVRELEGHKDGIWHVAADS----------------TQPICGTASADHTARIWSLESGACLATYTGHTGSVN 194 (481)
T ss_pred ecCCceeEeehhhhcccccceeeehhhc----------------CCcceeecccccceeEEeeccccceeeeccccccee
Confidence 3456677888888999999999988764 478999999999999999999999999999999999
Q ss_pred EEEEcCCCcEE-EEecCCcc------------------cccCc-----ccCeEEEEE--c-cCCc--eeeeEEeccCCCC
Q 000707 564 GLRWLGNSRLV-SFSYSQVN------------------EKSGG-----YINRLVVTC--L-RSGI--NRAFRVLQKPERA 614 (1341)
Q Consensus 564 ~l~fs~d~~ll-S~s~d~~~------------------~~sg~-----~~~~i~lwD--~-~tG~--~~~l~~l~~~~~~ 614 (1341)
+|.|++.+.++ +++.|... +.++- .|....-.| . ..|. ..++..+.+ |..
T Consensus 195 sikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~ 273 (481)
T KOG0300|consen 195 SIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRA 273 (481)
T ss_pred eEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-ccc
Confidence 99999988655 44444210 00000 000000011 0 0111 124444566 888
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCce---EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCC
Q 000707 615 PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1341)
Q Consensus 615 ~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v---~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1341)
+|.+..|-..|+.++++++|++-.+||+ +++..+..+.++- +.+.
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDV-Etge~v~~LtGHd~ELtHcs------------------------------- 321 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDV-ETGEVVNILTGHDSELTHCS------------------------------- 321 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeee-ccCceeccccCcchhccccc-------------------------------
Confidence 9999999999999999999999999999 7888877665321 1110
Q ss_pred CcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-cCCEEEE
Q 000707 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVM 770 (1341)
Q Consensus 692 g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~Las 770 (1341)
..+...++++.+.|.+.++||... .+..+ ..|.||+..|+++.| .++.+++
T Consensus 322 ---------------------tHptQrLVvTsSrDtTFRLWDFRe-aI~sV------~VFQGHtdtVTS~vF~~dd~vVS 373 (481)
T KOG0300|consen 322 ---------------------THPTQRLVVTSSRDTTFRLWDFRE-AIQSV------AVFQGHTDTVTSVVFNTDDRVVS 373 (481)
T ss_pred ---------------------cCCcceEEEEeccCceeEeccchh-hccee------eeecccccceeEEEEecCCceee
Confidence 112234567788999999999852 22211 235689999999999 6788999
Q ss_pred EeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC--ccccccccCCCCC
Q 000707 771 GDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD--PLANSLLQPQFPG 846 (1341)
Q Consensus 771 Gs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~--~l~~~l~~gh~~~ 846 (1341)
|+.|.+|++||++.-+ +.++. -..++..|+.+-. + ..||.--+..-||+||+.... .+.++-.+||.
T Consensus 374 gSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g--~----~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr-- 444 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG--H----PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR-- 444 (481)
T ss_pred cCCCceEEEeeeccccCcceeee-cCCccceeEeecC--C----ceEEeccCCceEEEEecCCCccccCCcccccccc--
Confidence 9999999999998754 44554 3678889998876 2 356666677889999998764 12233446776
Q ss_pred CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 847 ~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
--|.+++|.-+.. ..-|.++|.|..+--|.+.+.
T Consensus 445 RMV~c~AW~eehp----~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 445 RMVTCCAWLEEHP----ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred eeeeeeeccccCc----ccccccccccceeeeeEeccc
Confidence 4599999986511 123569999999999999864
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.87 E-value=1.2e-20 Score=232.59 Aligned_cols=249 Identities=14% Similarity=0.252 Sum_probs=183.1
Q ss_pred eeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-------C-----------cEEEEE
Q 000707 494 DGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-------N-----------AVTASF 555 (1341)
Q Consensus 494 ~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-------g-----------~~~~~l 555 (1341)
..++..|.+.|+|++|+| +|.+||+|++|+.|.||+... | ++...|
T Consensus 62 l~~m~~h~~sv~CVR~S~----------------dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l 125 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSP----------------DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL 125 (942)
T ss_pred heeeccccCceeEEEECC----------------CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE
Confidence 346777999999999998 699999999999999999872 1 156788
Q ss_pred eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCC
Q 000707 556 SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDA 635 (1341)
Q Consensus 556 ~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~ 635 (1341)
.+|++.|.+++|+|++.++. +++.||+|.|||.++.+ .++++++ |...|..+.|.|-|+|||+-+.|+
T Consensus 126 ~~H~~DV~Dv~Wsp~~~~lv---------S~s~DnsViiwn~~tF~--~~~vl~~-H~s~VKGvs~DP~Gky~ASqsdDr 193 (942)
T KOG0973|consen 126 RGHDSDVLDVNWSPDDSLLV---------SVSLDNSVIIWNAKTFE--LLKVLRG-HQSLVKGVSWDPIGKYFASQSDDR 193 (942)
T ss_pred ecCCCccceeccCCCccEEE---------EecccceEEEEccccce--eeeeeec-ccccccceEECCccCeeeeecCCc
Confidence 99999999999999987663 45567899999999986 6777777 889999999999999999999999
Q ss_pred cEEEEeccCCCceeeeccCc---------eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcC
Q 000707 636 PVEVWAMTKNPIMLRSLALP---------FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKD 706 (1341)
Q Consensus 636 ~I~vWDl~~t~~~l~~l~~~---------v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 706 (1341)
+|+||++ ..-.+.+.+..| |..+.|||++......+
T Consensus 194 tikvwrt-~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n---------------------------------- 238 (942)
T KOG0973|consen 194 TLKVWRT-SDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN---------------------------------- 238 (942)
T ss_pred eEEEEEc-ccceeeEeeccchhhCCCcceeeecccCCCcCeecchh----------------------------------
Confidence 9999997 344455544433 45788998854321100
Q ss_pred CCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-------cCC------------E
Q 000707 707 ASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-------RLP------------H 767 (1341)
Q Consensus 707 ~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-------dg~------------~ 767 (1341)
|+-..-.++.|.+-.+-+. + -.|+||.+.+.++.| ..+ .
T Consensus 239 --------------A~n~~~~~~~IieR~tWk~-~-------~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i 296 (942)
T KOG0973|consen 239 --------------AVNGGKSTIAIIERGTWKV-D-------KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI 296 (942)
T ss_pred --------------hccCCcceeEEEecCCcee-e-------eeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence 0000111223322211111 0 125578888888887 111 6
Q ss_pred EEEEeCCCcEEEEECCCCc-ee-eeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 768 VVMGDRSGNIRWWDVTTGH-SS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 768 LasGs~DgtI~lWDl~tg~-~~-~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
+|+|+.|++|.||....-+ +. -..--...|..++|+|| | -.|.++|.||+|.+...+..+
T Consensus 297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspd--G----~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPD--G----FSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCC--C----CeEEEEecCCeEEEEEcchHH
Confidence 8899999999999986544 11 11223578999999999 5 568899999999999987654
No 83
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.87 E-value=1e-21 Score=218.68 Aligned_cols=278 Identities=13% Similarity=0.167 Sum_probs=208.4
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEeecCCCeEEEEEcCCCcEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA--VTASFSVHNGTVRGLRWLGNSRLV 574 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~--~~~~l~~H~~~V~~l~fs~d~~ll 574 (1341)
+..|-+.|..+.|-+ +...|++|+.|..|++|++..++ .+.+|.|-.++|+++.|.++++.+
T Consensus 171 ld~h~gev~~v~~l~----------------~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~ 234 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR----------------NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV 234 (459)
T ss_pred hhccccccceeEEcc----------------CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE
Confidence 455778888888877 45789999999999999998776 677888989999999998887544
Q ss_pred EEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc-
Q 000707 575 SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA- 653 (1341)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~- 653 (1341)
.++. +|+.+++|++..++ .+.++.| |.+.|+++.|......+++|+.|.+||+||+ ....|.++.-
T Consensus 235 iAas---------~d~~~r~Wnvd~~r--~~~TLsG-HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl-~k~~C~kt~l~ 301 (459)
T KOG0288|consen 235 IAAS---------NDKNLRLWNVDSLR--LRHTLSG-HTDKVTAAKFKLSHSRVVSGSADRTIKLWDL-QKAYCSKTVLP 301 (459)
T ss_pred Eeec---------CCCceeeeeccchh--hhhhhcc-cccceeeehhhccccceeeccccchhhhhhh-hhhheeccccc
Confidence 3322 24589999998877 5567777 9999999999988777999999999999999 5666766531
Q ss_pred C-ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEE
Q 000707 654 L-PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1341)
Q Consensus 654 ~-~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vw 732 (1341)
. ....++-+ ...++++-.|++|+.|
T Consensus 302 ~S~cnDI~~~------------------------------------------------------~~~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 302 GSQCNDIVCS------------------------------------------------------ISDVISGHFDKKVRFW 327 (459)
T ss_pred cccccceEec------------------------------------------------------ceeeeecccccceEEE
Confidence 0 00001100 1234566689999999
Q ss_pred EecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee-eecc----CCCcEEEEEEccC
Q 000707 733 EVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS-QFST----HREGIRRIKFSPV 805 (1341)
Q Consensus 733 dv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~-~l~g----H~~~V~~V~fSP~ 805 (1341)
|+.+..... ..|.+ +.|+++.. +|..|.+.+.|.++++.|+++..++ .|.. -....+++.|||+
T Consensus 328 D~Rs~~~~~---sv~~g------g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd 398 (459)
T KOG0288|consen 328 DIRSADKTR---SVPLG------GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPD 398 (459)
T ss_pred eccCCceee---EeecC------cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCC
Confidence 986544321 11221 35776665 9999999999999999999997743 3321 1123889999999
Q ss_pred CCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 806 VPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 806 ~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
+ .++|+|+.||.|.||++.+++ +...+...+. +..|++++|+|. |. .|++++.++.+++|.
T Consensus 399 --~----~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s-~~aI~s~~W~~s----G~--~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 399 --G----SYVAAGSADGSVYIWSVFTGK-LEKVLSLSTS-NAAITSLSWNPS----GS--GLLSADKQKAVTLWT 459 (459)
T ss_pred --C----ceeeeccCCCcEEEEEccCce-EEEEeccCCC-CcceEEEEEcCC----Cc--hhhcccCCcceEecC
Confidence 5 789999999999999999998 4444422332 236999999997 67 467999999999993
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=2e-20 Score=219.66 Aligned_cols=278 Identities=19% Similarity=0.316 Sum_probs=211.5
Q ss_pred EeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE--EEEEeecCCCeEE-EEEcC
Q 000707 493 LDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV--TASFSVHNGTVRG-LRWLG 569 (1341)
Q Consensus 493 l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~--~~~l~~H~~~V~~-l~fs~ 569 (1341)
+.-.|.||..-|..+++-+ +..+++|+.||++++|+-..++. ...+.+|.+-|.. +++.+
T Consensus 6 ls~~l~gH~~DVr~v~~~~-----------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e 68 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTD-----------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE 68 (745)
T ss_pred eEEEeccCccchheeEecC-----------------CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc
Confidence 4456778999998887665 45789999999999999755443 2456778877765 77754
Q ss_pred --CCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc
Q 000707 570 --NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI 647 (1341)
Q Consensus 570 --d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~ 647 (1341)
.++++.++ .|..+.+|...++. ++..+++ |+..|.++....++. +++||+|.|++||-. ++
T Consensus 69 ~~~~~l~~g~----------~D~~i~v~~~~~~~--P~~~Lkg-H~snVC~ls~~~~~~-~iSgSWD~TakvW~~---~~ 131 (745)
T KOG0301|consen 69 SDKGRLVVGG----------MDTTIIVFKLSQAE--PLYTLKG-HKSNVCSLSIGEDGT-LISGSWDSTAKVWRI---GE 131 (745)
T ss_pred ccCcceEeec----------ccceEEEEecCCCC--chhhhhc-cccceeeeecCCcCc-eEecccccceEEecc---hh
Confidence 34666544 34588999988877 7888887 899999999988988 999999999999965 34
Q ss_pred eeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCC
Q 000707 648 MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG 727 (1341)
Q Consensus 648 ~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg 727 (1341)
+..++. +.++..|..... + ...+++|+.|.
T Consensus 132 l~~~l~-gH~asVWAv~~l------------------------------------------------~-e~~~vTgsaDK 161 (745)
T KOG0301|consen 132 LVYSLQ-GHTASVWAVASL------------------------------------------------P-ENTYVTGSADK 161 (745)
T ss_pred hhcccC-Ccchheeeeeec------------------------------------------------C-CCcEEeccCcc
Confidence 544444 334445642110 1 13578999999
Q ss_pred cEEEEEecCCeeecccCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEEEEEEccCC
Q 000707 728 ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVV 806 (1341)
Q Consensus 728 ~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~ 806 (1341)
+|++|.- +..++ +|.||...|..+++ ++..++|++.||.|++||+....+..+.||+..|+++...++
T Consensus 162 tIklWk~-~~~l~---------tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~- 230 (745)
T KOG0301|consen 162 TIKLWKG-GTLLK---------TFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALS- 230 (745)
T ss_pred eeeeccC-Cchhh---------hhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCC-
Confidence 9999976 33443 24589999999999 887999999999999999955458899999999999996555
Q ss_pred CCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 807 PGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 807 ~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
+ +.+++++.|++++||+.. + +...+. | ++..|+++...+. |+ +++|+.||.||||....
T Consensus 231 -~----~~Ivs~gEDrtlriW~~~--e-~~q~I~--l-PttsiWsa~~L~N----gD---Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 231 -D----GLIVSTGEDRTLRIWKKD--E-CVQVIT--L-PTTSIWSAKVLLN----GD---IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred -C----CeEEEecCCceEEEeecC--c-eEEEEe--c-CccceEEEEEeeC----CC---EEEeccCceEEEEEecc
Confidence 2 789999999999999987 3 333331 2 2357899888875 44 57999999999999774
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=5.2e-20 Score=198.39 Aligned_cols=257 Identities=20% Similarity=0.293 Sum_probs=188.0
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcE-EEEEeecCCCeEEEEEcCCCcEEEEecC
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAV-TASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~-~~~l~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
..|.+|+|+|. ...+++.|+.||+||+|+++. |.. -+....|.++|.+++|+.||..+-
T Consensus 28 DsIS~l~FSP~---------------~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf---- 88 (347)
T KOG0647|consen 28 DSISALAFSPQ---------------ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVF---- 88 (347)
T ss_pred cchheeEeccc---------------cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEE----
Confidence 46889999992 467899999999999999986 443 355678999999999999885442
Q ss_pred CcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCC--EEEEEECCCcEEEEeccCCCceeeeccCc--
Q 000707 580 QVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGR--YLLILFRDAPVEVWAMTKNPIMLRSLALP-- 655 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~--~Las~s~D~~I~vWDl~~t~~~l~~l~~~-- 655 (1341)
+|+.|+.+++||+.+|+...+. .|..+|+.++|-+-.. .|++||+|++||.||+ +..+.+.++..|
T Consensus 89 -----~g~~Dk~~k~wDL~S~Q~~~v~----~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~-R~~~pv~t~~LPeR 158 (347)
T KOG0647|consen 89 -----SGGCDKQAKLWDLASGQVSQVA----AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT-RSSNPVATLQLPER 158 (347)
T ss_pred -----eeccCCceEEEEccCCCeeeee----ecccceeEEEEecCCCcceeEecccccceeeccc-CCCCeeeeeeccce
Confidence 3344568999999999844332 4889999999987665 7999999999999999 777666655432
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
++++ + --.+.++++..+..|.+|+++
T Consensus 159 vYa~----D--------------------------------------------------v~~pm~vVata~r~i~vynL~ 184 (347)
T KOG0647|consen 159 VYAA----D--------------------------------------------------VLYPMAVVATAERHIAVYNLE 184 (347)
T ss_pred eeeh----h--------------------------------------------------ccCceeEEEecCCcEEEEEcC
Confidence 2111 0 012567889999999999995
Q ss_pred CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc---eeeeccCCC---------cEEEEE
Q 000707 736 GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH---SSQFSTHRE---------GIRRIK 801 (1341)
Q Consensus 736 ~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~---~~~l~gH~~---------~V~~V~ 801 (1341)
+... .++ +..+ .| ...+.||+. |++..+.|+-+|.+-+..+..+. --+|..|+. .|.+|+
T Consensus 185 n~~t-e~k-~~~S-pL---k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 185 NPPT-EFK-RIES-PL---KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred CCcc-hhh-hhcC-cc---cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE
Confidence 4322 111 0000 01 124667765 77777999999999999998862 345677763 578899
Q ss_pred EccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCC
Q 000707 802 FSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 802 fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~ 857 (1341)
|+|.. +.|++++.||++..||-+....|... ..| ..+|....|+.+
T Consensus 259 FhP~h------gtlvTaGsDGtf~FWDkdar~kLk~s--~~~--~qpItcc~fn~~ 304 (347)
T KOG0647|consen 259 FHPVH------GTLVTAGSDGTFSFWDKDARTKLKTS--ETH--PQPITCCSFNRN 304 (347)
T ss_pred eeccc------ceEEEecCCceEEEecchhhhhhhcc--CcC--CCccceeEecCC
Confidence 99972 68999999999999998776544321 223 478999999876
No 86
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=6.2e-20 Score=194.21 Aligned_cols=269 Identities=16% Similarity=0.230 Sum_probs=205.2
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEE--EeecCCCeEEEEEcCCC--
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTAS--FSVHNGTVRGLRWLGNS-- 571 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~--l~~H~~~V~~l~fs~d~-- 571 (1341)
.+++|..+|.+|+|.. +|..||+|+.|+++++|+++-++..+. ..+|++.|-.+.|.|..
T Consensus 15 ~~~~~~~~v~Sv~wn~----------------~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNC----------------DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HhhhhhhcceEEEEcc----------------cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCc
Confidence 3567888999999886 699999999999999999988766554 47899999999998743
Q ss_pred cEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee
Q 000707 572 RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1341)
Q Consensus 572 ~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~ 651 (1341)
.+++++.+. +|++||++++++..-...++ ..| -+.++|+|.|++.+.+|..|...|. ++.+.+..
T Consensus 79 ~~atas~dk----------~ir~wd~r~~k~~~~i~~~~---eni-~i~wsp~g~~~~~~~kdD~it~id~-r~~~~~~~ 143 (313)
T KOG1407|consen 79 LFATASGDK----------TIRIWDIRSGKCTARIETKG---ENI-NITWSPDGEYIAVGNKDDRITFIDA-RTYKIVNE 143 (313)
T ss_pred ceEEecCCc----------eEEEEEeccCcEEEEeeccC---cce-EEEEcCCCCEEEEecCcccEEEEEe-cccceeeh
Confidence 666666543 89999999998433222222 333 4889999999999999999999999 67666655
Q ss_pred ccCc--eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcE
Q 000707 652 LALP--FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1341)
Q Consensus 652 l~~~--v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I 729 (1341)
.+.+ +..+.|+.+ ...|......|.|
T Consensus 144 ~~~~~e~ne~~w~~~----------------------------------------------------nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 144 EQFKFEVNEISWNNS----------------------------------------------------NDLFFLTNGLGCV 171 (313)
T ss_pred hcccceeeeeeecCC----------------------------------------------------CCEEEEecCCceE
Confidence 4422 345666522 2445555667888
Q ss_pred EEEEecC-CeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccC
Q 000707 730 GVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPV 805 (1341)
Q Consensus 730 ~vwdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~ 805 (1341)
.|...-. +.+.. +..|.....||.| +|+++|+|+.|-.+.+||+..-. .+.++-|.-+|+.|.||-+
T Consensus 172 ~ILsypsLkpv~s---------i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 172 EILSYPSLKPVQS---------IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred EEEeccccccccc---------cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 8876532 22221 2246666778888 89999999999999999997655 5788999999999999999
Q ss_pred CCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECC
Q 000707 806 VPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGAD 873 (1341)
Q Consensus 806 ~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~D 873 (1341)
| ++||+++.|..|-|=++.+|+.+-. ..+. ++-..|+|+|. ++ +||-++.|
T Consensus 243 --g----~~lASaSEDh~IDIA~vetGd~~~e---I~~~--~~t~tVAWHPk-----~~-LLAyA~dd 293 (313)
T KOG1407|consen 243 --G----RMLASASEDHFIDIAEVETGDRVWE---IPCE--GPTFTVAWHPK-----RP-LLAYACDD 293 (313)
T ss_pred --c----ceeeccCccceEEeEecccCCeEEE---eecc--CCceeEEecCC-----Cc-eeeEEecC
Confidence 6 8899999999999999999985532 1232 67899999996 55 57777765
No 87
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.3e-19 Score=192.76 Aligned_cols=250 Identities=15% Similarity=0.158 Sum_probs=198.2
Q ss_pred CCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcE
Q 000707 26 NFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1341)
.+++++|+++| +++.+ .+++++|+|..+++.+.++..++- -|..++|.... ..
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skky-----------G~~~~~Fth~~--------------~~ 70 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKY-----------GVDLACFTHHS--------------NT 70 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccc-----------cccEEEEecCC--------------ce
Confidence 36899999999 44444 456999999999999999987764 78899998753 23
Q ss_pred EEEEe--CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000707 104 LAAAD--RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1341)
Q Consensus 104 LASg~--~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1341)
+.-++ .|.+||.-++.+.+.++.| +||.+ .|..|+-+|.+ +..+|++.|.+|++||+++.+|..-+.....+
T Consensus 71 ~i~sStk~d~tIryLsl~dNkylRYF--~GH~~-~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p 144 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDNKYLRYF--PGHKK-RVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP 144 (311)
T ss_pred EEEccCCCCCceEEEEeecCceEEEc--CCCCc-eEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence 44444 4899999999999999996 89999 99999999987 78899999999999999988887666543333
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000707 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~af 261 (1341)
.++|+| .+-.+|++.....|.++|+..-..... ..+.+ . .....+...+.|
T Consensus 145 --i~AfDp-~GLifA~~~~~~~IkLyD~Rs~dkgPF--~tf~i----------~--------------~~~~~ew~~l~F 195 (311)
T KOG1446|consen 145 --IAAFDP-EGLIFALANGSELIKLYDLRSFDKGPF--TTFSI----------T--------------DNDEAEWTDLEF 195 (311)
T ss_pred --ceeECC-CCcEEEEecCCCeEEEEEecccCCCCc--eeEcc----------C--------------CCCccceeeeEE
Confidence 479999 899999998777999999755211111 01110 0 011224667899
Q ss_pred ccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 262 SPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCA-KFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 262 Spdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~-~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
||||+.++.....+.+.+.|.-+|+.+.++..+.... -..+..+.||++++.+|+.||+|-+|+.++|.+++.+
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 9999999999999999999999999999888765443 2256677899999999999999999999999988776
No 88
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.1e-20 Score=224.08 Aligned_cols=255 Identities=14% Similarity=0.215 Sum_probs=183.5
Q ss_pred eeecc-ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC------------------------
Q 000707 494 DGQLQ-ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA------------------------ 548 (1341)
Q Consensus 494 ~g~l~-g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t------------------------ 548 (1341)
.+-++ .|.+.|.++.|++ +|++||+|+.||.||||.+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~----------------DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~ 322 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSH----------------DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQI 322 (712)
T ss_pred eeccccccCCcEEEEEeCC----------------CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhcccc
Confidence 34455 7999999999998 799999999999999999754
Q ss_pred --------C----------------------------cEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeE
Q 000707 549 --------N----------------------------AVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRL 592 (1341)
Q Consensus 549 --------g----------------------------~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i 592 (1341)
. +...+|.||++.|.+|.|+.++.|||.|-|. ++
T Consensus 323 ~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDK----------TV 392 (712)
T KOG0283|consen 323 EPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDK----------TV 392 (712)
T ss_pred CccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccc----------cE
Confidence 0 0234678999999999999999999877654 99
Q ss_pred EEEEccCCceeeeEEeccCCCCCeEEEEECC-CCCEEEEEECCCcEEEEeccCCCceeeec--cCceEEEEEcCCCCCCC
Q 000707 593 VVTCLRSGINRAFRVLQKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIMLRSL--ALPFTVLEWTLPTVPWP 669 (1341)
Q Consensus 593 ~lwD~~tG~~~~l~~l~~~~~~~I~~i~~Sp-dG~~Las~s~D~~I~vWDl~~t~~~l~~l--~~~v~~l~wsp~~~~~~ 669 (1341)
+||++.... ++.++. |.+-|+||+|+| |.+|+++|+-|+.+|||++ ...+...-. ..-||++++.|+
T Consensus 393 RLWh~~~~~--CL~~F~--HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI-~d~~Vv~W~Dl~~lITAvcy~Pd----- 462 (712)
T KOG0283|consen 393 RLWHPGRKE--CLKVFS--HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI-SDKKVVDWNDLRDLITAVCYSPD----- 462 (712)
T ss_pred EeecCCCcc--eeeEEe--cCCeeEEEEecccCCCcEeecccccceEEeec-CcCeeEeehhhhhhheeEEeccC-----
Confidence 999997666 777764 888999999999 7899999999999999999 444332211 122455555543
Q ss_pred CCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCC
Q 000707 670 SQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSS 749 (1341)
Q Consensus 670 ~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~ 749 (1341)
|+..++|+.+|.+++|+.++.++..
T Consensus 463 -----------------------------------------------Gk~avIGt~~G~C~fY~t~~lk~~~-------- 487 (712)
T KOG0283|consen 463 -----------------------------------------------GKGAVIGTFNGYCRFYDTEGLKLVS-------- 487 (712)
T ss_pred -----------------------------------------------CceEEEEEeccEEEEEEccCCeEEE--------
Confidence 3444566666666666666554421
Q ss_pred ccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEEC
Q 000707 750 SFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1341)
Q Consensus 750 ~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl 829 (1341)
+. .|++ ..++ . ..|+ +|+.+.|.|... .+|++.++|..|||+|+
T Consensus 488 ----------~~--------------~I~~---~~~K--k-~~~~-rITG~Q~~p~~~-----~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 488 ----------DF--------------HIRL---HNKK--K-KQGK-RITGLQFFPGDP-----DEVLVTSNDSRIRIYDG 531 (712)
T ss_pred ----------ee--------------eEee---ccCc--c-ccCc-eeeeeEecCCCC-----CeEEEecCCCceEEEec
Confidence 00 0000 0000 1 1244 899999999843 47889999999999999
Q ss_pred CCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 830 DSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 830 ~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
++.+ +...+ .|+.-...=....|+.| |+ .|++++.|.-|.+|+...
T Consensus 532 ~~~~-lv~Kf-KG~~n~~SQ~~Asfs~D----gk--~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 532 RDKD-LVHKF-KGFRNTSSQISASFSSD----GK--HIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cchh-hhhhh-cccccCCcceeeeEccC----CC--EEEEeecCceEEEEeCCC
Confidence 7766 44445 44432233355678877 66 678999999999999853
No 89
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.86 E-value=7.4e-21 Score=204.67 Aligned_cols=277 Identities=17% Similarity=0.245 Sum_probs=218.5
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEE--------EeecCCCeEEEEEcCCCc
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTAS--------FSVHNGTVRGLRWLGNSR 572 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~--------l~~H~~~V~~l~fs~d~~ 572 (1341)
.+-+-|..|+| +|++|++|+.||-|.|||..+|++.+. |--|..+|.++.|+.|..
T Consensus 213 KSh~EcA~FSP----------------DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE 276 (508)
T KOG0275|consen 213 KSHVECARFSP----------------DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE 276 (508)
T ss_pred ccchhheeeCC----------------CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH
Confidence 45577888998 699999999999999999999987554 345778999999999987
Q ss_pred EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec
Q 000707 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL 652 (1341)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l 652 (1341)
.++ +|..|+.|++|.++||. ++|.+...|...|+++.||.|+..+++++.|.++||--+ ++|++++.+
T Consensus 277 MlA---------sGsqDGkIKvWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGl-KSGK~LKEf 344 (508)
T KOG0275|consen 277 MLA---------SGSQDGKIKVWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGL-KSGKCLKEF 344 (508)
T ss_pred Hhh---------ccCcCCcEEEEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecc-ccchhHHHh
Confidence 663 56778899999999999 787777679999999999999999999999999999999 899999887
Q ss_pred cCc---eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcE
Q 000707 653 ALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1341)
Q Consensus 653 ~~~---v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I 729 (1341)
.++ ++...|+ +++.++++++.||+|
T Consensus 345 rGHsSyvn~a~ft----------------------------------------------------~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 345 RGHSSYVNEATFT----------------------------------------------------DDGHHIISASSDGTV 372 (508)
T ss_pred cCccccccceEEc----------------------------------------------------CCCCeEEEecCCccE
Confidence 743 2233333 235678999999999
Q ss_pred EEEEecCC-eeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCceeeec-c--CCCcEEEEEE
Q 000707 730 GVFEVHGR-RIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGHSSQFS-T--HREGIRRIKF 802 (1341)
Q Consensus 730 ~vwdv~~~-~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg~~~~l~-g--H~~~V~~V~f 802 (1341)
++|+.+.. .+..+++. +.+-.|+++-. +..+++.+...++|.+-+++....++|. | -.|..-+...
T Consensus 373 kvW~~KtteC~~Tfk~~-------~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPL-------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred EEecCcchhhhhhccCC-------CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEe
Confidence 99998644 33333221 23445666655 5678999999999999999765577773 2 2345556678
Q ss_pred ccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 803 SP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
||. | .++...+.|+.+..|.+.++. +..++ .-|. ..|..++-+|. +. .||+-+.||.+++|.
T Consensus 446 Spk--G----ewiYcigED~vlYCF~~~sG~-LE~tl-~VhE--kdvIGl~HHPH-----qN-llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 446 SPK--G----EWIYCIGEDGVLYCFSVLSGK-LERTL-PVHE--KDVIGLTHHPH-----QN-LLASYSEDGLLKLWK 507 (508)
T ss_pred cCC--C----cEEEEEccCcEEEEEEeecCc-eeeee-eccc--ccccccccCcc-----cc-hhhhhcccchhhhcC
Confidence 898 5 678888899999999999987 65555 4454 45888888886 33 589999999999995
No 90
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=2.6e-19 Score=218.97 Aligned_cols=263 Identities=14% Similarity=0.133 Sum_probs=183.2
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCCCceeEE-----------EecCCCccceEEEEEcC-CCCEEEEEecCCcEEEEec
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFS-----------AALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~-----------~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~ 326 (1341)
..+++|+.+++++..+.....|+...+..+-. ..+.++...+.++.++| ++++|++++.||+|++|++
T Consensus 26 ~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 26 STALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred ccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 36777877777777777777777654432200 01234567788999999 8899999999999999998
Q ss_pred cCCce-------eeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccc
Q 000707 327 KEGEQ-------VHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLL 399 (1341)
Q Consensus 327 ~~g~~-------~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1341)
.++.. +..+. |+ ...|..+.++|+.
T Consensus 106 ~~~~~~~~~~~~l~~L~---------gH---~~~V~~l~f~P~~------------------------------------ 137 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQ---------GH---TKKVGIVSFHPSA------------------------------------ 137 (493)
T ss_pred CCCccccccCcceEEec---------CC---CCcEEEEEeCcCC------------------------------------
Confidence 75421 11110 10 1134444444321
Q ss_pred cccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCC
Q 000707 400 SKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSN 479 (1341)
Q Consensus 400 ~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1341)
+..|++++.||+|++||+.++....
T Consensus 138 -~~iLaSgs~DgtVrIWDl~tg~~~~------------------------------------------------------ 162 (493)
T PTZ00421 138 -MNVLASAGADMVVNVWDVERGKAVE------------------------------------------------------ 162 (493)
T ss_pred -CCEEEEEeCCCEEEEEECCCCeEEE------------------------------------------------------
Confidence 3489999999999999987543110
Q ss_pred CCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecC
Q 000707 480 STSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHN 559 (1341)
Q Consensus 480 ~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~ 559 (1341)
.+.+|...|++++|+| ++.+||+|+.||+|+|||+.+++.+.++.+|.
T Consensus 163 ----------------~l~~h~~~V~sla~sp----------------dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 163 ----------------VIKCHSDQITSLEWNL----------------DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred ----------------EEcCCCCceEEEEEEC----------------CCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 1234778899999998 58999999999999999999999999999998
Q ss_pred CCe-EEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEEC-CCc
Q 000707 560 GTV-RGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR-DAP 636 (1341)
Q Consensus 560 ~~V-~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~-D~~ 636 (1341)
+.+ ..+.|.+++ .+++.+.+ +..+++|++||+++... ++..........+....|++++++|++++. |+.
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s------~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~ 283 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCS------KSQQRQIMLWDTRKMAS-PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGN 283 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecC------CCCCCeEEEEeCCCCCC-ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCe
Confidence 654 467788765 56665543 23467999999987542 333322223345667789999999998874 999
Q ss_pred EEEEeccCCCceeeecc----CceEEEEEcCC
Q 000707 637 VEVWAMTKNPIMLRSLA----LPFTVLEWTLP 664 (1341)
Q Consensus 637 I~vWDl~~t~~~l~~l~----~~v~~l~wsp~ 664 (1341)
|++||+ .++.++.... .++.+++|.|.
T Consensus 284 Iriwdl-~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 284 IRCFEL-MNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEe-eCCceEEEeeccCCCCCcceEeccc
Confidence 999999 6776655432 23456677653
No 91
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.3e-20 Score=223.79 Aligned_cols=214 Identities=17% Similarity=0.238 Sum_probs=167.5
Q ss_pred eEeec-CCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC---------------
Q 000707 57 ISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL--------------- 120 (1341)
Q Consensus 57 ~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t--------------- 120 (1341)
.|.+. .|.+ .|.+++|||| |++||||+.||.|+||.|..
T Consensus 259 ~Qe~~~ah~g-----------aIw~mKFS~D--------------GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~ 313 (712)
T KOG0283|consen 259 VQEISNAHKG-----------AIWAMKFSHD--------------GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMY 313 (712)
T ss_pred eeccccccCC-----------cEEEEEeCCC--------------CceeeecCCCceEEEEEEeccchhcccccccchhh
Confidence 45566 8998 9999999986 68899999999999999866
Q ss_pred -----------------Ce----------------------------EEEEecCCCCCCCCeeEEEEeecCCCccEEEEE
Q 000707 121 -----------------RS----------------------------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1341)
Q Consensus 121 -----------------g~----------------------------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1341)
.. +++ ++.||.+ -|.+|.||.+ .+|+++
T Consensus 314 ~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~--ef~GHt~-DILDlSWSKn----~fLLSS 386 (712)
T KOG0283|consen 314 FEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFC--EFKGHTA-DILDLSWSKN----NFLLSS 386 (712)
T ss_pred hhhhhccccCccccccccccccccccccccCCccccCCCccccccccchh--hhhccch-hheecccccC----CeeEec
Confidence 00 011 1357888 8999999986 589999
Q ss_pred eCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhh
Q 000707 156 NGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLE 235 (1341)
Q Consensus 156 s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~ 235 (1341)
+-|.||+||++...+|+..+.. .+.|+|++|+|-|.+.|++|+.||.+++|.+.. +++..++| +
T Consensus 387 SMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--------~~Vv~W~D------l- 450 (712)
T KOG0283|consen 387 SMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--------KKVVDWND------L- 450 (712)
T ss_pred cccccEEeecCCCcceeeEEec-CCeeEEEEecccCCCcEeecccccceEEeecCc--------CeeEeehh------h-
Confidence 9999999999999999988875 899999999999999999999999999997533 23222211 1
Q ss_pred hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEec--CCC----ccceEEEEEcC-C
Q 000707 236 RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL--PRG----CAKFLDVLADP-N 308 (1341)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l--~~~----~~~~~~v~~~p-d 308 (1341)
+..|.+++|+|||+..+.|+++|.+++|+....+......+ +++ +..+..+-++| +
T Consensus 451 -----------------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~ 513 (712)
T KOG0283|consen 451 -----------------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGD 513 (712)
T ss_pred -----------------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCC
Confidence 12367889999999999999999999999998777654443 211 12566666665 3
Q ss_pred CCEEEEEecCCcEEEEeccCCceeeee
Q 000707 309 NDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 309 g~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
.+.|...+.|..|||.|.++...++.+
T Consensus 514 ~~~vLVTSnDSrIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 514 PDEVLVTSNDSRIRIYDGRDKDLVHKF 540 (712)
T ss_pred CCeEEEecCCCceEEEeccchhhhhhh
Confidence 345777889999999998765544444
No 92
>PTZ00420 coronin; Provisional
Probab=99.85 E-value=1.6e-19 Score=221.79 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=172.0
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCC-Cc-EEEEecCCcccccCcccCeEEEEEccCCce------eee
Q 000707 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN-SR-LVSFSYSQVNEKSGGYINRLVVTCLRSGIN------RAF 605 (1341)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d-~~-llS~s~d~~~~~sg~~~~~i~lwD~~tG~~------~~l 605 (1341)
.|+.+|.|++|++.....+..+.+|.++|.+++|+|+ +. +++++ .|++|+|||++++.. .++
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS----------~DgtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS----------EDLTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe----------CCCeEEEEECCCCCccccccccce
Confidence 4678899999999888888899999999999999996 44 44443 356999999986521 123
Q ss_pred EEeccCCCCCeEEEEECCCCCEE-EEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 606 RVLQKPERAPIRALRASSSGRYL-LILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 606 ~~l~~~~~~~I~~i~~SpdG~~L-as~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
..+.+ |...|.+|+|+|++.++ ++++.|++|+|||+ ++++.+..+.
T Consensus 119 ~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl-~tg~~~~~i~------------------------------- 165 (568)
T PTZ00420 119 CILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI-ENEKRAFQIN------------------------------- 165 (568)
T ss_pred EEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC-CCCcEEEEEe-------------------------------
Confidence 34445 78899999999998764 68899999999999 5543221110
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
|...|.+++|
T Consensus 166 ---------------------------------------------------------------------~~~~V~Slsws 176 (568)
T PTZ00420 166 ---------------------------------------------------------------------MPKKLSSLKWN 176 (568)
T ss_pred ---------------------------------------------------------------------cCCcEEEEEEC
Confidence 0012556666
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEE-----EccCCCCCCCCCEEEEEECCC----eEEEEECCCC
Q 000707 764 -RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIK-----FSPVVPGDRSRGRIAVLFHDN----TFSVFDLDSQ 832 (1341)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~-----fSP~~~gd~~~~~Las~s~Dg----tI~IWDl~~~ 832 (1341)
+|++|++++.|++|++||+++++ +.++.+|.+.+.... |+|+ + ++|++++.|+ +|+|||+++.
T Consensus 177 pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d--~----~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 177 IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD--D----NYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC--C----CEEEEEEcCCCCccEEEEEECCCC
Confidence 88999999999999999999987 577899998765433 4566 3 6888877664 7999999963
Q ss_pred -CccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCceecccccccchhcccCCCCccccccc
Q 000707 833 -DPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIGYTSQSRAIKERFRPMPLCLPILL 911 (1341)
Q Consensus 833 -~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~~~~~~~~~~~~~~~~~~pv~~~~~l 911 (1341)
+++. .. ..+. ...++-..|.++ ..+++++|+.|++||+|++..+.. .++. +.....|..+..|+
T Consensus 251 ~~pl~-~~-~ld~-~~~~L~p~~D~~-----tg~l~lsGkGD~tIr~~e~~~~~~-~~l~------~~~s~~p~~g~~f~ 315 (568)
T PTZ00420 251 TSALV-TM-SIDN-ASAPLIPHYDES-----TGLIYLIGKGDGNCRYYQHSLGSI-RKVN------EYKSCSPFRSFGFL 315 (568)
T ss_pred CCceE-EE-EecC-CccceEEeeeCC-----CCCEEEEEECCCeEEEEEccCCcE-Eeec------ccccCCCccceEEc
Confidence 3332 21 1111 122333344443 344688999999999999987533 1111 11123466666777
Q ss_pred ccch
Q 000707 912 PTSH 915 (1341)
Q Consensus 912 ~~~~ 915 (1341)
|...
T Consensus 316 Pkr~ 319 (568)
T PTZ00420 316 PKQI 319 (568)
T ss_pred cccc
Confidence 6554
No 93
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-18 Score=190.17 Aligned_cols=279 Identities=14% Similarity=0.163 Sum_probs=210.5
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCC-CcEEEEecC
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN-SRLVSFSYS 579 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d-~~llS~s~d 579 (1341)
...|++|.|++ +|.++++.++|.+|+|||..+|...+++.-+...|..+.|... ..++..+.
T Consensus 14 ~~~i~sl~fs~----------------~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt- 76 (311)
T KOG1446|consen 14 NGKINSLDFSD----------------DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST- 76 (311)
T ss_pred CCceeEEEecC----------------CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC-
Confidence 57899999998 6889999999999999999999999999888888889999654 45554332
Q ss_pred CcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCce-EE
Q 000707 580 QVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-TV 658 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v-~~ 658 (1341)
..|++|+..++.+.+ .+|.+.| |...|..|..+|-+..+++++.|++|++||+ +..++...+.... ..
T Consensus 77 -------k~d~tIryLsl~dNk--ylRYF~G-H~~~V~sL~~sP~~d~FlS~S~D~tvrLWDl-R~~~cqg~l~~~~~pi 145 (311)
T KOG1446|consen 77 -------KEDDTIRYLSLHDNK--YLRYFPG-HKKRVNSLSVSPKDDTFLSSSLDKTVRLWDL-RVKKCQGLLNLSGRPI 145 (311)
T ss_pred -------CCCCceEEEEeecCc--eEEEcCC-CCceEEEEEecCCCCeEEecccCCeEEeeEe-cCCCCceEEecCCCcc
Confidence 346799999999877 8999888 8899999999999999999999999999999 6666654433111 12
Q ss_pred EEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCC-
Q 000707 659 LEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR- 737 (1341)
Q Consensus 659 l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~- 737 (1341)
.++. +.+-.||.+...+.|++||++.-
T Consensus 146 ~AfD----------------------------------------------------p~GLifA~~~~~~~IkLyD~Rs~d 173 (311)
T KOG1446|consen 146 AAFD----------------------------------------------------PEGLIFALANGSELIKLYDLRSFD 173 (311)
T ss_pred eeEC----------------------------------------------------CCCcEEEEecCCCeEEEEEecccC
Confidence 3343 33556777777779999999532
Q ss_pred --eeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcE---EEEEEccCCCCC
Q 000707 738 --RIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGI---RRIKFSPVVPGD 809 (1341)
Q Consensus 738 --~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V---~~V~fSP~~~gd 809 (1341)
.-..+. ++. +-....+.|.| ||+.|+.+...+.+++-|.-+|. ..++.+|...- ....|+|+ +
T Consensus 174 kgPF~tf~--i~~----~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd--s- 244 (311)
T KOG1446|consen 174 KGPFTTFS--ITD----NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD--S- 244 (311)
T ss_pred CCCceeEc--cCC----CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC--C-
Confidence 111111 110 11234566777 99999999999999999999998 56677665443 57789999 5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 810 RSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 810 ~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+++.+++.||+|.+|+++++..+.. + .+-. ++.+..+.|+|. . ..-+++|..+-+|=..
T Consensus 245 ---~Fvl~gs~dg~i~vw~~~tg~~v~~-~-~~~~-~~~~~~~~fnP~-----~---~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 245 ---KFVLSGSDDGTIHVWNLETGKKVAV-L-RGPN-GGPVSCVRFNPR-----Y---AMFVSASSNLVFWLPD 303 (311)
T ss_pred ---cEEEEecCCCcEEEEEcCCCcEeeE-e-cCCC-CCCccccccCCc-----e---eeeeecCceEEEEecc
Confidence 7899999999999999999985543 3 3321 367888889996 2 2345667788888644
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=1.3e-20 Score=210.13 Aligned_cols=238 Identities=12% Similarity=0.100 Sum_probs=197.9
Q ss_pred CCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 25 NNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 25 ~~~~a~~~s~~g--llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
.++.++++.+++ .||.+.++.+++|+..+++...+|.||++ .|++++|.... .
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----------kVt~ak~~~~~--------------~ 274 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----------KVTAAKFKLSH--------------S 274 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhccccc-----------ceeeehhhccc--------------c
Confidence 357899999988 78888899999999999999999999999 99999998642 4
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCce
Q 000707 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYL 182 (1341)
Q Consensus 103 ~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v 182 (1341)
+++||+.|.+|++||+..+.+..+. +.+ . .+.+++.++ ..++|++-|+.|++||.+++.+....+. .+.|
T Consensus 275 ~vVsgs~DRtiK~WDl~k~~C~kt~-l~~--S-~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~-gg~v 344 (459)
T KOG0288|consen 275 RVVSGSADRTIKLWDLQKAYCSKTV-LPG--S-QCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPL-GGRV 344 (459)
T ss_pred ceeeccccchhhhhhhhhhheeccc-ccc--c-cccceEecc-----eeeeecccccceEEEeccCCceeeEeec-Ccce
Confidence 4999999999999999999888775 333 2 578887763 5788999999999999999999998888 5699
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEc
Q 000707 183 SCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFS 262 (1341)
Q Consensus 183 ~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afS 262 (1341)
+++..++ ++..+.+++.|.++.++|+++.. + ...+. -.+. ........+.||
T Consensus 345 tSl~ls~-~g~~lLsssRDdtl~viDlRt~e---I-~~~~s----------A~g~-------------k~asDwtrvvfS 396 (459)
T KOG0288|consen 345 TSLDLSM-DGLELLSSSRDDTLKVIDLRTKE---I-RQTFS----------AEGF-------------KCASDWTRVVFS 396 (459)
T ss_pred eeEeecc-CCeEEeeecCCCceeeeeccccc---E-EEEee----------cccc-------------ccccccceeEEC
Confidence 9999998 99999999999999999876521 1 11110 0000 001135678999
Q ss_pred cCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEe
Q 000707 263 PHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1341)
Q Consensus 263 pdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1341)
||++.+++++.||.|.||++.++++...+...+....+.++.++|-|+.|++++.++.+++|.
T Consensus 397 pd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 397 PDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999999999988887766555799999999999999999999999993
No 95
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=6.2e-20 Score=197.36 Aligned_cols=254 Identities=16% Similarity=0.204 Sum_probs=188.5
Q ss_pred CCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc------------------ceeEeecCCCCCCCCCCCCCCCcEEEEE
Q 000707 23 SRNNFGSADLSPSG-LLAFAS-GSSISILDSRSL------------------QLISTIPIPPPTSAGSVASLSPFVTAVK 82 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~------------------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~ 82 (1341)
|.....+.+||||| |+|+|+ +.+|.|.|++.+ -++++|-.|.+ .|+.+.
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-----------evn~l~ 179 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-----------EVNDLD 179 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-----------ccccee
Confidence 66678899999999 999986 679999998621 24788999998 999999
Q ss_pred EccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEE
Q 000707 83 WIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLS 162 (1341)
Q Consensus 83 ~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~ 162 (1341)
|+|. ..+|+||++|++|+++|+......+-+....... +|.+|.|.|.| ++|+++..-.+++
T Consensus 180 FHPr--------------e~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~-~vrsiSfHPsG---efllvgTdHp~~r 241 (430)
T KOG0640|consen 180 FHPR--------------ETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTE-PVRSISFHPSG---EFLLVGTDHPTLR 241 (430)
T ss_pred ecch--------------hheEEeccCCCeEEEEecccHHHHHHHHHhhccc-eeeeEeecCCC---ceEEEecCCCcee
Confidence 9986 4789999999999999997654433332222234 89999999987 8999998889999
Q ss_pred EEECCCCeEEEEE---eCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 163 LYNTTSASCMWKY---DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 163 lWd~~tg~~i~~~---~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
|||+.|-+|...- +.|.+.|+++.+++ .++.-++++.||.|++||--. .+ .+.++.+..
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS-------~r---------Cv~t~~~AH- 303 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVS-------NR---------CVRTIGNAH- 303 (430)
T ss_pred EEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeecccc-------HH---------HHHHHHhhc-
Confidence 9999988875432 34677999999999 899999999999999998311 11 112222211
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCcc--ceE-EEEEcCCCCEEEEEe
Q 000707 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCA--KFL-DVLADPNNDLLYCAH 316 (1341)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~--~~~-~v~~~pdg~~L~s~~ 316 (1341)
....|.+..|+.+|+.+++.+.|..+++|.+.+|+.+.+....+..+ .+. +-.|.-..+++..-.
T Consensus 304 ------------~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pD 371 (430)
T KOG0640|consen 304 ------------GGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPD 371 (430)
T ss_pred ------------CCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccc
Confidence 12358889999999999999999999999999999988776432111 111 122333344443322
Q ss_pred -cCCcEEEEeccCCceeeee
Q 000707 317 -LDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 317 -~DgtI~lW~~~~g~~~~~~ 335 (1341)
..+++.-||.+++..+..+
T Consensus 372 Eas~slcsWdaRtadr~~l~ 391 (430)
T KOG0640|consen 372 EASNSLCSWDARTADRVALL 391 (430)
T ss_pred cccCceeeccccchhhhhhc
Confidence 3467788999887754443
No 96
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=205.91 Aligned_cols=297 Identities=17% Similarity=0.159 Sum_probs=225.1
Q ss_pred CCccccccccCCCCCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccC
Q 000707 9 ADSWDCNFMLPGPPSRNNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPI 86 (1341)
Q Consensus 9 ~~~~~~~~~lpg~~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~ 86 (1341)
.-.|+-.-..|-+--.+.+.+++|||.- -+|..++-.|.|++..+.+.+.++..-+. .|.++.|-.|
T Consensus 11 ~~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~-----------~v~s~~fR~D 79 (487)
T KOG0310|consen 11 IRYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKD-----------VVYSVDFRSD 79 (487)
T ss_pred chhhhhhcccccccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhcc-----------ceeEEEeecC
Confidence 3349874333333333458999999965 47777888899999999999888877777 8999999876
Q ss_pred CCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEEC
Q 000707 87 TLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT 166 (1341)
Q Consensus 87 ~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~ 166 (1341)
|.+||.|+..|.|+|.|..+...++. +.+|+. ||.-..|+|.++ .+|++|+.|+.+++||+
T Consensus 80 --------------G~LlaaGD~sG~V~vfD~k~r~iLR~--~~ah~a-pv~~~~f~~~d~--t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 80 --------------GRLLAAGDESGHVKVFDMKSRVILRQ--LYAHQA-PVHVTKFSPQDN--TMLVSGSDDKVVKYWDL 140 (487)
T ss_pred --------------CeEEEccCCcCcEEEeccccHHHHHH--HhhccC-ceeEEEecccCC--eEEEecCCCceEEEEEc
Confidence 68999999999999999777555555 478888 999999999763 79999999999999999
Q ss_pred CCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCC
Q 000707 167 TSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLS 246 (1341)
Q Consensus 167 ~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~ 246 (1341)
.++.....+.+|.+.|.|.+++|-.+..+++||-||+|++||.....+ ...++
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~el------------------------ 193 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVEL------------------------ 193 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEe------------------------
Confidence 999876678999999999999998888999999999999999754211 01111
Q ss_pred CCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCce-eEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEe
Q 000707 247 PASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP-LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWR 325 (1341)
Q Consensus 247 p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~-l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~ 325 (1341)
.++.| |-++.|-|.|..+++++. +.|+|||+-+|.. +.... .|...+..+....++..|++++.||.|++++
T Consensus 194 --nhg~p--Ve~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 194 --NHGCP--VESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred --cCCCc--eeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeecccccceEEEE
Confidence 12233 556799999887777754 7899999997644 33222 2345566677777999999999999999999
Q ss_pred ccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEE
Q 000707 326 RKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLI 405 (1341)
Q Consensus 326 ~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 405 (1341)
...-.-++.+ . .|+ .|+.++++|+ +++++
T Consensus 267 ~t~~Kvv~s~---~---------~~~-pvLsiavs~d--------------------------------------d~t~v 295 (487)
T KOG0310|consen 267 TTNYKVVHSW---K---------YPG-PVLSIAVSPD--------------------------------------DQTVV 295 (487)
T ss_pred ccceEEEEee---e---------ccc-ceeeEEecCC--------------------------------------CceEE
Confidence 6554434433 0 122 5666777664 35888
Q ss_pred EEEcCCeEEEEEccc
Q 000707 406 SISDDGKVWNWLLTA 420 (1341)
Q Consensus 406 s~s~DG~I~lWdl~~ 420 (1341)
.|-.||.+-+=+...
T Consensus 296 iGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 296 IGMSNGLVSIRRREV 310 (487)
T ss_pred Eecccceeeeehhhc
Confidence 888999887654443
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.2e-20 Score=217.04 Aligned_cols=238 Identities=13% Similarity=0.201 Sum_probs=202.5
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecC-CCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCC
Q 000707 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPI-PPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSS 100 (1341)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~-H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~ 100 (1341)
.+-+.++.|+++| .||.|. ++.|.|||..+.+.+.++.+ |.+ .|-+++|..
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~-----------rvg~laW~~--------------- 270 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHAS-----------RVGSLAWNS--------------- 270 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCc-----------eeEEEeccC---------------
Confidence 4568899999999 899885 57999999999999999999 887 999999983
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1341)
..|.+|+.||.|.++|++.++.... .+.+|.. .|..|.|++|+ .+||+++.|+.+.|||...-.++.++..|..
T Consensus 271 -~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~q-eVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a 344 (484)
T KOG0305|consen 271 -SVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQ-EVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTA 344 (484)
T ss_pred -ceEEEecCCCcEEEEEEecchhhhh-hhhcccc-eeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccce
Confidence 4699999999999999998876655 3578888 99999999988 8999999999999999988888888999899
Q ss_pred ceEEEEEcCCCCCEEEEEe--CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 181 YLSCIRRNPFDARHFCVLG--LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 181 ~v~~~~fsP~d~~~la~~~--~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
.|..++|+|+....||+|| .|+.|++||.... +.+. . ..+...|..
T Consensus 345 AVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g-------~~i~------------~-------------vdtgsQVcs 392 (484)
T KOG0305|consen 345 AVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG-------ARID------------S-------------VDTGSQVCS 392 (484)
T ss_pred eeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC-------cEec------------c-------------cccCCceee
Confidence 9999999999999999984 4999999997542 1110 0 011236889
Q ss_pred EEEccCCCceEEEE--cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 259 FTFSPHWRHIIFVT--FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 259 ~afSpdg~~l~~~~--~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
+.|+|..+.++++- .++.|.||+..+...+..+. +|...++.++.+|||..+++|+.|.++++|+.=
T Consensus 393 L~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~--gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 393 LIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL--GHTSRVLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred EEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec--CCcceeEEEEECCCCCEEEEecccCcEEecccc
Confidence 99999998888876 46789999999988777665 455778899999999999999999999999874
No 98
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-19 Score=188.59 Aligned_cols=218 Identities=10% Similarity=0.000 Sum_probs=171.6
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee
Q 000707 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ 138 (1341)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~ 138 (1341)
.|.||.. ++|.|++..+ |.+|-|++.|.++.||=..+|+.+-+ +.||++ .|.
T Consensus 5 ~l~GHER-----------plTqiKyN~e--------------GDLlFscaKD~~~~vw~s~nGerlGt--y~GHtG-avW 56 (327)
T KOG0643|consen 5 LLQGHER-----------PLTQIKYNRE--------------GDLLFSCAKDSTPTVWYSLNGERLGT--YDGHTG-AVW 56 (327)
T ss_pred ccccCcc-----------ccceEEecCC--------------CcEEEEecCCCCceEEEecCCceeee--ecCCCc-eEE
Confidence 3789998 8999999986 57899999999999999999999998 589999 999
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeC-----CCeEEEEEecCCc
Q 000707 139 DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGL-----KGLLLSVRVLGQK 213 (1341)
Q Consensus 139 ~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~-----dG~i~~~d~~~~~ 213 (1341)
++.-..+. +.|+++++|.+++|||+.+|+++.+... ..+|..+.|++ ++.++++... .+.|.++|+....
T Consensus 57 ~~Did~~s---~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 57 CCDIDWDS---KHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred EEEecCCc---ceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 98877654 8999999999999999999999988887 67899999998 7777766643 4678887765321
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCcee-EEEe
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL-FSAA 292 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l-~~~~ 292 (1341)
. +...++.. .++. .| ...+.++-++|-++.|+++-.|+.|.+||+++|+.+ ....
T Consensus 132 ~-~~~s~ep~--------~kI~----------t~-----~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 132 S-DIDSEEPY--------LKIP----------TP-----DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred h-hhcccCce--------EEec----------CC-----ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 1 11111100 0000 00 123566789999999999999999999999998654 3323
Q ss_pred cCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 293 LPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 293 l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
. +...+.++-++||+.++++++.|.+-+|||..+-+.+.++
T Consensus 188 ~--h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 188 E--HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred h--hccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 2 3457888999999999999999999999999887655555
No 99
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.85 E-value=1.1e-19 Score=195.58 Aligned_cols=283 Identities=18% Similarity=0.286 Sum_probs=204.0
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-----------------C-cEEEEEeec
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-----------------N-AVTASFSVH 558 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-----------------g-~~~~~l~~H 558 (1341)
+..|.+++.+.+|+| +|.++|+|+.|-.|+|.|++. + .++++|.-|
T Consensus 108 lt~HK~~cR~aafs~----------------DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSP----------------DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred EeecccceeeeeeCC----------------CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 446899999999998 799999999999999999861 1 368899999
Q ss_pred CCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCC-ceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcE
Q 000707 559 NGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG-INRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPV 637 (1341)
Q Consensus 559 ~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG-~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I 637 (1341)
..+|+.+.|.|-..++. +|+.|++|+++|+... .-+.++.++ +..+|++|.|+|.|.||++|....++
T Consensus 172 ~devn~l~FHPre~ILi---------S~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~ 240 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILI---------SGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTL 240 (430)
T ss_pred cCcccceeecchhheEE---------eccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCce
Confidence 99999999999765553 3444679999999542 223455554 45689999999999999999999999
Q ss_pred EEEeccCCCceeeecc------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCC
Q 000707 638 EVWAMTKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEG 711 (1341)
Q Consensus 638 ~vWDl~~t~~~l~~l~------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 711 (1341)
++||+ .+-++.-.-. ..++.+..+
T Consensus 241 rlYdv-~T~QcfvsanPd~qht~ai~~V~Ys------------------------------------------------- 270 (430)
T KOG0640|consen 241 RLYDV-NTYQCFVSANPDDQHTGAITQVRYS------------------------------------------------- 270 (430)
T ss_pred eEEec-cceeEeeecCcccccccceeEEEec-------------------------------------------------
Confidence 99999 5765543211 012222222
Q ss_pred ccCCCCCeEEEEecCCcEEEEEe-cCCeeecccCCCCCCccccccc-eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-
Q 000707 712 SQDDTSESFAFALANGALGVFEV-HGRRIRDFRPKWPSSSFISSDG-LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH- 786 (1341)
Q Consensus 712 s~~~~~e~la~~~~Dg~I~vwdv-~~~~v~~~~~~~~~~~l~~~~~-~v~sla~--dg~~LasGs~DgtI~lWDl~tg~- 786 (1341)
+.+...++++.||.|++||- .++.++.++. .|.+ .|++..| +|++|.+.+.|.++++|.+.+|+
T Consensus 271 ---~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--------AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 271 ---STGSLYVTASKDGAIKLWDGVSNRCVRTIGN--------AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred ---CCccEEEEeccCCcEEeeccccHHHHHHHHh--------hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 33567899999999999995 6666654321 2443 5777778 89999999999999999999998
Q ss_pred eeeeccC--CCcE---EEEEEccCCCCCCCCCEEEEE-ECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCC
Q 000707 787 SSQFSTH--REGI---RRIKFSPVVPGDRSRGRIAVL-FHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTD 860 (1341)
Q Consensus 787 ~~~l~gH--~~~V---~~V~fSP~~~gd~~~~~Las~-s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~ 860 (1341)
+..+.|- +++. +...|... ..+++.- -..+.+.-||.++.+.+. .+..||+ +.+.-+.-+|.
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNht------EdyVl~pDEas~slcsWdaRtadr~~-l~slgHn--~a~R~i~HSP~--- 407 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNHT------EDYVLFPDEASNSLCSWDARTADRVA-LLSLGHN--GAVRWIVHSPV--- 407 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcCc------cceEEccccccCceeeccccchhhhh-hcccCCC--CCceEEEeCCC---
Confidence 4444332 1211 11223222 1333321 134678999999987542 3445786 67888888997
Q ss_pred CCCCeEEEEEECCCcEEEEEcc
Q 000707 861 KNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 861 ~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
.| .+.++|.|-.+|+|--+
T Consensus 408 --~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 --EP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred --CC-ceeeecccceeeeeeec
Confidence 55 46799999999999644
No 100
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.84 E-value=6.1e-20 Score=207.95 Aligned_cols=248 Identities=15% Similarity=0.226 Sum_probs=185.7
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc----------EEEEEeecCCCeEEEEEcC
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA----------VTASFSVHNGTVRGLRWLG 569 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~----------~~~~l~~H~~~V~~l~fs~ 569 (1341)
|.+.|..++.-|- +-.+||+++..+.|.|||.+.-. .-..|.||...=.+|.|++
T Consensus 123 h~gEVnRaRymPQ---------------np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 123 HDGEVNRARYMPQ---------------NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred CCccchhhhhCCC---------------CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccc
Confidence 7889999988772 45799999999999999986432 1126889998888999987
Q ss_pred C--CcEEEEecCCcccccCcccCeEEEEEccCCc-----eeeeEEeccCCCCCeEEEEECCC-CCEEEEEECCCcEEEEe
Q 000707 570 N--SRLVSFSYSQVNEKSGGYINRLVVTCLRSGI-----NRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 570 d--~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~-----~~~l~~l~~~~~~~I~~i~~Spd-G~~Las~s~D~~I~vWD 641 (1341)
. +.+++++. +++|.+||+.... ..+...+.+ |+..|+.++|++. ...+++++.|+.+.|||
T Consensus 188 ~~~g~Lls~~~----------d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 188 QQEGTLLSGSD----------DHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred ccceeEeeccC----------CCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecCCCeEEEEE
Confidence 5 46775443 4589999995422 122233344 7888888888874 45667788888888888
Q ss_pred ccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEE
Q 000707 642 MTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFA 721 (1341)
Q Consensus 642 l~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la 721 (1341)
+ +++ ..+ + .
T Consensus 257 ~-R~~----~~~-~--------~--------------------------------------------------------- 265 (422)
T KOG0264|consen 257 T-RSN----TSK-P--------S--------------------------------------------------------- 265 (422)
T ss_pred c-CCC----CCC-C--------c---------------------------------------------------------
Confidence 7 442 000 0 0
Q ss_pred EEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCC--ceeeeccCCCc
Q 000707 722 FALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTG--HSSQFSTHREG 796 (1341)
Q Consensus 722 ~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg--~~~~l~gH~~~ 796 (1341)
.. -.+|.+.|+|++| ++..||+||.|++|.+||++.- .++++.+|+..
T Consensus 266 ----------------~~-----------~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de 318 (422)
T KOG0264|consen 266 ----------------HS-----------VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE 318 (422)
T ss_pred ----------------cc-----------ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc
Confidence 00 0146677889988 7789999999999999999874 37899999999
Q ss_pred EEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccc---------cc--cc-cCCCCCCcEEEEEEcCCCCCCCCC
Q 000707 797 IRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLA---------NS--LL-QPQFPGTLVLELDWLPTRTDKNDP 864 (1341)
Q Consensus 797 V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~---------~~--l~-~gh~~~~~V~~l~ws~~~~~~g~~ 864 (1341)
|.+|.|||... ..||+++.|+.+.|||+..-..-. .. +. -||. ..|.+++|+|. +|
T Consensus 319 v~~V~WSPh~e-----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~--~kV~DfsWnp~-----eP 386 (422)
T KOG0264|consen 319 VFQVEWSPHNE-----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT--AKVSDFSWNPN-----EP 386 (422)
T ss_pred eEEEEeCCCCC-----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc--cccccccCCCC-----CC
Confidence 99999999843 578999999999999996432110 00 11 2554 67999999997 89
Q ss_pred eEEEEEECCCcEEEEEccC
Q 000707 865 LVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 865 ~~Las~s~DgtIrvWdv~~ 883 (1341)
..++|++.|+.+.||++..
T Consensus 387 W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 387 WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eEEEEecCCceEEEeeccc
Confidence 9999999999999999874
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.84 E-value=3.6e-19 Score=219.56 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=213.2
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEe--CCCcEEEEeCCC------------CcEEEEEeecCCCeEEEEE
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGT--QSGAVDVVDVSA------------NAVTASFSVHNGTVRGLRW 567 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs--~DGtI~lWDl~t------------g~~~~~l~~H~~~V~~l~f 567 (1341)
..|++|+++| ++..+|+|+ .||.++||+.+. ...+.+..-|.+.|.++.|
T Consensus 14 ~~IfSIdv~p----------------dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~ 77 (942)
T KOG0973|consen 14 KSIFSIDVHP----------------DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF 77 (942)
T ss_pred eeEEEEEecC----------------CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE
Confidence 4589999998 799999999 999999999752 1123456789999999999
Q ss_pred cCCCcEEEEecCCcccccCcccCeEEEEEccC----------Cc------eeeeEEeccCCCCCeEEEEECCCCCEEEEE
Q 000707 568 LGNSRLVSFSYSQVNEKSGGYINRLVVTCLRS----------GI------NRAFRVLQKPERAPIRALRASSSGRYLLIL 631 (1341)
Q Consensus 568 s~d~~llS~s~d~~~~~sg~~~~~i~lwD~~t----------G~------~~~l~~l~~~~~~~I~~i~~SpdG~~Las~ 631 (1341)
++||+.++.+ +.|.-|.||.-.. |. .+.+..+++ |...|..+.|+|++.+||++
T Consensus 78 S~dG~~lAsG---------SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 78 SPDGSYLASG---------SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred CCCCCeEeec---------cCcceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEe
Confidence 9999887544 3455788898762 10 135556677 88999999999999999999
Q ss_pred ECCCcEEEEeccCCCceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCC
Q 000707 632 FRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDAS 708 (1341)
Q Consensus 632 s~D~~I~vWDl~~t~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~ 708 (1341)
+.|++|-|||. ++..+++.+.. .|-++.|.|-
T Consensus 148 s~DnsViiwn~-~tF~~~~vl~~H~s~VKGvs~DP~-------------------------------------------- 182 (942)
T KOG0973|consen 148 SLDNSVIIWNA-KTFELLKVLRGHQSLVKGVSWDPI-------------------------------------------- 182 (942)
T ss_pred cccceEEEEcc-ccceeeeeeecccccccceEECCc--------------------------------------------
Confidence 99999999999 78877777663 3456777643
Q ss_pred CCCccCCCCCeEEEEecCCcEEEEEecCCee-ecccCCCCCCccccccceEEEEee--cCCEEEEEeC----CCcEEEEE
Q 000707 709 SEGSQDDTSESFAFALANGALGVFEVHGRRI-RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDR----SGNIRWWD 781 (1341)
Q Consensus 709 ~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v-~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~----DgtI~lWD 781 (1341)
+..||+-+.|++|++|.+..-.+ +....-|... .-.-.+.-++| ||++|++... --++.|.+
T Consensus 183 --------Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~---~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 183 --------GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES---PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred --------cCeeeeecCCceEEEEEcccceeeEeeccchhhC---CCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 57889999999999999743222 1111111100 11123567777 9999998643 33677777
Q ss_pred CCCCc-eeeeccCCCcEEEEEEccCC------CCCCCCC-----EEEEEECCCeEEEEECCCCCccccccccCCC-CCCc
Q 000707 782 VTTGH-SSQFSTHREGIRRIKFSPVV------PGDRSRG-----RIAVLFHDNTFSVFDLDSQDPLANSLLQPQF-PGTL 848 (1341)
Q Consensus 782 l~tg~-~~~l~gH~~~V~~V~fSP~~------~gd~~~~-----~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~-~~~~ 848 (1341)
-.+.+ -..|-||.+++..++|+|-. .|...+. .+|+|+.|++|-||.....+|+.. .|. .+..
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v----i~~lf~~S 327 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV----IHNLFNKS 327 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh----hhhhhcCc
Confidence 76666 45789999999999999821 0111111 468899999999999988776532 222 2467
Q ss_pred EEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 849 VLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 849 V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
|.++.|+|| |- .|..+|.||+|.+.....
T Consensus 328 I~DmsWspd----G~--~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 328 IVDMSWSPD----GF--SLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeeeeEcCC----CC--eEEEEecCCeEEEEEcch
Confidence 999999998 44 577899999999998754
No 102
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.84 E-value=6e-19 Score=187.22 Aligned_cols=279 Identities=13% Similarity=0.204 Sum_probs=204.5
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC-cEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~-~llS 575 (1341)
|+||..++|.|++.. +|.||.+.+.|.++-||-..+|..+.++.||+++|.+++..-+. .+++
T Consensus 6 l~GHERplTqiKyN~----------------eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liT 69 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNR----------------EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLIT 69 (327)
T ss_pred cccCccccceEEecC----------------CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeee
Confidence 678999999999876 69999999999999999999999999999999999999987766 4554
Q ss_pred EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEEC-----CCcEEEEeccCCCc---
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR-----DAPVEVWAMTKNPI--- 647 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~-----D~~I~vWDl~~t~~--- 647 (1341)
|+-|++++|||+++|+ ++..++ -..+|+.+.|+++|++++.... .+.|.++|+ +...
T Consensus 70 ----------GSAD~t~kLWDv~tGk--~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi-~~~~~~~ 134 (327)
T KOG0643|consen 70 ----------GSADQTAKLWDVETGK--QLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI-RDDSSDI 134 (327)
T ss_pred ----------ccccceeEEEEcCCCc--EEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc-cCChhhh
Confidence 4456799999999999 555543 3478999999999999887653 357888988 4221
Q ss_pred ----eeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeE
Q 000707 648 ----MLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1341)
Q Consensus 648 ----~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~l 720 (1341)
++..+. ..++..-|. +-++.+
T Consensus 135 ~s~ep~~kI~t~~skit~a~Wg----------------------------------------------------~l~~~i 162 (327)
T KOG0643|consen 135 DSEEPYLKIPTPDSKITSALWG----------------------------------------------------PLGETI 162 (327)
T ss_pred cccCceEEecCCccceeeeeec----------------------------------------------------ccCCEE
Confidence 122111 112333343 225778
Q ss_pred EEEecCCcEEEEEecC-CeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCc
Q 000707 721 AFALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREG 796 (1341)
Q Consensus 721 a~~~~Dg~I~vwdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~ 796 (1341)
+++..||.|..||+.. ..+.+.. .-|...|+.|.+ |..+.++||.|.+-++||+.+-+ ++++. -..+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~--------~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~P 233 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSD--------EEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERP 233 (327)
T ss_pred EEecCCCcEEEEEcccCceeeech--------hhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccc
Confidence 8899999999999964 4443311 135567999888 88999999999999999999877 45554 4789
Q ss_pred EEEEEEccCCCCCCCCCEEEEE-ECCC-------------eEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCC
Q 000707 797 IRRIKFSPVVPGDRSRGRIAVL-FHDN-------------TFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKN 862 (1341)
Q Consensus 797 V~~V~fSP~~~gd~~~~~Las~-s~Dg-------------tI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g 862 (1341)
|.+.+++|.. ..++.+ +.+- ..|.+++-..|++. ...||. ++|.+++|+|+ |
T Consensus 234 vN~aaisP~~------d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEig--rvkGHF--GPINsvAfhPd----G 299 (327)
T KOG0643|consen 234 VNTAAISPLL------DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIG--RVKGHF--GPINSVAFHPD----G 299 (327)
T ss_pred ccceeccccc------ceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhc--cccccc--cCcceeEECCC----C
Confidence 9999999972 233332 2211 11223332223332 226787 68999999998 7
Q ss_pred CCeEEEEEECCCcEEEEEccC
Q 000707 863 DPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 863 ~~~~Las~s~DgtIrvWdv~~ 883 (1341)
+. .+||+.||.||+.-...
T Consensus 300 ks--YsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 300 KS--YSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cc--cccCCCCceEEEEEecc
Confidence 74 48999999999986553
No 103
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.4e-19 Score=204.12 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=196.1
Q ss_pred CCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 27 FGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
+.+++|=.|| |+|.|. .+.|.|+|..+...+.+|.+|+. +|..++|+|++ +..|
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-----------pv~~~~f~~~d-------------~t~l 126 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-----------PVHVTKFSPQD-------------NTML 126 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccC-----------ceeEEEecccC-------------CeEE
Confidence 4578898899 777774 47999999877777889999998 99999999985 6789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC-eEEEEEeCCCCceE
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SCMWKYDASPEYLS 183 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~i~~~~~~~~~v~ 183 (1341)
++|++|+.+++||+.++.++.. +.+|+. -|.+.+|+|-. +.+++||+.||.|++||+++- ..+..+.. ..+|.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~--l~~htD-YVR~g~~~~~~--~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe 200 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAE--LSGHTD-YVRCGDISPAN--DHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVE 200 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEE--ecCCcc-eeEeeccccCC--CeEEEecCCCceEEEEEeccCCceeEEecC-CCcee
Confidence 9999999999999999886444 689999 89999999975 279999999999999999876 45555554 56899
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEcc
Q 000707 184 CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSP 263 (1341)
Q Consensus 184 ~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSp 263 (1341)
.+-|=| .+.+++++|. ..+++||+.+.. +.. -.. ..|.-.|.+++|..
T Consensus 201 ~vl~lp-sgs~iasAgG-n~vkVWDl~~G~------qll---------~~~---------------~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 201 SVLALP-SGSLIASAGG-NSVKVWDLTTGG------QLL---------TSM---------------FNHNKTVTCLRLAS 248 (487)
T ss_pred eEEEcC-CCCEEEEcCC-CeEEEEEecCCc------eeh---------hhh---------------hcccceEEEEEeec
Confidence 999999 7889988874 689999986421 111 001 11333578889999
Q ss_pred CCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCC
Q 000707 264 HWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1341)
Q Consensus 264 dg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1341)
++..|++++.|+.|+|||+.+-+.+..+..+ ++++++..+||++.++.|-.||.+.+.++..+
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred CCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 9999999999999999998888888877654 78999999999999999999999999866543
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=2.6e-19 Score=210.42 Aligned_cols=214 Identities=17% Similarity=0.196 Sum_probs=173.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEE
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1341)
++.++++|++|++|.+|.+.+......|.||...|.++....++.++|.| +|.++++|-. |+ +...
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgS----------WD~TakvW~~--~~--l~~~ 135 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGS----------WDSTAKVWRI--GE--LVYS 135 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecc----------cccceEEecc--hh--hhcc
Confidence 45678899999999999999999999999999999999987777788654 5569999965 44 3334
Q ss_pred eccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc---eEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 608 l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~---v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
+++ |..+|.++.+-|++ .+++|+.|++||+|. .+++++++..+ |.+++.-++
T Consensus 136 l~g-H~asVWAv~~l~e~-~~vTgsaDKtIklWk---~~~~l~tf~gHtD~VRgL~vl~~-------------------- 190 (745)
T KOG0301|consen 136 LQG-HTASVWAVASLPEN-TYVTGSADKTIKLWK---GGTLLKTFSGHTDCVRGLAVLDD-------------------- 190 (745)
T ss_pred cCC-cchheeeeeecCCC-cEEeccCcceeeecc---CCchhhhhccchhheeeeEEecC--------------------
Confidence 566 99999999999998 788999999999995 46778887743 455555322
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
.+|++++.||.|++|+++|..+..+ .||..-|.+++.
T Consensus 191 ---------------------------------~~flScsNDg~Ir~w~~~ge~l~~~---------~ghtn~vYsis~~ 228 (745)
T KOG0301|consen 191 ---------------------------------SHFLSCSNDGSIRLWDLDGEVLLEM---------HGHTNFVYSISMA 228 (745)
T ss_pred ---------------------------------CCeEeecCCceEEEEeccCceeeee---------eccceEEEEEEec
Confidence 3689999999999999999887642 278888888884
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCceeeeccCCC-cEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 764 -RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHRE-GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~-~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
+++.+++++.|+++++|+.. .+.+.-.|.+ .|+++++-++ +.|++|+.||.||||..+.
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N-------gDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN-------GDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC-------CCEEEeccCceEEEEEecc
Confidence 78899999999999999986 5444333444 8999999888 5699999999999998763
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.6e-18 Score=175.07 Aligned_cols=246 Identities=22% Similarity=0.350 Sum_probs=186.1
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE-----EEEEeecCCCeEEEEEcCC----
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV-----TASFSVHNGTVRGLRWLGN---- 570 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~-----~~~l~~H~~~V~~l~fs~d---- 570 (1341)
|.+.|+|.+|+| .|.++|+|++|.+|++.-.....+ ..+|+-|.+.|+.++|..+
T Consensus 88 hkgsiyc~~ws~----------------~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~ 151 (350)
T KOG0641|consen 88 HKGSIYCTAWSP----------------CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESG 151 (350)
T ss_pred cCccEEEEEecC----------------ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcC
Confidence 788999999999 689999999999999876643322 3578899999999999643
Q ss_pred CcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceee
Q 000707 571 SRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR 650 (1341)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~ 650 (1341)
++++..+ |.-|-.|.+.|-.+|+ .+..+.| |...|.++ ++-.|-.+++|+.|.+|+.||+ +-..+++
T Consensus 152 ~~il~s~--------gagdc~iy~tdc~~g~--~~~a~sg-htghilal-yswn~~m~~sgsqdktirfwdl-rv~~~v~ 218 (350)
T KOG0641|consen 152 GAILASA--------GAGDCKIYITDCGRGQ--GFHALSG-HTGHILAL-YSWNGAMFASGSQDKTIRFWDL-RVNSCVN 218 (350)
T ss_pred ceEEEec--------CCCcceEEEeecCCCC--cceeecC-CcccEEEE-EEecCcEEEccCCCceEEEEee-eccceee
Confidence 3554322 3335689999988888 7877777 88888765 4667889999999999999999 5655555
Q ss_pred eccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEE
Q 000707 651 SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALG 730 (1341)
Q Consensus 651 ~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~ 730 (1341)
++...+ . ||
T Consensus 219 ~l~~~~-----~---------------------------------------------------------------~~--- 227 (350)
T KOG0641|consen 219 TLDNDF-----H---------------------------------------------------------------DG--- 227 (350)
T ss_pred eccCcc-----c---------------------------------------------------------------CC---
Confidence 443111 0 00
Q ss_pred EEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCC
Q 000707 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVP 807 (1341)
Q Consensus 731 vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~ 807 (1341)
.+ .. ..|.+++. .|++|++|..|....+||++.++ +..|.-|...|++|+|||..
T Consensus 228 -------gl------------es--savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a- 285 (350)
T KOG0641|consen 228 -------GL------------ES--SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGA- 285 (350)
T ss_pred -------Cc------------cc--ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCc-
Confidence 00 00 12444554 78999999999999999999988 67788899999999999983
Q ss_pred CCCCCCEEEEEECCCeEEEEECCCCCcccccc----ccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 808 GDRSRGRIAVLFHDNTFSVFDLDSQDPLANSL----LQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 808 gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l----~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
-+|+++++|..|++=|+... +...+ ...|. ..+..+.|+|. .+.+++.++|.++.+|-+.
T Consensus 286 -----~yllt~syd~~ikltdlqgd--la~el~~~vv~ehk--dk~i~~rwh~~------d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 286 -----HYLLTCSYDMKIKLTDLQGD--LAHELPIMVVAEHK--DKAIQCRWHPQ------DFSFISSSADKTATLWALN 349 (350)
T ss_pred -----eEEEEecccceEEEeecccc--hhhcCceEEEEecc--CceEEEEecCc------cceeeeccCcceEEEeccC
Confidence 57999999999999998653 22222 12343 57889999996 3467899999999999764
No 106
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.8e-19 Score=190.04 Aligned_cols=238 Identities=15% Similarity=0.213 Sum_probs=184.0
Q ss_pred CCceEeCCCC---eEEEEcCCeEEEEeCC-CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 27 FGSADLSPSG---LLAFASGSSISILDSR-SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 27 ~~a~~~s~~g---llA~gs~~~V~v~d~~-~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
+--++||++- ++|..++++++|||.. ....++.++.|+. .|.+|.|.+-. +.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-----------EV~Svdwn~~~-------------r~ 118 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-----------EVYSVDWNTVR-------------RR 118 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhh-----------heEEecccccc-------------ce
Confidence 3468999864 5555567899999943 3457899999998 99999999853 56
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCce
Q 000707 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYL 182 (1341)
Q Consensus 103 ~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v 182 (1341)
.+++++.||+|+|||..-+..+++| .||.. -|...+|+|..+ .+++++++|+++++||++...+...+..|...+
T Consensus 119 ~~ltsSWD~TiKLW~~~r~~Sv~Tf--~gh~~-~Iy~a~~sp~~~--nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei 193 (311)
T KOG0277|consen 119 IFLTSSWDGTIKLWDPNRPNSVQTF--NGHNS-CIYQAAFSPHIP--NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI 193 (311)
T ss_pred eEEeeccCCceEeecCCCCcceEee--cCCcc-EEEEEecCCCCC--CeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence 6777799999999999888888885 78877 899999999874 899999999999999998443333477777789
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEecC-CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000707 183 SCIRRNPFDARHFCVLGLKGLLLSVRVLG-QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1341)
Q Consensus 183 ~~~~fsP~d~~~la~~~~dG~i~~~d~~~-~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~af 261 (1341)
.|+.|+.++.+.+++++.|+.|+.||+.. ..+ +..|. ++...|.++.|
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----------------l~eL~---------------gh~~AVRkvk~ 242 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----------------LFELN---------------GHGLAVRKVKF 242 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhcccc----------------ceeec---------------CCceEEEEEec
Confidence 99999999999999999999999999754 111 11111 23345788999
Q ss_pred ccCCC-ceEEEEcCCeEEEEEcCCCce-eEEEecCCCccceEEEEEcC-CCCEEEEEecCCcEEEEec
Q 000707 262 SPHWR-HIIFVTFPRELVVFDLQYETP-LFSAALPRGCAKFLDVLADP-NNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 262 Spdg~-~l~~~~~d~~I~iwDl~t~~~-l~~~~l~~~~~~~~~v~~~p-dg~~L~s~~~DgtI~lW~~ 326 (1341)
||... -|+++++|-+++|||.+.+.- +.+.. ++..-+..+-+++ ++..+|+.+-|+.+.||+.
T Consensus 243 Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~--~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 243 SPHHASLLASASYDMTVRIWDPERQDSAIETVD--HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred CcchhhHhhhccccceEEecccccchhhhhhhh--ccceEEeccccccccCceeeecccccceeeecc
Confidence 99865 457788999999999996543 33332 2333333444443 6779999999999999984
No 107
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=1.9e-17 Score=191.12 Aligned_cols=232 Identities=16% Similarity=0.207 Sum_probs=161.9
Q ss_pred eEEEEc---CCeEEEEeCC----CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeC
Q 000707 37 LLAFAS---GSSISILDSR----SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1341)
Q Consensus 37 llA~gs---~~~V~v~d~~----~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1341)
++||-. ++.+-|.-.. .-+.+-.|.+|.+ .|+-+.|+|-. ..+||+|+.
T Consensus 45 flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d-----------~VtDl~FspF~-------------D~LLAT~S~ 100 (1012)
T KOG1445|consen 45 FLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGD-----------QVTDLGFSPFA-------------DELLATCSR 100 (1012)
T ss_pred eEEEeecCCCceEEEEeccccCccccccceeecccc-----------eeeccCccccc-------------hhhhhcccC
Confidence 677743 4455554332 1234667889998 99999999963 568999999
Q ss_pred CCcEEEEeCCCCeEEEEec----CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000707 110 HGRVALLDFRLRSVVLWID----PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCI 185 (1341)
Q Consensus 110 dG~I~vWDv~tg~~~~~l~----~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~ 185 (1341)
|..|+||.+..|-... +. .-+|....|.++.|.|..+ .+|++++ -+++.|||+.+++.+..+.+|.+.|.+.
T Consensus 101 D~~VKiW~lp~g~~q~-LSape~~~g~~~~~vE~l~fHpTaD--gil~s~a-~g~v~i~D~stqk~~~el~~h~d~vQSa 176 (1012)
T KOG1445|consen 101 DEPVKIWKLPRGHSQK-LSAPEIDVGGGNVIVECLRFHPTAD--GILASGA-HGSVYITDISTQKTAVELSGHTDKVQSA 176 (1012)
T ss_pred CCeeEEEecCCCcccc-cCCcceeecCCceEEEEeecccCcC--ceEEecc-CceEEEEEcccCceeecccCCchhhhcc
Confidence 9999999997553221 11 1245555889999999864 4666654 6899999999999999999999999999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 186 ~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
.|+- |+..|++.+.|..|+++|...... . ++..++|-. ..-.++.|.-++
T Consensus 177 ~Wse-DG~llatscKdkqirifDPRa~~~-p--------------iQ~te~H~~--------------~rdsRv~w~Gn~ 226 (1012)
T KOG1445|consen 177 DWSE-DGKLLATSCKDKQIRIFDPRASME-P--------------IQTTEGHGG--------------MRDSRVLWAGNW 226 (1012)
T ss_pred cccc-CCceEeeecCCcceEEeCCccCCC-c--------------ccccccccc--------------chhheeeeccch
Confidence 9998 999999999999999998654211 0 111121100 011256788888
Q ss_pred CceEEEEcC----CeEEEEEcC-CCceeEEEecCCCccceEEEEEcCCCCEEEEEe-cCCcEEEEecc
Q 000707 266 RHIIFVTFP----RELVVFDLQ-YETPLFSAALPRGCAKFLDVLADPNNDLLYCAH-LDGKLSIWRRK 327 (1341)
Q Consensus 266 ~~l~~~~~d----~~I~iwDl~-t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~-~DgtI~lW~~~ 327 (1341)
.+|++.+++ ++|++||.. -+..++++.+.... .++-=.+.||.+.|+-++ .+.+|....+.
T Consensus 227 ~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 227 ERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred hhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 899998876 789999997 46777777765332 333334578888766544 44555555443
No 108
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.9e-18 Score=185.44 Aligned_cols=318 Identities=15% Similarity=0.185 Sum_probs=204.0
Q ss_pred CcEEEEeCCCCeEEEEec---CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC-----eEEE-EEeCCCCc
Q 000707 111 GRVALLDFRLRSVVLWID---PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-----SCMW-KYDASPEY 181 (1341)
Q Consensus 111 G~I~vWDv~tg~~~~~l~---~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-----~~i~-~~~~~~~~ 181 (1341)
.++.-|+.......+.+. +++|.+ .|++++|+.|| ..||++++|++|+||+++.= +++. ++++ +.
T Consensus 61 qr~~~~k~~q~~f~Hpl~~~~LKgH~~-~vt~~~FsSdG---K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~--dh 134 (420)
T KOG2096|consen 61 QRNDQWKAKQPTFVHPLNVSVLKGHKK-EVTDVAFSSDG---KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY--DH 134 (420)
T ss_pred cchhhhcccCCCcccchhhhhhhccCC-ceeeeEEcCCC---ceeEEEeCCceEEEEecchhhhhhhhHhhccccC--CC
Confidence 346678877665554432 478988 99999999987 89999999999999999732 2222 2222 34
Q ss_pred eEEEEEcCCCCCEEEEEeCCC-eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000707 182 LSCIRRNPFDARHFCVLGLKG-LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG-~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1341)
.+.++|.| |.+-+++....| .++++...-+... ...+.-+ +|+.- . =...+...++.+-
T Consensus 135 pT~V~Fap-Dc~s~vv~~~~g~~l~vyk~~K~~dG------------~~~~~~v--~~D~~----~-f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 135 PTRVVFAP-DCKSVVVSVKRGNKLCVYKLVKKTDG------------SGSHHFV--HIDNL----E-FERKHQVDIINIG 194 (420)
T ss_pred ceEEEECC-CcceEEEEEccCCEEEEEEeeecccC------------CCCcccc--ccccc----c-cchhcccceEEEe
Confidence 57899999 887777765544 5556543211100 0000000 00000 0 0012233466667
Q ss_pred EccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccc
Q 000707 261 FSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEE 340 (1341)
Q Consensus 261 fSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~ 340 (1341)
..-.++.|++++.|.+|.|||++ |+.++.+.. +...-...+.+|+|++|++++---
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--nq~~n~~aavSP~GRFia~~gFTp--------------------- 250 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--NQSSNYDAAVSPDGRFIAVSGFTP--------------------- 250 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cceeeeecc--ccccccceeeCCCCcEEEEecCCC---------------------
Confidence 77888999999999999999999 888876532 222223334455666555554444
Q ss_pred cccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccc
Q 000707 341 LIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTA 420 (1341)
Q Consensus 341 ~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~ 420 (1341)
.|++|++--
T Consensus 251 -----------------------------------------------------------------------DVkVwE~~f 259 (420)
T KOG2096|consen 251 -----------------------------------------------------------------------DVKVWEPIF 259 (420)
T ss_pred -----------------------------------------------------------------------CceEEEEEe
Confidence 444454321
Q ss_pred cccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeecccc
Q 000707 421 EGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQIL 500 (1341)
Q Consensus 421 ~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~ 500 (1341)
.+ .|+- |++.--| +|.||
T Consensus 260 ~k----------------------dG~f------------------------------------qev~rvf----~LkGH 277 (420)
T KOG2096|consen 260 TK----------------------DGTF------------------------------------QEVKRVF----SLKGH 277 (420)
T ss_pred cc----------------------Ccch------------------------------------hhhhhhh----eeccc
Confidence 11 0100 0000012 24569
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-------cEEEEEe--ec---CCCeEEEEEc
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-------AVTASFS--VH---NGTVRGLRWL 568 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-------~~~~~l~--~H---~~~V~~l~fs 568 (1341)
.+.|++++|+| +...+++.+.||++||||..-. +.+++.. -| ..++ .|+.+
T Consensus 278 ~saV~~~aFsn----------------~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~ls 340 (420)
T KOG2096|consen 278 QSAVLAAAFSN----------------SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELS 340 (420)
T ss_pred hhheeeeeeCC----------------CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeC
Confidence 99999999998 5789999999999999998522 1233321 12 2344 78999
Q ss_pred CCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEe
Q 000707 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWD 641 (1341)
|.+..++.++.. ++++++.++|+ ..-.+...|...|.+|.|+++|+|+++++ |+-++|.-
T Consensus 341 P~g~~lA~s~gs----------~l~~~~se~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 341 PSGDSLAVSFGS----------DLKVFASEDGK--DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCcEEEeecCC----------ceEEEEcccCc--cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 999888777643 79999999987 34444455888999999999999999985 67777765
No 109
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=3.2e-17 Score=188.51 Aligned_cols=191 Identities=6% Similarity=0.075 Sum_probs=137.1
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1341)
.+++|++.||+|++||..+++.+..+. .+ . .+..++|+|++. .++++++.++.|.+||+.+++.+..+..+ ..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~--~~-~-~~~~l~~~~dg~--~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~ 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFP--VG-Q-RPRGITLSKDGK--LLYVCASDSDTIQVIDLATGEVIGTLPSG-PD 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEE--CC-C-CCCceEECCCCC--EEEEEECCCCeEEEEECCCCcEEEeccCC-CC
Confidence 568999999999999999998888763 33 3 467899999871 34467778899999999999887666553 33
Q ss_pred eEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000707 182 LSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1341)
+..++|+| +++.+++. +.++.+.+||+..... ...+. .......++
T Consensus 75 ~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~----~~~~~----------------------------~~~~~~~~~ 121 (300)
T TIGR03866 75 PELFALHP-NGKILYIANEDDNLVTVIDIETRKV----LAEIP----------------------------VGVEPEGMA 121 (300)
T ss_pred ccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeE----EeEee----------------------------CCCCcceEE
Confidence 56789999 77777655 5689999999754210 11110 001134579
Q ss_pred EccCCCceEEEEcCC-eEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEE-EecCCcEEEEeccCCceeeee
Q 000707 261 FSPHWRHIIFVTFPR-ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 261 fSpdg~~l~~~~~d~-~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
|+|||+.++++..++ .+.+||.++++.+..+... .....+.++|||+.|+. +..||.|++||.++++.+..+
T Consensus 122 ~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 122 VSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD---QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI 195 (300)
T ss_pred ECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC---CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence 999999998888764 5778899988776554432 22345778899998854 456999999999988654433
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.82 E-value=2.2e-18 Score=193.15 Aligned_cols=274 Identities=14% Similarity=0.240 Sum_probs=207.5
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEE-EEecCC
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLV-SFSYSQ 580 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~ll-S~s~d~ 580 (1341)
..++++...| ..+.+.+|+.|.++.++|..+++++..|.||+..|+.+.|+++...+ +.+.
T Consensus 220 pgi~ald~~~----------------s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa-- 281 (506)
T KOG0289|consen 220 PGITALDIIP----------------SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA-- 281 (506)
T ss_pred CCeeEEeecC----------------CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC--
Confidence 3477777666 24678999999999999999999999999999999999999987544 3333
Q ss_pred cccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC-----c
Q 000707 581 VNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL-----P 655 (1341)
Q Consensus 581 ~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~-----~ 655 (1341)
+..|+||.+....... ..+ +|+.+|+.+..+|.|.||++++.|++.-.-|+ +++..+..... .
T Consensus 282 --------d~~i~vws~~~~s~~~--~~~-~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~-~~g~~lt~vs~~~s~v~ 349 (506)
T KOG0289|consen 282 --------DEIIRVWSVPLSSEPT--SSR-PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI-SSGSQLTVVSDETSDVE 349 (506)
T ss_pred --------cceEEeeccccccCcc--ccc-cccccceeeeeccCCcEEEEecCCceEEEEEc-cCCcEEEEEeeccccce
Confidence 3489999986654222 222 48899999999999999999999999999999 78877654432 2
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
+++.+|+|| +-.|+++..||.+++||+.
T Consensus 350 ~ts~~fHpD----------------------------------------------------gLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 350 YTSAAFHPD----------------------------------------------------GLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred eEEeeEcCC----------------------------------------------------ceEEeccCCCceEEEEEcC
Confidence 567777765 4567889999999999996
Q ss_pred CCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeecc-CCCcEEEEEEccCCCCCCC
Q 000707 736 GRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFST-HREGIRRIKFSPVVPGDRS 811 (1341)
Q Consensus 736 ~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~g-H~~~V~~V~fSP~~~gd~~ 811 (1341)
.+.. ..+|| +|.+.|.+++| +|-+||++..|+.|++||++.-+ ..++.- -...|.++.|.+. |
T Consensus 378 s~~~---~a~Fp-----ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S--G--- 444 (506)
T KOG0289|consen 378 SQTN---VAKFP-----GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS--G--- 444 (506)
T ss_pred Cccc---cccCC-----CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC--C---
Confidence 5432 13444 68899999999 89999999999999999998754 444422 2337999999887 5
Q ss_pred CCEEEEEECCCeEEEEECCCC--CccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEc
Q 000707 812 RGRIAVLFHDNTFSVFDLDSQ--DPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEV 881 (1341)
Q Consensus 812 ~~~Las~s~DgtI~IWDl~~~--~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv 881 (1341)
++|+.++.|=.|.+++-.+. .++. .+ .-|. +....+.|... -.+|+++|.|..+|++.+
T Consensus 445 -t~L~~~g~~l~Vy~~~k~~k~W~~~~-~~-~~~s--g~st~v~Fg~~------aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 445 -TYLGIAGSDLQVYICKKKTKSWTEIK-EL-ADHS--GLSTGVRFGEH------AQYLASTSMDAILRLYAL 505 (506)
T ss_pred -CeEEeecceeEEEEEecccccceeee-hh-hhcc--cccceeeeccc------ceEEeeccchhheEEeec
Confidence 78888877766666663333 2221 12 2333 46677777654 237999999999999864
No 111
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=6.4e-19 Score=200.50 Aligned_cols=256 Identities=19% Similarity=0.196 Sum_probs=182.7
Q ss_pred CcEEEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccC--CceeeeEEeccCCCCCeEEEEECCCC
Q 000707 549 NAVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVLQKPERAPIRALRASSSG 625 (1341)
Q Consensus 549 g~~~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l~~~~~~~I~~i~~SpdG 625 (1341)
+.....|.+|+..|.++++.|.| |++| |++|.+|++||+.. ...+.+|.++-.+..+|++++||+.|
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~s----------Gs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVS----------GSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG 226 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeee----------ccccceEEEEecccccccchhhhccCcccccccceeeecCCC
Confidence 34556788999999999999877 7775 55667999999953 22345776665567789999999999
Q ss_pred CEEEEEECCCcEEEEeccCCCcee-eecc------------Cc---eEEEEEcCCCCCCCCCCCCCcccccccCCCCCcc
Q 000707 626 RYLLILFRDAPVEVWAMTKNPIML-RSLA------------LP---FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADT 689 (1341)
Q Consensus 626 ~~Las~s~D~~I~vWDl~~t~~~l-~~l~------------~~---v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~ 689 (1341)
..|++.+.....+|+|- .|..+ ...+ ++ +++.+|+|.
T Consensus 227 ~~iLvvsg~aqakl~DR--dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~------------------------- 279 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDR--DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD------------------------- 279 (641)
T ss_pred CeEEEEecCcceeEEcc--CCceeeeeeccchhhhhhhccCCceeeeeccccccC-------------------------
Confidence 99999998899999995 43322 2111 11 355667654
Q ss_pred CCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCe--eecccCCCCCCccccccceEEEEee--cC
Q 000707 690 TDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR--IRDFRPKWPSSSFISSDGLITAMAY--RL 765 (1341)
Q Consensus 690 ~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~--v~~~~~~~~~~~l~~~~~~v~sla~--dg 765 (1341)
..+.|.+++.||++|+|+++..+ ..-++++..+ +.--.+++.+| ||
T Consensus 280 --------------------------~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~----g~Rv~~tsC~~nrdg 329 (641)
T KOG0772|consen 280 --------------------------NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG----GKRVPVTSCAWNRDG 329 (641)
T ss_pred --------------------------cccceEEecCCCcEEEEecCCchhheeEEeeccCC----CcccCceeeecCCCc
Confidence 13668999999999999995422 1112222211 22234677888 99
Q ss_pred CEEEEEeCCCcEEEEECCCCcee----eeccCCC--cEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccccc
Q 000707 766 PHVVMGDRSGNIRWWDVTTGHSS----QFSTHRE--GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSL 839 (1341)
Q Consensus 766 ~~LasGs~DgtI~lWDl~tg~~~----~l~gH~~--~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l 839 (1341)
+.+|+|..||.|.+||....-.+ .-..|.. .|++|+||++ | ++|++=+.|+++++||+++........
T Consensus 330 ~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~d--g----~~LlSRg~D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 330 KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYD--G----NYLLSRGFDDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccc--c----chhhhccCCCceeeeeccccccchhhh
Confidence 99999999999999998554322 2267877 9999999999 5 789999999999999999886433332
Q ss_pred ccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEEC------CCcEEEEEccCC
Q 000707 840 LQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA------DSSFRLIEVNTE 884 (1341)
Q Consensus 840 ~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~------DgtIrvWdv~~~ 884 (1341)
.|-.....-+++.|+|+ +. +|++|.. -|++.++|..+-
T Consensus 404 -tgL~t~~~~tdc~FSPd-----~k-li~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 404 -TGLPTPFPGTDCCFSPD-----DK-LILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred -cCCCccCCCCccccCCC-----ce-EEEecccccCCCCCceEEEEeccce
Confidence 23222244578999998 44 4566643 566888886553
No 112
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.81 E-value=2.8e-18 Score=195.33 Aligned_cols=215 Identities=14% Similarity=0.147 Sum_probs=157.0
Q ss_pred EeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe----EEEEecCCCCC
Q 000707 58 STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS----VVLWIDPDPNP 133 (1341)
Q Consensus 58 ~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~----~~~~l~~~~h~ 133 (1341)
..|++|+. .|+++++-| .|.+|+||+.|-+|++||+..-. ..+.+ .+...
T Consensus 161 i~l~hgtk-----------~Vsal~~Dp--------------~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l-~P~E~ 214 (641)
T KOG0772|consen 161 IQLKHGTK-----------IVSALAVDP--------------SGARFVSGSLDYTVKFWDFQGMDASMRSFRQL-QPCET 214 (641)
T ss_pred EeccCCce-----------EEEEeeecC--------------CCceeeeccccceEEEEecccccccchhhhcc-Ccccc
Confidence 45888988 899999875 47899999999999999996432 22222 12223
Q ss_pred CCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-------------EEeCCCCceEEEEEcCCCCCEEEEEeC
Q 000707 134 KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-------------KYDASPEYLSCIRRNPFDARHFCVLGL 200 (1341)
Q Consensus 134 ~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-------------~~~~~~~~v~~~~fsP~d~~~la~~~~ 200 (1341)
. .|+.++|++.+ ..|++.++....+|.|-+ |..+. ...+|.-.++|.+|.|+....|.+++.
T Consensus 215 h-~i~sl~ys~Tg---~~iLvvsg~aqakl~DRd-G~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~ 289 (641)
T KOG0772|consen 215 H-QINSLQYSVTG---DQILVVSGSAQAKLLDRD-GFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSY 289 (641)
T ss_pred c-ccceeeecCCC---CeEEEEecCcceeEEccC-CceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecC
Confidence 3 89999999987 566667778889999975 43221 224566688999999999999999999
Q ss_pred CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEE
Q 000707 201 KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVF 280 (1341)
Q Consensus 201 dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iw 280 (1341)
||++++||+..... ..++ |.+ .+ .......+..|+|+|||+.++.+..||.|.+|
T Consensus 290 DgtlRiWdv~~~k~----q~qV-ik~-------------------k~-~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W 344 (641)
T KOG0772|consen 290 DGTLRIWDVNNTKS----QLQV-IKT-------------------KP-AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIW 344 (641)
T ss_pred CCcEEEEecCCchh----heeE-Eee-------------------cc-CCCcccCceeeecCCCcchhhhcccCCceeee
Confidence 99999999855211 1111 110 00 11223346678999999999999999999999
Q ss_pred EcCCCce---eEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 281 DLQYETP---LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 281 Dl~t~~~---l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
|...... ..+-..|.....+.++.|++||++|++=+.|+++++||.+.
T Consensus 345 ~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq 395 (641)
T KOG0772|consen 345 DKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ 395 (641)
T ss_pred ecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence 9753322 22222244445788999999999999999999999999874
No 113
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.6e-18 Score=182.03 Aligned_cols=251 Identities=16% Similarity=0.283 Sum_probs=184.9
Q ss_pred eecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCeEEEEEccCCc-eeeeEEeccCCCCCeEEEEECC--CCCEEEEE
Q 000707 556 SVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI-NRAFRVLQKPERAPIRALRASS--SGRYLLIL 631 (1341)
Q Consensus 556 ~~H~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~-~~~l~~l~~~~~~~I~~i~~Sp--dG~~Las~ 631 (1341)
..|...|.++...= +.|+++++.| ++|+|+.++.+. .+.+.+|.| |.+||..++|-. -|.+||++
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD----------~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSD----------GTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCC----------ccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEe
Confidence 46888787766543 3477776654 489999997643 467888888 999999999976 79999999
Q ss_pred ECCCcEEEEeccCCCceeeecc-----CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcC
Q 000707 632 FRDAPVEVWAMTKNPIMLRSLA-----LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKD 706 (1341)
Q Consensus 632 s~D~~I~vWDl~~t~~~l~~l~-----~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~ 706 (1341)
+.|+.|-||.- .+++--+.+. ..+++++|.|.
T Consensus 77 sYDgkVIiWke-~~g~w~k~~e~~~h~~SVNsV~waph------------------------------------------ 113 (299)
T KOG1332|consen 77 SYDGKVIIWKE-ENGRWTKAYEHAAHSASVNSVAWAPH------------------------------------------ 113 (299)
T ss_pred ecCceEEEEec-CCCchhhhhhhhhhcccceeeccccc------------------------------------------
Confidence 99999999987 4664322221 34678888754
Q ss_pred CCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-----cC-----------CEEEE
Q 000707 707 ASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-----RL-----------PHVVM 770 (1341)
Q Consensus 707 ~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-----dg-----------~~Las 770 (1341)
.-+-.||.++.||.|.+++.+.....+ ..++.. .|.--|++++| .| +.||+
T Consensus 114 --------eygl~LacasSDG~vsvl~~~~~g~w~-t~ki~~----aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS 180 (299)
T KOG1332|consen 114 --------EYGLLLACASSDGKVSVLTYDSSGGWT-TSKIVF----AHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS 180 (299)
T ss_pred --------ccceEEEEeeCCCcEEEEEEcCCCCcc-chhhhh----ccccccceeeecCcCCCccccccCcccccceeec
Confidence 114568999999999999985431111 112111 35555788888 34 57999
Q ss_pred EeCCCcEEEEECCCCc---eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCC-CccccccccCCCCC
Q 000707 771 GDRSGNIRWWDVTTGH---SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ-DPLANSLLQPQFPG 846 (1341)
Q Consensus 771 Gs~DgtI~lWDl~tg~---~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~-~~l~~~l~~gh~~~ 846 (1341)
|+.|++|+||+...+. -++|.+|+++|+.|+|.|..+ .....||+++.||++.||..+.. ++-..+++.. ..
T Consensus 181 gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g--l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~--f~ 256 (299)
T KOG1332|consen 181 GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG--LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEE--FP 256 (299)
T ss_pred cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC--CCceeeEEecCCCcEEEEEecCccCccccccccc--CC
Confidence 9999999999998865 356899999999999999843 23457999999999999977632 2222333322 23
Q ss_pred CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 847 ~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
..++.+.|++. |. .|+.++.|+.|.+|.=..
T Consensus 257 ~~~w~vSWS~s----Gn--~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 257 DVVWRVSWSLS----GN--ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cceEEEEEecc----cc--EEEEecCCcEEEEEEeCC
Confidence 57999999997 66 789999999999997554
No 114
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=4.2e-17 Score=188.38 Aligned_cols=122 Identities=17% Similarity=0.198 Sum_probs=98.3
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-------EEEEEeecCCCeEEEEEcCCC--c
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-------VTASFSVHNGTVRGLRWLGNS--R 572 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-------~~~~l~~H~~~V~~l~fs~d~--~ 572 (1341)
..|+.+.|.| .+...||+|++||.|+||.+.++- ..+.+.+|...|++|.|.|-. .
T Consensus 628 t~vtDl~WdP---------------FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadv 692 (1012)
T KOG1445|consen 628 TLVTDLHWDP---------------FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADV 692 (1012)
T ss_pred ceeeecccCC---------------CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhH
Confidence 4688899998 267889999999999999997653 357889999999999998843 3
Q ss_pred EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee
Q 000707 573 LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1341)
Q Consensus 573 llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~ 651 (1341)
+++ .+||.+|+|||+++++.+ ..+.+ |.+.|..++|||||+.+|+...|++|+|+...+..+.++.
T Consensus 693 La~----------asyd~Ti~lWDl~~~~~~--~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 693 LAV----------ASYDSTIELWDLANAKLY--SRLVG-HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred hhh----------hhccceeeeeehhhhhhh--heecc-CcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 343 345669999999998732 23456 8999999999999999999999999999998433444444
No 115
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=5.8e-18 Score=182.31 Aligned_cols=325 Identities=16% Similarity=0.174 Sum_probs=210.4
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcc
Q 000707 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1341)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~ 373 (1341)
.++...++.|+......++.+++.|.+-+||.+++|.|+..+.+ +. | +|..+.|.++
T Consensus 145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~-----G------SVNsikfh~s----------- 201 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HT-----G------SVNSIKFHNS----------- 201 (481)
T ss_pred cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cc-----c------ceeeEEeccc-----------
Confidence 45667888888776667999999999999999999998776632 11 1 3444444432
Q ss_pred cCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCc
Q 000707 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1341)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~ 453 (1341)
+..++++|.|++-.+|.....-..-. .+...+++ ++.-. ..
T Consensus 202 ---------------------------~~L~lTaSGD~taHIW~~av~~~vP~--~~a~~~hS---------sEeE~-e~ 242 (481)
T KOG0300|consen 202 ---------------------------GLLLLTASGDETAHIWKAAVNWEVPS--NNAPSDHS---------SEEEE-EH 242 (481)
T ss_pred ---------------------------cceEEEccCCcchHHHHHhhcCcCCC--CCCCCCCC---------chhhh-hc
Confidence 56899999999999998432210000 00000000 00000 00
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCccccc-eeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEE
Q 000707 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMS-FKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLV 532 (1341)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~ll 532 (1341)
++...+ ... .+...+++ ++. -.-.|.||.+.|.+..|-. .|+.+
T Consensus 243 sDe~~~-----------d~d-------~~~~sD~~tiRv-Pl~~ltgH~~vV~a~dWL~----------------gg~Q~ 287 (481)
T KOG0300|consen 243 SDEHNR-----------DTD-------SSEKSDGHTIRV-PLMRLTGHRAVVSACDWLA----------------GGQQM 287 (481)
T ss_pred cccccc-----------ccc-------cccccCCceeee-eeeeeeccccceEehhhhc----------------Cccee
Confidence 000000 000 00011221 222 1223456888888766654 58899
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCC
Q 000707 533 ALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPE 612 (1341)
Q Consensus 533 AsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~ 612 (1341)
++|+.|.+..+||+++|.++..|.||....+-+.-.|..+++..+.- |.+.++||++.. ...+.+++| |
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr---------DtTFRLWDFRea-I~sV~VFQG-H 356 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR---------DTTFRLWDFREA-IQSVAVFQG-H 356 (481)
T ss_pred eeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc---------CceeEeccchhh-cceeeeecc-c
Confidence 99999999999999999999999999999988888888887754432 348999999843 334566777 8
Q ss_pred CCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc-eeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCcc
Q 000707 613 RAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI-MLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADT 689 (1341)
Q Consensus 613 ~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~-~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~ 689 (1341)
...|+++.|.-|. .+++|+.|++|||||+ ++.. .+-++. .+++.++.+.
T Consensus 357 tdtVTS~vF~~dd-~vVSgSDDrTvKvWdL-rNMRsplATIRtdS~~NRvavs~-------------------------- 408 (481)
T KOG0300|consen 357 TDTVTSVVFNTDD-RVVSGSDDRTVKVWDL-RNMRSPLATIRTDSPANRVAVSK-------------------------- 408 (481)
T ss_pred ccceeEEEEecCC-ceeecCCCceEEEeee-ccccCcceeeecCCccceeEeec--------------------------
Confidence 8999999998764 5889999999999999 5432 111111 1222222210
Q ss_pred CCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-cC---
Q 000707 690 TDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-RL--- 765 (1341)
Q Consensus 690 ~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-dg--- 765 (1341)
....+|.--.+..|++||++|+++.. +|-.+-.||...|+|.+| +.
T Consensus 409 --------------------------g~~iIAiPhDNRqvRlfDlnG~RlaR----lPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 409 --------------------------GHPIIAIPHDNRQVRLFDLNGNRLAR----LPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred --------------------------CCceEEeccCCceEEEEecCCCcccc----CCcccccccceeeeeeeccccCcc
Confidence 01234444566789999999988732 332222378899999999 22
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 000707 766 PHVVMGDRSGNIRWWDVTT 784 (1341)
Q Consensus 766 ~~LasGs~DgtI~lWDl~t 784 (1341)
.-|.+++-|..+.=|.+.+
T Consensus 459 cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 459 CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred cccccccccceeeeeEecc
Confidence 2477899999999998865
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.1e-19 Score=205.76 Aligned_cols=279 Identities=16% Similarity=0.213 Sum_probs=203.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc------EEEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCC
Q 000707 528 AVPLVALGTQSGAVDVVDVSANA------VTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~------~~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1341)
.+++|.+|+.||+|++|++.... ....++.|+..|+++....++ .+||+|.|. +|++|+...+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt----------TVK~W~~~~~ 105 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT----------TVKVWNAHKD 105 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc----------eEEEeecccC
Confidence 56789999999999999986432 366789999999999998887 788888765 8999999766
Q ss_pred ceeeeEEeccCCCCCeEEEEE-CCCCCEEEEEECCCcEEEEeccCCCc--eeeeccCceEEEEEcCCCCCCCCCCCCCcc
Q 000707 601 INRAFRVLQKPERAPIRALRA-SSSGRYLLILFRDAPVEVWAMTKNPI--MLRSLALPFTVLEWTLPTVPWPSQTGPSRQ 677 (1341)
Q Consensus 601 ~~~~l~~l~~~~~~~I~~i~~-SpdG~~Las~s~D~~I~vWDl~~t~~--~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~ 677 (1341)
..-++++++. |.+.|.|+++ -++...+|+|+-|+.|.|||+ .++. ++.++. .++.- +....++.
T Consensus 106 ~~~c~stir~-H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi-n~~~~~l~~s~n-~~t~~--sl~sG~k~-------- 172 (735)
T KOG0308|consen 106 NTFCMSTIRT-HKDYVKCLAYIAKNNELVASGGLDRKIFLWDI-NTGTATLVASFN-NVTVN--SLGSGPKD-------- 172 (735)
T ss_pred cchhHhhhhc-ccchheeeeecccCceeEEecCCCccEEEEEc-cCcchhhhhhcc-ccccc--cCCCCCcc--------
Confidence 3345666655 8999999999 788888999999999999999 5662 332221 11100 00000000
Q ss_pred cccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecC-CeeecccCCCCCCccccccc
Q 000707 678 SSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDG 756 (1341)
Q Consensus 678 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~-~~v~~~~~~~~~~~l~~~~~ 756 (1341)
...-+...+.+..++.|+.++-+++||... .++.+ +.||+.
T Consensus 173 -----------------------------siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---------LrGHTd 214 (735)
T KOG0308|consen 173 -----------------------------SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---------LRGHTD 214 (735)
T ss_pred -----------------------------ceeeeecCCcceEEEecCcccceEEeccccccceee---------eecccc
Confidence 000011123456788999999999999854 33322 337888
Q ss_pred eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 757 LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 757 ~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
.|.++-. ||..+++||+||+||+||+...+ +.++..|+..|+++..+|. - ..+.+|+.||.|..=|+++..
T Consensus 215 NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~s--f----~~vYsG~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 215 NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPS--F----THVYSGGRDGNIYRTDLRNPA 288 (735)
T ss_pred ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCC--c----ceEEecCCCCcEEecccCCch
Confidence 8988877 89999999999999999998877 5789999999999999988 3 679999999999999999864
Q ss_pred ccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 834 PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 834 ~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.. ++. .. ...+|..+.-+-. +++++ +++.|++|+-|....
T Consensus 289 ~~--tli-ck-~daPv~~l~~~~~----~~~~W--vtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 289 KS--TLI-CK-EDAPVLKLHLHEH----DNSVW--VTTTDSSIKRWKLEP 328 (735)
T ss_pred hh--eEe-ec-CCCchhhhhhccc----cCCce--eeeccccceecCCcc
Confidence 22 221 11 1245666655533 34433 778999999998765
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=3.6e-18 Score=193.29 Aligned_cols=247 Identities=17% Similarity=0.238 Sum_probs=186.3
Q ss_pred EEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCCcee---------------eeEEeccCCCCCe
Q 000707 553 ASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINR---------------AFRVLQKPERAPI 616 (1341)
Q Consensus 553 ~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~---------------~l~~l~~~~~~~I 616 (1341)
..+..|.-+|.++++++++ +.++++.+ ++|.=|++.+|... +++.-+..|...|
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~----------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~kei 205 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKD----------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEI 205 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCC----------cceeeeehhcCcccccccccchhhhhccCCCCccccccccee
Confidence 4455789999999999987 55555443 47888998887622 1111111366778
Q ss_pred EEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 617 RALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 617 ~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
.++++|+||+|||+|+.|..|.|||. .+.+.++.++ +.|.+++|-.
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~------------------------------ 254 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDC-DTLEHVKVFKGHRGAVSSLAFRK------------------------------ 254 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecC-cccchhhcccccccceeeeeeec------------------------------
Confidence 99999999999999999999999999 7887777655 2355555531
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG 771 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasG 771 (1341)
+ ...+.+++.|++|++|+++...... +|-||...|.+|.. .++.+-.|
T Consensus 255 ---------------------g-t~~lys~s~Drsvkvw~~~~~s~ve--------tlyGHqd~v~~IdaL~reR~vtVG 304 (479)
T KOG0299|consen 255 ---------------------G-TSELYSASADRSVKVWSIDQLSYVE--------TLYGHQDGVLGIDALSRERCVTVG 304 (479)
T ss_pred ---------------------C-ccceeeeecCCceEEEehhHhHHHH--------HHhCCccceeeechhcccceEEec
Confidence 1 1346789999999999997654322 12367888888877 45566667
Q ss_pred eCCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCC--CC---
Q 000707 772 DRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQF--PG--- 846 (1341)
Q Consensus 772 s~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~--~~--- 846 (1341)
+.|+++++|++....-..|.+|.+.|-+++|-.+ ..+++|++||+|.+|++.+.+++.... .+|. +.
T Consensus 305 grDrT~rlwKi~eesqlifrg~~~sidcv~~In~-------~HfvsGSdnG~IaLWs~~KKkplf~~~-~AHgv~~~~~~ 376 (479)
T KOG0299|consen 305 GRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-------EHFVSGSDNGSIALWSLLKKKPLFTSR-LAHGVIPELDP 376 (479)
T ss_pred cccceeEEEeccccceeeeeCCCCCeeeEEEecc-------cceeeccCCceEEEeeecccCceeEee-ccccccCCccc
Confidence 7999999999954444567999999999999887 679999999999999999888764322 3442 11
Q ss_pred ----CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 847 ----TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 847 ----~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
.||++++-.|. .+ ++|+||.+|+||+|.+..+
T Consensus 377 ~~~~~Witsla~i~~----sd--L~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPG----SD--LLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred cccccceeeeEeccc----Cc--eEEecCCCCceEEEEecCC
Confidence 28999999996 44 6899999999999999876
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.80 E-value=8.4e-18 Score=190.31 Aligned_cols=283 Identities=14% Similarity=0.127 Sum_probs=206.2
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEE----E------------EE--eecCC
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVT----A------------SF--SVHNG 560 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~----~------------~l--~~H~~ 560 (1341)
.|.-++++++++| +..++.+++.||+|.=|++.+|+-. . .. .+|..
T Consensus 140 ~H~~s~~~vals~----------------d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 140 KHQLSVTSVALSP----------------DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred cccCcceEEEeec----------------cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccc
Confidence 4788999999998 5788999999999999999988632 1 11 27889
Q ss_pred CeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 000707 561 TVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVW 640 (1341)
Q Consensus 561 ~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vW 640 (1341)
.|.+++.++|++++. +|+.++.|+|||.+|++ ++..+.+ |...|.+++|-..-..|.+++.|++|++|
T Consensus 204 eil~~avS~Dgkyla---------tgg~d~~v~Iw~~~t~e--hv~~~~g-hr~~V~~L~fr~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLA---------TGGRDRHVQIWDCDTLE--HVKVFKG-HRGAVSSLAFRKGTSELYSASADRSVKVW 271 (479)
T ss_pred eeEEEEEcCCCcEEE---------ecCCCceEEEecCcccc--hhhcccc-cccceeeeeeecCccceeeeecCCceEEE
Confidence 999999999999885 45667899999999988 5566666 89999999998877889999999999999
Q ss_pred eccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeE
Q 000707 641 AMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF 720 (1341)
Q Consensus 641 Dl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~l 720 (1341)
++ .....+.++-++-..+ ...+ .-..|.+
T Consensus 272 ~~-~~~s~vetlyGHqd~v-~~Id-------------------------------------------------aL~reR~ 300 (479)
T KOG0299|consen 272 SI-DQLSYVETLYGHQDGV-LGID-------------------------------------------------ALSRERC 300 (479)
T ss_pred eh-hHhHHHHHHhCCccce-eeec-------------------------------------------------hhcccce
Confidence 99 4554444433221110 0000 0113555
Q ss_pred EEE-ecCCcEEEEEecC-CeeecccCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc-eeee-cc---
Q 000707 721 AFA-LANGALGVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH-SSQF-ST--- 792 (1341)
Q Consensus 721 a~~-~~Dg~I~vwdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~LasGs~DgtI~lWDl~tg~-~~~l-~g--- 792 (1341)
++. +.|+++++|.+.. .++ .|.++.+.+-|++| +..++++|+.||+|.+|++.+.+ +.+. ..
T Consensus 301 vtVGgrDrT~rlwKi~eesql----------ifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 301 VTVGGRDRTVRLWKIPEESQL----------IFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred EEeccccceeEEEecccccee----------eeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 554 5999999999932 221 12356778999999 88999999999999999998876 3221 11
Q ss_pred --------CCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCC
Q 000707 793 --------HREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDP 864 (1341)
Q Consensus 793 --------H~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~ 864 (1341)
|..||++|+..|. . ..+|+++.+|.||+|-+..+-.-.+.+ ..-...+.|.++.|+++ |+.
T Consensus 371 ~~~~~~~~~~~Witsla~i~~--s----dL~asGS~~G~vrLW~i~~g~r~i~~l-~~ls~~GfVNsl~f~~s----gk~ 439 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVIPG--S----DLLASGSWSGCVRLWKIEDGLRAINLL-YSLSLVGFVNSLAFSNS----GKR 439 (479)
T ss_pred cCCccccccccceeeeEeccc--C----ceEEecCCCCceEEEEecCCcccccee-eecccccEEEEEEEccC----CCE
Confidence 2349999999998 2 689999999999999998873211111 22223478999999998 554
Q ss_pred eEEEEEECCCcEEEEEcc
Q 000707 865 LVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 865 ~~Las~s~DgtIrvWdv~ 882 (1341)
+++..+....+=-|-..
T Consensus 440 -ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 440 -IVAGIGKEHRLGRWWCL 456 (479)
T ss_pred -EEEecccccccceeeEe
Confidence 35555666655555443
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.80 E-value=6.4e-17 Score=185.99 Aligned_cols=266 Identities=18% Similarity=0.189 Sum_probs=181.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEE-EEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 530 PLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLV-SFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~ll-S~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
.++++++.||+|++||+.++++...+..|.. ++++.|+++++.+ ..+. .++.+++||+.+++ .++.+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~--~~~~~ 69 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGE--VIGTL 69 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEEC---------CCCeEEEEECCCCc--EEEec
Confidence 5788999999999999999999888887654 6789999998644 3222 24589999999887 44444
Q ss_pred ccCCCCCeEEEEECCCCCEEEEE-ECCCcEEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCC
Q 000707 609 QKPERAPIRALRASSSGRYLLIL-FRDAPVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDH 685 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~~Las~-s~D~~I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~ 685 (1341)
.. +. .+..+.|+|+|++++++ ..|+.|++||+ ++...+..+.. ...+++|+|+
T Consensus 70 ~~-~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~-~~~~~~~~~~~~~~~~~~~~~~d--------------------- 125 (300)
T TIGR03866 70 PS-GP-DPELFALHPNGKILYIANEDDNLVTVIDI-ETRKVLAEIPVGVEPEGMAVSPD--------------------- 125 (300)
T ss_pred cC-CC-CccEEEECCCCCEEEEEcCCCCeEEEEEC-CCCeEEeEeeCCCCcceEEECCC---------------------
Confidence 33 22 34678999999988655 56899999999 67766665542 2345666644
Q ss_pred CCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCC-cEEEEEecCCeeecccCCCCCCccccccceEEEEee-
Q 000707 686 KADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANG-ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 686 ~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg-~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
+..++++..++ .+..||.+...+... .+. ++ ...+++|
T Consensus 126 -------------------------------g~~l~~~~~~~~~~~~~d~~~~~~~~~---~~~----~~--~~~~~~~s 165 (300)
T TIGR03866 126 -------------------------------GKIVVNTSETTNMAHFIDTKTYEIVDN---VLV----DQ--RPRFAEFT 165 (300)
T ss_pred -------------------------------CCEEEEEecCCCeEEEEeCCCCeEEEE---EEc----CC--CccEEEEC
Confidence 34566666554 466678765433210 000 11 2344555
Q ss_pred -cCCEEE-EEeCCCcEEEEECCCCce-eeeccC-----CC--cEEEEEEccCCCCCCCCCEEEE-EECCCeEEEEECCCC
Q 000707 764 -RLPHVV-MGDRSGNIRWWDVTTGHS-SQFSTH-----RE--GIRRIKFSPVVPGDRSRGRIAV-LFHDNTFSVFDLDSQ 832 (1341)
Q Consensus 764 -dg~~La-sGs~DgtI~lWDl~tg~~-~~l~gH-----~~--~V~~V~fSP~~~gd~~~~~Las-~s~DgtI~IWDl~~~ 832 (1341)
+|++|+ ++..+|.|++||+.+++. +.+..+ .. ....++|+|+ + +++.+ .+.+++|.+||++++
T Consensus 166 ~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d--g----~~~~~~~~~~~~i~v~d~~~~ 239 (300)
T TIGR03866 166 ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD--G----KTAFVALGPANRVAVVDAKTY 239 (300)
T ss_pred CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC--C----CEEEEEcCCCCeEEEEECCCC
Confidence 888875 555799999999999873 444322 11 2356889998 4 45444 456778999999887
Q ss_pred CccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEE-ECCCcEEEEEccCCceec
Q 000707 833 DPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIA-GADSSFRLIEVNTEKKIG 888 (1341)
Q Consensus 833 ~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~-s~DgtIrvWdv~~~~~~~ 888 (1341)
+.+ ..+.. +..+.+++|+|+ ++ .|+++ +.+|+|++||+.+.+++.
T Consensus 240 ~~~-~~~~~----~~~~~~~~~~~~----g~--~l~~~~~~~~~i~v~d~~~~~~~~ 285 (300)
T TIGR03866 240 EVL-DYLLV----GQRVWQLAFTPD----EK--YLLTTNGVSNDVSVIDVAALKVIK 285 (300)
T ss_pred cEE-EEEEe----CCCcceEEECCC----CC--EEEEEcCCCCeEEEEECCCCcEEE
Confidence 633 22212 245889999998 55 45554 579999999999987754
No 120
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=187.38 Aligned_cols=257 Identities=14% Similarity=0.092 Sum_probs=205.5
Q ss_pred CCccccc-cccCCC-CCCCC---CCceEeCCC-CeEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEE
Q 000707 9 ADSWDCN-FMLPGP-PSRNN---FGSADLSPS-GLLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAV 81 (1341)
Q Consensus 9 ~~~~~~~-~~lpg~-~~~~~---~~a~~~s~~-gllA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v 81 (1341)
+|.|.|. ++-+++ +|..+ ..+++..|. ..+.+|. +..++++|..+.|.+.+|+||+. .|+.|
T Consensus 199 ~d~~~~~~q~ash~gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-----------ki~~v 267 (506)
T KOG0289|consen 199 TDELSCLLQVASHTGLHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTK-----------KITSV 267 (506)
T ss_pred HHHHHHHHhcCCCcceeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcce-----------EEEEE
Confidence 4558884 333444 33332 357788876 4777775 45899999999999999999998 99999
Q ss_pred EEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeE
Q 000707 82 KWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1341)
Q Consensus 82 ~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1341)
.|+|+. ..+++++.|-.|+||.+..-..... ...|.. +|+++.-.|.+ ++|++++.|++.
T Consensus 268 ~~~~~~--------------~~v~~aSad~~i~vws~~~~s~~~~--~~~h~~-~V~~ls~h~tg---eYllsAs~d~~w 327 (506)
T KOG0289|consen 268 KFHKDL--------------DTVITASADEIIRVWSVPLSSEPTS--SRPHEE-PVTGLSLHPTG---EYLLSASNDGTW 327 (506)
T ss_pred Eeccch--------------hheeecCCcceEEeeccccccCccc--cccccc-cceeeeeccCC---cEEEEecCCceE
Confidence 999874 5689999999999999876654444 356778 99999999987 899999999999
Q ss_pred EEEECCCCeEEEEEeCC--CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 162 SLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 162 ~lWd~~tg~~i~~~~~~--~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
...|.++|.++.+.... .-.+++.+|+| |+-.|.++..||.+++||+..+.. .-+
T Consensus 328 ~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~----~a~------------------ 384 (506)
T KOG0289|consen 328 AFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN----VAK------------------ 384 (506)
T ss_pred EEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc----ccc------------------
Confidence 99999999988776542 23588999999 999999999999999999855311 011
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCC
Q 000707 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1341)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1341)
..+|...|..++|+-+|-+++++..|++|++|||..-+.+.++.++... .+.++.+...|.+|+.++.|=
T Consensus 385 ---------Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt~L~~~g~~l 454 (506)
T KOG0289|consen 385 ---------FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGTYLGIAGSDL 454 (506)
T ss_pred ---------CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCCeEEeeccee
Confidence 1224445888999999999999999999999999988888888887543 677888999999999998877
Q ss_pred cEEEEeccCC
Q 000707 320 KLSIWRRKEG 329 (1341)
Q Consensus 320 tI~lW~~~~g 329 (1341)
.|.+.+.++.
T Consensus 455 ~Vy~~~k~~k 464 (506)
T KOG0289|consen 455 QVYICKKKTK 464 (506)
T ss_pred EEEEEecccc
Confidence 7766665544
No 121
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.6e-18 Score=194.74 Aligned_cols=289 Identities=17% Similarity=0.269 Sum_probs=199.1
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC--cE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS--RL 573 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~--~l 573 (1341)
.+.||++.|.+|.+.| .|.+||+|+.||+||||.+.||.|++....- +.|++|+|.|.+ .+
T Consensus 395 vyrGHtg~Vr~iSvdp----------------~G~wlasGsdDGtvriWEi~TgRcvr~~~~d-~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDP----------------SGEWLASGSDDGTVRIWEIATGRCVRTVQFD-SEIRSVAWNPLSDLCV 457 (733)
T ss_pred eEeccCCeEEEEEecC----------------CcceeeecCCCCcEEEEEeecceEEEEEeec-ceeEEEEecCCCCcee
Confidence 4568999999999998 5899999999999999999999999887643 589999999876 45
Q ss_pred EEEecCCc----ccccC-------------------cccCeEEEEEccC---Cc-eeeeEEeccCCCCCeEEEEECCCCC
Q 000707 574 VSFSYSQV----NEKSG-------------------GYINRLVVTCLRS---GI-NRAFRVLQKPERAPIRALRASSSGR 626 (1341)
Q Consensus 574 lS~s~d~~----~~~sg-------------------~~~~~i~lwD~~t---G~-~~~l~~l~~~~~~~I~~i~~SpdG~ 626 (1341)
++++.... +...| .-+..+..|.-.. ++ ..++.. .|..+|+.+.|+.+|+
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I---~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI---KHPKSIRQVTWHRKGD 534 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE---ecCCccceeeeecCCc
Confidence 55554321 00011 0122344564321 11 011221 2677999999999999
Q ss_pred EEEEEECC---CcEEEEeccCCCceeeec---cCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccC
Q 000707 627 YLLILFRD---APVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIAS 700 (1341)
Q Consensus 627 ~Las~s~D---~~I~vWDl~~t~~~l~~l---~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~ 700 (1341)
||++...+ ..|-|.++. ......-| ++.+..+.|+|.
T Consensus 535 YlatV~~~~~~~~VliHQLS-K~~sQ~PF~kskG~vq~v~FHPs------------------------------------ 577 (733)
T KOG0650|consen 535 YLATVMPDSGNKSVLIHQLS-KRKSQSPFRKSKGLVQRVKFHPS------------------------------------ 577 (733)
T ss_pred eEEEeccCCCcceEEEEecc-cccccCchhhcCCceeEEEecCC------------------------------------
Confidence 99988654 467788773 22211111 123445556543
Q ss_pred CCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEE
Q 000707 701 SSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIR 778 (1341)
Q Consensus 701 ~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~ 778 (1341)
....+......|++||+..+.+. +..++ ....|..|+. .|+.|+.|+.|+.+.
T Consensus 578 -----------------~p~lfVaTq~~vRiYdL~kqelv--KkL~t------g~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 578 -----------------KPYLFVATQRSVRIYDLSKQELV--KKLLT------GSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred -----------------CceEEEEeccceEEEehhHHHHH--HHHhc------CCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 11234445678999999554331 11111 1246788887 789999999999999
Q ss_pred EEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEE------ECCCCCcccc--ccccCCCC--C
Q 000707 779 WWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF------DLDSQDPLAN--SLLQPQFP--G 846 (1341)
Q Consensus 779 lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IW------Dl~~~~~l~~--~l~~gh~~--~ 846 (1341)
++|+.-.. .+++.-|+..|++|+|++.. -.+|+++.||++.|+ |+...- +.. ..+.||.. .
T Consensus 633 WfDldlsskPyk~lr~H~~avr~Va~H~ry------PLfas~sdDgtv~Vfhg~VY~Dl~qnp-liVPlK~L~gH~~~~~ 705 (733)
T KOG0650|consen 633 WFDLDLSSKPYKTLRLHEKAVRSVAFHKRY------PLFASGSDDGTVIVFHGMVYNDLLQNP-LIVPLKRLRGHEKTND 705 (733)
T ss_pred EEEcccCcchhHHhhhhhhhhhhhhhcccc------ceeeeecCCCcEEEEeeeeehhhhcCC-ceEeeeeccCceeecc
Confidence 99997653 56788999999999999984 469999999999998 432221 211 22367752 2
Q ss_pred CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEE
Q 000707 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLI 879 (1341)
Q Consensus 847 ~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvW 879 (1341)
.-|+++.|+|. .+ +|.++++||+||+|
T Consensus 706 ~gVLd~~wHP~-----qp-WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 706 LGVLDTIWHPR-----QP-WLFSAGADGTIRLF 732 (733)
T ss_pred cceEeecccCC-----Cc-eEEecCCCceEEee
Confidence 44899999997 77 68999999999999
No 122
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.79 E-value=3.2e-18 Score=194.12 Aligned_cols=248 Identities=15% Similarity=0.158 Sum_probs=186.5
Q ss_pred CCCCCCceEeCCCC--eEEEEc-CCeEEEEeCCCc----------ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCc
Q 000707 23 SRNNFGSADLSPSG--LLAFAS-GSSISILDSRSL----------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs-~~~V~v~d~~~~----------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1341)
|...|+.+.+=|+. +||+++ ++.|.|||...- ..-..|.||+. .=+++.|++..
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-----------eg~glsWn~~~-- 189 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-----------EGYGLSWNRQQ-- 189 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-----------ccccccccccc--
Confidence 44567888999987 777764 578999996431 11237889997 56689999874
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE-----EEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE
Q 000707 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV-----VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1341)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~-----~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1341)
--+|+||+.|++|++||+..... .....+.+|+. .|.+++|.+-.. .++++++.|+.+.||
T Consensus 190 -----------~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~-~VeDV~~h~~h~--~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 190 -----------EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHED-VVEDVAWHPLHE--DLFGSVGDDGKLMIW 255 (422)
T ss_pred -----------ceeEeeccCCCcEEEEeccccccCCccccceEEeecCCc-ceehhhccccch--hhheeecCCCeEEEE
Confidence 34799999999999999954322 12222578988 999999999763 799999999999999
Q ss_pred ECCC--CeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhcccc
Q 000707 165 NTTS--ASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGA 242 (1341)
Q Consensus 165 d~~t--g~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s 242 (1341)
|+++ -++.....+|...|+|++|+||++..||++|.|++|.+||++.-. +. +..+
T Consensus 256 D~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~------~~---------lh~~-------- 312 (422)
T KOG0264|consen 256 DTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN------KP---------LHTF-------- 312 (422)
T ss_pred EcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc------cC---------ceec--------
Confidence 9994 444555677888999999999999999999999999999975410 11 1111
Q ss_pred CCCCCCCCcCccceEEEEEccCCCceEE-EEcCCeEEEEEcCC-Ccee-----------EEEecCCCccceEEEEEcCCC
Q 000707 243 ASLSPASGLFPLYMVKFTFSPHWRHIIF-VTFPRELVVFDLQY-ETPL-----------FSAALPRGCAKFLDVLADPNN 309 (1341)
Q Consensus 243 ~~~~p~~~~~~~~v~~~afSpdg~~l~~-~~~d~~I~iwDl~t-~~~l-----------~~~~l~~~~~~~~~v~~~pdg 309 (1341)
..+...|.++.|||+...++. .+.||.+.|||+.. |+.. -.+...+|...+.++.++|+.
T Consensus 313 -------e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 313 -------EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred -------cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCC
Confidence 234456899999999876655 45899999999973 2221 012233455778888889987
Q ss_pred C-EEEEEecCCcEEEEecc
Q 000707 310 D-LLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 310 ~-~L~s~~~DgtI~lW~~~ 327 (1341)
. .|+|+.+|+.+.||+..
T Consensus 386 PW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CeEEEEecCCceEEEeecc
Confidence 7 67789999999999976
No 123
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=2.6e-17 Score=178.60 Aligned_cols=249 Identities=17% Similarity=0.208 Sum_probs=187.9
Q ss_pred cccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCc
Q 000707 12 WDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1341)
Q Consensus 12 ~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1341)
|.-...+.-+.|.....|++.+ | .+|+|+ +.+|.|+|.+....+..|-.|.+ .||+++|.|...
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-----------sitaL~F~~~~S- 96 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-----------SITALKFYPPLS- 96 (362)
T ss_pred eeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceecccc-----------ceEEEEecCCcc-
Confidence 4333355566788888999995 5 788875 67999999999999999999998 899999998742
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC
Q 000707 90 CDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1341)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1341)
-..|.||+.||.|.+||+....++.++ .+|.+ .|++|+..|.+ ++-++.++|+.+++||+.+|
T Consensus 97 -----------~shLlS~sdDG~i~iw~~~~W~~~~sl--K~H~~-~Vt~lsiHPS~---KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 97 -----------KSHLLSGSDDGHIIIWRVGSWELLKSL--KAHKG-QVTDLSIHPSG---KLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred -----------hhheeeecCCCcEEEEEcCCeEEeeee--ccccc-ccceeEecCCC---ceEEEEcCCceeeeehhhcC
Confidence 237999999999999999988888885 78988 79999999987 88899999999999999999
Q ss_pred eEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCC
Q 000707 170 SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPAS 249 (1341)
Q Consensus 170 ~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~ 249 (1341)
+.-..... ...-+.+.|+| .+.++++.+.+ .|-+|.... ..+.+.+.
T Consensus 160 r~a~v~~L-~~~at~v~w~~-~Gd~F~v~~~~-~i~i~q~d~--------------------A~v~~~i~---------- 206 (362)
T KOG0294|consen 160 RVAFVLNL-KNKATLVSWSP-QGDHFVVSGRN-KIDIYQLDN--------------------ASVFREIE---------- 206 (362)
T ss_pred ccceeecc-CCcceeeEEcC-CCCEEEEEecc-EEEEEeccc--------------------HhHhhhhh----------
Confidence 86444443 22334589999 88888888764 344443211 11111110
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEE--cCCCCEEEEEecCCcEEEEecc
Q 000707 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLA--DPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 250 ~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~--~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
.+..+..+.|- ++..+++++.|+.|.+||..+..+...+..| ...+-++++ .|++.+|++++.||.|++||++
T Consensus 207 --~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 207 --NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred --ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc--hhheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 12234444555 4568889999999999999998887776544 344555553 5889999999999999999987
Q ss_pred CC
Q 000707 328 EG 329 (1341)
Q Consensus 328 ~g 329 (1341)
..
T Consensus 282 ~~ 283 (362)
T KOG0294|consen 282 ME 283 (362)
T ss_pred cc
Confidence 43
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7e-18 Score=191.36 Aligned_cols=225 Identities=16% Similarity=0.277 Sum_probs=173.0
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecC
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
.+++|.+|+-+| .|.+|+.|+..|.|.+|.+.+|.++..+.+|-..|++|.|+.|+..+-
T Consensus 80 ~Pg~v~al~s~n----------------~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~ii---- 139 (476)
T KOG0646|consen 80 LPGPVHALASSN----------------LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHII---- 139 (476)
T ss_pred cccceeeeecCC----------------CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEE----
Confidence 478899999877 588999999999999999999999999999999999999999985442
Q ss_pred CcccccCcccCeEEEEEc-------cCCceeeeEEeccCCCCCeEEEEECCCC--CEEEEEECCCcEEEEeccCCCceee
Q 000707 580 QVNEKSGGYINRLVVTCL-------RSGINRAFRVLQKPERAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIMLR 650 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~-------~tG~~~~l~~l~~~~~~~I~~i~~SpdG--~~Las~s~D~~I~vWDl~~t~~~l~ 650 (1341)
+|+.|+.|.+|++ +++..++++.+.. |.-+|+.+...+.| .+|+++|.|+++|+||+ ..+.++.
T Consensus 140 -----TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl-S~g~LLl 212 (476)
T KOG0646|consen 140 -----TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-HTLSITDLQIGSGGTNARLYTASEDRTIKLWDL-SLGVLLL 212 (476)
T ss_pred -----ecCCCccEEEEEEEeecccccCCCccceeeecc-CcceeEEEEecCCCccceEEEecCCceEEEEEe-ccceeeE
Confidence 3444668999987 2344567777665 88899999988754 58999999999999999 6888776
Q ss_pred eccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCc
Q 000707 651 SLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1341)
Q Consensus 651 ~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~ 728 (1341)
++.- ++.+++.+| ....+..|..+|.
T Consensus 213 ti~fp~si~av~lDp----------------------------------------------------ae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 213 TITFPSSIKAVALDP----------------------------------------------------AERVVYIGTEEGK 240 (476)
T ss_pred EEecCCcceeEEEcc----------------------------------------------------cccEEEecCCcce
Confidence 5442 234444443 2344567778888
Q ss_pred EEEEEecCC---ee------ecc-cCCCCCCccccccc--eEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccC
Q 000707 729 LGVFEVHGR---RI------RDF-RPKWPSSSFISSDG--LITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTH 793 (1341)
Q Consensus 729 I~vwdv~~~---~v------~~~-~~~~~~~~l~~~~~--~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH 793 (1341)
|.+.++.+- +- ++. ..++ ..|+||.+ .|+|++. ||..|++|+.||+|.|||+.+++ ++++..-
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~--~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQI--NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred EEeeehhcCCccccccccccccccccee--eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 888776321 11 110 0111 23678888 8999888 99999999999999999999988 5777767
Q ss_pred CCcEEEEEEccC
Q 000707 794 REGIRRIKFSPV 805 (1341)
Q Consensus 794 ~~~V~~V~fSP~ 805 (1341)
+++|+-+.+.|-
T Consensus 319 kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 319 KGPVTNLQINPL 330 (476)
T ss_pred ccccceeEeecc
Confidence 899999999665
No 125
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.6e-18 Score=177.41 Aligned_cols=241 Identities=14% Similarity=0.197 Sum_probs=175.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---cEEEEEeecCCCeEEEEEcC--CC-cEEEEecCCcccccCcccCeEEEEEccCCc
Q 000707 528 AVPLVALGTQSGAVDVVDVSAN---AVTASFSVHNGTVRGLRWLG--NS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg---~~~~~l~~H~~~V~~l~fs~--d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1341)
+|++||+++.|++|+|+.+..+ +++.+|.||+++|.-++|.. -| -++|+++ |+.|.||.-.+|+
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY----------DgkVIiWke~~g~ 91 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSY----------DGKVIIWKEENGR 91 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeec----------CceEEEEecCCCc
Confidence 7999999999999999999754 46889999999999999964 34 4455554 5699999998886
Q ss_pred eeeeEEeccCCCCCeEEEEECCC--CCEEEEEECCCcEEEEeccCCCc-eeee----ccCceEEEEEcCCCCCCCCCCCC
Q 000707 602 NRAFRVLQKPERAPIRALRASSS--GRYLLILFRDAPVEVWAMTKNPI-MLRS----LALPFTVLEWTLPTVPWPSQTGP 674 (1341)
Q Consensus 602 ~~~l~~l~~~~~~~I~~i~~Spd--G~~Las~s~D~~I~vWDl~~t~~-~l~~----l~~~v~~l~wsp~~~~~~~~~~~ 674 (1341)
-....... .|...|++|+|-|. |-.||.++.||.|.|.+....+. .... ....++++.|.|...+-.+.
T Consensus 92 w~k~~e~~-~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~--- 167 (299)
T KOG1332|consen 92 WTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV--- 167 (299)
T ss_pred hhhhhhhh-hhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc---
Confidence 43333333 38889999999985 67899999999999998832211 1111 11246899999875442210
Q ss_pred CcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccc
Q 000707 675 SRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISS 754 (1341)
Q Consensus 675 ~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~ 754 (1341)
..........|++++.|+.|+||..+...-.. ...|.+|
T Consensus 168 -----------------------------------~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~------e~~l~~H 206 (299)
T KOG1332|consen 168 -----------------------------------DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL------ERTLEGH 206 (299)
T ss_pred -----------------------------------ccCcccccceeeccCCccceeeeecCCcchhh------hhhhhhc
Confidence 00000113568999999999999986532110 1125589
Q ss_pred cceEEEEee------cCCEEEEEeCCCcEEEEECCCC--c--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeE
Q 000707 755 DGLITAMAY------RLPHVVMGDRSGNIRWWDVTTG--H--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTF 824 (1341)
Q Consensus 755 ~~~v~sla~------dg~~LasGs~DgtI~lWDl~tg--~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI 824 (1341)
.+.|..+|| ...+||+++.||++.||-.... . ..-+......+.++.||+. | ..||+++.|+.|
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~s--G----n~LaVs~GdNkv 280 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLS--G----NILAVSGGDNKV 280 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecc--c----cEEEEecCCcEE
Confidence 999999999 2357999999999999987632 1 2223445688999999998 5 689999999999
Q ss_pred EEEEC
Q 000707 825 SVFDL 829 (1341)
Q Consensus 825 ~IWDl 829 (1341)
.+|.-
T Consensus 281 tlwke 285 (299)
T KOG1332|consen 281 TLWKE 285 (299)
T ss_pred EEEEe
Confidence 99964
No 126
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=7.7e-17 Score=175.07 Aligned_cols=263 Identities=16% Similarity=0.232 Sum_probs=188.9
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCc
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~ 581 (1341)
..|++|.|+| .+..|+++++||++++||+.+..+...+ .|..++.+.+|.++...++
T Consensus 14 d~IS~v~f~~----------------~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~------ 70 (323)
T KOG1036|consen 14 DGISSVKFSP----------------SSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVT------ 70 (323)
T ss_pred hceeeEEEcC----------------cCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEE------
Confidence 4688999997 3556667789999999999877544443 5889999999999877764
Q ss_pred ccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc--CceEEE
Q 000707 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPFTVL 659 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--~~v~~l 659 (1341)
|+.|+.|++.|+.+|....+ +.|..+|++|.+++-...+++|++|++|++||. +.....-.+. +.|.++
T Consensus 71 ----G~~dg~vr~~Dln~~~~~~i----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~-R~~~~~~~~d~~kkVy~~ 141 (323)
T KOG1036|consen 71 ----GGLDGQVRRYDLNTGNEDQI----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDP-RNKVVVGTFDQGKKVYCM 141 (323)
T ss_pred ----eccCceEEEEEecCCcceee----ccCCCceEEEEeeccCCeEEEcccCccEEEEec-cccccccccccCceEEEE
Confidence 55677999999999873322 348899999999998888999999999999999 5532222221 112111
Q ss_pred EEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCee
Q 000707 660 EWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRI 739 (1341)
Q Consensus 660 ~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v 739 (1341)
+-.++.|+++..|..+.+||+.....
T Consensus 142 ------------------------------------------------------~v~g~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 142 ------------------------------------------------------DVSGNRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred ------------------------------------------------------eccCCEEEEeecCceEEEEEcccccc
Confidence 11257789999999999999965432
Q ss_pred ecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-----eeeeccCC---------CcEEEEEEc
Q 000707 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-----SSQFSTHR---------EGIRRIKFS 803 (1341)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-----~~~l~gH~---------~~V~~V~fS 803 (1341)
.. .+.+ .+| .-.+.||+. .+.-.|+++-||.|.+=.+...+ -..|..|+ -+|.+|+|+
T Consensus 168 ~~--q~re-S~l---kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh 241 (323)
T KOG1036|consen 168 PF--QRRE-SSL---KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH 241 (323)
T ss_pred hh--hhcc-ccc---eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEec
Confidence 10 0000 111 124566666 66778999999999886665542 23467775 389999999
Q ss_pred cCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEEC
Q 000707 804 PVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1341)
Q Consensus 804 P~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~ 872 (1341)
|- . +.+|+|+.||-|.+||+.+.+.+. .+ |.-...|-+++|+-+ |. .||.|+.
T Consensus 242 p~--~----~tfaTgGsDG~V~~Wd~~~rKrl~-q~---~~~~~SI~slsfs~d----G~--~LAia~s 294 (323)
T KOG1036|consen 242 PI--H----GTFATGGSDGIVNIWDLFNRKRLK-QL---AKYETSISSLSFSMD----GS--LLAIASS 294 (323)
T ss_pred cc--c----ceEEecCCCceEEEccCcchhhhh-hc---cCCCCceEEEEeccC----CC--eEEEEec
Confidence 98 3 689999999999999999887542 22 222356999999987 55 5666653
No 127
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.9e-17 Score=185.68 Aligned_cols=285 Identities=12% Similarity=0.180 Sum_probs=210.3
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC--cEEEEEeecCCCeEEEEEcCCCc-EEEEec
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN--AVTASFSVHNGTVRGLRWLGNSR-LVSFSY 578 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg--~~~~~l~~H~~~V~~l~fs~d~~-llS~s~ 578 (1341)
++|++|.|+| ..++|.+++.||+++||-+.-. ..+..+.--..+|.+.+|.|+|. .+.+|
T Consensus 214 ~~I~sv~FHp----------------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s- 276 (514)
T KOG2055|consen 214 GGITSVQFHP----------------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTS- 276 (514)
T ss_pred CCceEEEecC----------------CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEec-
Confidence 5799999999 5789999999999999998633 34555555578999999999985 44332
Q ss_pred CCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc--Cce
Q 000707 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--LPF 656 (1341)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--~~v 656 (1341)
+.+..+..||+.+++...+....+.++..++...+||++++||+.+..|-|.|-.. +++..+.+++ +.+
T Consensus 277 --------~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha-kT~eli~s~KieG~v 347 (514)
T KOG2055|consen 277 --------GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA-KTKELITSFKIEGVV 347 (514)
T ss_pred --------ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh-hhhhhhheeeeccEE
Confidence 23457899999998865555555545567889999999999999999999999998 7999888776 446
Q ss_pred EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecC
Q 000707 657 TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG 736 (1341)
Q Consensus 657 ~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~ 736 (1341)
..+.|+.+ ++.+...+.+|.|++||++.
T Consensus 348 ~~~~fsSd----------------------------------------------------sk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 348 SDFTFSSD----------------------------------------------------SKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred eeEEEecC----------------------------------------------------CcEEEEEcCCceEEEEecCC
Confidence 67778622 35667778899999999987
Q ss_pred CeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCC----c---eeeeccCCCcEEEEEEccCCCCC
Q 000707 737 RRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTG----H---SSQFSTHREGIRRIKFSPVVPGD 809 (1341)
Q Consensus 737 ~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg----~---~~~l~gH~~~V~~V~fSP~~~gd 809 (1341)
+.+.. +|.... +--+.-.|++.+|++||+|+..|.|.|||.++- . +.++..-+..|.+++|+|+ .
T Consensus 376 ~~~~~---rf~D~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d--~- 447 (514)
T KOG2055|consen 376 NSCLH---RFVDDG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD--A- 447 (514)
T ss_pred cceEE---EEeecC--ccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc--h-
Confidence 65521 121110 111334566679999999999999999997652 1 3345556788999999999 3
Q ss_pred CCCCEEEEEE--CCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 810 RSRGRIAVLF--HDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 810 ~~~~~Las~s--~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+.||.+| .+..+|+--+.+-. +.......-..-+.|++++|+|. +. +||.|..+|.+.+|.+.
T Consensus 448 ---qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~----sG--~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 448 ---QILAIASRVKKNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPN----SG--YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ---hhhhhhhhccccceEEEecccee-eeccCCCCCCcccceEEEEecCC----Cc--eEEeecCCCceeeEeec
Confidence 6677665 57788887776543 21111111111257999999996 44 78999999999999875
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=6e-18 Score=186.08 Aligned_cols=237 Identities=12% Similarity=0.130 Sum_probs=188.3
Q ss_pred CCCCCCceEeCCCC--eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCC
Q 000707 23 SRNNFGSADLSPSG--LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1341)
|++.|.|++=+|.. .+|+|+ |+.|.|||..+..++.+|..|.+ .|..+.+...
T Consensus 65 HrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-----------~V~Gi~v~~~------------- 120 (433)
T KOG0268|consen 65 HRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-----------LVRGICVTQT------------- 120 (433)
T ss_pred cccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccC-----------ceeeEEeccc-------------
Confidence 89999999999987 688875 78999999999999999999999 9999998853
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCC
Q 000707 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASP 179 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~ 179 (1341)
.+.+++.|.+|+.|-+.- ..++++ .+ ++.+.++.-...+ ...|+++. .|.|||...-.++..+.-+.
T Consensus 121 ---~~~tvgdDKtvK~wk~~~-~p~~ti--lg--~s~~~gIdh~~~~---~~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 121 ---SFFTVGDDKTVKQWKIDG-PPLHTI--LG--KSVYLGIDHHRKN---SVFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred ---ceEEecCCcceeeeeccC-Ccceee--ec--ccccccccccccc---ccccccCc--eeeecccccCCccceeecCC
Confidence 478999999999999754 355553 22 2256666554433 57788874 58899999888988888778
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 180 EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 180 ~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
+.|.++.|+|-.-..|++++.|+.|.++|.....+ .+++.+. .....+
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----l~KVi~~----------------------------mRTN~I 235 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASP----LKKVILT----------------------------MRTNTI 235 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCc----cceeeee----------------------------ccccce
Confidence 99999999998888899999999999999865433 3433221 012356
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCC-ceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYE-TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~-~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
+|+|..-+.+++..|..+..+|...- +++.+.. .+.+.+++|.++|-|+-+++||-|.+|||+....+.
T Consensus 236 swnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~--dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 236 CWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK--DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ecCccccceeeccccccceehhhhhhcccchhhc--ccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 99998888888889999999999854 3444433 345788999999999999999999999999987654
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=2.9e-17 Score=191.54 Aligned_cols=307 Identities=14% Similarity=0.162 Sum_probs=193.2
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcE------EEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCC
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAV------TASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~------~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1341)
..++||.+.+||.|.++|...... .+.+..|..+|..+.|.|.. +||+++.| .++++||++++
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGD----------sT~r~Wdvk~s 132 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGD----------STIRPWDVKTS 132 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCC----------ceeeeeeeccc
Confidence 578999999999999999865432 35667899999999999843 67776655 49999999988
Q ss_pred ceeeeEEeccCCCCCeEEEEECCCC-CEEEEEECCCcEEEEeccCCCceeeecc---CceEEEEEcCCCCCCCCCCCCCc
Q 000707 601 INRAFRVLQKPERAPIRALRASSSG-RYLLILFRDAPVEVWAMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSR 676 (1341)
Q Consensus 601 ~~~~l~~l~~~~~~~I~~i~~SpdG-~~Las~s~D~~I~vWDl~~t~~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k 676 (1341)
+.+-.+...| |...|.+++|.|+. ..|++|++|+.|.|||++.++ ...+. ..++... .+.+.+.+ +.|
T Consensus 133 ~l~G~~~~~G-H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~--~d~~e~~~~~~~~~~---n~~ptpsk--p~~ 204 (720)
T KOG0321|consen 133 RLVGGRLNLG-HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG--VDALEEFDNRIYGRH---NTAPTPSK--PLK 204 (720)
T ss_pred eeecceeecc-cccccchhhhccCCCcceeeccCCCcEEEEEEeccc--hhhHHHHhhhhhccc---cCCCCCCc--hhh
Confidence 7544444555 88999999999975 467899999999999994222 11111 1111100 00011100 111
Q ss_pred ccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEec-CCcEEEEEecCCee-ecccCCCCCCccccc
Q 000707 677 QSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALA-NGALGVFEVHGRRI-RDFRPKWPSSSFISS 754 (1341)
Q Consensus 677 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg~I~vwdv~~~~v-~~~~~~~~~~~l~~~ 754 (1341)
+..+..+... ..-... +...+. .+..+||+++. |+.|+|||+..+.. ....+ .+...+..|
T Consensus 205 kr~~k~kA~s----~ti~ss----------vTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep-~~~~~~~t~ 267 (720)
T KOG0321|consen 205 KRIRKWKAAS----NTIFSS----------VTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEP-RGSDKYPTH 267 (720)
T ss_pred cccccccccc----Cceeee----------eEEEEE--eccceeeeccCCCcceEEEeecccccccccCC-CcccCccCc
Confidence 1000001000 000000 000111 23456888776 99999999964322 00000 000011111
Q ss_pred ---cceEEEEeec--CCEEEEEeCCCcEEEEECCCCce---eeeccCCC---cEEEEEEccCCCCCCCCCEEEEEECCCe
Q 000707 755 ---DGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGHS---SQFSTHRE---GIRRIKFSPVVPGDRSRGRIAVLFHDNT 823 (1341)
Q Consensus 755 ---~~~v~sla~d--g~~LasGs~DgtI~lWDl~tg~~---~~l~gH~~---~V~~V~fSP~~~gd~~~~~Las~s~Dgt 823 (1341)
..-++++..| |.+|.+-+.|++|++||+.+-.. ..+.+|.. .|.++ .||+ + .+|++++.|..
T Consensus 268 skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~-lSpd--~----~~l~SgSsd~~ 340 (720)
T KOG0321|consen 268 SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSE-LSPD--D----CSLLSGSSDEQ 340 (720)
T ss_pred ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeee-cCCC--C----ceEeccCCCcc
Confidence 1125666664 68888878899999999987442 23444432 23332 5787 4 78999999999
Q ss_pred EEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 824 FSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 824 I~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
..||.+.+.+.-. .++.||. ..|+.++|+|. ...+ +++++.|.++++|++..+
T Consensus 341 ayiw~vs~~e~~~-~~l~Ght--~eVt~V~w~pS---~~t~--v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 341 AYIWVVSSPEAPP-ALLLGHT--REVTTVRWLPS---ATTP--VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeecCccCCh-hhhhCcc--eEEEEEeeccc---cCCC--ceeeccCcceEEEeccCc
Confidence 9999999987432 3447887 57999999986 1233 468899999999999654
No 130
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=2.4e-17 Score=192.53 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=176.4
Q ss_pred cCCCceEEEEcCCeEEEEEcCCCce------eEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeee
Q 000707 263 PHWRHIIFVTFPRELVVFDLQYETP------LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 263 pdg~~l~~~~~d~~I~iwDl~t~~~------l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
|.++.+.+++.|+.|++|+...-.. +.. ++.|..-+.+++.|-+|+.|+|+|.|-+|++|+...+. ++|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~as--me~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIAS--MEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---TFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhh--hhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc---chh
Confidence 4456699999999999999874322 222 33445566677888999999999999999999986542 222
Q ss_pred cccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEE
Q 000707 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1341)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lW 416 (1341)
- ..+++ ..--|..++. ...+...+||++-|++|.+|
T Consensus 110 ~-----stir~--H~DYVkcla~-------------------------------------~ak~~~lvaSgGLD~~IflW 145 (735)
T KOG0308|consen 110 M-----STIRT--HKDYVKCLAY-------------------------------------IAKNNELVASGGLDRKIFLW 145 (735)
T ss_pred H-----hhhhc--ccchheeeee-------------------------------------cccCceeEEecCCCccEEEE
Confidence 0 00110 0001111111 01123489999999999999
Q ss_pred EccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeee
Q 000707 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1341)
Q Consensus 417 dl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1341)
|+.++-.... .+|.... . . ..
T Consensus 146 Din~~~~~l~---------------~s~n~~t-~------------------------------~-------------sl 166 (735)
T KOG0308|consen 146 DINTGTATLV---------------ASFNNVT-V------------------------------N-------------SL 166 (735)
T ss_pred EccCcchhhh---------------hhccccc-c------------------------------c-------------cC
Confidence 9987632100 0010000 0 0 00
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC-cEEE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS-RLVS 575 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~-~llS 575 (1341)
-.|+..+|+++++.+ .|..+++|+..+.+|+||-.++..+..|.||+..|+.|-.++|| +++|
T Consensus 167 ~sG~k~siYSLA~N~----------------t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQ----------------TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred CCCCccceeeeecCC----------------cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEee
Confidence 125678999999987 47899999999999999999999999999999999999999988 6776
Q ss_pred EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP 646 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~ 646 (1341)
+|. |++|+|||+...+ ++.++.- |...|.++..+|+=+++.+|++|+.|..=|+ ++.
T Consensus 231 ~sS----------DgtIrlWdLgqQr--Cl~T~~v-H~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl-~n~ 287 (735)
T KOG0308|consen 231 ASS----------DGTIRLWDLGQQR--CLATYIV-HKEGVWALQSSPSFTHVYSGGRDGNIYRTDL-RNP 287 (735)
T ss_pred cCC----------CceEEeeeccccc--eeeeEEe-ccCceEEEeeCCCcceEEecCCCCcEEeccc-CCc
Confidence 554 4599999996555 6766665 7777999999999999999999999998888 553
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.76 E-value=1.6e-16 Score=171.62 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=186.4
Q ss_pred cccCCCCCCCCCCceEeCCC--CeEEEEc-CCeEEEEeCCC-ccee-EeecCCCCCCCCCCCCCCCcEEEEEEccCCCcc
Q 000707 16 FMLPGPPSRNNFGSADLSPS--GLLAFAS-GSSISILDSRS-LQLI-STIPIPPPTSAGSVASLSPFVTAVKWIPITLRC 90 (1341)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~--gllA~gs-~~~V~v~d~~~-~~~~-~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~ 90 (1341)
+-+|+||. +.+.+++|||+ ++++.|+ +++|++|+++. ++.+ .....|.+ +|-+++|+.|
T Consensus 20 ~ev~~pP~-DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~-----------PvL~v~Wsdd---- 83 (347)
T KOG0647|consen 20 YEVPNPPE-DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDG-----------PVLDVCWSDD---- 83 (347)
T ss_pred eecCCCcc-cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCC-----------CeEEEEEccC----
Confidence 46777764 57999999994 3777776 78999999976 4443 34556777 8999999976
Q ss_pred ccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe
Q 000707 91 DLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS 170 (1341)
Q Consensus 91 ~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~ 170 (1341)
|..+++|+.|+.+++||+.+++.... ..|.+ +|..+.|.+.... ..|++++.|.+|+.||++..+
T Consensus 84 ----------gskVf~g~~Dk~~k~wDL~S~Q~~~v---~~Hd~-pvkt~~wv~~~~~-~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 84 ----------GSKVFSGGCDKQAKLWDLASGQVSQV---AAHDA-PVKTCHWVPGMNY-QCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred ----------CceEEeeccCCceEEEEccCCCeeee---eeccc-ceeEEEEecCCCc-ceeEecccccceeecccCCCC
Confidence 57899999999999999999976554 45777 9999999986532 699999999999999999999
Q ss_pred EEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000707 171 CMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1341)
Q Consensus 171 ~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1341)
++.++.. ++.+.+...- -..++++..+..|.++.+..... ++ .+.+ +| .
T Consensus 149 pv~t~~L-PeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~t------e~---------k~~~----------Sp--L 197 (347)
T KOG0647|consen 149 PVATLQL-PERVYAADVL---YPMAVVATAERHIAVYNLENPPT------EF---------KRIE----------SP--L 197 (347)
T ss_pred eeeeeec-cceeeehhcc---CceeEEEecCCcEEEEEcCCCcc------hh---------hhhc----------Cc--c
Confidence 9988887 7777766543 24666777778888887754211 11 1111 11 1
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEcCCC--ceeEEEecCCCc-------cceEEEEEcCCCCEEEEEecCCcE
Q 000707 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYE--TPLFSAALPRGC-------AKFLDVLADPNNDLLYCAHLDGKL 321 (1341)
Q Consensus 251 ~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~--~~l~~~~l~~~~-------~~~~~v~~~pdg~~L~s~~~DgtI 321 (1341)
.. .+.+++.-+|....+.++..|.+-|..+..+ ..--++.-||.. .++-+++|.|.-..|++++.||++
T Consensus 198 k~--Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 198 KW--QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred cc--eeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE
Confidence 11 2445577788888899999999999999886 222334445532 235577888988899999999999
Q ss_pred EEEeccCC
Q 000707 322 SIWRRKEG 329 (1341)
Q Consensus 322 ~lW~~~~g 329 (1341)
..||....
T Consensus 276 ~FWDkdar 283 (347)
T KOG0647|consen 276 SFWDKDAR 283 (347)
T ss_pred EEecchhh
Confidence 99997643
No 132
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.9e-15 Score=156.50 Aligned_cols=307 Identities=16% Similarity=0.163 Sum_probs=201.2
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 179 ~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
...|.+++|.| .+...++++...++++..... . .+. ...++.... +...+.++ ...+.+.+..
T Consensus 32 sqairav~fhp-~g~lyavgsnskt~ric~yp~-l-~~~-r~~hea~~~-pp~v~~kr------------~khhkgsiyc 94 (350)
T KOG0641|consen 32 SQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPA-L-IDL-RHAHEAAKQ-PPSVLCKR------------NKHHKGSIYC 94 (350)
T ss_pred hhheeeEEecC-CCceEEeccCCceEEEEcccc-c-cCc-ccccccccC-CCeEEeee------------ccccCccEEE
Confidence 56789999999 888999998888877753211 0 000 000000000 00000000 1234445666
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcC--CCcee-EEEecCCCccceEEEEEc--C--CCCEEEEEec-CCcEEEEeccCCc
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQ--YETPL-FSAALPRGCAKFLDVLAD--P--NNDLLYCAHL-DGKLSIWRRKEGE 330 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~--t~~~l-~~~~l~~~~~~~~~v~~~--p--dg~~L~s~~~-DgtI~lW~~~~g~ 330 (1341)
.++||+|+.+++++.|++|++.-.. +.+.. ..+.+..+.+.+.+++|- | .|.+|++++. |-.|.+=|..+|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 7999999999999999999886554 33322 122222344556666663 3 3567887654 5566666777776
Q ss_pred eeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcC
Q 000707 331 QVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDD 410 (1341)
Q Consensus 331 ~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~D 410 (1341)
..+.+.+ ++ | -|+++-.+ ++-.++++|.|
T Consensus 175 ~~~a~sg-ht-----g------hilalysw---------------------------------------n~~m~~sgsqd 203 (350)
T KOG0641|consen 175 GFHALSG-HT-----G------HILALYSW---------------------------------------NGAMFASGSQD 203 (350)
T ss_pred cceeecC-Cc-----c------cEEEEEEe---------------------------------------cCcEEEccCCC
Confidence 5555522 11 1 23222221 15689999999
Q ss_pred CeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCcccccee
Q 000707 411 GKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFK 490 (1341)
Q Consensus 411 G~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 490 (1341)
.+|++||+....+.+.+. +. +.
T Consensus 204 ktirfwdlrv~~~v~~l~------------------------------------~~------~~---------------- 225 (350)
T KOG0641|consen 204 KTIRFWDLRVNSCVNTLD------------------------------------ND------FH---------------- 225 (350)
T ss_pred ceEEEEeeeccceeeecc------------------------------------Cc------cc----------------
Confidence 999999997665543210 00 00
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCC
Q 000707 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN 570 (1341)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d 570 (1341)
-.| | .++.|+++++.| .|++||+|-.|....+||+..|+.++.|..|+..|+++.|+|.
T Consensus 226 --~~g-l--essavaav~vdp----------------sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 226 --DGG-L--ESSAVAAVAVDP----------------SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred --CCC-c--ccceeEEEEECC----------------CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC
Confidence 000 0 257899999998 5899999999999999999999999999999999999999998
Q ss_pred CcEEEEecCCcccccCcccCeEEEEEccCCce--eeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 571 SRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN--RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~--~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
..++. +++||+.|++.|+...-. -++.+.. .|...+-.++|+|..--+++.+.|+++.+|.+
T Consensus 285 a~yll---------t~syd~~ikltdlqgdla~el~~~vv~-ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 285 AHYLL---------TCSYDMKIKLTDLQGDLAHELPIMVVA-EHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred ceEEE---------EecccceEEEeecccchhhcCceEEEE-eccCceEEEEecCccceeeeccCcceEEEecc
Confidence 75442 345667999999864321 1222322 37778888999999888899999999999976
No 133
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.4e-17 Score=184.92 Aligned_cols=234 Identities=13% Similarity=0.112 Sum_probs=178.3
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCC
Q 000707 17 MLPGPPSRNNFGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1341)
++||| +.|+.-+|.| +|+.| -.+.+++|...+|.++.++.+|-. .||+++|+-|
T Consensus 79 v~Pg~-----v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-----------~ITcL~fs~d-------- 134 (476)
T KOG0646|consen 79 VLPGP-----VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-----------SITCLKFSDD-------- 134 (476)
T ss_pred ccccc-----eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcc-----------ceeEEEEeCC--------
Confidence 89997 5699999999 44444 468999999999999999999998 8999999965
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCC---------CeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEE
Q 000707 95 TEPGSSHLLLAAADRHGRVALLDFRL---------RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1341)
Q Consensus 95 ~~~~p~g~~LASg~~dG~I~vWDv~t---------g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1341)
|..+.||+.||.|.+|++.+ -..++.| .+|+- +|+++...+.+.+ -.|.+++.|.++++||
T Consensus 135 ------gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f--~~Htl-sITDl~ig~Gg~~-~rl~TaS~D~t~k~wd 204 (476)
T KOG0646|consen 135 ------GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF--SDHTL-SITDLQIGSGGTN-ARLYTASEDRTIKLWD 204 (476)
T ss_pred ------CcEEEecCCCccEEEEEEEeecccccCCCccceeee--ccCcc-eeEEEEecCCCcc-ceEEEecCCceEEEEE
Confidence 57899999999999998732 1234443 56777 9999998876543 6899999999999999
Q ss_pred CCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccc--ceeeeeEEEecCcchhhhhhhhhccccC
Q 000707 166 TTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED--EVVVKELQIQTDCTELLKLERELSAGAA 243 (1341)
Q Consensus 166 ~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~--~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1341)
+..|..+.++.+ +..+.+++.|| -.+++-+|+.+|.|.+.++..-.+- +...|.+... ....+
T Consensus 205 lS~g~LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~--~t~~~----------- 269 (476)
T KOG0646|consen 205 LSLGVLLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEE--NTQIN----------- 269 (476)
T ss_pred eccceeeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccc--cceee-----------
Confidence 999999998888 78999999999 7899999999999999876542210 1101111100 00000
Q ss_pred CCCCCCCcCcc--ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEE
Q 000707 244 SLSPASGLFPL--YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDV 303 (1341)
Q Consensus 244 ~~~p~~~~~~~--~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v 303 (1341)
...++.+ .|.+++++-||..|+++..|+.|+|||..+.|+++++..-++....+.+
T Consensus 270 ----~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i 327 (476)
T KOG0646|consen 270 ----VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQI 327 (476)
T ss_pred ----eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEe
Confidence 1112222 5777799999999999999999999999999999877633344444444
No 134
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.75 E-value=8.6e-17 Score=187.68 Aligned_cols=217 Identities=15% Similarity=0.186 Sum_probs=147.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEE---EEe-cCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEE-
Q 000707 100 SHLLLAAADRHGRVALLDFRLRSVV---LWI-DPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK- 174 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~~~---~~l-~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~- 174 (1341)
...+||.++.||.|++.|...-... +.| ....|-+ .|.++.|.|.. ..|+++++|.++++||+.+++++..
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~n-AifDl~wapge---~~lVsasGDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKN-AIFDLKWAPGE---SLLVSASGDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccc-eeEeeccCCCc---eeEEEccCCceeeeeeeccceeecce
Confidence 4578999999999999998654322 111 1246777 99999999943 7899999999999999999988876
Q ss_pred -EeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceee--eeEEEe--cCcchhhhhhhhhccccCCCCCCC
Q 000707 175 -YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVV--KELQIQ--TDCTELLKLERELSAGAASLSPAS 249 (1341)
Q Consensus 175 -~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~--k~~~i~--~~~~~l~~l~~~~~~~s~~~~p~~ 249 (1341)
+-+|...|.+++|.|+|+..||+|+.||.|++||..-...+.... ..+++. +.......+.+..-. .
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k--------~ 210 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK--------W 210 (720)
T ss_pred eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc--------c
Confidence 778888999999999999999999999999999985422100000 001110 000111111111000 0
Q ss_pred CcCccceEE---EEEccCCCceEEEEc-CCeEEEEEcCCCceeEE------EecCCC---ccceEEEEEcCCCCEEEEEe
Q 000707 250 GLFPLYMVK---FTFSPHWRHIIFVTF-PRELVVFDLQYETPLFS------AALPRG---CAKFLDVLADPNNDLLYCAH 316 (1341)
Q Consensus 250 ~~~~~~v~~---~afSpdg~~l~~~~~-d~~I~iwDl~t~~~l~~------~~l~~~---~~~~~~v~~~pdg~~L~s~~ 316 (1341)
.++...+.+ +.|..|..+|++++. |+.|+|||+....+... ...+-+ ..++..+....-|.+|+...
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC 290 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC 290 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe
Confidence 111122333 567788899999997 99999999998755321 111111 22345555556678888888
Q ss_pred cCCcEEEEeccC
Q 000707 317 LDGKLSIWRRKE 328 (1341)
Q Consensus 317 ~DgtI~lW~~~~ 328 (1341)
.|++|..|++.+
T Consensus 291 tD~sIy~ynm~s 302 (720)
T KOG0321|consen 291 TDNSIYFYNMRS 302 (720)
T ss_pred cCCcEEEEeccc
Confidence 899999999874
No 135
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.4e-15 Score=182.52 Aligned_cols=476 Identities=14% Similarity=0.166 Sum_probs=282.9
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 26 NFGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
+.....||+|+ .+....++.|.|+-..+++++.+|++|.. .++.+.+-|.. +.-.++
T Consensus 18 ~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-----------~l~s~~~~~~~-----------~~~~~~ 75 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTA-----------PLTSVIVLPSS-----------ENANYL 75 (792)
T ss_pred eecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccC-----------ccceeeecCCC-----------ccceEE
Confidence 56788999999 56667889999999999999999999998 89999999864 234678
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeec------------CC-------------------------
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVS------------KP------------------------- 147 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~------------~~------------------------- 147 (1341)
.+++-||+|++||...+..+..++... +|.++-+.|. ++
T Consensus 76 ~~~sl~G~I~vwd~~~~~Llkt~~~~~----~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~ 151 (792)
T KOG1963|consen 76 IVCSLDGTIRVWDWSDGELLKTFDNNL----PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDS 151 (792)
T ss_pred EEEecCccEEEecCCCcEEEEEEecCC----ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccc
Confidence 899999999999999999888775422 2222211000 00
Q ss_pred -------------------CccEEEEEeCCCeEEEEECCCCeEEEEE------eCCCCceEEEEEcCCCCCEEEEEeCCC
Q 000707 148 -------------------DSFVLAAINGPSVLSLYNTTSASCMWKY------DASPEYLSCIRRNPFDARHFCVLGLKG 202 (1341)
Q Consensus 148 -------------------~~~lLas~s~d~~i~lWd~~tg~~i~~~------~~~~~~v~~~~fsP~d~~~la~~~~dG 202 (1341)
.+.+.+.. -+..+.+|++.+++ +.. ..|..+++|++++| .++.+|++-.||
T Consensus 152 ~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dG 227 (792)
T KOG1963|consen 152 AKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDG 227 (792)
T ss_pred cchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEecccc--eeeccchhhhhhcccceeEEecc-ccceEEEeccCC
Confidence 00111111 12355678777654 211 12344679999999 999999999999
Q ss_pred eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEc
Q 000707 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDL 282 (1341)
Q Consensus 203 ~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl 282 (1341)
.|++|.-.+. . ...+. .++ -||- ...|.+++||+||..|++++..+-+.+|-+
T Consensus 228 rI~vw~d~~~-~----~~~~t--------~t~-lHWH-------------~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 228 RILVWRDFGS-S----DDSET--------CTL-LHWH-------------HDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred cEEEEecccc-c----ccccc--------ceE-EEec-------------ccccceeEEecCCceEeecccceEEEEEee
Confidence 9999954331 0 00100 000 0221 224778899999999999999999999999
Q ss_pred CCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccC
Q 000707 283 QYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQS 362 (1341)
Q Consensus 283 ~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~ 362 (1341)
+++.. + -|+|=.+++..++.+||++......+|..|-+-...+-+...++.+.. | +- ++
T Consensus 281 ~T~~k--q-fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~---~------~~---------~~ 339 (792)
T KOG1963|consen 281 ETGKK--Q-FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK---P------PT---------PS 339 (792)
T ss_pred cCCCc--c-cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc---C------CC---------cc
Confidence 99973 2 256778999999999999988888899999888764332112211100 0 00 00
Q ss_pred cchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccc------cccccCCC
Q 000707 363 ESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQK------DAIKSGMD 436 (1341)
Q Consensus 363 ~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~------~~~~~g~~ 436 (1341)
.| ...+. -...++++| ....++.-+..|.|.++|+-+...+..+. .+...-..
T Consensus 340 -------~k---~~~~~--------l~t~~~idp---r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 340 -------TK---TRPQS--------LTTGVSIDP---RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred -------cc---ccccc--------cceeEEEcC---CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 00 00000 012233333 13366677788999999987776553211 00000000
Q ss_pred cccccccc--cCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEE----------E-eeeccccCcc
Q 000707 437 ADVIDVAL--CGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVS----------L-DGQLQILSST 503 (1341)
Q Consensus 437 ~~~~~v~~--~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----------l-~g~l~g~~~~ 503 (1341)
..+..+++ .|.- |.++..+..-..+ ...++.+||. | +-...-|...
T Consensus 399 v~itav~~~~~gs~-----------------maT~E~~~d~~~~----~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 399 VGITAVARSRFGSW-----------------MATLEARIDKFNF----FDGEVSLKFWQYNPNSKTFILNTKINNPHGNA 457 (792)
T ss_pred EeeeeehhhccceE-----------------EEEeeeeehhhhc----cCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence 11111111 0100 1100000000000 0012344442 1 1122335555
Q ss_pred eEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----------cEEEEEeecCCCeEEEEEcCCCcE
Q 000707 504 VTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----------AVTASFSVHNGTVRGLRWLGNSRL 573 (1341)
Q Consensus 504 vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----------~~~~~l~~H~~~V~~l~fs~d~~l 573 (1341)
+.+..+.++ ......++++.||.++||-+... .|...-.-|..++.+.+|+.||.+
T Consensus 458 ~vat~~~~~--------------~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsl 523 (792)
T KOG1963|consen 458 FVATIFLNP--------------TRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSL 523 (792)
T ss_pred eEEEEEecC--------------cccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcE
Confidence 555555553 12338899999999999998322 233333348899999999999999
Q ss_pred EEEecCCcccccCcccCeEEEEEccC-CceeeeEEeccCCCCCeEEEEECCCC--CEEEEEECCCcEEEEeccCCCcee
Q 000707 574 VSFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIML 649 (1341)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~~~~~~~I~~i~~SpdG--~~Las~s~D~~I~vWDl~~t~~~l 649 (1341)
++.|++ ++|.+||..+ .. +....+...-++..+.+.... ...++......+.+|++ .+..+.
T Consensus 524 la~s~~----------~~Itiwd~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNl-l~~~l~ 588 (792)
T KOG1963|consen 524 LAVSFD----------DTITIWDYDTKNE---LLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNL-LSMSLI 588 (792)
T ss_pred EEEecC----------CEEEEecCCChhh---hhccccccccchHhHhhhcccccccceeeccCceEehHhh-hhhhee
Confidence 988876 4899999977 32 111111122344444443211 22334445678899998 555443
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.1e-16 Score=171.07 Aligned_cols=200 Identities=14% Similarity=0.138 Sum_probs=158.8
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
.-++++|++- |.+||+|..||.|.|||+.|...-+. +.+|.. ||+++|||++| +.|++++
T Consensus 25 ~a~~~~Fs~~--------------G~~lAvGc~nG~vvI~D~~T~~iar~--lsaH~~-pi~sl~WS~dg---r~LltsS 84 (405)
T KOG1273|consen 25 LAECCQFSRW--------------GDYLAVGCANGRVVIYDFDTFRIARM--LSAHVR-PITSLCWSRDG---RKLLTSS 84 (405)
T ss_pred ccceEEeccC--------------cceeeeeccCCcEEEEEccccchhhh--hhcccc-ceeEEEecCCC---CEeeeec
Confidence 3678999975 67899999999999999999876555 478888 99999999998 9999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecC-cchhhhhh
Q 000707 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTD-CTELLKLE 235 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~-~~~l~~l~ 235 (1341)
.|..|++||+..|.++..+.+ +.+|+.++|.|.+.+.+++.-.+-.-.+.++++.. .. .+..+ .+.++
T Consensus 85 ~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~------h~-~Lp~d~d~dln--- 153 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK------HS-VLPKDDDGDLN--- 153 (405)
T ss_pred CCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEecCCc------ee-eccCCCccccc---
Confidence 999999999999999999999 78999999999777777666555556666665311 11 11111 00111
Q ss_pred hhhccccCCCCCCCCcCccceE-EEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEE
Q 000707 236 RELSAGAASLSPASGLFPLYMV-KFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYC 314 (1341)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~-~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s 314 (1341)
.+. ...|.+.|+.++++...|.+.++|.++-+++..+.+.. ...+-++.++..|+.|+.
T Consensus 154 -------------------~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~lii 213 (405)
T KOG1273|consen 154 -------------------SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLII 213 (405)
T ss_pred -------------------cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEE
Confidence 111 12699999999999999999999999999988877642 356778888889999999
Q ss_pred EecCCcEEEEecc
Q 000707 315 AHLDGKLSIWRRK 327 (1341)
Q Consensus 315 ~~~DgtI~lW~~~ 327 (1341)
-..|..||.++.+
T Consensus 214 NtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 214 NTSDRVIRTYEIS 226 (405)
T ss_pred ecCCceEEEEehh
Confidence 9999999999876
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=3.4e-18 Score=201.55 Aligned_cols=238 Identities=20% Similarity=0.330 Sum_probs=182.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEec
Q 000707 530 PLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQ 609 (1341)
Q Consensus 530 ~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~ 609 (1341)
-+++.+-.+-.+++||. +++..|+..|.++.....++++. .|+.+..+-||.+.. .-++..+.
T Consensus 5 ~~~m~~~~~t~Lr~~~~------~~~~~hsaav~~lk~~~s~r~~~---------~Gg~~~k~~L~~i~k--p~~i~S~~ 67 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDT------REFVAHSAAVGCLKIRKSSRSLV---------TGGEDEKVNLWAIGK--PNAITSLT 67 (825)
T ss_pred cccceeeeeeccccccc------hhhhhhhhhhceeeeeccceeec---------cCCCceeeccccccC--Cchhheee
Confidence 34455555667889986 45668888888887654555543 455666777887633 22444556
Q ss_pred cCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCCCC
Q 000707 610 KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHK 686 (1341)
Q Consensus 610 ~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~ 686 (1341)
+ |+.+|.+|.|+++...|+.|+.+|+||+||+ ..+..+|+|.+ ++..+.|+|-
T Consensus 68 ~-hespIeSl~f~~~E~LlaagsasgtiK~wDl-eeAk~vrtLtgh~~~~~sv~f~P~---------------------- 123 (825)
T KOG0267|consen 68 G-HESPIESLTFDTSERLLAAGSASGTIKVWDL-EEAKIVRTLTGHLLNITSVDFHPY---------------------- 123 (825)
T ss_pred c-cCCcceeeecCcchhhhcccccCCceeeeeh-hhhhhhhhhhccccCcceeeeccc----------------------
Confidence 6 8999999999999999999999999999999 68887787653 4567777753
Q ss_pred CccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecC-CeeecccCCCCCCccccccceEEEEee--
Q 000707 687 ADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG-RRIRDFRPKWPSSSFISSDGLITAMAY-- 763 (1341)
Q Consensus 687 ~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~-~~v~~~~~~~~~~~l~~~~~~v~sla~-- 763 (1341)
++.+|.++.|+.+++||++. +....+ .+|.+.|..+.|
T Consensus 124 ------------------------------~~~~a~gStdtd~~iwD~Rk~Gc~~~~---------~s~~~vv~~l~lsP 164 (825)
T KOG0267|consen 124 ------------------------------GEFFASGSTDTDLKIWDIRKKGCSHTY---------KSHTRVVDVLRLSP 164 (825)
T ss_pred ------------------------------eEEeccccccccceehhhhccCceeee---------cCCcceeEEEeecC
Confidence 46678899999999999964 333322 257777777777
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccC
Q 000707 764 RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQP 842 (1341)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~g 842 (1341)
+|+++++|+.|.++++||+..|+ +..|.+|.+.|..+.|+|. . -.+++++.|++|++||+++.+ +....
T Consensus 165 ~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~--e----~Lla~Gs~d~tv~f~dletfe-~I~s~--- 234 (825)
T KOG0267|consen 165 DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL--E----VLLAPGSSDRTVRFWDLETFE-VISSG--- 234 (825)
T ss_pred CCceeeccCCcceeeeecccccccccccccccccccccccCch--h----hhhccCCCCceeeeeccceeE-Eeecc---
Confidence 99999999999999999999998 6789999999999999998 2 457889999999999999887 32222
Q ss_pred CCCCCcEEEEEEcCC
Q 000707 843 QFPGTLVLELDWLPT 857 (1341)
Q Consensus 843 h~~~~~V~~l~ws~~ 857 (1341)
......|.++.|+|+
T Consensus 235 ~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPD 249 (825)
T ss_pred CCccCCceeeeecCC
Confidence 111356999999998
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.74 E-value=7e-17 Score=178.61 Aligned_cols=248 Identities=19% Similarity=0.281 Sum_probs=176.0
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC----------------CcEEEEEeecCCCe
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA----------------NAVTASFSVHNGTV 562 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t----------------g~~~~~l~~H~~~V 562 (1341)
.|-+.+..++..+- ++..+.|+=+..|.|+|||+.. .+.+.++.+|.+.=
T Consensus 149 ~h~g~~NRvr~~~~--------------~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EG 214 (440)
T KOG0302|consen 149 PHYGGINRVRVSRL--------------GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEG 214 (440)
T ss_pred ccccccceeeeccc--------------CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccc
Confidence 46667777777761 1467889999999999999852 12466788999999
Q ss_pred EEEEEcC--CCcEEEEecCCcccccCcccCeEEEEEccCCceeee-EEeccCCCCCeEEEEECCCC-CEEEEEECCCcEE
Q 000707 563 RGLRWLG--NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF-RVLQKPERAPIRALRASSSG-RYLLILFRDAPVE 638 (1341)
Q Consensus 563 ~~l~fs~--d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l-~~l~~~~~~~I~~i~~SpdG-~~Las~s~D~~I~ 638 (1341)
.+|+|+| .|++++ |...+.|.+|-..+|..+.= +-+.+ |...|+.++|||.. ..||+||-|++|+
T Consensus 215 y~LdWSp~~~g~Lls----------GDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 215 YGLDWSPIKTGRLLS----------GDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred eeeeccccccccccc----------CccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeecCceEE
Confidence 9999998 456653 33446899999988763210 11224 78889999999864 5678899999999
Q ss_pred EEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCC
Q 000707 639 VWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSE 718 (1341)
Q Consensus 639 vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e 718 (1341)
|||+ +.+.. ++ ++
T Consensus 284 IWDi-Rs~~~-----~~--~~----------------------------------------------------------- 296 (440)
T KOG0302|consen 284 IWDI-RSGPK-----KA--AV----------------------------------------------------------- 296 (440)
T ss_pred EEEe-cCCCc-----cc--ee-----------------------------------------------------------
Confidence 9998 44310 00 00
Q ss_pred eEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEeec--CCEEEEEeCCCcEEEEECCCCc----eeeecc
Q 000707 719 SFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGH----SSQFST 792 (1341)
Q Consensus 719 ~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~d--g~~LasGs~DgtI~lWDl~tg~----~~~l~g 792 (1341)
+ . ..|.+.|+.|+|+ -.+||+|+.||+++|||++.-+ ..+|.-
T Consensus 297 ---~-----------------~-----------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~ 345 (440)
T KOG0302|consen 297 ---S-----------------T-----------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY 345 (440)
T ss_pred ---E-----------------e-----------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe
Confidence 0 0 0133457888883 3489999999999999998633 468999
Q ss_pred CCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCc--------------cccccccCCCCCCcEEEEEEcCCC
Q 000707 793 HREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP--------------LANSLLQPQFPGTLVLELDWLPTR 858 (1341)
Q Consensus 793 H~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~--------------l~~~l~~gh~~~~~V~~l~ws~~~ 858 (1341)
|+.+|++|.|+|... ..||+++.|..|.|||+..... +...|+.-|.+...|.++.|++.
T Consensus 346 Hk~pItsieW~p~e~-----s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~Q- 419 (440)
T KOG0302|consen 346 HKAPITSIEWHPHED-----SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQ- 419 (440)
T ss_pred ccCCeeEEEeccccC-----ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccC-
Confidence 999999999999743 5789999999999999864321 11113334544467899999986
Q ss_pred CCCCCCeEEEEEECCCcEEEEE
Q 000707 859 TDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 859 ~~~g~~~~Las~s~DgtIrvWd 880 (1341)
.|-+|++.+.||- -||.
T Consensus 420 ----iPG~lvsTa~dGf-nVfk 436 (440)
T KOG0302|consen 420 ----IPGLLVSTAIDGF-NVFK 436 (440)
T ss_pred ----CCCeEEEecccce-eEEE
Confidence 4447889999984 4443
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=2.9e-16 Score=168.46 Aligned_cols=199 Identities=25% Similarity=0.381 Sum_probs=143.0
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCc
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~ 581 (1341)
+.|++-+|+|- . ....++|+|+.|-.||+-|+.+|...++|+||...|.+++|+|...++.+
T Consensus 144 ~~VYshamSp~--a-----------~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLa----- 205 (397)
T KOG4283|consen 144 GKVYSHAMSPM--A-----------MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLA----- 205 (397)
T ss_pred ceeehhhcChh--h-----------hcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEE-----
Confidence 35666677772 1 13569999999999999999999999999999999999999998866643
Q ss_pred ccccCcccCeEEEEEccCCceeeeEEec-------------cCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc-
Q 000707 582 NEKSGGYINRLVVTCLRSGINRAFRVLQ-------------KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI- 647 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~-------------~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~- 647 (1341)
+|+.|+.+++||++... -+++++. ..|.+.|..++|+.||+++++++.|..+++|++ ..|.
T Consensus 206 ---tgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~-~~G~n 280 (397)
T KOG4283|consen 206 ---TGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM-ESGRN 280 (397)
T ss_pred ---ecCCCceEEEEEeeccc-ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec-ccCcc
Confidence 45667899999996421 1344332 125678899999999999999999999999999 4553
Q ss_pred eeeeccCce-----EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE
Q 000707 648 MLRSLALPF-----TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1341)
Q Consensus 648 ~l~~l~~~v-----~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~ 722 (1341)
-++.+. ++ ++..+. .+..+...|+.
T Consensus 281 tl~~~g-~~~~n~~~~~~~~-------------------------------------------------~~~~~s~vfv~ 310 (397)
T KOG4283|consen 281 TLREFG-PIIHNQTTSFAVH-------------------------------------------------IQSMDSDVFVL 310 (397)
T ss_pred cccccc-cccccccccceEE-------------------------------------------------EeecccceEEE
Confidence 233322 11 000000 00122345566
Q ss_pred EecCCcEEEEEe-cCCeeecccCCCCCCccccccceEEEEeecC--CEEEEEeCCCcEEEEEC
Q 000707 723 ALANGALGVFEV-HGRRIRDFRPKWPSSSFISSDGLITAMAYRL--PHVVMGDRSGNIRWWDV 782 (1341)
Q Consensus 723 ~~~Dg~I~vwdv-~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg--~~LasGs~DgtI~lWDl 782 (1341)
--.++++.++++ ++..++.++ +|-..|.|-++.+ +.+.+|+.|++|..|-+
T Consensus 311 ~p~~~~lall~~~sgs~ir~l~---------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 311 FPNDGSLALLNLLEGSFVRRLS---------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EecCCeEEEEEccCceEEEeee---------cccceeeEEeecCchhhhhccccCCccccccc
Confidence 667789999987 676665431 4556688888844 56899999999999987
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=6.8e-16 Score=174.71 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=201.7
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 179 ~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
+..|+++.|+| ....+.++|.||.++++.+.|+.-.- ++... ...+|+. .
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~--lqS~~-------------------------l~~fPi~--~ 262 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPK--LQSIH-------------------------LEKFPIQ--K 262 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChh--heeee-------------------------eccCccc--e
Confidence 57899999999 77888999999999999887743210 11111 1223433 4
Q ss_pred EEEccCCC-ceEEEEcCCeEEEEEcCCCceeEEEecCCCcc-ceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeee
Q 000707 259 FTFSPHWR-HIIFVTFPRELVVFDLQYETPLFSAALPRGCA-KFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 259 ~afSpdg~-~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~-~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
++|+|+|. .+++++.-+-+..||+++.+....-+..+... .+..+..++++.+|+..+..|-|-|-..++++.++.+
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~- 341 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF- 341 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee-
Confidence 59999999 67777777889999999987654333222222 3344556899999999999999999999998866555
Q ss_pred cccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEE
Q 000707 337 TMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNW 416 (1341)
Q Consensus 337 ~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lW 416 (1341)
..+. .+...+|+. +++.|.+.+.+|.|++|
T Consensus 342 KieG------------~v~~~~fsS--------------------------------------dsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 342 KIEG------------VVSDFTFSS--------------------------------------DSKELLASGGTGEVYVW 371 (514)
T ss_pred eecc------------EEeeEEEec--------------------------------------CCcEEEEEcCCceEEEE
Confidence 1111 334444431 25688889999999999
Q ss_pred EccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeee
Q 000707 417 LLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQ 496 (1341)
Q Consensus 417 dl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~ 496 (1341)
|+....+... +.-.|.
T Consensus 372 nl~~~~~~~r----------------------------------------------------------------f~D~G~ 387 (514)
T KOG2055|consen 372 NLRQNSCLHR----------------------------------------------------------------FVDDGS 387 (514)
T ss_pred ecCCcceEEE----------------------------------------------------------------EeecCc
Confidence 9976644321 111111
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC------CcEEEEEeecCCCeEEEEEcCC
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA------NAVTASFSVHNGTVRGLRWLGN 570 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t------g~~~~~l~~H~~~V~~l~fs~d 570 (1341)
+. -|+++.++ ++.++|+|+..|.|.|||..+ -+.++.+..-+..|++|.|+++
T Consensus 388 v~-----gts~~~S~----------------ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 388 VH-----GTSLCISL----------------NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred cc-----eeeeeecC----------------CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 11 13445444 578999999999999999643 2355666666788999999999
Q ss_pred CcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEecc--CCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 571 SRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQK--PERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~--~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
+.+++.+.. ...+.++|.-+.+-. .+.-.+. ..-..|+|++|||.|-|||.|-.++.+.+|.+
T Consensus 447 ~qiLAiaS~-------~~knalrLVHvPS~T--VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 447 AQILAIASR-------VKKNALRLVHVPSCT--VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred hhhhhhhhh-------ccccceEEEecccee--eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 988865543 345688888776533 3332221 13356899999999999999999999999987
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.72 E-value=2.7e-16 Score=178.27 Aligned_cols=284 Identities=19% Similarity=0.214 Sum_probs=202.0
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 179 ~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
.+.|-.++++- ..+++-++| +|.|++||++.... +..++ .|.-+ .-.+++.+
T Consensus 419 GEvVcAvtIS~-~trhVyTgG-kgcVKVWdis~pg~------k~Pvs----qLdcl----------------~rdnyiRS 470 (705)
T KOG0639|consen 419 GEVVCAVTISN-PTRHVYTGG-KGCVKVWDISQPGN------KSPVS----QLDCL----------------NRDNYIRS 470 (705)
T ss_pred CcEEEEEEecC-CcceeEecC-CCeEEEeeccCCCC------CCccc----ccccc----------------Ccccceee
Confidence 45666777776 557777777 59999999876321 11110 01101 11247888
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecc
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTM 338 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~ 338 (1341)
|..+||||.|+++++-.++-||||+..+..-...+....-.-..++.+||.++.+++..||.|.|||......++.+.+
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG- 549 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG- 549 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-
Confidence 9999999999999999999999999876542233332222334566789999999999999999999986554444421
Q ss_pred cccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEc
Q 000707 339 EELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418 (1341)
Q Consensus 339 ~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl 418 (1341)
+ .|.. +|.-+..+|+.|-+++-|.+||-||+
T Consensus 550 --------h------------------------------------tDGa-----scIdis~dGtklWTGGlDntvRcWDl 580 (705)
T KOG0639|consen 550 --------H------------------------------------TDGA-----SCIDISKDGTKLWTGGLDNTVRCWDL 580 (705)
T ss_pred --------C------------------------------------CCCc-----eeEEecCCCceeecCCCccceeehhh
Confidence 1 1111 11122234789999999999999999
Q ss_pred cccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeecc
Q 000707 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQ 498 (1341)
Q Consensus 419 ~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~ 498 (1341)
..++.+.++
T Consensus 581 regrqlqqh----------------------------------------------------------------------- 589 (705)
T KOG0639|consen 581 REGRQLQQH----------------------------------------------------------------------- 589 (705)
T ss_pred hhhhhhhhh-----------------------------------------------------------------------
Confidence 876533210
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCc-EEEEe
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR-LVSFS 577 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~-llS~s 577 (1341)
..++-|++|..|| .+.+||+|-+++.|.|-.. ++.....+.-|.+-|.+|.|.+-|+ ++|.+
T Consensus 590 dF~SQIfSLg~cP----------------~~dWlavGMens~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 590 DFSSQIFSLGYCP----------------TGDWLAVGMENSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hhhhhheecccCC----------------CccceeeecccCcEEEEec-CCccceeecccccEEEEEEecccCceeeecC
Confidence 0134577788888 5899999999999999886 4556667788999999999999886 45543
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
. ||-+..|...-|.. .|. ..+.++|.++.+|.|.+|+++|+.|+.-.||.+
T Consensus 653 k----------DnlLnawrtPyGas-iFq---skE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 653 K----------DNLLNAWRTPYGAS-IFQ---SKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred c----------hhhhhhccCccccc-eee---ccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3 55778898877762 233 346789999999999999999999988888865
No 142
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=5.3e-17 Score=193.07 Aligned_cols=197 Identities=18% Similarity=0.271 Sum_probs=147.8
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC--cEEEE
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS--RLVSF 576 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~--~llS~ 576 (1341)
.|...++++.|++. .-.+|++|+.||+|++||+....-..++.+.+..|++|.|+|.. .|++.
T Consensus 131 EH~Rs~~~ldfh~t---------------ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~ 195 (839)
T KOG0269|consen 131 EHERSANKLDFHST---------------EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI 195 (839)
T ss_pred hhccceeeeeeccC---------------CccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence 37788999999982 34689999999999999999888888888989999999998843 45543
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc--eeeecc-
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI--MLRSLA- 653 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~--~l~~l~- 653 (1341)
+| .|.+++||+|.-. +++..+. .|.++|.++.|+|++.|||+|++|+.|+|||++ ++. .+.++.
T Consensus 196 -~d---------sG~lqlWDlRqp~-r~~~k~~-AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t-~~~~~~~~tInT 262 (839)
T KOG0269|consen 196 -HD---------SGYLQLWDLRQPD-RCEKKLT-AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT-DSRAKPKHTINT 262 (839)
T ss_pred -cC---------CceEEEeeccCch-hHHHHhh-cccCceEEEeecCCCceeeecCCCccEEEEecc-CCCccceeEEee
Confidence 32 2589999997643 2444433 499999999999999999999999999999994 332 222222
Q ss_pred -CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEe--cCCcEE
Q 000707 654 -LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL--ANGALG 730 (1341)
Q Consensus 654 -~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~--~Dg~I~ 730 (1341)
.++..+.|-|+- .-+||+++ .|-.|+
T Consensus 263 iapv~rVkWRP~~---------------------------------------------------~~hLAtcsmv~dtsV~ 291 (839)
T KOG0269|consen 263 IAPVGRVKWRPAR---------------------------------------------------SYHLATCSMVVDTSVH 291 (839)
T ss_pred cceeeeeeeccCc---------------------------------------------------cchhhhhhccccceEE
Confidence 367889998751 13455543 578899
Q ss_pred EEEecCCeeecccCCCCCCccccccceEEEEeecC---CEEEEEeCCCcEEEEE
Q 000707 731 VFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRL---PHVVMGDRSGNIRWWD 781 (1341)
Q Consensus 731 vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg---~~LasGs~DgtI~lWD 781 (1341)
|||+... -+|...|..|+..++.|+|++ ..|.+++.||+|..-.
T Consensus 292 VWDvrRP-------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~ 338 (839)
T KOG0269|consen 292 VWDVRRP-------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHL 338 (839)
T ss_pred EEeeccc-------cccceeeeccCccccceeccCCCceeeEeecCccHHHHhh
Confidence 9999642 234455668999999999943 5677888888774433
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=4.1e-15 Score=161.29 Aligned_cols=288 Identities=17% Similarity=0.223 Sum_probs=190.4
Q ss_pred eeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc--EEEEE--eecCCCeEEEEEcCC
Q 000707 495 GQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA--VTASF--SVHNGTVRGLRWLGN 570 (1341)
Q Consensus 495 g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~--~~~~l--~~H~~~V~~l~fs~d 570 (1341)
..|-||...||+++|+. +|+.||+.+.|++|||||+..-. ..+.+ ..--+.-+.+.|.||
T Consensus 80 ~~LKgH~~~vt~~~FsS----------------dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapD 143 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSS----------------DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPD 143 (420)
T ss_pred hhhhccCCceeeeEEcC----------------CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCC
Confidence 35778999999999997 69999999999999999986421 11111 011123367899999
Q ss_pred CcEEEEecCCcccccCcccCeEEEEEcc---CCce-eeeE-----EeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEe
Q 000707 571 SRLVSFSYSQVNEKSGGYINRLVVTCLR---SGIN-RAFR-----VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 571 ~~llS~s~d~~~~~sg~~~~~i~lwD~~---tG~~-~~l~-----~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWD 641 (1341)
.+-+.++.- . .++++++-+. .|.- -++. .+...|..+|-.+-.--.+.|+++++.|..|-|||
T Consensus 144 c~s~vv~~~-----~---g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~ 215 (420)
T KOG2096|consen 144 CKSVVVSVK-----R---GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWD 215 (420)
T ss_pred cceEEEEEc-----c---CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEe
Confidence 754444432 1 2477777652 2221 0000 01122556777788888899999999999999999
Q ss_pred ccCCCceeeeccCce---EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCC
Q 000707 642 MTKNPIMLRSLALPF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSE 718 (1341)
Q Consensus 642 l~~t~~~l~~l~~~v---~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e 718 (1341)
+ + |+.+.++..+. +..+ ..|++.
T Consensus 216 l-k-Gq~L~~idtnq~~n~~aa----------------------------------------------------vSP~GR 241 (420)
T KOG2096|consen 216 L-K-GQLLQSIDTNQSSNYDAA----------------------------------------------------VSPDGR 241 (420)
T ss_pred c-C-Cceeeeecccccccccee----------------------------------------------------eCCCCc
Confidence 9 5 77777654221 1111 124567
Q ss_pred eEEEEecCCcEEEEEe---cCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCC----Cc---
Q 000707 719 SFAFALANGALGVFEV---HGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT----GH--- 786 (1341)
Q Consensus 719 ~la~~~~Dg~I~vwdv---~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~t----g~--- 786 (1341)
.+|+++..--|++|.+ +....+.++..+ +|.||...|.+++| +...+++.|.||++|+||+.- ++
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf---~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVF---SLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhh---eeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCch
Confidence 7788888888999997 222222211111 35589999999999 678999999999999999863 22
Q ss_pred -eeee--c--cCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCC
Q 000707 787 -SSQF--S--THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDK 861 (1341)
Q Consensus 787 -~~~l--~--gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~ 861 (1341)
++.. + .-.+.--++..+|. | +.||+. ...+++++..++++.+ ..+..-|. .-|.++.|+++
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~--g----~~lA~s-~gs~l~~~~se~g~~~-~~~e~~h~--~~Is~is~~~~---- 384 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPS--G----DSLAVS-FGSDLKVFASEDGKDY-PELEDIHS--TTISSISYSSD---- 384 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCC--C----cEEEee-cCCceEEEEcccCccc-hhHHHhhc--CceeeEEecCC----
Confidence 1222 1 11233348999998 4 445554 5667999999888732 33433453 67999999998
Q ss_pred CCCeEEEEEECCCcEEEEE
Q 000707 862 NDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 862 g~~~~Las~s~DgtIrvWd 880 (1341)
|+ +++++ .|.-+||.-
T Consensus 385 g~--~~atc-Gdr~vrv~~ 400 (420)
T KOG2096|consen 385 GK--YIATC-GDRYVRVIR 400 (420)
T ss_pred Cc--EEeee-cceeeeeec
Confidence 66 56665 478888875
No 144
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=5.7e-13 Score=155.42 Aligned_cols=172 Identities=10% Similarity=0.144 Sum_probs=116.9
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
.|.-|+|.|||. ...||. +.++.|+|+.+|..++. +++|.. .|++++|+.+| ...|||+
T Consensus 14 ci~d~afkPDGs------------qL~lAA---g~rlliyD~ndG~llqt--LKgHKD-tVycVAys~dG---krFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGT------------QLILAA---GSRLLVYDTSDGTLLQP--LKGHKD-TVYCVAYAKDG---KRFASGS 72 (1081)
T ss_pred chheeEECCCCc------------eEEEec---CCEEEEEeCCCcccccc--cccccc-eEEEEEEccCC---ceeccCC
Confidence 688999999862 223333 34799999999999998 489988 99999999988 8999999
Q ss_pred CCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000707 157 GPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1341)
.|..|.+|+..- +-+.++.. .+.|.|++|+| -..+|++++...+- +|. + . ...+.+
T Consensus 73 aDK~VI~W~~kl-EG~LkYSH-~D~IQCMsFNP-~~h~LasCsLsdFg-lWS--~---~---------------qK~V~K 128 (1081)
T KOG1538|consen 73 ADKSVIIWTSKL-EGILKYSH-NDAIQCMSFNP-ITHQLASCSLSDFG-LWS--P---E---------------QKSVSK 128 (1081)
T ss_pred CceeEEEecccc-cceeeecc-CCeeeEeecCc-hHHHhhhcchhhcc-ccC--h---h---------------hhhHHh
Confidence 999999999752 22334543 78999999999 67888888764333 231 1 0 001111
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCC-CccceEEEEEcC
Q 000707 237 ELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPR-GCAKFLDVLADP 307 (1341)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~-~~~~~~~v~~~p 307 (1341)
+ .....|++|++..||..++.+..+|+|.|-+ ++|+....+.-++ ..+++.++.+||
T Consensus 129 ~-------------kss~R~~~CsWtnDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p 186 (1081)
T KOG1538|consen 129 H-------------KSSSRIICCSWTNDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNP 186 (1081)
T ss_pred h-------------hhheeEEEeeecCCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecC
Confidence 1 0112488899999999999999999987774 3344332222221 224455555444
No 145
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.69 E-value=6.2e-16 Score=168.70 Aligned_cols=279 Identities=14% Similarity=0.168 Sum_probs=197.1
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCC--cEEEEe
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNS--RLVSFS 577 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~--~llS~s 577 (1341)
|....+.++++-.+- ...+++|.|+.-|.|+|.|+.++++.+.+.+|..+|+.|.|.|+. .++|+|
T Consensus 88 ~~Esfytcsw~yd~~------------~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSN------------TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred CCcceEEEEEEecCC------------CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec
Confidence 455667777775311 136899999999999999999999999999999999999999976 556655
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceE
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFT 657 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~ 657 (1341)
.| ..|++|+++++.+..+-.--+.|.+.|.+|.|+++|.++++++.|.+|++|++ ...+....++.
T Consensus 156 kD----------~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l-~~~~f~~~lE~--- 221 (385)
T KOG1034|consen 156 KD----------HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRL-NVKEFKNKLEL--- 221 (385)
T ss_pred CC----------ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEec-ChhHHhhhhhh---
Confidence 54 48999999999854433222348999999999999999999999999999999 55444333332
Q ss_pred EEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCC
Q 000707 658 VLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR 737 (1341)
Q Consensus 658 ~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~ 737 (1341)
+..|+|....+++ +.. .+.+.+....
T Consensus 222 s~~~~~~~t~~pf--------------------------------------------pt~----------~~~fp~fst~ 247 (385)
T KOG1034|consen 222 SITYSPNKTTRPF--------------------------------------------PTP----------KTHFPDFSTT 247 (385)
T ss_pred hcccCCCCccCcC--------------------------------------------Ccc----------cccccccccc
Confidence 2346554222110 000 0011111111
Q ss_pred eeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECC-CC---------c-----eeeeccCCCcEEEEEE
Q 000707 738 RIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVT-TG---------H-----SSQFSTHREGIRRIKF 802 (1341)
Q Consensus 738 ~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~-tg---------~-----~~~l~gH~~~V~~V~f 802 (1341)
. -|...|-|+.|=|++++|=|-++.|.+|-.. -+ + +..|.--...|.-|+|
T Consensus 248 d--------------iHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf 313 (385)
T KOG1034|consen 248 D--------------IHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRF 313 (385)
T ss_pred c--------------cccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEE
Confidence 1 2556788888988999999999999999871 11 1 2234445667888888
Q ss_pred ccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 803 SP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+-|.-+ +.||.+...|.|.+||++..++...+....+..+..|...+|+.| +. +|+....|++|--||..
T Consensus 314 ~~d~~~----~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d----gs--~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 314 AFDPWQ----KMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD----GS--ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eecHHH----HHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeeccc----Cc--EEEEEeCCCcEEEEEee
Confidence 766322 668888899999999999888633332222334578999999987 44 57788899999999864
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.7e-15 Score=160.67 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=129.4
Q ss_pred CcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEE
Q 000707 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1341)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1341)
..|+.|+|+|.. ..|+.++.||.++++|+........+ .|.. |+.+++|.++ ..++++
T Consensus 14 d~IS~v~f~~~~--------------~~LLvssWDgslrlYdv~~~~l~~~~---~~~~-plL~c~F~d~----~~~~~G 71 (323)
T KOG1036|consen 14 DGISSVKFSPSS--------------SDLLVSSWDGSLRLYDVPANSLKLKF---KHGA-PLLDCAFADE----STIVTG 71 (323)
T ss_pred hceeeEEEcCcC--------------CcEEEEeccCcEEEEeccchhhhhhe---ecCC-ceeeeeccCC----ceEEEe
Confidence 389999999753 45666679999999999877655554 3445 9999999874 467889
Q ss_pred eCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhh
Q 000707 156 NGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLE 235 (1341)
Q Consensus 156 s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~ 235 (1341)
+-||.|+++|+.+|+-. .+..|.+.+.|+.+.+ -...++++|-|+.|.+||......... +
T Consensus 72 ~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~----~------------- 132 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGT----F------------- 132 (323)
T ss_pred ccCceEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccc----c-------------
Confidence 99999999999988653 3444578999999998 567888999999999999753211000 0
Q ss_pred hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000707 236 RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1341)
..+.-|. +-+-.|..|+.++.++.|.+||+............+-......|..-|++.-.+++
T Consensus 133 ---------------d~~kkVy--~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 133 ---------------DQGKKVY--CMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred ---------------ccCceEE--EEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEE
Confidence 0011244 22344678899999999999999876432211111111223445555666666666
Q ss_pred ecCCcEE
Q 000707 316 HLDGKLS 322 (1341)
Q Consensus 316 ~~DgtI~ 322 (1341)
+.||+|-
T Consensus 196 SieGRVa 202 (323)
T KOG1036|consen 196 SIEGRVA 202 (323)
T ss_pred eecceEE
Confidence 6666654
No 147
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.69 E-value=1e-12 Score=154.90 Aligned_cols=375 Identities=18% Similarity=0.233 Sum_probs=249.2
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe-EEEEecCCCCCCCCe
Q 000707 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS-VVLWIDPDPNPKLGI 137 (1341)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~-~~~~l~~~~h~~~~V 137 (1341)
.+.+|.. .|..+.|.+. +..++.++.|+.+.+||...+. ....+.. .+.. .+
T Consensus 60 ~~~~~~~-----------~i~~~~~~~~--------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 112 (466)
T COG2319 60 LLRGHED-----------SITSIAFSPD--------------GELLLSGSSDGTIKLWDLDNGEKLIKSLEG-LHDS-SV 112 (466)
T ss_pred eeeeccc-----------eEEEEEECCC--------------CcEEEEecCCCcEEEEEcCCCceeEEEEec-cCCC-ce
Confidence 4567777 8999999875 5678888899999999998886 5555422 1222 57
Q ss_pred eEEEE-eecCCCccEEEEEeC-CCeEEEEECCC-CeEEEEEeCCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEecCCc
Q 000707 138 QDLCW-IVSKPDSFVLAAING-PSVLSLYNTTS-ASCMWKYDASPEYLSCIRRNPFDARHFCVLGL-KGLLLSVRVLGQK 213 (1341)
Q Consensus 138 ~~l~w-sp~~~~~~lLas~s~-d~~i~lWd~~t-g~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~-dG~i~~~d~~~~~ 213 (1341)
..+.+ .+++ ..+++..+. |+.+.+||..+ +..+..+..|.+.+.+++|+| +++.+++++. ++.+.+|+.....
T Consensus 113 ~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 189 (466)
T COG2319 113 SKLALSSPDG--NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGK 189 (466)
T ss_pred eeEEEECCCc--ceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCc
Confidence 77777 5544 235555444 99999999987 677777888888999999999 7778888875 9999999864310
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC-ceEEEEcCCeEEEEEcCCCceeE-EE
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR-HIIFVTFPRELVVFDLQYETPLF-SA 291 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~-~l~~~~~d~~I~iwDl~t~~~l~-~~ 291 (1341)
. ...+ . .+...+..++|+|+++ .++.++.|+.|++||...+..+. .+
T Consensus 190 ~----~~~~------------~---------------~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~ 238 (466)
T COG2319 190 P----LSTL------------A---------------GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL 238 (466)
T ss_pred e----EEee------------c---------------cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeec
Confidence 0 1110 0 1222467789999998 44444899999999999887776 34
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCce-eeeeecccccccccCccCCCCceEEEEEccCcchhhhhh
Q 000707 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQ-VHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVA 370 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~-~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~ 370 (1341)
..+. ..... .++|++..+++++.|+.+++|+.+.... +..+.+. ...+..+.+.|
T Consensus 239 ~~~~--~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~~~--------- 294 (466)
T COG2319 239 SGHS--DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH------------SSSVLSVAFSP--------- 294 (466)
T ss_pred CCCC--cceeE-eECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC------------CccEEEEEECC---------
Confidence 3332 22121 6789999999999999999999886543 1111000 01222222222
Q ss_pred hcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccc
Q 000707 371 KLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTN 450 (1341)
Q Consensus 371 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~ 450 (1341)
.+..+++++.|+.+.+|++........ .
T Consensus 295 -----------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~-----------------------~ 322 (466)
T COG2319 295 -----------------------------DGKLLASGSSDGTVRLWDLETGKLLSS-----------------------L 322 (466)
T ss_pred -----------------------------CCCEEEEeeCCCcEEEEEcCCCceEEE-----------------------e
Confidence 144677788899999997655431110 0
Q ss_pred cCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCC
Q 000707 451 SMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVP 530 (1341)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~ 530 (1341)
. ..+|...+..+.+ ++ ++.
T Consensus 323 -------------------------------------------~--~~~~~~~~~~~~~-~~---------------~~~ 341 (466)
T COG2319 323 -------------------------------------------T--LKGHEGPVSSLSF-SP---------------DGS 341 (466)
T ss_pred -------------------------------------------e--ecccCCceEEEEE-CC---------------CCC
Confidence 0 1124446777777 43 224
Q ss_pred EEEEE-eCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEec
Q 000707 531 LVALG-TQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQ 609 (1341)
Q Consensus 531 llAsG-s~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~ 609 (1341)
.++.+ ..|+.+++|++...........+. .+..+.+.+ . ....+ .+..++.+.+|+...... .....
T Consensus 342 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~ 409 (466)
T COG2319 342 LLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVS-------SGSTDGTVRLWDLSTGSL--LRNLD 409 (466)
T ss_pred EEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEE-------EecCCCceEEEecccCee--eeecc
Confidence 44444 788999999998877222222222 278888877 5 22222 122346899999988763 22222
Q ss_pred cCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCC
Q 000707 610 KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKN 645 (1341)
Q Consensus 610 ~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t 645 (1341)
. +...+....+++++.++++++.+.++++|+. .+
T Consensus 410 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 443 (466)
T COG2319 410 G-HTSRVTSLDFSPDGKSLASGSSDNTIRLWDL-KT 443 (466)
T ss_pred C-CCCcEEEEEECCCCcEEEEecCCCcEEEEec-cC
Confidence 2 1168899999999999999999999999998 45
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.68 E-value=8.9e-16 Score=174.15 Aligned_cols=242 Identities=11% Similarity=0.116 Sum_probs=186.3
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCCc---ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCC
Q 000707 26 NFGSADLSPSG-LLAFASGSSISILDSRSL---QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~~~---~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1341)
.|-|+..|... .+-+|..++|.|||+... -.+..|+--+. .-.|.+++.+|| |
T Consensus 421 vVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~r---------dnyiRSckL~pd--------------g 477 (705)
T KOG0639|consen 421 VVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNR---------DNYIRSCKLLPD--------------G 477 (705)
T ss_pred EEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCc---------ccceeeeEecCC--------------C
Confidence 34477887554 677788899999998542 22333332211 116777887765 6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1341)
+.|++|+.--++-|||+.........++... +...++|+.+||. ++..++-.||.|.|||+.....+..+.+|++.
T Consensus 478 rtLivGGeastlsiWDLAapTprikaeltss-apaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG 553 (705)
T KOG0639|consen 478 RTLIVGGEASTLSIWDLAAPTPRIKAELTSS-APACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG 553 (705)
T ss_pred ceEEeccccceeeeeeccCCCcchhhhcCCc-chhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCC
Confidence 8899999999999999987765544444432 2267889999987 78888889999999999999999999999999
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000707 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~af 261 (1341)
+.|+..++ |+.+|=++|.|.+|++||+... ++. . +..+...|.++.+
T Consensus 554 ascIdis~-dGtklWTGGlDntvRcWDlreg-------rql------------q-------------qhdF~SQIfSLg~ 600 (705)
T KOG0639|consen 554 ASCIDISK-DGTKLWTGGLDNTVRCWDLREG-------RQL------------Q-------------QHDFSSQIFSLGY 600 (705)
T ss_pred ceeEEecC-CCceeecCCCccceeehhhhhh-------hhh------------h-------------hhhhhhhheeccc
Confidence 99999999 9999999999999999997541 111 1 1223346888899
Q ss_pred ccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 262 SPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 262 Spdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
+|.+.+++.++..+.+.|......+. ..++-+.+-++++-|.+-|+++++.+.|.-+-.|+..-|.
T Consensus 601 cP~~dWlavGMens~vevlh~skp~k---yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa 666 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPEK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 666 (705)
T ss_pred CCCccceeeecccCcEEEEecCCccc---eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc
Confidence 99999999999999988887765443 2334455778899898889999999999999999887665
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=5.6e-15 Score=179.19 Aligned_cols=246 Identities=15% Similarity=0.157 Sum_probs=194.7
Q ss_pred CCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 22 PSRNNFGSADLSPSG--LLAFASGSSISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 22 ~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~~~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
.|......+.|.|+| ++..|+++.|++|+..+. ..-.++..|.. .|.+++-
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~-----------~v~~ia~--------------- 64 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGE-----------LVSSIAC--------------- 64 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCc-----------eeEEEee---------------
Confidence 466667789999999 455567889999987665 22223333544 6777753
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCe---EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRS---VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~---~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1341)
++.+|++|+.+++|.++.+.+++ .+..|.+ ++.+++++.+| .++|.|+.|-.|++-++.++.....+
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl------p~r~~~v~g~g---~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTL------PIRDLAVSGSG---KMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeec------cceEEEEecCC---cEEEeecCceeEEEEeccccchheee
Confidence 34689999999999999998775 4455533 89999999877 89999999999999999998888889
Q ss_pred eCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCC-CCCcCcc
Q 000707 176 DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSP-ASGLFPL 254 (1341)
Q Consensus 176 ~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p-~~~~~~~ 254 (1341)
.+|..+|.++.|+| .+..||+.+.||.|++||+...... + .+.+. .+ .+.....
T Consensus 135 rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~----~------------tl~~v--------~k~n~~~~s~ 189 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILS----K------------TLTGV--------DKDNEFILSR 189 (933)
T ss_pred cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhh----h------------hcccC--------Cccccccccc
Confidence 99999999999999 8999999999999999998653211 0 11110 00 0001012
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
-|.+++|+|+|.++++...|++|.+++.+.......+......+.|..+.++|.|.+||++..||-|.|||+++
T Consensus 190 i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 190 ICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred eeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 36789999999999999999999999999999888887766667788899999999999999999999999984
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=1.4e-15 Score=171.84 Aligned_cols=235 Identities=17% Similarity=0.223 Sum_probs=168.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc---EEE------------------EEeecCCCeEEEEEcCCCcEEEEecCCcccccC
Q 000707 528 AVPLVALGTQSGAVDVVDVSANA---VTA------------------SFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSG 586 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~---~~~------------------~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg 586 (1341)
.|.++|.|++|-.|.|||+.--. ... .-++|+.+|-+|.|....+-|.+ +|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLa--------Sg 262 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLA--------SG 262 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEE--------ec
Confidence 47899999999999999985211 011 12479999999999887654433 45
Q ss_pred cccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCC-CCEEEEEECCCcEEEEeccCCCcee---eeccCceEEEEEc
Q 000707 587 GYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSS-GRYLLILFRDAPVEVWAMTKNPIML---RSLALPFTVLEWT 662 (1341)
Q Consensus 587 ~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~Spd-G~~Las~s~D~~I~vWDl~~t~~~l---~~l~~~v~~l~ws 662 (1341)
+.|.+|++||+.+|+ +.+++. +|..+|.++.|+|. ..+|++|+.|+++.+.|. +..... -.+...+..+.|.
T Consensus 263 saD~TV~lWD~~~g~--p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~-R~~~~s~~~wk~~g~VEkv~w~ 338 (463)
T KOG0270|consen 263 SADKTVKLWDVDTGK--PKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC-RDPSNSGKEWKFDGEVEKVAWD 338 (463)
T ss_pred CCCceEEEEEcCCCC--cceehh-hcCCceeEEEecCCCceEEEeccccceEEeeec-cCccccCceEEeccceEEEEec
Confidence 567799999999999 444444 47889999999985 689999999999999999 532211 1122345667776
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecC--Ceee
Q 000707 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHG--RRIR 740 (1341)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~--~~v~ 740 (1341)
|-. ...|.++..||+++-+|++. +.+.
T Consensus 339 ~~s---------------------------------------------------e~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 339 PHS---------------------------------------------------ENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred CCC---------------------------------------------------ceeEEEecCCceEEeeecCCCCCcee
Confidence 420 13466778999999999953 3332
Q ss_pred cccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCceeeeccCC---CcEEEEEEccCCCCCCCCCE
Q 000707 741 DFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHR---EGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 741 ~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~---~~V~~V~fSP~~~gd~~~~~ 814 (1341)
. +..|++.|.++++ ...+|++++.|+.|++|++..-..+....|. ++..|.++-|+.+ ..
T Consensus 368 t---------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a-----~~ 433 (463)
T KOG0270|consen 368 T---------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVA-----FT 433 (463)
T ss_pred E---------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcc-----eE
Confidence 2 2368899999999 3458999999999999999654332222222 3456667777755 57
Q ss_pred EEEEECCCeEEEEECCCCCcccccc
Q 000707 815 IAVLFHDNTFSVFDLDSQDPLANSL 839 (1341)
Q Consensus 815 Las~s~DgtI~IWDl~~~~~l~~~l 839 (1341)
+|.++.-+.++|||+.+..++.+.+
T Consensus 434 la~GG~k~~~~vwd~~~~~~V~kaF 458 (463)
T KOG0270|consen 434 LAFGGEKAVLRVWDIFTNSPVRKAF 458 (463)
T ss_pred EEecCccceEEEeecccChhHHHhh
Confidence 8999888899999999877554443
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.68 E-value=5.6e-15 Score=158.77 Aligned_cols=274 Identities=10% Similarity=0.099 Sum_probs=187.2
Q ss_pred CCCCCCCceEeCCC-C-eEEE-EcCCeEEEEeCCCcc-------e---eEe-ecCCCCCCCCCCCCCCCcEEEEEEccCC
Q 000707 22 PSRNNFGSADLSPS-G-LLAF-ASGSSISILDSRSLQ-------L---IST-IPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1341)
Q Consensus 22 ~~~~~~~a~~~s~~-g-llA~-gs~~~V~v~d~~~~~-------~---~~~-l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1341)
+|+..|++++.-+. | ++.+ |++++|.|||.++.. . +.. -..|+. .-.+.|+.+.|-|-.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~-------~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN-------GHKYAISSAIWYPID 113 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc-------cceeeeeeeEEeeec
Confidence 47778899888875 5 5555 578899999987632 1 111 112221 113489999999853
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC
Q 000707 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1341)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1341)
.-.+.|++.|.+++|||+.|-+..-.|..+ + .|..-+|+|-.-.-.++|++..+-.|+|-|+.
T Consensus 114 -------------tGmFtssSFDhtlKVWDtnTlQ~a~~F~me---~-~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~ 176 (397)
T KOG4283|consen 114 -------------TGMFTSSSFDHTLKVWDTNTLQEAVDFKME---G-KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA 176 (397)
T ss_pred -------------CceeecccccceEEEeecccceeeEEeecC---c-eeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence 347889999999999999998887777554 3 78888999876322688889999999999999
Q ss_pred CCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCC
Q 000707 168 SASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSP 247 (1341)
Q Consensus 168 tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p 247 (1341)
+|.+-+.+.+|.+.|.++.|+|...-.|++++.||.|++||+.-....- ..+. .+-+...+ .-.
T Consensus 177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf---~~lD------------~hn~k~~p-~~~ 240 (397)
T KOG4283|consen 177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCF---RVLD------------QHNTKRPP-ILK 240 (397)
T ss_pred CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccccee---EEee------------cccCccCc-ccc
Confidence 9999999999999999999999777788999999999999975421110 0010 00000000 000
Q ss_pred CCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCcee-EE-EecCCC-ccceEEEEEcCCCCEEEEEecCCcEEEE
Q 000707 248 ASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPL-FS-AALPRG-CAKFLDVLADPNNDLLYCAHLDGKLSIW 324 (1341)
Q Consensus 248 ~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l-~~-~~l~~~-~~~~~~v~~~pdg~~L~s~~~DgtI~lW 324 (1341)
+...+.+.+..++|+.|++++++.+.|..+++|+.+.|+.. .. .+.-+. ...+--...|-+.+.++-.=.|+++-+.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall 320 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALL 320 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEE
Confidence 12345567889999999999999999999999999988542 11 111111 0111111224555555555556677777
Q ss_pred eccCCceeeee
Q 000707 325 RRKEGEQVHVM 335 (1341)
Q Consensus 325 ~~~~g~~~~~~ 335 (1341)
..-+|++++.+
T Consensus 321 ~~~sgs~ir~l 331 (397)
T KOG4283|consen 321 NLLEGSFVRRL 331 (397)
T ss_pred EccCceEEEee
Confidence 66666655554
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.68 E-value=9.5e-16 Score=167.27 Aligned_cols=272 Identities=14% Similarity=0.195 Sum_probs=190.1
Q ss_pred Cccccc-cccCCCCCCCCCCceEeCCC---C--eEEE-EcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEE
Q 000707 10 DSWDCN-FMLPGPPSRNNFGSADLSPS---G--LLAF-ASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVK 82 (1341)
Q Consensus 10 ~~~~~~-~~lpg~~~~~~~~a~~~s~~---g--llA~-gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~ 82 (1341)
|-|-|. +..-.+.+.++.-.++|+-+ | ++|. |..+.|+|.|+.+++....+.+|.. .|+.++
T Consensus 74 d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----------sINeik 142 (385)
T KOG1034|consen 74 DGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----------SINEIK 142 (385)
T ss_pred ccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCc-----------cchhhh
Confidence 335552 22223345566777888642 3 5554 4568999999999999999999998 999999
Q ss_pred EccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEec-CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeE
Q 000707 83 WIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWID-PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1341)
Q Consensus 83 ~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~-~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1341)
|.|+. .++|+||+.|..||+||+++..++..|. ..||.. .|.++.|++++ +.++|++-|..|
T Consensus 143 ~~p~~-------------~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd-eVLSvD~~~~g---d~i~ScGmDhsl 205 (385)
T KOG1034|consen 143 FHPDR-------------PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD-EVLSVDFSLDG---DRIASCGMDHSL 205 (385)
T ss_pred cCCCC-------------CcEEEEecCCceEEEEeccCCeEEEEecccccccC-cEEEEEEcCCC---CeeeccCCcceE
Confidence 99974 5789999999999999999999999885 367888 99999999988 799999999999
Q ss_pred EEEECCCCeE------E---------------------E-EEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 162 SLYNTTSASC------M---------------------W-KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 162 ~lWd~~tg~~------i---------------------~-~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
++|++.+.+. . . +.+.|...|-|++|- +..+.+-+.++.|.+|.. |+.
T Consensus 206 k~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---gd~ilSkscenaI~~w~p-gkl 281 (385)
T KOG1034|consen 206 KLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---GDFILSKSCENAIVCWKP-GKL 281 (385)
T ss_pred EEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---hhheeecccCceEEEEec-chh
Confidence 9999974321 0 0 111233344455442 355666677889999864 111
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCce--eEEE
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP--LFSA 291 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~--l~~~ 291 (1341)
+.++ .+ +....... ++-+.+ .-..-..+.+.++|.|-++.|+.+...|.|.+|||+.... ..++
T Consensus 282 ~e~~--~~--vkp~es~~-Ti~~~~---------~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 282 EESI--HN--VKPPESAT-TILGEF---------DYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred hhhh--hc--cCCCccce-eeeeEe---------ccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 1111 00 00000000 000000 0011223456788899899999999999999999997665 2333
Q ss_pred ecCCCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 292 ALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
....+...+.+..++.||.+|+..-+|++|.-||+.
T Consensus 348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 334455678889999999999999999999999975
No 153
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1e-14 Score=158.06 Aligned_cols=242 Identities=14% Similarity=0.256 Sum_probs=169.6
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC----cEEEEEeecCCCeEEEEEcCC--C
Q 000707 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN----AVTASFSVHNGTVRGLRWLGN--S 571 (1341)
Q Consensus 498 ~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg----~~~~~l~~H~~~V~~l~fs~d--~ 571 (1341)
.+|..-|+++.|.+ +|+.+|+++.|++|+|||.... .+......|.+.|..|.|.+. |
T Consensus 10 s~h~DlihdVs~D~----------------~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF----------------YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecc----------------cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCcccc
Confidence 34677789999887 7999999999999999996433 467788999999999999653 4
Q ss_pred cE-EEEecCCcccccCcccCeEEEEEcc--C----C-ceeeeEEeccCCCCCeEEEEECCC--CCEEEEEECCCcEEEEe
Q 000707 572 RL-VSFSYSQVNEKSGGYINRLVVTCLR--S----G-INRAFRVLQKPERAPIRALRASSS--GRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 572 ~l-lS~s~d~~~~~sg~~~~~i~lwD~~--t----G-~~~~l~~l~~~~~~~I~~i~~Spd--G~~Las~s~D~~I~vWD 641 (1341)
++ +++++ |.++.||.-. + | +-+...++.. ....|+.|.|.|. |-.||+++.||.+|||+
T Consensus 74 qvvA~cS~----------Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYE 142 (361)
T KOG2445|consen 74 QVVATCSY----------DRTVSIWEEQEKSEEAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYE 142 (361)
T ss_pred ceEEEEec----------CCceeeeeecccccccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEe
Confidence 54 45554 4589999751 1 1 1122223333 5678999999985 78899999999999998
Q ss_pred ccCCCce------eeecc----------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCc
Q 000707 642 MTKNPIM------LRSLA----------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSK 705 (1341)
Q Consensus 642 l~~t~~~------l~~l~----------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 705 (1341)
. -.+-- .+++. .+-.++.|+|.-
T Consensus 143 A-~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr---------------------------------------- 181 (361)
T KOG2445|consen 143 A-PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSR---------------------------------------- 181 (361)
T ss_pred c-CCccccccchhhhhhhhccCCcccccCcceEEeecccc----------------------------------------
Confidence 7 33321 22221 011234444220
Q ss_pred CCCCCCccCCCCCeEEEEecC-----CcEEEEEec--CCeeecccCCCCCCccccccceEEEEee------cCCEEEEEe
Q 000707 706 DASSEGSQDDTSESFAFALAN-----GALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY------RLPHVVMGD 772 (1341)
Q Consensus 706 ~~~~~~s~~~~~e~la~~~~D-----g~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~------dg~~LasGs 772 (1341)
-..+.||+++.+ +.++||... +++.... .+|.+|...|.+++| .-.+||+++
T Consensus 182 ---------~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv------a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~ 246 (361)
T KOG2445|consen 182 ---------MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV------AELPDHTDPIRDISWAPNIGRSYHLLAVAT 246 (361)
T ss_pred ---------ccCceEEEEcccCCccccceEEEEecCCcceeeee------hhcCCCCCcceeeeeccccCCceeeEEEee
Confidence 013556776655 578888873 3343221 124468889999999 235799999
Q ss_pred CCCcEEEEECCCC----------------c-----eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEEC
Q 000707 773 RSGNIRWWDVTTG----------------H-----SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDL 829 (1341)
Q Consensus 773 ~DgtI~lWDl~tg----------------~-----~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl 829 (1341)
.|| |+||.++.. + +..+..|.+.|.++.|.=. | ..|++.+.||.||+|..
T Consensus 247 kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt--G----tiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 247 KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT--G----TILSSTGDDGCVRLWKA 317 (361)
T ss_pred cCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee--e----eEEeecCCCceeeehhh
Confidence 999 999999731 1 2246799999999999866 4 67888999999999964
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=2e-12 Score=152.43 Aligned_cols=281 Identities=21% Similarity=0.361 Sum_probs=196.5
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEe
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQ-SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~-DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s 577 (1341)
+|...|..++++| ++..+++++. |+.+++|++.++.....+.+|...|.+++|++++..+..+
T Consensus 153 ~~~~~v~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 153 GHSESVTSLAFSP----------------DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred cCcccEEEEEECC----------------CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 4677888999998 4667888875 9999999999988899999999999999999888633222
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeE-EeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCce-eeec---
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFR-VLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM-LRSL--- 652 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~-~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~-l~~l--- 652 (1341)
+..++.+++||..++. .+. .+.+ |.... ...|+|++.++++++.|+.+++||+ +.... +..+
T Consensus 217 --------~~~d~~i~~wd~~~~~--~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~ 283 (466)
T COG2319 217 --------GSSDGTIRLWDLSTGK--LLRSTLSG-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDL-RSSSSLLRTLSGH 283 (466)
T ss_pred --------ecCCCcEEEEECCCCc--EEeeecCC-CCcce-eEeECCCCCEEEEecCCCcEEEeee-cCCCcEEEEEecC
Confidence 1235688899988776 444 3444 55553 3389999999999999999999999 54432 2222
Q ss_pred cCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEE
Q 000707 653 ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1341)
Q Consensus 653 ~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vw 732 (1341)
...+..+.|.|+ ++.+++++.|+.+.+|
T Consensus 284 ~~~v~~~~~~~~----------------------------------------------------~~~~~~~~~d~~~~~~ 311 (466)
T COG2319 284 SSSVLSVAFSPD----------------------------------------------------GKLLASGSSDGTVRLW 311 (466)
T ss_pred CccEEEEEECCC----------------------------------------------------CCEEEEeeCCCcEEEE
Confidence 124455555542 3455668888889999
Q ss_pred EecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEE-eCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCC
Q 000707 733 EVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG-DRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPG 808 (1341)
Q Consensus 733 dv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasG-s~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~g 808 (1341)
+........... ...|...+..+.+ ++..++.+ ..|+.+++|++.... ......+ ..+..+.|++ . .
T Consensus 312 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~ 382 (466)
T COG2319 312 DLETGKLLSSLT------LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-G 382 (466)
T ss_pred EcCCCceEEEee------ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-C
Confidence 886544322111 0135455777777 22455555 788999999998876 2222222 2289999988 5 5
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 809 d~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.....+..++.+.+|+........ .. ..+. ..+....+.++ +. .+++++.++++++|++..
T Consensus 383 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 ----RVVSSGSTDGTVRLWDLSTGSLLR-NL-DGHT--SRVTSLDFSPD----GK--SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ----CEEEEecCCCceEEEecccCeeee-ec-cCCC--CcEEEEEECCC----Cc--EEEEecCCCcEEEEeccC
Confidence 444557899999999998876332 22 1111 46888999886 33 567789999999999886
No 155
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=4.5e-16 Score=185.27 Aligned_cols=234 Identities=15% Similarity=0.194 Sum_probs=174.9
Q ss_pred CceEeCCC--CeEEEEcC-CeEEEEeCCC---cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCC
Q 000707 28 GSADLSPS--GLLAFASG-SSISILDSRS---LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1341)
Q Consensus 28 ~a~~~s~~--gllA~gs~-~~V~v~d~~~---~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1341)
.-|.|+.- ++||+++- +.|.+||... .++++.|..|+. .|+++.|++-- .
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-----------s~~~ldfh~te-------------p 146 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER-----------SANKLDFHSTE-------------P 146 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhcc-----------ceeeeeeccCC-------------c
Confidence 35788832 48999875 6889999865 566788999998 89999999853 4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC-eEEEEEeCCCC
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA-SCMWKYDASPE 180 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg-~~i~~~~~~~~ 180 (1341)
.+|+||+.||+|++||++...-..++ .+.+. .|.++.|+|.. +..+++++..|.|++||++-. ++..++.+|.+
T Consensus 147 ~iliSGSQDg~vK~~DlR~~~S~~t~--~~nSE-SiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G 221 (839)
T KOG0269|consen 147 NILISGSQDGTVKCWDLRSKKSKSTF--RSNSE-SIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG 221 (839)
T ss_pred cEEEecCCCceEEEEeeecccccccc--cccch-hhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccC
Confidence 68999999999999999988777664 56777 89999999965 389999999999999999843 45667889999
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000707 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1341)
Q Consensus 181 ~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1341)
+|.|+.|+| +...||+||.|++|++||..+... ...+.| . +..| +.++.
T Consensus 222 pV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~----~~~~tI----------n--------------Tiap--v~rVk 270 (839)
T KOG0269|consen 222 PVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRA----KPKHTI----------N--------------TIAP--VGRVK 270 (839)
T ss_pred ceEEEeecC-CCceeeecCCCccEEEEeccCCCc----cceeEE----------e--------------ecce--eeeee
Confidence 999999999 999999999999999999764211 111111 0 0112 55779
Q ss_pred EccCCCceEEEE---cCCeEEEEEcCCCc-eeEEEecCCCccceEEEEE-cCCCCEEEEEecCCcEEE
Q 000707 261 FSPHWRHIIFVT---FPRELVVFDLQYET-PLFSAALPRGCAKFLDVLA-DPNNDLLYCAHLDGKLSI 323 (1341)
Q Consensus 261 fSpdg~~l~~~~---~d~~I~iwDl~t~~-~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~~DgtI~l 323 (1341)
|=|+.++++..+ .|..|.|||+.-.= +-.++.-| ...+..+++ +.|...|.+++.||+|..
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred eccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 999987665544 58999999998432 22333323 333444444 346667888888887753
No 156
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.4e-14 Score=155.36 Aligned_cols=252 Identities=18% Similarity=0.246 Sum_probs=169.3
Q ss_pred eecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccC--CceeeeEEeccCCCCCeEEEEECC--CCCEEEE
Q 000707 556 SVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVLQKPERAPIRALRASS--SGRYLLI 630 (1341)
Q Consensus 556 ~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l~~~~~~~I~~i~~Sp--dG~~Las 630 (1341)
.+|..-|.++.|..-| |++++|. |.+++|||.+. |.-.+....+. |.+.|..|.|-+ -|+.+|+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSs----------Dq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSS----------DQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred cCCcceeeeeeecccCceeeeccC----------CCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEE
Confidence 4788899999998877 5555554 45999999754 33333333333 788899888864 3999999
Q ss_pred EECCCcEEEEecc-CC----C-c--eeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCccccccc
Q 000707 631 LFRDAPVEVWAMT-KN----P-I--MLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIA 699 (1341)
Q Consensus 631 ~s~D~~I~vWDl~-~t----~-~--~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~ 699 (1341)
++.|+++.||.-. +. + + ...++. ..|+.+.|.|..
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~h---------------------------------- 124 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKH---------------------------------- 124 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchh----------------------------------
Confidence 9999999999741 00 0 1 111121 235666666431
Q ss_pred CCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe-cCCeeec------cc--CCCCCCccccccceEEEEee-----cC
Q 000707 700 SSSDSKDASSEGSQDDTSESFAFALANGALGVFEV-HGRRIRD------FR--PKWPSSSFISSDGLITAMAY-----RL 765 (1341)
Q Consensus 700 ~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv-~~~~v~~------~~--~~~~~~~l~~~~~~v~sla~-----dg 765 (1341)
-+-.+|+++.||.+|||+. +-..+.. +. ..-|+ .+.....|++| ..
T Consensus 125 ----------------lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~----~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 125 ----------------LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG----KNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred ----------------cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc----cccCcceEEeeccccccC
Confidence 1346899999999999997 3221111 00 01111 23345678999 34
Q ss_pred CEEEEEeCC-----CcEEEEECCCC--c---eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC--
Q 000707 766 PHVVMGDRS-----GNIRWWDVTTG--H---SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD-- 833 (1341)
Q Consensus 766 ~~LasGs~D-----gtI~lWDl~tg--~---~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~-- 833 (1341)
++||.|+.+ +.++||....+ + ..++.+|+.+|+.|+|+|..+- .-..||+++.|| |+||.+....
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr--~y~~lAvA~kDg-v~I~~v~~~~s~ 261 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGR--SYHLLAVATKDG-VRIFKVKVARSA 261 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCC--ceeeEEEeecCc-EEEEEEeeccch
Confidence 678888877 57889987653 3 3467999999999999998542 223589999999 9999987411
Q ss_pred -----ccc-----------cccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 834 -----PLA-----------NSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 834 -----~l~-----------~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.+. .....+|. ..|+.+.|+-. |. +|+|.|.||+||+|....
T Consensus 262 i~~ee~~~~~~~~~l~v~~vs~~~~H~--~~VWrv~wNmt----Gt--iLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 262 IEEEEVLAPDLMTDLPVEKVSELDDHN--GEVWRVRWNMT----GT--ILSSTGDDGCVRLWKANY 319 (361)
T ss_pred hhhhcccCCCCccccceEEeeeccCCC--CceEEEEEeee----ee--EEeecCCCceeeehhhhh
Confidence 000 01113444 68999999976 44 789999999999998654
No 157
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=6.1e-13 Score=161.90 Aligned_cols=467 Identities=14% Similarity=0.185 Sum_probs=265.4
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCC---CEEEEEecCCcEEEEeccCCceeeeee
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN---DLLYCAHLDGKLSIWRRKEGEQVHVMC 336 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg---~~L~s~~~DgtI~lW~~~~g~~~~~~~ 336 (1341)
.||+|+|.++. ..+..|.||..+||+++..+ +.+..+..++...|.. .++++.+.||+|++||-..++.+.++.
T Consensus 23 vfSnD~k~l~~-~~~~~V~VyS~~Tg~~i~~l--~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~ 99 (792)
T KOG1963|consen 23 VFSNDAKFLFL-CTGNFVKVYSTATGECITSL--EDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFD 99 (792)
T ss_pred ccccCCcEEEE-eeCCEEEEEecchHhhhhhc--ccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEe
Confidence 79999987654 46788999999999998854 4556777777665533 467789999999999999888777662
Q ss_pred cccccccccCccC-CCC---ceEEEEEccCcchhh----hhhhcccCCCC--C--CCCcc--ccCCCCcccccccccccc
Q 000707 337 TMEELIPSIGTSV-PSP---SILAVLVSQSESTIQ----NVAKLCLDAPH--S--PSANV--DIDSPFEFSDDTLLLSKT 402 (1341)
Q Consensus 337 ~~~~~~~~~g~~~-~~~---~v~a~~~~~~~~i~~----~~~k~~~~~~~--~--~~~~~--~~~~~~~~~~~~~~~~~~ 402 (1341)
.. .+.+..+- |.- ++.+..-..+-.+.. +..+.+++... . ..++. .-..|-.+..++ +.
T Consensus 100 ~~---~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~----~g 172 (792)
T KOG1963|consen 100 NN---LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN----SG 172 (792)
T ss_pred cC---CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC----Cc
Confidence 10 00000000 000 000000000000000 00011100000 0 00000 000011111111 23
Q ss_pred EEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCC
Q 000707 403 HLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTS 482 (1341)
Q Consensus 403 ~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (1341)
.+..+.-+..+.+|.++.+.. .. ++..
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~-~~------------------~~~~---------------------------------- 199 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTK-HT------------------SSRD---------------------------------- 199 (792)
T ss_pred eEEEEEEeeeEEEEEecccce-ee------------------ccch----------------------------------
Confidence 445555555566665544320 00 0000
Q ss_pred CccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC--C--cEEEEEeec
Q 000707 483 SQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA--N--AVTASFSVH 558 (1341)
Q Consensus 483 ~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t--g--~~~~~l~~H 558 (1341)
.+ --|.-.+++.+++| .+..+|+|..||.|.+|.-.. + .-.+.|.=|
T Consensus 200 ----------~~---~~Htf~~t~~~~sp----------------n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH 250 (792)
T KOG1963|consen 200 ----------IT---VHHTFNITCVALSP----------------NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH 250 (792)
T ss_pred ----------hh---hhhcccceeEEecc----------------ccceEEEeccCCcEEEEeccccccccccceEEEec
Confidence 00 01455689999998 589999999999999998533 1 134567789
Q ss_pred CCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEE
Q 000707 559 NGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVE 638 (1341)
Q Consensus 559 ~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~ 638 (1341)
..+|.+++|+++|..+- +|+..+.+.+|-+.|++.+.+-. -.++|..+.+|||+.+.+..-.|..|.
T Consensus 251 ~~~V~~L~fS~~G~~Ll---------SGG~E~VLv~Wq~~T~~kqfLPR----Lgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 251 HDEVNSLSFSSDGAYLL---------SGGREGVLVLWQLETGKKQFLPR----LGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred ccccceeEEecCCceEe---------ecccceEEEEEeecCCCcccccc----cCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 99999999999985442 35556689999999988333322 347999999999999999999999999
Q ss_pred EEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCC
Q 000707 639 VWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSE 718 (1341)
Q Consensus 639 vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e 718 (1341)
+-.+ .+....+++.+. .|.. +.. +++. ..+.+....++...
T Consensus 318 li~~-~dl~~k~tIsgi------~~~~-~~~-----k~~~--------------------------~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 318 LIKA-SDLEIKSTISGI------KPPT-PST-----KTRP--------------------------QSLTTGVSIDPRTN 358 (792)
T ss_pred EEec-cchhhhhhccCc------cCCC-ccc-----cccc--------------------------cccceeEEEcCCCC
Confidence 9877 444443333211 0110 000 0000 00000111123234
Q ss_pred eEEEEecCCcEEEEEecC-Ceeeccc---CC-CCCCccccccceEEEEee--cCCEEEEEe--------C--CCcEEEEE
Q 000707 719 SFAFALANGALGVFEVHG-RRIRDFR---PK-WPSSSFISSDGLITAMAY--RLPHVVMGD--------R--SGNIRWWD 781 (1341)
Q Consensus 719 ~la~~~~Dg~I~vwdv~~-~~v~~~~---~~-~~~~~l~~~~~~v~sla~--dg~~LasGs--------~--DgtI~lWD 781 (1341)
.++..+..|+|..||+.. ..+..+. .. ..+.. .+...+++++. .|.+++++. . .-.+|+|-
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~--n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~ 436 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV--NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQ 436 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcc--eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEE
Confidence 466777888888888732 2221110 00 01110 12223555555 688888764 2 34678897
Q ss_pred CCCCc----eee--eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcccc------ccccCCCCCCcE
Q 000707 782 VTTGH----SSQ--FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLAN------SLLQPQFPGTLV 849 (1341)
Q Consensus 782 l~tg~----~~~--l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~------~l~~gh~~~~~V 849 (1341)
..... +.+ ..-|+..+...+|.+... +.+.++++.||.++||-+...+.+.. -...++.+..++
T Consensus 437 ~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r----s~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i 512 (792)
T KOG1963|consen 437 YNPNSKTFILNTKINNPHGNAFVATIFLNPTR----SVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPI 512 (792)
T ss_pred EcCCcceeEEEEEEecCCCceeEEEEEecCcc----cceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcc
Confidence 75532 222 256888888888776521 13789999999999998843332110 011233334678
Q ss_pred EEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 850 LELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 850 ~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
..+.|+.| |. |++.|.|++|.+||-.+
T Consensus 513 ~a~~fs~d----Gs---lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 513 TALCFSQD----GS---LLAVSFDDTITIWDYDT 539 (792)
T ss_pred cchhhcCC----Cc---EEEEecCCEEEEecCCC
Confidence 89999987 43 56889999999999876
No 158
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=2.2e-16 Score=186.41 Aligned_cols=218 Identities=16% Similarity=0.287 Sum_probs=173.1
Q ss_pred cccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEe
Q 000707 498 QILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 498 ~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s 577 (1341)
..|+..|.++..-. .++.+++|+.|-.+-+|.+..-..+..|.+|..+|.+|.|..+.++|.+
T Consensus 25 ~~hsaav~~lk~~~----------------s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaa- 87 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRK----------------SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAA- 87 (825)
T ss_pred hhhhhhhceeeeec----------------cceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcc-
Confidence 34777777776532 4789999999999999998766667789999999999999998887753
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc--
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP-- 655 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~-- 655 (1341)
|..+++|++||++.++ .+|+|.+ |..++..+.|+|-|.|.|.|+.|..+++||. +..-|.+.+..+
T Consensus 88 --------gsasgtiK~wDleeAk--~vrtLtg-h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~-Rk~Gc~~~~~s~~~ 155 (825)
T KOG0267|consen 88 --------GSASGTIKVWDLEEAK--IVRTLTG-HLLNITSVDFHPYGEFFASGSTDTDLKIWDI-RKKGCSHTYKSHTR 155 (825)
T ss_pred --------cccCCceeeeehhhhh--hhhhhhc-cccCcceeeeccceEEeccccccccceehhh-hccCceeeecCCcc
Confidence 3445799999999887 7888887 8889999999999999999999999999999 554566666532
Q ss_pred -eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe
Q 000707 656 -FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1341)
Q Consensus 656 -v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv 734 (1341)
+..++|+|+ +..++.++.|.++++||.
T Consensus 156 vv~~l~lsP~----------------------------------------------------Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 156 VVDVLRLSPD----------------------------------------------------GRWVASGGEDNTVKIWDL 183 (825)
T ss_pred eeEEEeecCC----------------------------------------------------CceeeccCCcceeeeecc
Confidence 355677765 345677778999999999
Q ss_pred cCCee-ecccCCCCCCccccccceEEEEeec--CCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccC
Q 000707 735 HGRRI-RDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPV 805 (1341)
Q Consensus 735 ~~~~v-~~~~~~~~~~~l~~~~~~v~sla~d--g~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~ 805 (1341)
..+++ .+ |.+|.+.+.++.|+ .-.+++|+.|++|++||+++-+ +.....-...|.+++|.|+
T Consensus 184 ~agk~~~e---------f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 184 TAGKLSKE---------FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPD 249 (825)
T ss_pred cccccccc---------cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCC
Confidence 54443 33 33677888888873 3468899999999999998765 4444555889999999999
No 159
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.5e-14 Score=156.88 Aligned_cols=251 Identities=15% Similarity=0.166 Sum_probs=183.4
Q ss_pred CCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcE
Q 000707 26 NFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1341)
+..|+.||+.| +||.|+ ++.|+|||..+...-.+|.+|.- +|++++|||+ |+.
T Consensus 25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-----------pi~sl~WS~d--------------gr~ 79 (405)
T KOG1273|consen 25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-----------PITSLCWSRD--------------GRK 79 (405)
T ss_pred ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhcccc-----------ceeEEEecCC--------------CCE
Confidence 46799999999 999987 57999999999999899999998 9999999987 689
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecC-------------------------------------
Q 000707 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSK------------------------------------- 146 (1341)
Q Consensus 104 LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~------------------------------------- 146 (1341)
|.|+++|..|++||+..|.+++.+.+. . ||....|.|-.
T Consensus 80 LltsS~D~si~lwDl~~gs~l~rirf~---s-pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSPLKRIRFD---S-PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred eeeecCCceeEEEeccCCCceeEEEcc---C-ccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccc
Confidence 999999999999999999987766442 1 44444442211
Q ss_pred -------CCccEEEEEeCCCeEEEEECCCCeEEEEEeCCC-CceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccccee
Q 000707 147 -------PDSFVLAAINGPSVLSLYNTTSASCMWKYDASP-EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVV 218 (1341)
Q Consensus 147 -------~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~-~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~ 218 (1341)
..++++.+|.+.|-+-++|+.|-+++..+.-.. ..|..+.|+- .++.|+.-+.|..|+.++.+.- +..
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di---~~~ 231 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDI---DDE 231 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhh---ccc
Confidence 013677788888899999999888876654433 5677788875 8999999999999999875420 000
Q ss_pred eeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc-CCeEEEEEcCCCceeEEEecCCCc
Q 000707 219 VKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF-PRELVVFDLQYETPLFSAALPRGC 297 (1341)
Q Consensus 219 ~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~-d~~I~iwDl~t~~~l~~~~l~~~~ 297 (1341)
++.-. ....+++..... ...-..|+||.||..+..++. ...++||.-.+|.+++.+...+|
T Consensus 232 ~r~~e----~e~~~K~qDvVN-------------k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg- 293 (405)
T KOG1273|consen 232 GRDGE----VEPEHKLQDVVN-------------KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG- 293 (405)
T ss_pred CccCC----cChhHHHHHHHh-------------hhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-
Confidence 00000 000112221111 112346799999999888874 57899999999999887643322
Q ss_pred cceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 298 AKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 298 ~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
...++|.+.|-+..+++. +.|+|++|....
T Consensus 294 E~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 294 EELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hheeecccccceeeeeec-cCCceEEEEeec
Confidence 456777788888888888 789999998653
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.64 E-value=9.7e-16 Score=169.66 Aligned_cols=161 Identities=14% Similarity=0.186 Sum_probs=134.9
Q ss_pred CCCCCCceEeCC--CCeEEEE-cCCeEEEEeCCCcce---eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCC
Q 000707 23 SRNNFGSADLSP--SGLLAFA-SGSSISILDSRSLQL---ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTE 96 (1341)
Q Consensus 23 ~~~~~~a~~~s~--~gllA~g-s~~~V~v~d~~~~~~---~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~ 96 (1341)
|..-.-++|||| .|.|++| |.+.|++|.+.++.- -+.|.+|+. .|.-++|||.-
T Consensus 210 hk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~-----------SVEDLqWSptE--------- 269 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTK-----------SVEDLQWSPTE--------- 269 (440)
T ss_pred cCccceeeecccccccccccCccccceEeeeeccCceeecCcccccccc-----------chhhhccCCcc---------
Confidence 444556899999 4666666 668899999988753 245778998 89999999963
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC---CCeEEE
Q 000707 97 PGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT---SASCMW 173 (1341)
Q Consensus 97 ~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~---tg~~i~ 173 (1341)
...+|||+.||.|+|||++.+.....+..+.|.. -|+-|.|+... .+||+|+.||+++|||++ .|+++.
T Consensus 270 ----~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s-DVNVISWnr~~---~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 270 ----DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS-DVNVISWNRRE---PLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred ----CceEEeeecCceEEEEEecCCCccceeEeeccCC-ceeeEEccCCc---ceeeecCCCceEEEEEhhhccCCCcce
Confidence 4689999999999999999984333322367766 89999998765 499999999999999987 567888
Q ss_pred EEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 174 ~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
.+++|..+|+|+.|+|.+...|+++|.|..|.+||++-
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99999999999999999999999999999999999865
No 161
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=3.8e-14 Score=164.57 Aligned_cols=332 Identities=17% Similarity=0.163 Sum_probs=210.4
Q ss_pred EeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCe
Q 000707 58 STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGI 137 (1341)
Q Consensus 58 ~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V 137 (1341)
..+.||++ .|.++.-.| .|.+||||+.||+|+||.+.||+++..+.+.+ .|
T Consensus 394 lvyrGHtg-----------~Vr~iSvdp--------------~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~----~I 444 (733)
T KOG0650|consen 394 LVYRGHTG-----------LVRSISVDP--------------SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS----EI 444 (733)
T ss_pred eeEeccCC-----------eEEEEEecC--------------CcceeeecCCCCcEEEEEeecceEEEEEeecc----ee
Confidence 45789998 899998775 47899999999999999999999999886643 79
Q ss_pred eEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccce
Q 000707 138 QDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEV 217 (1341)
Q Consensus 138 ~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~ 217 (1341)
.+++|.|..+- -+||++-+.. +.|-|..=|+.+..... .+.+... |.. ...++.+..|.-..
T Consensus 445 ~~vaw~P~~~~-~vLAvA~~~~-~~ivnp~~G~~~e~~~t-~ell~~~---~~~------~~p~~~~~~W~~~~------ 506 (733)
T KOG0650|consen 445 RSVAWNPLSDL-CVLAVAVGEC-VLIVNPIFGDRLEVGPT-KELLASA---PNE------SEPDAAVVTWSRAS------ 506 (733)
T ss_pred EEEEecCCCCc-eeEEEEecCc-eEEeCccccchhhhcch-hhhhhcC---CCc------cCCcccceeechhh------
Confidence 99999998743 5777666555 66667665654422111 1111111 000 01234555553111
Q ss_pred eeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC---CeEEEEEcCCCceeEEEecC
Q 000707 218 VVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP---RELVVFDLQYETPLFSAALP 294 (1341)
Q Consensus 218 ~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d---~~I~iwDl~t~~~l~~~~l~ 294 (1341)
..++++..-. .-.++..|.++.++..|..++++..+ +.|.|.+|..+.... ++.
T Consensus 507 -------------~~e~~~~v~~--------~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~--PF~ 563 (733)
T KOG0650|consen 507 -------------LDELEKGVCI--------VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQS--PFR 563 (733)
T ss_pred -------------hhhhccceEE--------EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccC--chh
Confidence 0011100000 00123347789999999999999854 679999998766543 333
Q ss_pred CCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhccc
Q 000707 295 RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCL 374 (1341)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~ 374 (1341)
...+.++.+.|-|-..+|+.+.. ..|||+|....+.+..+ ++ |. -.|..++
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL------~t--g~----kwiS~ms---------------- 614 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKL------LT--GS----KWISSMS---------------- 614 (733)
T ss_pred hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHH------hc--CC----eeeeeee----------------
Confidence 34456778888888887776654 57999998655433322 11 00 0111111
Q ss_pred CCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcC
Q 000707 375 DAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMAS 454 (1341)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~ 454 (1341)
+.++|..|+.++.|+++..+|+.-... + .
T Consensus 615 ----------------------ihp~GDnli~gs~d~k~~WfDldlssk------------------------P-y---- 643 (733)
T KOG0650|consen 615 ----------------------IHPNGDNLILGSYDKKMCWFDLDLSSK------------------------P-Y---- 643 (733)
T ss_pred ----------------------ecCCCCeEEEecCCCeeEEEEcccCcc------------------------h-h----
Confidence 123377999999999999998753311 0 0
Q ss_pred cccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEE
Q 000707 455 SADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVAL 534 (1341)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAs 534 (1341)
+ .|.-|...+++|+|++ .-+++|+
T Consensus 644 ----------k------------------------------~lr~H~~avr~Va~H~----------------ryPLfas 667 (733)
T KOG0650|consen 644 ----------K------------------------------TLRLHEKAVRSVAFHK----------------RYPLFAS 667 (733)
T ss_pred ----------H------------------------------Hhhhhhhhhhhhhhcc----------------ccceeee
Confidence 0 1122678889999998 4689999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCC-
Q 000707 535 GTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPER- 613 (1341)
Q Consensus 535 Gs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~- 613 (1341)
|+.||++.|+--. |.. .+.. +....++..+++ |.
T Consensus 668 ~sdDgtv~Vfhg~--------------VY~-Dl~q-----------------------------npliVPlK~L~g-H~~ 702 (733)
T KOG0650|consen 668 GSDDGTVIVFHGM--------------VYN-DLLQ-----------------------------NPLIVPLKRLRG-HEK 702 (733)
T ss_pred ecCCCcEEEEeee--------------eeh-hhhc-----------------------------CCceEeeeeccC-cee
Confidence 9999999998531 100 0000 111123444444 33
Q ss_pred ---CCeEEEEECCCCCEEEEEECCCcEEEE
Q 000707 614 ---APIRALRASSSGRYLLILFRDAPVEVW 640 (1341)
Q Consensus 614 ---~~I~~i~~SpdG~~Las~s~D~~I~vW 640 (1341)
-.|..+.|+|..-+|.+++.|++|++|
T Consensus 703 ~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 703 TNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccceEeecccCCCceEEecCCCceEEee
Confidence 247788899999999999999999998
No 162
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.2e-13 Score=167.86 Aligned_cols=261 Identities=14% Similarity=0.210 Sum_probs=192.5
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC-cEEEEEeecCCCeEEEEEcCCCcEEEEe
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg-~~~~~l~~H~~~V~~l~fs~d~~llS~s 577 (1341)
+|..+-|.|.+.| +|..|.+.+.||.|++|+..+. .....+..|...|.+++-..+ .+++++
T Consensus 11 aht~G~t~i~~d~----------------~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~s 73 (933)
T KOG1274|consen 11 AHTGGLTLICYDP----------------DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTGS 73 (933)
T ss_pred hccCceEEEEEcC----------------CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEee
Confidence 4777889999988 5789999999999999997655 344455557788888876554 666443
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCcee---eeccC
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIML---RSLAL 654 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l---~~l~~ 654 (1341)
.+++|.++.+.+|+...+-. .-+-|++.++|+-+|+++|.|+.|-.|++-++ ...... +.+..
T Consensus 74 ----------~~~tv~~y~fps~~~~~iL~---Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~-~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 74 ----------EQNTVLRYKFPSGEEDTILA---RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNL-DDSSQEKVLRGHDA 139 (933)
T ss_pred ----------ccceEEEeeCCCCCccceee---eeeccceEEEEecCCcEEEeecCceeEEEEec-cccchheeecccCC
Confidence 45799999998876432211 14568999999999999999999999999998 454433 33445
Q ss_pred ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe
Q 000707 655 PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV 734 (1341)
Q Consensus 655 ~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv 734 (1341)
+|.++.++|. ++.||+.+.||.|++|++
T Consensus 140 pVl~l~~~p~----------------------------------------------------~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 140 PVLQLSYDPK----------------------------------------------------GNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ceeeeeEcCC----------------------------------------------------CCEEEEEecCceEEEEEc
Confidence 7777777643 578999999999999999
Q ss_pred cCCeeec-ccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeee--ccCCCcEEEEEEccCCCC
Q 000707 735 HGRRIRD-FRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQF--STHREGIRRIKFSPVVPG 808 (1341)
Q Consensus 735 ~~~~v~~-~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l--~gH~~~V~~V~fSP~~~g 808 (1341)
+.+.+.. +....+...+. ....++.++| +|-.++.-..|+.|++++..++. ...+ .-|...+..+.|||. |
T Consensus 168 ~~~~~~~tl~~v~k~n~~~-~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn--G 244 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFI-LSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN--G 244 (933)
T ss_pred ccchhhhhcccCCcccccc-ccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC--C
Confidence 7654421 11111222221 1234677889 77788888899999999999876 3333 344555999999999 6
Q ss_pred CCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCC
Q 000707 809 DRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 809 d~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~ 857 (1341)
+|||+++.||.|-|||+++-+. |.....|..++|.|.
T Consensus 245 ----~YiAAs~~~g~I~vWnv~t~~~--------~~~~~~Vc~~aw~p~ 281 (933)
T KOG1274|consen 245 ----KYIAASTLDGQILVWNVDTHER--------HEFKRAVCCEAWKPN 281 (933)
T ss_pred ----cEEeeeccCCcEEEEecccchh--------ccccceeEEEecCCC
Confidence 8999999999999999998441 333457899999887
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-15 Score=186.48 Aligned_cols=253 Identities=18% Similarity=0.206 Sum_probs=191.6
Q ss_pred cCCCCCCC-CCCceEeCCC-----CeEEEEc-CCeEEEEeCCCc------ceeEeecCCCCCCCCCCCCCCCcEEEEEEc
Q 000707 18 LPGPPSRN-NFGSADLSPS-----GLLAFAS-GSSISILDSRSL------QLISTIPIPPPTSAGSVASLSPFVTAVKWI 84 (1341)
Q Consensus 18 lpg~~~~~-~~~a~~~s~~-----gllA~gs-~~~V~v~d~~~~------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s 84 (1341)
.-|+...+ .++.++|++. |+||.|. ++.|.+||+... .++.++..|++ .|..+.|.
T Consensus 57 ~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-----------~V~gLDfN 125 (1049)
T KOG0307|consen 57 PVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-----------PVLGLDFN 125 (1049)
T ss_pred ccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-----------ceeeeecc
Confidence 33444333 3678999864 4688876 579999998762 34678889999 99999999
Q ss_pred cCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE
Q 000707 85 PITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1341)
Q Consensus 85 p~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1341)
|.. +.+||||+.||.|.|||+..-+....+....-.. .|.+|+|...- .++||+++.++++.||
T Consensus 126 ~~q-------------~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~-eI~~lsWNrkv--qhILAS~s~sg~~~iW 189 (1049)
T KOG0307|consen 126 PFQ-------------GNLLASGADDGEILIWDLNKPETPFTPGSQAPPS-EIKCLSWNRKV--SHILASGSPSGRAVIW 189 (1049)
T ss_pred ccC-------------CceeeccCCCCcEEEeccCCcCCCCCCCCCCCcc-cceEeccchhh--hHHhhccCCCCCceec
Confidence 874 6799999999999999997755433321111223 68999998754 4899999999999999
Q ss_pred ECCCCeEEEEEeCCCC--ceEEEEEcCCCCCEEEEEeCC---CeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 165 NTTSASCMWKYDASPE--YLSCIRRNPFDARHFCVLGLK---GLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 165 d~~tg~~i~~~~~~~~--~v~~~~fsP~d~~~la~~~~d---G~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
|++..+++-++..+.. .++.++|+|.+..++++++.| -.|.+||++-.. ..++.++
T Consensus 190 Dlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---------------sP~k~~~---- 250 (1049)
T KOG0307|consen 190 DLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---------------SPLKILE---- 250 (1049)
T ss_pred cccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---------------Cchhhhc----
Confidence 9998888877765433 477999999989999998765 378888864310 0111121
Q ss_pred cccCCCCCCCCcCccceEEEEEccCC-CceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCC-EEEEEec
Q 000707 240 AGAASLSPASGLFPLYMVKFTFSPHW-RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHL 317 (1341)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~afSpdg-~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~ 317 (1341)
+|...++++.+++.+ +.+++.+-|+.|.+|+.++|+.+..++ .+......|-+||... .+++++-
T Consensus 251 -----------~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--~~~nW~fdv~w~pr~P~~~A~asf 317 (1049)
T KOG0307|consen 251 -----------GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--AQGNWCFDVQWCPRNPSVMAAASF 317 (1049)
T ss_pred -----------ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--CCCcceeeeeecCCCcchhhhhee
Confidence 233358899999887 778888899999999999999998776 3456788899998554 8999999
Q ss_pred CCcEEEEeccCC
Q 000707 318 DGKLSIWRRKEG 329 (1341)
Q Consensus 318 DgtI~lW~~~~g 329 (1341)
||+|.|..+..+
T Consensus 318 dgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 318 DGKISIYSLQGT 329 (1049)
T ss_pred ccceeeeeeecC
Confidence 999999988643
No 164
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.61 E-value=3.9e-14 Score=160.97 Aligned_cols=250 Identities=14% Similarity=0.137 Sum_probs=186.8
Q ss_pred eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCC------------C--------
Q 000707 37 LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST------------E-------- 96 (1341)
Q Consensus 37 llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~------------~-------- 96 (1341)
|.+..++..|+|||.........+..|++ .+-|.++.|+..... ...|. .
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~---------~pg~~s~~w~~~n~l-vvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTA---------EPGDFSFNWQRRNFL-VVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCC---------CCcceeeeccccceE-EEeecCCceeEEEecccCCCCcccee
Confidence 55555667899999998877766666665 236888888876531 11110 0
Q ss_pred ------------CCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE
Q 000707 97 ------------PGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1341)
Q Consensus 97 ------------~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1341)
-.....+++||+..|.|+|||++...+.+. +.+|+. .|+++.+...+ .+||+++..|.|.|-
T Consensus 75 ~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~--lkdh~s-tvt~v~YN~~D---eyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRF--LKDHQS-TVTYVDYNNTD---EYIASVSDGGDIIIH 148 (673)
T ss_pred eccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhh--ccCCcc-eeEEEEecCCc---ceeEEeccCCcEEEE
Confidence 023458899999999999999985445444 588987 99999998765 899999999999999
Q ss_pred ECCCCeEEEEEeCC-CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000707 165 NTTSASCMWKYDAS-PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1341)
Q Consensus 165 d~~tg~~i~~~~~~-~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1341)
++.|+..-..+... .+.+.-+.|+|+....|.+++.+|.|.+||+.+..+.-. |.
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--------------------~~---- 204 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--------------------AS---- 204 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc--------------------hh----
Confidence 99988776666554 346668999999989999999999999999988544211 11
Q ss_pred CCCCCCCcCccceEEEEEccCCC-ceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEE
Q 000707 244 SLSPASGLFPLYMVKFTFSPHWR-HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLS 322 (1341)
Q Consensus 244 ~~~p~~~~~~~~v~~~afSpdg~-~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~ 322 (1341)
..|..-+..+||||... -++++++|..|.+||.........+... .|+..|+|.++|-+|+.|...|.|.
T Consensus 205 ------~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i 275 (673)
T KOG4378|consen 205 ------EAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELI 275 (673)
T ss_pred ------hhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEE
Confidence 01111255679999875 5567789999999999977665555433 5788999999999999999999999
Q ss_pred EEeccCC-ceeeee
Q 000707 323 IWRRKEG-EQVHVM 335 (1341)
Q Consensus 323 lW~~~~g-~~~~~~ 335 (1341)
.+|++.. ..+.++
T Consensus 276 ~YD~R~~k~Pv~v~ 289 (673)
T KOG4378|consen 276 AYDMRSTKAPVAVR 289 (673)
T ss_pred EEecccCCCCceEe
Confidence 9998743 344444
No 165
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.60 E-value=8.4e-14 Score=157.95 Aligned_cols=286 Identities=16% Similarity=0.184 Sum_probs=192.9
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc----EEEEEeecCCCeEEEEEcCCC--cE
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA----VTASFSVHNGTVRGLRWLGNS--RL 573 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~----~~~~l~~H~~~V~~l~fs~d~--~l 573 (1341)
+..+|++++|+|. ...++||+|..-|+|-+||+.+.. -...+..|+.+|.+|.|+|.+ ++
T Consensus 185 ~~~Rit~l~fHPt--------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFHPT--------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccceEEEEeccc--------------CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 5789999999993 135799999999999999995322 345678999999999999854 78
Q ss_pred EEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc----ee
Q 000707 574 VSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI----ML 649 (1341)
Q Consensus 574 lS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~----~l 649 (1341)
++.|+| ++|++-|++++....+-.+. .+...+..+.|+.+.+-++.+..=|.+.+||+ +++. .+
T Consensus 251 ~ssSyD----------GtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~-R~~~s~~~~~ 318 (498)
T KOG4328|consen 251 YSSSYD----------GTIRLQDFEGNISEEVLSLD-TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL-RTDGSEYENL 318 (498)
T ss_pred eeeccC----------ceeeeeeecchhhHHHhhcC-ccceeeeeccccCCCccEEEeecccceEEEEe-ecCCccchhh
Confidence 877665 59999999887643333322 24556788899988887777766668999999 5532 22
Q ss_pred eeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcE
Q 000707 650 RSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGAL 729 (1341)
Q Consensus 650 ~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I 729 (1341)
+..+..|+++++.|- ....+|+++.|++.
T Consensus 319 ~lh~kKI~sv~~NP~---------------------------------------------------~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 319 RLHKKKITSVALNPV---------------------------------------------------CPWFLATASLDQTA 347 (498)
T ss_pred hhhhcccceeecCCC---------------------------------------------------CchheeecccCcce
Confidence 323345666766643 13568999999999
Q ss_pred EEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECC---CC-c-eeee---ccCCCcEE-
Q 000707 730 GVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVT---TG-H-SSQF---STHREGIR- 798 (1341)
Q Consensus 730 ~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~---tg-~-~~~l---~gH~~~V~- 798 (1341)
+|||++.-.-+. . |--+...|...|.+..| .|-.|++-+.|.+|||||.. .. . ..++ ..|..+++
T Consensus 348 kIWD~R~l~~K~---s-p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~ 423 (498)
T KOG4328|consen 348 KIWDLRQLRGKA---S-PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTP 423 (498)
T ss_pred eeeehhhhcCCC---C-cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccc
Confidence 999985322111 0 10112357778888777 44449999999999999984 11 1 1122 22233443
Q ss_pred -EEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCC-CcEEE-EEEcCCCCCCCCCeEEEEEECCCc
Q 000707 799 -RIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPG-TLVLE-LDWLPTRTDKNDPLVLCIAGADSS 875 (1341)
Q Consensus 799 -~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~-~~V~~-l~ws~~~~~~g~~~~Las~s~Dgt 875 (1341)
..+|.|+ . ..|+++-.-..|.|+|-..++ +...+ |.+. ..|.+ ..|+|. +.. +++.++.-|.
T Consensus 424 fKA~W~P~--~----~li~vg~~~r~IDv~~~~~~q-~v~el---~~P~~~tI~~vn~~HP~----~~~-~~aG~~s~Gk 488 (498)
T KOG4328|consen 424 FKAAWDPD--Y----NLIVVGRYPRPIDVFDGNGGQ-MVCEL---HDPESSTIPSVNEFHPM----RDT-LAAGGNSSGK 488 (498)
T ss_pred hhheeCCC--c----cEEEEeccCcceeEEcCCCCE-Eeeec---cCccccccccceeeccc----ccc-eeccCCccce
Confidence 3469998 3 578888888889999988776 32222 2211 12332 579997 342 3555566777
Q ss_pred EEEEEc
Q 000707 876 FRLIEV 881 (1341)
Q Consensus 876 IrvWdv 881 (1341)
|.||.-
T Consensus 489 i~vft~ 494 (498)
T KOG4328|consen 489 IYVFTN 494 (498)
T ss_pred EEEEec
Confidence 777753
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.60 E-value=8.9e-14 Score=158.09 Aligned_cols=298 Identities=13% Similarity=0.127 Sum_probs=199.0
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC--CCeE-EEEEeCCC
Q 000707 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT--SASC-MWKYDASP 179 (1341)
Q Consensus 103 ~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~--tg~~-i~~~~~~~ 179 (1341)
++||++ .+|+|||+..-+....+...-... +|..++|..... -.+|+.++|..+++|.-. +|+. +..+.. .
T Consensus 6 ~~aS~g--d~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~--lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~-g 79 (673)
T KOG4378|consen 6 HVASTG--DKTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNF--LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT-G 79 (673)
T ss_pred eeeccC--CceEEeecccccCccccccCCCCC-cceeeeccccce--EEEeecCCceeEEEecccCCCCccceeeccc-c
Confidence 455554 469999997765544442222223 689999987531 234455788999999643 3332 222222 2
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 180 EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 180 ~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
+.-.|++... -+..++++|..|+|.+||+..+- +.+- ...+...|..|
T Consensus 80 d~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl--------------------~hr~-----------lkdh~stvt~v 127 (673)
T KOG4378|consen 80 DNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKL--------------------IHRF-----------LKDHQSTVTYV 127 (673)
T ss_pred chHHHHhhhh-cceeeeccCcCceeeehhhHHHH--------------------Hhhh-----------ccCCcceeEEE
Confidence 3555666665 34889999999999999985321 1110 01123457888
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCC-EEEEEecCCcEEEEeccCCceeeeeecc
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRKEGEQVHVMCTM 338 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~~g~~~~~~~~~ 338 (1341)
.|.-...+|++++..|+|.|..+++++.-..+..+.+. .+.-+-++|-.+ .|.+++.||.|.|||+..-...+.+...
T Consensus 128 ~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq-svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~ 206 (673)
T KOG4378|consen 128 DYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ-SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEA 206 (673)
T ss_pred EecCCcceeEEeccCCcEEEEecccCccccceecCCCC-eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhh
Confidence 99988899999999999999999999887777655332 233344566444 7888999999999998743322222100
Q ss_pred cccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEc
Q 000707 339 EELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLL 418 (1341)
Q Consensus 339 ~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl 418 (1341)
+. .| .-+++.+|.+| ..|++++-|.+|.+||.
T Consensus 207 Hs-------------------AP---------------------------~~gicfspsne--~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 207 HS-------------------AP---------------------------CRGICFSPSNE--ALLVSVGYDKKINIYDI 238 (673)
T ss_pred cc-------------------CC---------------------------cCcceecCCcc--ceEEEecccceEEEeec
Confidence 00 01 12334455554 49999999999999998
Q ss_pred cccccccccccccccCCCcccccccccCcccccCcCcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeecc
Q 000707 419 TAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQ 498 (1341)
Q Consensus 419 ~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~ 498 (1341)
.+.+.... ++
T Consensus 239 ~s~~s~~~------------------------------------------------------------------l~---- 248 (673)
T KOG4378|consen 239 RSQASTDR------------------------------------------------------------------LT---- 248 (673)
T ss_pred ccccccce------------------------------------------------------------------ee----
Confidence 64321110 00
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCC-CcEEEEEeecCCCeEEEEEcCCCcEE
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSA-NAVTASFSVHNGTVRGLRWLGNSRLV 574 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~t-g~~~~~l~~H~~~V~~l~fs~d~~ll 574 (1341)
...|.++|+|.+ .|.+|+.|+..|.|..||+.. ...++.+.+|...|++|+|-+.-.++
T Consensus 249 -y~~Plstvaf~~----------------~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~tvl 308 (673)
T KOG4378|consen 249 -YSHPLSTVAFSE----------------CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPTVL 308 (673)
T ss_pred -ecCCcceeeecC----------------CceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecceee
Confidence 145678899988 689999999999999999964 45788999999999999996654333
No 167
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=5.1e-14 Score=157.81 Aligned_cols=270 Identities=19% Similarity=0.186 Sum_probs=180.3
Q ss_pred CCCCceEeCCCC--eEEEE-cCCeEEEEeCCCc---------ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 25 NNFGSADLSPSG--LLAFA-SGSSISILDSRSL---------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 25 ~~~~a~~~s~~g--llA~g-s~~~V~v~d~~~~---------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
..+..+++.++. .+|+| .+..|+||-.... ..+.+|..|.. .|++|+|+|+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~-----------aVN~vRf~p~------ 76 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTR-----------AVNVVRFSPD------ 76 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcc-----------eeEEEEEcCC------
Confidence 457789998874 68886 4679999986542 23568999998 9999999986
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCC--------C-----C-eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCC
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDFR--------L-----R-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP 158 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv~--------t-----g-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d 158 (1341)
|.+||||+++|+|.+|-.. + . ..+....+.+|.+ .|.+++|+|++ .++++++-|
T Consensus 77 --------gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~-diydL~Ws~d~---~~l~s~s~d 144 (434)
T KOG1009|consen 77 --------GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRD-DIYDLAWSPDS---NFLVSGSVD 144 (434)
T ss_pred --------cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEeccccc-chhhhhccCCC---ceeeeeecc
Confidence 5789999999999999865 2 1 1222222567888 99999999987 899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcc-c----ce---------eeeeEEE
Q 000707 159 SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKE-D----EV---------VVKELQI 224 (1341)
Q Consensus 159 ~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~-~----~~---------~~k~~~i 224 (1341)
+++++||+..|..+..+..|...+..++|+| -...+++-+.|...+.+...-..- . ++ ..+.+..
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL 223 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL 223 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecch-hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee
Confidence 9999999999999988988888999999999 567777776665333322111000 0 00 0011111
Q ss_pred ecCcc---hhhhhhhhhccccCCC----------------------------CCC----CCcCccceEEEEEcc------
Q 000707 225 QTDCT---ELLKLERELSAGAASL----------------------------SPA----SGLFPLYMVKFTFSP------ 263 (1341)
Q Consensus 225 ~~~~~---~l~~l~~~~~~~s~~~----------------------------~p~----~~~~~~~v~~~afSp------ 263 (1341)
.++.+ -+.|+. ++. .|.. +|+ .... ..+.+.|+|
T Consensus 224 fhDeTlksFFrRls--fTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k--~~lavr~~pVy~elr 298 (434)
T KOG1009|consen 224 FHDETLKSFFRRLS--FTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK--PALAVRFSPVYYELR 298 (434)
T ss_pred eecCchhhhhhhcc--cCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc--ceEEEEeeeeEEEec
Confidence 11110 001110 000 0000 110 0011 122334443
Q ss_pred -----------CCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 264 -----------HWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 264 -----------dg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
-.|.+...+..+.|.|||.++-.++..+.- =+..++.++++++||.+|+..|.||-.++--....+
T Consensus 299 p~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 299 PLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred cccccccccccccceEEEEeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 124556667788999999999888765532 246788999999999999999999998877665444
No 168
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=1.1e-13 Score=156.61 Aligned_cols=194 Identities=13% Similarity=0.204 Sum_probs=151.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCe---EEEEe----------------cCCCCCCCCeeEEEEeecCCCccEEEEEeCC
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRS---VVLWI----------------DPDPNPKLGIQDLCWIVSKPDSFVLAAINGP 158 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~---~~~~l----------------~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d 158 (1341)
...|.++|.|..|-.|.|||+.-.. +...| .-.+|+. .|.+|+|.... ..+|||++.|
T Consensus 189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n~~~--~nVLaSgsaD 265 (463)
T KOG0270|consen 189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWNRNF--RNVLASGSAD 265 (463)
T ss_pred CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhcccc--ceeEEecCCC
Confidence 3568999999999999999974211 11111 1236777 78899998765 3899999999
Q ss_pred CeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhh
Q 000707 159 SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLEREL 238 (1341)
Q Consensus 159 ~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~ 238 (1341)
.+|++||+.+|+|...+..|.+.|.++.|.|+.+..|.+|+.|+++.+.|.+. + +...+.|.+
T Consensus 266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~--~-~~s~~~wk~-------------- 328 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD--P-SNSGKEWKF-------------- 328 (463)
T ss_pred ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC--c-cccCceEEe--------------
Confidence 99999999999999999988899999999999999999999999999998763 1 122444432
Q ss_pred ccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCC-ceeEEEecCCCccceEEEEEcCC-CCEEEEE
Q 000707 239 SAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYE-TPLFSAALPRGCAKFLDVLADPN-NDLLYCA 315 (1341)
Q Consensus 239 ~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~-~~l~~~~l~~~~~~~~~v~~~pd-g~~L~s~ 315 (1341)
-+.+-.+++.|...+.+.++ .||+|+-+|+... +++.++..| ..++..+...+. -.+|+++
T Consensus 329 --------------~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH--d~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 329 --------------DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH--DDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred --------------ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEec--cCCcceEEecCCCCcceeec
Confidence 12466778888887777776 6799999999864 778777655 356666666554 3489999
Q ss_pred ecCCcEEEEecc
Q 000707 316 HLDGKLSIWRRK 327 (1341)
Q Consensus 316 ~~DgtI~lW~~~ 327 (1341)
+.|++|++|+..
T Consensus 393 s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 393 STDKVVKLWKFD 404 (463)
T ss_pred cccceEEEEeec
Confidence 999999999975
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.5e-13 Score=149.47 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=146.8
Q ss_pred eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEE
Q 000707 37 LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115 (1341)
Q Consensus 37 llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~v 115 (1341)
.+|.+ +.++|+++|..+++.+..+++|++ .++.|+|+.... +..+.||+.||+|++
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~-----------~~N~vrf~~~ds------------~h~v~s~ssDG~Vr~ 98 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-----------TTNGVRFISCDS------------PHGVISCSSDGTVRL 98 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCC-----------cccceEEecCCC------------CCeeEEeccCCeEEE
Confidence 46655 668999999999999999999998 899999987532 345899999999999
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe----CCCeEEEEECCCCeE-EEEE-eCCCCceEEEEEcC
Q 000707 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN----GPSVLSLYNTTSASC-MWKY-DASPEYLSCIRRNP 189 (1341)
Q Consensus 116 WDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s----~d~~i~lWd~~tg~~-i~~~-~~~~~~v~~~~fsP 189 (1341)
||+++......+....+++.+-.+++-.-.+ ++++.+. .+-.|.+||++.-.. +..+ +.|.+.|++++|.|
T Consensus 99 wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~---~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 99 WDIRSQAESARISWTQQSGTPFICLDLNCKK---NIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred EEeecchhhhheeccCCCCCcceEeeccCcC---CeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 9999887666655555553233433332222 6888774 467899999986655 4433 55789999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC-Cce
Q 000707 190 FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW-RHI 268 (1341)
Q Consensus 190 ~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg-~~l 268 (1341)
.|+..|++++.||.|.++|+..+.+.+ .|...+.. ...|-.+.|+.++ +.|
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d~EeD----------------aL~~viN~------------~sSI~~igw~~~~ykrI 227 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKDNEED----------------ALLHVINH------------GSSIHLIGWLSKKYKRI 227 (376)
T ss_pred CCCCeEEeecccceEEeeecCCCcchh----------------hHHHhhcc------------cceeeeeeeecCCcceE
Confidence 999999999999999999975532211 12222111 1135667898776 457
Q ss_pred EEEEcCCeEEEEEcCCCceeE
Q 000707 269 IFVTFPRELVVFDLQYETPLF 289 (1341)
Q Consensus 269 ~~~~~d~~I~iwDl~t~~~l~ 289 (1341)
...+...+..+|+++.+....
T Consensus 228 ~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 228 MCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred EEEEccCceeEEEccCCChhh
Confidence 778889999999999987543
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.55 E-value=2.2e-13 Score=148.46 Aligned_cols=255 Identities=16% Similarity=0.200 Sum_probs=168.8
Q ss_pred CceEeCCCC--eEEEEcCCeEEEEeCCCc-------ceeEeecCCCCCCCCCCCC-CCCcEEEEEEccCCCccccCCCCC
Q 000707 28 GSADLSPSG--LLAFASGSSISILDSRSL-------QLISTIPIPPPTSAGSVAS-LSPFVTAVKWIPITLRCDLLSTEP 97 (1341)
Q Consensus 28 ~a~~~s~~g--llA~gs~~~V~v~d~~~~-------~~~~~l~~H~~~~~~~~~~-~~~~Vt~v~~sp~~~~~~~~s~~~ 97 (1341)
..+-||||| +|+-..++...+|+...- +.+ -++.|.. +.+ ....|..-.|-|.= .+.
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~~~~-----~r~~eg~tvydy~wYs~M-------~s~ 119 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSKHLS-----YRYQEGETVYDYCWYSRM-------KSD 119 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCcc-cccccee-----EEeccCCEEEEEEeeecc-------ccC
Confidence 468999999 666667899999986431 111 1112211 000 01256666665421 123
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC--CCeeEEEEeecCCCccEEEEEeCCCeEEEEEC-CCCeEE--
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK--LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT-TSASCM-- 172 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~--~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~-~tg~~i-- 172 (1341)
.|+..+.|+.+++.-|.+||.-+|+....+.--.|.. ..-.+|+|+||| ..|.++. .+.|+++|+ +.|+..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---eqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---EQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---CeEeecc-cceEEEeeccCCCCCCcc
Confidence 5788899999999999999999999887764333433 023679999998 5666554 789999999 566521
Q ss_pred EE-----EeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCC
Q 000707 173 WK-----YDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSP 247 (1341)
Q Consensus 173 ~~-----~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p 247 (1341)
.. ..+..+.+.|++|+|.++..+++++-...+=++.-.+ ...+..+
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~----------------~~pl~ll------------- 246 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG----------------RRPLQLL------------- 246 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC----------------CCceeee-------------
Confidence 11 1122567889999999999999887544433332111 1111212
Q ss_pred CCCcCccceEEEEEccCCCceEEEEc-CCeEEEEEcCCC-ceeEEEecCCCcc-ceEEEEE--cCCCCEEEEEecCCcEE
Q 000707 248 ASGLFPLYMVKFTFSPHWRHIIFVTF-PRELVVFDLQYE-TPLFSAALPRGCA-KFLDVLA--DPNNDLLYCAHLDGKLS 322 (1341)
Q Consensus 248 ~~~~~~~~v~~~afSpdg~~l~~~~~-d~~I~iwDl~t~-~~l~~~~l~~~~~-~~~~v~~--~pdg~~L~s~~~DgtI~ 322 (1341)
.++.+.|..++|.+||..+.+++. |-+|..||+... ..+ ..+.|+.. .-..+.| .|+|++|++|+.||.|+
T Consensus 247 --ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~ 322 (406)
T KOG2919|consen 247 --GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV--YALERHVGDTNQRILFDLDPKGEILASGDTDGSVR 322 (406)
T ss_pred --cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh--hhhhhhccCccceEEEecCCCCceeeccCCCccEE
Confidence 224456889999999999888884 789999999854 444 34445443 3445666 48999999999999999
Q ss_pred EEeccC-Ccee
Q 000707 323 IWRRKE-GEQV 332 (1341)
Q Consensus 323 lW~~~~-g~~~ 332 (1341)
+||.++ |+.+
T Consensus 323 vwdlk~~gn~~ 333 (406)
T KOG2919|consen 323 VWDLKDLGNEV 333 (406)
T ss_pred EEecCCCCCcc
Confidence 999986 5533
No 171
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=4.4e-13 Score=152.22 Aligned_cols=248 Identities=14% Similarity=0.145 Sum_probs=178.3
Q ss_pred CCceEeCCCC---eEEEEc-CCeEEEEeCCCcc----eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 27 FGSADLSPSG---LLAFAS-GSSISILDSRSLQ----LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 27 ~~a~~~s~~g---llA~gs-~~~V~v~d~~~~~----~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
+.+++|+|.- ++|.|. .+.|-+||....+ .+..+..|.+ .|+++.|+|.+
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-----------~Vs~l~F~P~n----------- 246 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-----------PVSGLKFSPAN----------- 246 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-----------cccceEecCCC-----------
Confidence 5789999963 888886 4799999995322 3566788988 89999999964
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE-EEEEeC
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYDA 177 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~~ 177 (1341)
...+.|.+.||+|++=|+..+..-..+.+..... ...++.|+.+. ..++.+..=|.+.+||.+++.. .+.+..
T Consensus 247 --~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~-~fs~~d~~~e~---~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 247 --TSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNI-WFSSLDFSAES---RSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred --hhheeeeccCceeeeeeecchhhHHHhhcCccce-eeeeccccCCC---ccEEEeecccceEEEEeecCCccchhhhh
Confidence 4578899999999999998764332222222223 56777887765 4444555445899999997765 666777
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceE
Q 000707 178 SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMV 257 (1341)
Q Consensus 178 ~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~ 257 (1341)
|...|..++++|-.+..|+++|.|++.++||+..-.. |. ++.+. ...|...|.
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~-----K~------sp~ls----------------t~~HrrsV~ 373 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRG-----KA------SPFLS----------------TLPHRRSVN 373 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcC-----CC------Cccee----------------cccccceee
Confidence 7779999999999999999999999999999754111 00 00000 112334577
Q ss_pred EEEEccCCCceEEEEcCCeEEEEEcC----CCceeEEEecC----CCccceEEEEEcCCCCEEEEEecCCcEEEEeccCC
Q 000707 258 KFTFSPHWRHIIFVTFPRELVVFDLQ----YETPLFSAALP----RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1341)
Q Consensus 258 ~~afSpdg~~l~~~~~d~~I~iwDl~----t~~~l~~~~l~----~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1341)
++.|||++-+|++.+.|.+|+|||.. .-+.+.++... |.-.+| .-++.||-.+++.|-.-..|-+.|-..|
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~f-KA~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPF-KAAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccch-hheeCCCccEEEEeccCcceeEEcCCCC
Confidence 88999999999999999999999994 33444555432 112233 3456788899999988888988887765
Q ss_pred c
Q 000707 330 E 330 (1341)
Q Consensus 330 ~ 330 (1341)
.
T Consensus 453 q 453 (498)
T KOG4328|consen 453 Q 453 (498)
T ss_pred E
Confidence 4
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.53 E-value=1.2e-12 Score=147.04 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=105.0
Q ss_pred eeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEEee
Q 000707 494 DGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS--------A--------NAVTASFSV 557 (1341)
Q Consensus 494 ~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~--------t--------g~~~~~l~~ 557 (1341)
.+.|..|...|++++|+| .|.+||+|+++|.|.+|-.. + -.+.+.+.+
T Consensus 58 ~s~Ls~H~~aVN~vRf~p----------------~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~ 121 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSP----------------DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG 121 (434)
T ss_pred eecccCCcceeEEEEEcC----------------CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc
Confidence 345667999999999998 58999999999999999876 3 235677889
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcE
Q 000707 558 HNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPV 637 (1341)
Q Consensus 558 H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I 637 (1341)
|...|..++|++++.++. +|..||.+++||+..|. .+..+.+ |...+..++|.|-++|+++-+.|+..
T Consensus 122 h~~diydL~Ws~d~~~l~---------s~s~dns~~l~Dv~~G~--l~~~~~d-h~~yvqgvawDpl~qyv~s~s~dr~~ 189 (434)
T KOG1009|consen 122 HRDDIYDLAWSPDSNFLV---------SGSVDNSVRLWDVHAGQ--LLAILDD-HEHYVQGVAWDPLNQYVASKSSDRHP 189 (434)
T ss_pred cccchhhhhccCCCceee---------eeeccceEEEEEeccce--eEeeccc-cccccceeecchhhhhhhhhccCccc
Confidence 999999999999998774 34567899999999998 4444444 88899999999999999999999988
Q ss_pred EEEeccCCCceee
Q 000707 638 EVWAMTKNPIMLR 650 (1341)
Q Consensus 638 ~vWDl~~t~~~l~ 650 (1341)
++.++ +..++++
T Consensus 190 ~~~~~-~~~~~~~ 201 (434)
T KOG1009|consen 190 EGFSA-KLKQVIK 201 (434)
T ss_pred ceeee-eeeeeee
Confidence 88877 4444443
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.51 E-value=2.2e-13 Score=151.89 Aligned_cols=210 Identities=14% Similarity=0.220 Sum_probs=156.2
Q ss_pred eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEe-----cCCCCC
Q 000707 59 TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWI-----DPDPNP 133 (1341)
Q Consensus 59 ~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l-----~~~~h~ 133 (1341)
...||++ .|--++|+|.+ ...||||+.|.+|.||++-.+...+.+ .+.||+
T Consensus 76 ~v~GHt~-----------~vLDi~w~Pfn-------------D~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~ 131 (472)
T KOG0303|consen 76 LVCGHTA-----------PVLDIDWCPFN-------------DCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQ 131 (472)
T ss_pred CccCccc-----------cccccccCccC-------------CceeecCCCCceEEEEECCCcccccCcccceEEEeecc
Confidence 4668998 89999999964 678999999999999999665432221 257899
Q ss_pred CCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 134 KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 134 ~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
+ .|.-++|.|... .+|+|++.|++|.+||+.||+.+.+++ |++.|.+++|+- |+.+||+.+.|..|++||.....
T Consensus 132 r-rVg~V~wHPtA~--NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 132 R-RVGLVQWHPTAP--NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred e-eEEEEeecccch--hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence 9 999999999863 799999999999999999999888888 799999999997 99999999999999999864321
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE----cCCeEEEEEcCCC-cee
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT----FPRELVVFDLQYE-TPL 288 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~----~d~~I~iwDl~t~-~~l 288 (1341)
. ..+ -..| . ... -.++-|-.+|. +++.+ .++.+-|||.+.- +.+
T Consensus 207 ~----v~e------------~~~h-e----------G~k---~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~ 255 (472)
T KOG0303|consen 207 V----VSE------------GVAH-E----------GAK---PARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPI 255 (472)
T ss_pred E----eee------------cccc-c----------CCC---cceeEEeccCc-eeeeccccccccceeccCcccccCcc
Confidence 1 000 0000 0 011 12446788887 77766 4789999998743 444
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEE-EecCCcEEEEeccCC
Q 000707 289 FSAALPRGCAKFLDVLADPNNDLLYC-AHLDGKLSIWRRKEG 329 (1341)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s-~~~DgtI~lW~~~~g 329 (1341)
....+..+ ..++-=+..+|.++||- |-.|+.||.+.+...
T Consensus 256 ~~~elDtS-nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 256 ALQELDTS-NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eeEEeccC-CceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 44444432 34443344789998874 668999999987643
No 174
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.51 E-value=5.4e-14 Score=167.95 Aligned_cols=282 Identities=13% Similarity=0.166 Sum_probs=195.3
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVS 575 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS 575 (1341)
.|-||-..|+|+.|.- .|..+.+|++|-.|+||..+++.++....||++.|+.++.+.++.++.
T Consensus 185 rLlgH~naVyca~fDr----------------tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~ia 248 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR----------------TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIA 248 (1113)
T ss_pred HHHhhhhheeeeeecc----------------ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhh
Confidence 4567889999999986 589999999999999999999999999999999999999988775543
Q ss_pred EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP 655 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~ 655 (1341)
++++|--|++|.+.+|. ++.+++| |++.|++|+|||-. +.+.|+++++||. + ...+.
T Consensus 249 ---------aaS~D~vIrvWrl~~~~--pvsvLrg-htgavtaiafsP~~----sss~dgt~~~wd~-r-~~~~~----- 305 (1113)
T KOG0644|consen 249 ---------AASNDKVIRVWRLPDGA--PVSVLRG-HTGAVTAIAFSPRA----SSSDDGTCRIWDA-R-LEPRI----- 305 (1113)
T ss_pred ---------hcccCceEEEEecCCCc--hHHHHhc-cccceeeeccCccc----cCCCCCceEeccc-c-ccccc-----
Confidence 23344579999999998 7777788 89999999999953 7789999999998 4 11111
Q ss_pred eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec
Q 000707 656 FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH 735 (1341)
Q Consensus 656 v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~ 735 (1341)
+.|. ++..- .|+. .+.+. ....+..+++++.|++-+.|...
T Consensus 306 -----y~pr----p~~~~-~~~~--------------~~s~~---------------~~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 306 -----YVPR----PLKFT-EKDL--------------VDSIL---------------FENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred -----cCCC----CCCcc-cccc--------------eeeee---------------ccccccccccccCCcccccchhh
Confidence 1111 10000 0000 00000 01123456788888888877763
Q ss_pred CCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCE
Q 000707 736 GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 736 ~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~ 814 (1341)
.-..++... ..++..+--..+.+++-.+-.+.+|++-+|+ .+.+.+|...+..+.|+|-. .+
T Consensus 347 ~l~~~~~~l-----------if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn------~r 409 (1113)
T KOG0644|consen 347 QLAWRSNLL-----------IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN------PR 409 (1113)
T ss_pred Hhhhhccce-----------EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC------cH
Confidence 211111000 0011111112456777778889999999998 67889999999999999983 34
Q ss_pred E-EEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 815 I-AVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 815 L-as~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
+ .++++||.+.|||+-.+-++..-. .|| ..+.+-.|+++ |. .++....-|.+.+....
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y~-~gh---~kl~d~kFSqd----gt--s~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHYF-IGH---GKLVDGKFSQD----GT--SIALSDDHGQLYILGTG 468 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceeee-ccc---ceeeccccCCC----Cc--eEecCCCCCceEEeccC
Confidence 4 568899999999999887664333 565 56888899998 55 34444555666666543
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.49 E-value=3.7e-12 Score=137.22 Aligned_cols=271 Identities=15% Similarity=0.276 Sum_probs=177.9
Q ss_pred CCCcEEEEeCCCCc---EEEEEeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCeEEEEEccCCce-------eee
Q 000707 537 QSGAVDVVDVSANA---VTASFSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-------RAF 605 (1341)
Q Consensus 537 ~DGtI~lWDl~tg~---~~~~l~~H~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-------~~l 605 (1341)
.|..|.+-+++.+. ..+.|.-|.+.|..|+=+| +.++++.-+....+. ++--.+.||.+..... .++
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s--~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDS--GVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCC--cceeeEEEEecccccCccccchhhHh
Confidence 34566666665432 2355667789999999888 446766555432211 1122567898843210 122
Q ss_pred EEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc--------CceEEEEEcCCCCCCCCCCCCCcc
Q 000707 606 RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--------LPFTVLEWTLPTVPWPSQTGPSRQ 677 (1341)
Q Consensus 606 ~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--------~~v~~l~wsp~~~~~~~~~~~~k~ 677 (1341)
..+...+...|.||.|.|++..+++.. |..|.+|++....+....+. ..+++-.|+|-
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH------------- 181 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH------------- 181 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC-------------
Confidence 223322445899999999999998765 88999999942222222221 12344445532
Q ss_pred cccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCe----eecccCCCCCCcccc
Q 000707 678 SSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR----IRDFRPKWPSSSFIS 753 (1341)
Q Consensus 678 ~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~----v~~~~~~~~~~~l~~ 753 (1341)
.++..++ +..|+++..||++... +.+ .
T Consensus 182 -------------------------------------Hdgnqv~-tt~d~tl~~~D~RT~~~~~sI~d-----------A 212 (370)
T KOG1007|consen 182 -------------------------------------HDGNQVA-TTSDSTLQFWDLRTMKKNNSIED-----------A 212 (370)
T ss_pred -------------------------------------CccceEE-EeCCCcEEEEEccchhhhcchhh-----------h
Confidence 2344544 4578999999996432 222 2
Q ss_pred ccceEEEEee---cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEE
Q 000707 754 SDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD 828 (1341)
Q Consensus 754 ~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWD 828 (1341)
|-..|..+.| .-.+||+|+.||.||+||.+.-+ ...+.+|..+|.+|+|.|... +.|++++.|..|.+|-
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-----qLiLs~~SDs~V~Lsc 287 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-----QLILSGGSDSAVNLSC 287 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-----eEEEecCCCceeEEEe
Confidence 4456888888 33479999999999999998755 577899999999999999732 7899999999999995
Q ss_pred CCCCC---c-----------------cccccccCC-----CCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 829 LDSQD---P-----------------LANSLLQPQ-----FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 829 l~~~~---~-----------------l~~~l~~gh-----~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
...-. + ..+.|..|. .+...|.+++|+.. +|..+||-|.||.+.|=.+.
T Consensus 288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa-----dPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA-----DPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC-----CCeeEEEeccCceEEeecCC
Confidence 43210 0 001111111 12367999999986 89999999999998776654
No 176
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.48 E-value=1.1e-11 Score=154.35 Aligned_cols=228 Identities=14% Similarity=0.129 Sum_probs=153.6
Q ss_pred EeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-----CeE
Q 000707 49 LDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-----RSV 123 (1341)
Q Consensus 49 ~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t-----g~~ 123 (1341)
|++ .|.++..|..|+. .|+.++-+++ .+.+++||+.||+|+|||.+. +..
T Consensus 1034 W~p-~G~lVAhL~Ehs~-----------~v~k~a~s~~-------------~~s~FvsgS~DGtVKvW~~~k~~~~~~s~ 1088 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-----------AVIKLAVSSE-------------HTSLFVSGSDDGTVKVWNLRKLEGEGGSA 1088 (1431)
T ss_pred CCc-cceEeehhhhccc-----------cccceeecCC-------------CCceEEEecCCceEEEeeehhhhcCccee
Confidence 444 3667778889987 8888888764 468999999999999999853 222
Q ss_pred EEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCC--Ce-----EEEEE--eCCCCceEEEEEcCCCCC-
Q 000707 124 VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS--AS-----CMWKY--DASPEYLSCIRRNPFDAR- 193 (1341)
Q Consensus 124 ~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t--g~-----~i~~~--~~~~~~v~~~~fsP~d~~- 193 (1341)
...+.+.. .+.++..+...+.+ +.+|.++.||.|.+-+++. +. +.... ......+.+-+|...+..
T Consensus 1089 rS~ltys~-~~sr~~~vt~~~~~---~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1089 RSELTYSP-EGSRVEKVTMCGNG---DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred eeeEEEec-cCCceEEEEeccCC---CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence 22222221 22378888887776 7888889999999998875 22 22222 221224455566554555
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc
Q 000707 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF 273 (1341)
Q Consensus 194 ~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~ 273 (1341)
.++.+..-+.|..||..... .+-+++. .-..+.+.+++.+|-+.+++.|..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~----------------~~w~lk~-------------~~~hG~vTSi~idp~~~WlviGts 1215 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRH----------------DAWRLKN-------------QLRHGLVTSIVIDPWCNWLVIGTS 1215 (1431)
T ss_pred eEEEEEeccceEEecchhhh----------------hHHhhhc-------------CccccceeEEEecCCceEEEEecC
Confidence 66667777888888753210 0111111 011346888999999999999999
Q ss_pred CCeEEEEEcCCCceeEEEecCCCccceEEEEEcC---CCCEEEEE-e-cCCcEEEEeccCCceeeee
Q 000707 274 PRELVVFDLQYETPLFSAALPRGCAKFLDVLADP---NNDLLYCA-H-LDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 274 d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~p---dg~~L~s~-~-~DgtI~lW~~~~g~~~~~~ 335 (1341)
.|.+.+||+.-+.++.....+. ..++..+..|| +....+++ + ..+-|.+|+..+|.+..++
T Consensus 1216 ~G~l~lWDLRF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1216 RGQLVLWDLRFRVPILSWEHPA-RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred CceEEEEEeecCceeecccCcc-cCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 9999999999999987776542 36666777664 34555544 4 5889999999988755555
No 177
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.47 E-value=5.7e-12 Score=137.62 Aligned_cols=239 Identities=17% Similarity=0.284 Sum_probs=162.2
Q ss_pred eEEEEEcCCCc-EEEEecCCcccccCcccCeEEEEEccCC-------ce------eeeEEeccCCCCCeEEEEEC-----
Q 000707 562 VRGLRWLGNSR-LVSFSYSQVNEKSGGYINRLVVTCLRSG-------IN------RAFRVLQKPERAPIRALRAS----- 622 (1341)
Q Consensus 562 V~~l~fs~d~~-llS~s~d~~~~~sg~~~~~i~lwD~~tG-------~~------~~l~~l~~~~~~~I~~i~~S----- 622 (1341)
..+..|+|||. +++.+. ++.+.+|++... .. -.++. .....|..-.|-
T Consensus 52 ~kgckWSPDGSciL~~se----------dn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~---~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSE----------DNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY---QEGETVYDYCWYSRMKS 118 (406)
T ss_pred hccceeCCCCceEEeecc----------cCeeeEEecChhhcccCCCCccccccceeEEe---ccCCEEEEEEeeecccc
Confidence 46789999985 444333 468899988431 00 01111 122334443432
Q ss_pred --CCCCEEEEEECCCcEEEEeccCCCceeeecc--C---ce---EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCC
Q 000707 623 --SSGRYLLILFRDAPVEVWAMTKNPIMLRSLA--L---PF---TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDG 692 (1341)
Q Consensus 623 --pdG~~Las~s~D~~I~vWDl~~t~~~l~~l~--~---~v---~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g 692 (1341)
|+..++|+.++|.+|++||. -+|.+..++. . .+ .+++|+|+
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~D---------------------------- 169 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPD---------------------------- 169 (406)
T ss_pred CCCccceeeeccccCceeeeec-cccccccchhhhhhHHhhhhheeEEecCC----------------------------
Confidence 67889999999999999999 5876654433 1 12 35667655
Q ss_pred cccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec--CCeeecccCCCCCCccccccceEEEEee---cCCE
Q 000707 693 VSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY---RLPH 767 (1341)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~ 767 (1341)
+++ ++++....|++||+. |+....+..... +.+ +..+.|.+++| +..+
T Consensus 170 ------------------------Geq-lfaGykrcirvFdt~RpGr~c~vy~t~~~-~k~-gq~giisc~a~sP~~~~~ 222 (406)
T KOG2919|consen 170 ------------------------GEQ-LFAGYKRCIRVFDTSRPGRDCPVYTTVTK-GKF-GQKGIISCFAFSPMDSKT 222 (406)
T ss_pred ------------------------CCe-EeecccceEEEeeccCCCCCCcchhhhhc-ccc-cccceeeeeeccCCCCcc
Confidence 344 367788999999993 444433211111 111 34567888888 7779
Q ss_pred EEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEE-CCCeEEEEECCCCCccccccccCCCC
Q 000707 768 VVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLF-HDNTFSVFDLDSQDPLANSLLQPQFP 845 (1341)
Q Consensus 768 LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s-~DgtI~IWDl~~~~~l~~~l~~gh~~ 845 (1341)
++.|+...++-|+.-..+. +..+-||.+.|+.+.|.++ | .+|.+++ .|-.|..||++........| .+|..
T Consensus 223 ~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed--G----n~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~ 295 (406)
T KOG2919|consen 223 LAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED--G----NKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVG 295 (406)
T ss_pred eeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC--c----CeecccccCCCeEEEEeehhccchhhhh-hhhcc
Confidence 9999999999999887766 6677899999999999999 5 6787775 47779999999776555555 66653
Q ss_pred --CCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 846 --GTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 846 --~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
+.+| -++-.|. ++ .|++|+.||.|++||++.
T Consensus 296 ~TNQRI-~FDld~~----~~--~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 296 DTNQRI-LFDLDPK----GE--ILASGDTDGSVRVWDLKD 328 (406)
T ss_pred CccceE-EEecCCC----Cc--eeeccCCCccEEEEecCC
Confidence 2333 2333444 44 799999999999999986
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=6.6e-13 Score=154.36 Aligned_cols=249 Identities=18% Similarity=0.242 Sum_probs=163.8
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC--------cEEEEEeecCCCeEEEEEc
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN--------AVTASFSVHNGTVRGLRWL 568 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg--------~~~~~l~~H~~~V~~l~fs 568 (1341)
+..|...+.+++|+| ..+.|++++.||+|++|+++.. ..+.+|.+|.++|-++...
T Consensus 290 l~s~~d~ir~l~~~~----------------sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~ 353 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHP----------------SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP 353 (577)
T ss_pred eecchhhhhhhhcCC----------------CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEec
Confidence 344677888888887 4688999999999999999321 2467899999999999998
Q ss_pred CCCcEEEEecCCcccccCcccCeEEEEEccCC-------ceeee-EEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEE
Q 000707 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG-------INRAF-RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVW 640 (1341)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG-------~~~~l-~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vW 640 (1341)
+++..+ .+|+.|++|+.|++... .+..+ ..+.| |.+.|+.+++|+....|++++.|+|+++|
T Consensus 354 ~n~~~~---------ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w 423 (577)
T KOG0642|consen 354 SNGEHC---------YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLW 423 (577)
T ss_pred CCceEE---------EeeccCceeeeeccCCCCCcccccCcchhccceec-cccceeeeeecccccceeeecCCceEEee
Confidence 888544 24667789999966421 11122 23345 88999999999999999999999999999
Q ss_pred eccCCCceeeeccCc----e-EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCC
Q 000707 641 AMTKNPIMLRSLALP----F-TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDD 715 (1341)
Q Consensus 641 Dl~~t~~~l~~l~~~----v-~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~ 715 (1341)
+. ..... +++..+ + +.+.+.-. +
T Consensus 424 ~~-~~~~~-~~f~~~~e~g~Plsvd~~ss---~----------------------------------------------- 451 (577)
T KOG0642|consen 424 EP-TEESP-CTFGEPKEHGYPLSVDRTSS---R----------------------------------------------- 451 (577)
T ss_pred cc-CCcCc-cccCCccccCCcceEeeccc---h-----------------------------------------------
Confidence 98 33322 333311 0 12222100 0
Q ss_pred CCCeEEEEecCCcEEEEEecCCee-ecccCCCCCCccccc--cceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eee
Q 000707 716 TSESFAFALANGALGVFEVHGRRI-RDFRPKWPSSSFISS--DGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQ 789 (1341)
Q Consensus 716 ~~e~la~~~~Dg~I~vwdv~~~~v-~~~~~~~~~~~l~~~--~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~ 789 (1341)
.+-...+...+.+++....+ .++ ..++.....+. ...++-+.+ .+++.+++..|+.|+++|..+++ ++.
T Consensus 452 ----~a~~~~s~~~~~~~~~~~ev~s~~-~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 452 ----PAHSLASFRFGYTSIDDMEVVSDL-LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred ----hHhhhhhcccccccchhhhhhhhe-eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 00000111111111111000 000 00000000000 012333444 56789999999999999999998 688
Q ss_pred eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCc
Q 000707 790 FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP 834 (1341)
Q Consensus 790 l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~ 834 (1341)
...|...|+++++.|. | .+|++++.|+.+++|.+....+
T Consensus 527 ~~a~~~svtslai~~n--g----~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPN--G----PYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeeccceecceeecCC--C----ceEEeecCCceeehhhccchhe
Confidence 9999999999999998 4 6899999999999999877653
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=139.69 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=152.3
Q ss_pred ccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-ecCCCeEEEEEcCCCcEEEEe
Q 000707 499 ILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFS-VHNGTVRGLRWLGNSRLVSFS 577 (1341)
Q Consensus 499 g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~-~H~~~V~~l~fs~d~~llS~s 577 (1341)
+|.+.|+++-|.. ..+|.+|+.-|.|++|++.+.+..-.+. .|...|+.+.-.+++++.+-+
T Consensus 12 p~~~~v~s~~fqa-----------------~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqg 74 (323)
T KOG0322|consen 12 PHSSSVTSVLFQA-----------------NERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQG 74 (323)
T ss_pred cccchheehhhcc-----------------chhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcC
Confidence 5788899988765 3458899999999999999988777777 567788888888877666543
Q ss_pred cCCcccccCcccCeEEEEEccCCceeeeEEe-----------------------------------------------cc
Q 000707 578 YSQVNEKSGGYINRLVVTCLRSGINRAFRVL-----------------------------------------------QK 610 (1341)
Q Consensus 578 ~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l-----------------------------------------------~~ 610 (1341)
. |.++.+|++.-+....++.+ ..
T Consensus 75 R----------d~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 75 R----------DPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred C----------CceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCc
Confidence 3 33666666644221111100 00
Q ss_pred ---CCCCCeEEEEEC-CCCC--EEEEEECCCcEEEEeccCCCceeeecc-------------CceEEEEEcCCCCCCCCC
Q 000707 611 ---PERAPIRALRAS-SSGR--YLLILFRDAPVEVWAMTKNPIMLRSLA-------------LPFTVLEWTLPTVPWPSQ 671 (1341)
Q Consensus 611 ---~~~~~I~~i~~S-pdG~--~Las~s~D~~I~vWDl~~t~~~l~~l~-------------~~v~~l~wsp~~~~~~~~ 671 (1341)
+..+.+.+..+- .++. +|++|..++.+.+||+ .++..+-.++ .++.++++.+.
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~-S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~------- 216 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDL-STGDKIIQLPQSSKVESPNASHKQPVLSLDYASS------- 216 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEc-cCCceeeccccccccccchhhccCcceeeeechh-------
Confidence 011233333322 1233 4567889999999999 5654333232 12222222210
Q ss_pred CCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCC--e--eecc-cCCC
Q 000707 672 TGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGR--R--IRDF-RPKW 746 (1341)
Q Consensus 672 ~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~--~--v~~~-~~~~ 746 (1341)
...=++++.+-.+..|+++.. . ++.. ..+-
T Consensus 217 ---------------------------------------------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 217 ---------------------------------------------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred ---------------------------------------------hcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 001134455556667776321 1 1110 1111
Q ss_pred CCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEE
Q 000707 747 PSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFS 825 (1341)
Q Consensus 747 ~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~ 825 (1341)
|+- .-..|..|++.+|+++.||.||||..++.. +..+.-|++.|.+|+|+|+. ..+|.++.|++|.
T Consensus 252 pGv-------~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~------~lmAaaskD~rIS 318 (323)
T KOG0322|consen 252 PGV-------SGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDC------ELMAAASKDARIS 318 (323)
T ss_pred CCc-------cceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCC------chhhhccCCceEE
Confidence 221 113455599999999999999999999988 67788999999999999993 5799999999999
Q ss_pred EEEC
Q 000707 826 VFDL 829 (1341)
Q Consensus 826 IWDl 829 (1341)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=2.7e-13 Score=162.14 Aligned_cols=278 Identities=12% Similarity=0.060 Sum_probs=199.9
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCC
Q 000707 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNP 133 (1341)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~ 133 (1341)
+|.+.-|.||.. .|.|+.|-.. |.++.+|+.|..|+||...++.++.. ..||+
T Consensus 180 mk~ikrLlgH~n-----------aVyca~fDrt--------------g~~Iitgsdd~lvKiwS~et~~~lAs--~rGhs 232 (1113)
T KOG0644|consen 180 MKNIKRLLGHRN-----------AVYCAIFDRT--------------GRYIITGSDDRLVKIWSMETARCLAS--CRGHS 232 (1113)
T ss_pred HHHHHHHHhhhh-----------heeeeeeccc--------------cceEeecCccceeeeeeccchhhhcc--CCCCc
Confidence 345666789987 8999999754 78999999999999999999999988 58999
Q ss_pred CCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 134 KLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 134 ~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
+ .|++++-+... .++|+++.|..|++|-+.+|.++..+.+|++.|++++|+|+- +.+.||++.+||..-.
T Consensus 233 ~-ditdlavs~~n---~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~- 302 (1113)
T KOG0644|consen 233 G-DITDLAVSSNN---TMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE- 302 (1113)
T ss_pred c-ccchhccchhh---hhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEecccccc-
Confidence 9 99999988765 789999999999999999999999999999999999999964 6688999999985210
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEec
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l 293 (1341)
...+ . ++|. .+++
T Consensus 303 -----~~~y-----------------~----prp~-------------~~~~---------------------------- 315 (1113)
T KOG0644|consen 303 -----PRIY-----------------V----PRPL-------------KFTE---------------------------- 315 (1113)
T ss_pred -----cccc-----------------C----CCCC-------------Cccc----------------------------
Confidence 0000 0 0110 0111
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcc
Q 000707 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1341)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~ 373 (1341)
...+.++.++..+..+.++++|+.-+.|...--+ | .. ..+.++.++.+-
T Consensus 316 ---~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-----~--~~-----------~~lif~t~ssd~---------- 364 (1113)
T KOG0644|consen 316 ---KDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-----W--RS-----------NLLIFVTRSSDL---------- 364 (1113)
T ss_pred ---ccceeeeeccccccccccccCCcccccchhhHhh-----h--hc-----------cceEEEeccccc----------
Confidence 1234566677888889999999998888654111 0 00 012222222110
Q ss_pred cCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCc
Q 000707 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1341)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~ 453 (1341)
....++.-.+-++++|++.++....
T Consensus 365 ---------------------------~~~~~~ar~~~~~~vwnl~~g~l~H---------------------------- 389 (1113)
T KOG0644|consen 365 ---------------------------SSIVVTARNDHRLCVWNLYTGQLLH---------------------------- 389 (1113)
T ss_pred ---------------------------cccceeeeeeeEeeeeecccchhhh----------------------------
Confidence 1244556678899999887664211
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000707 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1341)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llA 533 (1341)
.+.||+..++.|.++| +| -....
T Consensus 390 ------------------------------------------~l~ghsd~~yvLd~Hp-----------fn----~ri~m 412 (1113)
T KOG0644|consen 390 ------------------------------------------NLMGHSDEVYVLDVHP-----------FN----PRIAM 412 (1113)
T ss_pred ------------------------------------------hhcccccceeeeeecC-----------CC----cHhhh
Confidence 1235788899999999 33 34556
Q ss_pred EEeCCCcEEEEeCCCCcEEEEE-eecCCCeEEEEEcCCCcEEEEecC
Q 000707 534 LGTQSGAVDVVDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l-~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
+++.||.+.|||+..|..++.+ .+| +.+..-.|++||.-++.+.+
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred hccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCC
Confidence 8999999999999999876655 455 55667789999866665554
No 181
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=2.2e-11 Score=149.23 Aligned_cols=163 Identities=18% Similarity=0.316 Sum_probs=106.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC-CCeEEEEEeCCC
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDASP 179 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~~~ 179 (1341)
...+++++..-+|+|||.+.++.+..|.........|.+|++....++ .+|.+++.||.|+||+-. ++ | ...
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~-aLlLtas~dGvIRIwk~y~~~---~---~~~ 1148 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDD-ALLLTASSDGVIRIWKDYADK---W---KKP 1148 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccch-hheeeeccCceEEEecccccc---c---CCc
Confidence 467899988889999999999999888543333337999999987644 799999999999999743 21 1 001
Q ss_pred CceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 180 EYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 180 ~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
+-|+ +|.+..+....+-+ -|.+ +
T Consensus 1149 eLVT--aw~~Ls~~~~~~r~-~~~v------------------------------------------------------~ 1171 (1387)
T KOG1517|consen 1149 ELVT--AWSSLSDQLPGARG-TGLV------------------------------------------------------V 1171 (1387)
T ss_pred eeEE--eeccccccCccCCC-CCee------------------------------------------------------e
Confidence 1121 12221100000000 0111 1
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEc-CCCCEEEEEecCCcEEEEeccC
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLAD-PNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~-pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
.+-....+|++++.-+.|+|||++..+....++... ...+.++... ..|+.|+.|-.||+||++|++.
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeeccc
Confidence 233333466667777999999999998888777642 2233333332 4589999999999999999874
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.40 E-value=7.4e-12 Score=135.10 Aligned_cols=246 Identities=15% Similarity=0.262 Sum_probs=162.7
Q ss_pred CCeEEEEEcC--C--CcEEEEecCCcccccCcccCeEEEEEc--cCCceeeeEEeccCCCCCeEEEEECCCC-----CEE
Q 000707 560 GTVRGLRWLG--N--SRLVSFSYSQVNEKSGGYINRLVVTCL--RSGINRAFRVLQKPERAPIRALRASSSG-----RYL 628 (1341)
Q Consensus 560 ~~V~~l~fs~--d--~~llS~s~d~~~~~sg~~~~~i~lwD~--~tG~~~~l~~l~~~~~~~I~~i~~SpdG-----~~L 628 (1341)
-++.++.|+. + -+++.+++. ..+.|.|+|.-+ .+|+...... -.|..|++.+.|.|+. +.|
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~------Ee~~Nkvqiv~ld~~s~e~~~~a~--fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFI------EEYNNKVQIVQLDEDSGELVEDAN--FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CceeeeccccCCCcceeEEEeeec------cccCCeeEEEEEccCCCceeccCC--CCCCCCccceEecCCccccCcchh
Confidence 3567788862 2 355555543 345678888655 4555322221 1378899999999986 345
Q ss_pred EEEECCCcEEEEeccC-CCc-eee-ecc--------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCccccc
Q 000707 629 LILFRDAPVEVWAMTK-NPI-MLR-SLA--------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPT 697 (1341)
Q Consensus 629 as~s~D~~I~vWDl~~-t~~-~l~-~l~--------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~ 697 (1341)
|+. +..+|+|.+.. ..+ .+. .+. .|.|+..|.
T Consensus 117 ATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWn----------------------------------- 159 (364)
T KOG0290|consen 117 ATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWN----------------------------------- 159 (364)
T ss_pred hcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccc-----------------------------------
Confidence 554 44799998831 111 000 010 122333332
Q ss_pred ccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-c--CCEEEEEeCC
Q 000707 698 IASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY-R--LPHVVMGDRS 774 (1341)
Q Consensus 698 ~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~-d--g~~LasGs~D 774 (1341)
.-+...+.+.+-|-+..|||++......+++ .|..|+..|..|+| . -+++|+.+.|
T Consensus 160 ----------------e~dp~~igtSSiDTTCTiWdie~~~~~~vkT-----QLIAHDKEV~DIaf~~~s~~~FASvgaD 218 (364)
T KOG0290|consen 160 ----------------EVDPNLIGTSSIDTTCTIWDIETGVSGTVKT-----QLIAHDKEVYDIAFLKGSRDVFASVGAD 218 (364)
T ss_pred ----------------cCCcceeEeecccCeEEEEEEeeccccceee-----EEEecCcceeEEEeccCccceEEEecCC
Confidence 0123567788899999999996542211122 24579999999999 3 3689999999
Q ss_pred CcEEEEECCCCceeee----ccCCCcEEEEEEccCCCCCCCCCEEEEEE-CCCeEEEEECCCCCccccccccCCCCCCcE
Q 000707 775 GNIRWWDVTTGHSSQF----STHREGIRRIKFSPVVPGDRSRGRIAVLF-HDNTFSVFDLDSQDPLANSLLQPQFPGTLV 849 (1341)
Q Consensus 775 gtI~lWDl~tg~~~~l----~gH~~~V~~V~fSP~~~gd~~~~~Las~s-~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V 849 (1341)
|.+|+||++..+-.++ +....+..+++|++..+ .++|+-. +...|.|-|++.+.-....| ++|. +.|
T Consensus 219 GSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp-----nymATf~~dS~~V~iLDiR~P~tpva~L-~~H~--a~V 290 (364)
T KOG0290|consen 219 GSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-----NYMATFAMDSNKVVILDIRVPCTPVARL-RNHQ--ASV 290 (364)
T ss_pred CcEEEEEecccccceEEecCCCCCCcceeeccCcCCc-----hHHhhhhcCCceEEEEEecCCCcceehh-hcCc--ccc
Confidence 9999999988663332 23367888899988644 4677743 45679999999876322334 7776 689
Q ss_pred EEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 850 LELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 850 ~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
.+++|.|. .+-.|+++|.|..+-+||+...
T Consensus 291 NgIaWaPh-----S~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 291 NGIAWAPH-----SSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cceEecCC-----CCceeeecCCcceEEEEecccc
Confidence 99999997 3337899999999999999863
No 183
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.2e-11 Score=136.42 Aligned_cols=274 Identities=18% Similarity=0.234 Sum_probs=179.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCC-C--cEEEEecCCcccccCcccCeEEEEEccCCceeee
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGN-S--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d-~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1341)
...+|++..+|+|++||..+|+.+.+|.+|+..++.+.|..+ + .+++++ .|++|++||+|+....+.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s----------sDG~Vr~wD~Rs~~e~a~ 109 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS----------SDGTVRLWDIRSQAESAR 109 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec----------cCCeEEEEEeecchhhhh
Confidence 468999999999999999999999999999999999999763 2 344443 356999999988653333
Q ss_pred EEeccCCC-CCeEEEEECCCCCEEEEEE----CCCcEEEEeccCCC-ceeeecc----CceEEEEEcCCCCCCCCCCCCC
Q 000707 606 RVLQKPER-APIRALRASSSGRYLLILF----RDAPVEVWAMTKNP-IMLRSLA----LPFTVLEWTLPTVPWPSQTGPS 675 (1341)
Q Consensus 606 ~~l~~~~~-~~I~~i~~SpdG~~Las~s----~D~~I~vWDl~~t~-~~l~~l~----~~v~~l~wsp~~~~~~~~~~~~ 675 (1341)
..... +. .+..+++..-.++.++.|. .|..|.+||+ +.. +.++.+. ..||.+.|+|.
T Consensus 110 ~~~~~-~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDv-R~~qq~l~~~~eSH~DDVT~lrFHP~----------- 176 (376)
T KOG1188|consen 110 ISWTQ-QSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDV-RSEQQLLRQLNESHNDDVTQLRFHPS----------- 176 (376)
T ss_pred eeccC-CCCCcceEeeccCcCCeEEeccccccCceEEEEEEe-ccccchhhhhhhhccCcceeEEecCC-----------
Confidence 33222 33 4677888877888888874 4678999999 444 3355443 45789999864
Q ss_pred cccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCcccccc
Q 000707 676 RQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSD 755 (1341)
Q Consensus 676 k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~ 755 (1341)
+.+.|++|+.||-|.+||+++..-.|. .. ....|.
T Consensus 177 ----------------------------------------~pnlLlSGSvDGLvnlfD~~~d~EeDa--L~---~viN~~ 211 (376)
T KOG1188|consen 177 ----------------------------------------DPNLLLSGSVDGLVNLFDTKKDNEEDA--LL---HVINHG 211 (376)
T ss_pred ----------------------------------------CCCeEEeecccceEEeeecCCCcchhh--HH---Hhhccc
Confidence 136799999999999999965422110 00 001344
Q ss_pred ceEEEEee--cC-CEEEEEeCCCcEEEEECCCCce-eeeccC--C----------CcEEEEEEccCCCCCCCCCEEEEEE
Q 000707 756 GLITAMAY--RL-PHVVMGDRSGNIRWWDVTTGHS-SQFSTH--R----------EGIRRIKFSPVVPGDRSRGRIAVLF 819 (1341)
Q Consensus 756 ~~v~sla~--dg-~~LasGs~DgtI~lWDl~tg~~-~~l~gH--~----------~~V~~V~fSP~~~gd~~~~~Las~s 819 (1341)
.+|.++.| ++ +.|.+-+.+++..+|+++.+.. ..+.-- . ..+-.. .+|... +..++++
T Consensus 212 sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~-----~~~~l~g 285 (376)
T KOG1188|consen 212 SSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDK-----DTCALAG 285 (376)
T ss_pred ceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCc-----ceEEEec
Confidence 56889999 43 3577888899999999988752 111100 0 011110 124321 3555554
Q ss_pred C-CCeEEEEECC---CCCcccc--ccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 820 H-DNTFSVFDLD---SQDPLAN--SLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 820 ~-DgtI~IWDl~---~~~~l~~--~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
. -+...++-+. ++. +.. +.++|+. ..-|.++-|... +. +|.+||.||.+.+|..+..
T Consensus 286 ~~~n~~~~~~~~~~~s~~-~~~~~a~l~g~~-~eiVR~i~~~~~----~~--~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGS-LLTEPAILQGGH-EEIVRDILFDVK----ND--VLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred cccCceeEEEeeeccccc-ccCccccccCCc-HHHHHHHhhhcc----cc--eeeccCCCceEEEEecCCc
Confidence 4 4556665332 322 111 1224422 245778877643 34 6789999999999997543
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.39 E-value=1.1e-11 Score=133.67 Aligned_cols=180 Identities=13% Similarity=0.177 Sum_probs=141.1
Q ss_pred CCCccccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEeCCCcce-eEeecCCCCCCCCCCCCCCCcEEEEEEcc
Q 000707 8 PADSWDCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSISILDSRSLQL-ISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1341)
Q Consensus 8 ~~~~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~-~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1341)
....|+|-..|+-..+. +++|+-|-|++ .+|.-.++.|.+|+...+.. +..+..... + .-...-++-+|||
T Consensus 108 ~~~tlE~v~~Ldteavg-~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s--~----e~~~~ftsg~Wsp 180 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVG-KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSES--A----EMRHSFTSGAWSP 180 (370)
T ss_pred ccchhhHhhcCCHHHhC-ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeeccccc--c----cccceecccccCC
Confidence 34459998888866554 78999999998 78887899999999877654 444432211 0 0012677888998
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEE
Q 000707 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1341)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1341)
. .+|..+|+.+ |+++..||+++-.+...++ ..|.. .|.+|.|.|+.. .+|++++.|+.|+|||
T Consensus 181 H------------Hdgnqv~tt~-d~tl~~~D~RT~~~~~sI~-dAHgq-~vrdlDfNpnkq--~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 181 H------------HDGNQVATTS-DSTLQFWDLRTMKKNNSIE-DAHGQ-RVRDLDFNPNKQ--HILVTCGDDGYVRIWD 243 (370)
T ss_pred C------------CccceEEEeC-CCcEEEEEccchhhhcchh-hhhcc-eeeeccCCCCce--EEEEEcCCCccEEEEe
Confidence 4 5788898876 8999999999887766642 34545 799999999863 7999999999999999
Q ss_pred CC-CCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 166 TT-SASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 166 ~~-tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
++ +..++..+..|..-|.+++|+|+....+.++|.|..|.++....
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 98 44578888888889999999999999999999999999986543
No 185
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1.8e-11 Score=149.61 Aligned_cols=234 Identities=17% Similarity=0.148 Sum_probs=150.9
Q ss_pred CCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeE
Q 000707 538 SGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIR 617 (1341)
Q Consensus 538 DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~ 617 (1341)
+..|.|||..... .+.+..|...|.+..|+|||+.+.+.... ..+..|++||+.+|+.+.+..+.+ ...
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~------~~~~~i~i~dl~tg~~~~l~~~~g----~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFE------NKKSQLVVHDLRSGARKVVASFRG----HNG 251 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEec------CCCcEEEEEeCCCCceEEEecCCC----ccC
Confidence 5789999986444 56677888899999999999765543321 123579999999987555544333 234
Q ss_pred EEEECCCCCEEEEEE-CCCcEEEE--eccCCCceeeecc--CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCC
Q 000707 618 ALRASSSGRYLLILF-RDAPVEVW--AMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDG 692 (1341)
Q Consensus 618 ~i~~SpdG~~Las~s-~D~~I~vW--Dl~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g 692 (1341)
.++|||||++|+.++ .++.++|| |+ .++...+... ..++...|+|+
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~-~~~~~~~lt~~~~~~~~~~wSpD---------------------------- 302 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGA-NGGTPSQLTSGAGNNTEPSWSPD---------------------------- 302 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEEC-CCCCeEeeccCCCCcCCEEECCC----------------------------
Confidence 689999999998765 68877766 55 3444322111 12345667654
Q ss_pred cccccccCCCCCcCCCCCCccCCCCCeEEEEe-cCCcEEEEEec--CCeeecccCCCCCCccccccceEEEEeecCCEEE
Q 000707 693 VSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVV 769 (1341)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~La 769 (1341)
++.+++++ .+|...+|+++ +...+.. ++.+....++.||++|+
T Consensus 303 ------------------------G~~i~f~s~~~g~~~I~~~~~~~~~~~~l----------~~~~~~~~~SpDG~~ia 348 (429)
T PRK01742 303 ------------------------GQSILFTSDRSGSPQVYRMSASGGGASLV----------GGRGYSAQISADGKTLV 348 (429)
T ss_pred ------------------------CCEEEEEECCCCCceEEEEECCCCCeEEe----------cCCCCCccCCCCCCEEE
Confidence 34555554 57888888773 3322111 11121123344999999
Q ss_pred EEeCCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECC--CCCccccccccCCCCCC
Q 000707 770 MGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD--SQDPLANSLLQPQFPGT 847 (1341)
Q Consensus 770 sGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~--~~~~l~~~l~~gh~~~~ 847 (1341)
.++.++ |.+||+.+++...+..+ .....+.|+|+ | ..|+.++.++.+.+|++. ++. ....+ .+|. +
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPd--G----~~i~~~s~~g~~~~l~~~~~~G~-~~~~l-~~~~--g 416 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSST-FLDESPSISPN--G----IMIIYSSTQGLGKVLQLVSADGR-FKARL-PGSD--G 416 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCC-CCCCCceECCC--C----CEEEEEEcCCCceEEEEEECCCC-ceEEc-cCCC--C
Confidence 888766 55699999875544322 23467889999 5 688888899999988863 343 22333 3443 5
Q ss_pred cEEEEEEcCC
Q 000707 848 LVLELDWLPT 857 (1341)
Q Consensus 848 ~V~~l~ws~~ 857 (1341)
.+.+.+|+|.
T Consensus 417 ~~~~p~wsp~ 426 (429)
T PRK01742 417 QVKFPAWSPY 426 (429)
T ss_pred CCCCcccCCC
Confidence 6888999985
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.35 E-value=6.7e-11 Score=129.42 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=154.3
Q ss_pred ceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE
Q 000707 29 SADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1341)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1341)
-+.+||+| .||..++..++|-|..+.|+.+.+.--. .|.-+-|+-|. ...|..+
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cld------------ki~yieW~ads-------------~~ilC~~ 67 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLD------------KIVYIEWKADS-------------CHILCVA 67 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHH------------Hhhheeeeccc-------------eeeeeee
Confidence 47899999 8999999999999999999876654322 67889999775 3468888
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEE
Q 000707 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRR 187 (1341)
Q Consensus 108 ~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~f 187 (1341)
..++.|.+|++...+....+ +..+. ++..++||||+. .+|.+..-+-.|.+|.+.|..+.. +......+..++|
T Consensus 68 yk~~~vqvwsl~Qpew~ckI--deg~a-gls~~~WSPdgr--hiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f 141 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKI--DEGQA-GLSSISWSPDGR--HILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAF 141 (447)
T ss_pred eccceEEEEEeecceeEEEe--ccCCC-cceeeeECCCcc--eEeeeecceeEEEEEEeccceeEE-ecccccCceeEEE
Confidence 99999999999999888874 55566 899999999873 788888889999999998776543 2333445678999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000707 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1341)
Q Consensus 188 sP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~ 267 (1341)
+| |++..+.++.....-.+.+.. -+.| .+.++... ...+...+-+||||..
T Consensus 142 ~~-dg~f~ai~sRrDCkdyv~i~~-------c~~W----------~ll~~f~~-----------dT~DltgieWsPdg~~ 192 (447)
T KOG4497|consen 142 HP-DGQFCAILSRRDCKDYVQISS-------CKAW----------ILLKEFKL-----------DTIDLTGIEWSPDGNW 192 (447)
T ss_pred CC-CCceeeeeecccHHHHHHHHh-------hHHH----------HHHHhcCC-----------CcccccCceECCCCcE
Confidence 99 888777776421100000000 0001 11111111 1123445689999855
Q ss_pred eEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEec
Q 000707 268 IIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 268 l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1341)
+.|||---.-.+ +.-+++ -++..+..+|-+++|+.|+.|+.+|+-+-
T Consensus 193 ---------laVwd~~Leykv--~aYe~~-lG~k~v~wsP~~qflavGsyD~~lrvlnh 239 (447)
T KOG4497|consen 193 ---------LAVWDNVLEYKV--YAYERG-LGLKFVEWSPCNQFLAVGSYDQMLRVLNH 239 (447)
T ss_pred ---------EEEecchhhhee--eeeeec-cceeEEEeccccceEEeeccchhhhhhce
Confidence 456764432221 122332 34556677888999999999999998764
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=8.8e-10 Score=130.09 Aligned_cols=231 Identities=13% Similarity=0.084 Sum_probs=142.3
Q ss_pred EEEEcCCeEEEEeCCC-cc--eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE-eCCCcE
Q 000707 38 LAFASGSSISILDSRS-LQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA-DRHGRV 113 (1341)
Q Consensus 38 lA~gs~~~V~v~d~~~-~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg-~~dG~I 113 (1341)
+|.+.++.|.+||..+ ++ .+++++.. + ....++++|+ +++|+.+ ..++.|
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~-~-----------~~~~l~~spd--------------~~~lyv~~~~~~~i 59 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVP-G-----------QVQPMVISPD--------------KRHLYVGVRPEFRV 59 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecC-C-----------CCccEEECCC--------------CCEEEEEECCCCcE
Confidence 3345578999999863 33 55666432 2 4567888876 4566554 468999
Q ss_pred EEEeCC-CCeE--EEEecCCCCCCCCeeEEEEeecCCCccEEEEE-eCCCeEEEEECCC-Ce---EEEEEeCCCCceEEE
Q 000707 114 ALLDFR-LRSV--VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI-NGPSVLSLYNTTS-AS---CMWKYDASPEYLSCI 185 (1341)
Q Consensus 114 ~vWDv~-tg~~--~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~-s~d~~i~lWd~~t-g~---~i~~~~~~~~~v~~~ 185 (1341)
.+|++. +|.. +..... .+ ....++|+|++ ++|.++ ..++.|.+|++.+ |. .+....+ .....++
T Consensus 60 ~~~~~~~~g~l~~~~~~~~---~~-~p~~i~~~~~g---~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~ 131 (330)
T PRK11028 60 LSYRIADDGALTFAAESPL---PG-SPTHISTDHQG---RFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSA 131 (330)
T ss_pred EEEEECCCCceEEeeeecC---CC-CceEEEECCCC---CEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEe
Confidence 999996 4543 222211 23 46789999987 555544 4589999999863 32 2322222 2345678
Q ss_pred EEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccC
Q 000707 186 RRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPH 264 (1341)
Q Consensus 186 ~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpd 264 (1341)
+|+| |++.+.++ ..++.|.+||+..... ..... ....++ + ... ....++|+||
T Consensus 132 ~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~----l~~~~-----~~~~~~------------~-~g~---~p~~~~~~pd 185 (330)
T PRK11028 132 NIDP-DNRTLWVPCLKEDRIRLFTLSDDGH----LVAQE-----PAEVTT------------V-EGA---GPRHMVFHPN 185 (330)
T ss_pred EeCC-CCCEEEEeeCCCCEEEEEEECCCCc----ccccC-----CCceec------------C-CCC---CCceEEECCC
Confidence 8999 88888655 4568999999754210 00000 000000 0 001 1235699999
Q ss_pred CCceEEEEc-CCeEEEEEcCC--Cce--eEEEec-CC---CccceEEEEEcCCCCEEEEEec-CCcEEEEeccC
Q 000707 265 WRHIIFVTF-PRELVVFDLQY--ETP--LFSAAL-PR---GCAKFLDVLADPNNDLLYCAHL-DGKLSIWRRKE 328 (1341)
Q Consensus 265 g~~l~~~~~-d~~I~iwDl~t--~~~--l~~~~l-~~---~~~~~~~v~~~pdg~~L~s~~~-DgtI~lW~~~~ 328 (1341)
|+.++++.. +++|.+||+.. ++. +..+.. +. +......+.++|||++||++.+ +++|.+|++.+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 999888775 89999999973 332 333321 11 1111235778999999999854 78999999854
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=9e-12 Score=141.28 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=141.6
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEe-
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD- 176 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~- 176 (1341)
+++|..||+|+.||++|||++.+-..+.. ...|++ .|.+|.|+||+ .+|++.+.| ..++|++.+|-++..++
T Consensus 153 ~~~gs~latgg~dg~lRv~~~Ps~~t~l~--e~~~~~-eV~DL~FS~dg---k~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 153 NGDGSKLATGGTDGTLRVWEWPSMLTILE--EIAHHA-EVKDLDFSPDG---KFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred cCCCCEeeeccccceEEEEecCcchhhhh--hHhhcC-ccccceeCCCC---cEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 45688999999999999999866655544 356777 99999999987 899999999 89999999997775554
Q ss_pred CC-CCceEEEEEcCCCC-----CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000707 177 AS-PEYLSCIRRNPFDA-----RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1341)
Q Consensus 177 ~~-~~~v~~~~fsP~d~-----~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1341)
.. ...+..++|+- |+ +.++...+-+.|..+|......+ ...++.... .
T Consensus 226 ~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~--------------~~l~~~~~~-----------~ 279 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGS--------------NFLRLRKKI-----------K 279 (398)
T ss_pred cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccc--------------cccchhhhh-----------h
Confidence 32 34667888887 55 33333344556666554321110 111111100 0
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 251 ~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
. ...+.+++.|+||+.++.++.||.|.|++..+-+++..++- -|...+..+.|+||.+.+++.+.|.++.+-...
T Consensus 280 ~-~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 280 R-FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred c-cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehh-hheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 0 11366789999999999999999999999999988876653 234567789999999999999999888776553
No 189
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=129.66 Aligned_cols=287 Identities=12% Similarity=0.148 Sum_probs=190.4
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCC------cEEEEE-eecCCCeEEEEEcC
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSAN------AVTASF-SVHNGTVRGLRWLG 569 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg------~~~~~l-~~H~~~V~~l~fs~ 569 (1341)
+.+|.+-|.+|-|+- ++++||+|+.|-.++||+++.- +.+... ..|...|.+++|..
T Consensus 52 ~~~H~GCiNAlqFS~----------------N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 52 VREHTGCINALQFSH----------------NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhccccceeeecc----------------CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc
Confidence 446889999999986 4899999999999999998632 222222 23558999999987
Q ss_pred CCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEecc-CCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCc-
Q 000707 570 NSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQK-PERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPI- 647 (1341)
Q Consensus 570 d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~-~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~- 647 (1341)
.++++ .+|..+++|.+-|+++.+ .+-+... ...+.|..+..+|..+.|++.+.++.|-+||. +..+
T Consensus 116 ~N~~~---------~SG~~~~~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~-Rd~~~ 183 (609)
T KOG4227|consen 116 ENRFL---------YSGERWGTVIKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDN-RDRQN 183 (609)
T ss_pred CCeeE---------ecCCCcceeEeeecccce--eeeeecccCcccceeecccCCCCceEEEEecCceEEEEec-cCCCC
Confidence 77666 245566799999999887 3333211 13458999999999999999999999999998 4332
Q ss_pred -----eeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE
Q 000707 648 -----MLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF 722 (1341)
Q Consensus 648 -----~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~ 722 (1341)
++...+..|..+.|.|.. ..++++
T Consensus 184 ~~~~~~~AN~~~~F~t~~F~P~~---------------------------------------------------P~Li~~ 212 (609)
T KOG4227|consen 184 PISLVLPANSGKNFYTAEFHPET---------------------------------------------------PALILV 212 (609)
T ss_pred CCceeeecCCCccceeeeecCCC---------------------------------------------------ceeEEe
Confidence 222223456667776531 245677
Q ss_pred EecCCcEEEEEecCCe--eeccc--CCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeec-cC--
Q 000707 723 ALANGALGVFEVHGRR--IRDFR--PKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFS-TH-- 793 (1341)
Q Consensus 723 ~~~Dg~I~vwdv~~~~--v~~~~--~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~-gH-- 793 (1341)
++..+-+.+||+.... +.... .-+|.. .+. -..+-| .|..+.+--...---+||+-+.++-.|. -|
T Consensus 213 ~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~----~~~-~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~ 287 (609)
T KOG4227|consen 213 NSETGGPNVFDRRMQARPVYQRSMFKGLPQE----NTE-WMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNP 287 (609)
T ss_pred ccccCCCCceeeccccchHHhhhccccCccc----chh-hhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCC
Confidence 7888889999985422 11100 011110 000 012334 6777766655556667888776544332 12
Q ss_pred -----CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCc------cc---------------cccccCCCCCC
Q 000707 794 -----REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP------LA---------------NSLLQPQFPGT 847 (1341)
Q Consensus 794 -----~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~------l~---------------~~l~~gh~~~~ 847 (1341)
...|.+++|.-+ ..+++++.|-.|.+|.+..... +. .+.+.||. .
T Consensus 288 ~GY~N~~T~KS~~F~~D-------~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHR--S 358 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDD-------YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHR--S 358 (609)
T ss_pred Ccceeeeeeeeeeeecc-------eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccc--c
Confidence 235778888776 4599999999999998742210 10 01224554 4
Q ss_pred cEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 848 LVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 848 ~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
-+..|-|+|- . .+|++.+..+.||+|.-.
T Consensus 359 v~NQVRF~~H-----~-~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 359 VPNQVRFSQH-----N-NLLVSSGVENSFKLWSDH 387 (609)
T ss_pred cccceeecCC-----c-ceEeccchhhheeccccc
Confidence 5678999986 2 368999999999999743
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.7e-10 Score=141.61 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=80.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC---cEEEEEeecCCC--eEEEEEcCCC--cEEEEecCCcccccCcccCeEEEEEccCC
Q 000707 528 AVPLVALGTQSGAVDVVDVSAN---AVTASFSVHNGT--VRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg---~~~~~l~~H~~~--V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1341)
.|.++|.|..||.||+||.... ..+.....|+.. |..+.+-++| .++|++. +|.|++||++..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~----------~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ----------DGDIQLLDLRMS 1289 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc----------CCeEEEEecccC
Confidence 4789999999999999997533 356677889876 9999996644 6887655 458999999873
Q ss_pred c-eeeeEEeccCC--CCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee
Q 000707 601 I-NRAFRVLQKPE--RAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1341)
Q Consensus 601 ~-~~~l~~l~~~~--~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~ 651 (1341)
. ...+.. ..+- .+.++++.++++...+|+|+. +.|+||++ .|+.+..
T Consensus 1290 ~~e~~~~i-v~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~--~G~~l~~ 1339 (1387)
T KOG1517|consen 1290 SKETFLTI-VAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL--SGEQLNI 1339 (1387)
T ss_pred ccccccee-eeccccCccceeeeeccCCCeeeecCc-ceEEEEec--Chhhhcc
Confidence 2 122221 1111 124899999999999999988 89999998 4544433
No 191
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.32 E-value=2e-10 Score=124.16 Aligned_cols=285 Identities=14% Similarity=0.198 Sum_probs=182.4
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEe----CCCcEEEEeCC--CCcEEEE-EeecCCCeEEEEEcCCC---
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGT----QSGAVDVVDVS--ANAVTAS-FSVHNGTVRGLRWLGNS--- 571 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs----~DGtI~lWDl~--tg~~~~~-l~~H~~~V~~l~fs~d~--- 571 (1341)
-+++++.|+-. ...+-+||.|+ ....|+|..+. ++..+.. -.-|.-+++.+.|.|+.
T Consensus 45 ~~lya~~Ws~~-------------~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 45 WPLYAMNWSVR-------------PDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred CceeeeccccC-------------CCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCcccc
Confidence 45777887741 02456899987 34567776653 4443221 13688999999999875
Q ss_pred --cEEEEecCCcccccCcccCeEEEEEccC--CceeeeEEe----ccCCCCCeEEEEECC-CCCEEEEEECCCcEEEEec
Q 000707 572 --RLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVL----QKPERAPIRALRASS-SGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 572 --~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l----~~~~~~~I~~i~~Sp-dG~~Las~s~D~~I~vWDl 642 (1341)
.+++.+. ..++||.+.. ++..+-..+ ...+-+|+++..|.. |-+++.+.|-|.|..|||+
T Consensus 112 ~pdlLATs~-----------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdi 180 (364)
T KOG0290|consen 112 YPDLLATSS-----------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDI 180 (364)
T ss_pred Ccchhhccc-----------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEE
Confidence 3443332 2799998863 221111111 112557899988884 6688999999999999999
Q ss_pred cCCCce--ee----eccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCC
Q 000707 643 TKNPIM--LR----SLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDT 716 (1341)
Q Consensus 643 ~~t~~~--l~----~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~ 716 (1341)
+++.. ++ -..+.|..++|... .
T Consensus 181 -e~~~~~~vkTQLIAHDKEV~DIaf~~~---------------------------------------------------s 208 (364)
T KOG0290|consen 181 -ETGVSGTVKTQLIAHDKEVYDIAFLKG---------------------------------------------------S 208 (364)
T ss_pred -eeccccceeeEEEecCcceeEEEeccC---------------------------------------------------c
Confidence 56422 11 12246777777621 2
Q ss_pred CCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee---cCCEEEEEe-CCCcEEEEECCCCc--eeee
Q 000707 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGD-RSGNIRWWDVTTGH--SSQF 790 (1341)
Q Consensus 717 ~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs-~DgtI~lWDl~tg~--~~~l 790 (1341)
.+.||+.+.||++|+||++...-....+.-|. ......-++| |-+++|+-. ....|.+-|++.-. ...+
T Consensus 209 ~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-----~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 209 RDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-----PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred cceEEEecCCCcEEEEEecccccceEEecCCC-----CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 46899999999999999954321110111111 1124667888 556777643 34568899997643 5778
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCc--cccccccCCCCCCcEEEEEEcCCCCCCCCCeEEE
Q 000707 791 STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDP--LANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLC 868 (1341)
Q Consensus 791 ~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~--l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~La 868 (1341)
.+|++.|..|+|.|... ..|+++++|..+-|||+.+.-. +...++ .-..++.|..+.|++. .+-+++
T Consensus 284 ~~H~a~VNgIaWaPhS~-----~hictaGDD~qaliWDl~q~~~~~~~dPil-ay~a~~EVNqi~Ws~~-----~~Dwia 352 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSS-----SHICTAGDDCQALIWDLQQMPRENGEDPIL-AYTAGGEVNQIQWSSS-----QPDWIA 352 (364)
T ss_pred hcCcccccceEecCCCC-----ceeeecCCcceEEEEecccccccCCCCchh-hhhccceeeeeeeccc-----CCCEEE
Confidence 99999999999999843 6899999999999999976431 111110 1113478999999986 333665
Q ss_pred EEECCCcEEEE
Q 000707 869 IAGADSSFRLI 879 (1341)
Q Consensus 869 s~s~DgtIrvW 879 (1341)
.+ .++++.+.
T Consensus 353 i~-~~kkleiL 362 (364)
T KOG0290|consen 353 IC-FGKKLEIL 362 (364)
T ss_pred EE-ecCeeeEE
Confidence 44 44555443
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.32 E-value=7.3e-10 Score=130.75 Aligned_cols=244 Identities=11% Similarity=0.030 Sum_probs=151.1
Q ss_pred CCCceEeCCCC-eEEEE--cCCeEEEEeCC-Ccce--eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCC
Q 000707 26 NFGSADLSPSG-LLAFA--SGSSISILDSR-SLQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~g--s~~~V~v~d~~-~~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1341)
+...+.+||+| .|+.+ .++.|.+|+.. ++++ +.... ..+ ....++|+|+
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~-----------~p~~i~~~~~------------- 90 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPG-----------SPTHISTDHQ------------- 90 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCC-----------CceEEEECCC-------------
Confidence 46689999998 44333 35788899886 3432 22221 111 4567888876
Q ss_pred CCcEEEEEe-CCCcEEEEeCCC-Ce---EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-
Q 000707 100 SHLLLAAAD-RHGRVALLDFRL-RS---VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW- 173 (1341)
Q Consensus 100 ~g~~LASg~-~dG~I~vWDv~t-g~---~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~- 173 (1341)
|++|++++ .++.|.+||+.+ |. .+..+ .+. . ....++++|++. .++++...++.|.+||+.+...+.
T Consensus 91 -g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~-~-~~~~~~~~p~g~--~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 91 -GRFLFSASYNANCVSVSPLDKDGIPVAPIQII--EGL-E-GCHSANIDPDNR--TLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred -CCEEEEEEcCCCeEEEEEECCCCCCCCceeec--cCC-C-cccEeEeCCCCC--EEEEeeCCCCEEEEEEECCCCcccc
Confidence 46666665 589999999964 32 22221 222 2 466788999872 455666678999999997632221
Q ss_pred ------EEeCCCCceEEEEEcCCCCCEEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCC
Q 000707 174 ------KYDASPEYLSCIRRNPFDARHFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLS 246 (1341)
Q Consensus 174 ------~~~~~~~~v~~~~fsP~d~~~la~~~~-dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~ 246 (1341)
.... ......++|+| |++++.++.. ++.|.+||+......-...+.+. . .
T Consensus 164 ~~~~~~~~~~-g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~------------~---------~ 220 (330)
T PRK11028 164 QEPAEVTTVE-GAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD------------M---------M 220 (330)
T ss_pred cCCCceecCC-CCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe------------c---------C
Confidence 1111 23356789999 8998877755 89999999863211000011110 0 0
Q ss_pred CCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCc----eeEEEecCCCccceEEEEEcCCCCEEEEEec-CCc
Q 000707 247 PASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYET----PLFSAALPRGCAKFLDVLADPNNDLLYCAHL-DGK 320 (1341)
Q Consensus 247 p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~----~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~-Dgt 320 (1341)
|.....+.+...+.|+|||+.++++. .++.|.+||++... .+..+... .....+.++|||++||++.. +++
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEEccCCc
Confidence 10001122344578999999888875 47899999996432 23332221 12335678899999998876 899
Q ss_pred EEEEecc
Q 000707 321 LSIWRRK 327 (1341)
Q Consensus 321 I~lW~~~ 327 (1341)
|.+|++.
T Consensus 298 v~v~~~~ 304 (330)
T PRK11028 298 ISVYEID 304 (330)
T ss_pred EEEEEEc
Confidence 9999874
No 193
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.32 E-value=3.4e-11 Score=128.66 Aligned_cols=252 Identities=14% Similarity=0.145 Sum_probs=168.6
Q ss_pred cccCCCCCCCCCCceEeCCCCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCC
Q 000707 16 FMLPGPPSRNNFGSADLSPSGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1341)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~gllA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1341)
|.|. +|-..++++-|-.++.|..| ..+.|.+|+..+...+..+.+|.. -+|+.++-.|+
T Consensus 8 fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~----------~~it~lq~~p~-------- 67 (323)
T KOG0322|consen 8 FVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGR----------LFITNLQSIPN-------- 67 (323)
T ss_pred eEec--cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhcc----------ceeeceeecCC--------
Confidence 5666 35667899999888865556 457999999999998888885443 18999988875
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEE------------ec-------------CCC------------------
Q 000707 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLW------------ID-------------PDP------------------ 131 (1341)
Q Consensus 95 ~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~------------l~-------------~~~------------------ 131 (1341)
..|.+-++|+++.+|++.-+..+.. +. .++
T Consensus 68 -------d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~ 140 (323)
T KOG0322|consen 68 -------DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQ 140 (323)
T ss_pred -------cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeE
Confidence 3578889999999999866331110 00 000
Q ss_pred --------CCCCCeeEEEEeecCCCc-cEEEEEeCCCeEEEEECCCCeEEEEE----------eCCCCceEEEEEcCCCC
Q 000707 132 --------NPKLGIQDLCWIVSKPDS-FVLAAINGPSVLSLYNTTSASCMWKY----------DASPEYLSCIRRNPFDA 192 (1341)
Q Consensus 132 --------h~~~~V~~l~wsp~~~~~-~lLas~s~d~~i~lWd~~tg~~i~~~----------~~~~~~v~~~~fsP~d~ 192 (1341)
..+ .|.+..|-.. ..+ -+|++|.++|.+.+||+.+|+.+-.+ ..|.+++.++.|++. -
T Consensus 141 i~dd~~~~Klg-svmc~~~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~ 217 (323)
T KOG0322|consen 141 IADDSERSKLG-SVMCQDKDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-C 217 (323)
T ss_pred ccCchhccccC-ceeeeecccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-h
Confidence 001 2333332211 112 57788889999999999998654332 234668888888772 2
Q ss_pred CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000707 193 RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1341)
Q Consensus 193 ~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~ 272 (1341)
.+=+.+|.+-.+..|.+.-....-...++.. ++ .| .+..+..-||++-+++++
T Consensus 218 ~rGisgga~dkl~~~Sl~~s~gslq~~~e~~----------lk----------np-------Gv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 218 DRGISGGADDKLVMYSLNHSTGSLQIRKEIT----------LK----------NP-------GVSGVRIRPDGKILATAG 270 (323)
T ss_pred cCCcCCCccccceeeeeccccCcccccceEE----------ec----------CC-------CccceEEccCCcEEeecc
Confidence 3333444444444443321100000001110 11 11 244567889999999999
Q ss_pred cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEec
Q 000707 273 FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRR 326 (1341)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~ 326 (1341)
.|+.|+||...+.+++.++..|+ +.+..++|+||-..+|.++.|++|.||+.
T Consensus 271 WD~RiRVyswrtl~pLAVLkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 271 WDHRIRVYSWRTLNPLAVLKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEEEEeccCCchhhhhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999887664 77889999999999999999999999974
No 194
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=141.38 Aligned_cols=244 Identities=14% Similarity=0.151 Sum_probs=161.2
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEcCC-eEEEEeCCCcceeEeec-CCCCCCCCCCCCCCCcEEEEEEccCCCccccC
Q 000707 17 MLPGPPSRNNFGSADLSPSG-LLAFASGS-SISILDSRSLQLISTIP-IPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs~~-~V~v~d~~~~~~~~~l~-~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1341)
-|.| |...|+|++|+.+| +||+|++. .+.|||+...++++.+. ||++ .|-+++|-|..
T Consensus 45 eL~G--H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHta-----------NIFsvKFvP~t------ 105 (758)
T KOG1310|consen 45 ELTG--HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTA-----------NIFSVKFVPYT------ 105 (758)
T ss_pred hhcc--ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccccc-----------ceeEEeeeccC------
Confidence 4677 77889999999999 99999975 88999999988877665 8998 99999999973
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCC--------eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEE
Q 000707 94 STEPGSSHLLLAAADRHGRVALLDFRLR--------SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1341)
Q Consensus 94 s~~~~p~g~~LASg~~dG~I~vWDv~tg--------~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1341)
+.++++||..|..|+|.|+..- -.....-...|+. .|.-|+=.|+++ ..+-++++||+|+-+|
T Consensus 106 ------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-rVKria~~p~~P--htfwsasEDGtirQyD 176 (758)
T KOG1310|consen 106 ------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-RVKRIATAPNGP--HTFWSASEDGTIRQYD 176 (758)
T ss_pred ------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhh-hhhheecCCCCC--ceEEEecCCcceeeec
Confidence 5689999999999999999741 1111211345666 788888778764 7888999999999999
Q ss_pred CCCCe-EEEEE-------eCCCC--ceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCccc-ceeee-eEEEecCcchhhh
Q 000707 166 TTSAS-CMWKY-------DASPE--YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKED-EVVVK-ELQIQTDCTELLK 233 (1341)
Q Consensus 166 ~~tg~-~i~~~-------~~~~~--~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~-~~~~k-~~~i~~~~~~l~~ 233 (1341)
.+... |-... ..+.. ...|+..+|.++..|++|+.|-+.+++|..-.-+. ...++ ...-..+.+...-
T Consensus 177 iREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~y 256 (758)
T KOG1310|consen 177 IREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRY 256 (758)
T ss_pred ccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhe
Confidence 97432 11001 11111 34699999999999999999999999983210000 00000 0000000000000
Q ss_pred hh-hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEe
Q 000707 234 LE-RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAA 292 (1341)
Q Consensus 234 l~-~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~ 292 (1341)
.. .+.-...+ ....-..-+.-++|+|+|..++..-..-.|.+||+..++.....-
T Consensus 257 f~p~hlkn~~g----n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 257 FSPGHLKNSQG----NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred ecCccccCccc----ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 00000000 000001124467999999998888777889999999887654443
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=1.7e-10 Score=121.85 Aligned_cols=137 Identities=17% Similarity=0.260 Sum_probs=101.2
Q ss_pred CCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceee-e--c
Q 000707 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQ-F--S 791 (1341)
Q Consensus 717 ~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~-l--~ 791 (1341)
...+.+++.|+.++-||++..+++. .+.||+..|.+++- ....+.+|+.||++|+||.++++..+ + .
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r--------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQR--------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEE--------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 3456778899999999998777642 24589999999988 44579999999999999999987432 2 1
Q ss_pred --------cCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCC
Q 000707 792 --------THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKND 863 (1341)
Q Consensus 792 --------gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~ 863 (1341)
.-..+|.+++-+.+ . .+++....+.+|.++..++. ..+ +. .++|..++|..+
T Consensus 198 k~~~~lRp~~g~wigala~~ed--------W-lvCGgGp~lslwhLrsse~t-~vf--pi--pa~v~~v~F~~d------ 257 (325)
T KOG0649|consen 198 KNPNLLRPDWGKWIGALAVNED--------W-LVCGGGPKLSLWHLRSSEST-CVF--PI--PARVHLVDFVDD------ 257 (325)
T ss_pred cChhhcCcccCceeEEEeccCc--------e-EEecCCCceeEEeccCCCce-EEE--ec--ccceeEeeeecc------
Confidence 12356777776544 3 45556777999999998853 222 11 257889999865
Q ss_pred CeEEEEEECCCcEEEEEccC
Q 000707 864 PLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 864 ~~~Las~s~DgtIrvWdv~~ 883 (1341)
.+++++..+.+.-|.+.-
T Consensus 258 --~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 258 --CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred --eEEEeccccceeeeeecc
Confidence 567888889999998764
No 196
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=137.91 Aligned_cols=266 Identities=16% Similarity=0.162 Sum_probs=190.7
Q ss_pred CCCCCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEe-ecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCC
Q 000707 23 SRNNFGSADLSPSG-LLAFASG-SSISILDSRSLQLIST-IPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs~-~~V~v~d~~~~~~~~~-l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1341)
|...|+.+-|+..| .|++|++ -.|++||=.+++.+.. -.||.. .|-.-+|-|..
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~-----------NvfQaKFiP~s------------ 197 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCN-----------NVFQAKFIPFS------------ 197 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCccccccccccc-----------chhhhhccCCC------------
Confidence 66789999999988 8999987 4899999877766443 457887 88889999974
Q ss_pred CCcEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE---
Q 000707 100 SHLLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY--- 175 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv-~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~--- 175 (1341)
+.+.+++.+.||.|++=.+ .+|.+..+--+-.|.+ +|.-++--|+.+ .-+.++++|+.+.-.|+.++.+--++
T Consensus 198 ~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr 274 (559)
T KOG1334|consen 198 GDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-PVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCR 274 (559)
T ss_pred CCcCceeccccCceeeeeeccccceecceecccccC-ccceeeecCCCC--CcccccccccceeeeeeccCCccceeeee
Confidence 4678999999999999876 4555543332456778 999999988764 78889999999999998877643222
Q ss_pred eCCCC---ceEEEEEcCCCCCEEEEEeCCCeEEEEEecC-Ccccce-eeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000707 176 DASPE---YLSCIRRNPFDARHFCVLGLKGLLLSVRVLG-QKEDEV-VVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1341)
Q Consensus 176 ~~~~~---~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~-~~~~~~-~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1341)
..... .+..++.+|.....+|+++.|.+++++|... +..... ..+++.- .+ ...
T Consensus 275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p-----------~h----------l~~ 333 (559)
T KOG1334|consen 275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCP-----------HH----------LVE 333 (559)
T ss_pred ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCC-----------cc----------ccc
Confidence 12111 4578999998888999999999999988533 110000 0111110 00 011
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCce------------eE-EEecCCCccceEEEEE-cCCCCEEEEEe
Q 000707 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETP------------LF-SAALPRGCAKFLDVLA-DPNNDLLYCAH 316 (1341)
Q Consensus 251 ~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~------------l~-~~~l~~~~~~~~~v~~-~pdg~~L~s~~ 316 (1341)
..+..|..++|+.++..+++.-.|-.|++|.-..+.- +. ++..|++...+-.|-| .|...++++|+
T Consensus 334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS 413 (559)
T KOG1334|consen 334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS 413 (559)
T ss_pred cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence 2344577889999998888888899999996654321 22 2444555545555544 68889999999
Q ss_pred cCCcEEEEeccCCceeeee
Q 000707 317 LDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 317 ~DgtI~lW~~~~g~~~~~~ 335 (1341)
.-|.|-||++++++.++.|
T Consensus 414 DCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 414 DCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred ccceEEEEecchhHHHHHh
Confidence 9999999999998866554
No 197
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.28 E-value=2.8e-10 Score=127.47 Aligned_cols=125 Identities=12% Similarity=0.148 Sum_probs=107.4
Q ss_pred CCCCCCceEeCCCC--eEEEEcC-CeEEEEeCCCc-------ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 23 SRNNFGSADLSPSG--LLAFASG-SSISILDSRSL-------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g--llA~gs~-~~V~v~d~~~~-------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
|+.+|--++|.|-+ .||+|+. ++|.||++... ..+..|.||.. .|.-|+|+|--
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----------rVg~V~wHPtA----- 143 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----------RVGLVQWHPTA----- 143 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-----------eEEEEeecccc-----
Confidence 66777889999954 8999985 68999997543 23678999998 99999999963
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEE
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM 172 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i 172 (1341)
...|+|++.|.+|.|||+.+|+.+..+. |.. -|++++|+.+| .+|++...|..|+|||.++|+.+
T Consensus 144 --------~NVLlsag~Dn~v~iWnv~tgeali~l~---hpd-~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 144 --------PNVLLSAGSDNTVSIWNVGTGEALITLD---HPD-MVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVV 208 (472)
T ss_pred --------hhhHhhccCCceEEEEeccCCceeeecC---CCC-eEEEEEeccCC---ceeeeecccceeEEEcCCCCcEe
Confidence 4679999999999999999999888753 777 89999999987 79999999999999999999999
Q ss_pred EEEeCC
Q 000707 173 WKYDAS 178 (1341)
Q Consensus 173 ~~~~~~ 178 (1341)
+....|
T Consensus 209 ~e~~~h 214 (472)
T KOG0303|consen 209 SEGVAH 214 (472)
T ss_pred eecccc
Confidence 876554
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.28 E-value=6.4e-10 Score=138.94 Aligned_cols=188 Identities=11% Similarity=0.136 Sum_probs=125.7
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCC-----C--eEEEEEeCCCCceEEEEEc
Q 000707 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS-----A--SCMWKYDASPEYLSCIRRN 188 (1341)
Q Consensus 116 WDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t-----g--~~i~~~~~~~~~v~~~~fs 188 (1341)
|+. .|..+.. +..|+. .|..++-++.. +.+++|++.||+|++||... | ++..++......+.++.+-
T Consensus 1034 W~p-~G~lVAh--L~Ehs~-~v~k~a~s~~~--~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~ 1107 (1431)
T KOG1240|consen 1034 WNP-RGILVAH--LHEHSS-AVIKLAVSSEH--TSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMC 1107 (1431)
T ss_pred CCc-cceEeeh--hhhccc-cccceeecCCC--CceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEec
Confidence 776 4666666 467777 78888887754 37999999999999999762 1 2233344334678888887
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE-EEccCCC-
Q 000707 189 PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF-TFSPHWR- 266 (1341)
Q Consensus 189 P~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~-afSpdg~- 266 (1341)
+ .+..+|+++.||.|.+.++.-- ..++..+.. .+. |. ....+.+++| +|..+-+
T Consensus 1108 ~-~~~~~Av~t~DG~v~~~~id~~-----~~~~~~~~~-----~ri------------~n-~~~~g~vv~m~a~~~~~~S 1163 (1431)
T KOG1240|consen 1108 G-NGDQFAVSTKDGSVRVLRIDHY-----NVSKRVATQ-----VRI------------PN-LKKDGVVVSMHAFTAIVQS 1163 (1431)
T ss_pred c-CCCeEEEEcCCCeEEEEEcccc-----ccccceeee-----eec------------cc-ccCCCceEEeecccccccc
Confidence 7 8899999999999999765321 011111100 000 00 0011112222 4433322
Q ss_pred -ceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceee
Q 000707 267 -HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVH 333 (1341)
Q Consensus 267 -~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~ 333 (1341)
.++++..-+.|..||+.+.....++...-.++.+.+++.+|-+.+++.|..-|.+-+||.+=+..+.
T Consensus 1164 ~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1164 HVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred eeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceee
Confidence 5677777789999999988776666554445778889999999999999999999999998665443
No 199
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.2e-10 Score=140.11 Aligned_cols=207 Identities=16% Similarity=0.171 Sum_probs=134.0
Q ss_pred ccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECC---CcEEEEeccCCCce--eeeccCceEEEEEc
Q 000707 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD---APVEVWAMTKNPIM--LRSLALPFTVLEWT 662 (1341)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D---~~I~vWDl~~t~~~--l~~l~~~v~~l~ws 662 (1341)
.+.+|++||...+.. +.+.. +...+...+|||||++|+.++.+ ..|.+||+ .+++. +..+.......+|+
T Consensus 182 ~~~~i~i~d~dg~~~---~~lt~-~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 182 QPYEVRVADYDGFNQ---FIVNR-SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred ceEEEEEECCCCCCc---eEecc-CCCccccceEcCCCCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCccCceeEC
Confidence 346899999865442 22333 55688999999999999988754 36999999 56642 33333333456777
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEe-cCCcEEEE--EecCCee
Q 000707 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVF--EVHGRRI 739 (1341)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg~I~vw--dv~~~~v 739 (1341)
|+ +..++++. .+|.+.+| |+++..+
T Consensus 257 PD----------------------------------------------------G~~La~~~~~~g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 257 PD----------------------------------------------------GSRLAFASSKDGVLNIYVMGANGGTP 284 (429)
T ss_pred CC----------------------------------------------------CCEEEEEEecCCcEEEEEEECCCCCe
Confidence 65 35566654 67776655 5555444
Q ss_pred ecccCCCCCCccccccceEEEEee--cCCEEEEE-eCCCcEEEEECCC--CceeeeccCCCcEEEEEEccCCCCCCCCCE
Q 000707 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG-DRSGNIRWWDVTT--GHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasG-s~DgtI~lWDl~t--g~~~~l~gH~~~V~~V~fSP~~~gd~~~~~ 814 (1341)
+.+ +.+...+...+| ||+.|+.. +.+|...+|++.. +....+ +|.+ ....|||+ | ++
T Consensus 285 ~~l---------t~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpD--G----~~ 346 (429)
T PRK01742 285 SQL---------TSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISAD--G----KT 346 (429)
T ss_pred Eee---------ccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCC--C----CE
Confidence 321 123344566777 89877654 4688899998754 333333 4544 46789999 5 67
Q ss_pred EEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 815 IAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 815 Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
|+..+.++ +.+||+.+++.. .+..++ ...++.|+|+ |+ .|+.++.||.+++|.+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~--~lt~~~----~~~~~~~sPd----G~--~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTE--VLSSTF----LDESPSISPN----GI--MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeE--EecCCC----CCCCceECCC----CC--EEEEEEcCCCceEEEEE
Confidence 88777766 556999887632 121111 2346789998 55 67888899999999864
No 200
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.26 E-value=9.9e-10 Score=134.56 Aligned_cols=282 Identities=17% Similarity=0.241 Sum_probs=172.4
Q ss_pred CCcEEEEeCCCC-cEEEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCCcee---eeEEeccCC
Q 000707 538 SGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINR---AFRVLQKPE 612 (1341)
Q Consensus 538 DGtI~lWDl~tg-~~~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~---~l~~l~~~~ 612 (1341)
++.+.|||+... .....+ .-...|+++.|.|.. .++. .|.++|.|.+||++.+..+ .+......|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~---------gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh 290 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLA---------GGCYNGQVVLWDLRKGSDTPPSGLSALEVSH 290 (555)
T ss_pred CceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEE---------eeccCceEEEEEccCCCCCCCcccccccccC
Confidence 348999999876 222222 234789999999865 3443 3556789999999876532 222223458
Q ss_pred CCCeEEEEECCCC--CEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccC
Q 000707 613 RAPIRALRASSSG--RYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTT 690 (1341)
Q Consensus 613 ~~~I~~i~~SpdG--~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~ 690 (1341)
..++..+.|-.+- .-+++++.||.|..|++ +.-.+ |+-.+.-.+. .. .++. ..+..+
T Consensus 291 ~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~-~~l~~------P~e~~~~~~~--~~------~~~~--~~~~~~---- 349 (555)
T KOG1587|consen 291 SEPVTAVVWLQNEHNTEFFSLSSDGSICSWDT-DMLSL------PVEGLLLESK--KH------KGQQ--SSKAVG---- 349 (555)
T ss_pred CcCeEEEEEeccCCCCceEEEecCCcEeeeec-ccccc------chhhcccccc--cc------cccc--cccccc----
Confidence 8899999987654 44999999999999998 33211 1000000000 00 0000 000000
Q ss_pred CCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCC-ccccccceEEEEee---cCC
Q 000707 691 DGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSS-SFISSDGLITAMAY---RLP 766 (1341)
Q Consensus 691 ~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~-~l~~~~~~v~sla~---dg~ 766 (1341)
............+|++|..+|.|..-+-.|.+... ...+.+. .+..|.+.|.++.+ --+
T Consensus 350 ----------------~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~-~~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 350 ----------------ATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP-EVSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ----------------eeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc-cccccccccccccCcceEeeecCCCccc
Confidence 00000011234679999999999875544433211 0000111 23457788999988 223
Q ss_pred EEEEEeCCCcEEEEECCCC-c-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC--ccccccccC
Q 000707 767 HVVMGDRSGNIRWWDVTTG-H-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD--PLANSLLQP 842 (1341)
Q Consensus 767 ~LasGs~DgtI~lWDl~tg-~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~--~l~~~l~~g 842 (1341)
.+.+++ |-++++|.-... . +..+.-+...|++++|||..+ ..+|++..||.|.|||+.... |+.... .
T Consensus 413 ~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp-----avF~~~d~~G~l~iWDLl~~~~~Pv~s~~--~ 484 (555)
T KOG1587|consen 413 NFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP-----AVFATVDGDGNLDIWDLLQDDEEPVLSQK--V 484 (555)
T ss_pred eeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc-----eEEEEEcCCCceehhhhhccccCCccccc--c
Confidence 444444 999999998732 2 556677888899999999965 478888899999999997554 221111 1
Q ss_pred CCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 843 QFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 843 h~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
+ .....-+-|++. ++ .|+.|...|++.+|++..
T Consensus 485 ~--~~~l~~~~~s~~----g~--~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 C--SPALTRVRWSPN----GK--LLAVGDANGTTHILKLSE 517 (555)
T ss_pred c--ccccceeecCCC----Cc--EEEEecCCCcEEEEEcCc
Confidence 1 233456777775 44 689999999999999974
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.25 E-value=1.2e-09 Score=133.90 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=155.8
Q ss_pred eEEEEeCCCc-ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE
Q 000707 45 SISILDSRSL-QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV 123 (1341)
Q Consensus 45 ~V~v~d~~~~-~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~ 123 (1341)
.+.||+..+. ..-.++.-. +.|++++|+|.. ..+||.|..+|.|.+||++.+..
T Consensus 223 ~~~vW~~~~p~~Pe~~~~~~------------s~v~~~~f~p~~-------------p~ll~gG~y~GqV~lWD~~~~~~ 277 (555)
T KOG1587|consen 223 VLLVWSLKNPNTPELVLESP------------SEVTCLKFCPFD-------------PNLLAGGCYNGQVVLWDLRKGSD 277 (555)
T ss_pred eEEEEecCCCCCceEEEecC------------CceeEEEeccCC-------------cceEEeeccCceEEEEEccCCCC
Confidence 4678887664 333333322 379999999974 67899999999999999987754
Q ss_pred --EEEec--CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE-E-----EEE-----e-CCCCceEEEEE
Q 000707 124 --VLWID--PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-M-----WKY-----D-ASPEYLSCIRR 187 (1341)
Q Consensus 124 --~~~l~--~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i-----~~~-----~-~~~~~v~~~~f 187 (1341)
...+. ...|.. +|..+.|..+... .-+++++.||.|..|+++-=.. . -.. . ...-.++++.|
T Consensus 278 ~~~s~ls~~~~sh~~-~v~~vvW~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F 355 (555)
T KOG1587|consen 278 TPPSGLSALEVSHSE-PVTAVVWLQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKF 355 (555)
T ss_pred CCCcccccccccCCc-CeEEEEEeccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEee
Confidence 22221 245777 9999999987533 4577888899999999862111 0 000 0 11235689999
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000707 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1341)
Q Consensus 188 sP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~ 267 (1341)
.|.++.+|.+|+..|.|+.-.-.+..+... .. .+.+ .....+.+.+..+.++|=+..
T Consensus 356 ~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~--~~------------~~~~---------~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 356 EPTDPNHFIVGTEEGKVYKGCRKGYTPAPE--VS------------YKGH---------STFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred ccCCCceEEEEcCCcEEEEEeccCCccccc--cc------------cccc---------ccccccCcceEeeecCCCccc
Confidence 999999999999999998733222100000 00 0000 001123344667789998887
Q ss_pred eEEEEcCCeEEEEEcC-CCceeEEEecCCCccceEEEEEcCCCC-EEEEEecCCcEEEEecc
Q 000707 268 IIFVTFPRELVVFDLQ-YETPLFSAALPRGCAKFLDVLADPNND-LLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 268 l~~~~~d~~I~iwDl~-t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~~DgtI~lW~~~ 327 (1341)
++..+.|-+|+||.-. ...++- ........+.++++||-+. ++|++..||.|-|||..
T Consensus 413 ~fls~gDW~vriWs~~~~~~Pl~--~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASPLL--SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eeeeeccceeEeccccCCCCcch--hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 7777779999999988 444442 2344455588899999776 77788889999999985
No 202
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=6.1e-11 Score=138.28 Aligned_cols=260 Identities=17% Similarity=0.154 Sum_probs=173.8
Q ss_pred ccccccccCCCCCCCCCCceEeCCCC-eEEEEc-CCeEEEEeCC--------CcceeEeecCCCCCCCCCCCCCCCcEEE
Q 000707 11 SWDCNFMLPGPPSRNNFGSADLSPSG-LLAFAS-GSSISILDSR--------SLQLISTIPIPPPTSAGSVASLSPFVTA 80 (1341)
Q Consensus 11 ~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~--------~~~~~~~l~~H~~~~~~~~~~~~~~Vt~ 80 (1341)
.|.=+++|-. |-+.+.+..+.|.- .|++++ ++.+.+|+.+ ..+.+.+|.+|.+ +|-|
T Consensus 283 ~w~ik~tl~s--~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-----------PVl~ 349 (577)
T KOG0642|consen 283 KWNIKFTLRS--HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-----------PVLC 349 (577)
T ss_pred ecceeeeeec--chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-----------ceEE
Confidence 4887776665 66778888998864 788886 5688999982 2356889999999 9999
Q ss_pred EEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC------CC---eEEEEecCCCCCCCCeeEEEEeecCCCccE
Q 000707 81 VKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR------LR---SVVLWIDPDPNPKLGIQDLCWIVSKPDSFV 151 (1341)
Q Consensus 81 v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~------tg---~~~~~l~~~~h~~~~V~~l~wsp~~~~~~l 151 (1341)
|..++. +..+.||+.||+|+.|++- +. ..+.. .+.||++ .|..++++... +.
T Consensus 350 v~v~~n--------------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~-~l~Ghtd-avw~l~~s~~~---~~ 410 (577)
T KOG0642|consen 350 VVVPSN--------------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSG-TLLGHTD-AVWLLALSSTK---DR 410 (577)
T ss_pred EEecCC--------------ceEEEeeccCceeeeeccCCCCCcccccCcchhcc-ceecccc-ceeeeeecccc---cc
Confidence 999875 5779999999999999542 11 12222 1578999 99999999876 67
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEEeCC--CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcc
Q 000707 152 LAAINGPSVLSLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCT 229 (1341)
Q Consensus 152 Las~s~d~~i~lWd~~tg~~i~~~~~~--~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~ 229 (1341)
|++++.||++++|+.....+ .++... .+.-.++.|--.+..+..+. ..+...++... .+...+.+
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s---~~~~~~~~~~~----ev~s~~~~----- 477 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLAS---FRFGYTSIDDM----EVVSDLLI----- 477 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhh---cccccccchhh----hhhhheee-----
Confidence 99999999999999865554 222221 22334454433222222222 22222111000 00111111
Q ss_pred hhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCC
Q 000707 230 ELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN 309 (1341)
Q Consensus 230 ~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg 309 (1341)
+. .+ +.|... ....+..+.-+|.....+++..|+.|+++|-.++..+.....+ ...+.+++..|+|
T Consensus 478 ----~~-----s~--~~~~~~-~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~--~~svtslai~~ng 543 (577)
T KOG0642|consen 478 ----FE-----SS--ASPGPR-RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH--KDSVTSLAIDPNG 543 (577)
T ss_pred ----cc-----cc--CCCccc-ccCccceEEecCCCCeeEecccCCceecccccccccchheeec--cceecceeecCCC
Confidence 00 00 011110 1123556677888877788889999999999999998766543 4678889999999
Q ss_pred CEEEEEecCCcEEEEeccCC
Q 000707 310 DLLYCAHLDGKLSIWRRKEG 329 (1341)
Q Consensus 310 ~~L~s~~~DgtI~lW~~~~g 329 (1341)
-+|.+++.|++|++|.....
T Consensus 544 ~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 544 PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ceEEeecCCceeehhhccch
Confidence 99999999999999987643
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.1e-09 Score=121.83 Aligned_cols=250 Identities=10% Similarity=0.039 Sum_probs=175.9
Q ss_pred CCCCCCceEeCCCC-eEEEEcCC-eEEEEeCC------CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCC
Q 000707 23 SRNNFGSADLSPSG-LLAFASGS-SISILDSR------SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLS 94 (1341)
Q Consensus 23 ~~~~~~a~~~s~~g-llA~gs~~-~V~v~d~~------~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s 94 (1341)
|...++|+.||.+| .||+|.+. .++||... ..+.++....|.. +.|-|++|--.+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~----------SNIF~L~F~~~N------- 117 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHR----------SNIFSLEFDLEN------- 117 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccc----------cceEEEEEccCC-------
Confidence 56678999999988 89998764 89999974 4566776554442 289999998653
Q ss_pred CCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC----e
Q 000707 95 TEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA----S 170 (1341)
Q Consensus 95 ~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg----~ 170 (1341)
+.|.||..+|+|++.|+.+.+.+..+......+ .|+.|.-+|.. .+|++.+.++.|.+||.+.. .
T Consensus 118 -------~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~D---N~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 118 -------RFLYSGERWGTVIKHDIETKQSIYVANENNNRG-DVYHMDQHPTD---NTLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred -------eeEecCCCcceeEeeecccceeeeeecccCccc-ceeecccCCCC---ceEEEEecCceEEEEeccCCCCCCc
Confidence 789999999999999999999888775555555 89999999975 79999999999999998733 2
Q ss_pred EEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCC
Q 000707 171 CMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASG 250 (1341)
Q Consensus 171 ~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~ 250 (1341)
++. .......+.++-|+|-.++.|++.+..|-+-+||..-+.. .+.+.... . + ..
T Consensus 187 ~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~---------------~~~~~~~~--~--~-----L~ 241 (609)
T KOG4227|consen 187 LVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQAR---------------PVYQRSMF--K--G-----LP 241 (609)
T ss_pred eee-ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccc---------------hHHhhhcc--c--c-----Cc
Confidence 322 2233567889999999999999999989899998533110 00000000 0 0 00
Q ss_pred cCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccc---e---EEEEEcCCCCEEEEEecCCcEEEE
Q 000707 251 LFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAK---F---LDVLADPNNDLLYCAHLDGKLSIW 324 (1341)
Q Consensus 251 ~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~---~---~~v~~~pdg~~L~s~~~DgtI~lW 324 (1341)
........+.|+|.|.++++.-...--.+||.-+.++. ++........ . -++.|. +...+++|+.|=.|.+|
T Consensus 242 ~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~-~D~~v~tGSD~~~i~~W 319 (609)
T KOG4227|consen 242 QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFI-DDYTVATGSDHWGIHIW 319 (609)
T ss_pred ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeee-cceeeeccCcccceEEE
Confidence 00112356689999999988877777788998875442 3333322211 1 222232 33358999999999999
Q ss_pred ecc
Q 000707 325 RRK 327 (1341)
Q Consensus 325 ~~~ 327 (1341)
.+.
T Consensus 320 klP 322 (609)
T KOG4227|consen 320 KLP 322 (609)
T ss_pred ecC
Confidence 874
No 204
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=3e-07 Score=111.07 Aligned_cols=106 Identities=24% Similarity=0.340 Sum_probs=79.1
Q ss_pred CCceEeCCCC-eEEEE-----cCCeEEEEeCCCcce--eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 27 FGSADLSPSG-LLAFA-----SGSSISILDSRSLQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~g-----s~~~V~v~d~~~~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
..-+.|+|.- ++|.+ .+++|-|+- .+|.. --+.+- .+++++|+|..
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~--------------hatSLCWHpe~----------- 71 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV--------------HATSLCWHPEE----------- 71 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce--------------ehhhhccChHH-----------
Confidence 4567899987 77755 367888873 23332 222222 46689999974
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1341)
..||+|=.-|.+-||...+.+.... ...|+. +|+.+.||++| ..|.+++..|.+.+|...
T Consensus 72 ---~vLa~gwe~g~~~v~~~~~~e~htv--~~th~a-~i~~l~wS~~G---~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 72 ---FVLAQGWEMGVSDVQKTNTTETHTV--VETHPA-PIQGLDWSHDG---TVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ---HHHhhccccceeEEEecCCceeeee--ccCCCC-CceeEEecCCC---CeEEEcCCCceeEEEEee
Confidence 5689999999999999877655433 345777 99999999988 899999999999999765
No 205
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=3.2e-09 Score=118.10 Aligned_cols=151 Identities=13% Similarity=0.180 Sum_probs=112.3
Q ss_pred CCceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 27 FGSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
+.-++|++.- -+|++ .+..|+|+|-.+ +....|+....+ .|++++|-|.+ +.-|
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQr----------nvtclawRPls-------------asel 156 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQR----------NVTCLAWRPLS-------------ASEL 156 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhc----------ceeEEEeccCC-------------ccee
Confidence 3468998754 34444 578999999877 555556655442 89999999975 5678
Q ss_pred EEEeCCCcEEEEeCCC-C---e--------EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe-CCCeEEEEECCCCeE
Q 000707 105 AAADRHGRVALLDFRL-R---S--------VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN-GPSVLSLYNTTSASC 171 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~t-g---~--------~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s-~d~~i~lWd~~tg~~ 171 (1341)
|.|...| |.||.... + + ....+..+|| . +|+.|+|.+|+ ..|++++ +|..|.|||+++|.+
T Consensus 157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~-pVtsmqwn~dg---t~l~tAS~gsssi~iWdpdtg~~ 230 (445)
T KOG2139|consen 157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-N-PVTSMQWNEDG---TILVTASFGSSSIMIWDPDTGQK 230 (445)
T ss_pred eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-c-eeeEEEEcCCC---CEEeecccCcceEEEEcCCCCCc
Confidence 9988766 88997632 1 1 1123334666 4 89999999987 5666654 578999999999987
Q ss_pred EEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 172 MWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 172 i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
+--...+.+.++-+.|+| |+..|.++..|+..++|.
T Consensus 231 ~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 231 IPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred ccccccCCCceeeEEEcC-CCCEEEEecccceeeeeh
Confidence 654444467788899999 999999999999999994
No 206
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=2.1e-09 Score=131.35 Aligned_cols=234 Identities=15% Similarity=0.124 Sum_probs=146.8
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEE
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~ 618 (1341)
..|.+||...+. .+.+..+...+...+|+|||+.+++.... . .+..+.+||+.+|+.+.+..+.+ .+..
T Consensus 179 ~~l~~~d~dg~~-~~~lt~~~~~~~~p~wSPDG~~la~~s~~----~--g~~~i~i~dl~~G~~~~l~~~~~----~~~~ 247 (429)
T PRK03629 179 YELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFE----S--GRSALVIQTLANGAVRQVASFPR----HNGA 247 (429)
T ss_pred eeEEEEcCCCCC-CEEeecCCCceeeeEEcCCCCEEEEEEec----C--CCcEEEEEECCCCCeEEccCCCC----CcCC
Confidence 369999986443 34555677789999999999766554321 1 13479999999987555543322 3456
Q ss_pred EEECCCCCEEEEE-ECCC--cEEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 619 LRASSSGRYLLIL-FRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 619 i~~SpdG~~Las~-s~D~--~I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
.+|||||++|+.. ..++ .|.+||+ +++...+.... .+....|+|+
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~-~tg~~~~lt~~~~~~~~~~wSPD----------------------------- 297 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDL-ASGQIRQVTDGRSNNTEPTWFPD----------------------------- 297 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEEC-CCCCEEEccCCCCCcCceEECCC-----------------------------
Confidence 8999999998865 4454 4888898 67655443221 2345667654
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEecC-Cc--EEEEEecCCeeecccCCCCCCccccccceEEEEe--ecCCEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFALAN-GA--LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMA--YRLPHV 768 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~D-g~--I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla--~dg~~L 768 (1341)
++.+++.+.+ |. |+++++++...+.+. +. + ......+ .||++|
T Consensus 298 -----------------------G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt--~~-----~--~~~~~~~~SpDG~~I 345 (429)
T PRK03629 298 -----------------------SQNLAYTSDQAGRPQVYKVNINGGAPQRIT--WE-----G--SQNQDADVSSDGKFM 345 (429)
T ss_pred -----------------------CCEEEEEeCCCCCceEEEEECCCCCeEEee--cC-----C--CCccCEEECCCCCEE
Confidence 3556665543 44 444455554433211 11 1 1122344 499998
Q ss_pred EEEeCC---CcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCe---EEEEECCCCCccccccccC
Q 000707 769 VMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNT---FSVFDLDSQDPLANSLLQP 842 (1341)
Q Consensus 769 asGs~D---gtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dgt---I~IWDl~~~~~l~~~l~~g 842 (1341)
+..+.+ ..|.+||+.+++.+.+.. ........|||| | ++|+.++.|+. +.+|+++.... ..+ .+
T Consensus 346 a~~~~~~g~~~I~~~dl~~g~~~~Lt~-~~~~~~p~~SpD--G----~~i~~~s~~~~~~~l~~~~~~G~~~--~~l-~~ 415 (429)
T PRK03629 346 VMVSSNGGQQHIAKQDLATGGVQVLTD-TFLDETPSIAPN--G----TMVIYSSSQGMGSVLNLVSTDGRFK--ARL-PA 415 (429)
T ss_pred EEEEccCCCceEEEEECCCCCeEEeCC-CCCCCCceECCC--C----CEEEEEEcCCCceEEEEEECCCCCe--EEC-cc
Confidence 876544 358899999888665542 223457889999 5 67888877764 67778865432 233 44
Q ss_pred CCCCCcEEEEEEcCC
Q 000707 843 QFPGTLVLELDWLPT 857 (1341)
Q Consensus 843 h~~~~~V~~l~ws~~ 857 (1341)
|. ..+.+.+|+|.
T Consensus 416 ~~--~~~~~p~Wsp~ 428 (429)
T PRK03629 416 TD--GQVKFPAWSPY 428 (429)
T ss_pred CC--CCcCCcccCCC
Confidence 43 46888999873
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=2.2e-10 Score=130.15 Aligned_cols=199 Identities=16% Similarity=0.125 Sum_probs=145.3
Q ss_pred CceEeCCCC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 28 GSADLSPSG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 28 ~a~~~s~~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
.+++++.+| ++|+| .+++++||+-.+++.+.....|.+ .|..+.|||| |.+||
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-----------eV~DL~FS~d--------------gk~la 202 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-----------EVKDLDFSPD--------------GKFLA 202 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcC-----------ccccceeCCC--------------CcEEE
Confidence 479999997 89887 578999999777888777888887 8999999986 58899
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCc-cEEEEEeC-CCeEEEEECCCCe-----EEEEEeCC
Q 000707 106 AADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAING-PSVLSLYNTTSAS-----CMWKYDAS 178 (1341)
Q Consensus 106 Sg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~s~-d~~i~lWd~~tg~-----~i~~~~~~ 178 (1341)
|-+.| ..+|||+++|..+++.+..+. +.-...+.|+.++... -+|++.-. -+.|++||+..-. +..+....
T Consensus 203 sig~d-~~~VW~~~~g~~~a~~t~~~k-~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 203 SIGAD-SARVWSVNTGAALARKTPFSK-DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred EecCC-ceEEEEeccCchhhhcCCccc-chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 99999 899999999988887642222 2256777888775332 34444433 3566666653111 11222233
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 179 ~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
.+.|++++.++ |++.+|.++.||.|.+++... .+.+++ ++ ..|...|..
T Consensus 281 ~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~-------lq~~~~---------vk--------------~aH~~~VT~ 329 (398)
T KOG0771|consen 281 FKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS-------LQRLQY---------VK--------------EAHLGFVTG 329 (398)
T ss_pred cCcceeEEEcC-CCcEEEEeccCCcEEEEEece-------eeeeEe---------eh--------------hhheeeeee
Confidence 56899999999 999999999999999987421 222221 01 224456889
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCC
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQY 284 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t 284 (1341)
++|+||.+.+++.+.+.++.|.-++-
T Consensus 330 ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 330 LTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEcCCcCcccccccCCceeEEEEee
Confidence 99999999999999999988777664
No 208
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.21 E-value=2.4e-08 Score=119.81 Aligned_cols=103 Identities=15% Similarity=0.081 Sum_probs=68.8
Q ss_pred eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEE
Q 000707 37 LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVAL 115 (1341)
Q Consensus 37 llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~v 115 (1341)
+||.+- .+.|.|||...+..+.-|..|.. .|--+.|-|...- ....|+.-....+|-+
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~-----------~~qdl~W~~~rd~----------Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSND-----------SVQDLCWVPARDD----------SRDVLLAIHGSSTLVL 139 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCc-----------chhheeeeeccCc----------chheeEEecCCcEEEE
Confidence 566664 47999999999888888888887 7889999876421 1134555556678999
Q ss_pred EeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEE
Q 000707 116 LDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYN 165 (1341)
Q Consensus 116 WDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd 165 (1341)
|+..+|+..-.. ...+. ...++.+.|-+ ++-+...+..|.+.+-+
T Consensus 140 wntdtG~k~Wk~--~ys~~-iLs~f~~DPfd--~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 140 WNTDTGEKFWKY--DYSHE-ILSCFRVDPFD--SRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred EEccCCceeecc--ccCCc-ceeeeeeCCCC--cceEEEEccCceEEEEe
Confidence 999999987653 22223 45556666654 34444445455555544
No 209
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.19 E-value=1.1e-09 Score=120.36 Aligned_cols=234 Identities=12% Similarity=0.095 Sum_probs=169.2
Q ss_pred CCceEeCCCC-eEEEEcCC-eEEEEeCCCc---ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCC
Q 000707 27 FGSADLSPSG-LLAFASGS-SISILDSRSL---QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~-~V~v~d~~~~---~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1341)
+.|-+|++|+ .+|.+..+ -|.|+..... +..++|..|.. .|++|.|+|. .
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-----------~vtgvdWap~--------------s 67 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-----------IVTGVDWAPK--------------S 67 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCc-----------ceeEEeecCC--------------C
Confidence 6799999998 78877654 7888876554 46899999998 8999999986 4
Q ss_pred cEEEEEeCCCcEEEEeC-CCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-----EE
Q 000707 102 LLLAAADRHGRVALLDF-RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-----KY 175 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv-~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-----~~ 175 (1341)
.+|++++.|....||.. ..|+...++.+..+.+ .++++.|+|.+ +.+|++++...|.+|-.+ ++.-| ..
T Consensus 68 nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNr-AAt~V~WsP~e---nkFAVgSgar~isVcy~E-~ENdWWVsKhik 142 (361)
T KOG1523|consen 68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR-AATCVKWSPKE---NKFAVGSGARLISVCYYE-QENDWWVSKHIK 142 (361)
T ss_pred CceeEccCCCCccccccCCCCeeccceeEEEecc-ceeeEeecCcC---ceEEeccCccEEEEEEEe-cccceehhhhhC
Confidence 78999999999999998 6666666655566666 89999999987 789999999999999875 33333 11
Q ss_pred eCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEec------CcchhhhhhhhhccccCCCCCCC
Q 000707 176 DASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQT------DCTELLKLERELSAGAASLSPAS 249 (1341)
Q Consensus 176 ~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~------~~~~l~~l~~~~~~~s~~~~p~~ 249 (1341)
.-....|.++.|.| ++-.+++++.|+..+++..- +|++.-.. ..-.+.+|..++.
T Consensus 143 kPirStv~sldWhp-nnVLlaaGs~D~k~rVfSay--------IK~Vdekpap~pWgsk~PFG~lm~E~~---------- 203 (361)
T KOG1523|consen 143 KPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAY--------IKGVDEKPAPTPWGSKMPFGQLMSEAS---------- 203 (361)
T ss_pred CccccceeeeeccC-CcceecccccCcceeEEEEe--------eeccccCCCCCCCccCCcHHHHHHhhc----------
Confidence 22256889999999 88899999999999886321 22221000 0001223333322
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCc-eeEEEecCCCccceEEEEEcCCCCEE
Q 000707 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYET-PLFSAALPRGCAKFLDVLADPNNDLL 312 (1341)
Q Consensus 250 ~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~-~l~~~~l~~~~~~~~~v~~~pdg~~L 312 (1341)
...+++..+.|+|+|..|+..+.|..+.+-|..... .+..+.. ..-|+.++.+..+...+
T Consensus 204 -~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~--~~lP~ls~~~ise~~vv 264 (361)
T KOG1523|consen 204 -SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVAT--AQLPLLSVSWISENSVV 264 (361)
T ss_pred -cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhh--ccCCceeeEeecCCcee
Confidence 234578899999999999999999999999988664 3333322 22567777665544433
No 210
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=6.8e-08 Score=115.18 Aligned_cols=340 Identities=11% Similarity=0.070 Sum_probs=183.7
Q ss_pred cEE-EEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc
Q 000707 150 FVL-AAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC 228 (1341)
Q Consensus 150 ~lL-as~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~ 228 (1341)
+++ ++-.+++.|.+.|..+.+.+.++......-..+.|+| |++++.+.+.||.|.++|+.... ..+++..
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~----~v~~i~~---- 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGK----VVATIKV---- 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSS----EEEEEE-----
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCccc----EEEEEec----
Confidence 444 4566789999999999999988876444434578999 99999999999999999975421 1233221
Q ss_pred chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEEecCCC-----ccceEE
Q 000707 229 TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRG-----CAKFLD 302 (1341)
Q Consensus 229 ~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~~~-----~~~~~~ 302 (1341)
-.....+++||||+.++.+. .++++.|+|.++.+.+..++.... .+.+..
T Consensus 77 ------------------------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~a 132 (369)
T PF02239_consen 77 ------------------------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAA 132 (369)
T ss_dssp ------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEE
T ss_pred ------------------------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCcee
Confidence 01245679999999998776 689999999999999988865421 234567
Q ss_pred EEEcCCCCEE-EEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCC
Q 000707 303 VLADPNNDLL-YCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPS 381 (1341)
Q Consensus 303 v~~~pdg~~L-~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~ 381 (1341)
+..+|.++.+ ++.=+-+.|.+-|......+..-. .. .+. .
T Consensus 133 Iv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~--i~----~g~-----~---------------------------- 173 (369)
T PF02239_consen 133 IVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT--IK----VGR-----F---------------------------- 173 (369)
T ss_dssp EEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE--EE------T-----T----------------------------
T ss_pred EEecCCCCEEEEEEccCCeEEEEEeccccccceee--ec----ccc-----c----------------------------
Confidence 7788888844 444444766555644332111100 00 000 0
Q ss_pred CccccCCCCccccccccccccEEEE-EEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCcCcccccc
Q 000707 382 ANVDIDSPFEFSDDTLLLSKTHLIS-ISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMASSADVQA 460 (1341)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~las-~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~~~~~~~~ 460 (1341)
+.++.. ++++++++. ...+..|-++|.++.+...... .|.... .+
T Consensus 174 -------~~D~~~---dpdgry~~va~~~sn~i~viD~~~~k~v~~i~----------------~g~~p~----~~---- 219 (369)
T PF02239_consen 174 -------PHDGGF---DPDGRYFLVAANGSNKIAVIDTKTGKLVALID----------------TGKKPH----PG---- 219 (369)
T ss_dssp -------EEEEEE----TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------------SSSBE----ET----
T ss_pred -------cccccc---CcccceeeecccccceeEEEeeccceEEEEee----------------cccccc----cc----
Confidence 111111 122555544 4466788899987654321100 010000 00
Q ss_pred cccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCc
Q 000707 461 LEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGA 540 (1341)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGt 540 (1341)
. ..+.-+--.+++++..- .+....+.-..+.
T Consensus 220 -------~------------------------~~~~php~~g~vw~~~~------------------~~~~~~~~ig~~~ 250 (369)
T PF02239_consen 220 -------P------------------------GANFPHPGFGPVWATSG------------------LGYFAIPLIGTDP 250 (369)
T ss_dssp -------T------------------------EEEEEETTTEEEEEEEB------------------SSSSEEEEEE--T
T ss_pred -------c------------------------cccccCCCcceEEeecc------------------ccceecccccCCc
Confidence 0 00000000122332220 1111212222235
Q ss_pred EEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEE
Q 000707 541 VDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALR 620 (1341)
Q Consensus 541 I~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~ 620 (1341)
+.+||..+.+.++++.....+ ..+..+|+++.+-+..- .+...++|.++|.++-+ ....+.......+..+.
T Consensus 251 v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~-----~~~~~~~v~viD~~tl~--~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 251 VSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTF-----LNPDADTVQVIDKKTLK--VVKTITPGPGKRVVHME 322 (369)
T ss_dssp TT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-T-----T-SSHT-EEEEECCGTE--EEE-HHHHHT--EEEEE
T ss_pred cccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeecc-----CCCCCceEEEEECcCcc--eeEEEeccCCCcEeccE
Confidence 668999999999999887666 67888999987765521 12225689999998875 44443321223488999
Q ss_pred ECCCCCEEEEEECCC--cEEEEeccCCCceeeecc
Q 000707 621 ASSSGRYLLILFRDA--PVEVWAMTKNPIMLRSLA 653 (1341)
Q Consensus 621 ~SpdG~~Las~s~D~--~I~vWDl~~t~~~l~~l~ 653 (1341)
|++||+++-+..+++ .|.|+|. ++.+.++.++
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D~-~Tl~~~~~i~ 356 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYDA-KTLKEKKRIP 356 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEET-TTTEEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEEC-CCcEEEEEEE
Confidence 999999886655443 6999999 7988877654
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.2e-08 Score=125.20 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=145.4
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEE
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~ 618 (1341)
..|.+||.. |...+.+..|...|...+|+|||+.+.+.... .| +..|.+||+.+|+.+.+.. +...+.+
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~g--~~~i~~~dl~~g~~~~l~~----~~g~~~~ 250 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----NG--RPRVYLLDLETGQRELVGN----FPGMTFA 250 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEec----CC--CCEEEEEECCCCcEEEeec----CCCcccC
Confidence 378899985 45556777888899999999999766554321 11 3589999999998544432 3346678
Q ss_pred EEECCCCCEEE-EEECCCc--EEEEeccCCCceeeeccCc--eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 619 LRASSSGRYLL-ILFRDAP--VEVWAMTKNPIMLRSLALP--FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 619 i~~SpdG~~La-s~s~D~~--I~vWDl~~t~~~l~~l~~~--v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
.+|||||+.|+ +.+.++. |.+||+ .++...+....+ .+...|+|+
T Consensus 251 ~~~SPDG~~la~~~~~~g~~~Iy~~d~-~~~~~~~Lt~~~~~~~~~~~spD----------------------------- 300 (435)
T PRK05137 251 PRFSPDGRKVVMSLSQGGNTDIYTMDL-RSGTTTRLTDSPAIDTSPSYSPD----------------------------- 300 (435)
T ss_pred cEECCCCCEEEEEEecCCCceEEEEEC-CCCceEEccCCCCccCceeEcCC-----------------------------
Confidence 89999999876 5566665 556687 565543321111 233455544
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEec-CC--cEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg--~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~L 768 (1341)
++.+++.+. +| .|+++++++..++.+. .+.+.+...+| ||+.|
T Consensus 301 -----------------------G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt---------~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 301 -----------------------GSQIVFESDRSGSPQLYVMNADGSNPRRIS---------FGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred -----------------------CCEEEEEECCCCCCeEEEEECCCCCeEEee---------cCCCcccCeEECCCCCEE
Confidence 455666553 33 5778888765543321 01122344555 99999
Q ss_pred EEEeCC---CcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECC------CeEEEEECCCCCcccccc
Q 000707 769 VMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD------NTFSVFDLDSQDPLANSL 839 (1341)
Q Consensus 769 asGs~D---gtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~D------gtI~IWDl~~~~~l~~~l 839 (1341)
+..+.+ ..|.+||+.++..+.+. +...+....|+|+ | +.|+..+.+ ..+.+.|+..+.. ..+
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spD--G----~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l 419 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPN--G----RVIMFFRQTPGSGGAPKLYTVDLTGRNE--REV 419 (435)
T ss_pred EEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCC--C----CEEEEEEccCCCCCcceEEEEECCCCce--EEc
Confidence 877654 36888998766554442 2335788999999 5 666665442 2577778876552 122
Q ss_pred ccCCCCCCcEEEEEEcCC
Q 000707 840 LQPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 840 ~~gh~~~~~V~~l~ws~~ 857 (1341)
. . ...+...+|+|.
T Consensus 420 -~-~--~~~~~~p~Wsp~ 433 (435)
T PRK05137 420 -P-T--PGDASDPAWSPL 433 (435)
T ss_pred -c-C--CCCccCcccCCC
Confidence 1 1 134677888874
No 212
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=1.3e-08 Score=124.76 Aligned_cols=213 Identities=15% Similarity=0.158 Sum_probs=129.5
Q ss_pred ccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECC---CcEEEEeccCCCceeee--ccCceEEEEEc
Q 000707 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD---APVEVWAMTKNPIMLRS--LALPFTVLEWT 662 (1341)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D---~~I~vWDl~~t~~~l~~--l~~~v~~l~ws 662 (1341)
...+|++||...+..+.+. . +...+...+|||||++|+.++.+ ..|.+||+ .+++.... +........|+
T Consensus 182 ~~~~l~i~D~~g~~~~~lt---~-~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl-~~g~~~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 182 MRYALQVADSDGYNPQTIL---R-SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDL-ATGQRELVASFRGINGAPSFS 256 (433)
T ss_pred ceEEEEEECCCCCCceEee---c-CCCccccccCCCCCCEEEEEecCCCCcEEEEEEC-CCCCEEEeccCCCCccCceEC
Confidence 3457999998655433332 2 44578899999999999987743 35999999 56654321 22122245566
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE-EecCC--cEEEEEecCCee
Q 000707 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF-ALANG--ALGVFEVHGRRI 739 (1341)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~-~~~Dg--~I~vwdv~~~~v 739 (1341)
|+ +..+++ .+.+| .|++||+.+..+
T Consensus 257 pD----------------------------------------------------G~~l~~~~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 257 PD----------------------------------------------------GRRLALTLSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred CC----------------------------------------------------CCEEEEEEeCCCCceEEEEECCCCCe
Confidence 54 344443 34444 588999976655
Q ss_pred ecccCCCCCCccccccceEEEEee--cCCEEEEEe-CCCc--EEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCE
Q 000707 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGD-RSGN--IRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs-~Dgt--I~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~ 814 (1341)
+.+. .+.+....++| ||+.|+..+ .+|. |.++|+.+++...+..+......++|||+ | ++
T Consensus 285 ~~lt---------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD--G----~~ 349 (433)
T PRK04922 285 TRLT---------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPD--G----KK 349 (433)
T ss_pred EECc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC--C----CE
Confidence 4321 12222345566 899888765 4555 77778877776555444455667899999 5 67
Q ss_pred EEEEECCC---eEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCc--EEEEEccC
Q 000707 815 IAVLFHDN---TFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS--FRLIEVNT 883 (1341)
Q Consensus 815 Las~s~Dg---tI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~Dgt--IrvWdv~~ 883 (1341)
|+....++ .|.+||+.+++.. .+..+ .......|+|+ |+.+ +.+....+. |.++++..
T Consensus 350 Ia~~~~~~~~~~I~v~d~~~g~~~--~Lt~~----~~~~~p~~spd----G~~i-~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 350 IAMVHGSGGQYRIAVMDLSTGSVR--TLTPG----SLDESPSFAPN----GSMV-LYATREGGRGVLAAVSTDG 412 (433)
T ss_pred EEEEECCCCceeEEEEECCCCCeE--ECCCC----CCCCCceECCC----CCEE-EEEEecCCceEEEEEECCC
Confidence 77664432 6999999887632 23222 23456799998 5532 333333333 55555543
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=9.9e-09 Score=125.47 Aligned_cols=212 Identities=13% Similarity=0.143 Sum_probs=133.7
Q ss_pred ccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEEC---CCcEEEEeccCCCce--eeeccCceEEEEEc
Q 000707 588 YINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR---DAPVEVWAMTKNPIM--LRSLALPFTVLEWT 662 (1341)
Q Consensus 588 ~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~---D~~I~vWDl~~t~~~--l~~l~~~v~~l~ws 662 (1341)
+..+|+++|...+..+.+. . +...+...+|||||+.||..+. +..|.+||+ .+++. +..+........|+
T Consensus 177 ~~~~l~~~d~dg~~~~~lt---~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl-~~G~~~~l~~~~~~~~~~~~S 251 (429)
T PRK03629 177 FPYELRVSDYDGYNQFVVH---R-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL-ANGAVRQVASFPRHNGAPAFS 251 (429)
T ss_pred cceeEEEEcCCCCCCEEee---c-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEEC-CCCCeEEccCCCCCcCCeEEC
Confidence 3458999998765533432 2 4457899999999999986643 346899998 56643 22233333456777
Q ss_pred CCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEE-ecCC--cEEEEEecCCee
Q 000707 663 LPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFA-LANG--ALGVFEVHGRRI 739 (1341)
Q Consensus 663 p~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~-~~Dg--~I~vwdv~~~~v 739 (1341)
|+ +..+++. ..+| .|++||+++..+
T Consensus 252 PD----------------------------------------------------G~~La~~~~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 252 PD----------------------------------------------------GSKLAFALSKTGSLNLYVMDLASGQI 279 (429)
T ss_pred CC----------------------------------------------------CCEEEEEEcCCCCcEEEEEECCCCCE
Confidence 65 3445544 3344 488899876555
Q ss_pred ecccCCCCCCccccccceEEEEee--cCCEEEEEeCC-Cc--EEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCE
Q 000707 740 RDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRS-GN--IRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 740 ~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~D-gt--I~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~ 814 (1341)
+.+. .+...+...+| ||+.|+..+.+ |. |.++|+.+++...+..+...+....|||+ | ++
T Consensus 280 ~~lt---------~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD--G----~~ 344 (429)
T PRK03629 280 RQVT---------DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD--G----KF 344 (429)
T ss_pred EEcc---------CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCC--C----CE
Confidence 3321 11123456666 89988776654 44 44557777776666555566778999999 5 67
Q ss_pred EEEEECC---CeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCc---EEEEEccC
Q 000707 815 IAVLFHD---NTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS---FRLIEVNT 883 (1341)
Q Consensus 815 Las~s~D---gtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~Dgt---IrvWdv~~ 883 (1341)
|+..+.+ ..|.+||+.+++.. .+... .......|+|+ |+ .|+.++.|+. +.+|++..
T Consensus 345 Ia~~~~~~g~~~I~~~dl~~g~~~--~Lt~~----~~~~~p~~SpD----G~--~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 345 MVMVSSNGGQQHIAKQDLATGGVQ--VLTDT----FLDETPSIAPN----GT--MVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEEEEccCCCceEEEEECCCCCeE--EeCCC----CCCCCceECCC----CC--EEEEEEcCCCceEEEEEECCC
Confidence 7766543 35888999887622 23111 12346789998 55 5667777765 56666653
No 214
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.12 E-value=1.2e-09 Score=126.03 Aligned_cols=173 Identities=17% Similarity=0.349 Sum_probs=122.0
Q ss_pred CCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec---cCceEEEEEcCCCCCCCCCCCCCcccccccCCCCC
Q 000707 611 PERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL---ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKA 687 (1341)
Q Consensus 611 ~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l---~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~ 687 (1341)
.|.+.|.+-+|+|||.-|++++.||.|++|. ++|-+-.++ ..++.+++|.|++
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS--rsGMLRStl~Q~~~~v~c~~W~p~S---------------------- 157 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS--RSGMLRSTVVQNEESIRCARWAPNS---------------------- 157 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEe--ccchHHHHHhhcCceeEEEEECCCC----------------------
Confidence 3778899999999999999999999999998 466332222 2468899998762
Q ss_pred ccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec--CCeeecccCCCCCCccccccceEEEEee--
Q 000707 688 DTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY-- 763 (1341)
Q Consensus 688 i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~-- 763 (1341)
+.++++ ..+.+.+=.+. .+.+ +| ..|+|.|.++.|
T Consensus 158 ------------------------------~~vl~c-~g~h~~IKpL~~n~k~i-----~W-----kAHDGiiL~~~W~~ 196 (737)
T KOG1524|consen 158 ------------------------------NSIVFC-QGGHISIKPLAANSKII-----RW-----RAHDGLVLSLSWST 196 (737)
T ss_pred ------------------------------CceEEe-cCCeEEEeeccccccee-----EE-----eccCcEEEEeecCc
Confidence 122222 22333332222 1112 12 258999999999
Q ss_pred cCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCC
Q 000707 764 RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQ 843 (1341)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh 843 (1341)
..+.+++|+.|-..++||-....+.+-..|.-+|++|+|.|+ ..+|+++.. +.| +.. +.
T Consensus 197 ~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-------~~~~v~S~n-t~R---~~~----------p~ 255 (737)
T KOG1524|consen 197 QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-------KDYLLWSYN-TAR---FSS----------PR 255 (737)
T ss_pred cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-------cceeeeeee-eee---ecC----------CC
Confidence 678999999999999999866556666789999999999999 456666443 333 111 11
Q ss_pred CCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEE
Q 000707 844 FPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFR 877 (1341)
Q Consensus 844 ~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIr 877 (1341)
.+.|..++|++| |. .++.|...|.+-
T Consensus 256 --~GSifnlsWS~D----GT--Q~a~gt~~G~v~ 281 (737)
T KOG1524|consen 256 --VGSIFNLSWSAD----GT--QATCGTSTGQLI 281 (737)
T ss_pred --ccceEEEEEcCC----Cc--eeeccccCceEE
Confidence 257999999998 55 567777777653
No 215
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.11 E-value=1.5e-08 Score=113.63 Aligned_cols=162 Identities=16% Similarity=0.252 Sum_probs=125.3
Q ss_pred ccccccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEE-EEEEccCCCccc
Q 000707 13 DCNFMLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVT-AVKWIPITLRCD 91 (1341)
Q Consensus 13 ~~~~~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt-~v~~sp~~~~~~ 91 (1341)
=|+..+|-+ +-+|-.+.+-|++.=-+ +|+|+|.+++++++++..-++ ... .+++||..
T Consensus 81 ICe~~fpt~-----IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~-----------n~~gl~AlS~n~---- 139 (391)
T KOG2110|consen 81 ICEIFFPTS-----ILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPP-----------NPKGLCALSPNN---- 139 (391)
T ss_pred EEEEecCCc-----eEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCC-----------CccceEeeccCC----
Confidence 366677764 66899988877765444 499999999999999875432 222 34555542
Q ss_pred cCCCCCCCCCcEEEEE--eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCe-EEEEECCC
Q 000707 92 LLSTEPGSSHLLLAAA--DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSV-LSLYNTTS 168 (1341)
Q Consensus 92 ~~s~~~~p~g~~LASg--~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~-i~lWd~~t 168 (1341)
.+.+||== -..|.|.|||+.+-+.+..+ ..|.+ +|.+|+|+++| .+||+++..|+ |+++.+.+
T Consensus 140 --------~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I--~aH~~-~lAalafs~~G---~llATASeKGTVIRVf~v~~ 205 (391)
T KOG2110|consen 140 --------ANCYLAYPGSTTSGDVVLFDTINLQPVNTI--NAHKG-PLAALAFSPDG---TLLATASEKGTVIRVFSVPE 205 (391)
T ss_pred --------CCceEEecCCCCCceEEEEEcccceeeeEE--EecCC-ceeEEEECCCC---CEEEEeccCceEEEEEEcCC
Confidence 33455432 23689999999998888885 57888 99999999988 89999999986 56999999
Q ss_pred CeEEEEEeCCC--CceEEEEEcCCCCCEEEEEeCCCeEEEEEec
Q 000707 169 ASCMWKYDASP--EYLSCIRRNPFDARHFCVLGLKGLLLSVRVL 210 (1341)
Q Consensus 169 g~~i~~~~~~~--~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~ 210 (1341)
|+++..+..+. -.|.+++|+| |+..|++.|..++|.++.+.
T Consensus 206 G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 206 GQKLYEFRRGTYPVSIYSLSFSP-DSQFLAASSNTETVHIFKLE 248 (391)
T ss_pred ccEeeeeeCCceeeEEEEEEECC-CCCeEEEecCCCeEEEEEec
Confidence 99998876543 3677999999 99999999999999998764
No 216
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.10 E-value=6.5e-09 Score=114.38 Aligned_cols=252 Identities=20% Similarity=0.268 Sum_probs=175.4
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEeecCCCeEEEEEcCCC-cEEEE
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA---VTASFSVHNGTVRGLRWLGNS-RLVSF 576 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~---~~~~l~~H~~~V~~l~fs~d~-~llS~ 576 (1341)
..+|||.+|.+ ++..+|++.++..|.||...... ..++|+-|...|++|+|.+.+ +++++
T Consensus 10 ~~pitchAwn~----------------drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 10 LEPITCHAWNS----------------DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred cCceeeeeecC----------------CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc
Confidence 57899999987 68899999999999999987665 578899999999999999976 99988
Q ss_pred ecCCcccccCcccCeEEEEEc-cCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCcee---eec
Q 000707 577 SYSQVNEKSGGYINRLVVTCL-RSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIML---RSL 652 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~-~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l---~~l 652 (1341)
+.|. ...||.. ..|+-++.-++.. +....++|.|+|.++.+|+|+..+.|-||-.+ ..+-- +.+
T Consensus 74 s~dr----------nayVw~~~~~~~WkptlvLlR-iNrAAt~V~WsP~enkFAVgSgar~isVcy~E-~ENdWWVsKhi 141 (361)
T KOG1523|consen 74 SHDR----------NAYVWTQPSGGTWKPTLVLLR-INRAATCVKWSPKENKFAVGSGARLISVCYYE-QENDWWVSKHI 141 (361)
T ss_pred cCCC----------CccccccCCCCeeccceeEEE-eccceeeEeecCcCceEEeccCccEEEEEEEe-cccceehhhhh
Confidence 8764 5678887 4454443333322 44578999999999999999999999999884 32211 112
Q ss_pred cC----ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCc
Q 000707 653 AL----PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGA 728 (1341)
Q Consensus 653 ~~----~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~ 728 (1341)
++ .|+++.|+|. .-++|.++.|+.
T Consensus 142 kkPirStv~sldWhpn----------------------------------------------------nVLlaaGs~D~k 169 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPN----------------------------------------------------NVLLAAGSTDGK 169 (361)
T ss_pred CCccccceeeeeccCC----------------------------------------------------cceecccccCcc
Confidence 22 3577888764 234678888999
Q ss_pred EEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECC--CCc-eeeeccCCCcEEEEEEccC
Q 000707 729 LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVT--TGH-SSQFSTHREGIRRIKFSPV 805 (1341)
Q Consensus 729 I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~--tg~-~~~l~gH~~~V~~V~fSP~ 805 (1341)
.|+|...=+.+.. ++ .. .-|+-+ -|+ +..+..-.++|..+.|+|.
T Consensus 170 ~rVfSayIK~Vde-kp---ap----------------------------~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 170 CRVFSAYIKGVDE-KP---AP----------------------------TPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred eeEEEEeeecccc-CC---CC----------------------------CCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 9988863222210 11 00 011111 122 2334455789999999998
Q ss_pred CCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEE
Q 000707 806 VPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIE 880 (1341)
Q Consensus 806 ~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWd 880 (1341)
| .+||=.+.|.++.+=|...+.+...++.+.+ .+.+++.|-.+ . .++.++.|..=.++.
T Consensus 218 --G----~~lawv~Hds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise-----~--~vv~ag~~c~P~lf~ 276 (361)
T KOG1523|consen 218 --G----NRLAWVGHDSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE-----N--SVVAAGYDCGPVLFV 276 (361)
T ss_pred --C----CEeeEecCCCceEEeecCCCchhccchhhcc---CCceeeEeecC-----C--ceeecCCCCCceEEE
Confidence 5 7899999999999999988764444443333 56789999875 3 345667764433443
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.10 E-value=3e-07 Score=109.72 Aligned_cols=191 Identities=16% Similarity=0.173 Sum_probs=125.1
Q ss_pred EcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC
Q 000707 41 ASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL 120 (1341)
Q Consensus 41 gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t 120 (1341)
..+++|.|+|..+.+.+.+++.... .-..++|+|| |+++.+++.||.|.++|+.+
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~~~~-----------~h~~~~~s~D--------------gr~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPTGGA-----------PHAGLKFSPD--------------GRYLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE-STT-----------EEEEEE-TT---------------SSEEEEEETTSEEEEEETTS
T ss_pred cCCCEEEEEECCCCeEEEEEcCCCC-----------ceeEEEecCC--------------CCEEEEEcCCCeEEEEECCc
Confidence 3568999999999999999986553 3344678876 57888889999999999999
Q ss_pred CeEEEEecCCCCCCCCeeEEEEeecCCCccEEE-EEeCCCeEEEEECCCCeEEEEEeCC-------CCceEEEEEcCCCC
Q 000707 121 RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLA-AINGPSVLSLYNTTSASCMWKYDAS-------PEYLSCIRRNPFDA 192 (1341)
Q Consensus 121 g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLa-s~s~d~~i~lWd~~tg~~i~~~~~~-------~~~v~~~~fsP~d~ 192 (1341)
++.+.++.. | . ...++++++|+ ++++ +...++.+.++|+.|.+++..+... ...+..+..+|+..
T Consensus 68 ~~~v~~i~~-G--~-~~~~i~~s~DG---~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 68 GKVVATIKV-G--G-NPRGIAVSPDG---KYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp SSEEEEEE--S--S-EEEEEEE--TT---TEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred ccEEEEEec-C--C-CcceEEEcCCC---CEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC
Confidence 999988743 2 2 56789999987 5555 5567899999999999988766432 12466777788555
Q ss_pred CEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000707 193 RHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1341)
Q Consensus 193 ~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~ 272 (1341)
..++..-..+.|.+.|..... ....+.+.+ ........|+|++|+++.+.
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~--~~~~~~i~~----------------------------g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPK--NLKVTTIKV----------------------------GRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSS--CEEEEEEE------------------------------TTEEEEEE-TTSSEEEEEE
T ss_pred EEEEEEccCCeEEEEEecccc--ccceeeecc----------------------------cccccccccCcccceeeecc
Confidence 555555556888887764421 111111110 00233568999999887765
Q ss_pred -cCCeEEEEEcCCCceeEEEec
Q 000707 273 -FPRELVVFDLQYETPLFSAAL 293 (1341)
Q Consensus 273 -~d~~I~iwDl~t~~~l~~~~l 293 (1341)
..+.|-++|.++++.+..+..
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-
T ss_pred cccceeEEEeeccceEEEEeec
Confidence 578999999999988765543
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.09 E-value=6.4e-09 Score=120.70 Aligned_cols=183 Identities=18% Similarity=0.195 Sum_probs=120.4
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCC-CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEe
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD 176 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~ 176 (1341)
.|.|.-|..|=..|.|.+-|....+..+.|.-.. -.+..|+++.|.|.++ .+++++..++.+.++|.. +.
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~--~~Fl~a~~sGnlyly~~~-------~~ 252 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSD--SLFLVAHASGNLYLYDKE-------IV 252 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCC--ceEEEEEecCceEEeecc-------cc
Confidence 3677788899999999888876533222221111 1123899999999763 566667889999999872 11
Q ss_pred CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000707 177 ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1341)
Q Consensus 177 ~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1341)
..... .+...-+ ++..++..-..+.. .+....+|.|. ...+
T Consensus 253 ~~~t~-p~~~~~k-~~~~f~i~t~ksk~----------~rNPv~~w~~~---------------------------~g~i 293 (636)
T KOG2394|consen 253 CGATA-PSYQALK-DGDQFAILTSKSKK----------TRNPVARWHIG---------------------------EGSI 293 (636)
T ss_pred ccCCC-CcccccC-CCCeeEEeeeeccc----------cCCccceeEec---------------------------cccc
Confidence 10111 1111122 44444443221110 01112333321 1136
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 257 ~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
..++|||||++||+++.|+.++|||-.+.+++..+. .-.+.++-|.++|||++|++|++|.-|.+|...++.
T Consensus 294 n~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR 365 (636)
T KOG2394|consen 294 NEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR 365 (636)
T ss_pred cceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEEEeccce
Confidence 788999999999999999999999999988876553 224678889999999999999999999999987654
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.1e-08 Score=125.15 Aligned_cols=236 Identities=18% Similarity=0.194 Sum_probs=141.9
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEE
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~ 618 (1341)
..|.+||. .|...+.+..+...|.+.+|+|||+.+.+.... ..+..|.+||+.+|+.+.+... ...+.+
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~------~~~~~I~~~dl~~g~~~~l~~~----~g~~~~ 244 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE------SKKPVVYVHDLATGRRRVVANF----KGSNSA 244 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEcc------CCCcEEEEEECCCCCEEEeecC----CCCccc
Confidence 35777776 455556666788899999999999766554432 1124799999999985444322 234568
Q ss_pred EEECCCCCEEE-EEECCCcEEEEecc-CCCceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 619 LRASSSGRYLL-ILFRDAPVEVWAMT-KNPIMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 619 i~~SpdG~~La-s~s~D~~I~vWDl~-~t~~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
.+|||||+.|+ +.+.++..+||.+. .++. ++.+.. ..+...|+|+
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpD----------------------------- 294 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPD----------------------------- 294 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCC-----------------------------
Confidence 89999999887 46778888888652 2332 232221 1233556654
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEec-CCcEEEEEe--cCCeeecccCCCCCCccccccceEEEEeecCCEEEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVM 770 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg~I~vwdv--~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~Las 770 (1341)
++.+++.+. +|...+|.+ ++...+... +. +....-.+++.||++|+.
T Consensus 295 -----------------------G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~-----g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 295 -----------------------GRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FT-----GSYNTSPRISPDGKLLAY 344 (427)
T ss_pred -----------------------CCEEEEEecCCCCcEEEEEECCCCceEEEe--cC-----CCCcCceEECCCCCEEEE
Confidence 455665543 456666655 443332110 11 111111234459999998
Q ss_pred EeCCC---cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCC-e--EEEEECCCCCccccccccCCC
Q 000707 771 GDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN-T--FSVFDLDSQDPLANSLLQPQF 844 (1341)
Q Consensus 771 Gs~Dg---tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dg-t--I~IWDl~~~~~l~~~l~~gh~ 844 (1341)
.+.++ .|.+||+.+++.+.+..+ .......|+|+ | +.|+..+.++ . +.+-|+.... ...+ ..+
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~lt~~-~~~~~p~~spd--g----~~l~~~~~~~g~~~l~~~~~~g~~--~~~l-~~~- 413 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTALTDT-TRDESPSFAPN--G----RYILYATQQGGRSVLAAVSSDGRI--KQRL-SVQ- 413 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEEccCC-CCccCceECCC--C----CEEEEEEecCCCEEEEEEECCCCc--eEEe-ecC-
Confidence 77665 699999999886665432 34578899999 5 6677665443 2 4444554322 1122 222
Q ss_pred CCCcEEEEEEcCC
Q 000707 845 PGTLVLELDWLPT 857 (1341)
Q Consensus 845 ~~~~V~~l~ws~~ 857 (1341)
.+.+...+|+|.
T Consensus 414 -~g~~~~p~wsp~ 425 (427)
T PRK02889 414 -GGDVREPSWGPF 425 (427)
T ss_pred -CCCCCCCccCCC
Confidence 245777889874
No 220
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.3e-08 Score=124.89 Aligned_cols=233 Identities=17% Similarity=0.187 Sum_probs=143.5
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEE
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~ 618 (1341)
.+|.+||.. +...+.+..|...|.+..|+||++.+.+.... ..+..|.+||+.+|+.+.+... .....+
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~------~~~~~l~~~dl~~g~~~~l~~~----~g~~~~ 252 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFE------RGRSAIYVQDLATGQRELVASF----RGINGA 252 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecC------CCCcEEEEEECCCCCEEEeccC----CCCccC
Confidence 369999985 44455666777889999999999765544321 1135799999999875444322 233457
Q ss_pred EEECCCCCEEE-EEECCC--cEEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 619 LRASSSGRYLL-ILFRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 619 i~~SpdG~~La-s~s~D~--~I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
.+|||||+.|+ +.+.++ .|.+||+ .++...+.... ..+...|+|+
T Consensus 253 ~~~SpDG~~l~~~~s~~g~~~Iy~~d~-~~g~~~~lt~~~~~~~~~~~spD----------------------------- 302 (433)
T PRK04922 253 PSFSPDGRRLALTLSRDGNPEIYVMDL-GSRQLTRLTNHFGIDTEPTWAPD----------------------------- 302 (433)
T ss_pred ceECCCCCEEEEEEeCCCCceEEEEEC-CCCCeEECccCCCCccceEECCC-----------------------------
Confidence 89999999876 445555 4888998 56654332111 1234566654
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEe-cCCc--EEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGA--LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg~--I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~L 768 (1341)
+..+++.+ .+|. |+++++++...+.+. +. +. ....++| ||+.|
T Consensus 303 -----------------------G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt--~~-----g~--~~~~~~~SpDG~~I 350 (433)
T PRK04922 303 -----------------------GKSIYFTSDRGGRPQIYRVAASGGSAERLT--FQ-----GN--YNARASVSPDGKKI 350 (433)
T ss_pred -----------------------CCEEEEEECCCCCceEEEEECCCCCeEEee--cC-----CC--CccCEEECCCCCEE
Confidence 34555554 3444 666666554433211 00 11 1223445 99999
Q ss_pred EEEeCCC---cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECC---CeEEEEECCCCCccccccccC
Q 000707 769 VMGDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD---NTFSVFDLDSQDPLANSLLQP 842 (1341)
Q Consensus 769 asGs~Dg---tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~D---gtI~IWDl~~~~~l~~~l~~g 842 (1341)
+..+.++ .|.+||+.+++.+.+. +........|+|+ | ++|+..+.+ +.+.++|++.... ..+ ..
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~~Lt-~~~~~~~p~~spd--G----~~i~~~s~~~g~~~L~~~~~~g~~~--~~l-~~ 420 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVRTLT-PGSLDESPSFAPN--G----SMVLYATREGGRGVLAAVSTDGRVR--QRL-VS 420 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeEECC-CCCCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCce--EEc-cc
Confidence 8776543 6999999988866553 3345667899999 5 566665542 4577888865431 222 21
Q ss_pred CCCCCcEEEEEEcC
Q 000707 843 QFPGTLVLELDWLP 856 (1341)
Q Consensus 843 h~~~~~V~~l~ws~ 856 (1341)
+ .+.+...+|+|
T Consensus 421 ~--~g~~~~p~wsp 432 (433)
T PRK04922 421 A--DGEVREPAWSP 432 (433)
T ss_pred C--CCCCCCCccCC
Confidence 2 24567788886
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=2.5e-08 Score=105.81 Aligned_cols=241 Identities=12% Similarity=0.070 Sum_probs=158.9
Q ss_pred CCCceEeCCCC-eEEEEc-CCeEEEEeCCC---------cc-eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccC
Q 000707 26 NFGSADLSPSG-LLAFAS-GSSISILDSRS---------LQ-LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs-~~~V~v~d~~~---------~~-~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1341)
++-+-+|||.+ .++.|+ .+.|.|....+ +| .+-+..+|.+ +|..++|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-----------piy~~~f~d-------- 72 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-----------PIYYLAFHD-------- 72 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-----------Ceeeeeeeh--------
Confidence 34566899988 566664 57888877643 23 3445678998 899999983
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCCeE------EEEecCCCCC----CCCeeEEEEeecCCCccEEEEEeCCCeEEE
Q 000707 94 STEPGSSHLLLAAADRHGRVALLDFRLRSV------VLWIDPDPNP----KLGIQDLCWIVSKPDSFVLAAINGPSVLSL 163 (1341)
Q Consensus 94 s~~~~p~g~~LASg~~dG~I~vWDv~tg~~------~~~l~~~~h~----~~~V~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1341)
.+|.||+. |.|+=|..+.-.. +-++..+-|. -+.|++|-..|..+ .+|. +++|+.+..
T Consensus 73 --------~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~-AgGD~~~y~ 140 (325)
T KOG0649|consen 73 --------DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILF-AGGDGVIYQ 140 (325)
T ss_pred --------hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEE-ecCCeEEEE
Confidence 35888874 9999888754221 0111112222 11578887777652 3444 448999999
Q ss_pred EECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccC
Q 000707 164 YNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAA 243 (1341)
Q Consensus 164 Wd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~ 243 (1341)
||+++|+...++.+|++.+.|+.-.- ....+.+++.||++++||...+..... +..+ + .-..++-+|
T Consensus 141 ~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~-ie~y----k--~~~~lRp~~----- 207 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSM-IEPY----K--NPNLLRPDW----- 207 (325)
T ss_pred EEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEE-eccc----c--ChhhcCccc-----
Confidence 99999999999999999999998854 556888999999999999866332111 0000 0 001111111
Q ss_pred CCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEE
Q 000707 244 SLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSI 323 (1341)
Q Consensus 244 ~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~l 323 (1341)
..++-.++-+.| +++.+ ....+.+|.|...+...+++++ +++..+.| +.+.+..+++...|.-
T Consensus 208 ---------g~wigala~~ed--WlvCG-gGp~lslwhLrsse~t~vfpip---a~v~~v~F--~~d~vl~~G~g~~v~~ 270 (325)
T KOG0649|consen 208 ---------GKWIGALAVNED--WLVCG-GGPKLSLWHLRSSESTCVFPIP---ARVHLVDF--VDDCVLIGGEGNHVQS 270 (325)
T ss_pred ---------CceeEEEeccCc--eEEec-CCCceeEEeccCCCceEEEecc---cceeEeee--ecceEEEeccccceee
Confidence 124554455544 45544 4556889999999999999887 34445554 4667888888888887
Q ss_pred Eecc
Q 000707 324 WRRK 327 (1341)
Q Consensus 324 W~~~ 327 (1341)
|...
T Consensus 271 ~~l~ 274 (325)
T KOG0649|consen 271 YTLN 274 (325)
T ss_pred eeec
Confidence 7654
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=9.4e-10 Score=126.30 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=105.4
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK 134 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~ 134 (1341)
.+...|..|.+ .|+.|-|... |..|+||+.|.+|.+||...+.....| ..||..
T Consensus 133 ~l~~kL~~H~G-----------cVntV~FN~~--------------Gd~l~SgSDD~~vv~WdW~~~~~~l~f-~SGH~~ 186 (559)
T KOG1334|consen 133 RLQKKLNKHKG-----------CVNTVHFNQR--------------GDVLASGSDDLQVVVWDWVSGSPKLSF-ESGHCN 186 (559)
T ss_pred hhhhcccCCCC-----------ccceeeeccc--------------CceeeccCccceEEeehhhccCccccc-cccccc
Confidence 34567899999 9999998854 689999999999999999999888887 468888
Q ss_pred CCeeEEEEeecCCCccEEEEEeCCCeEEEEECC-CCeEE--EEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 135 LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCM--WKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 135 ~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i--~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
-|..-.|.|...+ +.|++++.|+.+++=... +|.+. ..+.-|.++|.-++..|+++..|-++|.|+.++-+|++.
T Consensus 187 -NvfQaKFiP~s~d-~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~ 264 (559)
T KOG1334|consen 187 -NVFQAKFIPFSGD-RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ 264 (559)
T ss_pred -chhhhhccCCCCC-cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeecc
Confidence 7877789998755 788999999999987654 45443 223446788999999999999999999999998877643
No 223
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.06 E-value=8.1e-09 Score=119.86 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred ceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee-eeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCC
Q 000707 756 GLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ 832 (1341)
Q Consensus 756 ~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~-~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~ 832 (1341)
+.|+.++| ||++||+.+.||.+||||..+.++. .+..--+...+|+|||| | ++|++++.|--|.||.+..+
T Consensus 291 g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD--G----KyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD--G----KYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred ccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC--c----cEEEecCCcceEEEEEeccc
Confidence 45777888 9999999999999999999987743 34555688999999999 6 89999999999999999887
Q ss_pred CccccccccCCCCCCcEEEEEEcCCCCC-------------------------------CC-----------CCeEEEEE
Q 000707 833 DPLANSLLQPQFPGTLVLELDWLPTRTD-------------------------------KN-----------DPLVLCIA 870 (1341)
Q Consensus 833 ~~l~~~l~~gh~~~~~V~~l~ws~~~~~-------------------------------~g-----------~~~~Las~ 870 (1341)
+-++ .-+|| ..||..|+|.|.... .+ -.+.+.|.
T Consensus 365 RVVA--RGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSV 440 (636)
T KOG2394|consen 365 RVVA--RGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSV 440 (636)
T ss_pred eEEE--ecccc--ccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecc
Confidence 6332 22455 489999999842111 12 23578899
Q ss_pred ECCCcEEEEEccCC
Q 000707 871 GADSSFRLIEVNTE 884 (1341)
Q Consensus 871 s~DgtIrvWdv~~~ 884 (1341)
|.|-.+-+||+...
T Consensus 441 GqDTqlcLWDlteD 454 (636)
T KOG2394|consen 441 GQDTQLCLWDLTED 454 (636)
T ss_pred cccceEEEEecchh
Confidence 99999999999864
No 224
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.05 E-value=2.1e-08 Score=110.22 Aligned_cols=101 Identities=14% Similarity=0.285 Sum_probs=71.2
Q ss_pred EEEEee--cCCEEEEEe--CCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 758 ITAMAY--RLPHVVMGD--RSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 758 v~sla~--dg~~LasGs--~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
+.-++| |..++++-. .-+.+.+||++..+++.+-.-+.+|+...|.|.. -+|+++.....+.+|-.....
T Consensus 321 ~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~------prL~vctg~srLY~W~psg~~ 394 (447)
T KOG4497|consen 321 AGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR------PRLVVCTGKSRLYFWAPSGPR 394 (447)
T ss_pred cceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCC------ceEEEEcCCceEEEEcCCCce
Confidence 456777 777777643 2357889999887776665567899999999984 468887666679999877655
Q ss_pred ccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCc
Q 000707 834 PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS 875 (1341)
Q Consensus 834 ~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~Dgt 875 (1341)
.+.... . |-.|.++.|+-+ |+ .++..+.|.-
T Consensus 395 ~V~vP~-~----GF~i~~l~W~~~----g~--~i~l~~kDaf 425 (447)
T KOG4497|consen 395 VVGVPK-K----GFNIQKLQWLQP----GE--FIVLCGKDAF 425 (447)
T ss_pred EEecCC-C----CceeeeEEecCC----Cc--EEEEEcCCce
Confidence 332222 2 356999999987 56 3556666653
No 225
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=2.3e-08 Score=122.66 Aligned_cols=204 Identities=14% Similarity=0.074 Sum_probs=133.2
Q ss_pred eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeC---CCcEEEEeCCCC
Q 000707 45 SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR---HGRVALLDFRLR 121 (1341)
Q Consensus 45 ~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~---dG~I~vWDv~tg 121 (1341)
.|.++|... ...+.+..|.. .|...+|||| |+.||..+. +..|.+||+.+|
T Consensus 183 ~l~~~d~dg-~~~~~lt~~~~-----------~v~~p~wSpD--------------G~~lay~s~~~g~~~i~~~dl~~g 236 (435)
T PRK05137 183 RLAIMDQDG-ANVRYLTDGSS-----------LVLTPRFSPN--------------RQEITYMSYANGRPRVYLLDLETG 236 (435)
T ss_pred EEEEECCCC-CCcEEEecCCC-----------CeEeeEECCC--------------CCEEEEEEecCCCCEEEEEECCCC
Confidence 788999854 44455667776 8999999987 466776653 468999999988
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCC--eEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEe
Q 000707 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPS--VLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1341)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~--~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~ 199 (1341)
+.... ..+.+ .+...+|+||+. .++.+.+.++ .|.+||+.++.. ..++.+.......+|+| |++++++.+
T Consensus 237 ~~~~l---~~~~g-~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s 308 (435)
T PRK05137 237 QRELV---GNFPG-MTFAPRFSPDGR--KVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFES 308 (435)
T ss_pred cEEEe---ecCCC-cccCcEECCCCC--EEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEE
Confidence 76443 22334 677889999872 4555665554 477779987764 34554445566789999 999998876
Q ss_pred C-CC--eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC--
Q 000707 200 L-KG--LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP-- 274 (1341)
Q Consensus 200 ~-dG--~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d-- 274 (1341)
. +| .|+++|..+.. .+.+ .. .........|||||+.+++...+
T Consensus 309 ~~~g~~~Iy~~d~~g~~-----~~~l------------t~---------------~~~~~~~~~~SpdG~~ia~~~~~~~ 356 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN-----PRRI------------SF---------------GGGRYSTPVWSPRGDLIAFTKQGGG 356 (435)
T ss_pred CCCCCCeEEEEECCCCC-----eEEe------------ec---------------CCCcccCeEECCCCCEEEEEEcCCC
Confidence 4 33 56666654321 1111 00 01122345899999999998754
Q ss_pred -CeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecC
Q 000707 275 -RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLD 318 (1341)
Q Consensus 275 -~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~D 318 (1341)
..|.+||+..+.. ..+. .+ .......++|||+.|+..+.+
T Consensus 357 ~~~i~~~d~~~~~~-~~lt--~~-~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 357 QFSIGVMKPDGSGE-RILT--SG-FLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred ceEEEEEECCCCce-Eecc--CC-CCCCCCeECCCCCEEEEEEcc
Confidence 4689999876643 2232 11 123456779999988776553
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.04 E-value=1.9e-08 Score=122.93 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=134.3
Q ss_pred CeEEEEcC----CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCC-
Q 000707 36 GLLAFASG----SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRH- 110 (1341)
Q Consensus 36 gllA~gs~----~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~d- 110 (1341)
+.|||-+. ..|.++|. .+...+.+..|.. .|.+.+|||| |+.||..+.+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~-dG~~~~~l~~~~~-----------~v~~p~wSPD--------------G~~la~~s~~~ 217 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDA-DGQNAQSALSSPE-----------PIISPAWSPD--------------GTKLAYVSFES 217 (427)
T ss_pred cEEEEEEccCCccEEEEECC-CCCCceEeccCCC-----------CcccceEcCC--------------CCEEEEEEccC
Confidence 56776542 35778887 4444445556666 7889999987 4677766532
Q ss_pred --CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE--ECCCCeEEEEEeCCCCceEEEE
Q 000707 111 --GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY--NTTSASCMWKYDASPEYLSCIR 186 (1341)
Q Consensus 111 --G~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW--d~~tg~~i~~~~~~~~~v~~~~ 186 (1341)
..|.+||+.+|+........ + .+....|+||+. .++.+.+.++...|| |+.++. +..+..+.......+
T Consensus 218 ~~~~I~~~dl~~g~~~~l~~~~---g-~~~~~~~SPDG~--~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~ 290 (427)
T PRK02889 218 KKPVVYVHDLATGRRRVVANFK---G-SNSAPAWSPDGR--TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPF 290 (427)
T ss_pred CCcEEEEEECCCCCEEEeecCC---C-CccceEECCCCC--EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeE
Confidence 35999999998765432222 3 456789999872 444566777766666 554444 444544444456788
Q ss_pred EcCCCCCEEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 187 RNPFDARHFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 187 fsP~d~~~la~~~~-dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
|+| |+++++..+. +|...+|.+..... . .+... .. ..+....+|||||
T Consensus 291 wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g--~-~~~lt----------~~-----------------g~~~~~~~~SpDG 339 (427)
T PRK02889 291 FSP-DGRSIYFTSDRGGAPQIYRMPASGG--A-AQRVT----------FT-----------------GSYNTSPRISPDG 339 (427)
T ss_pred EcC-CCCEEEEEecCCCCcEEEEEECCCC--c-eEEEe----------cC-----------------CCCcCceEECCCC
Confidence 999 9999887764 35555554321100 0 01110 00 0012245899999
Q ss_pred CceEEEEcCC---eEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCC
Q 000707 266 RHIIFVTFPR---ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1341)
Q Consensus 266 ~~l~~~~~d~---~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1341)
+.+++.+.++ +|.+||+.+++... +. . + .......++|||+.|+....++
T Consensus 340 ~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt-~-~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 KLLAYISRVGGAFKLYVQDLATGQVTA-LT-D-T-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CEEEEEEccCCcEEEEEEECCCCCeEE-cc-C-C-CCccCceECCCCCEEEEEEecC
Confidence 9999888654 69999999887543 22 1 1 1224567789999888776554
No 227
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.2e-05 Score=96.01 Aligned_cols=118 Identities=14% Similarity=0.103 Sum_probs=80.9
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcCcHHHHH
Q 000707 1118 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEAC 1197 (1341)
Q Consensus 1118 ~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~ 1197 (1341)
++-..++|+.+|.++|+=--+.+ ++-+..+.+-..++..+..--.-++|++||..+|....-+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d-----------------~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ 829 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSD-----------------DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQI 829 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH
Confidence 66677889999999977553322 1134455555667777777777788999999999999888
Q ss_pred HHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccH-HHHHHHHHHhCCHHHHH
Q 000707 1198 SQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNI-WRALILYVAAGGLQEAL 1257 (1341)
Q Consensus 1198 ~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~-~~A~~~~~~~g~~~~a~ 1257 (1341)
++|-...++.+-=.||.+ | +|-.++|..-|+-+.+-+ + .+|+.+|+.-+....|+
T Consensus 830 ecly~le~f~~LE~la~~-L--pe~s~llp~~a~mf~svG--MC~qAV~a~Lr~s~pkaAv 885 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLART-L--PEDSELLPVMADMFTSVG--MCDQAVEAYLRRSLPKAAV 885 (1189)
T ss_pred HHHHHHHhhhhHHHHHHh-c--CcccchHHHHHHHHHhhc--hHHHHHHHHHhccCcHHHH
Confidence 888888888876666665 4 333566666666665544 3 56777776654444443
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.04 E-value=9.2e-10 Score=125.67 Aligned_cols=244 Identities=14% Similarity=0.178 Sum_probs=172.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEE
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRV 607 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~ 607 (1341)
+|..++.|+.-|.|..+|..++.+..++.. ...|+++.|..+..+++++.. +.+.|+|- .|. .+..
T Consensus 140 nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK----------~y~yvYD~-~Gt--ElHC 205 (545)
T KOG1272|consen 140 NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK----------KYVYVYDN-NGT--ELHC 205 (545)
T ss_pred CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh----------ceEEEecC-CCc--EEee
Confidence 689999999999999999999999888875 367999999988888876653 47888884 444 4554
Q ss_pred eccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 608 LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 608 l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
++. ...|..+.|-|..-+|++++..|-++.-|+ .+|+++..+. +.+..++
T Consensus 206 lk~--~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DV-S~GklVa~~~t~~G~~~vm~------------------------ 258 (545)
T KOG1272|consen 206 LKR--HIRVARLEFLPYHFLLVAASEAGFLKYQDV-STGKLVASIRTGAGRTDVMK------------------------ 258 (545)
T ss_pred hhh--cCchhhhcccchhheeeecccCCceEEEee-chhhhhHHHHccCCccchhh------------------------
Confidence 443 357899999998888888899999999999 6887765443 1111111
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee-
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY- 763 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~- 763 (1341)
+.|..-.+-.|-.+|+|.+|....+..- . .+..|.+.|.+|++
T Consensus 259 ----------------------------qNP~NaVih~GhsnGtVSlWSP~skePL---v-----KiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 259 ----------------------------QNPYNAVIHLGHSNGTVSLWSPNSKEPL---V-----KILCHRGPVSSIAVD 302 (545)
T ss_pred ----------------------------cCCccceEEEcCCCceEEecCCCCcchH---H-----HHHhcCCCcceEEEC
Confidence 1222234456778999999998654310 0 12357788999999
Q ss_pred -cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEE-ECCCCCccccccc
Q 000707 764 -RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF-DLDSQDPLANSLL 840 (1341)
Q Consensus 764 -dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IW-Dl~~~~~l~~~l~ 840 (1341)
+|+++|+.+.|..++|||++.-. ++++.. .-+...++||-. +.||.+ ...-|.|| |.-.+.......-
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqk-------glLA~~-~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQK-------GLLALS-YGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred CCCcEEeecccccceeEeeeccccccceeec-CCCccccccccc-------cceeee-cCCeeeeehhhhcCCCCCCcch
Confidence 79999999999999999998643 555544 456777888765 445554 55569999 3332111111111
Q ss_pred cCCCCCCcEEEEEEcCC
Q 000707 841 QPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 841 ~gh~~~~~V~~l~ws~~ 857 (1341)
.-|.-+..|.++.|+|.
T Consensus 374 m~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 374 MNHRCGGPVEDLRFCPY 390 (545)
T ss_pred hhhccCcccccceeccH
Confidence 34555578999999997
No 229
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=6.6e-08 Score=108.50 Aligned_cols=235 Identities=14% Similarity=0.213 Sum_probs=155.6
Q ss_pred CCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCc--E
Q 000707 560 GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAP--V 637 (1341)
Q Consensus 560 ~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~--I 637 (1341)
..+..+.|..+..+++.+... ..+++....-. +...... ....|-..-||. .++|..+.+.+ +
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~----------Gyk~~~~~~~~-k~~~~~~--~~~~IvEmLFSS--SLvaiV~~~qpr~L 70 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKD----------GYKIFSCSPFE-KCFSKDT--EGVSIVEMLFSS--SLVAIVSIKQPRKL 70 (391)
T ss_pred cceeeeeeccceeEEEccCCC----------ceeEEecCchH-HhhcccC--CCeEEEEeeccc--ceeEEEecCCCceE
Confidence 345666688888777755421 34566554311 0222111 223344455664 47777777766 8
Q ss_pred EEEeccCCCceeeec--cCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCC
Q 000707 638 EVWAMTKNPIMLRSL--ALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDD 715 (1341)
Q Consensus 638 ~vWDl~~t~~~l~~l--~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~ 715 (1341)
++.+. |....+..+ +.++-++...
T Consensus 71 kv~~~-Kk~~~ICe~~fpt~IL~VrmN----------------------------------------------------- 96 (391)
T KOG2110|consen 71 KVVHF-KKKTTICEIFFPTSILAVRMN----------------------------------------------------- 96 (391)
T ss_pred EEEEc-ccCceEEEEecCCceEEEEEc-----------------------------------------------------
Confidence 99998 666655433 2333333332
Q ss_pred CCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEE--eCCCcEEEEECCCCc-eeee
Q 000707 716 TSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMG--DRSGNIRWWDVTTGH-SSQF 790 (1341)
Q Consensus 716 ~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasG--s~DgtI~lWDl~tg~-~~~l 790 (1341)
++.+++...+ .|+|||++..++-+....+|. +...+.++++ .+.+||-= -..|.|.+||+.+-+ ...+
T Consensus 97 -r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~-----n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I 169 (391)
T KOG2110|consen 97 -RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPP-----NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTI 169 (391)
T ss_pred -cceEEEEEcc-cEEEEecccceeehhhhccCC-----CccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEE
Confidence 2455555544 499999977655321122222 2223777777 45577752 246899999998866 5678
Q ss_pred ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCe-EEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEE
Q 000707 791 STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNT-FSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCI 869 (1341)
Q Consensus 791 ~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dgt-I~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las 869 (1341)
..|++.|-+++|+|+ | .+||+++.-|| |||+.+.+++.+ ..++.|-. -..|.+++|+|+ +. +|++
T Consensus 170 ~aH~~~lAalafs~~--G----~llATASeKGTVIRVf~v~~G~kl-~eFRRG~~-~~~IySL~Fs~d----s~--~L~~ 235 (391)
T KOG2110|consen 170 NAHKGPLAALAFSPD--G----TLLATASEKGTVIRVFSVPEGQKL-YEFRRGTY-PVSIYSLSFSPD----SQ--FLAA 235 (391)
T ss_pred EecCCceeEEEECCC--C----CEEEEeccCceEEEEEEcCCccEe-eeeeCCce-eeEEEEEEECCC----CC--eEEE
Confidence 999999999999999 6 78999998887 699999999844 45555544 367899999998 33 6899
Q ss_pred EECCCcEEEEEccCC
Q 000707 870 AGADSSFRLIEVNTE 884 (1341)
Q Consensus 870 ~s~DgtIrvWdv~~~ 884 (1341)
.|..+||.++.+...
T Consensus 236 sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKV 250 (391)
T ss_pred ecCCCeEEEEEeccc
Confidence 999999999999863
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.02 E-value=1.4e-08 Score=110.36 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=85.0
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEE--EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEE
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLL--AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAA 154 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~L--ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas 154 (1341)
.|..++|+|++ ..+ ++|..+++|.|||++ ++.+..+. .. +++.+.|+|+| ++|+.
T Consensus 61 ~I~~~~WsP~g--------------~~favi~g~~~~~v~lyd~~-~~~i~~~~----~~-~~n~i~wsP~G---~~l~~ 117 (194)
T PF08662_consen 61 PIHDVAWSPNG--------------NEFAVIYGSMPAKVTLYDVK-GKKIFSFG----TQ-PRNTISWSPDG---RFLVL 117 (194)
T ss_pred ceEEEEECcCC--------------CEEEEEEccCCcccEEEcCc-ccEeEeec----CC-CceEEEECCCC---CEEEE
Confidence 69999999875 444 445677899999996 66666652 24 78999999998 77777
Q ss_pred EeC---CCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeC------CCeEEEEEecC
Q 000707 155 ING---PSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGL------KGLLLSVRVLG 211 (1341)
Q Consensus 155 ~s~---d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~------dG~i~~~d~~~ 211 (1341)
++- .|.|.+||+.+.+++.+.. +..++.++|+| |++.|+++.. |..+.+|++.|
T Consensus 118 ~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 118 AGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred EEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 653 4679999999888886655 34578999999 9999999854 67788888765
No 231
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=7.5e-09 Score=119.92 Aligned_cols=177 Identities=13% Similarity=0.109 Sum_probs=128.0
Q ss_pred eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCC
Q 000707 57 ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG 136 (1341)
Q Consensus 57 ~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~ 136 (1341)
-+.|.||++ .|+++.|+.+ |.+||||++|-+++|||+-..+.++.+ ..||+. -
T Consensus 43 E~eL~GH~G-----------CVN~LeWn~d--------------G~lL~SGSDD~r~ivWd~~~~KllhsI-~TgHta-N 95 (758)
T KOG1310|consen 43 EAELTGHTG-----------CVNCLEWNAD--------------GELLASGSDDTRLIVWDPFEYKLLHSI-STGHTA-N 95 (758)
T ss_pred hhhhccccc-----------eecceeecCC--------------CCEEeecCCcceEEeecchhcceeeee-eccccc-c
Confidence 457899999 9999999976 688999999999999999887887776 579998 8
Q ss_pred eeEEEEeecCCCccEEEEEeCCCeEEEEECCCC----------eEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 000707 137 IQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA----------SCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLS 206 (1341)
Q Consensus 137 V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg----------~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~ 206 (1341)
|.++.|.|..++ ++++++.+|..|+++|+..- +.+.-+..|.+.|.-++.-|..+..|-+++.||+++-
T Consensus 96 IFsvKFvP~tnn-riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 96 IFSVKFVPYTNN-RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred eeEEeeeccCCC-eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceee
Confidence 999999998755 89999999999999999731 1222234455677778888877799999999999999
Q ss_pred EEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEE-EEcCCeEEEEEc
Q 000707 207 VRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIF-VTFPRELVVFDL 282 (1341)
Q Consensus 207 ~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~-~~~d~~I~iwDl 282 (1341)
+|+..... . ..+.+....+... -| ......+++.||...+.+. ++.|--.++||.
T Consensus 175 yDiREph~--c-------~p~~~~~~~l~ny--------~~----~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 175 YDIREPHV--C-------NPDEDCPSILVNY--------NP----QLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ecccCCcc--C-------CccccccHHHHHh--------ch----hhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 98754211 0 0011111111110 00 0122345688998765554 457788999993
No 232
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.1e-07 Score=103.98 Aligned_cols=228 Identities=16% Similarity=0.144 Sum_probs=141.6
Q ss_pred ccccccCCCCCCCCCCceEeCCCC--eEEEEcCCeEEEEeCCC-c---ce--------eE--eecCCCCCCCCCCCCCCC
Q 000707 13 DCNFMLPGPPSRNNFGSADLSPSG--LLAFASGSSISILDSRS-L---QL--------IS--TIPIPPPTSAGSVASLSP 76 (1341)
Q Consensus 13 ~~~~~lpg~~~~~~~~a~~~s~~g--llA~gs~~~V~v~d~~~-~---~~--------~~--~l~~H~~~~~~~~~~~~~ 76 (1341)
+|.-.|..... .|+.|++|-|.+ -||.||...|.||.... + .. .+ .-+||.
T Consensus 130 t~pt~Lks~sQ-rnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~------------ 196 (445)
T KOG2139|consen 130 TCPTKLKSVSQ-RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN------------ 196 (445)
T ss_pred CCCceecchhh-cceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCc------------
Confidence 55446665544 479999999976 79999999999997532 1 11 11 223443
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEE
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~-dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1341)
.||+++|.+| |..|++++. |..|+|||+.+|..+... .-..+ ++.-|.||||+ ++|.++
T Consensus 197 pVtsmqwn~d--------------gt~l~tAS~gsssi~iWdpdtg~~~pL~--~~glg-g~slLkwSPdg---d~lfaA 256 (445)
T KOG2139|consen 197 PVTSMQWNED--------------GTILVTASFGSSSIMIWDPDTGQKIPLI--PKGLG-GFSLLKWSPDG---DVLFAA 256 (445)
T ss_pred eeeEEEEcCC--------------CCEEeecccCcceEEEEcCCCCCccccc--ccCCC-ceeeEEEcCCC---CEEEEe
Confidence 7999999976 577888875 578999999998766542 11224 78899999998 677778
Q ss_pred eCCCeEEEEEC-CCCeEEEEEeCCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccce---eeeeEEEecCcch
Q 000707 156 NGPSVLSLYNT-TSASCMWKYDASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEV---VVKELQIQTDCTE 230 (1341)
Q Consensus 156 s~d~~i~lWd~-~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~---~~k~~~i~~~~~~ 230 (1341)
.-|+..++|+- ++-++.. ....++.|....|+| +++.|... +..-.++...+.++.+... ..|...+ ..+
T Consensus 257 t~davfrlw~e~q~wt~er-w~lgsgrvqtacWsp-cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~ll---iaD 331 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKER-WILGSGRVQTACWSP-CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLL---IAD 331 (445)
T ss_pred cccceeeeehhcccceecc-eeccCCceeeeeecC-CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeee---ecc
Confidence 88999999954 3333321 122356899999999 77766554 4445666555544222110 0122221 112
Q ss_pred hhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCC--------eEEEEEcCCCce
Q 000707 231 LLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPR--------ELVVFDLQYETP 287 (1341)
Q Consensus 231 l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~--------~I~iwDl~t~~~ 287 (1341)
|+.+... ++ +.---+..-++++-|.|..+++..-.+ .|.+||....-.
T Consensus 332 L~e~ti~--------ag-~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 332 LQEVTIC--------AG-QRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred chhhhhh--------cC-cccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 2222110 00 000011234569999999998876433 377888775543
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=3e-08 Score=123.43 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=143.0
Q ss_pred CeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCce-----EEEEEcCCCCCCCCCCCCCcccccccCCCCCcc
Q 000707 615 PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPF-----TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADT 689 (1341)
Q Consensus 615 ~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v-----~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~ 689 (1341)
.|....+..+...++.+..+..+-+||. +...++.....+- .++-|-.
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~-~~~~~~~~i~~~er~~l~~~~~~g~-------------------------- 141 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDS-KNSSVLSKIQSDERCTLYSSLIIGD-------------------------- 141 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEec-ccCceehhcCCCceEEEEeEEEEec--------------------------
Confidence 4455556666778888889999999999 6776666554321 1111110
Q ss_pred CCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCE
Q 000707 690 TDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPH 767 (1341)
Q Consensus 690 ~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~ 767 (1341)
.+..=++++++.-|.|.+|........ . .+.||.|.|.++.| ||++
T Consensus 142 ------------------------s~~~~~i~~gsv~~~iivW~~~~dn~p----~----~l~GHeG~iF~i~~s~dg~~ 189 (967)
T KOG0974|consen 142 ------------------------SAEELYIASGSVFGEIIVWKPHEDNKP----I----RLKGHEGSIFSIVTSLDGRY 189 (967)
T ss_pred ------------------------cCcEEEEEeccccccEEEEeccccCCc----c----eecccCCceEEEEEccCCcE
Confidence 011124678888899999998632211 1 24589999999999 9999
Q ss_pred EEEEeCCCcEEEEECCCCc-ee-eeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCC
Q 000707 768 VVMGDRSGNIRWWDVTTGH-SS-QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFP 845 (1341)
Q Consensus 768 LasGs~DgtI~lWDl~tg~-~~-~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~ 845 (1341)
+++.|.|.+||+|++.+++ .. +.-||+++|..+.|+|. +|++++.|-|.++|+....+ +. .. .+|.
T Consensus 190 i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~~~~-l~-~y-~~h~- 257 (967)
T KOG0974|consen 190 IASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVNGTQ-LE-VY-DEHS- 257 (967)
T ss_pred EEEEecCcceeeeecccccccCcccccccceeEEEEeccc--------eeEEeccceEEEEEecccce-eh-hh-hhhh-
Confidence 9999999999999999987 33 56789999999999997 69999999999999776543 32 33 5676
Q ss_pred CCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 846 GTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 846 ~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
+..++.++..+. .. .+++++.||++|+|+...
T Consensus 258 g~~iw~~~~~~~-----~~-~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 258 GKGIWKIAVPIG-----VI-IKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hcceeEEEEcCC-----ce-EEEeeccCcchhhhhhhc
Confidence 356888988875 44 678999999999999865
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.90 E-value=7.7e-08 Score=104.59 Aligned_cols=111 Identities=16% Similarity=0.362 Sum_probs=76.1
Q ss_pred CcEEEEeCCC-CcEEEEEee-cCCCeEEEEEcCCCc-EEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCC
Q 000707 539 GAVDVVDVSA-NAVTASFSV-HNGTVRGLRWLGNSR-LVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAP 615 (1341)
Q Consensus 539 GtI~lWDl~t-g~~~~~l~~-H~~~V~~l~fs~d~~-llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~ 615 (1341)
|...||.+.. +.....+.- ..++|.+++|+|++. ++... |...+.+.+||++ ++ .+..+ +..+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~--------g~~~~~v~lyd~~-~~--~i~~~---~~~~ 102 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY--------GSMPAKVTLYDVK-GK--KIFSF---GTQP 102 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE--------ccCCcccEEEcCc-cc--EeEee---cCCC
Confidence 4566666632 233344433 345799999999884 43332 2223489999996 43 45544 2357
Q ss_pred eEEEEECCCCCEEEEEECC---CcEEEEeccCCCceeeeccC-ceEEEEEcCC
Q 000707 616 IRALRASSSGRYLLILFRD---APVEVWAMTKNPIMLRSLAL-PFTVLEWTLP 664 (1341)
Q Consensus 616 I~~i~~SpdG~~Las~s~D---~~I~vWDl~~t~~~l~~l~~-~v~~l~wsp~ 664 (1341)
+..|.|||+|++||+++.+ |.|++||+ ++.+.+.+... ..+.++|+|+
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~-~~~~~i~~~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDV-RKKKKISTFEHSDATDVEWSPD 154 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEEC-CCCEEeeccccCcEEEEEEcCC
Confidence 7899999999999998754 56999999 67777776653 3577999987
No 235
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.87 E-value=9e-08 Score=110.95 Aligned_cols=221 Identities=16% Similarity=0.140 Sum_probs=143.1
Q ss_pred CCceEeCCCCeEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 27 FGSADLSPSGLLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 27 ~~a~~~s~~gllA~gs~-~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
+-+++|+.+--+.|.++ ..+.+|...+....+.+..+.. +|...-+ +.+. .+ .--.....++
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-----------f~pt~~h-~~~r----s~-~~g~~~d~~~ 79 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-----------FVPTDMH-LGGR----SS-GGGKGSDTLL 79 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCCcc-----------cCCcccc-cccc----cc-CCCCCcceEE
Confidence 45899987775555554 4566676555544555555554 4433222 2111 00 0112234677
Q ss_pred EEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEE
Q 000707 106 AADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCI 185 (1341)
Q Consensus 106 Sg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~ 185 (1341)
.++.||++.|-+ +.|++.+. ...|.+ .|.+-.|+|+| .-|++.++||.|++|.- +|-...++....++|.|+
T Consensus 80 i~s~DGkf~il~-k~~rVE~s--v~AH~~-A~~~gRW~~dG---tgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 80 ICSNDGRFVILN-KSARVERS--ISAHAA-AISSGRWSPDG---AGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEcCCceEEEec-ccchhhhh--hhhhhh-hhhhcccCCCC---ceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 888899999888 45666655 467877 89888999998 67889999999999986 565443444446789999
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 186 RRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 186 ~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
+|.| ++..++.+.. +.+.+=-+... .. .-+ |- .|.+-++++.++|..
T Consensus 152 ~W~p-~S~~vl~c~g-~h~~IKpL~~n---~k-~i~----------------Wk-----------AHDGiiL~~~W~~~s 198 (737)
T KOG1524|consen 152 RWAP-NSNSIVFCQG-GHISIKPLAAN---SK-IIR----------------WR-----------AHDGLVLSLSWSTQS 198 (737)
T ss_pred EECC-CCCceEEecC-CeEEEeecccc---cc-eeE----------------Ee-----------ccCcEEEEeecCccc
Confidence 9999 6666655533 23333111110 00 001 11 133468899999999
Q ss_pred CceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCC
Q 000707 266 RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1341)
Q Consensus 266 ~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1341)
.-+++++.|-..+|||.. |+.+-.-. -+..++.+|++.||
T Consensus 199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~--~~ey~ITSva~npd 238 (737)
T KOG1524|consen 199 NIIASGGEDFRFKIWDAQ-GANLFTSA--AEEYAITSVAFNPE 238 (737)
T ss_pred cceeecCCceeEEeeccc-CcccccCC--hhccceeeeeeccc
Confidence 999999999999999976 55553322 23468999999999
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.85 E-value=4.3e-06 Score=98.02 Aligned_cols=238 Identities=13% Similarity=0.080 Sum_probs=145.6
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE-e---------CCCcE
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA-D---------RHGRV 113 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg-~---------~dG~I 113 (1341)
+.|.|.|..+++.+.+++.=.. +.. + +|||+ +.|..+ . ++..|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~----------P~~--~-~spDg--------------~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL----------PNP--V-VASDG--------------SFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC----------Cce--e-ECCCC--------------CEEEEEeccccccccCCCCCEE
Confidence 8899999999999888764332 122 3 77764 445444 3 57899
Q ss_pred EEEeCCCCeEEEEecCCCC----CCCCeeEEEEeecCCCccEEEEEe--CCCeEEEEECCCCeEEEEEeCCCCceEEEE-
Q 000707 114 ALLDFRLRSVVLWIDPDPN----PKLGIQDLCWIVSKPDSFVLAAIN--GPSVLSLYNTTSASCMWKYDASPEYLSCIR- 186 (1341)
Q Consensus 114 ~vWDv~tg~~~~~l~~~~h----~~~~V~~l~wsp~~~~~~lLas~s--~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~- 186 (1341)
.|||+.+++.+.++++.+. .......++++||+ ++|.... .++.|.+.|+.+++.+..+.-. +...-+.
T Consensus 80 ~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg---k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t 155 (352)
T TIGR02658 80 EVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN---KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPT 155 (352)
T ss_pred EEEECccCcEEeEEccCCCchhhccCccceEEECCCC---CEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEe
Confidence 9999999999998865322 01123467899987 6665543 4799999999998876654431 1100000
Q ss_pred -------EcC--------------------------------------CCCCEEEEEeCCCeEEEEEecCCcccceeeee
Q 000707 187 -------RNP--------------------------------------FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKE 221 (1341)
Q Consensus 187 -------fsP--------------------------------------~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~ 221 (1341)
..+ .|++.+.+... |.|.+.|+++..... .+
T Consensus 156 ~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~--~~- 231 (352)
T TIGR02658 156 ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF--LP- 231 (352)
T ss_pred cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee--cc-
Confidence 011 12222222211 333333332211000 00
Q ss_pred EEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc----------CCeEEEEEcCCCceeEEE
Q 000707 222 LQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF----------PRELVVFDLQYETPLFSA 291 (1341)
Q Consensus 222 ~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~----------d~~I~iwDl~t~~~l~~~ 291 (1341)
.|...+. ..++..-.|...-.++|+||++++...+. .++|.++|+++++.+..+
T Consensus 232 ---------------~~~~~~~-~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i 295 (352)
T TIGR02658 232 ---------------AIEAFTE-AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI 295 (352)
T ss_pred ---------------eeeeccc-cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE
Confidence 0100000 00000112223333799999998887542 268999999999999988
Q ss_pred ecCCCccceEEEEEcCCCC-EEEEEe-cCCcEEEEeccCCceeeee
Q 000707 292 ALPRGCAKFLDVLADPNND-LLYCAH-LDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~-~L~s~~-~DgtI~lW~~~~g~~~~~~ 335 (1341)
... .....+.++||++ .||... .+++|.+.|..+++.+..+
T Consensus 296 ~vG---~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 296 ELG---HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred eCC---CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 764 3567889999999 999777 6889999999988766654
No 237
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1.2e-07 Score=106.98 Aligned_cols=135 Identities=16% Similarity=0.109 Sum_probs=102.8
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEeecCCCeEEEEEcCCCcEEEEecC
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-VTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-~~~~l~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
+-+++.+.|-|+ .....+|+++.-+.||+||...++ .+.+|..-..+|.++...|++.+|-+
T Consensus 202 PvW~tdi~Fl~g--------------~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--- 264 (412)
T KOG3881|consen 202 PVWITDIRFLEG--------------SPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--- 264 (412)
T ss_pred eeeeccceecCC--------------CCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE---
Confidence 345677888763 124689999999999999998774 67788777889999999999877643
Q ss_pred CcccccCcccCeEEEEEccCCceeeeEE-eccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeec--cCce
Q 000707 580 QVNEKSGGYINRLVVTCLRSGINRAFRV-LQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSL--ALPF 656 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~-l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l--~~~v 656 (1341)
|.+.+.+..+|+++++ .+.. +++ -.+.|++|..+|.+++||+++-|+-|||+|+ ++..++... +...
T Consensus 265 ------gn~~g~l~~FD~r~~k--l~g~~~kg-~tGsirsih~hp~~~~las~GLDRyvRIhD~-ktrkll~kvYvKs~l 334 (412)
T KOG3881|consen 265 ------GNTKGQLAKFDLRGGK--LLGCGLKG-ITGSIRSIHCHPTHPVLASCGLDRYVRIHDI-KTRKLLHKVYVKSRL 334 (412)
T ss_pred ------ecccchhheecccCce--eeccccCC-ccCCcceEEEcCCCceEEeeccceeEEEeec-ccchhhhhhhhhccc
Confidence 3345678999999987 3333 344 6778999999999999999999999999999 786666432 2234
Q ss_pred EEEEEc
Q 000707 657 TVLEWT 662 (1341)
Q Consensus 657 ~~l~ws 662 (1341)
+.+-+.
T Consensus 335 t~il~~ 340 (412)
T KOG3881|consen 335 TFILLR 340 (412)
T ss_pred cEEEec
Confidence 555554
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.83 E-value=4.1e-07 Score=110.91 Aligned_cols=207 Identities=14% Similarity=0.098 Sum_probs=130.3
Q ss_pred eEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCC---CcEEEEeCCCC
Q 000707 45 SISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRH---GRVALLDFRLR 121 (1341)
Q Consensus 45 ~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~d---G~I~vWDv~tg 121 (1341)
.|.++|...... +.|..|.. .+...+|||| |++||.+..+ ..|.+||+.+|
T Consensus 171 ~l~~~d~~g~~~-~~l~~~~~-----------~~~~p~~Spd--------------g~~la~~~~~~~~~~i~v~d~~~g 224 (417)
T TIGR02800 171 ELQVADYDGANP-QTITRSRE-----------PILSPAWSPD--------------GQKLAYVSFESGKPEIYVQDLATG 224 (417)
T ss_pred eEEEEcCCCCCC-EEeecCCC-----------ceecccCCCC--------------CCEEEEEEcCCCCcEEEEEECCCC
Confidence 588888754443 44555655 6888889876 5677766543 47999999998
Q ss_pred eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCC--CeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEe
Q 000707 122 SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP--SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1341)
Q Consensus 122 ~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d--~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~ 199 (1341)
+...... +.+ .+..++|+|++. .++.+.+.+ ..|.+||+.++... .+..+.......+|+| |+++|++.+
T Consensus 225 ~~~~~~~---~~~-~~~~~~~spDg~--~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~-dg~~l~~~s 296 (417)
T TIGR02800 225 QREKVAS---FPG-MNGAPAFSPDGS--KLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSP-DGKSIAFTS 296 (417)
T ss_pred CEEEeec---CCC-CccceEECCCCC--EEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECC-CCCEEEEEE
Confidence 6554322 223 566789999872 454555444 46888999877542 3333333444678999 999888776
Q ss_pred CC-C--eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCC-
Q 000707 200 LK-G--LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPR- 275 (1341)
Q Consensus 200 ~d-G--~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~- 275 (1341)
.. | .|+.+|+.+.. .+.+ .. ........+|+|||+.+++...+.
T Consensus 297 ~~~g~~~iy~~d~~~~~-----~~~l------------~~---------------~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 297 DRGGSPQIYMMDADGGE-----VRRL------------TF---------------RGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred CCCCCceEEEEECCCCC-----EEEe------------ec---------------CCCCccCeEECCCCCEEEEEEccCC
Confidence 53 3 56666643311 0111 00 001233558999999999998775
Q ss_pred --eEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcE
Q 000707 276 --ELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKL 321 (1341)
Q Consensus 276 --~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI 321 (1341)
.|.+||+.++... .+... .......++|||+.|+....++..
T Consensus 345 ~~~i~~~d~~~~~~~-~l~~~---~~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 345 GFNIAVMDLDGGGER-VLTDT---GLDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred ceEEEEEeCCCCCeE-EccCC---CCCCCceECCCCCEEEEEEeCCCc
Confidence 8999999987543 22211 112234678999988877766543
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.82 E-value=6.6e-07 Score=109.13 Aligned_cols=213 Identities=16% Similarity=0.193 Sum_probs=130.3
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEE
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRA 618 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~ 618 (1341)
..|.++|... ...+.+..+...+....|+||++.+.+.... .....|.+||+.+|+.+.+.. +...+.+
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~------~~~~~i~v~d~~~g~~~~~~~----~~~~~~~ 238 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFE------SGKPEIYVQDLATGQREKVAS----FPGMNGA 238 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcC------CCCcEEEEEECCCCCEEEeec----CCCCccc
Confidence 3588888753 3345566677788999999999877665421 112589999999987443332 3345667
Q ss_pred EEECCCCCEEEE-EECCC--cEEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCc
Q 000707 619 LRASSSGRYLLI-LFRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGV 693 (1341)
Q Consensus 619 i~~SpdG~~Las-~s~D~--~I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~ 693 (1341)
++|+|||+.|+. .+.++ .|.+||+ .++...+.... ......|+|
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~-~~~~~~~l~~~~~~~~~~~~s~------------------------------ 287 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDL-DGKQLTRLTNGPGIDTEPSWSP------------------------------ 287 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEEC-CCCCEEECCCCCCCCCCEEECC------------------------------
Confidence 899999998764 44444 5888888 55543222111 112234443
Q ss_pred ccccccCCCCCcCCCCCCccCCCCCeEEEEec-CC--cEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEE
Q 000707 694 STPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHV 768 (1341)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg--~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~L 768 (1341)
+++.+++.+. ++ .|+++++++...+.+. .+...+..++| ||++|
T Consensus 288 ----------------------dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---------~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 288 ----------------------DGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---------FRGGYNASPSWSPDGDLI 336 (417)
T ss_pred ----------------------CCCEEEEEECCCCCceEEEEECCCCCEEEee---------cCCCCccCeEECCCCCEE
Confidence 2455555543 33 5777777655433211 01122444555 89999
Q ss_pred EEEeCCC---cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCC---eEEEEECCC
Q 000707 769 VMGDRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN---TFSVFDLDS 831 (1341)
Q Consensus 769 asGs~Dg---tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dg---tI~IWDl~~ 831 (1341)
+.++.++ .|.+||+.++....+..+ .......|+|+ | ++|+..+.++ .+.+.+...
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spd--g----~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPN--G----RMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCC--C----CEEEEEEeCCCcEEEEEEECCC
Confidence 9988876 899999988765554432 23456789999 4 6777665543 355555544
No 240
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.80 E-value=7.7e-09 Score=118.27 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=168.3
Q ss_pred eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEE
Q 000707 37 LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL 116 (1341)
Q Consensus 37 llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vW 116 (1341)
++|.+..+-|.|+|- .|.-++.|..|. .|..+.|-|- .-+||+++..|-.+--
T Consensus 184 ~~AVAQK~y~yvYD~-~GtElHClk~~~------------~v~rLeFLPy--------------HfLL~~~~~~G~L~Y~ 236 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDN-NGTELHCLKRHI------------RVARLEFLPY--------------HFLLVAASEAGFLKYQ 236 (545)
T ss_pred HHHhhhhceEEEecC-CCcEEeehhhcC------------chhhhcccch--------------hheeeecccCCceEEE
Confidence 677777788899984 567778888887 5999999864 5679999999999999
Q ss_pred eCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEE
Q 000707 117 DFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFC 196 (1341)
Q Consensus 117 Dv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la 196 (1341)
|+.+|+.+..+.. ..+ .+..|+-.|.. -++-.|+..|+|.+|.....+++-++-.|.++|.+++++| +++.++
T Consensus 237 DVS~GklVa~~~t--~~G-~~~vm~qNP~N---aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMa 309 (545)
T KOG1272|consen 237 DVSTGKLVASIRT--GAG-RTDVMKQNPYN---AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMA 309 (545)
T ss_pred eechhhhhHHHHc--cCC-ccchhhcCCcc---ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEe
Confidence 9999999887633 234 67777777766 7899999999999999998888877777799999999999 999999
Q ss_pred EEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCe
Q 000707 197 VLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRE 276 (1341)
Q Consensus 197 ~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~ 276 (1341)
+.|.|..+.+||+..... ++.++ + | ++ ...++||- +.+++++....
T Consensus 310 TtG~Dr~~kIWDlR~~~q----------------l~t~~---t-------p----~~--a~~ls~Sq--kglLA~~~G~~ 355 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFYQ----------------LHTYR---T-------P----HP--ASNLSLSQ--KGLLALSYGDH 355 (545)
T ss_pred ecccccceeEeeeccccc----------------cceee---c-------C----CC--cccccccc--ccceeeecCCe
Confidence 999999999999755210 11110 0 0 11 12336664 67888888889
Q ss_pred EEEEEcCCC---ceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 277 LVVFDLQYE---TPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 277 I~iwDl~t~---~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
|.||--..+ ..-.-..-|+-.+++.++.|||-.++|-.||.-|--.|--.-.|+
T Consensus 356 v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe 412 (545)
T KOG1272|consen 356 VQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE 412 (545)
T ss_pred eeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence 999964422 111111123344578889999999999999988865555444444
No 241
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.79 E-value=0.00076 Score=78.28 Aligned_cols=106 Identities=17% Similarity=0.254 Sum_probs=80.3
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCc
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQV 581 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~ 581 (1341)
+.|.+++++| +|+.++++.....|.+.|+++|.+...=....+-|+.+.|++++++++.++.
T Consensus 402 g~I~av~vs~----------------dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP-- 463 (668)
T COG4946 402 GNIEAVKVSP----------------DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFP-- 463 (668)
T ss_pred cceEEEEEcC----------------CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecC--
Confidence 4578888888 6899999999999999999999875544445578999999999999998885
Q ss_pred ccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEE
Q 000707 582 NEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILF 632 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s 632 (1341)
.|-+...|+|+|+.+|+.-.+.+-.+ +. .+=+|.|||+||---+
T Consensus 464 ---~gy~tq~Iklydm~~~Kiy~vTT~ta-~D---fsPaFD~d~ryLYfLs 507 (668)
T COG4946 464 ---EGYYTQSIKLYDMDGGKIYDVTTPTA-YD---FSPAFDPDGRYLYFLS 507 (668)
T ss_pred ---cceeeeeEEEEecCCCeEEEecCCcc-cc---cCcccCCCCcEEEEEe
Confidence 46667789999999988332222111 21 3447889999886443
No 242
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.2e-07 Score=104.98 Aligned_cols=226 Identities=15% Similarity=0.227 Sum_probs=143.5
Q ss_pred CCCcEEEEeCCCCcEEEE------EeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCc--eeeeEEe
Q 000707 537 QSGAVDVVDVSANAVTAS------FSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI--NRAFRVL 608 (1341)
Q Consensus 537 ~DGtI~lWDl~tg~~~~~------l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~--~~~l~~l 608 (1341)
.|-.+...+.+...+..+ ..+-+++|.++.... +.++++-. +|.+++|....+. ..++..+
T Consensus 77 ~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d-g~Litc~~----------sG~l~~~~~k~~d~hss~l~~l 145 (412)
T KOG3881|consen 77 ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD-GTLITCVS----------SGNLQVRHDKSGDLHSSKLIKL 145 (412)
T ss_pred cCcccccccccCCccccccccccccccccccccchhhcC-CEEEEEec----------CCcEEEEeccCCccccccceee
Confidence 555566665554444333 234456777776544 44444322 3589999987543 2233333
Q ss_pred ccCCCCCeEEEEECCCCC-EEEEEECC--CcEEEEeccCCCceeeeccCce-------EEEEEcCCCCCCCCCCCCCccc
Q 000707 609 QKPERAPIRALRASSSGR-YLLILFRD--APVEVWAMTKNPIMLRSLALPF-------TVLEWTLPTVPWPSQTGPSRQS 678 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~-~Las~s~D--~~I~vWDl~~t~~~l~~l~~~v-------~~l~wsp~~~~~~~~~~~~k~~ 678 (1341)
.. + .++..+.-++.-. ++|+|+.. ..++|||+ .+.+.+-+-+ ++ ..=.|.-+
T Consensus 146 a~-g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdl-e~~~qiw~aK-NvpnD~L~LrVPvW~td-------------- 207 (412)
T KOG3881|consen 146 AT-G-PGLYDVRQTDTDPYIVATGGKENINELKIWDL-EQSKQIWSAK-NVPNDRLGLRVPVWITD-------------- 207 (412)
T ss_pred ec-C-CceeeeccCCCCCceEecCchhcccceeeeec-ccceeeeecc-CCCCccccceeeeeecc--------------
Confidence 32 2 4566677666544 45668888 88999999 4554332211 11 00112111
Q ss_pred ccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec-CCeeecccCCCCCCccccccce
Q 000707 679 SLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH-GRRIRDFRPKWPSSSFISSDGL 757 (1341)
Q Consensus 679 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~-~~~v~~~~~~~~~~~l~~~~~~ 757 (1341)
. .|....+...||++..-+.+++||.. +++.. ..++ | ....
T Consensus 208 --------------------i----------~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV---~~fd---~--~E~~ 249 (412)
T KOG3881|consen 208 --------------------I----------RFLEGSPNYKFATITRYHQVRLYDTRHQRRPV---AQFD---F--LENP 249 (412)
T ss_pred --------------------c----------eecCCCCCceEEEEecceeEEEecCcccCcce---eEec---c--ccCc
Confidence 0 01111124679999999999999995 33321 1111 1 1234
Q ss_pred EEEEee--cCCEEEEEeCCCcEEEEECCCCce--eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 758 ITAMAY--RLPHVVMGDRSGNIRWWDVTTGHS--SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 758 v~sla~--dg~~LasGs~DgtI~lWDl~tg~~--~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
+++++. +|++|++|..-|.+..+|+++++. ..+.|-.|.|++|..+|. + ..||+++-|+.+||+|+.+.+
T Consensus 250 is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~--~----~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 250 ISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT--H----PVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred ceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCC--C----ceEEeeccceeEEEeecccch
Confidence 555554 999999999999999999999984 458899999999999998 3 679999999999999999966
Q ss_pred cc
Q 000707 834 PL 835 (1341)
Q Consensus 834 ~l 835 (1341)
.+
T Consensus 324 ll 325 (412)
T KOG3881|consen 324 LL 325 (412)
T ss_pred hh
Confidence 44
No 243
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=1.2e-06 Score=107.51 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=137.8
Q ss_pred cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEE
Q 000707 540 AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRAL 619 (1341)
Q Consensus 540 tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i 619 (1341)
.|.++|...+. .+.+..|...+....|+|||+.+.+.... . ....|.+||+.+|+.+.+.. ....+...
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~----~--~~~~l~~~~l~~g~~~~l~~----~~g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFE----Q--KRPRIFVQNLDTGRREQITN----FEGLNGAP 248 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcC----C--CCCEEEEEECCCCCEEEccC----CCCCcCCe
Confidence 47788876443 45566677889999999999766554321 1 13479999999987544432 22344568
Q ss_pred EECCCCCEEEE-EECCC--cEEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcc
Q 000707 620 RASSSGRYLLI-LFRDA--PVEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVS 694 (1341)
Q Consensus 620 ~~SpdG~~Las-~s~D~--~I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~ 694 (1341)
+|||||++|+. ...++ .|.+||+ .++...+.... ..+...|+|+
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~-~~~~~~~lt~~~~~~~~~~~spD------------------------------ 297 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDL-ASRQLSRVTNHPAIDTEPFWGKD------------------------------ 297 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEEC-CCCCeEEcccCCCCcCCeEECCC------------------------------
Confidence 99999998874 44555 4777788 56654322111 1233456544
Q ss_pred cccccCCCCCcCCCCCCccCCCCCeEEEEec-CC--cEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEE
Q 000707 695 TPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771 (1341)
Q Consensus 695 ~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg--~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasG 771 (1341)
++.+++.+. +| .|+++++.+..++.+. +. +.......++.||+.|+..
T Consensus 298 ----------------------g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~-----~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 298 ----------------------GRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FV-----GNYNARPRLSADGKTLVMV 348 (430)
T ss_pred ----------------------CCEEEEEECCCCCceEEEEECCCCCEEEee--cC-----CCCccceEECCCCCEEEEE
Confidence 344554442 33 4667777554443211 00 1111122344489998877
Q ss_pred eCCC---cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECC---CeEEEEECCCCCccccccccCCCC
Q 000707 772 DRSG---NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHD---NTFSVFDLDSQDPLANSLLQPQFP 845 (1341)
Q Consensus 772 s~Dg---tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~D---gtI~IWDl~~~~~l~~~l~~gh~~ 845 (1341)
+.++ .|.+||+.+++.+.+. +........|||+ | +.|+..+.+ ..+.++++..... ..+ ..+
T Consensus 349 ~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spd--g----~~i~~~~~~~g~~~l~~~~~~g~~~--~~l-~~~-- 416 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPN--G----TMLIYATRQQGRGVLMLVSINGRVR--LPL-PTA-- 416 (430)
T ss_pred EccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCce--EEC-cCC--
Confidence 6543 5889999998765553 2233346689999 5 566655433 3467777765432 122 211
Q ss_pred CCcEEEEEEcCC
Q 000707 846 GTLVLELDWLPT 857 (1341)
Q Consensus 846 ~~~V~~l~ws~~ 857 (1341)
.+.+...+|+|.
T Consensus 417 ~g~~~~p~ws~~ 428 (430)
T PRK00178 417 QGEVREPSWSPY 428 (430)
T ss_pred CCCcCCCccCCC
Confidence 245677888874
No 244
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.76 E-value=2.3e-06 Score=94.78 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=147.1
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
...+.|+-|. -+|.|.+.-.+|++....+......-+.+ | -.+..+-|- ..+||
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~---G------~~~veMLfR----------------~N~la 62 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDG---G------FKIVEMLFR----------------SNYLA 62 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccC---c------hhhhhHhhh----------------hceEE
Confidence 3458998775 78888888889998776443222222221 0 012111111 23333
Q ss_pred -EEeCC------CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC-CCeEEEEEeC
Q 000707 106 -AADRH------GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDA 177 (1341)
Q Consensus 106 -Sg~~d------G~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~ 177 (1341)
.|+.+ .+|.|||=...+++.++++. . +|.++++.++ +++++. ++.|.+|.-. .-+.++.++-
T Consensus 63 LVGGg~~pky~pNkviIWDD~k~~~i~el~f~---~-~I~~V~l~r~----riVvvl--~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 63 LVGGGSRPKYPPNKVIIWDDLKERCIIELSFN---S-EIKAVKLRRD----RIVVVL--ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred EecCCCCCCCCCceEEEEecccCcEEEEEEec---c-ceeeEEEcCC----eEEEEe--cCeEEEEEcCCChhheeeeec
Confidence 33322 58999996667788887652 4 8999999875 344444 6889999876 3344444332
Q ss_pred CCCceEEEEEcCCCCC-EEEEEeC-CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000707 178 SPEYLSCIRRNPFDAR-HFCVLGL-KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1341)
Q Consensus 178 ~~~~v~~~~fsP~d~~-~la~~~~-dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1341)
...+=--++..|.... .||.-|. -|.|.+.|+....... ... -.+|...
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~----p~~-------------------------I~AH~s~ 183 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA----PSI-------------------------INAHDSD 183 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC----ceE-------------------------EEcccCc
Confidence 1111112333442222 2222232 3666666553311100 000 0124445
Q ss_pred eEEEEEccCCCceEEEEcCCe-EEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 256 MVKFTFSPHWRHIIFVTFPRE-LVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 256 v~~~afSpdg~~l~~~~~d~~-I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
|.+++.+.+|..+|+++..|+ |+|||.++|+.+..+.-.-..+.+..++|+||+.+|+++|.-|||-|...+.
T Consensus 184 Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 184 IACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred eeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 777899999999999999988 8899999999998775222235678899999999999999999999998764
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=1.7e-06 Score=101.58 Aligned_cols=280 Identities=14% Similarity=0.225 Sum_probs=164.5
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEeecC-CCeEEEEEcCCC--cEEE
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVP-LVALGTQSGAVDVVDVSANAVTASFSVHN-GTVRGLRWLGNS--RLVS 575 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~-llAsGs~DGtI~lWDl~tg~~~~~l~~H~-~~V~~l~fs~d~--~llS 575 (1341)
++..-|.|.++| +|+ ++|+|..--.|++||+.. +.-.|.-|. ..|..+....|. +.+-
T Consensus 50 ~p~ast~ik~s~----------------DGqY~lAtG~YKP~ikvydlan--LSLKFERhlDae~V~feiLsDD~SK~v~ 111 (703)
T KOG2321|consen 50 MPTASTRIKVSP----------------DGQYLLATGTYKPQIKVYDLAN--LSLKFERHLDAEVVDFEILSDDYSKSVF 111 (703)
T ss_pred CccccceeEecC----------------CCcEEEEecccCCceEEEEccc--ceeeeeecccccceeEEEeccchhhheE
Confidence 566778899998 455 578999999999999965 444566675 344444433322 2221
Q ss_pred EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccC-
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLAL- 654 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~- 654 (1341)
.-. |.+|.+- ..-|..-.+|. + ..-+.+.++.-..-|..++....|.-.++ ..|..+..+..
T Consensus 112 L~~----------DR~IefH-ak~G~hy~~RI-P----~~GRDm~y~~~scDly~~gsg~evYRlNL-EqGrfL~P~~~~ 174 (703)
T KOG2321|consen 112 LQN----------DRTIEFH-AKYGRHYRTRI-P----KFGRDMKYHKPSCDLYLVGSGSEVYRLNL-EQGRFLNPFETD 174 (703)
T ss_pred eec----------Cceeeeh-hhcCeeeeeec-C----cCCccccccCCCccEEEeecCcceEEEEc-cccccccccccc
Confidence 111 1122211 11232111111 1 12245555533333444444555666778 57776665441
Q ss_pred --ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEE
Q 000707 655 --PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVF 732 (1341)
Q Consensus 655 --~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vw 732 (1341)
.++++..+ +...++++|..||.|..|
T Consensus 175 ~~~lN~v~in----------------------------------------------------~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 175 SGELNVVSIN----------------------------------------------------EEHGLLACGTEDGVVEFW 202 (703)
T ss_pred cccceeeeec----------------------------------------------------CccceEEecccCceEEEe
Confidence 12222211 223578888899999999
Q ss_pred EecCCe-ee--cccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeee--ccCCCcEEEEEEccC
Q 000707 733 EVHGRR-IR--DFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQF--STHREGIRRIKFSPV 805 (1341)
Q Consensus 733 dv~~~~-v~--~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l--~gH~~~V~~V~fSP~ 805 (1341)
|...+. +. ++....+..........|+++.| ||=.++.|.++|.|.++|+++.+..-. .+..-+|..+.|-+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 985432 21 11111111111122345999999 477899999999999999999873333 455678999999876
Q ss_pred CCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 806 VPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 806 ~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
..+ ..|+++ +-..++|||-.++++.+. . .+ ...+.++++-|+ .+ ++.+|-.++.+-.|=+.
T Consensus 283 ~~q----~~v~S~-Dk~~~kiWd~~~Gk~~as-i-Ep---t~~lND~C~~p~-----sG-m~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 283 DQQ----NKVVSM-DKRILKIWDECTGKPMAS-I-EP---TSDLNDFCFVPG-----SG-MFFTANESSKMHTYYIP 343 (703)
T ss_pred CCC----ceEEec-chHHhhhcccccCCceee-c-cc---cCCcCceeeecC-----Cc-eEEEecCCCcceeEEcc
Confidence 222 345555 667899999999885432 1 11 245889999886 44 35677777766655544
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=4.3e-07 Score=100.86 Aligned_cols=269 Identities=13% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCC-cc----eeEeecCCCCCCCCCCCCC-----CCcEEEEEEccCCCccc
Q 000707 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRS-LQ----LISTIPIPPPTSAGSVASL-----SPFVTAVKWIPITLRCD 91 (1341)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~-~~----~~~~l~~H~~~~~~~~~~~-----~~~Vt~v~~sp~~~~~~ 91 (1341)
.+++.++.|...| +||+|. |+.|+++.-.. .+ ...++..|.+ --+|+ ...|+.++|.+++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshep----EFDYLkSleieEKinkIrw~~~~n~-- 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEP----EFDYLKSLEIEEKINKIRWLDDGNL-- 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCc----ccchhhhhhhhhhhhhceecCCCCc--
Confidence 3567899999999 999996 46888875432 22 4556667764 22344 567999999998632
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEE-----------------------------------EEecCCCCCCCC
Q 000707 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSVV-----------------------------------LWIDPDPNPKLG 136 (1341)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~-----------------------------------~~l~~~~h~~~~ 136 (1341)
..+|.| ..|.+|++|.+...... +.+ -..|+- .
T Consensus 99 ---------a~FLls-tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~-aNaHty-h 166 (433)
T KOG1354|consen 99 ---------AEFLLS-TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY-ANAHTY-H 166 (433)
T ss_pred ---------cEEEEe-cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec-ccccee-E
Confidence 334444 57999999998643211 111 123444 6
Q ss_pred eeEEEEeecCCCccEEEEEeCCCeEEEEECCC-CeEEEEEe---CC----CCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 137 IQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS-ASCMWKYD---AS----PEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 137 V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t-g~~i~~~~---~~----~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
|+++.+..|. ..+.|+. |=.|-||++.- .++..-.+ .. ++.|++.-|+|.....|+-.+.+|.|++.|
T Consensus 167 iNSIS~NsD~---Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 167 INSISVNSDK---ETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred eeeeeecCcc---ceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 8888887765 6676665 78899999872 22222121 11 346788899998888999999999999999
Q ss_pred ecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcC-CCce
Q 000707 209 VLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ-YETP 287 (1341)
Q Consensus 209 ~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~-t~~~ 287 (1341)
++...--+...|.+.-.-+.....=.. ..-..|-.+.||++||.+++-.+ -+|.|||+. ..++
T Consensus 243 mR~~aLCd~hsKlfEepedp~~rsffs---------------eiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p 306 (433)
T KOG1354|consen 243 MRQSALCDAHSKLFEEPEDPSSRSFFS---------------EIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP 306 (433)
T ss_pred chhhhhhcchhhhhccccCCcchhhHH---------------HHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence 864211111011111000000000000 00012457899999998776543 789999994 4556
Q ss_pred eEEEecCCC-----------ccce--EEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 288 LFSAALPRG-----------CAKF--LDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 288 l~~~~l~~~-----------~~~~--~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
+.+.+.+.. ..-| ..+.++-++..+++|+-+.-+++.+...|.
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 666665421 1111 123445567799999999999999965554
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1.5e-06 Score=102.13 Aligned_cols=279 Identities=14% Similarity=0.126 Sum_probs=173.4
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCC--CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCc
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQK 213 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~--~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~ 213 (1341)
.-+.|..+|||. .+||+|...-.|++||+..=. .++..| .+.|.-.-.+- |-+.+|....|..|-+-.-.
T Consensus 53 ast~ik~s~DGq--Y~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak~--- 124 (703)
T KOG2321|consen 53 ASTRIKVSPDGQ--YLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAKY--- 124 (703)
T ss_pred ccceeEecCCCc--EEEEecccCCceEEEEcccce--eeeeecccccceeEEEecc-chhhheEeecCceeeehhhc---
Confidence 457788899873 688888889999999986332 234333 33444333332 55666666666665441100
Q ss_pred ccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEec
Q 000707 214 EDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAAL 293 (1341)
Q Consensus 214 ~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l 293 (1341)
+.-+. . -.|-..-.|+|+.-.-.|+.++...+|.-++|+-|+-+..+..
T Consensus 125 -----G~hy~----------------~----------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 125 -----GRHYR----------------T----------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred -----Ceeee----------------e----------ecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 11111 0 0122344567776667789999999999999999999877765
Q ss_pred CCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcc
Q 000707 294 PRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLC 373 (1341)
Q Consensus 294 ~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~ 373 (1341)
..+.... |--++-..+|+||..||.|..||.++...+.++.-... +++.......|+|+++.|..+
T Consensus 174 ~~~~lN~--v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg~~~~~svTal~F~d~----------- 239 (703)
T KOG2321|consen 174 DSGELNV--VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPGGDAAPSVTALKFRDD----------- 239 (703)
T ss_pred cccccee--eeecCccceEEecccCceEEEecchhhhhheeeecccc-cCCCccccccCcceEEEecCC-----------
Confidence 5433333 44456677999999999999999987665454421111 222222222334555555422
Q ss_pred cCCCCCCCCccccCCCCccccccccccccEEEEEEcCCeEEEEEccccccccccccccccCCCcccccccccCcccccCc
Q 000707 374 LDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISISDDGKVWNWLLTAEGAGDLQKDAIKSGMDADVIDVALCGTNTNSMA 453 (1341)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~s~DG~I~lWdl~~~~~~~~~~~~~~~g~~~~~~~v~~~g~~l~~~~ 453 (1341)
|-+++.|.++|.|.++|+.+.+.... +
T Consensus 240 ---------------------------gL~~aVGts~G~v~iyDLRa~~pl~~-k------------------------- 266 (703)
T KOG2321|consen 240 ---------------------------GLHVAVGTSTGSVLIYDLRASKPLLV-K------------------------- 266 (703)
T ss_pred ---------------------------ceeEEeeccCCcEEEEEcccCCceee-c-------------------------
Confidence 56899999999999999976432110 0
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCccccceeEEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEE
Q 000707 454 SSADVQALEAGKQLEHVNGSRNRPSNSTSSQADMSFKVSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVA 533 (1341)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llA 533 (1341)
| ++..-+|..+.|-+. .+++.|+
T Consensus 267 ----------d---------------------------------h~~e~pi~~l~~~~~--------------~~q~~v~ 289 (703)
T KOG2321|consen 267 ----------D---------------------------------HGYELPIKKLDWQDT--------------DQQNKVV 289 (703)
T ss_pred ----------c---------------------------------cCCccceeeeccccc--------------CCCceEE
Confidence 0 011235555666551 1345555
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecC
Q 000707 534 LGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 534 sGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
+ .+...++|||-.+|+....+.. +..++.+++.|++.++-++.+
T Consensus 290 S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 290 S-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred e-cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecC
Confidence 4 4456799999999987766543 345999999998766655543
No 248
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.4e-07 Score=109.80 Aligned_cols=210 Identities=15% Similarity=0.195 Sum_probs=148.3
Q ss_pred CCCCCEEEEEECCCcEEEEeccCCCceeeecc------CceEEEEEcCCCCCCCCCCCCCcccc-cccCCCCCccCCCcc
Q 000707 622 SSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA------LPFTVLEWTLPTVPWPSQTGPSRQSS-LSSKDHKADTTDGVS 694 (1341)
Q Consensus 622 SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~------~~v~~l~wsp~~~~~~~~~~~~k~~~-~~~~~~~~i~~~g~~ 694 (1341)
.|-+.|+|....||.++|||. ..+++...+. ..-+...|.......+ .|-.+ ...+.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~-----~k~~~~~~~~~---------- 65 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSP-----MKWLSLEKAKK---------- 65 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccch-----HHHHhHHHHhh----------
Confidence 355789999999999999998 6776666554 1124566753221111 11000 00000
Q ss_pred cccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEe
Q 000707 695 TPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGD 772 (1341)
Q Consensus 695 ~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs 772 (1341)
...+...++-+...|.|.+|++.+..+.- ++..+ +|.+.|+++.+ +-..|.|++
T Consensus 66 ------------------~s~~t~~lvlgt~~g~v~~ys~~~g~it~---~~st~---~h~~~v~~~~~~~~~~ciyS~~ 121 (541)
T KOG4547|consen 66 ------------------ASLDTSMLVLGTPQGSVLLYSVAGGEITA---KLSTD---KHYGNVNEILDAQRLGCIYSVG 121 (541)
T ss_pred ------------------ccCCceEEEeecCCccEEEEEecCCeEEE---EEecC---CCCCcceeeecccccCceEecC
Confidence 00122456778889999999998777632 22222 68889999998 556899999
Q ss_pred CCCcEEEEECCCCc-eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEE
Q 000707 773 RSGNIRWWDVTTGH-SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLE 851 (1341)
Q Consensus 773 ~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~ 851 (1341)
.|+.+-.|+.+.++ ++.+.+-...+.++..+|| | +.++++ .+.|++||+++.+ +..++ .||. ++|..
T Consensus 122 ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D--~----~~l~~a--s~~ik~~~~~~ke-vv~~f-tgh~--s~v~t 189 (541)
T KOG4547|consen 122 ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD--G----KILLTA--SRQIKVLDIETKE-VVITF-TGHG--SPVRT 189 (541)
T ss_pred CceeEEEEecccceeeeeeccCCCccceEEEcCC--C----CEEEec--cceEEEEEccCce-EEEEe-cCCC--cceEE
Confidence 99999999999987 6778888899999999999 4 677776 5679999999998 65565 7886 78998
Q ss_pred EEEcCC-CCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 852 LDWLPT-RTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 852 l~ws~~-~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
+.|... ....|+. +|.++..+.-|-+|-+...
T Consensus 190 ~~f~~~~~g~~G~~-vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKY-VLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEEeccccccce-eeeccccccceeEEEEEcc
Confidence 888764 1222343 5778888888999988763
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=7.6e-07 Score=98.96 Aligned_cols=247 Identities=18% Similarity=0.293 Sum_probs=149.0
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCc-----EEEEEeecC------------CCeEEEEEcCCCc---EEEEecCCcccccCc
Q 000707 528 AVPLVALGTQSGAVDVVDVSANA-----VTASFSVHN------------GTVRGLRWLGNSR---LVSFSYSQVNEKSGG 587 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~-----~~~~l~~H~------------~~V~~l~fs~d~~---llS~s~d~~~~~sg~ 587 (1341)
+|.+||+|..+|-|.++.-+... ...+++.|. ..|..|+|.+++. ++. +.
T Consensus 36 ~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl-st--------- 105 (433)
T KOG1354|consen 36 YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL-ST--------- 105 (433)
T ss_pred ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE-ec---------
Confidence 68999999999999999754322 344555564 2578899987652 332 22
Q ss_pred ccCeEEEEEccCCce---------------------------------eeeEEeccCCCCCeEEEEECCCCCEEEEEECC
Q 000707 588 YINRLVVTCLRSGIN---------------------------------RAFRVLQKPERAPIRALRASSSGRYLLILFRD 634 (1341)
Q Consensus 588 ~~~~i~lwD~~tG~~---------------------------------~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D 634 (1341)
.+.+|++|-+..... .+.|+....|..-|.+|.++.|+..++++ .|
T Consensus 106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-Dd 184 (433)
T KOG1354|consen 106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DD 184 (433)
T ss_pred CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cc
Confidence 234899998743111 12233334477789999999999998875 67
Q ss_pred CcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccC
Q 000707 635 APVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQD 714 (1341)
Q Consensus 635 ~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~ 714 (1341)
=.|.+|+++.+.+ .|+-+..-|... .++..+.++ + ++. .
T Consensus 185 LRINLWnlei~d~-------sFnIVDIKP~nm-------------------------EeLteVITs----a----EFh-p 223 (433)
T KOG1354|consen 185 LRINLWNLEIIDQ-------SFNIVDIKPANM-------------------------EELTEVITS----A----EFH-P 223 (433)
T ss_pred eeeeeccccccCC-------ceeEEEccccCH-------------------------HHHHHHHhh----h----ccC-H
Confidence 7899999842222 222222221100 000000000 0 111 1
Q ss_pred CCCCeEEEEecCCcEEEEEecCCeeec-----c-cCCCCCC-c-cccccceEEEEee--cCCEEEEEeCCCcEEEEECCC
Q 000707 715 DTSESFAFALANGALGVFEVHGRRIRD-----F-RPKWPSS-S-FISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT 784 (1341)
Q Consensus 715 ~~~e~la~~~~Dg~I~vwdv~~~~v~~-----~-~~~~~~~-~-l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~t 784 (1341)
.....|+..+.-|+|++.|++..-+=+ + .+.-|.. + |.+...+|..+-| .|+++++-+. -+|++||+..
T Consensus 224 ~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm 302 (433)
T KOG1354|consen 224 HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM 302 (433)
T ss_pred hHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence 123678888999999999996432211 0 0111111 1 2334456778888 7899888443 6899999954
Q ss_pred C--ceeeeccCC------------CcE---EEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 785 G--HSSQFSTHR------------EGI---RRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 785 g--~~~~l~gH~------------~~V---~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
. -+.+++.|. ..| ..+.||-+ + .++++|++...++++++..+.
T Consensus 303 e~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~--~----~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 303 EAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN--D----SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC--c----ceEecccccceEEEecCCCCc
Confidence 2 366666663 222 34677766 3 689999999999999976654
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=4.3e-06 Score=102.89 Aligned_cols=235 Identities=14% Similarity=0.184 Sum_probs=134.1
Q ss_pred cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEE
Q 000707 540 AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRAL 619 (1341)
Q Consensus 540 tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i 619 (1341)
.|.++|..... .+.+..+...+....|+|||+.+.+.... .+ ...|.++|+.+|+.+.+.... ......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~----~g--~~~L~~~dl~tg~~~~lt~~~----g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFE----NR--KAEIFVQDIYTQVREKVTSFP----GINGAP 267 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEec----CC--CcEEEEEECCCCCeEEecCCC----CCcCCe
Confidence 56777865433 35566667788999999999766655432 11 247999999998754444322 233467
Q ss_pred EECCCCCEEEE-EECCCc--EEEEeccCCCceeeeccC--ceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcc
Q 000707 620 RASSSGRYLLI-LFRDAP--VEVWAMTKNPIMLRSLAL--PFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVS 694 (1341)
Q Consensus 620 ~~SpdG~~Las-~s~D~~--I~vWDl~~t~~~l~~l~~--~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~ 694 (1341)
+|||||+.|+. ...++. |.+||+ .+++..+.... ......|+|+
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl-~tg~~~~lt~~~~~~~~p~wSpD------------------------------ 316 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDI-ATKALTRITRHRAIDTEPSWHPD------------------------------ 316 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEEC-CCCCeEECccCCCCccceEECCC------------------------------
Confidence 99999998875 456665 666687 56544332111 1234566654
Q ss_pred cccccCCCCCcCCCCCCccCCCCCeEEEEe-cCC--cEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEE
Q 000707 695 TPTIASSSDSKDASSEGSQDDTSESFAFAL-ANG--ALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771 (1341)
Q Consensus 695 ~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg--~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasG 771 (1341)
+..+++.+ .+| .|+++++++...+.+. +. ++...-.+++.||++|+..
T Consensus 317 ----------------------G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--~~-----g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 317 ----------------------GKSLIFTSERGGKPQIYRVNLASGKVSRLT--FE-----GEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred ----------------------CCEEEEEECCCCCceEEEEECCCCCEEEEe--cC-----CCCCcCeeECCCCCEEEEE
Confidence 33444443 233 4566666554443211 11 1111112344499988776
Q ss_pred eC-CC--cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEEC-CC--eEEEEECCCCCccccccccCCCC
Q 000707 772 DR-SG--NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFH-DN--TFSVFDLDSQDPLANSLLQPQFP 845 (1341)
Q Consensus 772 s~-Dg--tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~-Dg--tI~IWDl~~~~~l~~~l~~gh~~ 845 (1341)
+. ++ .|.++|+.+++...+... .......|+|+ | +.|+.... ++ .+.++|.+... . ..+ ..+
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~spd--G----~~I~~~~~~~g~~~l~~~~~~G~~-~-~~l-~~~-- 435 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQVLTST-RLDESPSVAPN--G----TMVIYSTTYQGKQVLAAVSIDGRF-K-ARL-PAG-- 435 (448)
T ss_pred EecCCceEEEEEECCCCCeEEccCC-CCCCCceECCC--C----CEEEEEEecCCceEEEEEECCCCc-e-EEC-cCC--
Confidence 54 34 456678888876554322 22335579999 4 56665543 33 36777875443 1 222 222
Q ss_pred CCcEEEEEEcCC
Q 000707 846 GTLVLELDWLPT 857 (1341)
Q Consensus 846 ~~~V~~l~ws~~ 857 (1341)
.+.+...+|+|.
T Consensus 436 ~g~~~~p~Wsp~ 447 (448)
T PRK04792 436 QGEVKSPAWSPF 447 (448)
T ss_pred CCCcCCCccCCC
Confidence 245677889873
No 251
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.66 E-value=5.7e-06 Score=91.71 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=126.2
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-CCe
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-LRS 122 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~-tg~ 122 (1341)
+.|.|||-...+.+.+|.--. .|.+|+++++ +|+.. -.++|.||.+. +.+
T Consensus 75 NkviIWDD~k~~~i~el~f~~------------~I~~V~l~r~----------------riVvv-l~~~I~VytF~~n~k 125 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNS------------EIKAVKLRRD----------------RIVVV-LENKIYVYTFPDNPK 125 (346)
T ss_pred ceEEEEecccCcEEEEEEecc------------ceeeEEEcCC----------------eEEEE-ecCeEEEEEcCCChh
Confidence 679999977777777776544 7999999986 35544 46799999997 567
Q ss_pred EEEEecCCCCCCCCeeEEEEeecCCCccEEEE-EeCCCeEEEEECCCCeE--EEEEeCCCCceEEEEEcCCCCCEEEEEe
Q 000707 123 VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAA-INGPSVLSLYNTTSASC--MWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1341)
Q Consensus 123 ~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas-~s~d~~i~lWd~~tg~~--i~~~~~~~~~v~~~~fsP~d~~~la~~~ 199 (1341)
.++.++.....+ +..++ .|... ..+||- +..-|.|+|=|+..-+. .....+|...|.|++.+- +|..+|++|
T Consensus 126 ~l~~~et~~NPk-GlC~~--~~~~~-k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaS 200 (346)
T KOG2111|consen 126 LLHVIETRSNPK-GLCSL--CPTSN-KSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATAS 200 (346)
T ss_pred heeeeecccCCC-ceEee--cCCCC-ceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEec
Confidence 788876665556 54443 34332 144443 33458999988764332 245677888999999998 999999999
Q ss_pred CCCe-EEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEE
Q 000707 200 LKGL-LLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELV 278 (1341)
Q Consensus 200 ~dG~-i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~ 278 (1341)
.+|+ |++||.... ..+++ +++.. .+..+.+++||||...++.++..++|.
T Consensus 201 tkGTLIRIFdt~~g----~~l~E------------~RRG~-------------d~A~iy~iaFSp~~s~LavsSdKgTlH 251 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDG----TLLQE------------LRRGV-------------DRADIYCIAFSPNSSWLAVSSDKGTLH 251 (346)
T ss_pred cCcEEEEEEEcCCC----cEeee------------eecCC-------------chheEEEEEeCCCccEEEEEcCCCeEE
Confidence 9986 457764321 11222 33311 122477789999999999999999999
Q ss_pred EEEcCCC
Q 000707 279 VFDLQYE 285 (1341)
Q Consensus 279 iwDl~t~ 285 (1341)
||.++..
T Consensus 252 iF~l~~~ 258 (346)
T KOG2111|consen 252 IFSLRDT 258 (346)
T ss_pred EEEeecC
Confidence 9999863
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.64 E-value=3.4e-05 Score=92.99 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=116.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCC
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPE 180 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~ 180 (1341)
+.+|..++.+|.|.-+|..+|+.+-.+.+.+ .+.. .-..++ ..+..++.++.+..+|..+|+.+|+.... +
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~----~~~~-~p~v~~---~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~ 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE----RLSG-GVGADG---GLVFVGTEKGEVIALDAEDGKELWRAKLS-S 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC----Cccc-ceEEcC---CEEEEEcCCCEEEEEECCCCcEeeeeccC-c
Confidence 5678888899999999999998876654432 1111 001122 56667778999999999999999998763 3
Q ss_pred ceEEEEEcCC-CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 181 YLSCIRRNPF-DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 181 ~v~~~~fsP~-d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
.+. -+|. ++.++.+.+.+|.++.+|..... ..|......... .+. ....|
T Consensus 136 ~~~---~~p~v~~~~v~v~~~~g~l~a~d~~tG~------~~W~~~~~~~~~-~~~-------------~~~sp------ 186 (377)
T TIGR03300 136 EVL---SPPLVANGLVVVRTNDGRLTALDAATGE------RLWTYSRVTPAL-TLR-------------GSASP------ 186 (377)
T ss_pred eee---cCCEEECCEEEEECCCCeEEEEEcCCCc------eeeEEccCCCce-eec-------------CCCCC------
Confidence 222 1221 34567777788999999864311 111110000000 000 00001
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCc--cc---eEEEEEcC--CCCEEEEEecCCcEEEEeccCCcee
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC--AK---FLDVLADP--NNDLLYCAHLDGKLSIWRRKEGEQV 332 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~~---~~~v~~~p--dg~~L~s~~~DgtI~lW~~~~g~~~ 332 (1341)
.+. + ..++++..++.+..+|+++|+.+......... .. ...+..+| .++.++.++.+|.+..+|.++|+.+
T Consensus 187 ~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 187 VIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred EEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 111 2 35666667899999999999887654332110 00 01111112 4678899999999999999999866
Q ss_pred eee
Q 000707 333 HVM 335 (1341)
Q Consensus 333 ~~~ 335 (1341)
+..
T Consensus 265 W~~ 267 (377)
T TIGR03300 265 WKR 267 (377)
T ss_pred Eee
Confidence 543
No 253
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=5.1e-06 Score=101.56 Aligned_cols=234 Identities=12% Similarity=0.115 Sum_probs=136.0
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEE---EecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCC
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVS---FSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAP 615 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS---~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~ 615 (1341)
+.|.+.|...+. .+.+..+...+..=.|+|||+-+. .++. .| ...|.+.++.+|+.+.+..+.+ .
T Consensus 165 ~~l~~~d~dG~~-~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~-----~g--~~~I~~~~l~~g~~~~lt~~~g----~ 232 (428)
T PRK01029 165 GELWSVDYDGQN-LRPLTQEHSLSITPTWMHIGSGFPYLYVSYK-----LG--VPKIFLGSLENPAGKKILALQG----N 232 (428)
T ss_pred ceEEEEcCCCCC-ceEcccCCCCcccceEccCCCceEEEEEEcc-----CC--CceEEEEECCCCCceEeecCCC----C
Confidence 356677765443 344544555667779999985322 2331 11 2478899999988666554333 3
Q ss_pred eEEEEECCCCCEEEEEEC-CC----cEEEEeccCCC---ceeeeccC---ceEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 616 IRALRASSSGRYLLILFR-DA----PVEVWAMTKNP---IMLRSLAL---PFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 616 I~~i~~SpdG~~Las~s~-D~----~I~vWDl~~t~---~~l~~l~~---~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
....+|||||++||..+. ++ .+.+|++ ..+ ...+.... ......|+|+
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~-~~g~~g~~~~lt~~~~~~~~~p~wSPD-------------------- 291 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL-ETGAIGKPRRLLNEAFGTQGNPSFSPD-------------------- 291 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeec-ccCCCCcceEeecCCCCCcCCeEECCC--------------------
Confidence 346799999999986653 22 3444666 332 21121111 1123455544
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEe-cCCcEEEE--EecC--CeeecccCCCCCCccccccceEE
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFAL-ANGALGVF--EVHG--RRIRDFRPKWPSSSFISSDGLIT 759 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~-~Dg~I~vw--dv~~--~~v~~~~~~~~~~~l~~~~~~v~ 759 (1341)
+..+++.+ .+|...+| ++++ ...+.+ +.+.+.+.
T Consensus 292 --------------------------------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l---------t~~~~~~~ 330 (428)
T PRK01029 292 --------------------------------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL---------TKKYRNSS 330 (428)
T ss_pred --------------------------------CCEEEEEECCCCCceEEEEECcccccceEEe---------ccCCCCcc
Confidence 45566654 45654454 4432 222111 11112344
Q ss_pred EEee--cCCEEEEEeCC---CcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEEC---CCeEEEEECCC
Q 000707 760 AMAY--RLPHVVMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFH---DNTFSVFDLDS 831 (1341)
Q Consensus 760 sla~--dg~~LasGs~D---gtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~---DgtI~IWDl~~ 831 (1341)
..+| ||+.|+..+.+ ..|.+||+.+++.+.+......+....|+|+ | +.|+.... ...|.+||+.+
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpD--G----~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAID--S----LHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCC--C----CEEEEEECCCCCceEEEEECCC
Confidence 5555 99988876543 4699999999987777555557788999999 4 56665432 45688889988
Q ss_pred CCccccccccCCCCCCcEEEEEEcCC
Q 000707 832 QDPLANSLLQPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 832 ~~~l~~~l~~gh~~~~~V~~l~ws~~ 857 (1341)
++.. .+..+ .+.+...+|+|.
T Consensus 405 g~~~--~Lt~~---~g~~~~p~Ws~~ 425 (428)
T PRK01029 405 KKTR--KIVIG---SGEKRFPSWGAF 425 (428)
T ss_pred CCEE--EeecC---CCcccCceecCC
Confidence 7632 22111 234677889875
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=4.5e-06 Score=102.01 Aligned_cols=205 Identities=13% Similarity=0.134 Sum_probs=119.7
Q ss_pred EEeCCC--cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCce-eeeEEecc
Q 000707 534 LGTQSG--AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-RAFRVLQK 610 (1341)
Q Consensus 534 sGs~DG--tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-~~l~~l~~ 610 (1341)
+...+| .|.+.|+.+|+..+ +....+.....+|+|||+.|++..+. .|..+-.+.+||+.+|.. ...+...+
T Consensus 204 ~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~----~g~~di~~~~~~~~~g~~g~~~~lt~~ 278 (428)
T PRK01029 204 VSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDR----YGNPDLFIQSFSLETGAIGKPRRLLNE 278 (428)
T ss_pred EEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECC----CCCcceeEEEeecccCCCCcceEeecC
Confidence 444444 47777888776432 33334455678999999777666542 233333456688765321 12222222
Q ss_pred CCCCCeEEEEECCCCCEEEEEE-CCCcEEEEecc-C-CCceeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCC
Q 000707 611 PERAPIRALRASSSGRYLLILF-RDAPVEVWAMT-K-NPIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKD 684 (1341)
Q Consensus 611 ~~~~~I~~i~~SpdG~~Las~s-~D~~I~vWDl~-~-t~~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~ 684 (1341)
+........|||||++|+..+ .++..+||.+. . .+...+.+. ..+....|+|+
T Consensus 279 -~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPD-------------------- 337 (428)
T PRK01029 279 -AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPD-------------------- 337 (428)
T ss_pred -CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCC--------------------
Confidence 222345679999999988766 46766777541 1 111122221 12344566655
Q ss_pred CCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecC---CcEEEEEecCCeeecccCCCCCCccccccceEEEE
Q 000707 685 HKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALAN---GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAM 761 (1341)
Q Consensus 685 ~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~D---g~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sl 761 (1341)
++.+++...+ ..|++||+.+...+.+. .....+...
T Consensus 338 --------------------------------G~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt---------~~~~~~~~p 376 (428)
T PRK01029 338 --------------------------------GKKIAFCSVIKGVRQICVYDLATGRDYQLT---------TSPENKESP 376 (428)
T ss_pred --------------------------------CCEEEEEEcCCCCcEEEEEECCCCCeEEcc---------CCCCCccce
Confidence 3455555432 36889999766554321 111224456
Q ss_pred ee--cCCEEEEEeC---CCcEEEEECCCCceeeeccCCCcEEEEEEccC
Q 000707 762 AY--RLPHVVMGDR---SGNIRWWDVTTGHSSQFSTHREGIRRIKFSPV 805 (1341)
Q Consensus 762 a~--dg~~LasGs~---DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~ 805 (1341)
+| ||++|+.... ...|.+||+.+++.+.+....+.+...+|||-
T Consensus 377 ~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 377 SWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCC
Confidence 66 8888775432 45788999988887666556677888899885
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.62 E-value=8e-05 Score=87.53 Aligned_cols=272 Identities=14% Similarity=0.160 Sum_probs=159.0
Q ss_pred CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcc-cccCcccCeEEEEEccCCceeeeEEeccCCC----
Q 000707 539 GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVN-EKSGGYINRLVVTCLRSGINRAFRVLQKPER---- 613 (1341)
Q Consensus 539 GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~-~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~---- 613 (1341)
|+|.+.|..+++++..+..-..+- .+ +++|++.+-.+..... ..-|-.++.|.+||+.|++ .++.+.-+..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~ 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFL 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhh
Confidence 899999999999988887554433 35 8999865433322000 0113334689999999988 5554432211
Q ss_pred --CCeEEEEECCCCCEEEEEE-C-CCcEEEEeccCCCceeeeccCce--EEEEEcCCCCCCCCCCCCCcccccccCCCCC
Q 000707 614 --APIRALRASSSGRYLLILF-R-DAPVEVWAMTKNPIMLRSLALPF--TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKA 687 (1341)
Q Consensus 614 --~~I~~i~~SpdG~~Las~s-~-D~~I~vWDl~~t~~~l~~l~~~v--~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~ 687 (1341)
.....+++||||++|.+.. . +..|-|.|+ .+++.+.++.-+- ....++
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~-~~~kvv~ei~vp~~~~vy~t~------------------------- 156 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDL-EGKAFVRMMDVPDCYHIFPTA------------------------- 156 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEEC-CCCcEEEEEeCCCCcEEEEec-------------------------
Confidence 1224789999999998764 4 789999999 6888877654211 011111
Q ss_pred ccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEe--cCCeeecccCCCCC-CccccccceEEEEee-
Q 000707 688 DTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPS-SSFISSDGLITAMAY- 763 (1341)
Q Consensus 688 i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv--~~~~v~~~~~~~~~-~~l~~~~~~v~sla~- 763 (1341)
.+.+.+.+.||+.....+ +|+....-.+.+.. ..... ... .+..
T Consensus 157 -----------------------------e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~-~rP--~~~~~ 204 (352)
T TIGR02658 157 -----------------------------NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI-NHP--AYSNK 204 (352)
T ss_pred -----------------------------CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc-cCC--ceEcC
Confidence 011223334444443333 12111000000000 00000 011 2233
Q ss_pred cCCEEEEEeCCCcEEEEECCCCc------eeeec-------cCCCcEEEEEEccCCCCCCCCCEEEEEE----------C
Q 000707 764 RLPHVVMGDRSGNIRWWDVTTGH------SSQFS-------THREGIRRIKFSPVVPGDRSRGRIAVLF----------H 820 (1341)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~tg~------~~~l~-------gH~~~V~~V~fSP~~~gd~~~~~Las~s----------~ 820 (1341)
||+.+..... |+|.+-|+.... ...+. -..+.+.-++++|+ + +++.++. .
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d--g----~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA--R----DRIYLLADQRAKWTHKTA 277 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC--C----CEEEEEecCCccccccCC
Confidence 7777666555 999999965432 11111 13345556999998 4 6766642 1
Q ss_pred CCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCCceec
Q 000707 821 DNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTEKKIG 888 (1341)
Q Consensus 821 DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~~~~~ 888 (1341)
.+.|.++|..+++.+.+ +..| ..+..++++|| +++++.++...++.|.|.|+.+.+.+.
T Consensus 278 ~~~V~ViD~~t~kvi~~-i~vG----~~~~~iavS~D----gkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRK-IELG----HEIDSINVSQD----AKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCEEEEEECCCCeEEEE-EeCC----CceeeEEECCC----CCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 25799999999885433 3233 46899999998 665555555578999999999887654
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=4.3e-06 Score=102.62 Aligned_cols=218 Identities=12% Similarity=0.077 Sum_probs=130.3
Q ss_pred cCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEE
Q 000707 500 LSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQS---GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSF 576 (1341)
Q Consensus 500 ~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~D---GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~ 576 (1341)
+...+...+|+| +|+.||..+.+ ..|.+||+.+|.... +....+.+....|+|||+.+.+
T Consensus 197 ~~~~~~~p~wSp----------------DG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 197 SREPILSPRWSP----------------DGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred CCCceeeeeECC----------------CCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEE
Confidence 345677888888 57777665533 369999999887543 3333344567899999976665
Q ss_pred ecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEEC-CC--cEEEEeccCCCceeeec-
Q 000707 577 SYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFR-DA--PVEVWAMTKNPIMLRSL- 652 (1341)
Q Consensus 577 s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~-D~--~I~vWDl~~t~~~l~~l- 652 (1341)
+.+. .| +..|.++|+.+++.+.+ .. +........|+|||+.|+..+. ++ .|.++|+ .+++..+..
T Consensus 260 ~~~~----~g--~~~Iy~~d~~~~~~~~l---t~-~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~-~~g~~~~lt~ 328 (430)
T PRK00178 260 VLSK----DG--NPEIYVMDLASRQLSRV---TN-HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV-NGGRAERVTF 328 (430)
T ss_pred EEcc----CC--CceEEEEECCCCCeEEc---cc-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC-CCCCEEEeec
Confidence 5432 11 24789999998874333 22 3334566789999998876653 33 4666676 455432211
Q ss_pred cCc-eEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEec-CC--c
Q 000707 653 ALP-FTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALA-NG--A 728 (1341)
Q Consensus 653 ~~~-v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~-Dg--~ 728 (1341)
... .....|+|+ +..+++... ++ .
T Consensus 329 ~~~~~~~~~~Spd----------------------------------------------------g~~i~~~~~~~~~~~ 356 (430)
T PRK00178 329 VGNYNARPRLSAD----------------------------------------------------GKTLVMVHRQDGNFH 356 (430)
T ss_pred CCCCccceEECCC----------------------------------------------------CCEEEEEEccCCceE
Confidence 111 112345543 345555543 23 4
Q ss_pred EEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCC---CcEEEEECCCCceeeeccCCCcEEEEEEccC
Q 000707 729 LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRS---GNIRWWDVTTGHSSQFSTHREGIRRIKFSPV 805 (1341)
Q Consensus 729 I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~D---gtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~ 805 (1341)
|.++|+.+...+.+... +... -.+++.||++|+..+.+ ..|.++++..+..+.+..+.+.+...+|||-
T Consensus 357 l~~~dl~tg~~~~lt~~-------~~~~-~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 357 VAAQDLQRGSVRILTDT-------SLDE-SPSVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EEEEECCCCCEEEccCC-------CCCC-CceECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 77788866544332110 0111 12445599988876544 3477778865555567667778888888874
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.62 E-value=5.5e-06 Score=102.00 Aligned_cols=210 Identities=12% Similarity=0.157 Sum_probs=119.2
Q ss_pred CeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECC-C--cEEEEeccCCCcee--eeccCceEEEEEcCC
Q 000707 590 NRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD-A--PVEVWAMTKNPIML--RSLALPFTVLEWTLP 664 (1341)
Q Consensus 590 ~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D-~--~I~vWDl~~t~~~l--~~l~~~v~~l~wsp~ 664 (1341)
.+|.++|...+..+.+. . +..++...+|||||++|+..+.+ + .|.+||+ .+++.. ..+........|+|+
T Consensus 198 ~~l~i~d~dG~~~~~l~---~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl-~tg~~~~lt~~~g~~~~~~wSPD 272 (448)
T PRK04792 198 YQLMIADYDGYNEQMLL---R-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDI-YTQVREKVTSFPGINGAPRFSPD 272 (448)
T ss_pred eEEEEEeCCCCCceEee---c-CCCcccCceECCCCCEEEEEEecCCCcEEEEEEC-CCCCeEEecCCCCCcCCeeECCC
Confidence 36777887554433332 2 34578889999999999876543 3 4788888 565432 222222234567655
Q ss_pred CCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEE-EecCCc--EEEEEecCCeeec
Q 000707 665 TVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAF-ALANGA--LGVFEVHGRRIRD 741 (1341)
Q Consensus 665 ~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~-~~~Dg~--I~vwdv~~~~v~~ 741 (1341)
++.+++ ...+|. |+++|+++..++.
T Consensus 273 ----------------------------------------------------G~~La~~~~~~g~~~Iy~~dl~tg~~~~ 300 (448)
T PRK04792 273 ----------------------------------------------------GKKLALVLSKDGQPEIYVVDIATKALTR 300 (448)
T ss_pred ----------------------------------------------------CCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence 344554 345665 7777877665543
Q ss_pred ccCCCCCCccccccceEEEEee--cCCEEEEEe-CCC--cEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEE
Q 000707 742 FRPKWPSSSFISSDGLITAMAY--RLPHVVMGD-RSG--NIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIA 816 (1341)
Q Consensus 742 ~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs-~Dg--tI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~La 816 (1341)
+. .+.......+| ||+.|+..+ .+| .|.++|+.+++...+..+.......+|+|+ | ++|+
T Consensus 301 lt---------~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD--G----~~l~ 365 (448)
T PRK04792 301 IT---------RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD--G----RSMI 365 (448)
T ss_pred Cc---------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC--C----CEEE
Confidence 21 11222344556 888877654 344 466678888875544323334456789999 5 5676
Q ss_pred EEEC-CCe--EEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCc--EEEEEcc
Q 000707 817 VLFH-DNT--FSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSS--FRLIEVN 882 (1341)
Q Consensus 817 s~s~-Dgt--I~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~Dgt--IrvWdv~ 882 (1341)
..+. ++. |.++|+.+++. ..+ ... .......|+|+ |+. ++.+...+|. +.+++.+
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~--~~l-t~~---~~d~~ps~spd----G~~-I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAM--QVL-TST---RLDESPSVAPN----GTM-VIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEEecCCceEEEEEECCCCCe--EEc-cCC---CCCCCceECCC----CCE-EEEEEecCCceEEEEEECC
Confidence 6543 444 44568877752 122 211 12234579998 553 3445555555 4555554
No 258
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.60 E-value=3.3e-06 Score=100.41 Aligned_cols=193 Identities=11% Similarity=0.107 Sum_probs=134.8
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCC-----------------CccEEEEEeCCCeE
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKP-----------------DSFVLAAINGPSVL 161 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~-----------------~~~lLas~s~d~~i 161 (1341)
|.+.++|..+.||.++|||+..++....|....+....-.++.|.-.-+ +..+|+=|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4578899999999999999999998888743223222556667742111 11455556778999
Q ss_pred EEEECCCCeEEEEEe--CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 162 SLYNTTSASCMWKYD--ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 162 ~lWd~~tg~~i~~~~--~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
.++++..|+.-+++. .|.+.|+++..+. +...|-+++.|+.+..|++.... ...+|.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~----~~~~~~---------------- 141 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV----IIRIWK---------------- 141 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce----eeeeec----------------
Confidence 999999999888876 4567888887776 88889999999999998763311 012221
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCC-----CCEEE-
Q 000707 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN-----NDLLY- 313 (1341)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd-----g~~L~- 313 (1341)
. .+..+.+++++|||+.+++++ ++|.+||+++++.+..++. |.+++..+.|.-+ |+++.
T Consensus 142 ~-----------~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 142 E-----------QKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred c-----------CCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeee
Confidence 1 011245679999999877665 8999999999999988864 4566666666543 55444
Q ss_pred EEecCCcEEEEecc
Q 000707 314 CAHLDGKLSIWRRK 327 (1341)
Q Consensus 314 s~~~DgtI~lW~~~ 327 (1341)
+...+.-|.+|-+.
T Consensus 207 sa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 207 SAAAERGITVWVVE 220 (541)
T ss_pred ccccccceeEEEEE
Confidence 44445556778654
No 259
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.60 E-value=6.7e-07 Score=111.77 Aligned_cols=195 Identities=13% Similarity=0.031 Sum_probs=138.9
Q ss_pred eEeCCC-CeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE
Q 000707 30 ADLSPS-GLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1341)
Q Consensus 30 ~~~s~~-gllA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1341)
..+... ..+|.+ +++++.|||+..+..++.+..... ++-+..--+.+++ +..++|+|
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er-------~~l~~~~~~g~s~--------------~~~~i~~g 151 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDER-------CTLYSSLIIGDSA--------------EELYIASG 151 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCce-------EEEEeEEEEeccC--------------cEEEEEec
Confidence 334444 356654 678999999988776655433221 1111222233443 45789999
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-EEeCCCCceEEEE
Q 000707 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW-KYDASPEYLSCIR 186 (1341)
Q Consensus 108 ~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~-~~~~~~~~v~~~~ 186 (1341)
+.-|.|++|+...-..... +.||.+ .|.++.|+.|+ +++++++.|.++++|++++++... ..-+|+..+..+.
T Consensus 152 sv~~~iivW~~~~dn~p~~--l~GHeG-~iF~i~~s~dg---~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 152 SVFGEIIVWKPHEDNKPIR--LKGHEG-SIFSIVTSLDG---RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC 225 (967)
T ss_pred cccccEEEEeccccCCcce--ecccCC-ceEEEEEccCC---cEEEEEecCcceeeeecccccccCcccccccceeEEEE
Confidence 9999999999863222222 478988 99999999887 899999999999999999988665 3334677899999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC
Q 000707 187 RNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR 266 (1341)
Q Consensus 187 fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~ 266 (1341)
|.|+ ++++++.|.+.++|+..+. .+ ...+.+. -..+.++++.++.-
T Consensus 226 ~~~n---~i~t~gedctcrvW~~~~~--------~l---------~~y~~h~--------------g~~iw~~~~~~~~~ 271 (967)
T KOG0974|consen 226 FLPN---RIITVGEDCTCRVWGVNGT--------QL---------EVYDEHS--------------GKGIWKIAVPIGVI 271 (967)
T ss_pred eccc---eeEEeccceEEEEEecccc--------ee---------hhhhhhh--------------hcceeEEEEcCCce
Confidence 9984 9999999999999965432 11 1111110 11366788999888
Q ss_pred ceEEEEcCCeEEEEEcCCC
Q 000707 267 HIIFVTFPRELVVFDLQYE 285 (1341)
Q Consensus 267 ~l~~~~~d~~I~iwDl~t~ 285 (1341)
.+++++.|+.+++||+...
T Consensus 272 ~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 272 IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EEEeeccCcchhhhhhhcc
Confidence 8899999999999999753
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=6.6e-05 Score=88.96 Aligned_cols=131 Identities=14% Similarity=0.196 Sum_probs=91.9
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCC--EEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEec
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVP--LVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSY 578 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~--llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~ 578 (1341)
.+||.++.|+| .++ -++-|-+=-+|-|+|+. +.++..| -.++=+++-|+|.|+++.++.
T Consensus 270 ~GPVhdv~W~~----------------s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAG 330 (566)
T KOG2315|consen 270 EGPVHDVTWSP----------------SGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAG 330 (566)
T ss_pred CCCceEEEECC----------------CCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEee
Confidence 47899999998 243 35567888899999984 4454443 456778899999998776654
Q ss_pred CCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEE------CCCcEEEEeccCCCceeeec
Q 000707 579 SQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILF------RDAPVEVWAMTKNPIMLRSL 652 (1341)
Q Consensus 579 d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s------~D~~I~vWDl~~t~~~l~~l 652 (1341)
.|.-.+.+-+||+.+-+ .+..+. ...-+-+.|+|||+|++++. -|+.++||+. +|.++...
T Consensus 331 ------FGNL~G~mEvwDv~n~K--~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy--tG~~l~~~ 397 (566)
T KOG2315|consen 331 ------FGNLPGDMEVWDVPNRK--LIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY--TGSLLHEK 397 (566)
T ss_pred ------cCCCCCceEEEeccchh--hccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe--cCceeehh
Confidence 23345789999998854 444332 23346689999999999875 3789999998 67776542
Q ss_pred c-C-ceEEEEEcC
Q 000707 653 A-L-PFTVLEWTL 663 (1341)
Q Consensus 653 ~-~-~v~~l~wsp 663 (1341)
. . ....++|-|
T Consensus 398 ~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 398 MFKSELLQVEWRP 410 (566)
T ss_pred hhhHhHhheeeee
Confidence 2 1 134567764
No 261
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.56 E-value=0.00013 Score=87.94 Aligned_cols=232 Identities=15% Similarity=0.200 Sum_probs=136.4
Q ss_pred CCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcE
Q 000707 35 SGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRV 113 (1341)
Q Consensus 35 ~gllA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I 113 (1341)
++.+..+ .++.|.-+|+.+|+.+-....... .... |..++.++..++.+|.+
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-----------~~~~----------------p~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-----------LSGG----------------VGADGGLVFVGTEKGEV 117 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-----------cccc----------------eEEcCCEEEEEcCCCEE
Confidence 4544444 456888999999988755444332 0001 11235678888899999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEE--EcC-C
Q 000707 114 ALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIR--RNP-F 190 (1341)
Q Consensus 114 ~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~--fsP-~ 190 (1341)
..+|..+|+.+-..... + .+.+..-.. + ..+.....++.|..||..+|+.+|++......+. +. -+| .
T Consensus 118 ~ald~~tG~~~W~~~~~---~-~~~~~p~v~-~---~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~~~~~sp~~ 188 (377)
T TIGR03300 118 IALDAEDGKELWRAKLS---S-EVLSPPLVA-N---GLVVVRTNDGRLTALDAATGERLWTYSRVTPALT-LRGSASPVI 188 (377)
T ss_pred EEEECCCCcEeeeeccC---c-eeecCCEEE-C---CEEEEECCCCeEEEEEcCCCceeeEEccCCCcee-ecCCCCCEE
Confidence 99999999887554332 1 222111111 1 3555567789999999999999999866332211 10 011 0
Q ss_pred CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecC--c--chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCC
Q 000707 191 DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTD--C--TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWR 266 (1341)
Q Consensus 191 d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~--~--~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~ 266 (1341)
.+..+.++..+|.+..+|..... ..|..... . ....++.. . ...| .+ ++.
T Consensus 189 ~~~~v~~~~~~g~v~ald~~tG~------~~W~~~~~~~~g~~~~~~~~~---~---------~~~p------~~--~~~ 242 (377)
T TIGR03300 189 ADGGVLVGFAGGKLVALDLQTGQ------PLWEQRVALPKGRTELERLVD---V---------DGDP------VV--DGG 242 (377)
T ss_pred ECCEEEEECCCCEEEEEEccCCC------EeeeeccccCCCCCchhhhhc---c---------CCcc------EE--ECC
Confidence 22466677778888888863311 11110000 0 00000000 0 0000 11 244
Q ss_pred ceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeee
Q 000707 267 HIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1341)
Q Consensus 267 ~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1341)
.+..++.++.+..||.++|+.+....... .. .+..+++.||.++.||.|..+|..+|+.++.
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~~~~~----~~--~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~ 304 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKRDASS----YQ--GPAVDDNRLYVTDADGVVVALDRRSGSELWK 304 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEeeccCC----cc--CceEeCCEEEEECCCCeEEEEECCCCcEEEc
Confidence 67777789999999999999887654221 11 1223577899999999999999999985543
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6.1e-06 Score=97.43 Aligned_cols=241 Identities=16% Similarity=0.178 Sum_probs=150.4
Q ss_pred ceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE
Q 000707 29 SADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA 107 (1341)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg 107 (1341)
+..||+|. +.|.-..+.|.++|..+.+.+.. +.|.. .|+...+||.+.+..+.- -...++
T Consensus 130 ~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~-----------~i~~f~lSpgp~~~~vAv-------yvPe~k 190 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVS-----------GITMLSLSPGPEPPFVAV-------YVPEKK 190 (566)
T ss_pred ccccccchhhhhhhhcceEEEEecCCccceee-eeecc-----------ceeeEEecCCCCCceEEE-------EccCCC
Confidence 56677776 55556778999999988665432 34555 799999999754422211 112245
Q ss_pred eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCcc-EEEEEe---------CCCeEEEEECCCCeEEEEEeC
Q 000707 108 DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSF-VLAAIN---------GPSVLSLYNTTSASCMWKYDA 177 (1341)
Q Consensus 108 ~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~-lLas~s---------~d~~i~lWd~~tg~~i~~~~~ 177 (1341)
+.-+.||||.+..+..-..+..+..-+..=..+.|.+-+. +- +|++.. +..++.+.++.+-.+...+..
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt-~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT-ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCc-eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 6778999999863322111111111110123356776552 12 223322 335888888874455545554
Q ss_pred CCCceEEEEEcCCCCCEEEEEeC--CCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccc
Q 000707 178 SPEYLSCIRRNPFDARHFCVLGL--KGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLY 255 (1341)
Q Consensus 178 ~~~~v~~~~fsP~d~~~la~~~~--dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1341)
.++|.++.|+| +++.||++.. =-.+-++|+.+..- ..+ . .+ |
T Consensus 270 -~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~v-----~df-----------------~---------eg-p-- 313 (566)
T KOG2315|consen 270 -EGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKPV-----FDF-----------------P---------EG-P-- 313 (566)
T ss_pred -CCCceEEEECC-CCCEEEEEEecccceEEEEcCCCCEe-----EeC-----------------C---------CC-C--
Confidence 68999999999 8998888742 23566666544211 100 0 00 1
Q ss_pred eEEEEEccCCCceEEEEc---CCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEe------cCCcEEEEec
Q 000707 256 MVKFTFSPHWRHIIFVTF---PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH------LDGKLSIWRR 326 (1341)
Q Consensus 256 v~~~afSpdg~~l~~~~~---d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~------~DgtI~lW~~ 326 (1341)
=..+-|+|.|+.++.+++ .|.|-|||+...+.+..+... .-.-+.+||||++++++. .|..++||+.
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~----~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA----NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC----CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence 123479999999999996 478999999998888766432 223355799999999875 4788999997
Q ss_pred cCCc
Q 000707 327 KEGE 330 (1341)
Q Consensus 327 ~~g~ 330 (1341)
. |.
T Consensus 390 t-G~ 392 (566)
T KOG2315|consen 390 T-GS 392 (566)
T ss_pred c-Cc
Confidence 5 44
No 263
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.52 E-value=0.0017 Score=86.10 Aligned_cols=263 Identities=18% Similarity=0.311 Sum_probs=145.2
Q ss_pred CCCEEEEEeC---CC---cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCc
Q 000707 528 AVPLVALGTQ---SG---AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI 601 (1341)
Q Consensus 528 ~~~llAsGs~---DG---tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1341)
||.++|+.+. .| .||||+-+ |.+...-..-.+--..++|.|.|.+|+.+.... .+..|..|. ++|.
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~------~~~~VvFfE-rNGL 291 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLP------DRHDVVFFE-RNGL 291 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcC------CCcEEEEEe-cCCc
Confidence 8999998875 34 79999975 655443332222234579999999887665321 123555554 4553
Q ss_pred -eeeeEEec-cCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCcee--eecc----CceEEEEEcCCCCCCCCCCC
Q 000707 602 -NRAFRVLQ-KPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIML--RSLA----LPFTVLEWTLPTVPWPSQTG 673 (1341)
Q Consensus 602 -~~~l~~l~-~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l--~~l~----~~v~~l~wsp~~~~~~~~~~ 673 (1341)
...|. ++ .+....|..+.|++|+..||+...|. |++|-. .+-.-. +.+. ..+..+.|+|..
T Consensus 292 rhgeF~-l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~-~NYHWYLKqei~~~~~~~~~~~~Wdpe~-------- 360 (928)
T PF04762_consen 292 RHGEFT-LRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR-SNYHWYLKQEIRFSSSESVNFVKWDPEK-------- 360 (928)
T ss_pred EeeeEe-cCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe-eCCEEEEEEEEEccCCCCCCceEECCCC--------
Confidence 11222 12 13456899999999999999987665 999977 443321 1111 112336777541
Q ss_pred CCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCcccc
Q 000707 674 PSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFIS 753 (1341)
Q Consensus 674 ~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~ 753 (1341)
...|.....+|.+..++..-..... ...+ .
T Consensus 361 -------------------------------------------p~~L~v~t~~g~~~~~~~~~~v~~s--~~~~-----~ 390 (928)
T PF04762_consen 361 -------------------------------------------PLRLHVLTSNGQYEIYDFAWDVSRS--PGSS-----P 390 (928)
T ss_pred -------------------------------------------CCEEEEEecCCcEEEEEEEEEEEec--CCCC-----c
Confidence 1345566666777665542111110 0000 1
Q ss_pred ccceEEEEeecCCEEEEEeCCCcEEEEECCCCce------eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEE
Q 000707 754 SDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHS------SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827 (1341)
Q Consensus 754 ~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~~------~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IW 827 (1341)
++..+ ....||+. +++=.++..-+ ..+ .-...|..|+|++. + ..+|+...||+|.+|
T Consensus 391 ~D~g~-vaVIDG~~---------lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~--~----~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 391 NDNGT-VAVIDGNK---------LLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS--N----SRFAVLTSDGSLSIY 453 (928)
T ss_pred cCceE-EEEEeCCe---------EEEecccccCCCchHhceEE-cCCCCcEEEEEeCC--C----CeEEEEECCCCEEEE
Confidence 11111 11125543 44445544321 222 23578999999998 3 458999999999999
Q ss_pred ECCCCCcc-------cccccc-----CC--CCCCcEEEEEEcCCCCCCCCCeEEEEEEC---CCcEEEEEcc
Q 000707 828 DLDSQDPL-------ANSLLQ-----PQ--FPGTLVLELDWLPTRTDKNDPLVLCIAGA---DSSFRLIEVN 882 (1341)
Q Consensus 828 Dl~~~~~l-------~~~l~~-----gh--~~~~~V~~l~ws~~~~~~g~~~~Las~s~---DgtIrvWdv~ 882 (1341)
+....... ...+.. .+ .....+..+.|..+ +.+ ++.... -..+.++++.
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 454 EWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLND-----DTL-LVLSDSDSNQSKIVLVDID 519 (928)
T ss_pred EecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCC-----CEE-EEEEecCcccceEEEEEec
Confidence 85443211 001100 00 01245788999876 333 333333 3678888874
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.51 E-value=0.0013 Score=78.24 Aligned_cols=193 Identities=16% Similarity=0.149 Sum_probs=113.6
Q ss_pred CcEEEEeC--CCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC----CCeEEEEECCC--CeE--EEEEeCCCC
Q 000707 111 GRVALLDF--RLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING----PSVLSLYNTTS--ASC--MWKYDASPE 180 (1341)
Q Consensus 111 G~I~vWDv--~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~----d~~i~lWd~~t--g~~--i~~~~~~~~ 180 (1341)
+.|.++++ .+|+....-.... .. ....|+++|++ ++|-+... ++.|..|.+.. |+. +........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~-~~-~Ps~l~~~~~~---~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAE-GE-NPSWLAVSPDG---RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEE-SS-SECCEEE-TTS---SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS
T ss_pred CcEEEEEEcCCCCCceEeeeecC-CC-CCceEEEEeCC---CEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC
Confidence 78888887 6665432211111 12 46778898876 66766655 57888887764 543 333331233
Q ss_pred ceEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 181 YLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 181 ~v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
....++++| |++.|.++ ..+|.+.++++............+. .++. + +.+ ......+..++
T Consensus 88 ~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~----------~~g~--g----~~~-~rq~~~h~H~v 149 (345)
T PF10282_consen 88 SPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR----------HEGS--G----PNP-DRQEGPHPHQV 149 (345)
T ss_dssp CEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE----------SEEE--E----SST-TTTSSTCEEEE
T ss_pred CcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecc----------cCCC--C----Ccc-cccccccceeE
Confidence 445689999 88887777 4589999988765321111011110 0000 0 000 00111235567
Q ss_pred EEccCCCceEEEE-cCCeEEEEEcCCCc--e--eEEEecCCCccceEEEEEcCCCCEEEEEec-CCcEEEEecc
Q 000707 260 TFSPHWRHIIFVT-FPRELVVFDLQYET--P--LFSAALPRGCAKFLDVLADPNNDLLYCAHL-DGKLSIWRRK 327 (1341)
Q Consensus 260 afSpdg~~l~~~~-~d~~I~iwDl~t~~--~--l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~-DgtI~lW~~~ 327 (1341)
.|+|||+.++..- ....|.+|++.... . ...+.++.+ .....+++.|||+++|...+ +++|.+++..
T Consensus 150 ~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 150 VFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp EE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC-CCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 9999999887765 34679999998655 3 234455543 45677889999999988775 6789999876
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.46 E-value=0.00031 Score=83.62 Aligned_cols=252 Identities=15% Similarity=0.123 Sum_probs=143.6
Q ss_pred CCCceEeCCCCe--EEEEc----CCeEEEEeCCC--cce--eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCC
Q 000707 26 NFGSADLSPSGL--LAFAS----GSSISILDSRS--LQL--ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLST 95 (1341)
Q Consensus 26 ~~~a~~~s~~gl--lA~gs----~~~V~v~d~~~--~~~--~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~ 95 (1341)
|..-++++|++- .+... .+.|..|+... +++ +........ .-..|+.+|+
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~-----------~p~~i~~~~~--------- 97 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGS-----------SPCHIAVDPD--------- 97 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSS-----------CEEEEEECTT---------
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCC-----------CcEEEEEecC---------
Confidence 455788888883 33322 34777665443 333 333321111 3456777765
Q ss_pred CCCCCCcEEEEEe-CCCcEEEEeCCC-CeEEEE---ecCC-------CCCCCCeeEEEEeecCCCccEEEE-EeCCCeEE
Q 000707 96 EPGSSHLLLAAAD-RHGRVALLDFRL-RSVVLW---IDPD-------PNPKLGIQDLCWIVSKPDSFVLAA-INGPSVLS 162 (1341)
Q Consensus 96 ~~~p~g~~LASg~-~dG~I~vWDv~t-g~~~~~---l~~~-------~h~~~~V~~l~wsp~~~~~~lLas-~s~d~~i~ 162 (1341)
+.+|+++. .+|.|.++++.. |..... +.+. ........++.|+|++ ++|.+ --+...|.
T Consensus 98 -----g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg---~~v~v~dlG~D~v~ 169 (345)
T PF10282_consen 98 -----GRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG---RFVYVPDLGADRVY 169 (345)
T ss_dssp -----SSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS---SEEEEEETTTTEEE
T ss_pred -----CCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC---CEEEEEecCCCEEE
Confidence 56777776 589999999976 543332 2111 1122257889999987 44444 44556899
Q ss_pred EEECCCCe--EE--EEEeCC-CCceEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEE-EecCcchhhhhh
Q 000707 163 LYNTTSAS--CM--WKYDAS-PEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQ-IQTDCTELLKLE 235 (1341)
Q Consensus 163 lWd~~tg~--~i--~~~~~~-~~~v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~-i~~~~~~l~~l~ 235 (1341)
+|+++.+. .. ..+... .....-+.|+| |++++-+. -.++.|.++++..... . .+..+ +.+.
T Consensus 170 ~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g--~-~~~~~~~~~~-------- 237 (345)
T PF10282_consen 170 VYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDG--S-LTEIQTISTL-------- 237 (345)
T ss_dssp EEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT--E-EEEEEEEESC--------
T ss_pred EEEEeCCCceEEEeeccccccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCC--c-eeEEEEeeec--------
Confidence 99987654 21 122221 23456799999 77777554 5578899888763211 0 11111 1000
Q ss_pred hhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEc--CCCce--eEEEecCCCccceEEEEEcCCCC
Q 000707 236 RELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDL--QYETP--LFSAALPRGCAKFLDVLADPNND 310 (1341)
Q Consensus 236 ~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl--~t~~~--l~~~~l~~~~~~~~~v~~~pdg~ 310 (1341)
|...........+++||||+++.... ...+|.+|++ ++|+. +..++. +......+.++|+|+
T Consensus 238 -----------~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 238 -----------PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGR 304 (345)
T ss_dssp -----------ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSS
T ss_pred -----------cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCC
Confidence 00000011355679999999876665 5789999999 34543 333332 223457788899999
Q ss_pred EEEEEe-cCCcEEEEec--cCCc
Q 000707 311 LLYCAH-LDGKLSIWRR--KEGE 330 (1341)
Q Consensus 311 ~L~s~~-~DgtI~lW~~--~~g~ 330 (1341)
+|+.+. .+++|.++++ ++|.
T Consensus 305 ~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEEecCCCeEEEEEEeCCCCc
Confidence 998876 5679999977 4665
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.40 E-value=0.00037 Score=81.82 Aligned_cols=182 Identities=13% Similarity=0.165 Sum_probs=107.9
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
.|+.++|||. |.+|++....| |.+|+...+..+.++.+ . -|..+.|+|.+ .+|.+=+
T Consensus 34 p~~~~~~SP~--------------G~~l~~~~~~~-V~~~~g~~~~~l~~~~~---~--~V~~~~fSP~~---kYL~tw~ 90 (561)
T COG5354 34 PVAYVSESPL--------------GTYLFSEHAAG-VECWGGPSKAKLVRFRH---P--DVKYLDFSPNE---KYLVTWS 90 (561)
T ss_pred chhheeecCc--------------chheehhhccc-eEEccccchhheeeeec---C--CceecccCccc---ceeeeec
Confidence 7889999986 57788877655 88999988877777633 2 59999999987 8888754
Q ss_pred CC---------------CeEEEEECCCCeEEEEEeCCCCc--eE-EEEEcCCCCCEEEEEeCCCeEEEEEecCCccccee
Q 000707 157 GP---------------SVLSLYNTTSASCMWKYDASPEY--LS-CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVV 218 (1341)
Q Consensus 157 ~d---------------~~i~lWd~~tg~~i~~~~~~~~~--v~-~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~ 218 (1341)
.. +.+.+||..+|..+..+.+...+ .. -+.|+- |...+|=. ....+.+.++.+. .
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~-~D~y~ARv-v~~sl~i~e~t~n----~- 163 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSI-DDKYVARV-VGSSLYIHEITDN----I- 163 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeee-cchhhhhh-ccCeEEEEecCCc----c-
Confidence 32 35899999999988777664444 23 466666 33333222 1234555543211 0
Q ss_pred eeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc--eEEE-----EcCCeEEEEEcCCCceeEEE
Q 000707 219 VKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH--IIFV-----TFPRELVVFDLQYETPLFSA 291 (1341)
Q Consensus 219 ~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~--l~~~-----~~d~~I~iwDl~t~~~l~~~ 291 (1341)
.+. ....+ .+..+..++|||-|.+ +++- ..+..++||.+..+..+.+.
T Consensus 164 -~~~-------p~~~l-----------------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk 218 (561)
T COG5354 164 -EEH-------PFKNL-----------------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK 218 (561)
T ss_pred -ccC-------chhhc-----------------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee
Confidence 000 00111 1223666778887533 2222 24567777777766666544
Q ss_pred ecCCCccceEEEEEcCCCCEEEEE
Q 000707 292 ALPRGCAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 292 ~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1341)
.+-. ..-+++.+-+.|++|.+.
T Consensus 219 ~lfk--~~~~qLkW~~~g~~ll~l 240 (561)
T COG5354 219 NLFK--VSGVQLKWQVLGKYLLVL 240 (561)
T ss_pred eeEe--ecccEEEEecCCceEEEE
Confidence 4321 112234445667766544
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.39 E-value=0.034 Score=74.11 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=115.8
Q ss_pred CcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEE----eCCCCe--EEEEecCCCCCCCCeeEEEEeecCCCc
Q 000707 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALL----DFRLRS--VVLWIDPDPNPKLGIQDLCWIVSKPDS 149 (1341)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vW----Dv~tg~--~~~~l~~~~h~~~~V~~l~wsp~~~~~ 149 (1341)
..|.++.|-++. .-|..+..+|.|.+. |..+.. .+..+ + . +|.+++||||+
T Consensus 76 ~~ivs~~yl~d~--------------~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v--d---~-GI~a~~WSPD~--- 132 (928)
T PF04762_consen 76 DKIVSFQYLADS--------------ESLCIALASGDIILVREDPDPDEDEIEIVGSV--D---S-GILAASWSPDE--- 132 (928)
T ss_pred CcEEEEEeccCC--------------CcEEEEECCceEEEEEccCCCCCceeEEEEEE--c---C-cEEEEEECCCc---
Confidence 489999998874 447777788999999 665543 33333 1 3 89999999998
Q ss_pred cEEEEEeCCCeEEE----EECCCCeEEEEEeCCC-CceE-------------------------------EEEEcCCCCC
Q 000707 150 FVLAAINGPSVLSL----YNTTSASCMWKYDASP-EYLS-------------------------------CIRRNPFDAR 193 (1341)
Q Consensus 150 ~lLas~s~d~~i~l----Wd~~tg~~i~~~~~~~-~~v~-------------------------------~~~fsP~d~~ 193 (1341)
++||...++++|.+ ||+-....+..-++.. ..|+ .-..+-.|++
T Consensus 133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~ 212 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGR 212 (928)
T ss_pred CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCc
Confidence 89998888888776 3332211111000000 0000 0001100111
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEc
Q 000707 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTF 273 (1341)
Q Consensus 194 ~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~ 273 (1341)
--.+.-.||..++...-... .+ ..+.++++...|.|+-.. +| .++---.+++-|.|..|++.-.
T Consensus 213 ~~ISWRGDG~yFAVss~~~~-~~-~~R~iRVy~ReG~L~stS----------E~----v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPE-TG-SRRVIRVYSREGELQSTS----------EP----VDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred eEEEECCCCcEEEEEEEEcC-CC-ceeEEEEECCCceEEecc----------cc----CCCccCCccCCCCCCEEEEEEE
Confidence 11222233433332211000 00 123333432222222111 11 0001113589999977777653
Q ss_pred ---CCeEEEEEcCCCceeEEEecC--CCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 274 ---PRELVVFDLQYETPLFSAALP--RGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 274 ---d~~I~iwDl~t~~~l~~~~l~--~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
...|.+|. +.|...+.+.++ .....+..+.+++|+++||..-.|. |.+|-+.-..
T Consensus 277 ~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 277 LPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred cCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 34566666 346666777665 3456778899999999999866554 9999876443
No 268
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.35 E-value=0.00045 Score=81.17 Aligned_cols=247 Identities=12% Similarity=0.085 Sum_probs=141.1
Q ss_pred CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCC--CCCCcE
Q 000707 27 FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEP--GSSHLL 103 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~--~p~g~~ 103 (1341)
+..+.|||.| +|++.....|.+|+-.++-.+..+ -|. .|.-+.|||.+.+....+.+| .|+-..
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~-~~~------------~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF-RHP------------DVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred hhheeecCcchheehhhccceEEccccchhheeee-ecC------------CceecccCcccceeeeeccCCccChhhcc
Confidence 5789999999 677666678999998876654444 354 588899998765433333221 011100
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-EEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC---CC
Q 000707 104 LAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA---SP 179 (1341)
Q Consensus 104 LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~-~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~---~~ 179 (1341)
.=-. .+..+.|||..+|..+..|.....+. -.. -+.|+-++ .++|=.. ...+.+.++ |+..- ..++ ..
T Consensus 102 sp~~-~~n~~~vwd~~sg~iv~sf~~~~q~~-~~Wp~~k~s~~D---~y~ARvv-~~sl~i~e~-t~n~~-~~p~~~lr~ 173 (561)
T COG5354 102 SPFT-SKNNVFVWDIASGMIVFSFNGISQPY-LGWPVLKFSIDD---KYVARVV-GSSLYIHEI-TDNIE-EHPFKNLRP 173 (561)
T ss_pred CCcc-ccCceeEEeccCceeEeeccccCCcc-cccceeeeeecc---hhhhhhc-cCeEEEEec-CCccc-cCchhhccc
Confidence 0001 12369999999999998876543332 133 57888875 4444332 356889997 44321 1111 14
Q ss_pred CceEEEEEcCC-CCCEEEEE-----eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000707 180 EYLSCIRRNPF-DARHFCVL-----GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1341)
Q Consensus 180 ~~v~~~~fsP~-d~~~la~~-----~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1341)
+.+..++++|- +...||.. +..+.+++|.+.-.. -+..+.+ .++
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~l---------fk~------------------- 223 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNL---------FKV------------------- 223 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeee---------Eee-------------------
Confidence 66888999994 33445554 334666666542110 0101111 000
Q ss_pred cceEEEEEccCCCceEEEE-----------cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEe--cCCc
Q 000707 254 LYMVKFTFSPHWRHIIFVT-----------FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH--LDGK 320 (1341)
Q Consensus 254 ~~v~~~afSpdg~~l~~~~-----------~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~--~Dgt 320 (1341)
.-+++-+.+.|+.++... ...++.|+++.... +.+.. .-.+++.++.+.|.++.++..+ .+.+
T Consensus 224 -~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~ 299 (561)
T COG5354 224 -SGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPAS 299 (561)
T ss_pred -cccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceec--cccccceeeeecccCCceeEEecccccc
Confidence 112345555555544432 12568888887333 22221 2246788899999888666554 6777
Q ss_pred EEEEeccC
Q 000707 321 LSIWRRKE 328 (1341)
Q Consensus 321 I~lW~~~~ 328 (1341)
+.+.+.+.
T Consensus 300 ~s~~~lr~ 307 (561)
T COG5354 300 VSVFDLRG 307 (561)
T ss_pred eeeccccc
Confidence 88787763
No 269
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.34 E-value=1.8e-05 Score=86.94 Aligned_cols=147 Identities=16% Similarity=0.211 Sum_probs=100.4
Q ss_pred CeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCC-Cc--eeeec
Q 000707 718 ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTT-GH--SSQFS 791 (1341)
Q Consensus 718 e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~t-g~--~~~l~ 791 (1341)
..+++...+|.+.+-+.+...+.. ...|. .|+-.+....| +.+.+.+|+.||.+..||++. +. -+.-.
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~-vq~wk-----~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~k 207 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEK-VQTWK-----VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSK 207 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeee-ccccc-----ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecce
Confidence 346777788888854443323321 12333 35555555555 667899999999999999983 32 23346
Q ss_pred cCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEE
Q 000707 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG 871 (1341)
Q Consensus 792 gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s 871 (1341)
-|...|.+|.-||..+ .+|++|++|..|++||.+.-. +++..+.. ++-|+.+.|+|. ... .|+.++
T Consensus 208 vH~~GV~SI~ss~~~~-----~~I~TGsYDe~i~~~DtRnm~---kPl~~~~v-~GGVWRi~~~p~----~~~-~lL~~C 273 (339)
T KOG0280|consen 208 VHTSGVVSIYSSPPKP-----TYIATGSYDECIRVLDTRNMG---KPLFKAKV-GGGVWRIKHHPE----IFH-RLLAAC 273 (339)
T ss_pred eeecceEEEecCCCCC-----ceEEEeccccceeeeehhccc---CccccCcc-ccceEEEEecch----hhh-HHHHHH
Confidence 7999999999998754 589999999999999998532 23322222 356999999997 222 234566
Q ss_pred CCCcEEEEEccCC
Q 000707 872 ADSSFRLIEVNTE 884 (1341)
Q Consensus 872 ~DgtIrvWdv~~~ 884 (1341)
.-+-++|-++..+
T Consensus 274 Mh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 274 MHNGAKILDSSDK 286 (339)
T ss_pred HhcCceEEEeccc
Confidence 7777888887764
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.33 E-value=0.00013 Score=83.02 Aligned_cols=233 Identities=18% Similarity=0.165 Sum_probs=136.8
Q ss_pred CCceEeCCC-C-eEEEEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 27 FGSADLSPS-G-LLAFAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 27 ~~a~~~s~~-g-llA~gs--~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
...++.+|+ + .+||+. +.-..+||+++++..+.+....++ ++---..|||| |+
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR---------HFyGHg~fs~d--------------G~ 63 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR---------HFYGHGVFSPD--------------GR 63 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC---------EEecCEEEcCC--------------CC
Confidence 347889995 4 788886 467789999999999888766652 23444667765 56
Q ss_pred EEEEEe-----CCCcEEEEeCC-CCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC------C------------
Q 000707 103 LLAAAD-----RHGRVALLDFR-LRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING------P------------ 158 (1341)
Q Consensus 103 ~LASg~-----~dG~I~vWDv~-tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~------d------------ 158 (1341)
+|.+.- ..|.|-|||+. +-+.+.+|+. |.- .-..|.|.||+ +.|+++.+ |
T Consensus 64 ~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s--~GI-GPHel~l~pDG---~tLvVANGGI~Thpd~GR~kLNl~tM~ 137 (305)
T PF07433_consen 64 LLYTTENDYETGRGVIGVYDAARGYRRIGEFPS--HGI-GPHELLLMPDG---ETLVVANGGIETHPDSGRAKLNLDTMQ 137 (305)
T ss_pred EEEEeccccCCCcEEEEEEECcCCcEEEeEecC--CCc-ChhhEEEcCCC---CEEEEEcCCCccCcccCceecChhhcC
Confidence 676653 35899999998 4466677643 322 45778899987 55655521 1
Q ss_pred CeEEEEECCCCeEEEEEeC----CCCceEEEEEcCCCCCEEEEEeCCCeEEE-EEecCCcccceeeeeEEEecCcch-hh
Q 000707 159 SVLSLYNTTSASCMWKYDA----SPEYLSCIRRNPFDARHFCVLGLKGLLLS-VRVLGQKEDEVVVKELQIQTDCTE-LL 232 (1341)
Q Consensus 159 ~~i~lWd~~tg~~i~~~~~----~~~~v~~~~fsP~d~~~la~~~~dG~i~~-~d~~~~~~~~~~~k~~~i~~~~~~-l~ 232 (1341)
..|..-|..+|+.+-+... +.-.|.-+++++ +|.|.+ ....+...... -...+ ...+. +.
T Consensus 138 psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-----------~G~V~~a~Q~qg~~~~~~--PLva~-~~~g~~~~ 203 (305)
T PF07433_consen 138 PSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-----------DGTVAFAMQYQGDPGDAP--PLVAL-HRRGGALR 203 (305)
T ss_pred CceEEEecCCCceeeeeecCccccccceeeEEecC-----------CCcEEEEEecCCCCCccC--CeEEE-EcCCCcce
Confidence 2455556667776654332 222344444444 244433 12222110000 00000 00000 10
Q ss_pred hhhhhhccccCCCCCC--CCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCC
Q 000707 233 KLERELSAGAASLSPA--SGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNN 309 (1341)
Q Consensus 233 ~l~~~~~~~s~~~~p~--~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg 309 (1341)
.+. .|. ......|+-+++|+++++.++..+ .-+.+.+||.++++.+....+.. ...++..+++
T Consensus 204 ~~~----------~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D----~cGva~~~~~ 269 (305)
T PF07433_consen 204 LLP----------APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD----ACGVAPTDDG 269 (305)
T ss_pred ecc----------CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc----eeeeeecCCc
Confidence 000 110 123456899999999998776666 45789999999999998877653 3455555555
Q ss_pred CEEEEEec
Q 000707 310 DLLYCAHL 317 (1341)
Q Consensus 310 ~~L~s~~~ 317 (1341)
++++.+.
T Consensus 270 -f~~ssG~ 276 (305)
T PF07433_consen 270 -FLVSSGQ 276 (305)
T ss_pred -eEEeCCC
Confidence 5555443
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=0.00019 Score=96.57 Aligned_cols=255 Identities=9% Similarity=0.048 Sum_probs=139.8
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEee--cC------------CCeEEEEEcCCCcEEEEecCCcccccCcccCeEE
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSV--HN------------GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLV 593 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~--H~------------~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~ 593 (1341)
++.+.++-+.++.|++||.. |..+..+.+ .. ..-.+|++.+++..+-++. ...+.|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD--------t~n~~Ir 649 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD--------TENHALR 649 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe--------CCCceEE
Confidence 46688888889999999985 554444432 11 1246788887654322221 1235789
Q ss_pred EEEccCCceeeeEEe-------ccCC------CCCeEEEEECC-CCCEEEEEECCCcEEEEeccCCCceeeeccCceEEE
Q 000707 594 VTCLRSGINRAFRVL-------QKPE------RAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVL 659 (1341)
Q Consensus 594 lwD~~tG~~~~l~~l-------~~~~------~~~I~~i~~Sp-dG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l 659 (1341)
++|+.++..+.+... .+.. -.....|+|+| +|..+++.+.++.|++||. .++... .+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~-~~g~v~-~~~------ 721 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNI-SDGVTR-VFS------ 721 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEEC-CCCeEE-EEe------
Confidence 999887764333210 0000 01236899999 5666677778899999998 455332 211
Q ss_pred EEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCC-eEEEEecCCcEEEEEecCCe
Q 000707 660 EWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSE-SFAFALANGALGVFEVHGRR 738 (1341)
Q Consensus 660 ~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e-~la~~~~Dg~I~vwdv~~~~ 738 (1341)
.++..... ++..... . .+..-.....+++++ .+++-..+++|++||+++..
T Consensus 722 ---G~G~~~~~--------------------~g~~~~~-~----~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 722 ---GDGYERNL--------------------NGSSGTS-T----SFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred ---cCCccccC--------------------CCCcccc-c----cccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 11000000 0000000 0 000000001123345 34444567899999986433
Q ss_pred eeccc---CCCCCC--cccc--------ccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccC----------
Q 000707 739 IRDFR---PKWPSS--SFIS--------SDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTH---------- 793 (1341)
Q Consensus 739 v~~~~---~~~~~~--~l~~--------~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~gH---------- 793 (1341)
..... +..+.. .+-. ....-..+++ +|+..++-..+++|++||..++.+.++.+.
T Consensus 774 ~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 774 SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcc
Confidence 21000 000000 0000 0011235555 788888888999999999998876554332
Q ss_pred ----CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 794 ----REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 794 ----~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
-.....|+++|+ | ..+++-+.+++|++||+.+++
T Consensus 854 ~~a~l~~P~GIavd~d--G----~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGEN--G----RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCC--C----CEEEEECCCCEEEEEECCCCc
Confidence 125778999998 4 445556789999999998876
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.30 E-value=0.0001 Score=85.16 Aligned_cols=227 Identities=14% Similarity=0.171 Sum_probs=150.3
Q ss_pred CCCC-eEEEEcCCeEEEEeCCCcceeEe-ecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCC
Q 000707 33 SPSG-LLAFASGSSISILDSRSLQLIST-IPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRH 110 (1341)
Q Consensus 33 s~~g-llA~gs~~~V~v~d~~~~~~~~~-l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~d 110 (1341)
+.|| .|+|-.++.|.++||.+-.+-.. +..+..++ .-.+-.|.-++|..+-.. -+|.++|..++
T Consensus 275 nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk----~k~~k~~~pskyledfa~---------~~Gd~ia~VSR- 340 (668)
T COG4946 275 NSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRK----KKQPKFVNPSKYLEDFAV---------VNGDYIALVSR- 340 (668)
T ss_pred CCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccc----cccccccCHHHhhhhhcc---------CCCcEEEEEec-
Confidence 5578 89999999999999987544211 11111100 000113444455443211 36888888875
Q ss_pred CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCC-eEEEEECCCCeEEEEEeCCCCceEEEEEcC
Q 000707 111 GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPS-VLSLYNTTSASCMWKYDASPEYLSCIRRNP 189 (1341)
Q Consensus 111 G~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~-~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP 189 (1341)
|++.|-+...|-.++. ++.+ +|....+.-+. .-++.+..|+ .|.++|..+|+.. ++...-+.|.++..+|
T Consensus 341 GkaFi~~~~~~~~iqv----~~~~-~VrY~r~~~~~---e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~ 411 (668)
T COG4946 341 GKAFIMRPWDGYSIQV----GKKG-GVRYRRIQVDP---EGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSP 411 (668)
T ss_pred CcEEEECCCCCeeEEc----CCCC-ceEEEEEccCC---cceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcC
Confidence 6777888777766553 4455 78888887665 4566677777 8999999988743 3444467899999999
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceE
Q 000707 190 FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHII 269 (1341)
Q Consensus 190 ~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~ 269 (1341)
|+..++++.+...+.++|+..... +... + ....-++.+++||++|+++
T Consensus 412 -dGK~~vvaNdr~el~vididngnv-----~~id------------k--------------S~~~lItdf~~~~nsr~iA 459 (668)
T COG4946 412 -DGKKVVVANDRFELWVIDIDNGNV-----RLID------------K--------------SEYGLITDFDWHPNSRWIA 459 (668)
T ss_pred -CCcEEEEEcCceEEEEEEecCCCe-----eEec------------c--------------cccceeEEEEEcCCceeEE
Confidence 999999999888998888755321 1110 0 0122477889999999999
Q ss_pred EEEc----CCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEec
Q 000707 270 FVTF----PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHL 317 (1341)
Q Consensus 270 ~~~~----d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~ 317 (1341)
++-- -+.|+|+|.+.++...+.. + .+.-.+=+|.|||++||-.+.
T Consensus 460 YafP~gy~tq~Iklydm~~~Kiy~vTT-~--ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 460 YAFPEGYYTQSIKLYDMDGGKIYDVTT-P--TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EecCcceeeeeEEEEecCCCeEEEecC-C--cccccCcccCCCCcEEEEEec
Confidence 9864 4689999999887654332 2 122223456799999997753
No 273
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.30 E-value=4.5e-06 Score=95.26 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=66.3
Q ss_pred ccccceEEEEee--cCCEEEEEeCCCcEEEEECCC-Cceeee-ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEE
Q 000707 752 ISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT-GHSSQF-STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827 (1341)
Q Consensus 752 ~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~t-g~~~~l-~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IW 827 (1341)
.||...++.|++ |+++|+++++|..||+=.... -.+.+| .||+..|..++.-++ ..|+++|.|+++++|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-------~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-------YLLLSGSGDKTLRLW 220 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-------ceeeecCCCCcEEEE
Confidence 488889999999 999999999999999865543 335565 789999999999888 679999999999999
Q ss_pred ECCCCCcc
Q 000707 828 DLDSQDPL 835 (1341)
Q Consensus 828 Dl~~~~~l 835 (1341)
|+.+++++
T Consensus 221 d~~sgk~L 228 (390)
T KOG3914|consen 221 DITSGKLL 228 (390)
T ss_pred ecccCCcc
Confidence 99999854
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=0.0009 Score=79.19 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEc
Q 000707 183 SCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFS 262 (1341)
Q Consensus 183 ~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afS 262 (1341)
+-+.||| .|..|++.-..|... | | +.. ..++.+- .|| .+--+.||
T Consensus 214 tyv~wSP-~GTYL~t~Hk~GI~l-W---G-------G~~---------f~r~~RF-------------~Hp-~Vq~idfS 258 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQGIAL-W---G-------GES---------FDRIQRF-------------YHP-GVQFIDFS 258 (698)
T ss_pred eeEEecC-CceEEEEEeccceee-e---c-------Ccc---------HHHHHhc-------------cCC-CceeeecC
Confidence 4689999 889998887666654 3 1 111 1223221 012 24445899
Q ss_pred cCCCceEEEEc-----------CCeEEEEEcCCCceeEEEecCCCccceEEEE-EcCCCCEEEEEecCCcEEEEecc
Q 000707 263 PHWRHIIFVTF-----------PRELVVFDLQYETPLFSAALPRGCAKFLDVL-ADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 263 pdg~~l~~~~~-----------d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~-~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
|.-+.|++-+. ...++|||+.+|...+.++..++....+.+. +|.|++++|+...| +|.|.+..
T Consensus 259 P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtp 334 (698)
T KOG2314|consen 259 PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETP 334 (698)
T ss_pred CccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecC
Confidence 99999988874 2579999999999988887765555555443 47899999998874 57777654
No 275
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.23 E-value=1.7e-05 Score=87.20 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred ceEeCCCC-eEE-EEcCCeEEEEeCCCc--ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 29 SADLSPSG-LLA-FASGSSISILDSRSL--QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 29 a~~~s~~g-llA-~gs~~~V~v~d~~~~--~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
++||++.| -++ .-+.+.+.+.+-..+ +.+|+++.|.- .....+|+... ..++
T Consensus 126 slD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----------E~Wta~f~~~~-------------pnlv 181 (339)
T KOG0280|consen 126 SLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----------EAWTAKFSDKE-------------PNLV 181 (339)
T ss_pred EEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce-----------eeeeeecccCC-------------CceE
Confidence 68999887 333 335567776665544 44668999997 88889998653 3789
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC-CCeEEEEEeCCCCceE
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMWKYDASPEYLS 183 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~~~~~~~~~v~ 183 (1341)
.+|+.||.+.-||++......+-..+-|+. +|.++.-+|.. +.++++|+.|-.|++||++ -|+++..-.- .+.|.
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~-GV~SI~ss~~~--~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVW 257 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTS-GVVSIYSSPPK--PTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVW 257 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeec-ceEEEecCCCC--CceEEEeccccceeeeehhcccCccccCcc-ccceE
Confidence 999999999999998443222322456777 89999888864 4899999999999999998 5667654333 46788
Q ss_pred EEEEcCCCCCEEEEEe-CCCeE
Q 000707 184 CIRRNPFDARHFCVLG-LKGLL 204 (1341)
Q Consensus 184 ~~~fsP~d~~~la~~~-~dG~i 204 (1341)
-+...|++..++.+++ ..|.-
T Consensus 258 Ri~~~p~~~~~lL~~CMh~G~k 279 (339)
T KOG0280|consen 258 RIKHHPEIFHRLLAACMHNGAK 279 (339)
T ss_pred EEEecchhhhHHHHHHHhcCce
Confidence 8999998765554443 34543
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=0.00057 Score=80.77 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=96.7
Q ss_pred cccccccCCCCCC---CC--CCceEeCCCC-eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEcc
Q 000707 12 WDCNFMLPGPPSR---NN--FGSADLSPSG-LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIP 85 (1341)
Q Consensus 12 ~~~~~~lpg~~~~---~~--~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp 85 (1341)
|.. ++++|..- .| -+-+.|||.| .|++=....|.+|--.+.+.++-+ -|+ .|.-+.|||
T Consensus 195 wN~--~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF-~Hp------------~Vq~idfSP 259 (698)
T KOG2314|consen 195 WNS--KFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF-YHP------------GVQFIDFSP 259 (698)
T ss_pred ccc--cCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc-cCC------------CceeeecCC
Confidence 666 66665322 12 2459999999 677666678999988887777666 466 488888888
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCC-CcEEEEeCCCCeEEEEecCCCCCCCCe-eEEEEeecCCCccEEEEEeCCCeEEE
Q 000707 86 ITLRCDLLSTEPGSSHLLLAAADRH-GRVALLDFRLRSVVLWIDPDPNPKLGI-QDLCWIVSKPDSFVLAAINGPSVLSL 163 (1341)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~d-G~I~vWDv~tg~~~~~l~~~~h~~~~V-~~l~wsp~~~~~~lLas~s~d~~i~l 163 (1341)
.-.+.-.+|..|. + +-=++.+ ..++|||+++|...+.|....... .+ .-..||.|+ .++|--.. +.|.|
T Consensus 260 ~EkYLVT~s~~p~--~--~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~-~~WP~frWS~Dd---Ky~Arm~~-~sisI 330 (698)
T KOG2314|consen 260 NEKYLVTYSPEPI--I--VEEDDNEGQQLIIWDIATGLLKRSFPVIKSPY-LKWPIFRWSHDD---KYFARMTG-NSISI 330 (698)
T ss_pred ccceEEEecCCcc--c--cCcccCCCceEEEEEccccchhcceeccCCCc-cccceEEeccCC---ceeEEecc-ceEEE
Confidence 6544222221110 0 0001222 579999999999998886532222 33 334688876 78887665 57889
Q ss_pred EECCCCeEEEEEeCCCCceEEEEEcC
Q 000707 164 YNTTSASCMWKYDASPEYLSCIRRNP 189 (1341)
Q Consensus 164 Wd~~tg~~i~~~~~~~~~v~~~~fsP 189 (1341)
+++.+=..+-......+.|..+.|+|
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP 356 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSP 356 (698)
T ss_pred EecCceeeecccccCCccccCcccCC
Confidence 98764333322333345677888888
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.17 E-value=0.00096 Score=89.97 Aligned_cols=265 Identities=14% Similarity=0.096 Sum_probs=150.6
Q ss_pred CceEeCCC-C-eEEEEc-CCeEEEEeCCCcceeEeecC-CCCCCCCCCC-----CCCCcEEEEEEccCCCccccCCCCCC
Q 000707 28 GSADLSPS-G-LLAFAS-GSSISILDSRSLQLISTIPI-PPPTSAGSVA-----SLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 28 ~a~~~s~~-g-llA~gs-~~~V~v~d~~~~~~~~~l~~-H~~~~~~~~~-----~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
+.++++++ | +++.-+ ++.|+++|.. ++.+..+.+ ... |+.+ ..-..-..|++.++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~---G~~dG~~~~a~f~~P~GIavd~~------------ 634 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEE---GLRDGSFEDATFNRPQGLAYNAK------------ 634 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCc---CCCCCchhccccCCCcEEEEeCC------------
Confidence 35777764 5 444443 4689999975 555444433 110 1100 00011245666654
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCC---------------CCCCeeEEEEeecCCCccEEEEEeCCCeEE
Q 000707 99 SSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPN---------------PKLGIQDLCWIVSKPDSFVLAAINGPSVLS 162 (1341)
Q Consensus 99 p~g~~LASg~~-dG~I~vWDv~tg~~~~~l~~~~h---------------~~~~V~~l~wsp~~~~~~lLas~s~d~~i~ 162 (1341)
+..|..++. .+.|+++|..++... .+...+. -. .-.+++|+|++ +.+.++.+.++.|.
T Consensus 635 --gn~LYVaDt~n~~Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln-~P~gVa~dp~~--g~LyVad~~~~~I~ 708 (1057)
T PLN02919 635 --KNLLYVADTENHALREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLN-SPWDVCFEPVN--EKVYIAMAGQHQIW 708 (1057)
T ss_pred --CCEEEEEeCCCceEEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcC-CCeEEEEecCC--CeEEEEECCCCeEE
Confidence 455666654 578999998877543 2211110 01 23578999854 26778888899999
Q ss_pred EEECCCCeEEEEEeCC---------------CCceEEEEEcCCCCCEE-EEEeCCCeEEEEEecCCcccceeeeeEEEec
Q 000707 163 LYNTTSASCMWKYDAS---------------PEYLSCIRRNPFDARHF-CVLGLKGLLLSVRVLGQKEDEVVVKELQIQT 226 (1341)
Q Consensus 163 lWd~~tg~~i~~~~~~---------------~~~v~~~~fsP~d~~~l-a~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~ 226 (1341)
+||..+|... .+.+. -.....++|+| |+.+| ++-+.++.|++||..+... .+....
T Consensus 709 v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~------~~~~gg 780 (1057)
T PLN02919 709 EYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGS------RLLAGG 780 (1057)
T ss_pred EEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcE------EEEEec
Confidence 9999877542 22110 01235689999 77644 4556678999998754211 000000
Q ss_pred Cc---chhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCC-------
Q 000707 227 DC---TELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRG------- 296 (1341)
Q Consensus 227 ~~---~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~------- 296 (1341)
+. ..+.+... ..+. ...+...+| ..++|+|+|...++-..++.|++||.+++....... .+.
T Consensus 781 ~~~~~~~l~~fG~-~dG~---g~~~~l~~P---~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~ 852 (1057)
T PLN02919 781 DPTFSDNLFKFGD-HDGV---GSEVLLQHP---LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGK 852 (1057)
T ss_pred ccccCcccccccC-CCCc---hhhhhccCC---ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCc
Confidence 00 00000000 0000 000011122 356899999866666789999999999886543221 110
Q ss_pred -----ccceEEEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 297 -----CAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 297 -----~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
......++.+++|+++++-..|++|++||..+++
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0124567888999988888899999999998775
No 278
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=0.00066 Score=82.74 Aligned_cols=189 Identities=6% Similarity=-0.067 Sum_probs=112.3
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCc-EEEEEeC---CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEE
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHL-LLAAADR---HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVL 152 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~-~LASg~~---dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lL 152 (1341)
.+..-+||||+ . .++-.+. +..|.++|+.+|+....... .+ .+....|+||+. +++
T Consensus 189 ~~~~p~wSpDG--------------~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g-~~~~~~~SPDG~--~la 248 (419)
T PRK04043 189 LNIFPKWANKE--------------QTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QG-MLVVSDVSKDGS--KLL 248 (419)
T ss_pred CeEeEEECCCC--------------CcEEEEEEccCCCCEEEEEECCCCcEEEEecC---CC-cEEeeEECCCCC--EEE
Confidence 46678999875 3 3443332 35688899998876554322 23 456678999872 455
Q ss_pred EEEeC--CCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCC-C--eEEEEEecCCcccceeeeeEEEecC
Q 000707 153 AAING--PSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLK-G--LLLSVRVLGQKEDEVVVKELQIQTD 227 (1341)
Q Consensus 153 as~s~--d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~d-G--~i~~~d~~~~~~~~~~~k~~~i~~~ 227 (1341)
.+.+. +..|.++|+.+|+. ..++.+........|+| |+++|+..+.. | .|+..|+.+..
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~-------------- 312 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGS-------------- 312 (419)
T ss_pred EEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCC--------------
Confidence 55543 35777889887763 33433233233457999 99999888753 2 45555543311
Q ss_pred cchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcC---------CeEEEEEcCCCceeEEEecCCCcc
Q 000707 228 CTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFP---------RELVVFDLQYETPLFSAALPRGCA 298 (1341)
Q Consensus 228 ~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d---------~~I~iwDl~t~~~l~~~~l~~~~~ 298 (1341)
..++.. ... . ...|||||+.+++.... ..|.+.|++++... .+. .+.
T Consensus 313 ---~~rlt~-------------~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT--~~~- 368 (419)
T PRK04043 313 ---VEQVVF-------------HGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLT--ANG- 368 (419)
T ss_pred ---eEeCcc-------------CCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECC--CCC-
Confidence 001100 000 1 12799999999999854 37899999988653 232 221
Q ss_pred ceEEEEEcCCCCEEEEEec-CCcEEEEe
Q 000707 299 KFLDVLADPNNDLLYCAHL-DGKLSIWR 325 (1341)
Q Consensus 299 ~~~~v~~~pdg~~L~s~~~-DgtI~lW~ 325 (1341)
......++|||+.|+-... .+.-.|+-
T Consensus 369 ~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 369 VNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred CcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2224567899997765543 33433443
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.10 E-value=0.0022 Score=71.58 Aligned_cols=187 Identities=17% Similarity=0.187 Sum_probs=110.5
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEc
Q 000707 109 RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRN 188 (1341)
Q Consensus 109 ~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fs 188 (1341)
.+|+|..||.++|+.+-...+..... ..... ..+++ ..+.+++.++.|..||..+|+.+|++.. .+.+... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~-~~~~~-~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~-~- 72 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIG-GPVAT-AVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGA-P- 72 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCS-SEEET-EEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSG-E-
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCC-Cccce-EEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccce-e-
Confidence 37899999999999887765522112 12211 22233 4566668899999999999999999887 3322111 1
Q ss_pred CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCce
Q 000707 189 PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHI 268 (1341)
Q Consensus 189 P~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l 268 (1341)
..++.++.++..++.++.+|..... ..|.+.... .+... ......+..++..+
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~------~~W~~~~~~-----------------~~~~~----~~~~~~~~~~~~~~ 125 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGK------VLWSIYLTS-----------------SPPAG----VRSSSSPAVDGDRL 125 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSC------EEEEEEE-S-----------------SCTCS----TB--SEEEEETTEE
T ss_pred eecccccccccceeeeEecccCCcc------eeeeecccc-----------------ccccc----cccccCceEecCEE
Confidence 1145677777778888888843311 112110000 00000 01111223336677
Q ss_pred EEEEcCCeEEEEEcCCCceeEEEecCCCc--cce-------EEEEEcCCCCEEEEEecCCc-EEEEeccCCceee
Q 000707 269 IFVTFPRELVVFDLQYETPLFSAALPRGC--AKF-------LDVLADPNNDLLYCAHLDGK-LSIWRRKEGEQVH 333 (1341)
Q Consensus 269 ~~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~~~-------~~v~~~pdg~~L~s~~~Dgt-I~lW~~~~g~~~~ 333 (1341)
+++..++.|..+|+++|+.+......... ..+ ..+. -+++.++.++.+|. +.+ |.++|+.++
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~g~~~~~-d~~tg~~~w 197 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV--ISDGRVYVSSGDGRVVAV-DLATGEKLW 197 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE--CCTTEEEEECCTSSEEEE-ETTTTEEEE
T ss_pred EEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE--EECCEEEEEcCCCeEEEE-ECCCCCEEE
Confidence 77777999999999999999888774322 111 1222 22338888888886 555 999887554
No 280
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.10 E-value=0.0029 Score=76.89 Aligned_cols=200 Identities=15% Similarity=0.137 Sum_probs=113.4
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-----EEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-----DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY 175 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~-----~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1341)
+.+|..++.+|.+.-.|..+|+.+-..++.+..+ .+. .+.-.|--.+ ..+..++.++.+..+|..+|+.+|++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~v~~-~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDG-WFSKNKSALLSGGVTVAG-GKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccc-ccccccccccccccEEEC-CEEEEEcCCCEEEEEECCCCCCcccc
Confidence 4577778888999999999998775544432110 000 0000111011 34556777899999999999999998
Q ss_pred eCCCCceEEEEEcCC-CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000707 176 DASPEYLSCIRRNPF-DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1341)
Q Consensus 176 ~~~~~~v~~~~fsP~-d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1341)
... ..+.+ +|. .+.++.++..+|.++.+|..... ..|....+.+.+ .+.. ...|
T Consensus 147 ~~~-~~~~s---sP~v~~~~v~v~~~~g~l~ald~~tG~------~~W~~~~~~~~~-~~~~-------------~~sP- 201 (394)
T PRK11138 147 KVA-GEALS---RPVVSDGLVLVHTSNGMLQALNESDGA------VKWTVNLDVPSL-TLRG-------------ESAP- 201 (394)
T ss_pred cCC-Cceec---CCEEECCEEEEECCCCEEEEEEccCCC------EeeeecCCCCcc-cccC-------------CCCC-
Confidence 763 22221 121 23456667778888888864311 112111000000 0000 0011
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCc--c---ceEEEEEcC--CCCEEEEEecCCcEEEEecc
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC--A---KFLDVLADP--NNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~--~---~~~~v~~~p--dg~~L~s~~~DgtI~lW~~~ 327 (1341)
+ .. +..++.+..++.+..+|.++|+.+......... . .+..+..+| .++.||.++.||.+...|.+
T Consensus 202 -~----v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 202 -A----TA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred -E----EE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 1 11 234666777899999999999887665432110 0 011122223 46678888899999999999
Q ss_pred CCceeee
Q 000707 328 EGEQVHV 334 (1341)
Q Consensus 328 ~g~~~~~ 334 (1341)
+|+.++.
T Consensus 275 tG~~~W~ 281 (394)
T PRK11138 275 SGQIVWK 281 (394)
T ss_pred CCCEEEe
Confidence 9986554
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.08 E-value=7.7e-05 Score=83.57 Aligned_cols=244 Identities=16% Similarity=0.221 Sum_probs=148.0
Q ss_pred EEEEEeecCCCeEEEEEcC-CCcEEEEecCCcccccCcccCeEEEEEccC-CceeeeEEeccCCCCCeEEEEECCCCCEE
Q 000707 551 VTASFSVHNGTVRGLRWLG-NSRLVSFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSGRYL 628 (1341)
Q Consensus 551 ~~~~l~~H~~~V~~l~fs~-d~~llS~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~~~~~~~I~~i~~SpdG~~L 628 (1341)
+++.+.||...|++....| +..+++++.| .+++||--++ |+ .-+.+.-.-..+++++.++++-+.|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~d----------rtvrv~lkrds~q--~wpsI~~~mP~~~~~~~y~~e~~~L 83 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSED----------RTVRVWLKRDSGQ--YWPSIYHYMPSPCSAMEYVSESRRL 83 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEcccc----------ceeeeEEeccccc--cCchhhhhCCCCceEeeeeccceEE
Confidence 3456678888887755544 4456766554 3889986543 44 2222222235688999999999999
Q ss_pred EEEECCCcEEEEeccCC---Cceeeecc---CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCC
Q 000707 629 LILFRDAPVEVWAMTKN---PIMLRSLA---LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSS 702 (1341)
Q Consensus 629 as~s~D~~I~vWDl~~t---~~~l~~l~---~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~ 702 (1341)
++|...+++.=+.+... ...+|... ..+.++-|+.
T Consensus 84 ~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~--------------------------------------- 124 (404)
T KOG1409|consen 84 YVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL--------------------------------------- 124 (404)
T ss_pred EEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecC---------------------------------------
Confidence 99999998877766211 11122111 1233333431
Q ss_pred CCcCCCCCCccCCCCCeEEEEecCCcEEEEEe--cCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEE
Q 000707 703 DSKDASSEGSQDDTSESFAFALANGALGVFEV--HGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWW 780 (1341)
Q Consensus 703 ~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv--~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lW 780 (1341)
..+.+++.+.|..+ .|.. .++++..+... ...+++.+|-.+...|+..|.|..-
T Consensus 125 -------------~~e~V~s~~~dk~~-~~hc~e~~~~lg~Y~~~----------~~~t~~~~d~~~~fvGd~~gqvt~l 180 (404)
T KOG1409|consen 125 -------------THEWVLSTGKDKQF-AWHCTESGNRLGGYNFE----------TPASALQFDALYAFVGDHSGQITML 180 (404)
T ss_pred -------------CceeEEEeccccce-EEEeeccCCcccceEee----------ccCCCCceeeEEEEecccccceEEE
Confidence 12455555555444 3443 23333211000 0001111221234445555655544
Q ss_pred ECC---CCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCC
Q 000707 781 DVT---TGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPT 857 (1341)
Q Consensus 781 Dl~---tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~ 857 (1341)
.+. -+.+.++.+|.+.|.+++|.|. . ++|.++..|..|.+||+-...-....+ ++|. ..|..+...+.
T Consensus 181 r~~~~~~~~i~~~~~h~~~~~~l~Wd~~--~----~~LfSg~~d~~vi~wdigg~~g~~~el-~gh~--~kV~~l~~~~~ 251 (404)
T KOG1409|consen 181 KLEQNGCQLITTFNGHTGEVTCLKWDPG--Q----RLLFSGASDHSVIMWDIGGRKGTAYEL-QGHN--DKVQALSYAQH 251 (404)
T ss_pred EEeecCCceEEEEcCcccceEEEEEcCC--C----cEEEeccccCceEEEeccCCcceeeee-ccch--hhhhhhhhhhh
Confidence 332 2346788999999999999998 3 678999999999999997665444444 7776 56777766654
Q ss_pred CCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 858 RTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 858 ~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
...|.+++.||.|-+|+++..
T Consensus 252 ------t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 252 ------TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ------heeeeeccCCCeEEEEeccce
Confidence 236789999999999999864
No 282
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.06 E-value=0.0015 Score=72.98 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=132.8
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe
Q 000707 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS 122 (1341)
Q Consensus 43 ~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~ 122 (1341)
.+.|..+|+++|+.+-...--++. ....+... +++.+|.+++.++.+..||..+|+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~---------~~~~~~~~---------------~~~~~v~~~~~~~~l~~~d~~tG~ 57 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGI---------GGPVATAV---------------PDGGRVYVASGDGNLYALDAKTGK 57 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSC---------SSEEETEE---------------EETTEEEEEETTSEEEEEETTTSE
T ss_pred CCEEEEEECCCCCEEEEEECCCCC---------CCccceEE---------------EeCCEEEEEcCCCEEEEEECCCCC
Confidence 367889999999987665431100 01111111 124567777899999999999999
Q ss_pred EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE-eCCCC---ceEEEEEcCCCCCEEEEE
Q 000707 123 VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY-DASPE---YLSCIRRNPFDARHFCVL 198 (1341)
Q Consensus 123 ~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~-~~~~~---~v~~~~fsP~d~~~la~~ 198 (1341)
.+-.+...+... ... ...+ ..+..+..++.|..+|+.+|+.+|+. ....+ ......... ++..+.++
T Consensus 58 ~~W~~~~~~~~~----~~~-~~~~---~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 128 (238)
T PF13360_consen 58 VLWRFDLPGPIS----GAP-VVDG---GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVG 128 (238)
T ss_dssp EEEEEECSSCGG----SGE-EEET---TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEE
T ss_pred EEEEeecccccc----cee-eecc---cccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEE
Confidence 887776533211 111 1222 34555667889999999999999994 43211 111222222 46778888
Q ss_pred eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEE
Q 000707 199 GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELV 278 (1341)
Q Consensus 199 ~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~ 278 (1341)
..+|.++.+|..... ...++.+. .......+. ........+.+. ++ .+.....++.+.
T Consensus 129 ~~~g~l~~~d~~tG~----~~w~~~~~-~~~~~~~~~---------------~~~~~~~~~~~~-~~-~v~~~~~~g~~~ 186 (238)
T PF13360_consen 129 TSSGKLVALDPKTGK----LLWKYPVG-EPRGSSPIS---------------SFSDINGSPVIS-DG-RVYVSSGDGRVV 186 (238)
T ss_dssp ETCSEEEEEETTTTE----EEEEEESS-TT-SS--EE---------------EETTEEEEEECC-TT-EEEEECCTSSEE
T ss_pred eccCcEEEEecCCCc----EEEEeecC-CCCCCccee---------------eecccccceEEE-CC-EEEEEcCCCeEE
Confidence 878999998864321 11112110 000000000 000001122333 34 566666677544
Q ss_pred EEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeee
Q 000707 279 VFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1341)
Q Consensus 279 iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1341)
-+|+++++.+.... .. .... .+..+++.|++++.|+.|..||+++|+.++.
T Consensus 187 ~~d~~tg~~~w~~~-~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 187 AVDLATGEKLWSKP-IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred EEECCCCCEEEEec-CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence 44999999765433 21 1111 1346788999999999999999999986653
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.06 E-value=6.1e-05 Score=90.89 Aligned_cols=208 Identities=14% Similarity=0.173 Sum_probs=130.7
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCC-cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcE
Q 000707 26 NFGSADLSPSG-LLAFASGSSISILDSRS-LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~~-~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1341)
.++++..+|.| =+|.++.....|.|... +..-.-| .|.. ...|--++|+|... ....
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l-~h~t---------pw~vad~qws~h~a-----------~~~w 84 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWL-HHIT---------PWQVADVQWSPHPA-----------KPYW 84 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEEeccCCCCCceee-eccC---------cchhcceecccCCC-----------Ccee
Confidence 36789999988 57777776666776543 2222222 2332 23788899999753 2455
Q ss_pred EEEEeCCCcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe-EEEEEeCCCCc
Q 000707 104 LAAADRHGRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS-CMWKYDASPEY 181 (1341)
Q Consensus 104 LASg~~dG~I~vWDv~tg-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~-~i~~~~~~~~~ 181 (1341)
++|-+. .+.+||++... .....|.+.||+. .|+++-|.|..+ ++||+++-|..+..||+++.. ++.....-...
T Consensus 85 iVsts~-qkaiiwnlA~ss~~aIef~lhghsr-aitd~n~~~q~p--dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 85 IVSTSN-QKAIIWNLAKSSSNAIEFVLHGHSR-AITDINFNPQHP--DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred EEecCc-chhhhhhhhcCCccceEEEEecCcc-ceeccccCCCCC--cceeeccccccceeeeccCCCcceeeeeccccc
Confidence 666654 45569998543 2233455689988 999999999774 799999999999999998764 33322221334
Q ss_pred eEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEE
Q 000707 182 LSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTF 261 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~af 261 (1341)
-+.|.|+--|+..+|. ++...+++||.+-.... +..++++.+. +..+.|
T Consensus 161 asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~p---------------l~s~K~~vs~---------------vn~~~f 209 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTP---------------LCSLKGHVSS---------------VNSIDF 209 (1081)
T ss_pred CceeeecccCcchhhh-ccCCceEEEeccCCCcc---------------eEEeccccee---------------eehHHH
Confidence 4567787656665554 55678999997543211 1112222111 222233
Q ss_pred ccC-CCceEEEEcCCeEEEEEcCCCceeE
Q 000707 262 SPH-WRHIIFVTFPRELVVFDLQYETPLF 289 (1341)
Q Consensus 262 Spd-g~~l~~~~~d~~I~iwDl~t~~~l~ 289 (1341)
..- ...+++.+.|++|..||-+..+...
T Consensus 210 nr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 210 NRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred hhhhhhhhcccCCCCceeeeccccccccc
Confidence 221 1246677889999999998765543
No 284
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=98.02 E-value=2.5e-05 Score=90.05 Aligned_cols=127 Identities=24% Similarity=0.303 Sum_probs=89.6
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCC------cchhhHHHhcC
Q 000707 1118 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRS------LSGTHLLCAVG 1191 (1341)
Q Consensus 1118 ~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~------~~~v~~~~~~g 1191 (1341)
+.++|..|++++||+++|+.. .|.+|| +||+..++++|+++++.+.+..+..++- .-.+-|-+..|
T Consensus 2 I~~~Ll~G~~~~Av~~al~~~-----~wa~AL---lLAs~~g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g 73 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALDNG-----LWAHAL---LLASSLGPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSG 73 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT------HHHHH---HHHHTS-HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHCC-----ChHHHH---HHHHhcCHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcC
Confidence 578999999999999999999 888888 9999999999999999999988765552 12344556789
Q ss_pred cHHHHHHHhhcc------------CcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHH
Q 000707 1192 RYQEACSQLQDA------------GCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQ 1254 (1341)
Q Consensus 1192 ~~~~a~~~l~~~------------~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~ 1254 (1341)
+..+++.-|+.. +.|+|.+.+.-++.++++. ..|...++.|.+.+ +...|-.||+++|...
T Consensus 74 ~~~~~v~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~-~~l~~LGd~L~~~g-~~~aA~iCYllag~~~ 146 (284)
T PF12931_consen 74 NSPEAVDELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDS-QALCALGDRLWQRG-RVEAAHICYLLAGNPL 146 (284)
T ss_dssp -HHHHHHHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS--TT--HHHHHHHTT--HHHHHHHHHHTT---
T ss_pred CcHHHHHHhccccccccccccchhcCHHHHHHHHHhCCCcccH-HHHHHHHHHHHhCC-CcchhHHHHhHcCCcc
Confidence 999999988765 4899999999999877654 66777999998665 4679999999998644
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.02 E-value=1.7e-05 Score=103.45 Aligned_cols=188 Identities=11% Similarity=0.234 Sum_probs=127.5
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCC
Q 000707 612 ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTD 691 (1341)
Q Consensus 612 ~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~ 691 (1341)
+-..|.++.-+|.-.|-++|+.|+.+++|.- ..++.+ +.|-..+..+. +.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w-~~~~~v---------~~~rt~g~s~v-------tr------------- 2256 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEW-GHGQQV---------VCFRTAGNSRV-------TR------------- 2256 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEec-cCCCeE---------EEeeccCcchh-------hh-------------
Confidence 4567888888999999999999999999987 344322 22321111000 00
Q ss_pred CcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEE
Q 000707 692 GVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMG 771 (1341)
Q Consensus 692 g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasG 771 (1341)
.. ....|..+..+..||.+.+|.+..+.... + ..|......+.|=|..++++
T Consensus 2257 -----------------~~--f~~qGnk~~i~d~dg~l~l~q~~pk~~~s----~-----qchnk~~~Df~Fi~s~~~ta 2308 (2439)
T KOG1064|consen 2257 -----------------SR--FNHQGNKFGIVDGDGDLSLWQASPKPYTS----W-----QCHNKALSDFRFIGSLLATA 2308 (2439)
T ss_pred -----------------hh--hcccCCceeeeccCCceeecccCCcceec----c-----ccCCccccceeeeehhhhcc
Confidence 00 11235667788899999999987433211 1 13555567777756667765
Q ss_pred ---eCCCcEEEEECCC--CceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCC
Q 000707 772 ---DRSGNIRWWDVTT--GHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPG 846 (1341)
Q Consensus 772 ---s~DgtI~lWDl~t--g~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~ 846 (1341)
+.++++.+||..- +....-..|.+.++++++.|. . +.|++|+.+|.|+|||++..+ +..+.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~--~----qllisggr~G~v~l~D~rqrq-l~h~~------- 2374 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK--H----QLLISGGRKGEVCLFDIRQRQ-LRHTF------- 2374 (2439)
T ss_pred ccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc--c----eEEEecCCcCcEEEeehHHHH-HHHHh-------
Confidence 3688999999753 221112789999999999998 2 789999999999999998865 32221
Q ss_pred CcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 847 TLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 847 ~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.. |... . ++++|+..|.|+||++..
T Consensus 2375 -~~----~~~~-----~--~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2375 -QA----LDTR-----E--YFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred -hh----hhhh-----h--eeeccCcccceEEEEccc
Confidence 11 2221 3 678999999999999875
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.00 E-value=0.0032 Score=70.03 Aligned_cols=146 Identities=25% Similarity=0.330 Sum_probs=92.8
Q ss_pred eEeCCCC-eEEEEcCCeEEEEeCCCc--ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 30 ADLSPSG-LLAFASGSSISILDSRSL--QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 30 ~~~s~~g-llA~gs~~~V~v~d~~~~--~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
++.+.+| +||.-.+++|.|--.++. ..+....-++++ ++.=..|+|||| +.+||-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~--------~PQWRkl~WSpD--------------~tlLa~ 60 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDP--------NPQWRKLAWSPD--------------CTLLAY 60 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCC--------CchheEEEECCC--------------CcEEEE
Confidence 3456788 899889999988876642 122222223331 236678999986 588999
Q ss_pred EeCCCcEEEEeCCCCeEEEEecC----CC-CCCCCeeEEEEeecCCC---ccEEEEEeCCCeEEEEECCCCe-----EEE
Q 000707 107 ADRHGRVALLDFRLRSVVLWIDP----DP-NPKLGIQDLCWIVSKPD---SFVLAAINGPSVLSLYNTTSAS-----CMW 173 (1341)
Q Consensus 107 g~~dG~I~vWDv~tg~~~~~l~~----~~-h~~~~V~~l~wsp~~~~---~~lLas~s~d~~i~lWd~~tg~-----~i~ 173 (1341)
+...|+|+|.|+.. ..+..++. .+ -.. .|.+|.|...... +..|.+..-.|.++-+-+..|+ ..+
T Consensus 61 a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~-Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 61 AESTGTIRVFDLMG-SELFVIPPAMSFPGDLSD-AIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred EcCCCeEEEEeccc-ceeEEcCcccccCCcccc-ceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeE
Confidence 99999999999864 33333321 11 123 7888888765422 1356667678888877764432 334
Q ss_pred EEeC---CCCceEEEEEcCCCCCEEEEEeC
Q 000707 174 KYDA---SPEYLSCIRRNPFDARHFCVLGL 200 (1341)
Q Consensus 174 ~~~~---~~~~v~~~~fsP~d~~~la~~~~ 200 (1341)
.+.+ .+..|.++.++| .-+.|.++|.
T Consensus 139 sfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~ 167 (282)
T PF15492_consen 139 SFSFSSHYPHGINSAVYHP-KHRLLLVGGC 167 (282)
T ss_pred EEEecccCCCceeEEEEcC-CCCEEEEecc
Confidence 4443 245788899998 4455655544
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.98 E-value=7.6e-05 Score=85.49 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=102.4
Q ss_pred CCCCeEEEEecCCcEEEEEecCCe----eecccCCCCCCccccccceEEEEeecCCEEEE---EeCCCcEEEEECCCCce
Q 000707 715 DTSESFAFALANGALGVFEVHGRR----IRDFRPKWPSSSFISSDGLITAMAYRLPHVVM---GDRSGNIRWWDVTTGHS 787 (1341)
Q Consensus 715 ~~~e~la~~~~Dg~I~vwdv~~~~----v~~~~~~~~~~~l~~~~~~v~sla~dg~~Las---Gs~DgtI~lWDl~tg~~ 787 (1341)
+.++.+|.+..+....++++.++. +.+. .-.+.. ...++.+..+ ..+.. .+....+.+|....+..
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~-----~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKR-----PTAISFIRED-TSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCCcceeeeE-eecccC-----cceeeeeecc-ceEEEEeecCCceeeeeecccccCc
Confidence 556788888888888888875432 1110 000100 0123333333 33333 34455666777666777
Q ss_pred eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEE
Q 000707 788 SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVL 867 (1341)
Q Consensus 788 ~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~L 867 (1341)
..+-||-.-++.|+|||| + ++|+++-.|..|||=.....- ...++.-||. ..|..++-.+. . .|
T Consensus 145 ~~~lGhvSml~dVavS~D--~----~~IitaDRDEkIRvs~ypa~f-~IesfclGH~--eFVS~isl~~~-----~--~L 208 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPD--D----QFIITADRDEKIRVSRYPATF-VIESFCLGHK--EFVSTISLTDN-----Y--LL 208 (390)
T ss_pred chhhhhhhhhheeeecCC--C----CEEEEecCCceEEEEecCccc-chhhhccccH--hheeeeeeccC-----c--ee
Confidence 888999999999999999 4 789999999999997765544 3345556887 57888887764 4 47
Q ss_pred EEEECCCcEEEEEccCCce
Q 000707 868 CIAGADSSFRLIEVNTEKK 886 (1341)
Q Consensus 868 as~s~DgtIrvWdv~~~~~ 886 (1341)
+|||.|+++|+||+..+++
T Consensus 209 lS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eecCCCCcEEEEecccCCc
Confidence 8999999999999999877
No 288
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=5.3e-05 Score=91.40 Aligned_cols=240 Identities=15% Similarity=0.163 Sum_probs=145.9
Q ss_pred CCEEEEEeCCCcEEEEeCCC---CcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeee
Q 000707 529 VPLVALGTQSGAVDVVDVSA---NAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~t---g~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1341)
.++-++.+....-.+|++.. ..+...+.||+.+|+++.|.+..+-|++... .+-.+..||+++-. +++
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs--------vdt~vh~wd~rSp~-~p~ 151 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS--------VDTYVHAWDMRSPH-RPF 151 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc--------ccccceeeeccCCC-cce
Confidence 44555556666667999853 3455667899999999999998865543332 34478999998754 344
Q ss_pred EEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceE---EEEEcCCCCCCCCCCCCCccccccc
Q 000707 606 RVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFT---VLEWTLPTVPWPSQTGPSRQSSLSS 682 (1341)
Q Consensus 606 ~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~---~l~wsp~~~~~~~~~~~~k~~~~~~ 682 (1341)
.....-+ ..-..|+|+-..-.+++.+..+.|++||+.+....+..++.+++ +++|. ..
T Consensus 152 ys~~~w~-s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn----r~-------------- 212 (1081)
T KOG0309|consen 152 YSTSSWR-SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN----RF-------------- 212 (1081)
T ss_pred eeeeccc-ccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHh----hh--------------
Confidence 4333222 23456788854334444567788999999545556666665432 22222 00
Q ss_pred CCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCe------e-ecccCCCCCCcccccc
Q 000707 683 KDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR------I-RDFRPKWPSSSFISSD 755 (1341)
Q Consensus 683 ~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~------v-~~~~~~~~~~~l~~~~ 755 (1341)
. ...+.+.+.||+|+.|+.+... + +++ +.|.+.-+ ..
T Consensus 213 --------------------------------~-~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~-piw~~r~~--Pf 256 (1081)
T KOG0309|consen 213 --------------------------------K-YSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNF-PIWRGRYL--PF 256 (1081)
T ss_pred --------------------------------h-hhhhcccCCCCceeeecccccccccceeccccC-cceecccc--cc
Confidence 0 1123466789999999984321 1 111 12211100 11
Q ss_pred ceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCC--CCC--CCCEEEEEECCCeEEEE
Q 000707 756 GLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVP--GDR--SRGRIAVLFHDNTFSVF 827 (1341)
Q Consensus 756 ~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~--gd~--~~~~Las~s~DgtI~IW 827 (1341)
+.-.++-+ .|.++-.-..+.....|++.++. +++|.||...|....|--... ||. ..-.|++-+.|.++|+|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 22233444 33444555566777889988865 789999999998877653211 111 11248899999999999
Q ss_pred ECCCC
Q 000707 828 DLDSQ 832 (1341)
Q Consensus 828 Dl~~~ 832 (1341)
-+...
T Consensus 337 pI~~~ 341 (1081)
T KOG0309|consen 337 PIDSQ 341 (1081)
T ss_pred eccHH
Confidence 88764
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.94 E-value=0.18 Score=65.65 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=79.2
Q ss_pred ccCCcchhhHHHhcC--cHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHH
Q 000707 1177 NDRSLSGTHLLCAVG--RYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQ 1254 (1341)
Q Consensus 1177 ~~~~~~~v~~~~~~g--~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~ 1254 (1341)
.+++++|+--+..+| -+.|..+|.+.++.+.+|+.|-+.+. +-+..++.-||+||.+..+ ..+|.+.|.++|+++
T Consensus 893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~--e~~k~i~~~ya~hL~~~~~-~~~Aal~Ye~~Gkle 969 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDS--EKQKVIYEAYADHLREELM-SDEAALMYERCGKLE 969 (1265)
T ss_pred HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCH--HHHHHHHHHHHHHHHHhcc-ccHHHHHHHHhccHH
Confidence 567889999999999 78999999999999999999999887 7778999999999987765 458999999999999
Q ss_pred HHHHHHHhcCCchHHHH
Q 000707 1255 EALAALREAQHPDTAAM 1271 (1341)
Q Consensus 1255 ~a~~~l~~~~~~~~aa~ 1271 (1341)
+|++.-.+.+....|+-
T Consensus 970 kAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHHHHHhccHHHHHH
Confidence 99998888666665533
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.94 E-value=0.011 Score=71.95 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=113.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCC
Q 000707 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASP 179 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~ 179 (1341)
++..+..++.+|.+.-+|..+|+.+-.....+ .+.+--...+ ..+.....++.|...|..+|+.+|++....
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v~~----~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 190 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVVSD----GLVLVHTSNGMLQALNESDGAVKWTVNLDV 190 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEEEC----CEEEEECCCCEEEEEEccCCCEeeeecCCC
Confidence 35567778889999999999998765543322 2211001111 355567778999999999999999987531
Q ss_pred CceE-EEEEcCC-CCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCc--chhhhhhhhhccccCCCCCCCCcCccc
Q 000707 180 EYLS-CIRRNPF-DARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDC--TELLKLERELSAGAASLSPASGLFPLY 255 (1341)
Q Consensus 180 ~~v~-~~~fsP~-d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~--~~l~~l~~~~~~~s~~~~p~~~~~~~~ 255 (1341)
..+. ....+|- ....+.+++.+|.+..+|...... .-++.+.... ..+.++.
T Consensus 191 ~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~----~W~~~~~~~~~~~~~~~~~-------------------- 246 (394)
T PRK11138 191 PSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL----IWQQRISQPTGATEIDRLV-------------------- 246 (394)
T ss_pred CcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh----hheeccccCCCccchhccc--------------------
Confidence 1110 0011221 223566667788888877533110 0011000000 0000000
Q ss_pred eEEEEEcc--CCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceee
Q 000707 256 MVKFTFSP--HWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVH 333 (1341)
Q Consensus 256 v~~~afSp--dg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~ 333 (1341)
.+.-+| .+..+..++.++.+..+|+++|+.+....... .... ..+++.||.+..||.|...|.++|+.++
T Consensus 247 --~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 247 --DVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDF--AVDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred --ccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCc--EEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 000111 24466677789999999999999887654321 1111 1257789999999999999999988655
Q ss_pred e
Q 000707 334 V 334 (1341)
Q Consensus 334 ~ 334 (1341)
.
T Consensus 319 ~ 319 (394)
T PRK11138 319 S 319 (394)
T ss_pred c
Confidence 3
No 291
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.92 E-value=2.3e-05 Score=61.44 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=35.5
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe
Q 000707 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD 117 (1341)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWD 117 (1341)
++++++|.+|+. .|++|+|+|+ +.+||||+.|++|+|||
T Consensus 1 g~~~~~~~~h~~-----------~i~~i~~~~~--------------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSS-----------SINSIAWSPD--------------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSS-----------SEEEEEEETT--------------SSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCC-----------cEEEEEEecc--------------cccceeeCCCCEEEEEC
Confidence 467889999998 9999999986 57899999999999998
No 292
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.91 E-value=0.00012 Score=82.05 Aligned_cols=251 Identities=11% Similarity=0.119 Sum_probs=158.7
Q ss_pred EEEeeeccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEe-CCCCcEEEEEe-ecCCCeEEEEEc
Q 000707 491 VSLDGQLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVD-VSANAVTASFS-VHNGTVRGLRWL 568 (1341)
Q Consensus 491 ~~l~g~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWD-l~tg~~~~~l~-~H~~~V~~l~fs 568 (1341)
+.+...+.||...|++...-| ..+-+.+.+.|.++|||- ..+|+--..+. .-+.+++++++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~----------------~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~ 77 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIP----------------KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV 77 (404)
T ss_pred hhhhhhhcCchhhhhhheecc----------------CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee
Confidence 334445667888888776666 245578999999999995 33443222221 124688999999
Q ss_pred CCCcEEEEecCCcccccCcccCeEEEEEccC--CceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCC
Q 000707 569 GNSRLVSFSYSQVNEKSGGYINRLVVTCLRS--GINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNP 646 (1341)
Q Consensus 569 ~d~~llS~s~d~~~~~sg~~~~~i~lwD~~t--G~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~ 646 (1341)
...+.+..+.+. +++.-+-+.. .+...+|.. -.|..+|.++-|+-.-.++++.+.|+.+ .|-..+.+
T Consensus 78 ~e~~~L~vg~~n---------gtvtefs~sedfnkm~~~r~~-~~h~~~v~~~if~~~~e~V~s~~~dk~~-~~hc~e~~ 146 (404)
T KOG1409|consen 78 SESRRLYVGQDN---------GTVTEFALSEDFNKMTFLKDY-LAHQARVSAIVFSLTHEWVLSTGKDKQF-AWHCTESG 146 (404)
T ss_pred ccceEEEEEEec---------ceEEEEEhhhhhhhcchhhhh-hhhhcceeeEEecCCceeEEEeccccce-EEEeeccC
Confidence 988877776653 2232222211 111123322 2388899999999888999999999875 57654555
Q ss_pred ceeeeccCceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecC
Q 000707 647 IMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALAN 726 (1341)
Q Consensus 647 ~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~D 726 (1341)
..+..+ + -..+ +.... -+-.....+...
T Consensus 147 ~~lg~Y---~-~~~~--~t~~~----------------------------------------------~d~~~~fvGd~~ 174 (404)
T KOG1409|consen 147 NRLGGY---N-FETP--ASALQ----------------------------------------------FDALYAFVGDHS 174 (404)
T ss_pred Ccccce---E-eecc--CCCCc----------------------------------------------eeeEEEEecccc
Confidence 433211 1 0111 10000 000111233445
Q ss_pred CcEEEEEecCCeeecccCCCCCCccccccceEEEEeec--CCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEE
Q 000707 727 GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYR--LPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKF 802 (1341)
Q Consensus 727 g~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~d--g~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~f 802 (1341)
|.|....+..+.+..+ . .+.+|.+.+++++|| ...|.+|..|..|.+||+..++ ...+.+|...|+.+..
T Consensus 175 gqvt~lr~~~~~~~~i-~-----~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 175 GQITMLKLEQNGCQLI-T-----TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred cceEEEEEeecCCceE-E-----EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 6665555433222111 0 133788999999994 4589999999999999997654 5678999999999987
Q ss_pred ccCCCCCCCCCEEEEEECCCeEEEEECCCC
Q 000707 803 SPVVPGDRSRGRIAVLFHDNTFSVFDLDSQ 832 (1341)
Q Consensus 803 SP~~~gd~~~~~Las~s~DgtI~IWDl~~~ 832 (1341)
.+.. +++.+++.||.|.+||.+..
T Consensus 249 ~~~t------~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 249 AQHT------RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhh------eeeeeccCCCeEEEEeccce
Confidence 7762 67899999999999998754
No 293
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.89 E-value=0.0048 Score=75.27 Aligned_cols=98 Identities=19% Similarity=0.140 Sum_probs=74.1
Q ss_pred cChHHHHHHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhcccc-HHHHHHHHHHHHHHHHHccCCcchhhH
Q 000707 1108 LEGEQAIQNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVS-RSLLELAVKVVAANMVRNDRSLSGTHL 1186 (1341)
Q Consensus 1108 ~~~~e~~~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s-~~~~~~~~k~~a~~l~~~~~~~~~v~~ 1186 (1341)
++.++.=+++++.++..|+++-|-+.+-.+. | ..+..+|.++.+ .+.+ +.+|+.-...|+.--+.+.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-d-------~~~L~lLy~~~g~~~~L----~kl~~~a~~~~~~n~af~~ 411 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK-D-------FSGLLLLYSSTGDREKL----SKLAKIAEERGDINIAFQA 411 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHH----HHHHHHHHHTT-HHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc-C-------ccccHHHHHHhCCHHHH----HHHHHHHHHccCHHHHHHH
Confidence 4555666899999999999999999888777 4 444445555554 4333 3345545557887888899
Q ss_pred HHhcCcHHHHHHHhhccCcHHHHHHHHHhhc
Q 000707 1187 LCAVGRYQEACSQLQDAGCWTDAATLAATHL 1217 (1341)
Q Consensus 1187 ~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l 1217 (1341)
+...|++++.++.|...|++-+|+..|+++.
T Consensus 412 ~~~lgd~~~cv~lL~~~~~~~~A~~~A~ty~ 442 (443)
T PF04053_consen 412 ALLLGDVEECVDLLIETGRLPEAALFARTYG 442 (443)
T ss_dssp HHHHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 294
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.042 Score=63.12 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=114.7
Q ss_pred CCcEEEEeCCCCe-EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC---CCeEEEEECC--CCeEE--EEEeCCCCc
Q 000707 110 HGRVALLDFRLRS-VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING---PSVLSLYNTT--SASCM--WKYDASPEY 181 (1341)
Q Consensus 110 dG~I~vWDv~tg~-~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~---d~~i~lWd~~--tg~~i--~~~~~~~~~ 181 (1341)
++-|.+|++.+.. .+..+..-.... .++-|+|+|++ +.|-++.. ++.|.-+.++ .|+.- ........+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~-nptyl~~~~~~---~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~ 90 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELG-NPTYLAVNPDQ---RHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP 90 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccC-CCceEEECCCC---CEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC
Confidence 5679999986432 112211223344 68899999987 67776654 4677776655 46532 222221223
Q ss_pred eEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000707 182 LSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1341)
Q Consensus 182 v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1341)
-..+++++ +++.++++ ...|.|.++-+...+......... . + +... |.+......+-..-
T Consensus 91 p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~------------~-h-~g~~----p~~rQ~~~h~H~a~ 151 (346)
T COG2706 91 PCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV------------K-H-TGSG----PHERQESPHVHSAN 151 (346)
T ss_pred CeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeee------------e-c-CCCC----CCccccCCccceee
Confidence 36789999 88777766 456888876543321100000110 0 0 0100 11011111244558
Q ss_pred EccCCCceEEEEc-CCeEEEEEcCCCceeEE--EecCCCccceEEEEEcCCCCEEEEEec-CCcEEEEeccC
Q 000707 261 FSPHWRHIIFVTF-PRELVVFDLQYETPLFS--AALPRGCAKFLDVLADPNNDLLYCAHL-DGKLSIWRRKE 328 (1341)
Q Consensus 261 fSpdg~~l~~~~~-d~~I~iwDl~t~~~l~~--~~l~~~~~~~~~v~~~pdg~~L~s~~~-DgtI~lW~~~~ 328 (1341)
|.||++.+++... --.|.+||++.|..... ..++ .++....++|.|++++.|+..+ +++|.+|....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 9999998888763 24588999998865321 1222 2345677899999999999775 99999998764
No 295
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.89 E-value=0.0019 Score=78.88 Aligned_cols=125 Identities=2% Similarity=-0.151 Sum_probs=73.6
Q ss_pred CCC-EEEEEeCC---CcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCcee
Q 000707 528 AVP-LVALGTQS---GAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINR 603 (1341)
Q Consensus 528 ~~~-llAsGs~D---GtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~ 603 (1341)
+|+ +++..+.+ ..|.++|+.+|+..... ...+.+....|+|||+.+.+..+. .| +..|.++|+.+|..+
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~----~g--~~~Iy~~dl~~g~~~ 270 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAP----KG--QPDIYLYDTNTKTLT 270 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEcc----CC--CcEEEEEECCCCcEE
Confidence 566 46644433 46999999988764433 244556678899999766555432 11 357899999888744
Q ss_pred eeEEeccCCCCCeEEEEECCCCCEEEEEEC-CC--cEEEEeccCCCceeeeccCceEEEEEcCC
Q 000707 604 AFRVLQKPERAPIRALRASSSGRYLLILFR-DA--PVEVWAMTKNPIMLRSLALPFTVLEWTLP 664 (1341)
Q Consensus 604 ~l~~l~~~~~~~I~~i~~SpdG~~Las~s~-D~--~I~vWDl~~t~~~l~~l~~~v~~l~wsp~ 664 (1341)
.+.. +........|||||+.|+-.+. .+ .|.+.|+ .++...+..........|+|+
T Consensus 271 ~LT~----~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl-~~g~~~rlt~~g~~~~~~SPD 329 (419)
T PRK04043 271 QITN----YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKL-NSGSVEQVVFHGKNNSSVSTY 329 (419)
T ss_pred Eccc----CCCccCccEECCCCCEEEEEECCCCCceEEEEEC-CCCCeEeCccCCCcCceECCC
Confidence 4432 1111234579999998876653 33 3555666 455443322111112367665
No 296
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.88 E-value=3.2e-05 Score=101.06 Aligned_cols=187 Identities=14% Similarity=0.164 Sum_probs=135.1
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1341)
+|...+-.||+.||.|++|....+..+..+...|. . .|+.+.|+..| .....+.+||.|.+|.+. .++......
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s-~vtr~~f~~qG---nk~~i~d~dg~l~l~q~~-pk~~~s~qc 2290 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-S-RVTRSRFNHQG---NKFGIVDGDGDLSLWQAS-PKPYTSWQC 2290 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-c-hhhhhhhcccC---CceeeeccCCceeecccC-Ccceecccc
Confidence 67788899999999999999988887777755554 4 79999999877 567778889999999985 555545555
Q ss_pred CCCceEEEEEcCCCCCEEEEEe---CCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000707 178 SPEYLSCIRRNPFDARHFCVLG---LKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1341)
Q Consensus 178 ~~~~v~~~~fsP~d~~~la~~~---~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1341)
|....+.|+|=- ..++++| .++.+.+||..-. .....|. ..|..
T Consensus 2291 hnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~------~~~s~v~------------------------~~H~~ 2337 (2439)
T KOG1064|consen 2291 HNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLP------PMNSLVH------------------------TCHDG 2337 (2439)
T ss_pred CCccccceeeee---hhhhccccCCCCCcccchhcccC------cccceee------------------------eecCC
Confidence 566677777743 5566653 3578888874221 1222221 11222
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeee
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHV 334 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~ 334 (1341)
....++|-|.-..+++++.+|+|.|||+.-.+.++.++. + . .+.++++++..|.|+||+..+-..+++
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~--~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------L--D-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------h--h-hhheeeccCcccceEEEEccccchhhc
Confidence 345569999999999999999999999998877655431 1 1 467899999999999999875443344
Q ss_pred e
Q 000707 335 M 335 (1341)
Q Consensus 335 ~ 335 (1341)
+
T Consensus 2406 ~ 2406 (2439)
T KOG1064|consen 2406 F 2406 (2439)
T ss_pred C
Confidence 3
No 297
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=2.9e-05 Score=90.35 Aligned_cols=191 Identities=14% Similarity=0.191 Sum_probs=127.1
Q ss_pred cEEEEEeCCCcEEEEeCCC-----CeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE-
Q 000707 102 LLLAAADRHGRVALLDFRL-----RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY- 175 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~t-----g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~- 175 (1341)
.-++|++.|.+|++|.++. |.....|.++.|.+ +|.++.|..+- +.++++ |+.|.+||.--|+++..+
T Consensus 748 NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-~i~~igfL~~l---r~i~Sc--D~giHlWDPFigr~Laq~~ 821 (1034)
T KOG4190|consen 748 NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-PIHDIGFLADL---RSIASC--DGGIHLWDPFIGRLLAQME 821 (1034)
T ss_pred cceeeccCCceEEEEEeccccCccccceeeeEhhhccC-cccceeeeecc---ceeeec--cCcceeecccccchhHhhh
Confidence 4588999999999999853 22334566788999 99999999875 677766 789999998888766422
Q ss_pred e----CCCCceEEEEEcCC-CCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCC
Q 000707 176 D----ASPEYLSCIRRNPF-DARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPAS 249 (1341)
Q Consensus 176 ~----~~~~~v~~~~fsP~-d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~ 249 (1341)
. +..+.|.|+ |. |...+.++ +...+|+.+|...-.. .-++.+. . +|.
T Consensus 822 dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~----~~E~kVc--------------n-----a~~- 874 (1034)
T KOG4190|consen 822 DAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEW----TCELKVC--------------N-----APG- 874 (1034)
T ss_pred cCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccc----eeeEEec--------------c-----CCC-
Confidence 1 112344443 43 33333333 5678888887543111 1122210 0 111
Q ss_pred CcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEE-EeccC
Q 000707 250 GLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSI-WRRKE 328 (1341)
Q Consensus 250 ~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~l-W~~~~ 328 (1341)
. ...+..++..|.|..++.+...|.|.+.|..+|+.+.... +..+ ..++++ .|..+.|+....|.++.+ |..-.
T Consensus 875 P--na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmec-dllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 875 P--NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR-PMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred C--chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC-cccc-hhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 0 1124456889999999999999999999999999876553 1111 233333 366778999999999999 98876
Q ss_pred Cc
Q 000707 329 GE 330 (1341)
Q Consensus 329 g~ 330 (1341)
|.
T Consensus 950 gi 951 (1034)
T KOG4190|consen 950 GI 951 (1034)
T ss_pred Ce
Confidence 65
No 298
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.86 E-value=0.016 Score=64.70 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=54.1
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCC--CceeEEEecCCCccce-EEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQY--ETPLFSAALPRGCAKF-LDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t--~~~l~~~~l~~~~~~~-~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
++.+.||+ ++++..|..|.|=..++ ...+++...+.-+.|. ..++++||+..||.++..|+|++.|.-. ..+..+
T Consensus 3 ~~~~~~Gk-~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGK-LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVI 80 (282)
T ss_pred eeecCCCc-EEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEc
Confidence 46788886 55566888887777764 3555666655444443 4688899999999999999999999863 434444
No 299
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.84 E-value=0.031 Score=63.10 Aligned_cols=225 Identities=17% Similarity=0.157 Sum_probs=135.5
Q ss_pred ceEeCC-CC-eEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEc-cCCCccccCCCCCCCCCcEE
Q 000707 29 SADLSP-SG-LLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWI-PITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 29 a~~~s~-~g-llA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s-p~~~~~~~~s~~~~p~g~~L 104 (1341)
+..|.+ +| |+... .++.|..||+.+++... +..+ ....+++. ++ | .|
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-------------~~~G~~~~~~~--------------g-~l 54 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-------------GPNGMAFDRPD--------------G-RL 54 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-------------SEEEEEEECTT--------------S-EE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-------------CCceEEEEccC--------------C-EE
Confidence 567887 66 55555 36789999998876532 2211 23456666 33 3 45
Q ss_pred EEEeCCCcEEEEeCCCCeEEEEecC--CCCCCCCeeEEEEeecCCCccEEEEEeCC--------CeEEEEECCCCeEEEE
Q 000707 105 AAADRHGRVALLDFRLRSVVLWIDP--DPNPKLGIQDLCWIVSKPDSFVLAAINGP--------SVLSLYNTTSASCMWK 174 (1341)
Q Consensus 105 ASg~~dG~I~vWDv~tg~~~~~l~~--~~h~~~~V~~l~wsp~~~~~~lLas~s~d--------~~i~lWd~~tg~~i~~ 174 (1341)
..++..+ +.+.|..+++....+.. ..+.....+++++.|++ .+.++-... +.|..++.. |+....
T Consensus 55 ~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G---~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 55 YVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG---NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp EEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS----EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred EEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC---CEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 5555555 45559999976554433 22122268999999987 666665433 457777776 554333
Q ss_pred EeCCCCceEEEEEcCCCCCEEE-EEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCc
Q 000707 175 YDASPEYLSCIRRNPFDARHFC-VLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFP 253 (1341)
Q Consensus 175 ~~~~~~~v~~~~fsP~d~~~la-~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~ 253 (1341)
... -...+.++|+| |++.|. +-+..+.|..+++..... ....++..+. +. ...
T Consensus 130 ~~~-~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~-~~~~~~~~~~--------~~---------------~~~ 183 (246)
T PF08450_consen 130 ADG-LGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGG-ELSNRRVFID--------FP---------------GGP 183 (246)
T ss_dssp EEE-ESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTC-CEEEEEEEEE---------S---------------SSS
T ss_pred ecC-cccccceEECC-cchheeecccccceeEEEecccccc-ceeeeeeEEE--------cC---------------CCC
Confidence 322 34567899999 888765 456678888888754221 0111111110 00 001
Q ss_pred cceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEE-cCCCCEEEEEe
Q 000707 254 LYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLA-DPNNDLLYCAH 316 (1341)
Q Consensus 254 ~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~ 316 (1341)
...-.+++..+|+-.++.-..+.|.++|.+ |+.+..+.++. .....++| .++.+.||..+
T Consensus 184 g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 184 GYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp CEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred cCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence 124467899999755555578999999998 99998888772 35667777 57878777554
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.80 E-value=0.00024 Score=90.87 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=133.3
Q ss_pred HHcCCHHHHHHHhhcCCCCCchhHHHHHHHh----------hhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcC
Q 000707 1122 VSVGNLEAAVSLLLSTSPESSYFYANALRAV----------ALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVG 1191 (1341)
Q Consensus 1122 ~~lG~~~~av~lLl~~~pe~~~~~~~al~a~----------~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g 1191 (1341)
..||+.++|+..|-+.+++ ||.+.+.-. ++= .-+++-.+..-..+|++|+.+.++++|.-+|-.+|
T Consensus 891 ~~L~ry~~AL~hLs~~~~~---~~~e~~n~I~kh~Ly~~aL~ly-~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 891 DYLKRYEDALSHLSECGET---YFPECKNYIKKHGLYDEALALY-KPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHHHHcCcc---ccHHHHHHHHhcccchhhhhee-ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 3456788888888887753 443333211 111 12455667777889999999999999999999999
Q ss_pred cHHHHHHHhhccCcHHHHHHHHHhhc-CCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHH
Q 000707 1192 RYQEACSQLQDAGCWTDAATLAATHL-KGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAA 1270 (1341)
Q Consensus 1192 ~~~~a~~~l~~~~~w~~a~~la~~~l-~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~~~~~~~aa 1270 (1341)
+.++|....++.+.|++|+.+|+.-- ...|...+-+..+..|.+.++....|.++...+++..+|..+|-+.+.|..|-
T Consensus 967 klekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 967 KLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHH
Confidence 99999999999999999999998664 33344445588999997777656677777778999999999999999999997
Q ss_pred HHHHHHH--HHhhhhhcccCCCCCCCCCccCCcCCCCCCCCCCchhhhHHHHHHHHHHHHHh
Q 000707 1271 MFVLACR--EIYAEIITNLENSDDESGSSTNNVPDNLPGLSPENEDVRAVGEYFGQYQRKLV 1330 (1341)
Q Consensus 1271 ~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1330 (1341)
..+.... +...+.+.. --+-+...-.|.|..+-|-|+.|.++|.
T Consensus 1047 rva~~~~~~d~iee~l~~----------------al~e~~~~~~~~L~~~k~~f~~yk~RLl 1092 (1265)
T KOG1920|consen 1047 RVASKAKRDDIIEEVLKP----------------ALLEAFGEVLEFLEDVKEQFVKYKKRLL 1092 (1265)
T ss_pred HHHHhcccchHHHHHHhH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665422 111111110 0000122334777787888888877664
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.73 E-value=0.00014 Score=80.23 Aligned_cols=234 Identities=14% Similarity=0.226 Sum_probs=138.6
Q ss_pred CCCCCceEeCCCC-eEEEEc-CCeEEEEeCCCc-----ceeEeecCCCCCCCCCCCCC-----CCcEEEEEEccCCCccc
Q 000707 24 RNNFGSADLSPSG-LLAFAS-GSSISILDSRSL-----QLISTIPIPPPTSAGSVASL-----SPFVTAVKWIPITLRCD 91 (1341)
Q Consensus 24 ~~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~-----~~~~~l~~H~~~~~~~~~~~-----~~~Vt~v~~sp~~~~~~ 91 (1341)
.+-+.++.|...| .+|+|- ++.|+++..... +....+.+|.. --+|+ ...|..+.|..++.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~----EFDYLkSleieEKin~I~w~~~t~--- 98 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL----EFDYLKSLEIEEKINAIEWFDDTG--- 98 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhccccc----chhhhhhccHHHHhhheeeecCCC---
Confidence 3456899999888 788885 578888875432 33445777764 12333 45789999987652
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE--EE-------------------------Ee----------c----CC
Q 000707 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSV--VL-------------------------WI----------D----PD 130 (1341)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~--~~-------------------------~l----------~----~~ 130 (1341)
...+|+|+ .|.+|++|.+..... +. .+ + .-
T Consensus 99 --------r~hFLlst-NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 99 --------RNHFLLST-NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred --------cceEEEec-CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 24456664 689999999865410 00 00 0 01
Q ss_pred CCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEE-Ee--CC-----CCceEEEEEcCCCCCEEEEEeCCC
Q 000707 131 PNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWK-YD--AS-----PEYLSCIRRNPFDARHFCVLGLKG 202 (1341)
Q Consensus 131 ~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~-~~--~~-----~~~v~~~~fsP~d~~~la~~~~dG 202 (1341)
.|.- .|+++.|..|. +.+.++. |-.|-+|++.--..-.+ .+ .+ ++.|++..|+|-....+.-.+..|
T Consensus 170 aH~y-hiNSiS~NsD~---et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 170 AHPY-HINSISFNSDK---ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred ccee-EeeeeeecCch---heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 2322 57778887665 6666654 77899999863221111 11 11 345778899997777777788899
Q ss_pred eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEc
Q 000707 203 LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDL 282 (1341)
Q Consensus 203 ~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl 282 (1341)
.|.+.|++-..--+...+.+...-+.-...-++. .-..+..+.||++||.+++-.+ -+|.|||.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e---------------ivsSISD~kFs~ngryIlsRdy-ltvkiwDv 308 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE---------------IVSSISDFKFSDNGRYILSRDY-LTVKIWDV 308 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHH---------------HhhhhcceEEcCCCcEEEEecc-ceEEEEec
Confidence 9999887532111111111110000000000000 0113557899999998776544 78999999
Q ss_pred CC-CceeEEEecC
Q 000707 283 QY-ETPLFSAALP 294 (1341)
Q Consensus 283 ~t-~~~l~~~~l~ 294 (1341)
.. ..++.+++++
T Consensus 309 nm~k~pikTi~~h 321 (460)
T COG5170 309 NMAKNPIKTIPMH 321 (460)
T ss_pred ccccCCceeechH
Confidence 84 3556666553
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.71 E-value=0.00081 Score=74.34 Aligned_cols=255 Identities=16% Similarity=0.248 Sum_probs=148.5
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEEeecC------------CCeEE
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA-----VTASFSVHN------------GTVRG 564 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~-----~~~~l~~H~------------~~V~~ 564 (1341)
..||+|-|.- .|.+||+|...|.|.++.-+... ...+|++|. ..|..
T Consensus 27 d~ItaVefd~----------------tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~ 90 (460)
T COG5170 27 DKITAVEFDE----------------TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINA 90 (460)
T ss_pred ceeeEEEecc----------------ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhh
Confidence 4578888775 47899999999999999865332 234566774 25788
Q ss_pred EEEcCCC---cEEEEecCCcccccCcccCeEEEEEccCCce---------------------------------------
Q 000707 565 LRWLGNS---RLVSFSYSQVNEKSGGYINRLVVTCLRSGIN--------------------------------------- 602 (1341)
Q Consensus 565 l~fs~d~---~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~--------------------------------------- 602 (1341)
|.|..++ .++.... +.+|++|.+.....
T Consensus 91 I~w~~~t~r~hFLlstN----------dktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia 160 (460)
T COG5170 91 IEWFDDTGRNHFLLSTN----------DKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA 160 (460)
T ss_pred eeeecCCCcceEEEecC----------CceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE
Confidence 8997654 3443222 34899998743200
Q ss_pred -eeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCceEEEEEcCCCCCCCCCCCCCcccccc
Q 000707 603 -RAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALPFTVLEWTLPTVPWPSQTGPSRQSSLS 681 (1341)
Q Consensus 603 -~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~v~~l~wsp~~~~~~~~~~~~k~~~~~ 681 (1341)
++-|.....|...|.+|.|..|...++++ .|=.|.+|++. -. .+.|+-+..-|....
T Consensus 161 a~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~-i~------D~sFnIVDiKP~nme-------------- 218 (460)
T COG5170 161 AKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLE-II------DGSFNIVDIKPHNME-------------- 218 (460)
T ss_pred eccceeccccceeEeeeeeecCchheeeec-cceeeeecccc-cc------CCceEEEeccCccHH--------------
Confidence 01111113366678899999998888765 67789999983 21 112322222221000
Q ss_pred cCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeec-----ccCCCCC---Ccccc
Q 000707 682 SKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRD-----FRPKWPS---SSFIS 753 (1341)
Q Consensus 682 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~-----~~~~~~~---~~l~~ 753 (1341)
++..+.++ + ++. .....+|...+..|+|++-|++...+-+ +...+.+ .-|.+
T Consensus 219 -----------eLteVItS----a----eFh-p~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e 278 (460)
T COG5170 219 -----------ELTEVITS----A----EFH-PEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE 278 (460)
T ss_pred -----------HHHHHHhh----c----ccC-HhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH
Confidence 00000000 0 010 1123567777889999999986432211 0000100 01233
Q ss_pred ccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc--eeeeccCC------------CcE---EEEEEccCCCCCCCCCE
Q 000707 754 SDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHR------------EGI---RRIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 754 ~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~------------~~V---~~V~fSP~~~gd~~~~~ 814 (1341)
...+|..+-| .|+++++-+. -+|++||++..+ +.+++-|. ..| ..+.||.+ . +.
T Consensus 279 ivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd--~----~~ 351 (460)
T COG5170 279 IVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGD--D----KH 351 (460)
T ss_pred HhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCC--c----cc
Confidence 4456777878 6777777544 689999998754 56665553 233 34778876 2 56
Q ss_pred EEEEECCCeEEEEECCC
Q 000707 815 IAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 815 Las~s~DgtI~IWDl~~ 831 (1341)
+.+|++.+...|+-+.+
T Consensus 352 v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 352 VLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ccccccccceeeecccc
Confidence 88898888888886544
No 303
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.039 Score=63.30 Aligned_cols=252 Identities=14% Similarity=0.124 Sum_probs=145.0
Q ss_pred CCCCceEeCCCC--eEEEE-c--CCeEE--EEeCCCccee----EeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccC
Q 000707 25 NNFGSADLSPSG--LLAFA-S--GSSIS--ILDSRSLQLI----STIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1341)
Q Consensus 25 ~~~~a~~~s~~g--llA~g-s--~~~V~--v~d~~~~~~~----~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1341)
.|..=+.|+|++ |.+.. . .+.|. =||..+|.+- +++.|+. -+.|+.+++
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~-------------p~yvsvd~~------- 99 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSP-------------PCYVSVDED------- 99 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCC-------------CeEEEECCC-------
Confidence 356679999998 33222 1 24443 4677767652 2333433 267888765
Q ss_pred CCCCCCCCcEEEEEeC-CCcEEEEeCCC-CeEEEEecCCCCCC---------CCeeEEEEeecCCCccEEEEEeC-CCeE
Q 000707 94 STEPGSSHLLLAAADR-HGRVALLDFRL-RSVVLWIDPDPNPK---------LGIQDLCWIVSKPDSFVLAAING-PSVL 161 (1341)
Q Consensus 94 s~~~~p~g~~LASg~~-dG~I~vWDv~t-g~~~~~l~~~~h~~---------~~V~~l~wsp~~~~~~lLas~s~-d~~i 161 (1341)
|++|.++.. .|.|.|.-+++ |..........|.+ +.+....+.|++ ++|++.+- --.|
T Consensus 100 -------g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~---~~l~v~DLG~Dri 169 (346)
T COG2706 100 -------GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG---RYLVVPDLGTDRI 169 (346)
T ss_pred -------CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC---CEEEEeecCCceE
Confidence 577888864 58999999855 54332211122323 027778889987 78887752 2468
Q ss_pred EEEECCCCeEEEE----EeCCCCceEEEEEcCCCCCEEEE-EeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000707 162 SLYNTTSASCMWK----YDASPEYLSCIRRNPFDARHFCV-LGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1341)
Q Consensus 162 ~lWd~~tg~~i~~----~~~~~~~v~~~~fsP~d~~~la~-~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1341)
.++++..|..... +.. ...-.-+.|+| +++..=+ .=.++.|.+|...+.... ..++ +++..
T Consensus 170 ~~y~~~dg~L~~~~~~~v~~-G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~---~~~l---------Q~i~t 235 (346)
T COG2706 170 FLYDLDDGKLTPADPAEVKP-GAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGK---FEEL---------QTIDT 235 (346)
T ss_pred EEEEcccCccccccccccCC-CCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCce---EEEe---------eeecc
Confidence 8999987753211 111 12235688999 6665533 344788888876552110 1111 11110
Q ss_pred hhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcC--CCceeEEEec-CCCccceEEEEEcCCCCEE
Q 000707 237 ELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQ--YETPLFSAAL-PRGCAKFLDVLADPNNDLL 312 (1341)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~--t~~~l~~~~l-~~~~~~~~~v~~~pdg~~L 312 (1341)
.|+.-........+..+||||.|.+.- ....|.+|-+. +|+ +..+.. ..+.....++.+.+.|++|
T Consensus 236 ---------lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 236 ---------LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred ---------CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEE
Confidence 121111123466788999998765543 34578888776 343 322221 1122224567788999999
Q ss_pred EEEecC-CcEEEEec--cCCc
Q 000707 313 YCAHLD-GKLSIWRR--KEGE 330 (1341)
Q Consensus 313 ~s~~~D-gtI~lW~~--~~g~ 330 (1341)
+++++| .+|.++.+ ++|+
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 306 IAANQKSDNITVFERDKETGR 326 (346)
T ss_pred EEEccCCCcEEEEEEcCCCce
Confidence 998876 56788766 4565
No 304
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.70 E-value=0.034 Score=63.79 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=73.6
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEE--E--eecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeE
Q 000707 531 LVALGTQSGAVDVVDVSANAVTAS--F--SVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFR 606 (1341)
Q Consensus 531 llAsGs~DGtI~lWDl~tg~~~~~--l--~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~ 606 (1341)
.|-..+++-++-.-|..+|+++.+ | .-|.-.|+-|++.++|.++.+-..... .+..---+-+++ .|. .++
T Consensus 130 kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~--~~~~~PLva~~~--~g~--~~~ 203 (305)
T PF07433_consen 130 KLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD--PGDAPPLVALHR--RGG--ALR 203 (305)
T ss_pred ecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCC--CCccCCeEEEEc--CCC--cce
Confidence 344567777888888899987765 5 347789999999999877654432100 000001122222 232 122
Q ss_pred EeccC------CCCCeEEEEECCCCCEEEEE-ECCCcEEEEeccCCCceeeecc
Q 000707 607 VLQKP------ERAPIRALRASSSGRYLLIL-FRDAPVEVWAMTKNPIMLRSLA 653 (1341)
Q Consensus 607 ~l~~~------~~~~I~~i~~SpdG~~Las~-s~D~~I~vWDl~~t~~~l~~l~ 653 (1341)
.+..+ -...|-+|+++++|.++++. =+.+.+-+||. .++.++....
T Consensus 204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~-~tg~~~~~~~ 256 (305)
T PF07433_consen 204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA-ATGRLLGSVP 256 (305)
T ss_pred eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC-CCCCEeeccc
Confidence 22211 23578999999999888655 47889999999 7888877544
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.66 E-value=0.00012 Score=57.41 Aligned_cols=37 Identities=22% Similarity=0.435 Sum_probs=33.7
Q ss_pred eeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEe
Q 000707 604 AFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 604 ~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWD 641 (1341)
+++++++ |..+|++|+|+|++++|++++.|++|++||
T Consensus 3 ~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5566666 889999999999999999999999999997
No 306
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00019 Score=83.90 Aligned_cols=160 Identities=9% Similarity=0.143 Sum_probs=107.6
Q ss_pred CCCCCCce-EeCCCC-eEEEEcCCeEEEEeCCC-------cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccC
Q 000707 23 SRNNFGSA-DLSPSG-LLAFASGSSISILDSRS-------LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLL 93 (1341)
Q Consensus 23 ~~~~~~a~-~~s~~g-llA~gs~~~V~v~d~~~-------~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~ 93 (1341)
|.+.+.++ +.+-.+ ++....+.+|.+|..++ ..+.-|+..|+. .|..+.|-.+.
T Consensus 734 H~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk-----------~i~~igfL~~l------ 796 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKK-----------PIHDIGFLADL------ 796 (1034)
T ss_pred cHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccC-----------cccceeeeecc------
Confidence 33344443 333334 45445678999998764 123457889998 89999888653
Q ss_pred CCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe--E
Q 000707 94 STEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS--C 171 (1341)
Q Consensus 94 s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~--~ 171 (1341)
+.+||+ ||.|.+||.--|+.+.........+ .+.-+...++-+..-++|.++...+|+++|.+.++ +
T Consensus 797 --------r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 797 --------RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred --------ceeeec--cCcceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeeccccccee
Confidence 456665 7889999987777766442222223 45555555653222345555889999999998775 4
Q ss_pred EEEEe---CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 172 MWKYD---ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 172 i~~~~---~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
-|+.. ++...+.|++..| .+++++++-..|.|.+.|...
T Consensus 866 E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 866 ELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred eEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCC
Confidence 45543 3335678999999 899999998889999988654
No 307
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.036 Score=64.30 Aligned_cols=257 Identities=19% Similarity=0.218 Sum_probs=149.3
Q ss_pred ceEeCCCC-eEEEE----c-------CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCC
Q 000707 29 SADLSPSG-LLAFA----S-------GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTE 96 (1341)
Q Consensus 29 a~~~s~~g-llA~g----s-------~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~ 96 (1341)
.+..||+| .+..+ + ...|.+||+.+.+....+..+..+.+ .........++|.|
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~----~~~~~~~~~~ls~d---------- 105 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA----QVVPYKNMFALSAD---------- 105 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B------BS--GGGEEE-TT----------
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh----eecccccceEEccC----------
Confidence 46789998 33321 1 14678999999988775554432000 00001122455554
Q ss_pred CCCCCcEEEEE--eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC-CCeEEE
Q 000707 97 PGSSHLLLAAA--DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT-SASCMW 173 (1341)
Q Consensus 97 ~~p~g~~LASg--~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~-tg~~i~ 173 (1341)
|+++... .-.-.|-|-|+..++.+.+++.+| +.+. -|.++ +-+.+..+||.+.-..++ .|+...
T Consensus 106 ----gk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~i-yP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 106 ----GKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLI-YPSGN--RGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp ----SSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEE-EEEET--TEEEEEETTSCEEEEEETSTSSEEE
T ss_pred ----CcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEE-EecCC--CceEEEecCCceEEEEECCCCCEeE
Confidence 5555544 345678999999999999886642 1122 35553 346677789999888777 565432
Q ss_pred EE--eCCC--CceE-EEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCC
Q 000707 174 KY--DASP--EYLS-CIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPA 248 (1341)
Q Consensus 174 ~~--~~~~--~~v~-~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~ 248 (1341)
+. .++. +++. .=+++. ++.++...+-+|.|+..|+++.... ..+.|.+.++ ..-+..|-.
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~--~~~~~~~~t~----~e~~~~WrP-------- 237 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAK--FGKPWSLLTD----AEKADGWRP-------- 237 (342)
T ss_dssp EEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEE--EEEEEESS-H----HHHHTTEEE--------
T ss_pred eeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCccc--ccCcccccCc----cccccCcCC--------
Confidence 21 2222 2221 112222 4557777888999999999885431 1344443111 111122311
Q ss_pred CCcCccceEEEEEccCCCceEEEEcC----------CeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCC-EEEEEe-
Q 000707 249 SGLFPLYMVKFTFSPHWRHIIFVTFP----------RELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND-LLYCAH- 316 (1341)
Q Consensus 249 ~~~~~~~v~~~afSpdg~~l~~~~~d----------~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~-~L~s~~- 316 (1341)
+.--.++|++...+|...+.. .+|.++|+++++.+..++++. +..++..+.|.+ .|++..
T Consensus 238 -----GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~---~~~Si~Vsqd~~P~L~~~~~ 309 (342)
T PF06433_consen 238 -----GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH---PIDSIAVSQDDKPLLYALSA 309 (342)
T ss_dssp ------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE---EESEEEEESSSS-EEEEEET
T ss_pred -----cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC---ccceEEEccCCCcEEEEEcC
Confidence 111124888776555555432 379999999999999998862 344666666655 787765
Q ss_pred cCCcEEEEeccCCceeeee
Q 000707 317 LDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 317 ~DgtI~lW~~~~g~~~~~~ 335 (1341)
.++.|.++|..+|+.++.+
T Consensus 310 ~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 310 GDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp TTTEEEEEETTT--EEEEE
T ss_pred CCCeEEEEeCcCCcEEeeh
Confidence 5799999999999987776
No 308
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.47 E-value=0.1 Score=58.80 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=124.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEc-CCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeE
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWL-GNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFR 606 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs-~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~ 606 (1341)
.+.++++-...|.|..||..++.... +.. ....++.+. ++++++.+... .+.+.|+.+|+...+.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~~~~G~~~~~~~g~l~v~~~~-----------~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--PGPNGMAFDRPDGRLYVADSG-----------GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EES--SSEEEEEEECTTSEEEEEETT-----------CEEEEETTTTEEEEEE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-Eec--CCCceEEEEccCCEEEEEEcC-----------ceEEEecCCCcEEEEe
Confidence 57888888889999999998876532 222 226778887 77877765432 4566699999765555
Q ss_pred Eec-cC-CCCCeEEEEECCCCCEEEEEECC--------CcEEEEeccCCCceeeecc--CceEEEEEcCCCCCCCCCCCC
Q 000707 607 VLQ-KP-ERAPIRALRASSSGRYLLILFRD--------APVEVWAMTKNPIMLRSLA--LPFTVLEWTLPTVPWPSQTGP 674 (1341)
Q Consensus 607 ~l~-~~-~~~~I~~i~~SpdG~~Las~s~D--------~~I~vWDl~~t~~~l~~l~--~~v~~l~wsp~~~~~~~~~~~ 674 (1341)
... +. .....+.+++.|+|++.++.... +.|..++. . ++...... ..-++++|+|+
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~-~-~~~~~~~~~~~~pNGi~~s~d---------- 144 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDP-D-GKVTVVADGLGFPNGIAFSPD---------- 144 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEET-T-SEEEEEEEEESSEEEEEEETT----------
T ss_pred eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECC-C-CeEEEEecCcccccceEECCc----------
Confidence 442 21 23457899999999988876644 33445554 2 33222111 12267888865
Q ss_pred CcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeE-EEEecCCcEEEEEec--CCeeeccc--CCCCCC
Q 000707 675 SRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESF-AFALANGALGVFEVH--GRRIRDFR--PKWPSS 749 (1341)
Q Consensus 675 ~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~l-a~~~~Dg~I~vwdv~--~~~v~~~~--~~~~~~ 749 (1341)
+..| ++-+..+.|..++++ +..+.... ..++
T Consensus 145 ------------------------------------------g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-- 180 (246)
T PF08450_consen 145 ------------------------------------------GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-- 180 (246)
T ss_dssp ------------------------------------------SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S--
T ss_pred ------------------------------------------chheeecccccceeEEEeccccccceeeeeeEEEcC--
Confidence 2333 344567788888884 32121100 0111
Q ss_pred ccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEc-cC
Q 000707 750 SFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFS-PV 805 (1341)
Q Consensus 750 ~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fS-P~ 805 (1341)
...+..-.|++ +|++.++.-..+.|.++|.+ |+ +..+......+++++|. |+
T Consensus 181 ---~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 181 ---GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp ---SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred ---CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 11133556777 78888887889999999998 66 55554445589999995 44
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.47 E-value=0.0058 Score=66.72 Aligned_cols=73 Identities=12% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEE--EEEeCCCCceEEEEEcC---------CCCCEEEEEeC
Q 000707 132 NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM--WKYDASPEYLSCIRRNP---------FDARHFCVLGL 200 (1341)
Q Consensus 132 h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i--~~~~~~~~~v~~~~fsP---------~d~~~la~~~~ 200 (1341)
|.+..|..+.++-+ ..|+++-.++.+...+..++.++ |..+...+++.+++.+. --+..+|.++.
T Consensus 34 ~~d~~~~~~~~v~~----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 34 HADVKLSKVSLSAE----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred ccceEEEEeechhh----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 33334555555542 56777766776666666555543 22333344455554321 02468999999
Q ss_pred CCeEEEEE
Q 000707 201 KGLLLSVR 208 (1341)
Q Consensus 201 dG~i~~~d 208 (1341)
||.+.+++
T Consensus 110 dg~~~v~s 117 (319)
T KOG4714|consen 110 DGSLAVFS 117 (319)
T ss_pred CceEEEEe
Confidence 99988865
No 310
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.47 E-value=0.054 Score=62.84 Aligned_cols=273 Identities=20% Similarity=0.226 Sum_probs=156.4
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEE----------eCCCcE
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAA----------DRHGRV 113 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg----------~~dG~I 113 (1341)
+.|.|+|..+++.+-.++.- ..-.+..||+ |+.++++ .+.-.|
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-------------~~~~~~~spd--------------gk~~y~a~T~~sR~~rG~RtDvv 69 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-------------FLGNVALSPD--------------GKTIYVAETFYSRGTRGERTDVV 69 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-------------SSEEEEE-TT--------------SSEEEEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeecc-------------cCCceeECCC--------------CCEEEEEEEEEeccccccceeEE
Confidence 47999999999887665421 2223556766 4555554 345679
Q ss_pred EEEeCCCCeEEEEecCCCC-CC---CCeeEEEEeecCCCccEEEEE--eCCCeEEEEECCCCeEEEEEeCCCCceEEEEE
Q 000707 114 ALLDFRLRSVVLWIDPDPN-PK---LGIQDLCWIVSKPDSFVLAAI--NGPSVLSLYNTTSASCMWKYDASPEYLSCIRR 187 (1341)
Q Consensus 114 ~vWDv~tg~~~~~l~~~~h-~~---~~V~~l~wsp~~~~~~lLas~--s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~f 187 (1341)
.+||..+-....+++++.. .. .....++++.++ +++... +....|.+=|+..++.+..++- ++ |.-.
T Consensus 70 ~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PG---C~~i 142 (342)
T PF06433_consen 70 EIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PG---CWLI 142 (342)
T ss_dssp EEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEG-TS---EEEE
T ss_pred EEEecCcCcccceEecCCcchheecccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecC-CC---EEEE
Confidence 9999999988888777642 11 022345666665 554443 4556888889888877766654 22 4444
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000707 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1341)
Q Consensus 188 sP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~ 267 (1341)
-|..++.|.+.|.||.+..+.+...+.. . .+.-.+ . . + ...+. +..=+++.++.+
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~-~-~~~t~~-------F------~-------~--~~dp~-f~~~~~~~~~~~ 197 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKE-A-QKSTKV-------F------D-------P--DDDPL-FEHPAYSRDGGR 197 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSE-E-EEEEEE-------S------S-------T--TTS-B--S--EEETTTTE
T ss_pred EecCCCceEEEecCCceEEEEECCCCCE-e-Eeeccc-------c------C-------C--CCccc-ccccceECCCCe
Confidence 5656688999999999988776532211 0 000000 0 0 0 00010 111156677778
Q ss_pred eEEEEcCCeEEEEEcCCCcee--EEEecCC--------CccceEEEEEcCCCCEEEEE--------ecCCcEEEE--ecc
Q 000707 268 IIFVTFPRELVVFDLQYETPL--FSAALPR--------GCAKFLDVLADPNNDLLYCA--------HLDGKLSIW--RRK 327 (1341)
Q Consensus 268 l~~~~~d~~I~iwDl~t~~~l--~~~~l~~--------~~~~~~~v~~~pdg~~L~s~--------~~DgtI~lW--~~~ 327 (1341)
+++.++.|.|+-.|+...... ..+.+-. .++....++..+..+.||.. |.|+.=.|| |.+
T Consensus 198 ~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 198 LYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp EEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred EEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECC
Confidence 888999999999998866432 2222210 01223334555666677764 345555566 567
Q ss_pred CCceeeeeecccccccccCccCCCCceEEEEEccCcchhhhhhhcccCCCCCCCCccccCCCCccccccccccccEEEEE
Q 000707 328 EGEQVHVMCTMEELIPSIGTSVPSPSILAVLVSQSESTIQNVAKLCLDAPHSPSANVDIDSPFEFSDDTLLLSKTHLISI 407 (1341)
Q Consensus 328 ~g~~~~~~~~~~~~~~~~g~~~~~~~v~a~~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~las~ 407 (1341)
+++.+..+ ..+. .+.++.+++++ .-+|...
T Consensus 278 t~krv~Ri-~l~~------------~~~Si~Vsqd~-------------------------------------~P~L~~~ 307 (342)
T PF06433_consen 278 THKRVARI-PLEH------------PIDSIAVSQDD-------------------------------------KPLLYAL 307 (342)
T ss_dssp TTEEEEEE-EEEE------------EESEEEEESSS-------------------------------------S-EEEEE
T ss_pred CCeEEEEE-eCCC------------ccceEEEccCC-------------------------------------CcEEEEE
Confidence 77766655 1111 34456666653 2256555
Q ss_pred E-cCCeEEEEEcccccccc
Q 000707 408 S-DDGKVWNWLLTAEGAGD 425 (1341)
Q Consensus 408 s-~DG~I~lWdl~~~~~~~ 425 (1341)
+ .+|.|.+||..+++..+
T Consensus 308 ~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 308 SAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp ETTTTEEEEEETTT--EEE
T ss_pred cCCCCeEEEEeCcCCcEEe
Confidence 4 58999999999987654
No 311
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.31 E-value=0.017 Score=63.43 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=109.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEE-EEeecCCCeEEEEEcCCC--cEEEEecCCcccccCcccCeEEEEEccCCceeee
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTA-SFSVHNGTVRGLRWLGNS--RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~-~l~~H~~~V~~l~fs~d~--~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1341)
-..||.|+..|...+|...+.+... .-..|...|+-+.=.-+. ++.-++ .|.++++.++.-+..+..
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s----------ndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS----------NDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc----------CCcceeEEEEecCcccce
Confidence 4588999999999999998776433 334444322211100111 222222 345778877765542221
Q ss_pred EEeccCCCC--CeEEEEECCCCCEEEEEECCCcEEEEeccCCCce-eeeccCce----EEEEEcCCCCCCCCCCCCCccc
Q 000707 606 RVLQKPERA--PIRALRASSSGRYLLILFRDAPVEVWAMTKNPIM-LRSLALPF----TVLEWTLPTVPWPSQTGPSRQS 678 (1341)
Q Consensus 606 ~~l~~~~~~--~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~-l~~l~~~v----~~l~wsp~~~~~~~~~~~~k~~ 678 (1341)
. |-. .+.++.+|+|++++++.+....|-.|.+...+.- ++....+- ....|+
T Consensus 154 -~----h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s---------------- 212 (344)
T KOG4532|consen 154 -V----HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS---------------- 212 (344)
T ss_pred -e----eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec----------------
Confidence 1 322 2789999999999999999999999988433322 22111110 011222
Q ss_pred ccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCee--ecccCCCCCCccccccc
Q 000707 679 SLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRI--RDFRPKWPSSSFISSDG 756 (1341)
Q Consensus 679 ~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v--~~~~~~~~~~~l~~~~~ 756 (1341)
...++||++..||++.|||++.... ......-| .|.|
T Consensus 213 ------------------------------------~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp-----~hnG 251 (344)
T KOG4532|consen 213 ------------------------------------ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRP-----HHNG 251 (344)
T ss_pred ------------------------------------cCcceEEEEecCCcEEEEEecccccchhhhcccCC-----CCCC
Confidence 2347899999999999999964332 11001111 4667
Q ss_pred eEEEEee--cC--CEEEEEeCCCcEEEEECCCCc
Q 000707 757 LITAMAY--RL--PHVVMGDRSGNIRWWDVTTGH 786 (1341)
Q Consensus 757 ~v~sla~--dg--~~LasGs~DgtI~lWDl~tg~ 786 (1341)
.+..+-| .| ++|.-.-.-+.+.+-|+++++
T Consensus 252 a~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 252 AFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 7766666 23 455555556778888888765
No 312
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.31 E-value=0.019 Score=62.93 Aligned_cols=198 Identities=11% Similarity=0.053 Sum_probs=119.0
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCC-ccEEEEEeCCCeEEEEECCCCeEEEEEeCC
Q 000707 100 SHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPD-SFVLAAINGPSVLSLYNTTSASCMWKYDAS 178 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~-~~lLas~s~d~~i~lWd~~tg~~i~~~~~~ 178 (1341)
..-+||.|+..|...+|...+.+....+ ...|.. .| .....--+ ..-+..++.|.++++.+++.+..-...-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~-cd~snn-~v---~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~ 157 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQ-CDVSNN-DV---TLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ 157 (344)
T ss_pred cccEEEeccccceeeeecccCcccceee-eccccc-ch---hhhhhhcccccceeeccCCcceeEEEEecCcccceeecc
Confidence 4568999999999999999876654432 122212 22 11111001 122444677999999998754322111111
Q ss_pred CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEE
Q 000707 179 PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVK 258 (1341)
Q Consensus 179 ~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~ 258 (1341)
.-.+..++++| |++.+++.|....|+.+.+....+.- .+ .+. +| ....+.+.
T Consensus 158 ~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~--~~-~~~---------------------a~--t~D~gF~~- 209 (344)
T KOG4532|consen 158 NLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYI--EN-IYE---------------------AP--TSDHGFYN- 209 (344)
T ss_pred ccceeeeEEcC-CCceEEEecCCCcceEEEeCCcccee--ee-eEe---------------------cc--cCCCceee-
Confidence 12467899999 99999999988888877543221100 00 000 11 11122344
Q ss_pred EEEccCCCceEEEEcCCeEEEEEcCCCcee-EEEe--cCCCccceEEEEEcCCCC--EEEEEecCCcEEEEeccCCce
Q 000707 259 FTFSPHWRHIIFVTFPRELVVFDLQYETPL-FSAA--LPRGCAKFLDVLADPNND--LLYCAHLDGKLSIWRRKEGEQ 331 (1341)
Q Consensus 259 ~afSpdg~~l~~~~~d~~I~iwDl~t~~~l-~~~~--l~~~~~~~~~v~~~pdg~--~L~s~~~DgtI~lW~~~~g~~ 331 (1341)
+||......|++..|+++.|||+....+. .... -+.+.+.+..+-|++-|. +|+-.-.=+.+.+-|.+++..
T Consensus 210 -S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 210 -SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred -eeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 88888889999999999999999865432 1111 123456788888887543 444333446788888887763
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.012 Score=67.95 Aligned_cols=94 Identities=18% Similarity=0.311 Sum_probs=75.2
Q ss_pred EEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEE
Q 000707 46 ISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVL 125 (1341)
Q Consensus 46 V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~ 125 (1341)
|.+.++.+++.++.|++|.. .|..++|||.. .-+|..++.+.+|+|-|+++..++.
T Consensus 175 v~~l~~~~fkssq~lp~~g~-----------~IrdlafSp~~-------------~GLl~~asl~nkiki~dlet~~~vs 230 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGS-----------FIRDLAFSPFN-------------EGLLGLASLGNKIKIMDLETSCVVS 230 (463)
T ss_pred eEEeccCCcchhhcccccch-----------hhhhhccCccc-------------cceeeeeccCceEEEEecccceeee
Confidence 55566666666777777776 89999999864 2368899999999999999988887
Q ss_pred EecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC
Q 000707 126 WIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1341)
Q Consensus 126 ~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1341)
.+. .+ + .|.++||..+. ..+|-+|...|.|-++|++..
T Consensus 231 sy~--a~-~-~~wSC~wDlde--~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 231 SYI--AY-N-QIWSCCWDLDE--RHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred hee--cc-C-CceeeeeccCC--cceeEEeccCceEEEEEccCC
Confidence 753 23 5 89999998876 489999999999999999743
No 314
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.24 E-value=0.0039 Score=68.01 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=58.7
Q ss_pred EEEEee---cCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 758 ITAMAY---RLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 758 v~sla~---dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
|.+++- ..+.+++|+.||.+.+||++... ...+..|+.+|..|-|+|..+ ..|.+++.||.+--||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p-----~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP-----EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc-----hheeEecCCCcEEEEcCCC
Confidence 666665 55688999999999999998875 345789999999999999854 5799999999999999874
No 315
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.00093 Score=75.16 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=77.4
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCc----eeeeEEe
Q 000707 533 ALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGI----NRAFRVL 608 (1341)
Q Consensus 533 AsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~----~~~l~~l 608 (1341)
++.+-+..|-|-|++||.- ..|. -++.|-++.|...+.++-. |.-.++|...|++.+. ....+ +
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~---------GcRngeI~~iDLR~rnqG~~~~a~r-l 295 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFN---------GCRNGEIFVIDLRCRNQGNGWCAQR-L 295 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEe---------cccCCcEEEEEeeecccCCCcceEE-E
Confidence 3444566788999998742 3343 4567888888876666532 3334689999998751 11222 2
Q ss_pred ccCCCCCeEEEEECC-CCCEEEEEECCCcEEEEeccCCCce---eeeccCceEEEE
Q 000707 609 QKPERAPIRALRASS-SGRYLLILFRDAPVEVWAMTKNPIM---LRSLALPFTVLE 660 (1341)
Q Consensus 609 ~~~~~~~I~~i~~Sp-dG~~Las~s~D~~I~vWDl~~t~~~---l~~l~~~v~~l~ 660 (1341)
. |.+.|+++..-. ++++|.+.+.+++|++||+ +--++ ++.+.++++..+
T Consensus 296 y--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~-R~~K~~~~V~qYeGHvN~~a 348 (425)
T KOG2695|consen 296 Y--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL-RATKCKKSVMQYEGHVNLSA 348 (425)
T ss_pred E--cCcchhhhhhhccccceEeeccCcCceeEeee-hhhhcccceeeeeccccccc
Confidence 2 778899998876 8899999999999999999 54444 566666664433
No 316
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.22 E-value=0.39 Score=60.61 Aligned_cols=140 Identities=16% Similarity=0.092 Sum_probs=91.0
Q ss_pred HHHHHHHHcCCHHHHHHHhhcC---CCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcCc
Q 000707 1116 NRVHELVSVGNLEAAVSLLLST---SPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGR 1192 (1341)
Q Consensus 1116 ~~~~~~~~lG~~~~av~lLl~~---~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g~ 1192 (1341)
.|+--|+++|.. ..+.-|... .+|+.. ..+ .++--=+.+-|+.++.-=|=-|++..+++.|+-++.++|+
T Consensus 408 ~~al~YlAl~Kk-~vL~~L~k~a~~~~~~~k-~~~-----Fl~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~ 480 (631)
T PF12234_consen 408 DCALFYLALGKK-KVLAGLWKMASWHKEQQK-MAK-----FLSNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGS 480 (631)
T ss_pred HHHHHHHHhccH-HHHHHHHHhhhcccccHH-HHH-----HHhhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhccc
Confidence 467788888865 444444332 333211 000 1222223455655544455557888999999999999999
Q ss_pred HHHHHHHhhc-cCcHHHHHHHHHhhcCCc--cHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000707 1193 YQEACSQLQD-AGCWTDAATLAATHLKGS--DYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1193 ~~~a~~~l~~-~~~w~~a~~la~~~l~~~--~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
.+|||..|.. .+...-|+.+|+..-.++ ...++|+...=-....+.+.|.+..+|-.+|...+|++.|.+
T Consensus 481 l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~ 553 (631)
T PF12234_consen 481 LKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAIKEGDRWLASWAFWMLGDYDEAIRALIS 553 (631)
T ss_pred HHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccccccCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence 9999997654 588999999999875332 122333332222222344568888888899999999999986
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0077 Score=75.34 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=133.3
Q ss_pred eEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeC
Q 000707 30 ADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1341)
Q Consensus 30 ~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1341)
+-.+|+.++.-|-...+..+|.++.+..++..--.+ .|+-++- +++.|-.|+.
T Consensus 143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-----------~v~imR~----------------Nnr~lf~G~t 195 (1118)
T KOG1275|consen 143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-----------GVTIMRY----------------NNRNLFCGDT 195 (1118)
T ss_pred hccCCcceeecchhhheeeeecccceeeeeeeccCC-----------ceEEEEe----------------cCcEEEeecc
Confidence 344555566555567788889888887776544333 5777764 3678999999
Q ss_pred CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC---------CCeEEEEECCCCeEEEEEeCCCC
Q 000707 110 HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING---------PSVLSLYNTTSASCMWKYDASPE 180 (1341)
Q Consensus 110 dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~---------d~~i~lWd~~tg~~i~~~~~~~~ 180 (1341)
.|+|.+-|..+-+.+++| ..|++ .|.++.- .| .+|++++- |..|++||++.-+.+.-+.++-+
T Consensus 196 ~G~V~LrD~~s~~~iht~--~aHs~-siSDfDv--~G---NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~ 267 (1118)
T KOG1275|consen 196 RGTVFLRDPNSFETIHTF--DAHSG-SISDFDV--QG---NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG 267 (1118)
T ss_pred cceEEeecCCcCceeeee--ecccc-ceeeeec--cC---CeEEEeecccccccccccchhhhhhhhhhhccCCcccccC
Confidence 999999999999999996 67888 7887543 33 78888763 56789999987665544444333
Q ss_pred ceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEE
Q 000707 181 YLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFT 260 (1341)
Q Consensus 181 ~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~a 260 (1341)
+ .-++|.|.=..++|+++..|...+.|..+-.. ......+.. | ....+..+.
T Consensus 268 P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-P~~~~~~v~----------------------p----~~s~i~~fD 319 (1118)
T KOG1275|consen 268 P-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-PPAGVKMVN----------------------P----NGSGISAFD 319 (1118)
T ss_pred c-hhhhhcccccceEEEEecccceeeccccccCC-CccceeEEc----------------------c----CCCcceeEE
Confidence 3 45788897788999999999999877332100 000111110 0 012477889
Q ss_pred EccCCCceEEEEcCCeEEEEE
Q 000707 261 FSPHWRHIIFVTFPRELVVFD 281 (1341)
Q Consensus 261 fSpdg~~l~~~~~d~~I~iwD 281 (1341)
+|++|.-++++-.++.|.+|-
T Consensus 320 iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 320 ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ecCCCceEEEecccCcEeeec
Confidence 999999999999999999998
No 318
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.0017 Score=73.06 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=94.2
Q ss_pred EEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCc-----eeeeccC
Q 000707 721 AFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGH-----SSQFSTH 793 (1341)
Q Consensus 721 a~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~-----~~~l~gH 793 (1341)
++.+.+-.+.+-++++..-+.+ ...+.|.++.| .+++|..|.+.|.|...|++.+. ..+.--|
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf----------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF----------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYH 297 (425)
T ss_pred ecccccceeEEEEeeccccccc----------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEc
Confidence 3445566677888865433222 11234666666 57899999999999999998751 3444558
Q ss_pred CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcc--ccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEE
Q 000707 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL--ANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAG 871 (1341)
Q Consensus 794 ~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l--~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s 871 (1341)
...|+++..--. +.++|.+.+.+|+|++||++--++- +.+. .||.-...-+-+-..+. ++ .++++|
T Consensus 298 ~Ssvtslq~Lq~-----s~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~e-----eg-~I~s~G 365 (425)
T KOG2695|consen 298 DSSVTSLQILQF-----SQQKLMASDMTGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEE-----EG-SIFSVG 365 (425)
T ss_pred Ccchhhhhhhcc-----ccceEeeccCcCceeEeeehhhhcccceeee-ecccccccccccccccc-----cc-eEEEcc
Confidence 888888764431 2267888889999999999865531 2333 57642111122223333 44 467899
Q ss_pred CCCcEEEEEccCCce
Q 000707 872 ADSSFRLIEVNTEKK 886 (1341)
Q Consensus 872 ~DgtIrvWdv~~~~~ 886 (1341)
.|.-.|+|.++.+.-
T Consensus 366 dDcytRiWsl~~ghL 380 (425)
T KOG2695|consen 366 DDCYTRIWSLDSGHL 380 (425)
T ss_pred CeeEEEEEecccCce
Confidence 999999999997643
No 319
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.99 E-value=0.0065 Score=73.70 Aligned_cols=135 Identities=20% Similarity=0.269 Sum_probs=105.2
Q ss_pred HHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHH--HHHHHHHHHHHHHccCCcchhhHHHhcCcH
Q 000707 1116 NRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLL--ELAVKVVAANMVRNDRSLSGTHLLCAVGRY 1193 (1341)
Q Consensus 1116 ~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~--~~~~k~~a~~l~~~~~~~~~v~~~~~~g~~ 1193 (1341)
+.++-....|+.-.||+|-+..+ .+..|.+|+ ..-.+|+ +..+.-+|+.||--..++.|=.+|-++..+
T Consensus 607 ka~elk~sdgd~laaiqlyika~-----~p~~a~~~a----~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~ 677 (1636)
T KOG3616|consen 607 KAAELKESDGDGLAAIQLYIKAG-----KPAKAARAA----LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF 677 (1636)
T ss_pred hhhhhccccCccHHHHHHHHHcC-----CchHHHHhh----cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH
Confidence 44555566678888888766666 344455442 2334555 466677888899888888899999999999
Q ss_pred HHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHH
Q 000707 1194 QEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALR 1261 (1341)
Q Consensus 1194 ~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~ 1261 (1341)
++|+.|+..-+-+.+|+.||+...+ +|+-.+-+.|++||..-+. +..|+..|+-++|..+|++.-.
T Consensus 678 dkale~fkkgdaf~kaielarfafp-~evv~lee~wg~hl~~~~q-~daainhfiea~~~~kaieaai 743 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARFAFP-EEVVKLEEAWGDHLEQIGQ-LDAAINHFIEANCLIKAIEAAI 743 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhCc-HHHhhHHHHHhHHHHHHHh-HHHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999983 4577899999999976553 4688888988888888877644
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.0093 Score=74.03 Aligned_cols=141 Identities=13% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCC
Q 000707 717 SESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHRE 795 (1341)
Q Consensus 717 ~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~ 795 (1341)
.+.|++|..+|.|++++..++. +. .+ .|... .-+|.++++|+.||+|.+-.+-+.+ ..++. -..
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~---~~------~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~r 113 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KT---NF------DHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKR 113 (846)
T ss_pred cceeeeccccceEEEEecCCcc-cc---cc------ccccc----ccCCceEEEecCCCcEEEeeccCCccceeEe-cCC
Confidence 4678999999999999998764 21 11 12111 2379999999999999999998876 44443 357
Q ss_pred cEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECC---CCCccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEEC
Q 000707 796 GIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD---SQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGA 872 (1341)
Q Consensus 796 ~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~---~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~ 872 (1341)
++.+|+++|+..- ..++++++|+.-| +-+..-. ... +. ..|...++|.++.|... ++|=++.
T Consensus 114 piksial~Pd~~~-~~sk~fv~GG~ag-lvL~er~wlgnk~----~v-~l~~~eG~I~~i~W~g~--------lIAWand 178 (846)
T KOG2066|consen 114 PIKSIALHPDFSR-QQSKQFVSGGMAG-LVLSERNWLGNKD----SV-VLSEGEGPIHSIKWRGN--------LIAWAND 178 (846)
T ss_pred cceeEEeccchhh-hhhhheeecCcce-EEEehhhhhcCcc----ce-eeecCccceEEEEecCc--------EEEEecC
Confidence 8999999998211 1235688887777 6555321 111 11 24555589999999864 6777776
Q ss_pred CCcEEEEEccCCceec
Q 000707 873 DSSFRLIEVNTEKKIG 888 (1341)
Q Consensus 873 DgtIrvWdv~~~~~~~ 888 (1341)
+| |||+|+.+.+.+.
T Consensus 179 ~G-v~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQRLT 193 (846)
T ss_pred CC-cEEEeccccceee
Confidence 66 6999999887655
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.014 Score=72.45 Aligned_cols=170 Identities=13% Similarity=0.212 Sum_probs=108.3
Q ss_pred CcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceee--eccCceEEEEEcC
Q 000707 586 GGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLR--SLALPFTVLEWTL 663 (1341)
Q Consensus 586 g~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~--~l~~~v~~l~wsp 663 (1341)
|..++.+.+.+.. |.. +.... |.+. ..+|.|+++|+.||+|.|-.+ -+..... .++.++.+++++|
T Consensus 55 GtH~g~v~~~~~~-~~~---~~~~~-~s~~------~~~Gey~asCS~DGkv~I~sl-~~~~~~~~~df~rpiksial~P 122 (846)
T KOG2066|consen 55 GTHRGAVYLTTCQ-GNP---KTNFD-HSSS------ILEGEYVASCSDDGKVVIGSL-FTDDEITQYDFKRPIKSIALHP 122 (846)
T ss_pred ccccceEEEEecC-Ccc---ccccc-cccc------ccCCceEEEecCCCcEEEeec-cCCccceeEecCCcceeEEecc
Confidence 5566788888763 221 11111 2221 567999999999999999988 4554443 4556778899988
Q ss_pred CCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEec--CCeeec
Q 000707 664 PTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVH--GRRIRD 741 (1341)
Q Consensus 664 ~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~--~~~v~~ 741 (1341)
+...+ ...+|++|+.-| +.++.-+ |++..
T Consensus 123 d~~~~-----------------------------------------------~sk~fv~GG~ag-lvL~er~wlgnk~~- 153 (846)
T KOG2066|consen 123 DFSRQ-----------------------------------------------QSKQFVSGGMAG-LVLSERNWLGNKDS- 153 (846)
T ss_pred chhhh-----------------------------------------------hhhheeecCcce-EEEehhhhhcCccc-
Confidence 73221 124677777777 6665432 22110
Q ss_pred ccCCCCCCccccccceEEEEeecCCEEEEEeCCCcEEEEECCCCce-eeeccCCCcEE------EEEEccCCCCCCCCCE
Q 000707 742 FRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSGNIRWWDVTTGHS-SQFSTHREGIR------RIKFSPVVPGDRSRGR 814 (1341)
Q Consensus 742 ~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~DgtI~lWDl~tg~~-~~l~gH~~~V~------~V~fSP~~~gd~~~~~ 814 (1341)
. .+-...|.|.++.|.|+++|=++.+| |+|+|+.+++. ..++-....++ .+.|.+. .+
T Consensus 154 ---v----~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-------~~ 218 (846)
T KOG2066|consen 154 ---V----VLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-------DR 218 (846)
T ss_pred ---e----eeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-------Ce
Confidence 0 11123478999999999999998888 79999999873 33322223333 3566665 56
Q ss_pred EEEEECCCeEEEEECCCC
Q 000707 815 IAVLFHDNTFSVFDLDSQ 832 (1341)
Q Consensus 815 Las~s~DgtI~IWDl~~~ 832 (1341)
|+.| +..+|+|..++.+
T Consensus 219 LVIG-W~d~v~i~~I~~~ 235 (846)
T KOG2066|consen 219 LVIG-WGDSVKICSIKKR 235 (846)
T ss_pred EEEe-cCCeEEEEEEecc
Confidence 7766 5567999998833
No 322
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.85 E-value=0.00069 Score=83.38 Aligned_cols=210 Identities=17% Similarity=0.083 Sum_probs=127.6
Q ss_pred CCCCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 25 NNFGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs~-~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
....|++||-+. .|+.|+. +-|.++++.+|+-......|.. .||-|.=|.+|. .
T Consensus 1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----------avT~vePs~dgs-------------~ 1157 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----------AVTLVEPSVDGS-------------T 1157 (1516)
T ss_pred cceeeEEeecCCceEEeeeccceEEEEEccCcccccccccccc-----------ccccccccCCcc-------------e
Confidence 346899999765 8888865 6899999999998888889987 899886555541 2
Q ss_pred EEEEEeCCC-cEEEEeCC-CCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEE-eC--
Q 000707 103 LLAAADRHG-RVALLDFR-LRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKY-DA-- 177 (1341)
Q Consensus 103 ~LASg~~dG-~I~vWDv~-tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~-~~-- 177 (1341)
.|-|++... ...+|+.. ++...+.| . .-.++.|+..-.. +.|.+.. ....|||++|+.++.++ ..
T Consensus 1158 ~Ltsss~S~PlsaLW~~~s~~~~~Hsf--~-----ed~~vkFsn~~q~-r~~gt~~--d~a~~YDvqT~~~l~tylt~~~ 1227 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASSTGGPRHSF--D-----EDKAVKFSNSLQF-RALGTEA--DDALLYDVQTCSPLQTYLTDTV 1227 (1516)
T ss_pred eeeeccccCchHHHhccccccCccccc--c-----ccceeehhhhHHH-HHhcccc--cceEEEecccCcHHHHhcCcch
Confidence 344444444 67899984 34555554 2 2345678765321 3443333 45779999999877653 21
Q ss_pred -CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccce
Q 000707 178 -SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYM 256 (1341)
Q Consensus 178 -~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v 256 (1341)
..-.-++..|+| +...+. .||. +||+.-.. . ++.| .++.. -
T Consensus 1228 ~~~y~~n~a~FsP-~D~LIl---ndGv--LWDvR~~~--a--Ih~F---------D~ft~-------------------~ 1269 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSP-CDTLIL---NDGV--LWDVRIPE--A--IHRF---------DQFTD-------------------Y 1269 (1516)
T ss_pred hhhhhccccccCC-CcceEe---eCce--eeeeccHH--H--Hhhh---------hhhee-------------------c
Confidence 111226888999 333332 2343 57764310 0 1111 11110 0
Q ss_pred EEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEE
Q 000707 257 VKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 257 ~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~ 315 (1341)
..=.|+|.|..++..+. |||+.|=..++.++- -....|.|..-|+++|..
T Consensus 1270 ~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~----Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1270 GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPS----LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred ccccccCCCceEEeech-----hhhhHHHHHHhcCcc----ccceEEEeccCccchhhh
Confidence 01179999988887764 899998877765532 123456666667766643
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.77 E-value=0.016 Score=72.62 Aligned_cols=140 Identities=14% Similarity=0.169 Sum_probs=102.2
Q ss_pred CeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeC---------CCcEEEEECCCCc-e
Q 000707 718 ESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDR---------SGNIRWWDVTTGH-S 787 (1341)
Q Consensus 718 e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~---------DgtI~lWDl~tg~-~ 787 (1341)
..+..|...|+|.+-|.+..+.. ++|..|.+.|.++...|+.|++++. |.-|+|||++.-+ +
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~i--------ht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral 259 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETI--------HTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL 259 (1118)
T ss_pred cEEEeecccceEEeecCCcCcee--------eeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhcc
Confidence 45667778999999998665432 1344688999999999999999874 6678999998754 4
Q ss_pred eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEE---CCCCCccccccccCCCCCCcEEEEEEcCCCCCCCCC
Q 000707 788 SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFD---LDSQDPLANSLLQPQFPGTLVLELDWLPTRTDKNDP 864 (1341)
Q Consensus 788 ~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWD---l~~~~~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~ 864 (1341)
..+.-|.++ .=++|.|... .++|+++..|.+.+-| +.++. +... .-|..+..+..+++++. ++
T Consensus 260 ~PI~~~~~P-~flrf~Psl~-----t~~~V~S~sGq~q~vd~~~lsNP~--~~~~-~v~p~~s~i~~fDiSsn----~~- 325 (1118)
T KOG1275|consen 260 SPIQFPYGP-QFLRFHPSLT-----TRLAVTSQSGQFQFVDTATLSNPP--AGVK-MVNPNGSGISAFDISSN----GD- 325 (1118)
T ss_pred CCcccccCc-hhhhhccccc-----ceEEEEecccceeeccccccCCCc--ccee-EEccCCCcceeEEecCC----Cc-
Confidence 445545555 5578889754 6899999999999998 43332 1122 12222345899999987 55
Q ss_pred eEEEEEECCCcEEEEE
Q 000707 865 LVLCIAGADSSFRLIE 880 (1341)
Q Consensus 865 ~~Las~s~DgtIrvWd 880 (1341)
.|+.+..+|.|-+|.
T Consensus 326 -alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 326 -ALAFGDHEGHVNLWA 340 (1118)
T ss_pred -eEEEecccCcEeeec
Confidence 789999999999998
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.69 E-value=0.48 Score=59.31 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe---------CCCeEEEEECCCCeEE
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN---------GPSVLSLYNTTSASCM 172 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s---------~d~~i~lWd~~tg~~i 172 (1341)
.++..++.+|.|.-.|.++|+.+-.+....+.. .-..+.-+|.-.+ .++..++ .++.|...|..||+.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~-~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP-PGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcC-cceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 577788889999999999999887665433200 0000111111111 2333333 3578899999999999
Q ss_pred EEEeC
Q 000707 173 WKYDA 177 (1341)
Q Consensus 173 ~~~~~ 177 (1341)
|++..
T Consensus 189 W~~~~ 193 (488)
T cd00216 189 WRFYT 193 (488)
T ss_pred eEeec
Confidence 99865
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.64 E-value=0.0015 Score=80.67 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=89.8
Q ss_pred ccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCc--EE
Q 000707 497 LQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSR--LV 574 (1341)
Q Consensus 497 l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~--ll 574 (1341)
+..|...-|+++|+. +...|++|+..|.|+++++.+|......++|.++|+-|+-+-+|. +.
T Consensus 1097 frd~~~~fTc~afs~----------------~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Lt 1160 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG----------------GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLT 1160 (1516)
T ss_pred hhccccceeeEEeec----------------CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeee
Confidence 344667789999986 457899999999999999999999999999999999999887773 34
Q ss_pred EEecCCcccccCcccCeEEEEEccC-CceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee
Q 000707 575 SFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS 651 (1341)
Q Consensus 575 S~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~ 651 (1341)
+.+++.+ -..+|++.+ +. +..++.+ -.++.||..-++-+.|....-..|||+ .++..+.+
T Consensus 1161 sss~S~P---------lsaLW~~~s~~~--~~Hsf~e-----d~~vkFsn~~q~r~~gt~~d~a~~YDv-qT~~~l~t 1221 (1516)
T KOG1832|consen 1161 SSSSSSP---------LSALWDASSTGG--PRHSFDE-----DKAVKFSNSLQFRALGTEADDALLYDV-QTCSPLQT 1221 (1516)
T ss_pred eccccCc---------hHHHhccccccC--ccccccc-----cceeehhhhHHHHHhcccccceEEEec-ccCcHHHH
Confidence 4444332 246899843 33 2222222 257889987666666766667889999 78776655
No 326
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.22 Score=62.71 Aligned_cols=204 Identities=16% Similarity=0.180 Sum_probs=123.3
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCC-eEEEEEcCC-CcEEEEecCCcccccCcccCeEEEEEccCC---c-
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGT-VRGLRWLGN-SRLVSFSYSQVNEKSGGYINRLVVTCLRSG---I- 601 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~-V~~l~fs~d-~~llS~s~d~~~~~sg~~~~~i~lwD~~tG---~- 601 (1341)
.+..+|.|+.+|.|-+.+- +-+..+.|.+|... |.-+-...+ .-++|.+-|.. | .-..+++||++.- .
T Consensus 34 ~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~----~-np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQ----G-NPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCC----C-CceEEEEecccccCCCCC
Confidence 4678999999999888874 33455788888766 444433333 25666666531 1 1126999999431 2
Q ss_pred eeee---EEec--cC-CCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeee----------ccCceEEEEEcCCC
Q 000707 602 NRAF---RVLQ--KP-ERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRS----------LALPFTVLEWTLPT 665 (1341)
Q Consensus 602 ~~~l---~~l~--~~-~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~----------l~~~v~~l~wsp~~ 665 (1341)
+.++ |... .+ ...|+..+++|.+-+.+|+|+.+|.|-.+.- ..+|. .+.++|++.+-.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G----Di~RDrgsr~~~~~~~~~pITgL~~~~d- 182 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG----DILRDRGSRQDYSHRGKEPITGLALRSD- 182 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC----cchhccccceeeeccCCCCceeeEEecC-
Confidence 2333 2221 12 4678999999999999999999999887632 22221 1135666655422
Q ss_pred CCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCC
Q 000707 666 VPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPK 745 (1341)
Q Consensus 666 ~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~ 745 (1341)
+..+.|+.....|.+|.+.|+.... ..
T Consensus 183 ---------------------------------------------------~~s~lFv~Tt~~V~~y~l~gr~p~~--~~ 209 (933)
T KOG2114|consen 183 ---------------------------------------------------GKSVLFVATTEQVMLYSLSGRTPSL--KV 209 (933)
T ss_pred ---------------------------------------------------CceeEEEEecceeEEEEecCCCcce--ee
Confidence 1222455556678889988765211 00
Q ss_pred CCCCccccccceEEEEee-cCCE-EEEEeCCCcEEEEECCCCc-eeeec-cCCCcEEEEE
Q 000707 746 WPSSSFISSDGLITAMAY-RLPH-VVMGDRSGNIRWWDVTTGH-SSQFS-THREGIRRIK 801 (1341)
Q Consensus 746 ~~~~~l~~~~~~v~sla~-dg~~-LasGs~DgtI~lWDl~tg~-~~~l~-gH~~~V~~V~ 801 (1341)
+ -.|-...+|.++ ++.. +++++ +.-|.+||..... +-+|. ||+.....+.
T Consensus 210 l-----d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~~~~ 263 (933)
T KOG2114|consen 210 L-----DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEMLVFS 263 (933)
T ss_pred e-----ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEEEEe
Confidence 1 022245778888 5544 44443 3468999997654 67776 8876555443
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.39 E-value=0.79 Score=57.40 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=43.3
Q ss_pred cCCeEEEEEcCCCceeEEEecCCCc------cceEEEEEcCCCCEEEEEecCCcEEEEeccCCceeeee
Q 000707 273 FPRELVVFDLQYETPLFSAALPRGC------AKFLDVLADPNNDLLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~------~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
.++.|.-.|+++|+.+......... .+...-...-.++.|+.++.||.|...|.++|+.++..
T Consensus 364 ~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 364 GKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 3578888999999988776653110 11110001125678999999999999999999977765
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.35 E-value=0.11 Score=63.35 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=65.5
Q ss_pred eEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeeccCc--eEEEEEcCCCCCC
Q 000707 591 RLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLALP--FTVLEWTLPTVPW 668 (1341)
Q Consensus 591 ~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~~~--v~~l~wsp~~~~~ 668 (1341)
.-.++++..++.+.+....-+..+.|.+++++|+...|+.|..||+|.+||. ..+.... .... .+-++|+|+
T Consensus 237 d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~-~~~~t~~-~ka~~~P~~iaWHp~---- 310 (545)
T PF11768_consen 237 DSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT-TRGVTLL-AKAEFIPTLIAWHPD---- 310 (545)
T ss_pred EEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc-CCCeeee-eeecccceEEEEcCC----
Confidence 3445666544433333333346678999999999999999999999999998 3442221 1222 256889875
Q ss_pred CCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCe
Q 000707 669 PSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRR 738 (1341)
Q Consensus 669 ~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~ 738 (1341)
+..|++++..|.+.+||+.-..
T Consensus 311 ------------------------------------------------gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 311 ------------------------------------------------GAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ------------------------------------------------CcEEEEEcCCceEEEEEeecCc
Confidence 3567889999999999985433
No 329
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.35 E-value=0.62 Score=52.66 Aligned_cols=199 Identities=16% Similarity=0.181 Sum_probs=108.7
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
.|..++|.|+. +.+.|..+..+.|..-|. +|+.++.+++.+.. -..+|++..++ .++++--
T Consensus 23 e~SGLTy~pd~-------------~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~--D~EgI~y~g~~---~~vl~~E 83 (248)
T PF06977_consen 23 ELSGLTYNPDT-------------GTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFG--DYEGITYLGNG---RYVLSEE 83 (248)
T ss_dssp -EEEEEEETTT-------------TEEEEEETTTTEEEEEET-T--EEEEEE-SS-S--SEEEEEE-STT---EEEEEET
T ss_pred CccccEEcCCC-------------CeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCC--CceeEEEECCC---EEEEEEc
Confidence 79999999974 567888888899888886 68999888776643 47888887654 6666555
Q ss_pred CCCeEEEEECCCCe------EEEEEe--CC---CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe
Q 000707 157 GPSVLSLYNTTSAS------CMWKYD--AS---PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ 225 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~------~i~~~~--~~---~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~ 225 (1341)
.++.+.+.++...+ ...++. .. ...+-.++|+| ...+|.++-.+.-..++.+.+... ....+..
T Consensus 84 r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~-~~~~~~~--- 158 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPG-GFDLFVS--- 158 (248)
T ss_dssp TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT--SS--EEE---
T ss_pred CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccC-ccceeec---
Confidence 58889888874221 112222 21 23477999999 556666665544444444433100 0001100
Q ss_pred cCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEEecCCCcc------
Q 000707 226 TDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCA------ 298 (1341)
Q Consensus 226 ~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~------ 298 (1341)
....+... ...-.....++|+|...+++..+ ..+.|.++| ..|+.+..+.+.++..
T Consensus 159 ----~~~~~~~~------------~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~ 221 (248)
T PF06977_consen 159 ----DDQDLDDD------------KLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDI 221 (248)
T ss_dssp ----E-HHHH-H------------T--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS--
T ss_pred ----cccccccc------------cceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCccccc
Confidence 01111100 00111245678999877777776 578899999 6688888888876432
Q ss_pred -ceEEEEEcCCCCEEEEEec
Q 000707 299 -KFLDVLADPNNDLLYCAHL 317 (1341)
Q Consensus 299 -~~~~v~~~pdg~~L~s~~~ 317 (1341)
..-.+++.++|. ||..++
T Consensus 222 ~QpEGIa~d~~G~-LYIvsE 240 (248)
T PF06977_consen 222 PQPEGIAFDPDGN-LYIVSE 240 (248)
T ss_dssp -SEEEEEE-TT---EEEEET
T ss_pred CCccEEEECCCCC-EEEEcC
Confidence 255778888774 555555
No 330
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.22 E-value=1.1 Score=54.87 Aligned_cols=71 Identities=10% Similarity=0.124 Sum_probs=57.3
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccCC
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKEG 329 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~g 329 (1341)
.+.+++++|+...++.+..|++|.+||...+....+ . ..-....+++.|+|.+++.+++-|-|.+||+.-+
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e---ecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 477889999999999999999999999988765432 1 1122345666799999999999999999998744
No 331
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.19 E-value=0.024 Score=69.05 Aligned_cols=148 Identities=17% Similarity=0.216 Sum_probs=116.2
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHH----------------HHHHHHHHHccCCcc
Q 000707 1119 HELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAV----------------KVVAANMVRNDRSLS 1182 (1341)
Q Consensus 1119 ~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~----------------k~~a~~l~~~~~~~~ 1182 (1341)
..+...||++.||...+|.+ . ..||+-.| . +..-|+.++ -.+|.+..+.|.++-
T Consensus 714 ~hl~~~~q~daainhfiea~-~-------~~kaieaa-i-~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEAN-C-------LIKAIEAA-I-GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhh-h-------HHHHHHHH-h-hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHH
Confidence 34556699999999888877 2 34442221 1 112222111 247888888999999
Q ss_pred hhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000707 1183 GTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1183 ~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
|-.+|...|..++|++.....|+|.+|..||..-..++....++-.-|..|-+.++ +.+|-.||+..|...+|++|--+
T Consensus 784 ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk-f~eaeqlyiti~~p~~aiqmydk 862 (1636)
T KOG3616|consen 784 AEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK-FAEAEQLYITIGEPDKAIQMYDK 862 (1636)
T ss_pred HHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc-hhhhhheeEEccCchHHHHHHHh
Confidence 99999999999999999999999999999998887777777777777888877665 56999999999999999999999
Q ss_pred cCCchHHHHHHHHHH
Q 000707 1263 AQHPDTAAMFVLACR 1277 (1341)
Q Consensus 1263 ~~~~~~aa~~~~~~~ 1277 (1341)
.+++|---.+++.+|
T Consensus 863 ~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKHH 877 (1636)
T ss_pred hCcchHHHHHHHHhC
Confidence 999998888888643
No 332
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.17 Score=58.69 Aligned_cols=82 Identities=18% Similarity=0.204 Sum_probs=64.3
Q ss_pred eccccCcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEE
Q 000707 496 QLQILSSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVS 575 (1341)
Q Consensus 496 ~l~g~~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS 575 (1341)
.+.++..-|..++|+|- ...++..++-+.+|+|.|+++..+...+..| ..+.+++|.-|.+-..
T Consensus 188 ~lp~~g~~IrdlafSp~---------------~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPF---------------NEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cccccchhhhhhccCcc---------------ccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCccee
Confidence 34456677889999982 3458889999999999999999999999888 7899999977664443
Q ss_pred EecCCcccccCcccCeEEEEEccCCc
Q 000707 576 FSYSQVNEKSGGYINRLVVTCLRSGI 601 (1341)
Q Consensus 576 ~s~d~~~~~sg~~~~~i~lwD~~tG~ 601 (1341)
.+ |..++.|.++|++..+
T Consensus 252 Ya--------Gl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 252 YA--------GLQNGMVLVYDMRQPE 269 (463)
T ss_pred EE--------eccCceEEEEEccCCC
Confidence 33 3346689999997644
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.03 E-value=0.0044 Score=74.87 Aligned_cols=144 Identities=16% Similarity=0.303 Sum_probs=84.7
Q ss_pred cCCcEEEEEecCC-eeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCceeeeccCCCcEEEEE
Q 000707 725 ANGALGVFEVHGR-RIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIK 801 (1341)
Q Consensus 725 ~Dg~I~vwdv~~~-~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~ 801 (1341)
.|..+.+||+... .+..-.+++.++.+ ....+++| +-++|.+|...+.+.++|++....+...-.+..|..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l----~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTL----DGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccc----cCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccce
Confidence 4677999999643 11110123322111 22457788 66788999999999999997432221122244566677
Q ss_pred EccCCCCCCCCCEEEEEECCCeEEEEE-CCCCCccccccccCCC-CCCcEEEEEEcCCCCCCCCCeEEEEEEC-CCcEEE
Q 000707 802 FSPVVPGDRSRGRIAVLFHDNTFSVFD-LDSQDPLANSLLQPQF-PGTLVLELDWLPTRTDKNDPLVLCIAGA-DSSFRL 878 (1341)
Q Consensus 802 fSP~~~gd~~~~~Las~s~DgtI~IWD-l~~~~~l~~~l~~gh~-~~~~V~~l~ws~~~~~~g~~~~Las~s~-DgtIrv 878 (1341)
..|-.+ +++++- .||.|-+|| ....+....++.+... ....+..++|+|.+ .+ .|++.+. .++|++
T Consensus 203 Vdp~~~-----nY~cs~-~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr----tg-lla~l~RdS~tIrl 271 (783)
T KOG1008|consen 203 VDPFSP-----NYFCSN-SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR----TG-LLAVLSRDSITIRL 271 (783)
T ss_pred ecCCCC-----Cceecc-ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC----cc-hhhhhccCcceEEE
Confidence 777433 467665 599999999 4443322112211111 01358999999982 23 3555554 467999
Q ss_pred EEccC
Q 000707 879 IEVNT 883 (1341)
Q Consensus 879 Wdv~~ 883 (1341)
+|+..
T Consensus 272 ydi~~ 276 (783)
T KOG1008|consen 272 YDICV 276 (783)
T ss_pred ecccc
Confidence 99864
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.02 E-value=0.68 Score=58.05 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=113.9
Q ss_pred CCeEEEEcC---CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEc--cCCCccccCC---CCCCCCCcEEEE
Q 000707 35 SGLLAFASG---SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWI--PITLRCDLLS---TEPGSSHLLLAA 106 (1341)
Q Consensus 35 ~gllA~gs~---~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~s--p~~~~~~~~s---~~~~p~g~~LAS 106 (1341)
||..+|-.+ ..|...+...+++-+.++.+.. ..+..++|- |...+-...+ .-..|+|..|..
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~----------~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNV----------QGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCc----------cCccccCccccCCccEEEeCcccccccCCCCCEeec
Confidence 565666554 4677888888877666655443 123333332 2221100000 012467776633
Q ss_pred E-eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe-----------------------------
Q 000707 107 A-DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN----------------------------- 156 (1341)
Q Consensus 107 g-~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s----------------------------- 156 (1341)
. -..+.+-+.|..+.+...++...+. -..++++|++ .++.+.+
T Consensus 210 ~~ey~~~vSvID~etmeV~~qV~Vdgn----pd~v~~spdG---k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie 282 (635)
T PRK02888 210 PKKYRSLFTAVDAETMEVAWQVMVDGN----LDNVDTDYDG---KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE 282 (635)
T ss_pred ccceeEEEEEEECccceEEEEEEeCCC----cccceECCCC---CEEEEeccCcccCcceeeeccccCceEEEEchHHHH
Confidence 3 3457788889888777666544332 2344566655 3333332
Q ss_pred -----------CCCeEEEEECCC----CeEE-EEEeCCCCceEEEEEcCCCCCEEEEEe-CCCeEEEEEecCCcccceee
Q 000707 157 -----------GPSVLSLYNTTS----ASCM-WKYDASPEYLSCIRRNPFDARHFCVLG-LKGLLLSVRVLGQKEDEVVV 219 (1341)
Q Consensus 157 -----------~d~~i~lWd~~t----g~~i-~~~~~~~~~v~~~~fsP~d~~~la~~~-~dG~i~~~d~~~~~~~~~~~ 219 (1341)
.++.|.+.|..+ +..+ ..+.- ......++++| |++++.+.+ .+..+.++|+..... -+..
T Consensus 283 a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~-~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDD-LFDG 359 (635)
T ss_pred HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhh-hhhc
Confidence 235688888877 4333 22332 45567899999 888887764 488999988754211 0000
Q ss_pred eeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCC
Q 000707 220 KELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQY 284 (1341)
Q Consensus 220 k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t 284 (1341)
| + ..+....+ .+.....|. ..+|.++|.-..+...|..|..||+++
T Consensus 360 ~-~----------~~~~~vva-----evevGlGPL---HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 K-I----------KPRDAVVA-----EPELGLGPL---HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-C----------CccceEEE-----eeccCCCcc---eEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 0 00000000 111111232 348998887555555799999999987
No 335
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.82 Score=51.28 Aligned_cols=245 Identities=17% Similarity=0.180 Sum_probs=128.5
Q ss_pred ceEeCCCC--eEEEEc--CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEE
Q 000707 29 SADLSPSG--LLAFAS--GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLL 104 (1341)
Q Consensus 29 a~~~s~~g--llA~gs--~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~L 104 (1341)
-+.++|.- -+||+- +.--.|+|+...+..+++...+++ ++---=.|| |+|.+|
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R---------HfyGHGvfs--------------~dG~~L 128 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR---------HFYGHGVFS--------------PDGRLL 128 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc---------eeecccccC--------------CCCcEE
Confidence 46777753 566764 345578888888887777655542 122222344 556777
Q ss_pred EEEeCC-----CcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeC------C------------Ce
Q 000707 105 AAADRH-----GRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAING------P------------SV 160 (1341)
Q Consensus 105 ASg~~d-----G~I~vWDv~tg-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~------d------------~~ 160 (1341)
...-.| |.|=|+|++.+ +.+.+ ++.|.- +-..+.|.+|+ ++|+.+.+ | -.
T Consensus 129 YATEndfd~~rGViGvYd~r~~fqrvgE--~~t~Gi-GpHev~lm~DG---rtlvvanGGIethpdfgR~~lNldsMePS 202 (366)
T COG3490 129 YATENDFDPNRGVIGVYDAREGFQRVGE--FSTHGI-GPHEVTLMADG---RTLVVANGGIETHPDFGRTELNLDSMEPS 202 (366)
T ss_pred EeecCCCCCCCceEEEEecccccceecc--cccCCc-CcceeEEecCC---cEEEEeCCceecccccCccccchhhcCcc
Confidence 665433 78889999855 33344 344533 56788999987 77777643 1 25
Q ss_pred EEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEE-EecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 161 LSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSV-RVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 161 i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~-d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
+.+-|..+|..+.+.+.. ....-+ .-+++..+ .||+|.+= ...+.. ++. ...+-+.+....+.-+.
T Consensus 203 lvlld~atG~liekh~Lp-~~l~~l-----SiRHld~g-~dgtvwfgcQy~G~~-~d~-ppLvg~~~~g~~l~~~~---- 269 (366)
T COG3490 203 LVLLDAATGNLIEKHTLP-ASLRQL-----SIRHLDIG-RDGTVWFGCQYRGPR-NDL-PPLVGHFRKGEPLEFLD---- 269 (366)
T ss_pred EEEEeccccchhhhccCc-hhhhhc-----ceeeeeeC-CCCcEEEEEEeeCCC-ccC-CcceeeccCCCcCcccC----
Confidence 666777778777655442 111100 11233332 34555431 111110 000 00000000000110000
Q ss_pred cccCCCCCC--CCcCccceEEEEEccCCCceEEEEc-CCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEe
Q 000707 240 AGAASLSPA--SGLFPLYMVKFTFSPHWRHIIFVTF-PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAH 316 (1341)
Q Consensus 240 ~~s~~~~p~--~~~~~~~v~~~afSpdg~~l~~~~~-d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~ 316 (1341)
.|. ......|+-+++...+-+.++..+- .+...|||.++|..+....+..- ..|+ +...-++..+
T Consensus 270 ------~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~da----aGva--~~~~gf~vss 337 (366)
T COG3490 270 ------LPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPDA----AGVA--AAKGGFAVSS 337 (366)
T ss_pred ------CCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccccc----ccce--eccCceEEec
Confidence 000 0123456777788776666666653 46788999999998765555421 1222 2333455666
Q ss_pred cCCcEEEEecc
Q 000707 317 LDGKLSIWRRK 327 (1341)
Q Consensus 317 ~DgtI~lW~~~ 327 (1341)
.+|.|+...+.
T Consensus 338 g~G~~~~~s~~ 348 (366)
T COG3490 338 GQGRIIFYSRA 348 (366)
T ss_pred CCceEEecccc
Confidence 77888766443
No 336
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.88 E-value=1.8 Score=51.47 Aligned_cols=228 Identities=13% Similarity=0.070 Sum_probs=110.2
Q ss_pred CceEeCCCC-eEEEEc----CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCc
Q 000707 28 GSADLSPSG-LLAFAS----GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHL 102 (1341)
Q Consensus 28 ~a~~~s~~g-llA~gs----~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~ 102 (1341)
.-=.|.++| .|.|++ +..+.+.|..+++..|. ..+.+. ..-...++|+ ++
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL-Tdg~g~----------~~~g~~~s~~--------------~~ 93 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL-TDGPGD----------NTFGGFLSPD--------------DR 93 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-----------TTT-EE-TT--------------SS
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC-ccCCCC----------CccceEEecC--------------CC
Confidence 345789999 555543 35788999999988774 433320 1112334444 34
Q ss_pred EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe----------------------CCCe
Q 000707 103 LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN----------------------GPSV 160 (1341)
Q Consensus 103 ~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s----------------------~d~~ 160 (1341)
.|.=-.....++--|+.+++....+..+. . -+....|+.+.+ +..++.+- ..+.
T Consensus 94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~--~-~~g~gt~v~n~d-~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~ 169 (386)
T PF14583_consen 94 ALYYVKNGRSLRRVDLDTLEERVVYEVPD--D-WKGYGTWVANSD-CTKLVGIEISREDWKPLTKWKGFREFYEARPHCR 169 (386)
T ss_dssp EEEEEETTTEEEEEETTT--EEEEEE--T--T-EEEEEEEEE-TT-SSEEEEEEEEGGG-----SHHHHHHHHHC---EE
T ss_pred eEEEEECCCeEEEEECCcCcEEEEEECCc--c-cccccceeeCCC-ccEEEEEEEeehhccCccccHHHHHHHhhCCCce
Confidence 44333344578888888887655544442 2 455578887654 34554331 1135
Q ss_pred EEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEe--C-CC-eEEEEEecCCcccceeeeeEEEecCcchhhhhhh
Q 000707 161 LSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG--L-KG-LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLER 236 (1341)
Q Consensus 161 i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~--~-dG-~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~ 236 (1341)
|.-=|+.+|+..-.+.- ..-+.-+.|+|+|+..|+.|= . +. .-++| .|.++.+....++.
T Consensus 170 i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW---------------~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 170 IFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIW---------------TINTDGSNVKKVHR 233 (386)
T ss_dssp EEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEE---------------EEETTS---EESS-
T ss_pred EEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEE---------------EEEcCCCcceeeec
Confidence 55558888875433332 456678999999998888762 2 11 11233 22233322222222
Q ss_pred hhccccCCCCCCCCcCccc-eEEEEEccCCCceEEEEc-----CCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCC
Q 000707 237 ELSAGAASLSPASGLFPLY-MVKFTFSPHWRHIIFVTF-----PRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNND 310 (1341)
Q Consensus 237 ~~~~~s~~~~p~~~~~~~~-v~~~afSpdg~~l~~~~~-----d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~ 310 (1341)
+ . +.+ +--=-|+|||..+.+.+. ++.|.-.|+++++.......+ .-..+..++||+
T Consensus 234 ~--------~------~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~ 295 (386)
T PF14583_consen 234 R--------M------EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGK 295 (386)
T ss_dssp ----------------TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSS
T ss_pred C--------C------CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCC
Confidence 1 0 011 111268999999999875 557888999998765433333 233566679999
Q ss_pred EEEEEecC
Q 000707 311 LLYCAHLD 318 (1341)
Q Consensus 311 ~L~s~~~D 318 (1341)
+++-=+.|
T Consensus 296 L~vGDG~d 303 (386)
T PF14583_consen 296 LFVGDGGD 303 (386)
T ss_dssp EEEEEE--
T ss_pred EEEecCCC
Confidence 87654444
No 337
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.82 E-value=0.031 Score=65.28 Aligned_cols=221 Identities=14% Similarity=0.090 Sum_probs=135.4
Q ss_pred CCCCCCceEeCCCCeEEEEc-CCeEEEEeCCCc---ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 23 SRNNFGSADLSPSGLLAFAS-GSSISILDSRSL---QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 23 ~~~~~~a~~~s~~gllA~gs-~~~V~v~d~~~~---~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
|++.+..+..+....+..++ ++++..|-+..- ..+..+..|-+ .|-+++-+-
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-----------~I~sl~~S~------------- 63 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-----------VILSLAVSY------------- 63 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-----------HHHhhhccc-------------
Confidence 67777777777767777776 578999976542 22333445554 455555444
Q ss_pred CCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCc-cEEEEE-eCCCeEEEEECCCCe--EEE
Q 000707 99 SSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDS-FVLAAI-NGPSVLSLYNTTSAS--CMW 173 (1341)
Q Consensus 99 p~g~~LASg~~-dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~-~lLas~-s~d~~i~lWd~~tg~--~i~ 173 (1341)
+|.++.|... |..+++.|+.+-..+.-+.+..-. ..++|.....+. ..||+. -.++.+.++|-..+- ...
T Consensus 64 -dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP----g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~ 138 (558)
T KOG0882|consen 64 -DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP----GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY 138 (558)
T ss_pred -cceeEeeccCcccceeEEEeeccchhhhcccccCC----CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce
Confidence 4688999766 999999999876554333222211 234555433222 244443 456888899965433 334
Q ss_pred EEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecC--CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCc
Q 000707 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLG--QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGL 251 (1341)
Q Consensus 174 ~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~--~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~ 251 (1341)
....|..+|.++.+.| -+..+.+.-..|.|--|...+ +-+......++. ++ .++... ..
T Consensus 139 fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K--~e-TdLy~f---------------~K 199 (558)
T KOG0882|consen 139 FKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK--HE-TDLYGF---------------PK 199 (558)
T ss_pred ecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCcccccccccc--cc-chhhcc---------------cc
Confidence 4556778999999999 777777777779998885432 001000000000 00 011000 01
Q ss_pred CccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEE
Q 000707 252 FPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSA 291 (1341)
Q Consensus 252 ~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~ 291 (1341)
......++.|+|+|..+...+.|+.|++++.++|..+..+
T Consensus 200 ~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 200 AKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 1123346799999999999999999999999999877554
No 338
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.79 E-value=7.5 Score=49.17 Aligned_cols=74 Identities=14% Similarity=0.124 Sum_probs=45.3
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC-CCeeEEEEeecCCCccEEEEEe-----CCCeEEEEECCCCeEEEE
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK-LGIQDLCWIVSKPDSFVLAAIN-----GPSVLSLYNTTSASCMWK 174 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~-~~V~~l~wsp~~~~~~lLas~s-----~d~~i~lWd~~tg~~i~~ 174 (1341)
+.++..++.||.+.--|..+|+.+-.+....+.. ..+.+ +|--.++.+++..+ .++.|...|..||+.+|+
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~ts---sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITA---APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccC---CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 3467778889999999999998876553322211 01111 11100114444322 268999999999999998
Q ss_pred EeC
Q 000707 175 YDA 177 (1341)
Q Consensus 175 ~~~ 177 (1341)
+..
T Consensus 197 ~~~ 199 (527)
T TIGR03075 197 RYT 199 (527)
T ss_pred ccC
Confidence 654
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.75 E-value=0.054 Score=67.24 Aligned_cols=139 Identities=20% Similarity=0.204 Sum_probs=109.5
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcCcHH
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQ 1194 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g~~~ 1194 (1341)
.+.++-|.+-|.+.+|.++.+++. +|-..-+-|-=|++..-++++ .+.|..++...+++.||.+||++.++.
T Consensus 1039 ~~AVmLYHkAGm~~kALelAF~tq----Qf~aL~lIa~DLd~~sDp~ll----~RcadFF~~~~qyekAV~lL~~ar~~~ 1110 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELAFRTQ----QFSALDLIAKDLDAGSDPKLL----RRCADFFENNQQYEKAVNLLCLAREFS 1110 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHHHhhc----ccHHHHHHHHhcCCCCCHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 466777777899999999888887 366665555555666666665 557899999999999999999999999
Q ss_pred HHHHHhhccC-----cHHHHHHHHH-hhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000707 1195 EACSQLQDAG-----CWTDAATLAA-THLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1195 ~a~~~l~~~~-----~w~~a~~la~-~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
+|+-.|..+| ...|-++-+| --++++++..+|+.-|+-++.-+. +-.|..=|.-+|+-.+|.+.|-+
T Consensus 1111 ~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~-Yh~AtKKfTQAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1111 GALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA-YHAATKKFTQAGDKLSAMRALLK 1183 (1416)
T ss_pred HHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc-hHHHHHHHhhhhhHHHHHHHHHh
Confidence 9999999887 3555566666 337778888999999999977664 44777788888888888888775
No 340
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.57 E-value=0.028 Score=41.52 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=32.6
Q ss_pred cceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe
Q 000707 54 LQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD 117 (1341)
Q Consensus 54 ~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWD 117 (1341)
++.+..+..|.. .|++++|.|+ +.++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~-----------~i~~~~~~~~--------------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTG-----------PVTSVAFSPD--------------GKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCC-----------ceeEEEECCC--------------CCEEEEecCCCeEEEcC
Confidence 345667778887 8999999975 36899999999999997
No 341
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.37 E-value=8.2 Score=46.74 Aligned_cols=195 Identities=14% Similarity=0.133 Sum_probs=124.5
Q ss_pred CCCc-EEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe--CCCeEEEEECCCCeEEEEE
Q 000707 99 SSHL-LLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN--GPSVLSLYNTTSASCMWKY 175 (1341)
Q Consensus 99 p~g~-~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s--~d~~i~lWd~~tg~~i~~~ 175 (1341)
+.+. ..+....++.|.+-|..+-+....... +. ....++|+|++. .+-++-. .++++.+-|..+++.+.+.
T Consensus 83 ~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~---~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~ 156 (381)
T COG3391 83 PAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GL---GPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATI 156 (381)
T ss_pred CCCCeEEEecCCCCeEEEEcCcccceeeEeee-cc---CCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEE
Confidence 3445 455555679999999877777666432 22 456789999872 3444444 3789999999988887664
Q ss_pred eCCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCcc
Q 000707 176 DASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPL 254 (1341)
Q Consensus 176 ~~~~~~v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~ 254 (1341)
.-...+ ..++++| ++..+.+. ..++.+.++|..+... .+ . +.. ..+. ....|
T Consensus 157 ~vG~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v----~~-~---~~~---~~~~-------------~~~~P- 209 (381)
T COG3391 157 PVGNTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSV----VR-G---SVG---SLVG-------------VGTGP- 209 (381)
T ss_pred ecCCCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCcce----ec-c---ccc---cccc-------------cCCCC-
Confidence 332234 7899999 78766555 4678888887544211 00 0 000 0000 00011
Q ss_pred ceEEEEEccCCCceEEEEcC---CeEEEEEcCCCceeEE-EecCCCccceEEEEEcCCCCEEEEEecC-CcEEEEeccCC
Q 000707 255 YMVKFTFSPHWRHIIFVTFP---RELVVFDLQYETPLFS-AALPRGCAKFLDVLADPNNDLLYCAHLD-GKLSIWRRKEG 329 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d---~~I~iwDl~t~~~l~~-~~l~~~~~~~~~v~~~pdg~~L~s~~~D-gtI~lW~~~~g 329 (1341)
..+.++|||..+...-.. +.+.+.|..++..... .+.... ....+..+|+|+.+|..... +++.+-|.++.
T Consensus 210 --~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 210 --AGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred --ceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCCCeEEEEeCCCC
Confidence 245899999866665544 5999999999887654 333322 34467789999999998665 88888887765
Q ss_pred c
Q 000707 330 E 330 (1341)
Q Consensus 330 ~ 330 (1341)
.
T Consensus 286 ~ 286 (381)
T COG3391 286 R 286 (381)
T ss_pred c
Confidence 4
No 342
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.083 Score=61.86 Aligned_cols=201 Identities=19% Similarity=0.231 Sum_probs=126.4
Q ss_pred cCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEcc--CCceeeeE-EeccCCCCCeEEEEECCCCCEEEEEEC-
Q 000707 558 HNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLR--SGINRAFR-VLQKPERAPIRALRASSSGRYLLILFR- 633 (1341)
Q Consensus 558 H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~--tG~~~~l~-~l~~~~~~~I~~i~~SpdG~~Las~s~- 633 (1341)
|...|+-+.-+--.-+++++. |+.++-|--. .|. .+. ..+ .|...|.+++.|-+|..+.++..
T Consensus 8 hrd~i~hv~~tka~fiiqASl----------DGh~KFWkKs~isGv--EfVKhFr-aHL~~I~sl~~S~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASL----------DGHKKFWKKSRISGV--EFVKHFR-AHLGVILSLAVSYDGWLFRSVEDP 74 (558)
T ss_pred ccceeeeEeeehhheEEeeec----------chhhhhcCCCCccce--eehhhhH-HHHHHHHhhhccccceeEeeccCc
Confidence 555565554444344555544 4467777642 222 111 112 26778999999999999999877
Q ss_pred CCcEEEEeccCCCceeeeccCce--EEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCC
Q 000707 634 DAPVEVWAMTKNPIMLRSLALPF--TVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEG 711 (1341)
Q Consensus 634 D~~I~vWDl~~t~~~l~~l~~~v--~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 711 (1341)
|..+|++|+ .+-.++.-++..+ ..++|.-.. +
T Consensus 75 Dhs~KvfDv-En~DminmiKL~~lPg~a~wv~sk---------G------------------------------------ 108 (558)
T KOG0882|consen 75 DHSVKVFDV-ENFDMINMIKLVDLPGFAEWVTSK---------G------------------------------------ 108 (558)
T ss_pred ccceeEEEe-eccchhhhcccccCCCceEEecCC---------C------------------------------------
Confidence 999999999 4544432222111 123443110 0
Q ss_pred ccCCCCCeEEEE-ecCCcEEEEEecCCeeec-ccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCC---
Q 000707 712 SQDDTSESFAFA-LANGALGVFEVHGRRIRD-FRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTT--- 784 (1341)
Q Consensus 712 s~~~~~e~la~~-~~Dg~I~vwdv~~~~v~~-~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~t--- 784 (1341)
..-.++|+. ..+|.+.++|-.+..... +..+ -|...|..+-+ -++..+|.+..|-|..|....
T Consensus 109 ---d~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk-------lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~q 178 (558)
T KOG0882|consen 109 ---DKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK-------LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQ 178 (558)
T ss_pred ---CeeeeEEeecccCCCcEEECCcCCcCccceecc-------cccCceEEEEeeccccceeeccccceeEeecCCCccc
Confidence 001233333 467888898875433211 1111 26677888877 678999999999999999873
Q ss_pred ---Cce----------eeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCC
Q 000707 785 ---GHS----------SQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQD 833 (1341)
Q Consensus 785 ---g~~----------~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~ 833 (1341)
+++ ..+.--+....++.|+|+ + ..+++...|..|+++++.+++
T Consensus 179 fPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~--g----~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 179 FPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD--G----AQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred CccccccccccccchhhcccccccCccceEEccc--c----CcccccCcccEEEEEEeccch
Confidence 111 112344678889999999 4 678888899999999999886
No 343
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.29 E-value=5.2 Score=48.56 Aligned_cols=230 Identities=16% Similarity=0.137 Sum_probs=113.7
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEE-------------------------Eec---
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVL-------------------------WID--- 128 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~-------------------------~l~--- 128 (1341)
.|+.|.|+++. .-||.|...|.|.||.+...+.-. .+.
T Consensus 3 ~v~~vs~a~~t--------------~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPET--------------LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETTT--------------TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG-
T ss_pred eEEEEEecCCC--------------ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhC
Confidence 68999999863 569999999999998763321110 000
Q ss_pred -------------CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC--------CCCceEEEEE
Q 000707 129 -------------PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA--------SPEYLSCIRR 187 (1341)
Q Consensus 129 -------------~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~--------~~~~v~~~~f 187 (1341)
+....+ +|++++-|.-| ++|.+..+|.+.|-|.+....|.+-.. ..+.++++.|
T Consensus 69 ~~~~~~gf~P~~l~~~~~g-~vtal~~S~iG----Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQG-PVTALKNSDIG----FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp -TT-SEEEEEEEEE---S--SEEEEEE-BTS----EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEE
T ss_pred CcccccccCchhheeccCC-cEeEEecCCCc----EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEE
Confidence 111234 89999987554 899999999999999987777766321 1335677777
Q ss_pred cC-------CCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEe-cCcchhhhhhhhhccccCCCCCCCCcCccceEEE
Q 000707 188 NP-------FDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQ-TDCTELLKLERELSAGAASLSPASGLFPLYMVKF 259 (1341)
Q Consensus 188 sP-------~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~-~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~ 259 (1341)
.. +.+-.+.++...|.+..+.+.+........+-.... ...+....+.- ++..+|.+..+.. ..+..+
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~-i~~~~G~~a~At~---~~~~~l 219 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP-INADTGESALATI---SAMQGL 219 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE-EETTT--B-B-BH---HHHHGG
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE-EECCCCCcccCch---hHhhcc
Confidence 42 222466777888999999876422211111111100 00000000000 0000000000000 000000
Q ss_pred EEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCc-cceEEEEE---cCCCCEEEEEecCCcEEEEeccCCc
Q 000707 260 TFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGC-AKFLDVLA---DPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 260 afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~-~~~~~v~~---~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
.=...-..++.+..++.|+|+.+.+.+..+..- ..+. .....++. ...+-.|+|...||.|++.....-+
T Consensus 220 ~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 220 SKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp GGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 000001346677788999999999887765443 2110 11112221 1246689999999999999886543
No 344
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.057 Score=65.85 Aligned_cols=92 Identities=25% Similarity=0.266 Sum_probs=70.8
Q ss_pred CCCCceEeCCCC-eEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEE-EEEEccCCCccccCCCCCCCCC
Q 000707 25 NNFGSADLSPSG-LLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVT-AVKWIPITLRCDLLSTEPGSSH 101 (1341)
Q Consensus 25 ~~~~a~~~s~~g-llA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt-~v~~sp~~~~~~~~s~~~~p~g 101 (1341)
.++--+.|+|.- |||++. .+.|.+.... .|.+-+++-|.. .|+ +++|-|| |
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~-----------~v~~sL~W~~D--------------G 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGE-----------NVTASLCWRPD--------------G 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCC-----------ccceeeeecCC--------------C
Confidence 356679999985 999984 5678888776 788888988877 777 9999976 6
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEee
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIV 144 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp 144 (1341)
.+||.|-.||+|+|-|+.+|..+..+.. .-.. .|..+-|.+
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~~-s~e~-~is~~~w~~ 115 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFLF-SVET-DISKGIWDR 115 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceecccc-cccc-chheeeccc
Confidence 8999999999999999999987766311 1112 566666653
No 345
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.11 E-value=10 Score=45.38 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCCcEEEEE---------eCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCC
Q 000707 99 SSHLLLAAA---------DRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSA 169 (1341)
Q Consensus 99 p~g~~LASg---------~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg 169 (1341)
||+++++-. +..+.+-|+|+.+++..... .. .. .+....|+|++ +.||-.. ++.|.+++..++
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~--~~-~~-~~~~~~~sP~g---~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT--PP-PP-KLQDAKWSPDG---KYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS---E-ET-TBSEEEE-SSS---TEEEEEE-TTEEEEESSTTS
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc--CC-cc-ccccceeecCC---CeeEEEe-cCceEEEECCCC
Confidence 456666553 23467999999998766542 11 24 78999999997 6777665 678999998777
Q ss_pred e
Q 000707 170 S 170 (1341)
Q Consensus 170 ~ 170 (1341)
.
T Consensus 74 ~ 74 (353)
T PF00930_consen 74 Q 74 (353)
T ss_dssp E
T ss_pred C
Confidence 4
No 346
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.11 E-value=5.3 Score=48.88 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=41.9
Q ss_pred ceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCC
Q 000707 255 YMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1341)
Q Consensus 255 ~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1341)
.+..|++||+|+.++....++.+.|.+..-.+.+..+.+.. .....++.+|-+
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~-~~~p~~~~WCG~ 270 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDS-KSPPKQMAWCGN 270 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCc-CCCCcEEEEECC
Confidence 47889999999999999999999999988887777776552 234556777754
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.10 E-value=7.1 Score=43.50 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=86.2
Q ss_pred eEEEEcCCe-EEEEeCCCcceeE--eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcE
Q 000707 37 LLAFASGSS-ISILDSRSLQLIS--TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRV 113 (1341)
Q Consensus 37 llA~gs~~~-V~v~d~~~~~~~~--~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I 113 (1341)
++..|+++. +.-.|+.+|.++- .|.+ +|.+-+.- -|.+++-|...|.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~--------------RiE~sa~v---------------vgdfVV~GCy~g~l 75 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGV--------------RIECSAIV---------------VGDFVVLGCYSGGL 75 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCc--------------eeeeeeEE---------------ECCEEEEEEccCcE
Confidence 566688764 4568999988753 2222 22222111 15679999999999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCC
Q 000707 114 ALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDAR 193 (1341)
Q Consensus 114 ~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~ 193 (1341)
.+-++.+|.....|...+.- .++.. ..+++ .++-.++.|+++..-|..+..++|+..-+.....+=+.+|-|+.
T Consensus 76 Yfl~~~tGs~~w~f~~~~~v--k~~a~-~d~~~---glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 76 YFLCVKTGSQIWNFVILETV--KVRAQ-CDFDG---GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS 149 (354)
T ss_pred EEEEecchhheeeeeehhhh--ccceE-EcCCC---ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce
Confidence 99999999776665433221 22221 22333 78888999999999999999999986654444444456664444
Q ss_pred EEEEEeCCCeEEEE
Q 000707 194 HFCVLGLKGLLLSV 207 (1341)
Q Consensus 194 ~la~~~~dG~i~~~ 207 (1341)
..++ ...|.++..
T Consensus 150 ly~a-~t~G~vlav 162 (354)
T KOG4649|consen 150 LYAA-ITAGAVLAV 162 (354)
T ss_pred EEEE-eccceEEEE
Confidence 4444 344666654
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.09 E-value=0.5 Score=57.74 Aligned_cols=137 Identities=12% Similarity=0.112 Sum_probs=80.7
Q ss_pred CcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE--ECCCCeEEEEEeCCCCceEEEEEc
Q 000707 111 GRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY--NTTSASCMWKYDASPEYLSCIRRN 188 (1341)
Q Consensus 111 G~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW--d~~tg~~i~~~~~~~~~v~~~~fs 188 (1341)
..|.++|+.+|+....+...++.. .-+|+||+ .+++.+...|+...|| |+.+++ +.+++.....-..=.|+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~----~P~fspDG--~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~s 290 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNG----APAFSPDG--SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWS 290 (425)
T ss_pred ceEEEEeccCCccceeeccCCccC----CccCCCCC--CEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCC
Confidence 469999999987766655555433 45799988 3666677777755555 776555 44444423322344678
Q ss_pred CCCCCEEEEEeCC-C--eEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 189 PFDARHFCVLGLK-G--LLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 189 P~d~~~la~~~~d-G--~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
| |++.++..+.. | .|+..+..+... .++... . ..... -..||||
T Consensus 291 p-dG~~ivf~Sdr~G~p~I~~~~~~g~~~-----------------~riT~~--~-------~~~~~------p~~SpdG 337 (425)
T COG0823 291 P-DGSKIVFTSDRGGRPQIYLYDLEGSQV-----------------TRLTFS--G-------GGNSN------PVWSPDG 337 (425)
T ss_pred C-CCCEEEEEeCCCCCcceEEECCCCCce-----------------eEeecc--C-------CCCcC------ccCCCCC
Confidence 8 99999888653 3 344433322110 011000 0 00001 1679999
Q ss_pred CceEEEEcC-C--eEEEEEcCCCce
Q 000707 266 RHIIFVTFP-R--ELVVFDLQYETP 287 (1341)
Q Consensus 266 ~~l~~~~~d-~--~I~iwDl~t~~~ 287 (1341)
+.+++.+.. + .|.+.|+.++..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCCc
Confidence 999999854 3 377777776653
No 349
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.07 E-value=0.81 Score=57.98 Aligned_cols=192 Identities=14% Similarity=0.187 Sum_probs=111.2
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCC-eeEEEEeecCCCccEEEEEeCCC-----eEEEEECCC---C
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLG-IQDLCWIVSKPDSFVLAAINGPS-----VLSLYNTTS---A 169 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~-V~~l~wsp~~~~~~lLas~s~d~-----~i~lWd~~t---g 169 (1341)
+++..+|-|+.+|.|-+.+-. -+.++.| +.+.. . |+.| |.-++ ..+|++.+.|. .|++||+.. +
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-~~~~~~f--qa~~~-siv~~L-~~~~~--~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-FQLIRGF--QAYEQ-SIVQFL-YILNK--QNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred CCCceEEEeeccccEEEeccc-ceeeehh--eecch-hhhhHh-hcccC--ceEEEEEeecCCCCceEEEEecccccCCC
Confidence 346789999999998887742 2333443 44444 4 4433 33332 26888877653 699999762 2
Q ss_pred ---eEE---EEE--eCC--CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhc
Q 000707 170 ---SCM---WKY--DAS--PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELS 239 (1341)
Q Consensus 170 ---~~i---~~~--~~~--~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~ 239 (1341)
.++ ..+ ..+ +.++.+++.+- |-..+|.|-.+|.|.++. |+.. ..+...+ ...
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~--GDi~---RDrgsr~--------~~~---- 167 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYK--GDIL---RDRGSRQ--------DYS---- 167 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEc--Ccch---hccccce--------eee----
Confidence 233 111 222 45778899988 778888888899998863 2111 0111000 000
Q ss_pred cccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCC
Q 000707 240 AGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1341)
Q Consensus 240 ~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1341)
......|..++|--|++.++++++...|.+|.+. |+......+..++.+..-..+++....++|++..
T Consensus 168 ----------~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~-gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e- 235 (933)
T KOG2114|consen 168 ----------HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS-GRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE- 235 (933)
T ss_pred ----------ccCCCCceeeEEecCCceeEEEEecceeEEEEec-CCCcceeeeccCCccceeeecCCCCccEEEecCc-
Confidence 0111237788999999998999999999999999 5442222233333444334444433335555432
Q ss_pred cEEEEecc
Q 000707 320 KLSIWRRK 327 (1341)
Q Consensus 320 tI~lW~~~ 327 (1341)
.|.+++..
T Consensus 236 ~l~fY~sd 243 (933)
T KOG2114|consen 236 FLYFYDSD 243 (933)
T ss_pred eEEEEcCC
Confidence 45555544
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=3 Score=51.36 Aligned_cols=115 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhhHHHhcCcHHHHHH
Q 000707 1119 HELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACS 1198 (1341)
Q Consensus 1119 ~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~~ 1198 (1341)
+-+|.+|+++.|.+.+-+.+ + ++.|++ +|... +..|+++-|-.
T Consensus 326 eLAl~lg~L~~A~~~a~~~~-~-------------------~~~W~~----Lg~~A-------------L~~g~~~lAe~ 368 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD-D-------------------PEKWKQ----LGDEA-------------LRQGNIELAEE 368 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS-T-------------------HHHHHH----HHHHH-------------HHTTBHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC-c-------------------HHHHHH----HHHHH-------------HHcCCHHHHHH
Confidence 77899999999999998887 2 335554 34433 34466666777
Q ss_pred HhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHHH
Q 000707 1199 QLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTAAMFVLA 1275 (1341)
Q Consensus 1199 ~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~~~~~~~aa~~~~~ 1275 (1341)
++|..+.|..-+.|....= + .+-|++.++--...+. .--|..+++-+|+..+-+++|.+.+++-+||+|...
T Consensus 369 c~~k~~d~~~L~lLy~~~g--~--~~~L~kl~~~a~~~~~-~n~af~~~~~lgd~~~cv~lL~~~~~~~~A~~~A~t 440 (443)
T PF04053_consen 369 CYQKAKDFSGLLLLYSSTG--D--REKLSKLAKIAEERGD-INIAFQAALLLGDVEECVDLLIETGRLPEAALFART 440 (443)
T ss_dssp HHHHCT-HHHHHHHHHHCT-----HHHHHHHHHHHHHTT--HHHHHHHHHHHT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHhhcCccccHHHHHHhC--C--HHHHHHHHHHHHHccC-HHHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHh
Confidence 7777788888887776653 2 4566666655433332 335777888899999999999999999999999764
No 351
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.01 E-value=0.015 Score=70.38 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=98.5
Q ss_pred CCCceEeCCCC---eEEEEc-CCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCC
Q 000707 26 NFGSADLSPSG---LLAFAS-GSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1341)
Q Consensus 26 ~~~a~~~s~~g---llA~gs-~~~V~v~d~~~~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1341)
++.|++|+-+. ++|.|. .+.|.+-..+... ---+.++|.. .-|+++|.+-
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar-----------~Ct~lAwneL------------- 113 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYAR-----------PCTSLAWNEL------------- 113 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccc-----------cccccccccc-------------
Confidence 45677776542 677774 3566555443211 1123445554 7889999975
Q ss_pred CCcEEEEE----eCCCcEEEEeCCCC--eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE
Q 000707 100 SHLLLAAA----DRHGRVALLDFRLR--SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1341)
Q Consensus 100 ~g~~LASg----~~dG~I~vWDv~tg--~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1341)
|...||.| ..|-.+.|||+.++ .+.....+.+....+...+||..+. ++|.+|.....+.+.|++- .+..
T Consensus 114 Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~---klvlaGm~sr~~~ifdlRq-s~~~ 189 (783)
T KOG1008|consen 114 DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT---KLVLAGMTSRSVHIFDLRQ-SLDS 189 (783)
T ss_pred cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCc---chhhcccccchhhhhhhhh-hhhh
Confidence 23567776 34667999999887 2221111122122267789998665 7888888888999999861 1122
Q ss_pred EEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEe
Q 000707 174 KYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRV 209 (1341)
Q Consensus 174 ~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~ 209 (1341)
.....+..+..+..+||.+.++|.-. ||.|-+||.
T Consensus 190 ~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 190 VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhhhhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 22222445677889999999999987 899999983
No 352
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.94 E-value=7.7 Score=44.34 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE-----
Q 000707 100 SHLLLAAADRHGRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW----- 173 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~----- 173 (1341)
.+.+|+.|..+| +.+++.... ....... .. +|..|...++- ++|++.+ |+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~----~~-~I~ql~vl~~~---~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK----LS-SITQLSVLPEL---NLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee----cc-eEEEEEEeccc---CEEEEEc-CCccEEEEchhhccccccccc
Confidence 578899999888 889998333 3333321 23 69999999876 5676665 5999999986433222
Q ss_pred ----------EEeCCCCceEEEE-EcCC-CCCEEEEEeCCCeEEEEEecC
Q 000707 174 ----------KYDASPEYLSCIR-RNPF-DARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 174 ----------~~~~~~~~v~~~~-fsP~-d~~~la~~~~dG~i~~~d~~~ 211 (1341)
.... ...+..++ -... ..++|+++-. ..|+++.+..
T Consensus 76 ~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~ 123 (275)
T PF00780_consen 76 AFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWND 123 (275)
T ss_pred cccccccccccccc-cCCeeEEeeccccccceEEEEEEC-CEEEEEEEEC
Confidence 1111 23344444 2222 3445555544 4777776654
No 353
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.86 E-value=13 Score=45.29 Aligned_cols=102 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred ceEeCCCC-eEEEEcCCeEEE----EeC-----CCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCC
Q 000707 29 SADLSPSG-LLAFASGSSISI----LDS-----RSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPG 98 (1341)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v----~d~-----~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~ 98 (1341)
.+..+|+| +||.|.++.++| |+. ..++......+.-. +.....||++.|-|-..... ..-.
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~------~~~~e~ITsi~clpl~s~~~---s~~~ 76 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLD------DEPGECITSILCLPLSSQKR---STGG 76 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeecc------CCCCCEEEEEEEEEeecccc---cCCC
Confidence 57888998 899887765544 433 12222222222111 00113899999988643321 1124
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEe
Q 000707 99 SSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWI 143 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~ws 143 (1341)
++...+|.|-.+|.|+++.- +|..+..- .-|.. +|..|..-
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q--~~h~~-pV~~ik~~ 117 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQ--LLHEE-PVLKIKCR 117 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHH--hcCcc-ceEEEEec
Confidence 67889999999999999995 67655432 23455 78777764
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.74 E-value=5.9 Score=44.88 Aligned_cols=211 Identities=17% Similarity=0.208 Sum_probs=105.3
Q ss_pred cccCCCCCCCCCCceEeCCC-C-eEEEEcC-CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCcccc
Q 000707 16 FMLPGPPSRNNFGSADLSPS-G-LLAFASG-SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDL 92 (1341)
Q Consensus 16 ~~lpg~~~~~~~~a~~~s~~-g-llA~gs~-~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~ 92 (1341)
..|||-. +++..+.|+|+ + |+|.... ..|+..+. +|+++..++.... ...-.|++.-+
T Consensus 15 ~~l~g~~--~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----------~D~EgI~y~g~------ 75 (248)
T PF06977_consen 15 KPLPGIL--DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----------GDYEGITYLGN------ 75 (248)
T ss_dssp EE-TT----S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----------SSEEEEEE-ST------
T ss_pred eECCCcc--CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----------CCceeEEEECC------
Confidence 4678854 46899999997 5 5555543 57777775 5888776554331 15777887643
Q ss_pred CCCCCCCCCcEEEEEeCCCcEEEEeCCCC------eEEEEec--CCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEE
Q 000707 93 LSTEPGSSHLLLAAADRHGRVALLDFRLR------SVVLWID--PDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLY 164 (1341)
Q Consensus 93 ~s~~~~p~g~~LASg~~dG~I~vWDv~tg------~~~~~l~--~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lW 164 (1341)
+.++++--+++++.+.++... .....+. .....+.++.+|+|.|.++ ++++ +-......|+
T Consensus 76 --------~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~--~L~v-~kE~~P~~l~ 144 (248)
T PF06977_consen 76 --------GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN--RLFV-AKERKPKRLY 144 (248)
T ss_dssp --------TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT--EEEE-EEESSSEEEE
T ss_pred --------CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC--EEEE-EeCCCChhhE
Confidence 566666667899988888321 1122222 2311222799999999762 4554 4445555555
Q ss_pred ECCC---CeEEEEE-----e---CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhh
Q 000707 165 NTTS---ASCMWKY-----D---ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLK 233 (1341)
Q Consensus 165 d~~t---g~~i~~~-----~---~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~ 233 (1341)
.+.. +..+... . .....++.++++|-.++.++.......++.+|..|+. .+.+.+..+ .+-
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~-----~~~~~L~~g---~~g 216 (248)
T PF06977_consen 145 EVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRV-----VSSLSLDRG---FHG 216 (248)
T ss_dssp EEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--E-----EEEEE-STT---GGG
T ss_pred EEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCE-----EEEEEeCCc---ccC
Confidence 5542 2221111 1 1134578999999666666666667788887755431 122221100 000
Q ss_pred hhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEE
Q 000707 234 LERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVF 280 (1341)
Q Consensus 234 l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iw 280 (1341)
+.+. . ..--.++|.++| +|..++.++-..+|
T Consensus 217 l~~~--------------~-~QpEGIa~d~~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 217 LSKD--------------I-PQPEGIAFDPDG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp -SS------------------SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred cccc--------------c-CCccEEEECCCC-CEEEEcCCceEEEe
Confidence 1000 0 012356999998 67777788877665
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.70 E-value=2.3 Score=50.05 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=99.8
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeC----------CCcE
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR----------HGRV 113 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~----------dG~I 113 (1341)
++|.|.|+.+.+.+.+++.... ..|++++...-... ....-.+|+.|.. .|+|
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~----------E~~~s~~~~~l~~~-------~~~~~~~ivVGT~~~~~~~~~~~~Gri 64 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN----------EHVTSLCSVKLKGD-------STGKKEYIVVGTAFNYGEDPEPSSGRI 64 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT----------EEEEEEEEEEETTS----------SSEEEEEEEEE--TTSSS-S-EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC----------ceEEEEEEEEEcCc-------cccccCEEEEEecccccccccccCcEE
Confidence 5799999999998876654443 25665544331100 0011367777742 2999
Q ss_pred EEEeCCCC----eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCC--CCceEEEEE
Q 000707 114 ALLDFRLR----SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS--PEYLSCIRR 187 (1341)
Q Consensus 114 ~vWDv~tg----~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~--~~~v~~~~f 187 (1341)
.+.++... ..+..+......+ +|.+|+-. .+ .++++. .+.|.+|+....+.+...... +-.+.++..
T Consensus 65 ~v~~i~~~~~~~~~l~~i~~~~~~g-~V~ai~~~-~~---~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 65 LVFEISESPENNFKLKLIHSTEVKG-PVTAICSF-NG---RLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEECSS-----EEEEEEEEEESS--EEEEEEE-TT---EEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred EEEEEEcccccceEEEEEEEEeecC-cceEhhhh-CC---EEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 99999884 1222111112235 89998765 22 544444 378999998876622222221 224444444
Q ss_pred cCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCc
Q 000707 188 NPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRH 267 (1341)
Q Consensus 188 sP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~ 267 (1341)
. +..++++.....+.++.+... .+++. .+.+ ...+.++.++.|-+|+..
T Consensus 138 ~---~~~I~vgD~~~sv~~~~~~~~------~~~l~---------~va~-------------d~~~~~v~~~~~l~d~~~ 186 (321)
T PF03178_consen 138 F---KNYILVGDAMKSVSLLRYDEE------NNKLI---------LVAR-------------DYQPRWVTAAEFLVDEDT 186 (321)
T ss_dssp E---TTEEEEEESSSSEEEEEEETT------TE-EE---------EEEE-------------ESS-BEEEEEEEE-SSSE
T ss_pred c---ccEEEEEEcccCEEEEEEEcc------CCEEE---------EEEe-------------cCCCccEEEEEEecCCcE
Confidence 3 347777765555555433221 01111 0111 012446788899878777
Q ss_pred eEEEEcCCeEEEEEcC
Q 000707 268 IIFVTFPRELVVFDLQ 283 (1341)
Q Consensus 268 l~~~~~d~~I~iwDl~ 283 (1341)
++.+-.++.|.++...
T Consensus 187 ~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 187 IIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEETTSEEEEEEE-
T ss_pred EEEEcCCCeEEEEEEC
Confidence 7777788999998886
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.61 E-value=0.085 Score=38.74 Aligned_cols=30 Identities=23% Similarity=0.594 Sum_probs=28.0
Q ss_pred CCCCeEEEEECCCCCEEEEEECCCcEEEEe
Q 000707 612 ERAPIRALRASSSGRYLLILFRDAPVEVWA 641 (1341)
Q Consensus 612 ~~~~I~~i~~SpdG~~Las~s~D~~I~vWD 641 (1341)
|...|.++.|+++++++++++.|+.+++||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 667899999999999999999999999996
No 357
>PRK02888 nitrous-oxide reductase; Validated
Probab=94.53 E-value=4.8 Score=50.77 Aligned_cols=220 Identities=15% Similarity=0.092 Sum_probs=117.0
Q ss_pred CCCCCCcEEEEEeC-CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEe--ec--------------CCCccEE-EEEeC
Q 000707 96 EPGSSHLLLAAADR-HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWI--VS--------------KPDSFVL-AAING 157 (1341)
Q Consensus 96 ~~~p~g~~LASg~~-dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~ws--p~--------------~~~~~lL-as~s~ 157 (1341)
+-.-||++|..-+. +.+|..-|...-++-..++++- .. .+.+++|- |. .+|++.| ...-.
T Consensus 136 ~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn-~~-~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey 213 (635)
T PRK02888 136 DGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPN-VQ-GIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKY 213 (635)
T ss_pred CCccceeEEEEecCCCcceEEEECccEeeceeEeCCC-cc-CccccCccccCCccEEEeCcccccccCCCCCEeecccce
Confidence 44568999998885 6777777776665544443321 12 34444443 21 1112222 11222
Q ss_pred CCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEe---CCC-eEEE-----------EEecCCcccceeeeeE
Q 000707 158 PSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLG---LKG-LLLS-----------VRVLGQKEDEVVVKEL 222 (1341)
Q Consensus 158 d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~---~dG-~i~~-----------~d~~~~~~~~~~~k~~ 222 (1341)
.+.+.+.|+.+-+..|+..- .....-++++| |+..+.+.+ ..| .+.. ++......-...+|..
T Consensus 214 ~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 214 RSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 35677788888888887654 23445678899 888877765 222 2222 1111000000000000
Q ss_pred EEecCcchhhhhhhhhcccc----CCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCce----------
Q 000707 223 QIQTDCTELLKLERELSAGA----ASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETP---------- 287 (1341)
Q Consensus 223 ~i~~~~~~l~~l~~~~~~~s----~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~---------- 287 (1341)
.+. + +++. .++... +..-...-..+.....|.+||||++++.++ .+.+|.|.|+++.+.
T Consensus 292 ~V~-g----n~V~-VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 292 TIG-G----SKVP-VVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred EEC-C----CEEE-EEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 000 0 0000 011110 000000000111233579999999988877 589999999998652
Q ss_pred --eEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEeccC
Q 000707 288 --LFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRKE 328 (1341)
Q Consensus 288 --l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~~ 328 (1341)
...+.+. -..+...|.++|....|...|.-|-.|++.+
T Consensus 366 ~vvaevevG---lGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPELG---LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeeccC---CCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 4444432 2345567788898888899999999999754
No 358
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=94.18 E-value=0.9 Score=44.45 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=56.9
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
..-|++||.|..||||+-+ .++.++..+ ..|..|.-...++++-+-.++ ..|.|+...++|-+.+..
T Consensus 15 ~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NG---TVGvY~~~~RlWRiKSK~------- 81 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANG---TVGVYDRSQRLWRIKSKN------- 81 (111)
T ss_pred cceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCC---EEEEEeCcceeeeeccCC-------
Confidence 4578899999999999854 566666544 567777777777765433332 235566666677654322
Q ss_pred ccCCCCCeEEEEE-CC--CC-CEEEEEECCCcEEE
Q 000707 609 QKPERAPIRALRA-SS--SG-RYLLILFRDAPVEV 639 (1341)
Q Consensus 609 ~~~~~~~I~~i~~-Sp--dG-~~Las~s~D~~I~v 639 (1341)
.+.++.+ .. || .-|++|-.+|.|++
T Consensus 82 ------~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 82 ------QVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ------CeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 1333333 22 33 35777877777653
No 359
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.13 E-value=2.6 Score=53.79 Aligned_cols=97 Identities=11% Similarity=0.084 Sum_probs=53.7
Q ss_pred CCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECC-----
Q 000707 560 GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVLQKPERAPIRALRASSSGRYLLILFRD----- 634 (1341)
Q Consensus 560 ~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D----- 634 (1341)
..+.+.+++++|..+.+...... ....+...|++.+. .|..+++. .+ . ..+.-.|+|||+.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~-~~~d~~s~Lwv~~~-gg~~~~lt--~g-~--~~t~PsWspDG~~lw~v~dg~~~~~ 422 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGR-GAPDPASSLWVGPL-GGVAVQVL--EG-H--SLTRPSWSLDADAVWVVVDGNTVVR 422 (591)
T ss_pred cCcccceECCCCCEEEEEEeecC-CCCCcceEEEEEeC-CCcceeee--cC-C--CCCCceECCCCCceEEEecCcceEE
Confidence 46778899999976655442111 11223456777775 34433432 23 1 25677899999988777533
Q ss_pred -----CcEEEE--eccCCCceeeeccCceEEEEEcCC
Q 000707 635 -----APVEVW--AMTKNPIMLRSLALPFTVLEWTLP 664 (1341)
Q Consensus 635 -----~~I~vW--Dl~~t~~~l~~l~~~v~~l~wsp~ 664 (1341)
+.-++| ++ ..+...+.++..+..+.|||+
T Consensus 423 v~~~~~~gql~~~~v-d~ge~~~~~~g~Issl~wSpD 458 (591)
T PRK13616 423 VIRDPATGQLARTPV-DASAVASRVPGPISELQLSRD 458 (591)
T ss_pred EeccCCCceEEEEec-cCchhhhccCCCcCeEEECCC
Confidence 112233 33 233222233445777888876
No 360
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.00 E-value=5.4 Score=47.70 Aligned_cols=251 Identities=16% Similarity=0.137 Sum_probs=119.6
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEEEeCCCcceeE-eecCCCCCCCCCCCCC-----CCcEEEEEEccCCCccccCCCC--
Q 000707 26 NFGSADLSPSG-LLAFASGSSISILDSRSLQLIS-TIPIPPPTSAGSVASL-----SPFVTAVKWIPITLRCDLLSTE-- 96 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v~d~~~~~~~~-~l~~H~~~~~~~~~~~-----~~~Vt~v~~sp~~~~~~~~s~~-- 96 (1341)
....+.|||+| .|||..++.|.+++..+++..+ |..|-.....|--+.. -..-.++-||||+........+
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 46689999999 9999999999999988776543 3334110000000000 0012468899997642222110
Q ss_pred ---------CCCCCc---EEE------EEeCCCc--EEEEeCCCCeEEEEecCC----CCCCCCeeEEEEeecCCCcc-E
Q 000707 97 ---------PGSSHL---LLA------AADRHGR--VALLDFRLRSVVLWIDPD----PNPKLGIQDLCWIVSKPDSF-V 151 (1341)
Q Consensus 97 ---------~~p~g~---~LA------Sg~~dG~--I~vWDv~tg~~~~~l~~~----~h~~~~V~~l~wsp~~~~~~-l 151 (1341)
..+.+. .+. .|+.+-. +.|+|+.+++.. ++... .... -+..+.|++++ . +
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~-yl~~v~W~~d~---~~l 198 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDY-YLTRVGWSPDG---KRL 198 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSE-EEEEEEEEETT---EEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCcc-CcccceecCCC---cEE
Confidence 011111 111 1223333 445788777643 21111 1122 57889999986 4 4
Q ss_pred EEE-EeCC---CeEEEEECCCCeEEEEEeC-CCCce---EEEEEc-CCCCCEEEE-EeCCCeEEEEEecCCcccceeeee
Q 000707 152 LAA-INGP---SVLSLYNTTSASCMWKYDA-SPEYL---SCIRRN-PFDARHFCV-LGLKGLLLSVRVLGQKEDEVVVKE 221 (1341)
Q Consensus 152 Las-~s~d---~~i~lWd~~tg~~i~~~~~-~~~~v---~~~~fs-P~d~~~la~-~~~dG~i~~~d~~~~~~~~~~~k~ 221 (1341)
++. .+.+ ..+.+.|+.+|++...... ...-| ..+.|. + ++..++. .-.+|.-.++-+.....
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~-~~~~~l~~s~~~G~~hly~~~~~~~------- 270 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP-DGNEFLWISERDGYRHLYLYDLDGG------- 270 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT-TSSEEEEEEETTSSEEEEEEETTSS-------
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC-CCCEEEEEEEcCCCcEEEEEccccc-------
Confidence 433 3333 3566788888765433221 11211 233343 5 3333333 33455444433222110
Q ss_pred EEEecCcchhhhhhhhhccccCCCCCCCCcCccceE-EEEEccCCCceEEEEc-----CCeEEEEEcC-CCceeEEEecC
Q 000707 222 LQIQTDCTELLKLERELSAGAASLSPASGLFPLYMV-KFTFSPHWRHIIFVTF-----PRELVVFDLQ-YETPLFSAALP 294 (1341)
Q Consensus 222 ~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~-~~afSpdg~~l~~~~~-----d~~I~iwDl~-t~~~l~~~~l~ 294 (1341)
....|. . ..-.|. -+.+.++++.+.+.+. .+.|..-++. .+... .+.-
T Consensus 271 --------~~~~lT----~-----------G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~-~LT~- 325 (353)
T PF00930_consen 271 --------KPRQLT----S-----------GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPK-CLTC- 325 (353)
T ss_dssp --------EEEESS----------------SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEE-ESST-
T ss_pred --------ceeccc----c-----------CceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeE-eccC-
Confidence 000110 0 011232 2478899888887775 3467777777 55443 2221
Q ss_pred CCccceEEEEEcCCCCEEEEE
Q 000707 295 RGCAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 295 ~~~~~~~~v~~~pdg~~L~s~ 315 (1341)
......++.++|||++++-.
T Consensus 326 -~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 326 -EDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp -TSSTTEEEEE-TTSSEEEEE
T ss_pred -CCCCceEEEECCCCCEEEEE
Confidence 12222578889999977643
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.23 Score=60.79 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=71.2
Q ss_pred CcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCee-EEEEeecCCCccEEEE
Q 000707 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQ-DLCWIVSKPDSFVLAA 154 (1341)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~-~l~wsp~~~~~~lLas 154 (1341)
..|.-+-|+|.- .++|.+-.+|.|.+..+. .+.+-.+++++ . .|+ ++||-||| .+||.
T Consensus 21 ~~i~~~ewnP~~--------------dLiA~~t~~gelli~R~n-~qRlwtip~p~--~-~v~~sL~W~~DG---kllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKM--------------DLIATRTEKGELLIHRLN-WQRLWTIPIPG--E-NVTASLCWRPDG---KLLAV 79 (665)
T ss_pred cceEEEEEcCcc--------------chhheeccCCcEEEEEec-cceeEeccCCC--C-ccceeeeecCCC---CEEEE
Confidence 478889999863 679999999999999987 55555554433 4 555 99999987 89999
Q ss_pred EeCCCeEEEEECCCCeEEEEEeCC-CCceEEEEEcC
Q 000707 155 INGPSVLSLYNTTSASCMWKYDAS-PEYLSCIRRNP 189 (1341)
Q Consensus 155 ~s~d~~i~lWd~~tg~~i~~~~~~-~~~v~~~~fsP 189 (1341)
+-.||+|+|-|+.+|..+....+. ...|.++-|+|
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 999999999999999887653332 24566666654
No 362
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.85 E-value=1.3 Score=54.20 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=73.2
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-----CCeEEEE--ecCCCCCCCCe--eEEEEeecCC
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-----LRSVVLW--IDPDPNPKLGI--QDLCWIVSKP 147 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~-----tg~~~~~--l~~~~h~~~~V--~~l~wsp~~~ 147 (1341)
.|..|.|+|-+. .+...|........|.||-+. +++.+.. -++.+ ..|| +++-|.|..
T Consensus 58 hV~GlsW~P~~~----------~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e--~~pvLpQGCVWHPk~- 124 (671)
T PF15390_consen 58 HVHGLSWAPPCT----------ADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE--PFPVLPQGCVWHPKK- 124 (671)
T ss_pred eeeeeeecCccc----------CCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC--CcccCCCcccccCCC-
Confidence 799999999752 233355556778899999984 1222211 11111 1134 778899987
Q ss_pred CccEEEEEeCCCeEEEEECCCCeEEEEEe-CCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEE
Q 000707 148 DSFVLAAINGPSVLSLYNTTSASCMWKYD-ASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVR 208 (1341)
Q Consensus 148 ~~~lLas~s~d~~i~lWd~~tg~~i~~~~-~~~~~v~~~~fsP~d~~~la~~-~~dG~i~~~d 208 (1341)
.+|++......-.+.++......-+.+ ...+-|.|.+|.+ ||.+|+++ |..=--++||
T Consensus 125 --~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 125 --AILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred --ceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC-cCCEEEEEeCCeEEEEEec
Confidence 789988877666788876433222222 2367899999999 88888776 3322334454
No 363
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.61 E-value=1.3 Score=54.35 Aligned_cols=145 Identities=14% Similarity=0.159 Sum_probs=83.3
Q ss_pred CeeEEEEeecCCCccEEEEEeCC-CeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeC-CC--eEEEEEecC
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGP-SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGL-KG--LLLSVRVLG 211 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d-~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~-dG--~i~~~d~~~ 211 (1341)
.+..=+|+|++..-.++.--... ..+.++|+.+|+......+ ...-..-+|+| |+++|+.... || .|++.|+.+
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~ 271 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDLDG 271 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCCC-CCCEEEEEECCCCCccEEEEcCCC
Confidence 56666899887321122112223 4699999998875544443 23333458999 8898888744 45 455555544
Q ss_pred CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCC---eEEEEEcCCCcee
Q 000707 212 QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPR---ELVVFDLQYETPL 288 (1341)
Q Consensus 212 ~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~---~I~iwDl~t~~~l 288 (1341)
.. +.+|.. . ++-...| .|||||+.+++++..+ .|.+.|++.++..
T Consensus 272 ~~-----------------~~~Lt~----~-----~gi~~~P------s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ 319 (425)
T COG0823 272 KN-----------------LPRLTN----G-----FGINTSP------SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT 319 (425)
T ss_pred Cc-----------------ceeccc----C-----CccccCc------cCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence 21 011111 0 0001122 7899999999998532 5888899877653
Q ss_pred EEEecCCCccceEEEEEcCCCCEEEEEec
Q 000707 289 FSAALPRGCAKFLDVLADPNNDLLYCAHL 317 (1341)
Q Consensus 289 ~~~~l~~~~~~~~~v~~~pdg~~L~s~~~ 317 (1341)
. +....+... .-..+|||+.|+..+.
T Consensus 320 r-iT~~~~~~~--~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 320 R-LTFSGGGNS--NPVWSPDGDKIVFESS 345 (425)
T ss_pred E-eeccCCCCc--CccCCCCCCEEEEEec
Confidence 3 322222111 2234799998887664
No 364
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=93.42 E-value=4.2 Score=49.37 Aligned_cols=241 Identities=17% Similarity=0.212 Sum_probs=114.1
Q ss_pred ceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcEEEEEeecC-CCeEEEEEcCCCcEEEEecCCc
Q 000707 503 TVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAVTASFSVHN-GTVRGLRWLGNSRLVSFSYSQV 581 (1341)
Q Consensus 503 ~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~-~~V~~l~fs~d~~llS~s~d~~ 581 (1341)
.|+.+.|++ ...=||+|...|.|.||.....+... .+. .+-....+.+ +.
T Consensus 3 ~v~~vs~a~----------------~t~Elav~~~~GeVv~~k~~~n~~~~---~~~~~~~~~~~~~~----~~------ 53 (395)
T PF08596_consen 3 SVTHVSFAP----------------ETLELAVGLESGEVVLFKFGKNQNYG---NREQPPDLDYNFRR----FS------ 53 (395)
T ss_dssp -EEEEEEET----------------TTTEEEEEETTS-EEEEEEEE---------------------S------------
T ss_pred eEEEEEecC----------------CCceEEEEccCCcEEEEEcccCCCCC---ccCCCcccCccccc----cc------
Confidence 478888887 34568899999999999875432211 010 0011111110 00
Q ss_pred ccccCcccCeEEEEEccCC---c----eeeeEEeccCCCCCeEEEEECCCCCEEEEEECCCcEEEEeccCCCceeeecc-
Q 000707 582 NEKSGGYINRLVVTCLRSG---I----NRAFRVLQKPERAPIRALRASSSGRYLLILFRDAPVEVWAMTKNPIMLRSLA- 653 (1341)
Q Consensus 582 ~~~sg~~~~~i~lwD~~tG---~----~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl~~t~~~l~~l~- 653 (1341)
..+..-.|.|+... . -.++..+.. ..++|++++.|.=| ++|+|+.+|.+-|-|+ +.+..+..-.
T Consensus 54 -----~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~-~~g~vtal~~S~iG-Fvaigy~~G~l~viD~-RGPavI~~~~i 125 (395)
T PF08596_consen 54 -----LNNSPGKLTDISDRAPPSLKEGFLPLTLLDA-KQGPVTALKNSDIG-FVAIGYESGSLVVIDL-RGPAVIYNENI 125 (395)
T ss_dssp -----GGGSS-SEEE-GGG--TT-SEEEEEEEEE----S-SEEEEEE-BTS-EEEEEETTSEEEEEET-TTTEEEEEEEG
T ss_pred -----ccCCCcceEEehhhCCcccccccCchhheec-cCCcEeEEecCCCc-EEEEEecCCcEEEEEC-CCCeEEeeccc
Confidence 00112234454321 0 123333333 46899999998655 9999999999999999 7877665411
Q ss_pred ----------CceEEEEEcCCCCCCCCCCCCCcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCC-CCCeEEE
Q 000707 654 ----------LPFTVLEWTLPTVPWPSQTGPSRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDD-TSESFAF 722 (1341)
Q Consensus 654 ----------~~v~~l~wsp~~~~~~~~~~~~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~-~~e~la~ 722 (1341)
..+++++|+.-. . ..++ ..-.+.+
T Consensus 126 ~~~~~~~~~~~~vt~ieF~vm~--~-------------------------------------------~~D~ySSi~L~v 160 (395)
T PF08596_consen 126 RESFLSKSSSSYVTSIEFSVMT--L-------------------------------------------GGDGYSSICLLV 160 (395)
T ss_dssp GG--T-SS----EEEEEEEEEE----------------------------------------------TTSSSEEEEEEE
T ss_pred cccccccccccCeeEEEEEEEe--c-------------------------------------------CCCcccceEEEE
Confidence 124567776210 0 0000 0123566
Q ss_pred EecCCcEEEEEec----CC-eeecccCCCCCCccccccceEEEEee--------------------cC---CEEEEEeCC
Q 000707 723 ALANGALGVFEVH----GR-RIRDFRPKWPSSSFISSDGLITAMAY--------------------RL---PHVVMGDRS 774 (1341)
Q Consensus 723 ~~~Dg~I~vwdv~----~~-~v~~~~~~~~~~~l~~~~~~v~sla~--------------------dg---~~LasGs~D 774 (1341)
+...|++.+|.+. ++ .+.-.... ..+.+.|..|.. .| +.++....+
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe 234 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSE 234 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-S
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcc
Confidence 7778888888772 11 11100000 012222332221 11 234444557
Q ss_pred CcEEEEECCCCc-eeeeccCCCcEEEEEEccC---CCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000707 775 GNIRWWDVTTGH-SSQFSTHREGIRRIKFSPV---VPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1341)
Q Consensus 775 gtI~lWDl~tg~-~~~l~gH~~~V~~V~fSP~---~~gd~~~~~Las~s~DgtI~IWDl~~~~~l 835 (1341)
..||++...+.+ .++.....-....+.|-|- ..+ ..|+....||.|+++.+-.-+++
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~----~~Lv~l~~~G~i~i~SLP~Lkei 295 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGG----YCLVCLFNNGSIRIYSLPSLKEI 295 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEE----EEEEEEETTSEEEEEETTT--EE
T ss_pred cceEEEeCCCCcccceeeccccccceEEEEeecccCCc----eEEEEEECCCcEEEEECCCchHh
Confidence 789999998766 3332223234444555431 011 34777899999999999776654
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.27 E-value=3 Score=40.90 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=59.7
Q ss_pred CEEEEEeCCCcEEEEECCCCceeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCCC
Q 000707 766 PHVVMGDRSGNIRWWDVTTGHSSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQFP 845 (1341)
Q Consensus 766 ~~LasGs~DgtI~lWDl~tg~~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~~ 845 (1341)
+-|+.|+.|..||+|+=.. .+..+. -.+.|..+.-... ++++-+..+|||.++|-.... -+.. +.
T Consensus 16 ~eLlvGs~D~~IRvf~~~e-~~~Ei~-e~~~v~~L~~~~~-------~~F~Y~l~NGTVGvY~~~~Rl--WRiK-SK--- 80 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDE-IVAEIT-ETDKVTSLCSLGG-------GRFAYALANGTVGVYDRSQRL--WRIK-SK--- 80 (111)
T ss_pred ceEEEecCCcEEEEEeCCc-EEEEEe-cccceEEEEEcCC-------CEEEEEecCCEEEEEeCccee--eeec-cC---
Confidence 4799999999999998542 133333 3567777776555 578888899999888764432 1111 11
Q ss_pred CCcEEEEEEcCCCCCCCCCeEEEEEECCCcEE
Q 000707 846 GTLVLELDWLPTRTDKNDPLVLCIAGADSSFR 877 (1341)
Q Consensus 846 ~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIr 877 (1341)
..+.++.+... ..+|.+ -|++|=.+|.|-
T Consensus 81 -~~~~~~~~~D~-~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 81 -NQVTSMAFYDI-NGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred -CCeEEEEEEcC-CCCCce-EEEEEecCCeEE
Confidence 23666666543 111333 477888888764
No 366
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.05 E-value=18 Score=40.48 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=73.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEY 181 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~ 181 (1341)
.++.-|+..|.++--|..+|...-+-.+ + . .|.+-+..- + ++++.+...+.+.+-++.||..+|++.. -+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g--~-RiE~sa~vv-g---dfVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-G--V-RIECSAIVV-G---DFVVLGCYSGGLYFLCVKTGSQIWNFVI-LET 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-C--c-eeeeeeEEE-C---CEEEEEEccCcEEEEEecchhheeeeee-hhh
Confidence 5788889999999999999987654322 1 2 444444432 3 5677788889999999999999999876 444
Q ss_pred eEE-EEEcCCCCCEEEEEeCCCeEEEEEecC
Q 000707 182 LSC-IRRNPFDARHFCVLGLKGLLLSVRVLG 211 (1341)
Q Consensus 182 v~~-~~fsP~d~~~la~~~~dG~i~~~d~~~ 211 (1341)
|.+ -..++ |+..+-.+++|+..+..|...
T Consensus 95 vk~~a~~d~-~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 95 VKVRAQCDF-DGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hccceEEcC-CCceEEEecCCCcEEEecccc
Confidence 443 33455 888999999999999987543
No 367
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.05 E-value=0.55 Score=50.20 Aligned_cols=86 Identities=29% Similarity=0.333 Sum_probs=54.8
Q ss_pred CCCceEeCCCCeEEEEcCCeEEEEeCCCcc-e-------------------eEeecCCCC----------CCCCCCCCCC
Q 000707 26 NFGSADLSPSGLLAFASGSSISILDSRSLQ-L-------------------ISTIPIPPP----------TSAGSVASLS 75 (1341)
Q Consensus 26 ~~~a~~~s~~gllA~gs~~~V~v~d~~~~~-~-------------------~~~l~~H~~----------~~~~~~~~~~ 75 (1341)
..++++||.||.||.+.+..|.|.|+.+.. . +..+..+.. .+........
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 357999999999999999999999543322 0 000000000 0000000112
Q ss_pred CcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCC
Q 000707 76 PFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFR 119 (1341)
Q Consensus 76 ~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~ 119 (1341)
+.|.+++|||.|.- ...+-+||.-..+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~--------~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLG--------PNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCC--------CCCceEEEEEcCCCeEEEEecC
Confidence 47899999998732 1346789999999999999865
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.94 E-value=15 Score=48.33 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=42.8
Q ss_pred EcCCeEEEEEcCCCceeEEEecCCCc--------cceE-EEEEcCCCC---EEEEEecCCcEEEEeccCCceeeee
Q 000707 272 TFPRELVVFDLQYETPLFSAALPRGC--------AKFL-DVLADPNND---LLYCAHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 272 ~~d~~I~iwDl~t~~~l~~~~l~~~~--------~~~~-~v~~~pdg~---~L~s~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
.+.+.|.-.|++||+....+....+. .+.+ ++ .-.+|+ .|+.+..+|.+.+.|+++|+.+...
T Consensus 411 ~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~-~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 411 KYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDL-PDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccceEEEEeCCCCceEEEecccCCccccccccCCceEEee-ecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 34677888899999988766542221 1111 11 112563 8999999999999999999976644
No 369
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.81 E-value=38 Score=41.32 Aligned_cols=112 Identities=15% Similarity=0.216 Sum_probs=63.3
Q ss_pred CceEeCCCC-eEEEEc---C---CeEEEEeCCCcceeE-eecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCC
Q 000707 28 GSADLSPSG-LLAFAS---G---SSISILDSRSLQLIS-TIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGS 99 (1341)
Q Consensus 28 ~a~~~s~~g-llA~gs---~---~~V~v~d~~~~~~~~-~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p 99 (1341)
+...+||+| ++||+- | ..|+|+|+.+++.+. .+.... -..+.|++++.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-------------~~~~~W~~d~~----------- 182 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-------------FSSVSWSDDGK----------- 182 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-------------SEEEEECTTSS-----------
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-------------cceEEEeCCCC-----------
Confidence 467899999 888862 2 368999999998764 233222 12399998852
Q ss_pred CCcEEEEE-eC---------CCcEEEEeCCCCeE--EEEecCCCCCCCC-eeEEEEeecCCCccEEEEEeCC---CeEEE
Q 000707 100 SHLLLAAA-DR---------HGRVALLDFRLRSV--VLWIDPDPNPKLG-IQDLCWIVSKPDSFVLAAINGP---SVLSL 163 (1341)
Q Consensus 100 ~g~~LASg-~~---------dG~I~vWDv~tg~~--~~~l~~~~h~~~~-V~~l~wsp~~~~~~lLas~s~d---~~i~l 163 (1341)
.++.+. +. ..+|..|++.++.. ...|+ +....- ...+..++++ ..+++..... +.+.+
T Consensus 183 --~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe--~~~~~~~~~~~~~s~d~--~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 183 --GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE--EPDEPFWFVSVSRSKDG--RYLFISSSSGTSESEVYL 256 (414)
T ss_dssp --EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---TTCTTSEEEEEE-TTS--SEEEEEEESSSSEEEEEE
T ss_pred --EEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe--ecCCCcEEEEEEecCcc--cEEEEEEEccccCCeEEE
Confidence 223333 22 33488999877642 23332 222212 5677777766 2344444333 34666
Q ss_pred EECCCC
Q 000707 164 YNTTSA 169 (1341)
Q Consensus 164 Wd~~tg 169 (1341)
-|+..+
T Consensus 257 ~d~~~~ 262 (414)
T PF02897_consen 257 LDLDDG 262 (414)
T ss_dssp EECCCT
T ss_pred Eecccc
Confidence 677654
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.55 E-value=0.54 Score=60.84 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=53.5
Q ss_pred CeEEEEc-CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEE
Q 000707 36 GLLAFAS-GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVA 114 (1341)
Q Consensus 36 gllA~gs-~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~ 114 (1341)
+++|+|+ ++.|...|.... +-. .|.+ ....++|++|+|+-+ |.+|+.|-.+|.|.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n-L~~---~~~n------e~v~~~Vtsvafn~d--------------g~~l~~G~~~G~V~ 155 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN-LGP---LHQN------ERVQGPVTSVAFNQD--------------GSLLLAGLGDGHVT 155 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc-cch---hhcC------CccCCcceeeEecCC--------------CceeccccCCCcEE
Confidence 3677775 468888776542 110 1221 112358999999965 68899999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCCCeeEEE
Q 000707 115 LLDFRLRSVVLWIDPDPNPKLGIQDLC 141 (1341)
Q Consensus 115 vWDv~tg~~~~~l~~~~h~~~~V~~l~ 141 (1341)
+||+..+..++.+...+ . |++++-
T Consensus 156 v~D~~~~k~l~~i~e~~--a-p~t~vi 179 (1206)
T KOG2079|consen 156 VWDMHRAKILKVITEHG--A-PVTGVI 179 (1206)
T ss_pred EEEccCCcceeeeeecC--C-ccceEE
Confidence 99999998888864433 3 444443
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.49 E-value=31 Score=40.52 Aligned_cols=123 Identities=11% Similarity=0.048 Sum_probs=66.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEE-cCCCcEEEEecCCcccccCcccCeEEEEEccCCce-eee
Q 000707 528 AVPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRW-LGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN-RAF 605 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~f-s~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~-~~l 605 (1341)
.+.++.+--..+.|.-||..+|.. +.+. +.+.+.++.. ..+++++++.. .+.++++.+|.. ..+
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~------------g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH------------GVRLLDPDTGGKITLL 101 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc------------ccEEEeccCCceeEEe
Confidence 344777888889999999987753 2232 2333444443 45556665432 356677666653 222
Q ss_pred EEec-cCCCCCeEEEEECCCCCEEEEEEC----C-----CcEEEEeccCCCceeeeccCce---EEEEEcCC
Q 000707 606 RVLQ-KPERAPIRALRASSSGRYLLILFR----D-----APVEVWAMTKNPIMLRSLALPF---TVLEWTLP 664 (1341)
Q Consensus 606 ~~l~-~~~~~~I~~i~~SpdG~~Las~s~----D-----~~I~vWDl~~t~~~l~~l~~~v---~~l~wsp~ 664 (1341)
.... +......+.+.+.|+|++-+.... + ..-.||-+...+...+.+...+ ++++|||+
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpD 173 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPD 173 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCC
Confidence 2111 112234568899999998876533 0 0113444411333444333323 46888876
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.43 E-value=17 Score=44.44 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=95.1
Q ss_pred cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCC----CCceE-EEE
Q 000707 112 RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS----PEYLS-CIR 186 (1341)
Q Consensus 112 ~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~----~~~v~-~~~ 186 (1341)
.|.|++. .|+.+..+.... + .|-++.|+.+ +.|+....||.++++|.. |+. .+... ...|. |.-
T Consensus 62 ~I~iys~-sG~ll~~i~w~~--~-~iv~~~wt~~----e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i 130 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS--G-RIVGMGWTDD----EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRI 130 (410)
T ss_pred EEEEECC-CCCEeEEEEECC--C-CEEEEEECCC----CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCcccccc
Confidence 4889995 577777765544 5 8999999875 345567789999999985 655 22221 11222 211
Q ss_pred Ec-CCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCC
Q 000707 187 RN-PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHW 265 (1341)
Q Consensus 187 fs-P~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg 265 (1341)
|. .|-..-+++...++.++... .... ....+. +..+...+.. ....+....-..++.+.
T Consensus 131 ~~~~~~~~GivvLt~~~~~~~v~--n~~~-~~~~~~---------~~~~p~~~~~--------~~~~~~~~~i~~l~~~~ 190 (410)
T PF04841_consen 131 FAIWFYKNGIVVLTGNNRFYVVN--NIDE-PVKLRR---------LPEIPGLWTK--------FHWWPSWTVIPLLSSDR 190 (410)
T ss_pred cccccCCCCEEEECCCCeEEEEe--Cccc-cchhhc---------cccCCCcccc--------cccccccccceEeecCc
Confidence 11 22223355554455554431 1000 000000 0001111100 00001000002466666
Q ss_pred CceEEEEcCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEEecc
Q 000707 266 RHIIFVTFPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIWRRK 327 (1341)
Q Consensus 266 ~~l~~~~~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW~~~ 327 (1341)
...+....+..+.+.|-..-+. + . ...++..++.+|+|+.||....+|.+.+....
T Consensus 191 ~~~i~~~~g~~i~~i~~~~~~~---i--~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 191 VVEILLANGETIYIIDENSFKQ---I--D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred ceEEEEecCCEEEEEEcccccc---c--c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 6666666667777455332211 1 1 23578999999999999999999998887654
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.19 E-value=0.76 Score=59.54 Aligned_cols=111 Identities=17% Similarity=0.214 Sum_probs=76.8
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCc--eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000707 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGH--SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1341)
Q Consensus 758 v~sla~dg~~LasGs~DgtI~lWDl~tg~--~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l 835 (1341)
+.+.+..+-.+|.|++.|.|-..|+...- .++=..-.++|++++|+-+ | .+++.|..+|-|.+||+..+..+
T Consensus 92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~d--g----~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 92 VISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQD--G----SLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCC--C----ceeccccCCCcEEEEEccCCcce
Confidence 55566667789999999999988886532 1221234689999999988 4 67888889999999999997744
Q ss_pred ccccc-cCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccCC
Q 000707 836 ANSLL-QPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNTE 884 (1341)
Q Consensus 836 ~~~l~-~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~~ 884 (1341)
+.+. .+| ++..|.-+.|... +. .+.++..-|+ +|+..-+
T Consensus 166 -~~i~e~~a-p~t~vi~v~~t~~----nS--~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 166 -KVITEHGA-PVTGVIFVGRTSQ----NS--KLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred -eeeeecCC-ccceEEEEEEeCC----Cc--EEEEccCCCc--eEEEEec
Confidence 2222 232 2456777788765 33 4567766665 7876543
No 374
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.85 E-value=1.2 Score=55.54 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=82.0
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCceee--eccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCcc
Q 000707 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHSSQ--FSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPL 835 (1341)
Q Consensus 758 v~sla~dg~~LasGs~DgtI~lWDl~tg~~~~--l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l 835 (1341)
.+|++-.+++|+.|++-|.+++++-.+|+.+. ..+-.+.+..+..|++ . .++|.++..|.|.|+-+....+-
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~--e----~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSV--E----YLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecch--h----HhhhhhcCCceEEeehhhccCCC
Confidence 56777788999999999999999998887544 3445556666667777 1 45677788899999988764321
Q ss_pred ccccc-cCCC-CCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 836 ANSLL-QPQF-PGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 836 ~~~l~-~gh~-~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
...+. ..|. +...|+++.|+++ +. .|.+|..-|+|-+-.+.+
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~----~~--k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKN----GM--KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeeccccccCCceEEEEEeccc----cc--EEeecCCCceEEEEEech
Confidence 11111 2222 3478999999997 44 567999999998887766
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=90.80 E-value=17 Score=46.49 Aligned_cols=154 Identities=11% Similarity=0.089 Sum_probs=74.9
Q ss_pred eeEEEEeecCCCccEEEEEeCC------------CeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeE
Q 000707 137 IQDLCWIVSKPDSFVLAAINGP------------SVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLL 204 (1341)
Q Consensus 137 V~~l~wsp~~~~~~lLas~s~d------------~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i 204 (1341)
...-.|+|++ ..|++.... +.+.+.+++.|+... .. ...|..++|+| |+.++++.. +|.|
T Consensus 399 ~t~PsWspDG---~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~-~g~Issl~wSp-DG~RiA~i~-~g~v 470 (591)
T PRK13616 399 LTRPSWSLDA---DAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV-PGPISELQLSR-DGVRAAMII-GGKV 470 (591)
T ss_pred CCCceECCCC---CceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc-CCCcCeEEECC-CCCEEEEEE-CCEE
Confidence 4556899986 444444321 222222444333211 11 34699999999 999999887 4776
Q ss_pred EEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcCC
Q 000707 205 LSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQY 284 (1341)
Q Consensus 205 ~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~t 284 (1341)
++--+..... +. ..+. ...++. +. ......++.+.+++. |+.+..+..-.+|-+..
T Consensus 471 ~Va~Vvr~~~----G~-~~l~----~~~~l~-----------~~---l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~v 526 (591)
T PRK13616 471 YLAVVEQTED----GQ-YALT----NPREVG-----------PG---LGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNL 526 (591)
T ss_pred EEEEEEeCCC----Cc-eeec----ccEEee-----------cc---cCCccccceEecCCE-EEEEecCCCCceEEEec
Confidence 6621111000 00 1000 000000 00 001135678999887 55555444334444432
Q ss_pred -CceeEEEecCCCccceEEEEEcCCCCEEEEEecCCcEEEE
Q 000707 285 -ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDGKLSIW 324 (1341)
Q Consensus 285 -~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~DgtI~lW 324 (1341)
|.....++..+-..++..|+..+ +.||....+|.+.+=
T Consensus 527 DG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l~ 565 (591)
T PRK13616 527 DGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQLP 565 (591)
T ss_pred CCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEec
Confidence 32221112111245677777775 357777777755443
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.79 E-value=20 Score=41.12 Aligned_cols=179 Identities=15% Similarity=0.131 Sum_probs=103.9
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s 156 (1341)
.|.++.|+|+. +.|.+-.....-.||=..+|..+++.++++-+. -..+.|.-++ .+.++--
T Consensus 87 nvS~LTynp~~--------------rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D--pE~Ieyig~n---~fvi~dE 147 (316)
T COG3204 87 NVSSLTYNPDT--------------RTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD--PETIEYIGGN---QFVIVDE 147 (316)
T ss_pred cccceeeCCCc--------------ceEEEecCCCceEEEEecCCceEEEecccccCC--hhHeEEecCC---EEEEEeh
Confidence 79999999874 556666667777799888999999988876544 3567777655 6666655
Q ss_pred CCCeEEEEECCCCeEEE-----EEeC-----CCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCCcccceeeeeEEEec
Q 000707 157 GPSVLSLYNTTSASCMW-----KYDA-----SPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQT 226 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~~i~-----~~~~-----~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~ 226 (1341)
.++.+.+..+..++.+. +++. ....+-.++++| ...+|.++-...-+.++.+.. .++..
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~-~~~~l--------- 216 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQ-SPSSL--------- 216 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEec-CCccc---------
Confidence 67777777665442111 1111 123456899999 556666655544444433321 11010
Q ss_pred CcchhhhhhhhhccccCCCCC-CC-CcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEEecCCCccc
Q 000707 227 DCTELLKLERELSAGAASLSP-AS-GLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSAALPRGCAK 299 (1341)
Q Consensus 227 ~~~~l~~l~~~~~~~s~~~~p-~~-~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~~~~~~ 299 (1341)
..+... .| +. .-+-..+-++.|.+...+++..+ .++-+.-.|++ |..+..+.+.++..+
T Consensus 217 --------~~~~~~-----~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~g 278 (316)
T COG3204 217 --------SVHASL-----DPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHG 278 (316)
T ss_pred --------cccccc-----CcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCC
Confidence 000000 00 00 01112345678887766776666 56777777776 555666666554433
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=90.66 E-value=5.1 Score=48.94 Aligned_cols=104 Identities=15% Similarity=0.289 Sum_probs=61.0
Q ss_pred CCCEEEEE-eCCC----cEEEEeCCCCcEEEE-EeecCCCeEEEEEcCCCc-EEEEecCCcccc-cCcccCeEEEEEccC
Q 000707 528 AVPLVALG-TQSG----AVDVVDVSANAVTAS-FSVHNGTVRGLRWLGNSR-LVSFSYSQVNEK-SGGYINRLVVTCLRS 599 (1341)
Q Consensus 528 ~~~llAsG-s~DG----tI~lWDl~tg~~~~~-l~~H~~~V~~l~fs~d~~-llS~s~d~~~~~-sg~~~~~i~lwD~~t 599 (1341)
+++++|.+ +..| +|++.|+.+|+.+.. +.. ..-..+.|.+++. ++-...+..... ..++...|..|.+.+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 67888755 3444 599999999976543 222 1123499999874 444444431100 123356789999877
Q ss_pred CceeeeEEeccCCCCC-eEEEEECCCCCEEEEEEC
Q 000707 600 GINRAFRVLQKPERAP-IRALRASSSGRYLLILFR 633 (1341)
Q Consensus 600 G~~~~l~~l~~~~~~~-I~~i~~SpdG~~Las~s~ 633 (1341)
+.......+.+....- ...+..|+||++|++.+.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 7543223334433333 678999999999886543
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.53 E-value=0.6 Score=38.50 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCc
Q 000707 501 SSTVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANA 550 (1341)
Q Consensus 501 ~~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~ 550 (1341)
+..|.+++||| ...+||.|+.+|.|.|+.+ +++
T Consensus 11 ~~~v~~~~w~P----------------~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP----------------TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC----------------CCCEEEEEECCCeEEEEEC-CCc
Confidence 56799999999 4789999999999999998 443
No 379
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.07 E-value=45 Score=39.14 Aligned_cols=228 Identities=16% Similarity=0.110 Sum_probs=111.2
Q ss_pred eEeCCCC-eEEEE--cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 30 ADLSPSG-LLAFA--SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 30 ~~~s~~g-llA~g--s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
-.|.++. .|.+. -++.|.-||+.+++.. ++..+.. ++++..-. .+.+|++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~p~~------------~~~~~~~d--------------~~g~Lv~ 82 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPSPGG------------FSSGALID--------------AGGRLIA 82 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEECCCC------------cccceeec--------------CCCeEEE
Confidence 3566654 23333 4678888888766542 3444432 33333222 1334555
Q ss_pred EeCCCcEEEEeCCCCeEEEEe-cC-CCCCCCCeeEEEEeecCCCccEEEEEeC---------CCeEEEEECC-CCeEEEE
Q 000707 107 ADRHGRVALLDFRLRSVVLWI-DP-DPNPKLGIQDLCWIVSKPDSFVLAAING---------PSVLSLYNTT-SASCMWK 174 (1341)
Q Consensus 107 g~~dG~I~vWDv~tg~~~~~l-~~-~~h~~~~V~~l~wsp~~~~~~lLas~s~---------d~~i~lWd~~-tg~~i~~ 174 (1341)
+. + -+.++|+.++..+..+ +. .+.....-+++...|++ .+-++-.. ...-.||-+. .|..+..
T Consensus 83 ~~-~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG---~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l 157 (307)
T COG3386 83 CE-H-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG---RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL 157 (307)
T ss_pred Ec-c-ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC---CEEEeCCCccccCccccCCcceEEEEcCCCCEEEe
Confidence 43 2 3567787766653322 12 22222245677777765 44333222 0111344444 3444333
Q ss_pred EeCCCCceEEEEEcCCCCCEEEEE-eCCCeEEEEEecC-CcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcC
Q 000707 175 YDASPEYLSCIRRNPFDARHFCVL-GLKGLLLSVRVLG-QKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLF 252 (1341)
Q Consensus 175 ~~~~~~~v~~~~fsP~d~~~la~~-~~dG~i~~~d~~~-~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~ 252 (1341)
...+-..-+.++||| |++.|-.+ +..+.|..+++.. ....... +.+.. .+. .
T Consensus 158 ~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~-~~~~~-------------~~~-----------~ 211 (307)
T COG3386 158 LDDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLDPATGPIGGR-RGFVD-------------FDE-----------E 211 (307)
T ss_pred ecCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecCcccCccCCc-ceEEE-------------ccC-----------C
Confidence 332222336899999 77666555 5557777776542 1111110 00100 000 0
Q ss_pred ccceEEEEEccCCCceEEEEcCC-eEEEEEcCCCceeEEEecCCCccceEEEEE-cCCCCEEEEEecC
Q 000707 253 PLYMVKFTFSPHWRHIIFVTFPR-ELVVFDLQYETPLFSAALPRGCAKFLDVLA-DPNNDLLYCAHLD 318 (1341)
Q Consensus 253 ~~~v~~~afSpdg~~l~~~~~d~-~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~-~pdg~~L~s~~~D 318 (1341)
+..--.++.-.+|..-+.+...+ .|.+|+.. |+.+..+.++. .....++| .|+.+.|+..+..
T Consensus 212 ~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 212 PGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred CCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEecC
Confidence 01111234444554333333333 89999999 99999888874 22223444 4677877766553
No 380
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=89.99 E-value=0.8 Score=53.08 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=47.4
Q ss_pred hhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhccccc-----HHHHHHHHHHhCCHHHHHH
Q 000707 1184 THLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHN-----IWRALILYVAAGGLQEALA 1258 (1341)
Q Consensus 1184 v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~-----~~~A~~~~~~~g~~~~a~~ 1258 (1341)
|+.++..|+.++||+++...+.|.+|+.||... .++-..+|..++..+-...+.+ ..-.++.-+-.|+..++++
T Consensus 2 I~~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~-g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~ 80 (284)
T PF12931_consen 2 IQQLLLVGNREEAVELALDNGLWAHALLLASSL-GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVD 80 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHH
Confidence 466889999999999999999999999999654 4445778999999998644332 0112233334666666655
Q ss_pred HHH
Q 000707 1259 ALR 1261 (1341)
Q Consensus 1259 ~l~ 1261 (1341)
-|.
T Consensus 81 ~l~ 83 (284)
T PF12931_consen 81 ELV 83 (284)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.76 E-value=2.1 Score=55.64 Aligned_cols=101 Identities=17% Similarity=0.067 Sum_probs=65.3
Q ss_pred eEEEEcCCeEEEEeCCCcc--eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEE
Q 000707 37 LLAFASGSSISILDSRSLQ--LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVA 114 (1341)
Q Consensus 37 llA~gs~~~V~v~d~~~~~--~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~ 114 (1341)
.+.--+++.+.-||||-.. ++.. ..|.- +....-+|++=+.+| .||.|+.+|.||
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~-~~k~Y-------~~~~~Fs~~aTt~~G---------------~iavgs~~G~IR 601 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDS-QSKQY-------SSKNNFSCFATTEDG---------------YIAVGSNKGDIR 601 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeec-ccccc-------ccCCCceEEEecCCc---------------eEEEEeCCCcEE
Confidence 3443477899999998432 3321 22221 112355666655443 799999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC
Q 000707 115 LLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1341)
Q Consensus 115 vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1341)
++|- .|..-.+. +++-.. ||.+|+-+.||. ++|||| +..|.|.++.
T Consensus 602 Lyd~-~g~~AKT~-lp~lG~-pI~~iDvt~DGk--wilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 602 LYDR-LGKRAKTA-LPGLGD-PIIGIDVTADGK--WILATC--KTYLLLIDTL 647 (794)
T ss_pred eecc-cchhhhhc-CCCCCC-CeeEEEecCCCc--EEEEee--cceEEEEEEe
Confidence 9994 44322222 455445 999999999873 677777 6788898874
No 382
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.27 E-value=5.9 Score=51.66 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=89.4
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC-
Q 000707 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR- 121 (1341)
Q Consensus 43 ~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg- 121 (1341)
.+.|+-.|...|+++.....|.. +..+.|.|+...-.+ ++.. -..|=.+..+..||.+-.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~------------~~v~~~~p~~K~aql-----t~e~--tflGls~n~lfriDpR~~~ 563 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDD------------IPVVDIAPDSKFAQL-----TNEQ--TFLGLSDNSLFRIDPRLSG 563 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCC------------cceeEeccccccccc-----CCCc--eEEEECCCceEEeccCCCC
Confidence 36777888889999999988875 446677776543111 2333 345556788999998753
Q ss_pred eEEEEecC-CCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE-EEEEeCCCCceEEEEEcCCCCCEEEEEe
Q 000707 122 SVVLWIDP-DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWKYDASPEYLSCIRRNPFDARHFCVLG 199 (1341)
Q Consensus 122 ~~~~~l~~-~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~~~~~~~~v~~~~fsP~d~~~la~~~ 199 (1341)
..+..-.. +-.++..-++++=+.+ -.||+|+.+|-|+|||- .|.. ...+.+-.++|..+..+. ||+.+++.+
T Consensus 564 ~k~v~~~~k~Y~~~~~Fs~~aTt~~----G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~-DGkwilaTc 637 (794)
T PF08553_consen 564 NKLVDSQSKQYSSKNNFSCFATTED----GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTA-DGKWILATC 637 (794)
T ss_pred CceeeccccccccCCCceEEEecCC----ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecC-CCcEEEEee
Confidence 22222111 1122323444443333 37899999999999995 4432 122333357999999998 999988877
Q ss_pred CCCeEEEEEe
Q 000707 200 LKGLLLSVRV 209 (1341)
Q Consensus 200 ~dG~i~~~d~ 209 (1341)
. ..+++++.
T Consensus 638 ~-tyLlLi~t 646 (794)
T PF08553_consen 638 K-TYLLLIDT 646 (794)
T ss_pred c-ceEEEEEE
Confidence 5 55556554
No 383
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.04 E-value=0.64 Score=38.34 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=31.1
Q ss_pred CeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEE
Q 000707 136 GIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMW 173 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~ 173 (1341)
+|..++|+|.. ++||.++.+|.|.++.+ +++++|
T Consensus 13 ~v~~~~w~P~m---dLiA~~t~~g~v~v~Rl-~~qriw 46 (47)
T PF12894_consen 13 RVSCMSWCPTM---DLIALGTEDGEVLVYRL-NWQRIW 46 (47)
T ss_pred cEEEEEECCCC---CEEEEEECCCeEEEEEC-CCcCcc
Confidence 79999999987 89999999999999999 787776
No 384
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.74 E-value=1.7 Score=55.91 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=77.0
Q ss_pred HHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHh-hhhcc--------ccHHH------------HHHHHHHHHHHHHHc
Q 000707 1119 HELVSVGNLEAAVSLLLSTSPESSYFYANALRAV-ALSSA--------VSRSL------------LELAVKVVAANMVRN 1177 (1341)
Q Consensus 1119 ~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~-~~a~~--------~s~~~------------~~~~~k~~a~~l~~~ 1177 (1341)
.-+++-||+++||++|.+.+ .++.+|..-. +++-. .+.++ +-..|..+.+.+. .
T Consensus 266 ~~LlLtgqFE~AI~~L~~~~----~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~-~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYRNE----FNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE-I 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHHTTT-T
T ss_pred HHHHHHhhHHHHHHHHHhhc----cCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh-c
Confidence 56777799999999999933 3677776542 22211 11111 1334444555333 3
Q ss_pred cCCcchhhHHHhcCcHHH---------HHHHh-hccCcHH------------------HHHHHHHhhcCCccHHHHHHHH
Q 000707 1178 DRSLSGTHLLCAVGRYQE---------ACSQL-QDAGCWT------------------DAATLAATHLKGSDYARVLQRW 1229 (1341)
Q Consensus 1178 ~~~~~~v~~~~~~g~~~~---------a~~~l-~~~~~w~------------------~a~~la~~~l~~~~~~~~~~r~ 1229 (1341)
.+-.+|++||..+...++ +|+=| ...++|. +=..|.+.....++...++++=
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 334789999988877543 22211 1111111 1111111223445667888888
Q ss_pred HHHhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000707 1230 ADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1230 a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
|......+ +...|++||--+|++.+|+++|-+
T Consensus 421 A~~~e~~g-~~~dAi~Ly~La~~~d~vl~lln~ 452 (613)
T PF04097_consen 421 AREAEERG-RFEDAILLYHLAEEYDKVLSLLNR 452 (613)
T ss_dssp HHHHHHCT--HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHCC-CHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88876665 367999999999999999999865
No 385
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.43 E-value=51 Score=37.55 Aligned_cols=101 Identities=19% Similarity=0.142 Sum_probs=55.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCC-CcEEEEEeecCCCeEEEEEcCCC-cEEEEecCCcccccCcccCeEEEEEccCCceeee
Q 000707 528 AVPLVALGTQSGAVDVVDVSA-NAVTASFSVHNGTVRGLRWLGNS-RLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAF 605 (1341)
Q Consensus 528 ~~~llAsGs~DGtI~lWDl~t-g~~~~~l~~H~~~V~~l~fs~d~-~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l 605 (1341)
++..|+.|+++| |.++++.. ....+.. +...|..|...++- .++..+ |+.+.++++.+-.....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-----------d~~l~~~~L~~l~~~~~ 71 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-----------DGQLYVYDLDSLEPVST 71 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-----------CCccEEEEchhhccccc
Confidence 578999999999 99999932 2232222 23348888888754 444433 24788888754221110
Q ss_pred E-----------EeccCCCCCeEEEE--ECCCCCEEEEEECCCcEEEEec
Q 000707 606 R-----------VLQKPERAPIRALR--ASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 606 ~-----------~l~~~~~~~I~~i~--~SpdG~~Las~s~D~~I~vWDl 642 (1341)
. ...-+....+...+ -...+...+.....+.|.||..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~ 121 (275)
T PF00780_consen 72 SAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEW 121 (275)
T ss_pred cccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEE
Confidence 0 00001222344333 2233444444555568999987
No 386
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=87.43 E-value=94 Score=39.47 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=45.8
Q ss_pred CcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCC-CCee-------EEEEeecCCCccEEEEEeCCCeEEEEECCCCeEE
Q 000707 101 HLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPK-LGIQ-------DLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCM 172 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~-~~V~-------~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i 172 (1341)
+.+|..++.+|.|.-.|..+|+.+-.+....... .++. .++.. + ..+..++.|+.|.-.|..||+.+
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~---~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--D---GKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--C---CEEEEEcCCCEEEEEECCCCCEE
Confidence 3466677778889888999998776654321110 0110 01111 1 34555677899999999999999
Q ss_pred EEEeC
Q 000707 173 WKYDA 177 (1341)
Q Consensus 173 ~~~~~ 177 (1341)
|+...
T Consensus 144 W~~~~ 148 (527)
T TIGR03075 144 WSKKN 148 (527)
T ss_pred eeccc
Confidence 98754
No 387
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.15 E-value=1.9 Score=53.88 Aligned_cols=104 Identities=16% Similarity=0.268 Sum_probs=75.8
Q ss_pred CCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccccceEEEEee--cCCEEEEEeCCCcEEEEECCCCcee----
Q 000707 715 DTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAY--RLPHVVMGDRSGNIRWWDVTTGHSS---- 788 (1341)
Q Consensus 715 ~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~--dg~~LasGs~DgtI~lWDl~tg~~~---- 788 (1341)
...+.+++|+.-|.+++|+-.++..+..+.. +.++.++..+. +..++|.|+..|.|.|+-++.+...
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-------~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~ 115 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-------GATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY 115 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhccccc-------CccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence 3457889999999999999877665432211 22344444444 6678889999999999988775421
Q ss_pred --ee-ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 789 --QF-STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 789 --~l-~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
.+ ..|+..|+++.|+++ + .++.+|..-|+|.+-.+++
T Consensus 116 ~t~~d~~~~~rVTal~Ws~~--~----~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 VTPCDKSHKCRVTALEWSKN--G----MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eccccccCCceEEEEEeccc--c----cEEeecCCCceEEEEEech
Confidence 11 458899999999999 5 6788888888888877776
No 388
>PHA02713 hypothetical protein; Provisional
Probab=85.90 E-value=44 Score=42.74 Aligned_cols=65 Identities=9% Similarity=0.071 Sum_probs=41.7
Q ss_pred EeecCCEEEEEeCCC------cEEEEECCC-Cc---eeeeccCCCcEEEEEEccCCCCCCCCCEEEEEECCC--eEEEEE
Q 000707 761 MAYRLPHVVMGDRSG------NIRWWDVTT-GH---SSQFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN--TFSVFD 828 (1341)
Q Consensus 761 la~dg~~LasGs~Dg------tI~lWDl~t-g~---~~~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dg--tI~IWD 828 (1341)
.+.+|++-+.|+.++ .+..||..+ .+ ...++..+.....+.+ + | ...++|+.|+ ++..+|
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~--~----~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--D--N----TIMMLHCYESYMLQDTFN 531 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--C--C----EEEEEeeecceeehhhcC
Confidence 445888878887642 467899988 55 2344444444444443 2 2 4567788888 788888
Q ss_pred CCCCC
Q 000707 829 LDSQD 833 (1341)
Q Consensus 829 l~~~~ 833 (1341)
..+.+
T Consensus 532 ~~~~~ 536 (557)
T PHA02713 532 VYTYE 536 (557)
T ss_pred ccccc
Confidence 88766
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=85.46 E-value=37 Score=43.43 Aligned_cols=106 Identities=17% Similarity=0.119 Sum_probs=59.6
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCcEEE--EEeecCCCeEEEEEcCCCcEEEEecCCcccccC-cccCeEEEEEcc
Q 000707 528 AVPLVALGTQSG------AVDVVDVSANAVTA--SFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSG-GYINRLVVTCLR 598 (1341)
Q Consensus 528 ~~~llAsGs~DG------tI~lWDl~tg~~~~--~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg-~~~~~i~lwD~~ 598 (1341)
.+.+++.|+.++ +|..+|..++.-.. .+. +.....+++...+--+++++++. | ..-+++..+|.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~~~lYv~GG~~~-----~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLNGKLYVVGGYDS-----GSDRLSSVERYDPR 357 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEECCEEEEEccccC-----CCcccceEEEecCC
Confidence 367888888884 68899998874322 222 12223345555554555555541 1 122578889998
Q ss_pred CCceeeeEEeccCCCCCeEEEEECCCCCEEEEEECCC-----cEEEEec
Q 000707 599 SGINRAFRVLQKPERAPIRALRASSSGRYLLILFRDA-----PVEVWAM 642 (1341)
Q Consensus 599 tG~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~-----~I~vWDl 642 (1341)
+++...+..+.. .....-...-+|..-|+|+.|+ +++.||.
T Consensus 358 ~~~W~~~a~M~~---~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp 403 (571)
T KOG4441|consen 358 TNQWTPVAPMNT---KRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDP 403 (571)
T ss_pred CCceeccCCccC---ccccceeEEECCEEEEEeccccccccccEEEecC
Confidence 877443322211 1111111223688888998885 4677776
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=85.28 E-value=25 Score=41.33 Aligned_cols=150 Identities=12% Similarity=0.149 Sum_probs=88.6
Q ss_pred CCceEeCCCCeEEEEcCCeEEEEeCCCcc-eeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 27 FGSADLSPSGLLAFASGSSISILDSRSLQ-LISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 27 ~~a~~~s~~gllA~gs~~~V~v~d~~~~~-~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
+.++.-= +|.|+.+.++.|.+++....+ +...-..+.. ..|+++... +.+++
T Consensus 91 V~ai~~~-~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~----------~~i~sl~~~----------------~~~I~ 143 (321)
T PF03178_consen 91 VTAICSF-NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSP----------FYITSLSVF----------------KNYIL 143 (321)
T ss_dssp EEEEEEE-TTEEEEEETTEEEEEEEETTSSEEEEEEE-BS----------SSEEEEEEE----------------TTEEE
T ss_pred ceEhhhh-CCEEEEeecCEEEEEEccCcccchhhheecce----------EEEEEEecc----------------ccEEE
Confidence 4444433 667888889999999987776 4433323332 267887765 35899
Q ss_pred EEeCCCcEEEEeCCC-CeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCC-------Ce-EE-EEE
Q 000707 106 AADRHGRVALLDFRL-RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTS-------AS-CM-WKY 175 (1341)
Q Consensus 106 Sg~~dG~I~vWDv~t-g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~t-------g~-~i-~~~ 175 (1341)
.|+.-.-|.++.+.. +..+..+.-+.... .|.+++|.+++ +.+++++.++.|.++.... +. .+ ..-
T Consensus 144 vgD~~~sv~~~~~~~~~~~l~~va~d~~~~-~v~~~~~l~d~---~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~ 219 (321)
T PF03178_consen 144 VGDAMKSVSLLRYDEENNKLILVARDYQPR-WVTAAEFLVDE---DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERIS 219 (321)
T ss_dssp EEESSSSEEEEEEETTTE-EEEEEEESS-B-EEEEEEEE-SS---SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEE
T ss_pred EEEcccCEEEEEEEccCCEEEEEEecCCCc-cEEEEEEecCC---cEEEEEcCCCeEEEEEECCCCcccccccccceeEE
Confidence 999888888775533 44344432222233 68999999776 4788899999999887641 22 22 222
Q ss_pred eCC-CCceEEE---EEcCC--CCC-----EEEEEeCCCeEEEE
Q 000707 176 DAS-PEYLSCI---RRNPF--DAR-----HFCVLGLKGLLLSV 207 (1341)
Q Consensus 176 ~~~-~~~v~~~---~fsP~--d~~-----~la~~~~dG~i~~~ 207 (1341)
.+| .+.|+++ ++.|. +.. .+..++.+|.|...
T Consensus 220 ~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 220 SFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 222 4677777 55552 222 37777888888753
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.73 E-value=2.3 Score=46.68 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=56.8
Q ss_pred CCeEEEEecCCcEEEEEec--CCeeecccCCCCCCccccccceEEEEee---cCCEEEEEeCCCcEEEEECCCCceeee-
Q 000707 717 SESFAFALANGALGVFEVH--GRRIRDFRPKWPSSSFISSDGLITAMAY---RLPHVVMGDRSGNIRWWDVTTGHSSQF- 790 (1341)
Q Consensus 717 ~e~la~~~~Dg~I~vwdv~--~~~v~~~~~~~~~~~l~~~~~~v~sla~---dg~~LasGs~DgtI~lWDl~tg~~~~l- 790 (1341)
...++.+..||.|++|..+ |.....+ + .....|.++-. ++.+..+|..||+||.|+++-.+...+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~----~-----s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV----C-----SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh----h-----cccccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 3567889999999998774 3322110 0 11223444444 556888999999999999987764333
Q ss_pred ccCC-CcEEEEEEccCCCCCCCCCEEEEE--ECCCeEEEEECCC
Q 000707 791 STHR-EGIRRIKFSPVVPGDRSRGRIAVL--FHDNTFSVFDLDS 831 (1341)
Q Consensus 791 ~gH~-~~V~~V~fSP~~~gd~~~~~Las~--s~DgtI~IWDl~~ 831 (1341)
..|. ..+.....+-. + +.|+++ |.|.+++.|++..
T Consensus 141 g~h~~~~~e~~ivv~s--d----~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGS--D----EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecC--C----ceEEeeccccchhhhhcchhh
Confidence 3343 22222222211 1 344444 5566666666554
No 392
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.42 E-value=3.8 Score=51.57 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhh---cccccHH
Q 000707 1165 LAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVH---HVEHNIW 1241 (1341)
Q Consensus 1165 ~~~k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~---~~~~~~~ 1241 (1341)
--+.-.|.||..+++..+|...|=..||+.||.-..++.++|+|+.-++...-+ .|....-+-.++.|+ ++..+-.
T Consensus 923 ~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~-~e~~~~AE~L~S~l~ve~R~~~da~ 1001 (1243)
T COG5290 923 FKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKG-YEFNLCAELLPSDLLVEFRKAGDAE 1001 (1243)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcc-hHHHHHHHhhhhhHHHHHHHhcCHH
Confidence 344567999999999999999999999999999999999999999977766542 334433333444332 1111123
Q ss_pred HHHHHHHHhCCHHHHHHHHHhcCCchHHHHHHH
Q 000707 1242 RALILYVAAGGLQEALAALREAQHPDTAAMFVL 1274 (1341)
Q Consensus 1242 ~A~~~~~~~g~~~~a~~~l~~~~~~~~aa~~~~ 1274 (1341)
++.+.| +.+..+|..+.-+.-+|+.|-+.+.
T Consensus 1002 ~i~l~y--l~N~~eava~~ckgs~y~ea~~~a~ 1032 (1243)
T COG5290 1002 KILLTY--LENLYEAVAMDCKGSEYREAFCEAM 1032 (1243)
T ss_pred HHHHHH--HhCHHHHHHHHcccccchHHHHHHH
Confidence 444455 6678888888877778888844433
No 393
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.42 E-value=3 Score=45.77 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=40.2
Q ss_pred CCCceEEEEcCCeEEEEEcC-CCceeEEEecCCCccceE-EEEEcCCCCEEEEEecCCcEEEEeccCCc
Q 000707 264 HWRHIIFVTFPRELVVFDLQ-YETPLFSAALPRGCAKFL-DVLADPNNDLLYCAHLDGKLSIWRRKEGE 330 (1341)
Q Consensus 264 dg~~l~~~~~d~~I~iwDl~-t~~~l~~~~l~~~~~~~~-~v~~~pdg~~L~s~~~DgtI~lW~~~~g~ 330 (1341)
-++.++.++.++.|.+|... .|...-.+. .+...+. .+....++.+..++..||.||.|+.+.+.
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~--s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k 135 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVC--SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK 135 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhh--cccccceeccccccccceeEEeccCCceeeeccccCc
Confidence 35678889999999999887 222111111 0111111 12122345578889999999999998665
No 394
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=84.18 E-value=44 Score=38.05 Aligned_cols=150 Identities=14% Similarity=0.069 Sum_probs=81.5
Q ss_pred ccCCCCCCC--CCCceEeCCCC-eEEEEc--C--CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCc
Q 000707 17 MLPGPPSRN--NFGSADLSPSG-LLAFAS--G--SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLR 89 (1341)
Q Consensus 17 ~lpg~~~~~--~~~a~~~s~~g-llA~gs--~--~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~ 89 (1341)
.+||+.... +..++++|++| .+|+-. + ..+.++... +.....+.+. .++.-.|+++
T Consensus 14 pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~-~~~~~~~~g~-------------~l~~PS~d~~--- 76 (253)
T PF10647_consen 14 PVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG-GPVRPVLTGG-------------SLTRPSWDPD--- 76 (253)
T ss_pred ECCCCcCcCCccccceEECCCCCeEEEEEEcCCCCEEEEEcCC-CcceeeccCC-------------ccccccccCC---
Confidence 466765542 57899999998 777654 3 455666543 2222223322 4566677765
Q ss_pred cccCCCCCCCCCcEEEEEeCCCcEEEEe-CCCCeE-EEEecCCCCCCCCeeEEEEeecCCCccEEEEE--eCCCeEEEEE
Q 000707 90 CDLLSTEPGSSHLLLAAADRHGRVALLD-FRLRSV-VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI--NGPSVLSLYN 165 (1341)
Q Consensus 90 ~~~~s~~~~p~g~~LASg~~dG~I~vWD-v~tg~~-~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~--s~d~~i~lWd 165 (1341)
|...+....++..+++. ..+|.. ...+....-.+ .|..+.+|||+. ++.+.. .+++.|.+=-
T Consensus 77 -----------g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~-~I~~l~vSpDG~--RvA~v~~~~~~~~v~va~ 142 (253)
T PF10647_consen 77 -----------GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG-RITALRVSPDGT--RVAVVVEDGGGGRVYVAG 142 (253)
T ss_pred -----------CCEEEEEcCCCceEEEEecCCCcceeEEecccccCC-ceEEEEECCCCc--EEEEEEecCCCCeEEEEE
Confidence 45666666677777773 344432 22322333333 799999999982 333333 2345666554
Q ss_pred CC---CC--e----EEEEEeCCCCceEEEEEcCCCCCEEEEE
Q 000707 166 TT---SA--S----CMWKYDASPEYLSCIRRNPFDARHFCVL 198 (1341)
Q Consensus 166 ~~---tg--~----~i~~~~~~~~~v~~~~fsP~d~~~la~~ 198 (1341)
+. .| . ++.........+..++|.+ +.+.++..
T Consensus 143 V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~ 183 (253)
T PF10647_consen 143 VVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DSTLVVLG 183 (253)
T ss_pred EEeCCCCCcceeccceEecccccCcceeeeecC-CCEEEEEe
Confidence 32 33 1 1111112235677888887 44444333
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=83.95 E-value=1.1e+02 Score=37.26 Aligned_cols=179 Identities=15% Similarity=0.108 Sum_probs=80.9
Q ss_pred CCCcEEEEE--eC----CCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe----------------
Q 000707 99 SSHLLLAAA--DR----HGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN---------------- 156 (1341)
Q Consensus 99 p~g~~LASg--~~----dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s---------------- 156 (1341)
|+|..++|+ +. -|-+.+-|-.+.++....+.......--.++-|.|-. ++++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~---nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRH---NVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTT---TEEEE-B---HHHHTT---TTTH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCC---CEEEEeccCChhhcccCCChhHh
Confidence 567778776 22 2567788888777776655432211134667777755 5666653
Q ss_pred ----CCCeEEEEECCCCeEEEEEeCCCC--ceEEEEEc--CCCCCEEEEEeCCCeEEEEEecCCcccceeeee-EEEec-
Q 000707 157 ----GPSVLSLYNTTSASCMWKYDASPE--YLSCIRRN--PFDARHFCVLGLKGLLLSVRVLGQKEDEVVVKE-LQIQT- 226 (1341)
Q Consensus 157 ----~d~~i~lWd~~tg~~i~~~~~~~~--~v~~~~fs--P~d~~~la~~~~dG~i~~~d~~~~~~~~~~~k~-~~i~~- 226 (1341)
--++|.+||..+.+.+.+++.+.+ ....++|- |....-++.+-..+.|..|--..+ .....++ ..|..
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~--g~W~a~kVi~ip~~ 293 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD--GEWAAEKVIDIPAK 293 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET--TEEEEEEEEEE--E
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC--CCeeeeEEEECCCc
Confidence 126899999999999999887654 34466774 423334554445566655532111 1111111 11110
Q ss_pred --CcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCC---ceeEEEec
Q 000707 227 --DCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYE---TPLFSAAL 293 (1341)
Q Consensus 227 --~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~---~~l~~~~l 293 (1341)
..-.+..+-+. ....|.-+..+..|.|.|.|.... .+|+|+-||+... +.++.+.+
T Consensus 294 ~v~~~~lp~ml~~-----------~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~l 355 (461)
T PF05694_consen 294 KVEGWILPEMLKP-----------FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFL 355 (461)
T ss_dssp E--SS---GGGGG-----------G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-
T ss_pred ccCcccccccccc-----------cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEE
Confidence 00001111000 011234567788999999887777 5899999999874 33444443
No 396
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=15 Score=46.75 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHH---------HHHHHHHccCCcchhh
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKV---------VAANMVRNDRSLSGTH 1185 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~---------~a~~l~~~~~~~~~v~ 1185 (1341)
+.-+.+++..||..+|-++==+--=-+.+|| |||.-+||..---+-+++..|. -.+-.+..|+..+|-.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~FkipdKr~~--wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKIPDKRLW--WLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCCcchhhH--HHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhh
Confidence 3446778899999999996555443344555 6777677766432222111111 1233566777788888
Q ss_pred HHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHH
Q 000707 1186 LLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQR 1228 (1341)
Q Consensus 1186 ~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r 1228 (1341)
|.-.++...|-++....-|..+||+.+|..+=.+.+..+++.+
T Consensus 766 Yiprv~~l~ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 766 YIPRVGGLQEKVKAYLRVGDVKEAADLAAEHRDGAELSEVLSK 808 (829)
T ss_pred hhhccCChHHHHHHHHHhccHHHHHHHHHHhcChHHHHHHHHh
Confidence 8888888888888888888888888888888766666666654
No 397
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=82.20 E-value=14 Score=47.04 Aligned_cols=123 Identities=17% Similarity=0.132 Sum_probs=77.8
Q ss_pred cccccccCCCCCCCCCCceEeCCCCeEEE--EcCCeEEEEeCCCcceeE--eecCCCCCCCCCCCCCCCcEEEEEEccCC
Q 000707 12 WDCNFMLPGPPSRNNFGSADLSPSGLLAF--ASGSSISILDSRSLQLIS--TIPIPPPTSAGSVASLSPFVTAVKWIPIT 87 (1341)
Q Consensus 12 ~~~~~~lpg~~~~~~~~a~~~s~~gllA~--gs~~~V~v~d~~~~~~~~--~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~ 87 (1341)
|-+-.++.-. ..+..-+.-|.-+.+|. .++..+.|||.+.+++-. +++.+. .|..+.|...
T Consensus 19 w~~t~~~~T~--i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~------------~I~dLDWtst- 83 (631)
T PF12234_consen 19 WLLTSTFETG--ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDD------------PIRDLDWTST- 83 (631)
T ss_pred EEEEEEEecC--CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCC------------ceeeceeeec-
Confidence 6664333332 23445565655564443 345789999999887533 332233 7999999864
Q ss_pred CccccCCCCCCCCCcEEEEEeCCCcEEEEeCC-----C----CeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCC
Q 000707 88 LRCDLLSTEPGSSHLLLAAADRHGRVALLDFR-----L----RSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGP 158 (1341)
Q Consensus 88 ~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~-----t----g~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d 158 (1341)
|+|+.+.+-+....|.|+--. . -..+..+.+.+++..+|.+.+|.++| .+ ++++ .
T Consensus 84 -----------~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G---~L-vV~s-G 147 (631)
T PF12234_consen 84 -----------PDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG---TL-VVGS-G 147 (631)
T ss_pred -----------CCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC---eE-EEEe-C
Confidence 678888888889999988531 1 13455655666664499999999987 44 4343 2
Q ss_pred CeEEEEE
Q 000707 159 SVLSLYN 165 (1341)
Q Consensus 159 ~~i~lWd 165 (1341)
+.+.|+|
T Consensus 148 Nqlfv~d 154 (631)
T PF12234_consen 148 NQLFVFD 154 (631)
T ss_pred CEEEEEC
Confidence 4454444
No 398
>PHA02713 hypothetical protein; Provisional
Probab=82.20 E-value=33 Score=43.82 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=22.7
Q ss_pred EEEeecCCEEEEEeCCC--cEEEEECCCCc
Q 000707 759 TAMAYRLPHVVMGDRSG--NIRWWDVTTGH 786 (1341)
Q Consensus 759 ~sla~dg~~LasGs~Dg--tI~lWDl~tg~ 786 (1341)
...+.+|+..+.|+.|| ++..+|+.+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 34455999999999998 88889998876
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.17 E-value=1.2e+02 Score=40.22 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=42.3
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEEEeCCCCc--------eEEEEEc--C-------------CCCCEEEEEeCCCeEEE
Q 000707 150 FVLAAINGPSVLSLYNTTSASCMWKYDASPEY--------LSCIRRN--P-------------FDARHFCVLGLKGLLLS 206 (1341)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~--------v~~~~fs--P-------------~d~~~la~~~~dG~i~~ 206 (1341)
..|..++.++.|.--|..||+.+|+++..... ...+++- | -...++.+++.||.++.
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 46666777899999999999999998753211 0112221 1 13357888888999999
Q ss_pred EEecC
Q 000707 207 VRVLG 211 (1341)
Q Consensus 207 ~d~~~ 211 (1341)
.|...
T Consensus 275 LDA~T 279 (764)
T TIGR03074 275 LDADT 279 (764)
T ss_pred EECCC
Confidence 88644
No 400
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=81.70 E-value=35 Score=39.90 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=78.3
Q ss_pred ccccccccCCCCCCCCCCceEeCCCC-eEEEEcCCeE-EEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCC
Q 000707 11 SWDCNFMLPGPPSRNNFGSADLSPSG-LLAFASGSSI-SILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITL 88 (1341)
Q Consensus 11 ~~~~~~~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V-~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~ 88 (1341)
+|.. ...+.. ..+..+.-+++| ++|.++.+.+ .-||+-...- +....... -+|.++.|+|++
T Consensus 135 tW~~--~~~~~~--gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~----------~riq~~gf~~~~- 198 (302)
T PF14870_consen 135 TWQA--VVSETS--GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSS----------RRIQSMGFSPDG- 198 (302)
T ss_dssp SEEE--EE-S------EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SS----------S-EEEEEE-TTS-
T ss_pred CeeE--cccCCc--ceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCcc----------ceehhceecCCC-
Confidence 4765 444332 235667778998 7878876655 4677643211 11112121 289999999874
Q ss_pred ccccCCCCCCCCCcEEEEEeCCCcEEEEe-CCCCeEEEEecCCC-CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEEC
Q 000707 89 RCDLLSTEPGSSHLLLAAADRHGRVALLD-FRLRSVVLWIDPDP-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNT 166 (1341)
Q Consensus 89 ~~~~~s~~~~p~g~~LASg~~dG~I~vWD-v~tg~~~~~l~~~~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~ 166 (1341)
.+.. ..+.|.|+.=| ...++....-..+. ..+..+.+++|.+++ .+.|+++ .++| +...
T Consensus 199 -------------~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~---~~wa~gg-~G~l-~~S~ 259 (302)
T PF14870_consen 199 -------------NLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN---EIWAVGG-SGTL-LVST 259 (302)
T ss_dssp --------------EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS----EEEEES-TT-E-EEES
T ss_pred -------------CEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC---CEEEEeC-CccE-EEeC
Confidence 3333 33889998888 33333322210111 123368999999865 6667555 4443 3444
Q ss_pred CCCeEEEEEeCC----CCceEEEEEcCCCCCEEEEEeCCCeEEEE
Q 000707 167 TSASCMWKYDAS----PEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1341)
Q Consensus 167 ~tg~~i~~~~~~----~~~v~~~~fsP~d~~~la~~~~dG~i~~~ 207 (1341)
+.|+ -|+.+.. +..+..+.|.+ +.+-.+.|.+|.++-|
T Consensus 260 DgGk-tW~~~~~~~~~~~n~~~i~f~~--~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGK-TWQKDRVGENVPSNLYRIVFVN--PDKGFVLGQDGVLLRY 301 (302)
T ss_dssp STTS-S-EE-GGGTTSSS---EEEEEE--TTEEEEE-STTEEEEE
T ss_pred CCCc-cceECccccCCCCceEEEEEcC--CCceEEECCCcEEEEe
Confidence 4454 4655422 34677888864 3666677778888754
No 401
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=80.52 E-value=76 Score=40.68 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCeEEEEecCCc-----EEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCC------cEEEEECCCC
Q 000707 717 SESFAFALANGA-----LGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSG------NIRWWDVTTG 785 (1341)
Q Consensus 717 ~e~la~~~~Dg~-----I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~Dg------tI~lWDl~tg 785 (1341)
+...|+|+.||. +..||...++-... .. +..........+++|..-++|+.|+ ++..+|..+.
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~v-a~-----m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPV-AP-----MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCccccc-CC-----CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 456778888764 45566655443211 10 1011112334445999999998655 5678999887
Q ss_pred cee---eeccCCCcEEEEEEccCCCCCCCCCEEEEEECCC-----eEEEEECCCCC
Q 000707 786 HSS---QFSTHREGIRRIKFSPVVPGDRSRGRIAVLFHDN-----TFSVFDLDSQD 833 (1341)
Q Consensus 786 ~~~---~l~gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dg-----tI~IWDl~~~~ 833 (1341)
+-+ .+..-+.... ++.--+ ...++|+.|+ +|..+|..+.+
T Consensus 455 ~W~~~~~M~~~R~~~g-~a~~~~-------~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 455 TWTLIAPMNTRRSGFG-VAVLNG-------KIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred ceeecCCcccccccce-EEEECC-------EEEEECCccCCCccceEEEEcCCCCc
Confidence 632 3322222222 332222 4556777665 37888887765
No 402
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.29 E-value=22 Score=43.44 Aligned_cols=107 Identities=12% Similarity=0.217 Sum_probs=69.9
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccC-CceeeeEEec
Q 000707 531 LVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRS-GINRAFRVLQ 609 (1341)
Q Consensus 531 llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~t-G~~~~l~~l~ 609 (1341)
++.+|..-..++=-|++.|+++.++..|.. |+-+.+.|++.+.=.-...+ ..|..+|.|.=||.|- |.. .+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~T--lvGLs~n~vfriDpRv~~~~-kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQT--LVGLSDNSVFRIDPRVQGKN-KLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhccccccc--EEeecCCceEEecccccCcc-eeeeee
Confidence 344555556788889999999999999887 66677777763211111111 2477788999999863 322 222222
Q ss_pred cC---CCCCeEEEEECCCCCEEEEEECCCcEEEEec
Q 000707 610 KP---ERAPIRALRASSSGRYLLILFRDAPVEVWAM 642 (1341)
Q Consensus 610 ~~---~~~~I~~i~~SpdG~~Las~s~D~~I~vWDl 642 (1341)
++ ......|++...+| |+|+||.+|-||+||-
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr 458 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR 458 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh
Confidence 21 12345566666666 7889999999999994
No 403
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.27 E-value=23 Score=36.03 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=66.6
Q ss_pred CcEEEEEeCCCcEEEEeCCCC--------eEEEEecCCCCCCCCeeEEEEeecCC--CccEEEEEeCCCeEEEEECCCCe
Q 000707 101 HLLLAAADRHGRVALLDFRLR--------SVVLWIDPDPNPKLGIQDLCWIVSKP--DSFVLAAINGPSVLSLYNTTSAS 170 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~tg--------~~~~~l~~~~h~~~~V~~l~wsp~~~--~~~lLas~s~d~~i~lWd~~tg~ 170 (1341)
..-|+.+...|+|.|.+.... ..++.|.+ .+ .|.+|+-.+-.+ +.+.|+.++ ...|..||+....
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~-~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~ 84 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQ-EITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNS 84 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CC-ceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCc
Confidence 356888889999999997533 23344433 23 788887666432 226777666 6788899998776
Q ss_pred EEEEEeCCCCceEEEEEcCCC--CCEEEEEeCCCeEEEEEec
Q 000707 171 CMWKYDASPEYLSCIRRNPFD--ARHFCVLGLKGLLLSVRVL 210 (1341)
Q Consensus 171 ~i~~~~~~~~~v~~~~fsP~d--~~~la~~~~dG~i~~~d~~ 210 (1341)
-+.-.+. ++.++++.+-.+. ...++..|....|.-+|..
T Consensus 85 d~Fyke~-~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 85 DLFYKEV-PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred hhhhhhC-ccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 5554555 5677777774332 2455555555666665543
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=80.06 E-value=48 Score=42.91 Aligned_cols=176 Identities=12% Similarity=0.071 Sum_probs=95.9
Q ss_pred ccCCCCCCCCCCceEeCCCCeEEEEcCCeEEEEeCCCcceeE----eecCCCCC-------CCCCCCCCCCcEEEEEEcc
Q 000707 17 MLPGPPSRNNFGSADLSPSGLLAFASGSSISILDSRSLQLIS----TIPIPPPT-------SAGSVASLSPFVTAVKWIP 85 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~gllA~gs~~~V~v~d~~~~~~~~----~l~~H~~~-------~~~~~~~~~~~Vt~v~~sp 85 (1341)
.+++..-++|..|+- ...++..+.++.|.||++......- .+.....+ ..+......+.|+.++..-
T Consensus 33 ~l~~~gfKNNLtals--q~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~ 110 (717)
T PF08728_consen 33 QLQGLGFKNNLTALS--QRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGD 110 (717)
T ss_pred ceeccccccceeEEe--cCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecc
Confidence 343433445544433 2346777888999999986532211 01111110 0111122344566665443
Q ss_pred CCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC-------C----eE-E------EEecCCCCCCCCeeEEEEeecCC
Q 000707 86 ITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL-------R----SV-V------LWIDPDPNPKLGIQDLCWIVSKP 147 (1341)
Q Consensus 86 ~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t-------g----~~-~------~~l~~~~h~~~~V~~l~wsp~~~ 147 (1341)
- .+...|+.|.+||.|.+|.+.+ . .. . --|... -.. ...+|++.-. +
T Consensus 111 l------------g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~-SaWGLdIh~~-~ 175 (717)
T PF08728_consen 111 L------------GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGA-SAWGLDIHDY-K 175 (717)
T ss_pred c------------CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCC-ceeEEEEEec-C
Confidence 2 2457899999999999997621 0 00 0 001011 112 5667776611 1
Q ss_pred CccEEEEEeCCCeEEEEECCC--CeEEEEEe-CCCCceEEEEEcCCC--CC---EEEEEeCCCeEEEEEe
Q 000707 148 DSFVLAAINGPSVLSLYNTTS--ASCMWKYD-ASPEYLSCIRRNPFD--AR---HFCVLGLKGLLLSVRV 209 (1341)
Q Consensus 148 ~~~lLas~s~d~~i~lWd~~t--g~~i~~~~-~~~~~v~~~~fsP~d--~~---~la~~~~dG~i~~~d~ 209 (1341)
..++||+++....|.||-... .+...... .+..+|.||+|-+.+ +. .|++++-.|.+.+|++
T Consensus 176 ~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 176 KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 238999999888888875432 22111111 124578899997753 23 7778888899988876
No 405
>PHA03098 kelch-like protein; Provisional
Probab=79.90 E-value=82 Score=39.90 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=50.2
Q ss_pred CCEEEEEeCCC------cEEEEeCCCCcEEEE--EeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCC
Q 000707 529 VPLVALGTQSG------AVDVVDVSANAVTAS--FSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSG 600 (1341)
Q Consensus 529 ~~llAsGs~DG------tI~lWDl~tg~~~~~--l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG 600 (1341)
+.+++.|+.++ .+..||..+++-... +...... .++... ++++..++... .+..-+.+..||..++
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~~-~~~lyv~GG~~----~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKN-PGVTVF-NNRIYVIGGIY----NSISLNTVESWKPGES 368 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCccccc-ceEEEE-CCEEEEEeCCC----CCEecceEEEEcCCCC
Confidence 45667776543 577889887764321 1100011 112222 44554444321 1122356888998877
Q ss_pred ceeeeEEeccCCCCCeEEEEECCCCCEEEEEECC------CcEEEEec
Q 000707 601 INRAFRVLQKPERAPIRALRASSSGRYLLILFRD------APVEVWAM 642 (1341)
Q Consensus 601 ~~~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D------~~I~vWDl 642 (1341)
+......+..+. .. .....-+|++.+.|+.+ +.+..||.
T Consensus 369 ~W~~~~~lp~~r-~~--~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 369 KWREEPPLIFPR-YN--PCVVNVNNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred ceeeCCCcCcCC-cc--ceEEEECCEEEEECCcCCCCcccceEEEEeC
Confidence 643322221111 11 11222356777777632 34677776
No 406
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.11 E-value=54 Score=33.48 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=73.3
Q ss_pred eEEEEcCCeEEEEeCCCc--------ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEe
Q 000707 37 LLAFASGSSISILDSRSL--------QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD 108 (1341)
Q Consensus 37 llA~gs~~~V~v~d~~~~--------~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~ 108 (1341)
|.+....+.|.|.+|... ..++.|..-+ .|++++=.|-. ++.....|..|+
T Consensus 13 L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------------~italaaG~l~---------~~~~~D~LliGt 71 (136)
T PF14781_consen 13 LACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------------EITALAAGRLK---------PDDGRDCLLIGT 71 (136)
T ss_pred EEEEecCCEEEEECCCccccccccccCceeEEECCC------------ceEEEEEEecC---------CCCCcCEEEEec
Confidence 444456789999998643 2455666555 57777544421 112345566666
Q ss_pred CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC
Q 000707 109 RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA 177 (1341)
Q Consensus 109 ~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~ 177 (1341)
. -.+..+|+....-+-. ++-+. +|+++.+-.-+....-|+..+++..|.-+|....+..|+.++
T Consensus 72 ~-t~llaYDV~~N~d~Fy---ke~~D-Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 72 Q-TSLLAYDVENNSDLFY---KEVPD-GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred c-ceEEEEEcccCchhhh---hhCcc-ceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
Confidence 4 4688999987654432 22335 788888865544234556666788999999887788888764
No 407
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=79.04 E-value=18 Score=44.11 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=48.6
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCC----------------ccEEEEEeC--CC
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPD----------------SFVLAAING--PS 159 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~----------------~~lLas~s~--d~ 159 (1341)
+|++.+.|..|.=|+|.|+|+.++..++.+ +|-.. -.+.|..-... ..++.+... -|
T Consensus 316 sP~~~laA~tDslGRV~LiD~~~~~vvrmW--KGYRd---Aqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg 390 (415)
T PF14655_consen 316 SPSGRLAAVTDSLGRVLLIDVARGIVVRMW--KGYRD---AQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG 390 (415)
T ss_pred CCCCCEEEEEcCCCcEEEEECCCChhhhhh--ccCcc---ceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence 456788999888899999999999877764 33332 22344322111 123444443 48
Q ss_pred eEEEEECCCCeEEEEEe
Q 000707 160 VLSLYNTTSASCMWKYD 176 (1341)
Q Consensus 160 ~i~lWd~~tg~~i~~~~ 176 (1341)
.|.||++++|.++..+.
T Consensus 391 ~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 391 ILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eEEEEecCCCCEEEEEE
Confidence 99999999998876543
No 408
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.00 E-value=98 Score=37.76 Aligned_cols=142 Identities=20% Similarity=0.216 Sum_probs=79.7
Q ss_pred ceEeCCCC-eEEEEcCCeEEE-EeCCCcce-eEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEE
Q 000707 29 SADLSPSG-LLAFASGSSISI-LDSRSLQL-ISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLA 105 (1341)
Q Consensus 29 a~~~s~~g-llA~gs~~~V~v-~d~~~~~~-~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LA 105 (1341)
.+.-+++| ++++|..+.+.. ||. ++. -+.+..+.. ..++++.|.+++ .+++
T Consensus 243 ~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~----------~~l~~v~~~~dg--------------~l~l 296 (398)
T PLN00033 243 TVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASA----------RRIQNMGWRADG--------------GLWL 296 (398)
T ss_pred eEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCc----------cceeeeeEcCCC--------------CEEE
Confidence 45667888 889998766543 443 222 122222222 268999998764 4454
Q ss_pred EEeCCCcEEEEeCCCCeE-----EEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC---
Q 000707 106 AADRHGRVALLDFRLRSV-----VLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA--- 177 (1341)
Q Consensus 106 Sg~~dG~I~vWDv~tg~~-----~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~--- 177 (1341)
.+ .+|.+ +|....|.. ....... .....+.++.|.+++ .+++ ++..|.+.... +.| .-|+...
T Consensus 297 ~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~-~~~~~l~~v~~~~d~---~~~a-~G~~G~v~~s~-D~G-~tW~~~~~~~ 367 (398)
T PLN00033 297 LT-RGGGL-YVSKGTGLTEEDFDFEEADIK-SRGFGILDVGYRSKK---EAWA-AGGSGILLRST-DGG-KSWKRDKGAD 367 (398)
T ss_pred Ee-CCceE-EEecCCCCcccccceeecccC-CCCcceEEEEEcCCC---cEEE-EECCCcEEEeC-CCC-cceeEccccC
Confidence 44 56665 666666642 2222111 112258999998765 5555 44566655443 334 3455432
Q ss_pred -CCCceEEEEEcCCCCCEEEEEeCCCeEEEE
Q 000707 178 -SPEYLSCIRRNPFDARHFCVLGLKGLLLSV 207 (1341)
Q Consensus 178 -~~~~v~~~~fsP~d~~~la~~~~dG~i~~~ 207 (1341)
-..++..+.|.+ + .+..+.|.+|.|+-+
T Consensus 368 ~~~~~ly~v~f~~-~-~~g~~~G~~G~il~~ 396 (398)
T PLN00033 368 NIAANLYSVKFFD-D-KKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCcceeEEEEcC-C-CceEEEeCCcEEEEe
Confidence 134677888865 3 555566677887654
No 409
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=77.15 E-value=19 Score=47.24 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCHHHHHHHhhc---CCCC-CchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcc------hh
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLS---TSPE-SSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLS------GT 1184 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~---~~pe-~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~------~v 1184 (1341)
..++.-+...|+.++|++++-+ .+++ +..-|.-.++||+-. +..+...++.+ .++..|...+ =+
T Consensus 193 n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~-----~~~~~~~~l~~-~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL-----GSARAGQQLHC-CVLKTGVVGDTFVSCALI 266 (697)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC-----CcHHHHHHHHH-HHHHhCCCccceeHHHHH
Confidence 4577888888999999996543 3322 223344455554322 22333323322 2333333221 24
Q ss_pred hHHHhcCcHHHHHHHhh------------------ccCcHHHHHHHHH
Q 000707 1185 HLLCAVGRYQEACSQLQ------------------DAGCWTDAATLAA 1214 (1341)
Q Consensus 1185 ~~~~~~g~~~~a~~~l~------------------~~~~w~~a~~la~ 1214 (1341)
..|+++|++++|.+.+. ..|++++|+.+=+
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67888888888777654 3677777776653
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.07 E-value=1.1e+02 Score=35.40 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCCCCceEeCCCC--eEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCC
Q 000707 24 RNNFGSADLSPSG--LLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSH 101 (1341)
Q Consensus 24 ~~~~~a~~~s~~g--llA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g 101 (1341)
..|+.++.|+|+. |++......-.|+=...|+++.+++..-- +.-..+.|.-+ |
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~----------~DpE~Ieyig~--------------n 140 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF----------SDPETIEYIGG--------------N 140 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc----------CChhHeEEecC--------------C
Confidence 4568999999986 77777665555666678999888654221 01224555533 4
Q ss_pred cEEEEEeCCCcEEEEeCCCCeEEE-----EecC--CCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCe-EE-
Q 000707 102 LLLAAADRHGRVALLDFRLRSVVL-----WIDP--DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS-CM- 172 (1341)
Q Consensus 102 ~~LASg~~dG~I~vWDv~tg~~~~-----~l~~--~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~-~i- 172 (1341)
.+.++--+++++.+.-+.....+. .+++ ..+.+.+-.+++|.|.+ +.|..+-+.+-+.|+.+..+. .+
T Consensus 141 ~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~---~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 141 QFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD---HRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred EEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC---ceEEEEEccCCcEEEEEecCCcccc
Confidence 566666667777766654432111 2222 22322278899999976 566666666667776654222 11
Q ss_pred -EEEeCC-------CCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCC
Q 000707 173 -WKYDAS-------PEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ 212 (1341)
Q Consensus 173 -~~~~~~-------~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~ 212 (1341)
.....+ -..++.+.|++-.+..++.+-.++.+.-.|..+.
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 100110 1245788899866666666655677777766553
No 411
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.25 E-value=35 Score=41.93 Aligned_cols=98 Identities=15% Similarity=0.284 Sum_probs=62.4
Q ss_pred EEEEecCCcEEEEEec--CC-eeecccCCCCCCccccccceEEEEee-cCCEEEEEeCCCcEEEEECCCCc-e-eeeccC
Q 000707 720 FAFALANGALGVFEVH--GR-RIRDFRPKWPSSSFISSDGLITAMAY-RLPHVVMGDRSGNIRWWDVTTGH-S-SQFSTH 793 (1341)
Q Consensus 720 la~~~~Dg~I~vwdv~--~~-~v~~~~~~~~~~~l~~~~~~v~sla~-dg~~LasGs~DgtI~lWDl~tg~-~-~~l~gH 793 (1341)
-..|..|+.|.-||.+ ++ .+. +. .+..+... ....|++- ..-+||.||.+|-||+||- .+. - .-|+|-
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~-~~---q~kqy~~k-~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL 470 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLA-VV---QSKQYSTK-NNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL 470 (644)
T ss_pred cEEeecCCceEEecccccCcceee-ee---eccccccc-cccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc
Confidence 3567888999999973 33 210 00 00001111 12456666 2338999999999999998 444 3 347999
Q ss_pred CCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECC
Q 000707 794 REGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLD 830 (1341)
Q Consensus 794 ~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~ 830 (1341)
..+|..|..+.+ | +.| .+..+..+.+-|+.
T Consensus 471 G~~I~hVdvtad--G----Kwi-l~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 471 GDAIKHVDVTAD--G----KWI-LATCKTYLLLIDTL 500 (644)
T ss_pred CCceeeEEeecc--C----cEE-EEecccEEEEEEEe
Confidence 999999999988 4 443 34457777776653
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=74.41 E-value=7.7 Score=31.36 Aligned_cols=34 Identities=29% Similarity=0.361 Sum_probs=26.4
Q ss_pred CcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCC
Q 000707 795 EGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDS 831 (1341)
Q Consensus 795 ~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~ 831 (1341)
|.|++++|||...+ ...|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~---~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG---NDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCc---ccEEEEEccCCeEEEEEccc
Confidence 57999999987321 14677777788999999985
No 413
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=72.28 E-value=19 Score=40.10 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=46.7
Q ss_pred EEEEeecCCEEEEEeCCCcEEEEECCCCce--ee------ec-------cCCCcEEEEEEccCCCCCCCCCEEEEEECCC
Q 000707 758 ITAMAYRLPHVVMGDRSGNIRWWDVTTGHS--SQ------FS-------THREGIRRIKFSPVVPGDRSRGRIAVLFHDN 822 (1341)
Q Consensus 758 v~sla~dg~~LasGs~DgtI~lWDl~tg~~--~~------l~-------gH~~~V~~V~fSP~~~gd~~~~~Las~s~Dg 822 (1341)
+..+..++++|.+-..+|.+++||+.+++. .. +. .....|..+.++.. |..++...+|
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~-------G~PiV~lsng 87 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN-------GVPIVTLSNG 87 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC-------CCEEEEEeCC
Confidence 555666899999999999999999998762 11 22 35567777777755 3444444556
Q ss_pred eEEEEECCC
Q 000707 823 TFSVFDLDS 831 (1341)
Q Consensus 823 tI~IWDl~~ 831 (1341)
....||.+-
T Consensus 88 ~~y~y~~~L 96 (219)
T PF07569_consen 88 DSYSYSPDL 96 (219)
T ss_pred CEEEecccc
Confidence 777777543
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=71.89 E-value=9.7 Score=30.80 Aligned_cols=34 Identities=35% Similarity=0.401 Sum_probs=27.3
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR 121 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg 121 (1341)
.|.+++|||++.. ..+||-+-..|.|-|+|++++
T Consensus 2 AvR~~kFsP~~~~-----------~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 2 AVRCCKFSPEPGG-----------NDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CeEEEEeCCCCCc-----------ccEEEEEccCCeEEEEEcccC
Confidence 5889999987522 267888888999999999853
No 415
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=71.59 E-value=1.8e+02 Score=32.63 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=35.3
Q ss_pred EeecCCEEEEEeCCCcEEEEECCCCc-eeeeccCCCcEEEEEEc
Q 000707 761 MAYRLPHVVMGDRSGNIRWWDVTTGH-SSQFSTHREGIRRIKFS 803 (1341)
Q Consensus 761 la~dg~~LasGs~DgtI~lWDl~tg~-~~~l~gH~~~V~~V~fS 803 (1341)
|.-+|.+.++.=..|+|.-.|..+|+ +..+.-.+..|++++|-
T Consensus 219 ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 219 IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 33378888888888999999999998 56666668899999996
No 416
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.41 E-value=19 Score=41.35 Aligned_cols=28 Identities=21% Similarity=0.449 Sum_probs=21.4
Q ss_pred HHHHcCCHHHHHH---HhhcCCCCCchhHHH
Q 000707 1120 ELVSVGNLEAAVS---LLLSTSPESSYFYAN 1147 (1341)
Q Consensus 1120 ~~~~lG~~~~av~---lLl~~~pe~~~~~~~ 1147 (1341)
.+.+.++.++||+ -.|+..|.|.-||++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycN 120 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCN 120 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHH
Confidence 4555677888888 578888888888874
No 417
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=69.96 E-value=84 Score=35.77 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=64.0
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEe-CCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEE
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD-RHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~-~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1341)
.+.+.++||++ ..+|... .++.-.||-...+.....+ ..+ . .+..-.|.+++ .+.++.
T Consensus 25 ~~~s~AvS~dg--------------~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~-~l~~PS~d~~g---~~W~v~ 83 (253)
T PF10647_consen 25 DVTSPAVSPDG--------------SRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--G-SLTRPSWDPDG---WVWTVD 83 (253)
T ss_pred cccceEECCCC--------------CeEEEEEEcCCCCEEEEEcCCCcceee-ccC--C-ccccccccCCC---CEEEEE
Confidence 57888999874 4454433 3333344444334333332 122 2 56667898876 777777
Q ss_pred eCCCeEEEEE-CCCCeEE-EEEeCC--CCceEEEEEcCCCCCEEEEEeC---CCeEEEE
Q 000707 156 NGPSVLSLYN-TTSASCM-WKYDAS--PEYLSCIRRNPFDARHFCVLGL---KGLLLSV 207 (1341)
Q Consensus 156 s~d~~i~lWd-~~tg~~i-~~~~~~--~~~v~~~~fsP~d~~~la~~~~---dG~i~~~ 207 (1341)
..+...+++. ..+|+.. ...... ...|..|+++| |+.++|+... ++.|++-
T Consensus 84 ~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va 141 (253)
T PF10647_consen 84 DGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVA 141 (253)
T ss_pred cCCCceEEEEecCCCcceeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEE
Confidence 7777777773 3344321 122221 12799999999 9999998862 4666653
No 418
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.16 E-value=1.1e+02 Score=35.24 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred CCCEEEEEe-----CCCcEEEEeCCCC-cEEEEEeecCCCeEEEEEcCCCcEEEEecCCcc---------cccCcccCeE
Q 000707 528 AVPLVALGT-----QSGAVDVVDVSAN-AVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVN---------EKSGGYINRL 592 (1341)
Q Consensus 528 ~~~llAsGs-----~DGtI~lWDl~tg-~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~---------~~sg~~~~~i 592 (1341)
+|.+|...- .-|.|-|||...+ +.+.++..|--.-..+.|.+||+.+..+..... .+...-.-.+
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSl 203 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSL 203 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccE
Confidence 577775432 2378999999755 345678888766678899999988876653110 0001112346
Q ss_pred EEEEccCCceeeeEEecc-CCCCCeEEEEECCCCCEEEEE
Q 000707 593 VVTCLRSGINRAFRVLQK-PERAPIRALRASSSGRYLLIL 631 (1341)
Q Consensus 593 ~lwD~~tG~~~~l~~l~~-~~~~~I~~i~~SpdG~~Las~ 631 (1341)
.+.|..+|......++.. .+.-.|+.++..+||+.++-+
T Consensus 204 vlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 204 VLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred EEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 677777777322222220 022357777777877766544
No 419
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=67.64 E-value=90 Score=40.81 Aligned_cols=31 Identities=16% Similarity=0.108 Sum_probs=18.4
Q ss_pred HHHHHHHHHcCCHHHHHH---HhhcCCCCCchhH
Q 000707 1115 QNRVHELVSVGNLEAAVS---LLLSTSPESSYFY 1145 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~ 1145 (1341)
..++..+...|+.++|++ -++...|+++..+
T Consensus 148 ~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~ 181 (656)
T PRK15174 148 ALHLRTLVLMDKELQAISLARTQAQEVPPRGDMI 181 (656)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHH
Confidence 455666677777777766 2445566654433
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=67.35 E-value=1.2e+02 Score=36.65 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=13.0
Q ss_pred CeeEEEEeecCCCccEEEEEe
Q 000707 136 GIQDLCWIVSKPDSFVLAAIN 156 (1341)
Q Consensus 136 ~V~~l~wsp~~~~~~lLas~s 156 (1341)
....++|.|++ .+.++.+
T Consensus 125 ~~~~l~~gpDG---~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDG---WLYFNHG 142 (367)
T ss_pred cccCceECCCC---CEEEecc
Confidence 57889999987 6655544
No 421
>PHA03098 kelch-like protein; Provisional
Probab=66.77 E-value=2.5e+02 Score=35.48 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=29.9
Q ss_pred CcEEEEEecCCeeecccCCCCCCccccccceEEEEeecCCEEEEEeCCC--------cEEEEECCCCce
Q 000707 727 GALGVFEVHGRRIRDFRPKWPSSSFISSDGLITAMAYRLPHVVMGDRSG--------NIRWWDVTTGHS 787 (1341)
Q Consensus 727 g~I~vwdv~~~~v~~~~~~~~~~~l~~~~~~v~sla~dg~~LasGs~Dg--------tI~lWDl~tg~~ 787 (1341)
+.+..||...++.... ...|.. ..+ ..++..++...+.|+.++ .+.+||..+++-
T Consensus 406 ~~v~~yd~~t~~W~~~-~~~p~~-r~~----~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 406 KTVECFSLNTNKWSKG-SPLPIS-HYG----GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred ceEEEEeCCCCeeeec-CCCCcc-ccC----ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCce
Confidence 3567788765544321 112211 001 223445777777776532 388999988763
No 422
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=66.62 E-value=1.3e+02 Score=34.49 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=75.2
Q ss_pred CCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe
Q 000707 43 GSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS 122 (1341)
Q Consensus 43 ~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~ 122 (1341)
.+...++|+.+.+.+.+++-.. .=..++ . +|..|...+.+.++..+|..+-+
T Consensus 109 ~~~~f~yd~~tl~~~~~~~y~~------------EGWGLt--~--------------dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFPYPG------------EGWGLT--S--------------DGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE-SS------------S--EEE--E--------------CSSCEEEE-SSSEEEEE-TTT-S
T ss_pred CCeEEEEccccceEEEEEecCC------------cceEEE--c--------------CCCEEEEECCccceEEECCcccc
Confidence 3556788888888877765443 223443 2 35667777778899999998887
Q ss_pred EEEEecCCCCCC--CCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCC---------------CCceEEE
Q 000707 123 VVLWIDPDPNPK--LGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDAS---------------PEYLSCI 185 (1341)
Q Consensus 123 ~~~~l~~~~h~~--~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~---------------~~~v~~~ 185 (1341)
.+..+....... ..++.|.|. ++ .+.|=.-....|..=|..||+.+..++.+ .+.++.+
T Consensus 161 ~~~~i~V~~~g~pv~~LNELE~i-~G---~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 161 EVRTIQVTDNGRPVSNLNELEYI-NG---KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp EEEEEE-EETTEE---EEEEEEE-TT---EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred eEEEEEEEECCEECCCcEeEEEE-cC---EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeE
Confidence 777665432222 145778887 33 77777777778888899999887655321 2467899
Q ss_pred EEcCCCCCEEEE
Q 000707 186 RRNPFDARHFCV 197 (1341)
Q Consensus 186 ~fsP~d~~~la~ 197 (1341)
|++|-..+.+++
T Consensus 237 Ayd~~~~~l~vT 248 (264)
T PF05096_consen 237 AYDPETDRLFVT 248 (264)
T ss_dssp EEETTTTEEEEE
T ss_pred eEeCCCCEEEEE
Confidence 999944333333
No 423
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=65.91 E-value=3.1e+02 Score=33.25 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=71.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCceeeeEEe
Q 000707 529 VPLVALGTQSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINRAFRVL 608 (1341)
Q Consensus 529 ~~llAsGs~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~~l~~l 608 (1341)
.+..+....++.|.+.|..+..+......-. .-..++|++++..+=.+.. +...+++.+.|..+++ .+...
T Consensus 86 ~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~------~~~~~~vsvid~~t~~--~~~~~ 156 (381)
T COG3391 86 NKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANA------GNGNNTVSVIDAATNK--VTATI 156 (381)
T ss_pred CeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEec------ccCCceEEEEeCCCCe--EEEEE
Confidence 3466666678999999988777766554333 4467899988743322221 1134688888888776 44433
Q ss_pred ccCCCCCeEEEEECCCCCEEEEE-ECCCcEEEEeccCCCcee
Q 000707 609 QKPERAPIRALRASSSGRYLLIL-FRDAPVEVWAMTKNPIML 649 (1341)
Q Consensus 609 ~~~~~~~I~~i~~SpdG~~Las~-s~D~~I~vWDl~~t~~~l 649 (1341)
.. ...| ..++++|+|.++.+. +.++.|-+.|. ......
T Consensus 157 ~v-G~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~-~~~~v~ 195 (381)
T COG3391 157 PV-GNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT-SGNSVV 195 (381)
T ss_pred ec-CCCc-ceEEECCCCCeEEEEecCCCeEEEEeC-CCccee
Confidence 32 2234 889999999977655 47889999997 454333
No 424
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=65.87 E-value=26 Score=40.49 Aligned_cols=116 Identities=16% Similarity=0.079 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHc-cCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHH----hh--c-CCccHHHHHHHHHHHhhc
Q 000707 1164 ELAVKVVAANMVRN-DRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAA----TH--L-KGSDYARVLQRWADHVHH 1235 (1341)
Q Consensus 1164 ~~~~k~~a~~l~~~-~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~----~~--l-~~~~~~~~~~r~a~~l~~ 1235 (1341)
-.+.+.+|..+... |+.++|+.+| ++|+++++..+.-..+..... .. + .-++..+++++-+...++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y------~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYY------QKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHH------HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 34445566655555 5666666554 344555555554433332221 11 1 112333444444443222
Q ss_pred cc-----c-c-HHHHHHHHHHhCCHHHHHHHHHhcC--C--------chHHHHHHHHHHHHhhhhhc
Q 000707 1236 VE-----H-N-IWRALILYVAAGGLQEALAALREAQ--H--------PDTAAMFVLACREIYAEIIT 1285 (1341)
Q Consensus 1236 ~~-----~-~-~~~A~~~~~~~g~~~~a~~~l~~~~--~--------~~~aa~~~~~~~e~~~~~~~ 1285 (1341)
.. . . ..+|++|+++.|+...|-+.|-+-. . +.++.-++++|.+...+.++
T Consensus 188 ~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~ 254 (282)
T PF14938_consen 188 NNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT 254 (282)
T ss_dssp HCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred ccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence 11 1 1 2589999999999999999988622 1 23344566676665554444
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.62 E-value=92 Score=40.96 Aligned_cols=70 Identities=21% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCCcEEE-----Ee----CCCCeE--E-EEecC-----CCCCCCCeeEEEEeecCCCccEEEEEeCCCeE
Q 000707 99 SSHLLLAAADRHGRVAL-----LD----FRLRSV--V-LWIDP-----DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVL 161 (1341)
Q Consensus 99 p~g~~LASg~~dG~I~v-----WD----v~tg~~--~-~~l~~-----~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i 161 (1341)
|+|.+||-.|..|.+.+ |- +..|.. . +.+.+ ..+....|..+.|.|.+..+..|++..+|++|
T Consensus 94 ~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 94 PTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred CCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 45788888888775543 31 112221 1 12111 12223378999999997544678889999999
Q ss_pred EEEECCC
Q 000707 162 SLYNTTS 168 (1341)
Q Consensus 162 ~lWd~~t 168 (1341)
++||+..
T Consensus 174 R~y~~~~ 180 (717)
T PF10168_consen 174 RLYDISD 180 (717)
T ss_pred EEEecCC
Confidence 9999963
No 426
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=65.39 E-value=39 Score=44.48 Aligned_cols=138 Identities=20% Similarity=0.189 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCHHHHHHHhhc-----CCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHc-cCC------cc
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLS-----TSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRN-DRS------LS 1182 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~-----~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~-~~~------~~ 1182 (1341)
..++.-+...|+.++|++++-+ ..|+... |.--+.||. -.+..+.+.++.-. |... |.. .-
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~-----~~g~~~~a~~~f~~-m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-FLAVLSACR-----YSGLSEQGWEIFQS-MSENHRIKPRAMHYAC 467 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHh-----cCCcHHHHHHHHHH-HHHhcCCCCCccchHh
Confidence 3467778888888888885543 3344222 222333333 33444554444333 3332 221 12
Q ss_pred hhhHHHhcCcHHHHHHHhhccCc------HHHHHHHHHhhcCCccHHHHHHHHHHHhhcccc----cHHHHHHHHHHhCC
Q 000707 1183 GTHLLCAVGRYQEACSQLQDAGC------WTDAATLAATHLKGSDYARVLQRWADHVHHVEH----NIWRALILYVAAGG 1252 (1341)
Q Consensus 1183 ~v~~~~~~g~~~~a~~~l~~~~~------w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~----~~~~A~~~~~~~g~ 1252 (1341)
-|.+|+..|+.+||.++++..+. |.--+.....+=+ .+.-++.+++++.-+. ..-.-+.+|.+.|.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~----~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKN----LELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----cHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence 35778888888888888876543 3333333322211 1222333444432211 12234557888888
Q ss_pred HHHHHHHHHhc
Q 000707 1253 LQEALAALREA 1263 (1341)
Q Consensus 1253 ~~~a~~~l~~~ 1263 (1341)
+.+|.+++.+|
T Consensus 544 ~~~A~~v~~~m 554 (697)
T PLN03081 544 QAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHHH
Confidence 88888888763
No 427
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.18 E-value=77 Score=35.57 Aligned_cols=140 Identities=20% Similarity=0.214 Sum_probs=91.7
Q ss_pred ChHHHHH----HHHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH-ccCCcch
Q 000707 1109 EGEQAIQ----NRVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR-NDRSLSG 1183 (1341)
Q Consensus 1109 ~~~e~~~----~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~-~~~~~~~ 1183 (1341)
..-|+++ ..+-.+++.|+.+ .+.+||+|+ -.--|+=-+--++|+. |.+|++.+. .=.++.|
T Consensus 136 r~fEyLRLtsLGVIgaLvk~dd~e-Vi~fLl~Te---------IVPlCLrime~GSelS----KtvA~fIlqKIlldD~G 201 (293)
T KOG3036|consen 136 RPFEYLRLTSLGVIGALVKNDDQE-VIRFLLTTE---------IVPLCLRIMESGSELS----KTVATFILQKILLDDVG 201 (293)
T ss_pred CchHHHhHHHHHHHHHHHhcCcHH-HHHHHHHhh---------hHHHHHHHHhcccHHH----HHHHHHHHHHHhhcccc
Confidence 4456643 2377788888877 888999999 3333444444556655 557775555 2233789
Q ss_pred hhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhccccc-H-HHHHHHHHHhCCHHHHHHHHH
Q 000707 1184 THLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHN-I-WRALILYVAAGGLQEALAALR 1261 (1341)
Q Consensus 1184 v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~-~-~~A~~~~~~~g~~~~a~~~l~ 1261 (1341)
..|.|.. +.|+ ..+..+|.+-+.||.+...- . ..+|.||+.+-+=-.|-++|+
T Consensus 202 L~YiCqt------------~eRF-------------~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~ 256 (293)
T KOG3036|consen 202 LYYICQT------------AERF-------------SAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALR 256 (293)
T ss_pred HHHHHHh------------HHHH-------------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9998876 2222 12456777778888554422 2 789999999999999999998
Q ss_pred h---cCCch-HHHHHHH---HHHHHhhhhhccc
Q 000707 1262 E---AQHPD-TAAMFVL---ACREIYAEIITNL 1287 (1341)
Q Consensus 1262 ~---~~~~~-~aa~~~~---~~~e~~~~~~~~~ 1287 (1341)
+ -+++| .++.++. .|+.+.++-+.++
T Consensus 257 ~clPd~Lrd~tfs~~l~~D~~~k~~l~~ll~~l 289 (293)
T KOG3036|consen 257 SCLPDQLRDGTFSLLLKDDPETKQWLQQLLKNL 289 (293)
T ss_pred hhCcchhccchHHHHHhcChhHHHHHHHHHHHh
Confidence 7 34444 4455554 3777777776654
No 428
>PRK10115 protease 2; Provisional
Probab=62.45 E-value=4.8e+02 Score=34.34 Aligned_cols=109 Identities=9% Similarity=0.130 Sum_probs=60.3
Q ss_pred CCCEEEEEe-----CCCcEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCce
Q 000707 528 AVPLVALGT-----QSGAVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN 602 (1341)
Q Consensus 528 ~~~llAsGs-----~DGtI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~ 602 (1341)
++++||.+. +.-+|++-|+.+|..+... ....-..++|++|++-+.++.... .......+..+++.|+..
T Consensus 137 dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i~~~~~~~~w~~D~~~~~y~~~~~---~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 137 DNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--LDNVEPSFVWANDSWTFYYVRKHP---VTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred CCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--ccCcceEEEEeeCCCEEEEEEecC---CCCCCCEEEEEECCCChh
Confidence 578877543 3346899999988633211 111114699998875444433211 011335788899988832
Q ss_pred eeeEEeccCCCCCeE-EEEECCCCCEEEEEEC---CCcEEEEec
Q 000707 603 RAFRVLQKPERAPIR-ALRASSSGRYLLILFR---DAPVEVWAM 642 (1341)
Q Consensus 603 ~~l~~l~~~~~~~I~-~i~~SpdG~~Las~s~---D~~I~vWDl 642 (1341)
.....+.+.. .... .+..+.|++++++.+. ++.+.+++.
T Consensus 212 ~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 212 QDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred HCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 1212222222 2233 4455668998876543 346777774
No 429
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=62.31 E-value=80 Score=39.54 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=77.3
Q ss_pred eEeCCCCeEEEEcCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeC
Q 000707 30 ADLSPSGLLAFASGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADR 109 (1341)
Q Consensus 30 ~~~s~~gllA~gs~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~ 109 (1341)
+-.-++|.|.+++++.+..+|.. |+.+.......+ . ..|++|- .+-|+|.+|+-+..
T Consensus 153 ~~~l~nG~ll~~~~~~~~e~D~~-G~v~~~~~l~~~-----------~---~~~HHD~--------~~l~nGn~L~l~~~ 209 (477)
T PF05935_consen 153 FKQLPNGNLLIGSGNRLYEIDLL-GKVIWEYDLPGG-----------Y---YDFHHDI--------DELPNGNLLILASE 209 (477)
T ss_dssp EEE-TTS-EEEEEBTEEEEE-TT---EEEEEE--TT-----------E---E-B-S-E--------EE-TTS-EEEEEEE
T ss_pred eeEcCCCCEEEecCCceEEEcCC-CCEEEeeecCCc-----------c---ccccccc--------EECCCCCEEEEEee
Confidence 55667886666666888888875 666544433332 0 1222211 11256777766651
Q ss_pred -------------CCcEEEEeCCCCeEEEEecCCCCC----C--------------------CCeeEEEEeecCCCccEE
Q 000707 110 -------------HGRVALLDFRLRSVVLWIDPDPNP----K--------------------LGIQDLCWIVSKPDSFVL 152 (1341)
Q Consensus 110 -------------dG~I~vWDv~tg~~~~~l~~~~h~----~--------------------~~V~~l~wsp~~~~~~lL 152 (1341)
.-.|...| .+|+.+..+....|- . ..++++.+.+.. ..+|
T Consensus 210 ~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~d--d~ii 286 (477)
T PF05935_consen 210 TKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSD--DSII 286 (477)
T ss_dssp TTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTT--TEEE
T ss_pred cccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCC--CeEE
Confidence 12466777 778777665432221 0 147888888743 2788
Q ss_pred EEEeCCCeEEEEECCCCeEEEEEeCCCC---c----e-EE------------EEEcCCCCCEEEEEeCCC---eEEEEEe
Q 000707 153 AAINGPSVLSLYNTTSASCMWKYDASPE---Y----L-SC------------IRRNPFDARHFCVLGLKG---LLLSVRV 209 (1341)
Q Consensus 153 as~s~d~~i~lWd~~tg~~i~~~~~~~~---~----v-~~------------~~fsP~d~~~la~~~~dG---~i~~~d~ 209 (1341)
+|+-.-+.|...|-.+|+..|.+..+.+ . + +- -.|+.+-+.+-+..-.+| .|.++|-
T Consensus 287 vSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDN 366 (477)
T PF05935_consen 287 VSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDN 366 (477)
T ss_dssp EEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE-
T ss_pred EEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEEC
Confidence 8887777899999889999998865321 1 1 11 123344566777777777 7777764
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=62.02 E-value=3.3e+02 Score=32.31 Aligned_cols=148 Identities=19% Similarity=0.140 Sum_probs=80.1
Q ss_pred CCCceEeCCCC-eEEEEcCCeEEE-EeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcE
Q 000707 26 NFGSADLSPSG-LLAFASGSSISI-LDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLL 103 (1341)
Q Consensus 26 ~~~a~~~s~~g-llA~gs~~~V~v-~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~ 103 (1341)
.+..+...|+| ++++|..+.+.. +|. .++.-..+..+.. ..++++.+.|++ ..
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~----------~~l~~i~~~~~g--------------~~ 228 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSS----------RRLQSMGFQPDG--------------NL 228 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCc----------ccceeeeEcCCC--------------CE
Confidence 35678888888 777887776543 222 2232333333332 278899998763 45
Q ss_pred EEEEeCCCcEEEEeCCCCeEEEEecCC-C-CCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeC----
Q 000707 104 LAAADRHGRVALLDFRLRSVVLWIDPD-P-NPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDA---- 177 (1341)
Q Consensus 104 LASg~~dG~I~vWDv~tg~~~~~l~~~-~-h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~---- 177 (1341)
++.| ..|.+++=....|..-.....+ . ... .+.++.|.+++ .+++++ .++.+. ...+.|+ -|....
T Consensus 229 ~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~-~l~~v~~~~~~---~~~~~G-~~G~v~-~S~d~G~-tW~~~~~~~~ 300 (334)
T PRK13684 229 WMLA-RGGQIRFNDPDDLESWSKPIIPEITNGY-GYLDLAYRTPG---EIWAGG-GNGTLL-VSKDGGK-TWEKDPVGEE 300 (334)
T ss_pred EEEe-cCCEEEEccCCCCCccccccCCcccccc-ceeeEEEcCCC---CEEEEc-CCCeEE-EeCCCCC-CCeECCcCCC
Confidence 5554 4676654334455433322111 1 112 58888998854 555544 456543 4444443 343321
Q ss_pred CCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 178 SPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 178 ~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
-+..+..+.|.. +.+..+.|..|.|+.++
T Consensus 301 ~~~~~~~~~~~~--~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 301 VPSNFYKIVFLD--PEKGFVLGQRGVLLRYV 329 (334)
T ss_pred CCcceEEEEEeC--CCceEEECCCceEEEec
Confidence 123456666653 34555566779888764
No 431
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=60.13 E-value=3.7 Score=52.52 Aligned_cols=140 Identities=16% Similarity=0.296 Sum_probs=74.1
Q ss_pred eEEEEeCC--CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCe
Q 000707 45 SISILDSR--SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRS 122 (1341)
Q Consensus 45 ~V~v~d~~--~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~ 122 (1341)
...|||+. .|++...|.-|..... +..+--|.|.|-- ++..++--+..+|.|+|-...+..
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~------gs~~~~V~wcp~~-----------~~~~~ic~~~~~~~i~lL~~~ra~ 216 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPY------GSDPQLVSWCPIA-----------VNKVYICYGLKGGEIRLLNINRAL 216 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcC------CCCcceeeecccc-----------cccceeeeccCCCceeEeeechHH
Confidence 34577653 4555444444432111 1256778888742 455677788889999876654432
Q ss_pred EEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeE-EEE-EeCCCCceEE-EEEcCCC-CCEEEEE
Q 000707 123 VVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASC-MWK-YDASPEYLSC-IRRNPFD-ARHFCVL 198 (1341)
Q Consensus 123 ~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~-i~~-~~~~~~~v~~-~~fsP~d-~~~la~~ 198 (1341)
. .+ +.+|+. .+.+++|...+- ..|++.+.||++..|-...|-. .|. +..+.....| .-|-|+| .-++|..
T Consensus 217 ~--~l-~rsHs~-~~~d~a~~~~g~--~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l 290 (1283)
T KOG1916|consen 217 R--SL-FRSHSQ-RVTDMAFFAEGV--LKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL 290 (1283)
T ss_pred H--HH-HHhcCC-CcccHHHHhhch--hhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee
Confidence 2 22 345766 777777754331 3445555555555555544431 111 1111111122 2356666 4566666
Q ss_pred eCCCeEEEE
Q 000707 199 GLKGLLLSV 207 (1341)
Q Consensus 199 ~~dG~i~~~ 207 (1341)
+++..+...
T Consensus 291 c~~~~~~~v 299 (1283)
T KOG1916|consen 291 CHKQEILVV 299 (1283)
T ss_pred eccccccCC
Confidence 666665553
No 432
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=59.91 E-value=3.5e+02 Score=34.09 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhc---cChHHHHHHHHHHHHHcCCHHHHHHHhhcC--------CCCCchhHHHHHHHhhhhccc----
Q 000707 1094 LWETAAERITWHEK---LEGEQAIQNRVHELVSVGNLEAAVSLLLST--------SPESSYFYANALRAVALSSAV---- 1158 (1341)
Q Consensus 1094 ~~~~~~er~~~~e~---~~~~e~~~~~~~~~~~lG~~~~av~lLl~~--------~pe~~~~~~~al~a~~~a~~~---- 1158 (1341)
+.+.++++..-+.. +....+++.++.-+..+++.++||.++-+. +++|++ +...+.-++++-..
T Consensus 221 l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~-va~~l~nLa~ly~~~GKf 299 (508)
T KOG1840|consen 221 LCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA-VAATLNNLAVLYYKQGKF 299 (508)
T ss_pred HHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhccCCh
Confidence 34456666433332 356677677999999999998888755332 223322 12222211222221
Q ss_pred --cHHHHHHHHHHHHHHHHHccC-----CcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCcc--HHHHHHHH
Q 000707 1159 --SRSLLELAVKVVAANMVRNDR-----SLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSD--YARVLQRW 1229 (1341)
Q Consensus 1159 --s~~~~~~~~k~~a~~l~~~~~-----~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~--~~~~~~r~ 1229 (1341)
+.++.+.+++.+-..+..... +-+-...++.-+++.+|++|+| .|+.+.+..+..++ .+..-.+.
T Consensus 300 ~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q------~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 300 AEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ------KALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH------HHHHHHHhhccccchHHHHHHHHH
Confidence 244556666666553333111 2233456788888888888888 67777775554443 23455566
Q ss_pred HHHhhcccccHHHHHHHH
Q 000707 1230 ADHVHHVEHNIWRALILY 1247 (1341)
Q Consensus 1230 a~~l~~~~~~~~~A~~~~ 1247 (1341)
|.-++..++ ..+|..+|
T Consensus 374 ~~l~~~~gk-~~ea~~~~ 390 (508)
T KOG1840|consen 374 AELYLKMGK-YKEAEELY 390 (508)
T ss_pred HHHHHHhcc-hhHHHHHH
Confidence 655555443 23555554
No 433
>PLN03218 maturation of RBCL 1; Provisional
Probab=59.64 E-value=87 Score=43.16 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCCCCCchhHHH-HHHHhhhhccccHHHHHHHHHHHHHHHHHccC------CcchhhHH
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLSTSPESSYFYAN-ALRAVALSSAVSRSLLELAVKVVAANMVRNDR------SLSGTHLL 1187 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~-al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~------~~~~v~~~ 1187 (1341)
..++..+.+.|+.++|.+++-+..-+.....+| .....++......+-++.+.++.-. |...|. +-.-+..|
T Consensus 546 nsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~-M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM-IHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHcCCCCChHHHHHHHHHH
Confidence 456777777777777777654432110001111 1111233333333334455444433 333332 11234567
Q ss_pred HhcCcHHHHHHHhh
Q 000707 1188 CAVGRYQEACSQLQ 1201 (1341)
Q Consensus 1188 ~~~g~~~~a~~~l~ 1201 (1341)
|+.|++++|++.+.
T Consensus 625 ~k~G~~deAl~lf~ 638 (1060)
T PLN03218 625 SQKGDWDFALSIYD 638 (1060)
T ss_pred HhcCCHHHHHHHHH
Confidence 77787777777653
No 434
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=59.47 E-value=54 Score=41.00 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=65.4
Q ss_pred CCceEeCCC------CeEEEEcCCeEEEEeCC-----Ccce--eEeecCCCCCCCCCCCCCCCcE--EEEEEccCCCccc
Q 000707 27 FGSADLSPS------GLLAFASGSSISILDSR-----SLQL--ISTIPIPPPTSAGSVASLSPFV--TAVKWIPITLRCD 91 (1341)
Q Consensus 27 ~~a~~~s~~------gllA~gs~~~V~v~d~~-----~~~~--~~~l~~H~~~~~~~~~~~~~~V--t~v~~sp~~~~~~ 91 (1341)
|..+.|+|- .|||.-...+|.||-.. +.+. .|+.+.-.+ -+| -.+-|+|..
T Consensus 59 V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~----------~pvLpQGCVWHPk~---- 124 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREP----------FPVLPQGCVWHPKK---- 124 (671)
T ss_pred eeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCC----------cccCCCcccccCCC----
Confidence 457899884 27888788899999864 1222 222222111 011 135688764
Q ss_pred cCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECC
Q 000707 92 LLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTT 167 (1341)
Q Consensus 92 ~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~ 167 (1341)
..|+.=.....-.+.+++.........+.+ ++ -|.+.||.+||. +++++.++.=.-.+||-.
T Consensus 125 ----------~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G-~IhCACWT~DG~--RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 125 ----------AILTVLTARDVSVLPSVHCDSSRVKADIKT-SG-LIHCACWTKDGQ--RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ----------ceEEEEecCceeEeeeeeeCCceEEEeccC-Cc-eEEEEEecCcCC--EEEEEeCCeEEEEEecCc
Confidence 455554444444577775543333333433 34 799999999873 666666554455688853
No 435
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=59.41 E-value=80 Score=38.43 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=40.4
Q ss_pred HHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHh
Q 000707 1196 ACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1196 a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
-+++|...++.+.|+.+||... +-...-.+-|. .-..+|+.+|+|.+|+..|-+
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av--~lsP~~f~~W~-----------~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAV--ELSPSEFETWY-----------QLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH--HhCchhHHHHH-----------HHHHHHHhcCCHHHHHHHHhc
Confidence 3688999999999999999884 11122333443 345689999999999999987
No 436
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=58.64 E-value=76 Score=42.46 Aligned_cols=145 Identities=10% Similarity=0.060 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHH---hhcCCCCCchhHH-HHHHHhhhhccccHHHHHHHHHH-HHHHHHHccCCcch
Q 000707 1109 EGEQAIQNRVHELVSVGNLEAAVSL---LLSTSPESSYFYA-NALRAVALSSAVSRSLLELAVKV-VAANMVRNDRSLSG 1183 (1341)
Q Consensus 1109 ~~~e~~~~~~~~~~~lG~~~~av~l---Ll~~~pe~~~~~~-~al~a~~~a~~~s~~~~~~~~k~-~a~~l~~~~~~~~~ 1183 (1341)
...+...+++..+...|+.++|+++ .++.+|++..||. .+. +.. +.+.+....-+ +.. .+....-++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~----q~~~~~~~~lv~~l~-~~~~~~~~~~ 101 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSL----SRRPLNDSNLLNLID-SFSQNLKWAI 101 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHH----hhcchhhhhhhhhhh-hcccccchhH
Confidence 3456668899999999999999997 7899999886553 333 111 11223222222 112 2223334788
Q ss_pred hhHHHh-cCcHH---HHH----HHhhccCcHHHHHHHHHhh--cCCccHHHHHHHHHHHhhcccccHHHHHHHHHHhCCH
Q 000707 1184 THLLCA-VGRYQ---EAC----SQLQDAGCWTDAATLAATH--LKGSDYARVLQRWADHVHHVEHNIWRALILYVAAGGL 1253 (1341)
Q Consensus 1184 v~~~~~-~g~~~---~a~----~~l~~~~~w~~a~~la~~~--l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~g~~ 1253 (1341)
|.++|. +|++. .|. .++...|++++|...-..- +. .+=..+|.++|-.+... ++.+|+.+|.
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~--dL~KA~~m~~----- 173 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE--DKEKAITYLK----- 173 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh--hHHHHHHHHH-----
Confidence 888873 33332 232 4566779999998887766 33 23457999999999766 5667777663
Q ss_pred HHHHHHHHhcCCchHH
Q 000707 1254 QEALAALREAQHPDTA 1269 (1341)
Q Consensus 1254 ~~a~~~l~~~~~~~~a 1269 (1341)
+|++.+...++|.-+
T Consensus 174 -KAV~~~i~~kq~~~~ 188 (906)
T PRK14720 174 -KAIYRFIKKKQYVGI 188 (906)
T ss_pred -HHHHHHHhhhcchHH
Confidence 456666655555443
No 437
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=58.58 E-value=1.8e+02 Score=34.81 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH---hhcCCCCC
Q 000707 1112 QAIQNRVHELVSVGNLEAAVSL---LLSTSPES 1141 (1341)
Q Consensus 1112 e~~~~~~~~~~~lG~~~~av~l---Ll~~~pe~ 1141 (1341)
+....++..+...|+.++|+++ ++...|++
T Consensus 142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 174 (389)
T PRK11788 142 GALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS 174 (389)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc
Confidence 3445667777777888877773 34445543
No 438
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=57.99 E-value=41 Score=42.86 Aligned_cols=73 Identities=10% Similarity=0.162 Sum_probs=44.2
Q ss_pred cCCCceEEEEcCCeEEEEEcCC----CceeEEEecCCC--------------------ccceEEEEEcC----CCCEEEE
Q 000707 263 PHWRHIIFVTFPRELVVFDLQY----ETPLFSAALPRG--------------------CAKFLDVLADP----NNDLLYC 314 (1341)
Q Consensus 263 pdg~~l~~~~~d~~I~iwDl~t----~~~l~~~~l~~~--------------------~~~~~~v~~~p----dg~~L~s 314 (1341)
++...++.+..||.+....... +........... ......+...+ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666888888999999988875 222211111100 11223333444 6779999
Q ss_pred EecCCcEEEEeccCCceeeee
Q 000707 315 AHLDGKLSIWRRKEGEQVHVM 335 (1341)
Q Consensus 315 ~~~DgtI~lW~~~~g~~~~~~ 335 (1341)
.+.|+++|+|+.+++.++.++
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999876654
No 439
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=57.91 E-value=74 Score=40.14 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=38.0
Q ss_pred cChHHHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHHHHHHHh
Q 000707 1108 LEGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAV 1152 (1341)
Q Consensus 1108 ~~~~e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~~al~a~ 1152 (1341)
++....+...|+-++.+|+.++|-+ -||+.||||-.||..=..+.
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3555566678999999999998887 89999999999998877776
No 440
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=57.79 E-value=4.4e+02 Score=32.41 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCe-----EEEEecCCCCCCCCeeEEEEeec--CCCccEEEEEeCCCeEEEEECC--CCe
Q 000707 100 SHLLLAAADRHGRVALLDFRLRS-----VVLWIDPDPNPKLGIQDLCWIVS--KPDSFVLAAINGPSVLSLYNTT--SAS 170 (1341)
Q Consensus 100 ~g~~LASg~~dG~I~vWDv~tg~-----~~~~l~~~~h~~~~V~~l~wsp~--~~~~~lLas~s~d~~i~lWd~~--tg~ 170 (1341)
+...++.|+.+|.++|.+...+. .+.+..+ +.||..|..-.- +.+...||+.+ +..+.+|.+. .|.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l----~~PILqv~~G~F~s~~~~~~LaVLh-P~kl~vY~v~~~~g~ 110 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL----KDPILQVECGKFVSGSEDLQLAVLH-PRKLSVYSVSLVDGT 110 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEec----CCcEEEEEeccccCCCCcceEEEec-CCEEEEEEEEecCCC
Confidence 35689999999999999985543 2333222 239999986542 11226888887 7788898873 222
Q ss_pred ----------EEEEEeCCCCceEEEEEcCCCC----CEEEEEeCCCeEEEEE
Q 000707 171 ----------CMWKYDASPEYLSCIRRNPFDA----RHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 171 ----------~i~~~~~~~~~v~~~~fsP~d~----~~la~~~~dG~i~~~d 208 (1341)
.+..... +.....+..-||.+ ..+|+=+.||.+.+++
T Consensus 111 ~~~g~~~~L~~~yeh~l-~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe 161 (418)
T PF14727_consen 111 VEHGNQYQLELIYEHSL-QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE 161 (418)
T ss_pred cccCcEEEEEEEEEEec-ccceeEEEEEECCCCCCceEEEEEecCceEEEEe
Confidence 1122222 22334556667754 6788889999999986
No 441
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=57.19 E-value=2.2e+02 Score=28.72 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=10.4
Q ss_pred HHHHHHhhccCcHHHHHHHH
Q 000707 1194 QEACSQLQDAGCWTDAATLA 1213 (1341)
Q Consensus 1194 ~~a~~~l~~~~~w~~a~~la 1213 (1341)
..|.++|..++.|++|+.+.
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHH
Confidence 44555555555555555444
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.04 E-value=1.4e+02 Score=36.93 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCCCcEEEEEeCCCcEEE-----Ee----CCCCeE---EEEecC-----CCCCCCCeeEEEEeecCCCccEEEEEeCCCe
Q 000707 98 GSSHLLLAAADRHGRVAL-----LD----FRLRSV---VLWIDP-----DPNPKLGIQDLCWIVSKPDSFVLAAINGPSV 160 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~v-----WD----v~tg~~---~~~l~~-----~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~ 160 (1341)
++.|..+|-++.+|.+.. |- +.+|+. -+++.+ ...+.-.+...+|.|+.--...|....+|++
T Consensus 112 s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sdnv 191 (741)
T KOG4460|consen 112 SPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSDNV 191 (741)
T ss_pred cCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEEEEecCcE
Confidence 466788888888886653 43 234521 122211 1122225778899998621145666888999
Q ss_pred EEEEECCCCeEEEEEeC
Q 000707 161 LSLYNTTSASCMWKYDA 177 (1341)
Q Consensus 161 i~lWd~~tg~~i~~~~~ 177 (1341)
|++||...-+-+|-..+
T Consensus 192 iRiy~lS~~telylqpg 208 (741)
T KOG4460|consen 192 IRIYSLSEPTELYLQPG 208 (741)
T ss_pred EEEEecCCcchhhccCC
Confidence 99999988777776554
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.04 E-value=98 Score=35.87 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=53.7
Q ss_pred cEEEEeCCCCeEEEEecCCCCCCCCeeEEEEeecCCCccEEEEEe------CCCeEEEEECCCCeEEEE-EeCC-----C
Q 000707 112 RVALLDFRLRSVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAIN------GPSVLSLYNTTSASCMWK-YDAS-----P 179 (1341)
Q Consensus 112 ~I~vWDv~tg~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~s------~d~~i~lWd~~tg~~i~~-~~~~-----~ 179 (1341)
-|++||..+.+...- ..+-.+ .|.+|.|..+. +++++|. ....+..||..+.+ |. +... +
T Consensus 17 ~lC~yd~~~~qW~~~--g~~i~G-~V~~l~~~~~~---~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSP--GNGISG-TVTDLQWASNN---QLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred EEEEEECCCCEeecC--CCCceE-EEEEEEEecCC---EEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 489999987766543 223345 89999998543 7888774 45678899987653 53 3331 3
Q ss_pred CceEEEEEcCCCCCEEEEEe
Q 000707 180 EYLSCIRRNPFDARHFCVLG 199 (1341)
Q Consensus 180 ~~v~~~~fsP~d~~~la~~~ 199 (1341)
+++..+.+.-.|...+.++|
T Consensus 89 gpv~a~~~~~~d~~~~~~aG 108 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAG 108 (281)
T ss_pred CcEEEEEeeccCCceEEEec
Confidence 67888888666777666443
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=56.81 E-value=3.5e+02 Score=33.92 Aligned_cols=185 Identities=9% Similarity=-0.063 Sum_probs=0.0
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcEEEEEeecCCCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCce
Q 000707 528 AVPLVALGTQSG-----AVDVVDVSANAVTASFSVHNGTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGIN 602 (1341)
Q Consensus 528 ~~~llAsGs~DG-----tI~lWDl~tg~~~~~l~~H~~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~ 602 (1341)
++.++++|+.++ ++..||..++.-...-.-.......-...-++.+...+..... +.+..||..+++.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~-------~sve~ydp~~n~W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP-------TSVERWFHGDAAW 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC-------CceEEEECCCCeE
Q ss_pred eeeEEeccCCCCCeEEEEECCCCCEEEEEECCCc---EEEEeccCCCceeeeccCce-----EEEEEcCCCCCCCCCCCC
Q 000707 603 RAFRVLQKPERAPIRALRASSSGRYLLILFRDAP---VEVWAMTKNPIMLRSLALPF-----TVLEWTLPTVPWPSQTGP 674 (1341)
Q Consensus 603 ~~l~~l~~~~~~~I~~i~~SpdG~~Las~s~D~~---I~vWDl~~t~~~l~~l~~~v-----~~l~wsp~~~~~~~~~~~ 674 (1341)
..+..+.. ..-......-+|+..++|+.++. ++.||. ++.+-...-..+. ..+...
T Consensus 344 ~~~~~l~~---~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp-~~~~W~~~~~m~~~r~~~~~~~~~------------ 407 (480)
T PHA02790 344 VNMPSLLK---PRCNPAVASINNVIYVIGGHSETDTTTEYLLP-NHDQWQFGPSTYYPHYKSCALVFG------------ 407 (480)
T ss_pred EECCCCCC---CCcccEEEEECCEEEEecCcCCCCccEEEEeC-CCCEEEeCCCCCCccccceEEEEC------------
Q ss_pred CcccccccCCCCCccCCCcccccccCCCCCcCCCCCCccCCCCCeEEEEecCCcEEEEEecCCeeecccCCCCCCccccc
Q 000707 675 SRQSSLSSKDHKADTTDGVSTPTIASSSDSKDASSEGSQDDTSESFAFALANGALGVFEVHGRRIRDFRPKWPSSSFISS 754 (1341)
Q Consensus 675 ~k~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~s~~~~~e~la~~~~Dg~I~vwdv~~~~v~~~~~~~~~~~l~~~ 754 (1341)
+..++.| |.+.+||.+.++-....+.....
T Consensus 408 ------------------------------------------~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r----- 437 (480)
T PHA02790 408 ------------------------------------------RRLFLVG---RNAEFYCESSNTWTLIDDPIYPR----- 437 (480)
T ss_pred ------------------------------------------CEEEEEC---CceEEecCCCCcEeEcCCCCCCc-----
Q ss_pred cceEEEEeecCCEEEEEeCC-----CcEEEEECCCCc
Q 000707 755 DGLITAMAYRLPHVVMGDRS-----GNIRWWDVTTGH 786 (1341)
Q Consensus 755 ~~~v~sla~dg~~LasGs~D-----gtI~lWDl~tg~ 786 (1341)
........+|++.+.|+.+ .+|.+||..+++
T Consensus 438 -~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 438 -DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred -cccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
No 445
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=56.35 E-value=2.2e+02 Score=37.19 Aligned_cols=32 Identities=6% Similarity=-0.058 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchh
Q 000707 1113 AIQNRVHELVSVGNLEAAVS---LLLSTSPESSYF 1144 (1341)
Q Consensus 1113 ~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~ 1144 (1341)
....++..+...|+.++|++ -.++.+|++...
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 33445555555566666655 334445554433
No 446
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=56.04 E-value=4e+02 Score=31.31 Aligned_cols=106 Identities=11% Similarity=0.038 Sum_probs=54.3
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCC-eEEEEecCCCCCCCCeeEEEEeecCCCccEEEEE
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLR-SVVLWIDPDPNPKLGIQDLCWIVSKPDSFVLAAI 155 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg-~~~~~l~~~~h~~~~V~~l~wsp~~~~~~lLas~ 155 (1341)
.+..+.-++| |.++|.+.......-||--.. -..+. ...+. .|+.|.|.|++ .+.+..
T Consensus 146 s~~~~~r~~d--------------G~~vavs~~G~~~~s~~~G~~~w~~~~---r~~~~-riq~~gf~~~~---~lw~~~ 204 (302)
T PF14870_consen 146 SINDITRSSD--------------GRYVAVSSRGNFYSSWDPGQTTWQPHN---RNSSR-RIQSMGFSPDG---NLWMLA 204 (302)
T ss_dssp -EEEEEE-TT--------------S-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS--EEEEEE-TTS----EEEEE
T ss_pred eeEeEEECCC--------------CcEEEEECcccEEEEecCCCccceEEc---cCccc-eehhceecCCC---CEEEEe
Confidence 5677766654 678888876666678986432 22222 12235 89999999986 444433
Q ss_pred eCCCeEEEEECCCCeEEEEEeCC-----CCceEEEEEcCCCCCEEEEEeCCCeEEE
Q 000707 156 NGPSVLSLYNTTSASCMWKYDAS-----PEYLSCIRRNPFDARHFCVLGLKGLLLS 206 (1341)
Q Consensus 156 s~d~~i~lWd~~tg~~i~~~~~~-----~~~v~~~~fsP~d~~~la~~~~dG~i~~ 206 (1341)
..+.|+.=+......-|..... .-.+..+++.| +....++++ .|.++.
T Consensus 205 -~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 205 -RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTLLV 257 (302)
T ss_dssp -TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEEES-TT-EEE
T ss_pred -CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEEeC-CccEEE
Confidence 6677777762222223433111 12467899998 666666655 466655
No 447
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.37 E-value=4e+02 Score=31.19 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=66.5
Q ss_pred CCceEeCCCC-eEEEEc-CCeEEEEeCC-------CcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCC
Q 000707 27 FGSADLSPSG-LLAFAS-GSSISILDSR-------SLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEP 97 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs-~~~V~v~d~~-------~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~ 97 (1341)
.=-++++|.| +.+... -+...++|.. ...++-+++...+. ......|.+.|...... ..+...
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~------~~~~~PTGiVfN~~~~F--~vt~~g 96 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPL------AAEGTPTGQVFNGSDTF--VVSGEG 96 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCC------CCCCCccEEEEeCCCce--EEcCCC
Confidence 3458999988 544443 3577889875 12334556543320 11236788888754321 111000
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCeE---EEEecCCCC-CCCCe-eEEEEeecCCCccEE-EEEeCCCeEEEEECC
Q 000707 98 GSSHLLLAAADRHGRVALLDFRLRSV---VLWIDPDPN-PKLGI-QDLCWIVSKPDSFVL-AAINGPSVLSLYNTT 167 (1341)
Q Consensus 98 ~p~g~~LASg~~dG~I~vWDv~tg~~---~~~l~~~~h-~~~~V-~~l~wsp~~~~~~lL-as~s~d~~i~lWd~~ 167 (1341)
.....+.+-++.||+|.=|...-+.. ...+..... .+ .| ..|+....+.. .+| |+==..++|-++|..
T Consensus 97 ~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g-avYkGLAi~~~~~~-~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 97 ITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG-NVYKGLAVGPTGGG-DYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred cccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCc-ceeeeeEEeecCCC-ceEEEeccCCCceEEecCc
Confidence 01123466778999999998643322 111112211 22 44 55666654321 333 332345677777753
No 448
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=55.34 E-value=2.4e+02 Score=37.43 Aligned_cols=24 Identities=8% Similarity=0.109 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCC
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLSTS 1138 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~~ 1138 (1341)
..+++.+...|+.++|++++-+..
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~~~~~ 117 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDELPGKT 117 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhhcccc
Confidence 445666666777777777665543
No 449
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.33 E-value=56 Score=41.88 Aligned_cols=80 Identities=10% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHccCCcchhhHHHhcCc----HHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 000707 1174 MVRNDRSLSGTHLLCAVGR----YQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIWRALILYVA 1249 (1341)
Q Consensus 1174 l~~~~~~~~~v~~~~~~g~----~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~ 1249 (1341)
|+..++ |+....+...-+ |.==|.+|.++|.-.||...+-. +++- . +|=..||.-+. ..+|+.+...
T Consensus 725 La~~~k-weeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYipr-v~~l--~---ekv~ay~~~~~--~~eAad~A~~ 795 (829)
T KOG2280|consen 725 LADIKK-WEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPR-VGGL--Q---EKVKAYLRVGD--VKEAADLAAE 795 (829)
T ss_pred HHhhhh-HHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhc-cCCh--H---HHHHHHHHhcc--HHHHHHHHHH
Confidence 444555 777777776666 55566777777888877766543 2111 1 55666665544 4679998888
Q ss_pred hCCHHHHHHHHHh
Q 000707 1250 AGGLQEALAALRE 1262 (1341)
Q Consensus 1250 ~g~~~~a~~~l~~ 1262 (1341)
..+-....+++..
T Consensus 796 ~rd~~~L~ev~~~ 808 (829)
T KOG2280|consen 796 HRDGAELSEVLSK 808 (829)
T ss_pred hcChHHHHHHHHh
Confidence 8887777666654
No 450
>PLN03077 Protein ECB2; Provisional
Probab=55.28 E-value=93 Score=42.02 Aligned_cols=165 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchh------hHHHhc
Q 000707 1117 RVHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGT------HLLCAV 1190 (1341)
Q Consensus 1117 ~~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v------~~~~~~ 1190 (1341)
++.-+...|+.++|++++-+-. +..-......-..++.+....+-++.+.+++.. ++..|.....+ ..|+++
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~-~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~-~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALME-QDNVSPDEITIASVLSACACLGDLDVGVKLHEL-AERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HhCCCCCceeHHHHHHHHhccchHHHHHHHHHH-HHHhCCCcchHHHHHHHHHHHHc
Q ss_pred CcHHHHHHHhhc------------------cCcHHHHHHHHHhhcCC---------------------ccHHHHHHHHHH
Q 000707 1191 GRYQEACSQLQD------------------AGCWTDAATLAATHLKG---------------------SDYARVLQRWAD 1231 (1341)
Q Consensus 1191 g~~~~a~~~l~~------------------~~~w~~a~~la~~~l~~---------------------~~~~~~~~r~a~ 1231 (1341)
|++++|.+.+.. .|++.||+.+-+.-+.. ++..++...-..
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Q ss_pred HhhcccccHHHHHH-HHHHhCCHHHHHHHHHh-----------------cCCchHHHHHHHHHHHHhhhh
Q 000707 1232 HVHHVEHNIWRALI-LYVAAGGLQEALAALRE-----------------AQHPDTAAMFVLACREIYAEI 1283 (1341)
Q Consensus 1232 ~l~~~~~~~~~A~~-~~~~~g~~~~a~~~l~~-----------------~~~~~~aa~~~~~~~e~~~~~ 1283 (1341)
.=........+|++ .|.+.|++.+|.+++.+ .+..+.|--+.+.-.+.+..|
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
No 451
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.60 E-value=2.4e+02 Score=31.60 Aligned_cols=140 Identities=7% Similarity=-0.048 Sum_probs=77.0
Q ss_pred CceEeCCCCeEEEE-cCCeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEE
Q 000707 28 GSADLSPSGLLAFA-SGSSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAA 106 (1341)
Q Consensus 28 ~a~~~s~~gllA~g-s~~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LAS 106 (1341)
+-.--+|+|..-.| ....=.++.+..+.+..-+.+|.- .....|-. --+.++|..+- -.+-..
T Consensus 112 NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v-~~i~~~v~--IsNgl~Wd~d~-------------K~fY~i 175 (310)
T KOG4499|consen 112 NDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQV-ELIWNCVG--ISNGLAWDSDA-------------KKFYYI 175 (310)
T ss_pred ccCccCCCCceeeeeeccccccccccccEEEEeccCCCc-eeeehhcc--CCccccccccC-------------cEEEEE
Confidence 44555788844222 111112556666777666777764 10000000 01346666442 233445
Q ss_pred EeCCCcEEEEe--CCCCeEE-----EEecC---CCCCCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEe
Q 000707 107 ADRHGRVALLD--FRLRSVV-----LWIDP---DPNPKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYD 176 (1341)
Q Consensus 107 g~~dG~I~vWD--v~tg~~~-----~~l~~---~~h~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~ 176 (1341)
-+.+-+|.-|| ..+|... -.+.- .++.. --+++..-+ +.+.+++-.-++|...|..||+.+..+.
T Consensus 176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~--PDGm~ID~e---G~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLE--PDGMTIDTE---GNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCC--CCcceEccC---CcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 55666777788 4555432 11110 01111 122333222 3666777778899999999999999988
Q ss_pred CCCCceEEEEEc
Q 000707 177 ASPEYLSCIRRN 188 (1341)
Q Consensus 177 ~~~~~v~~~~fs 188 (1341)
.+...++|++|-
T Consensus 251 lPt~qitsccFg 262 (310)
T KOG4499|consen 251 LPTPQITSCCFG 262 (310)
T ss_pred cCCCceEEEEec
Confidence 888899999885
No 452
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=54.18 E-value=2.3e+02 Score=31.46 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=37.9
Q ss_pred cCC-CceEEEEcCCeEEEEEcCC--CceeEEEecCCCccceEEEEEcCCCCEEEEEecCC
Q 000707 263 PHW-RHIIFVTFPRELVVFDLQY--ETPLFSAALPRGCAKFLDVLADPNNDLLYCAHLDG 319 (1341)
Q Consensus 263 pdg-~~l~~~~~d~~I~iwDl~t--~~~l~~~~l~~~~~~~~~v~~~pdg~~L~s~~~Dg 319 (1341)
..| ..|+.+....+|.+||+.. .+.+.+++. -+.+.++..|..|++|++.-++.
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~ 81 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKN 81 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeec
Confidence 335 3454557778999999983 344555542 25678899999999999986553
No 453
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=53.99 E-value=4.6e+02 Score=31.85 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=49.1
Q ss_pred hHHHhcCcHHHHHHHhhc--cCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccH---HHHHHHHHHhCCHHHHHHH
Q 000707 1185 HLLCAVGRYQEACSQLQD--AGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNI---WRALILYVAAGGLQEALAA 1259 (1341)
Q Consensus 1185 ~~~~~~g~~~~a~~~l~~--~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~---~~A~~~~~~~g~~~~a~~~ 1259 (1341)
..+...|+.++|.+.|.. ...|.+.+.+...++..++..+.+++--..+.....+- ..--.+++..+.+.+|-+-
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~ 350 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA 350 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555566666666655542 25677777777777755665554444333332222121 1222255689999999988
Q ss_pred HHh--cCCchHHH
Q 000707 1260 LRE--AQHPDTAA 1270 (1341)
Q Consensus 1260 l~~--~~~~~~aa 1270 (1341)
|.+ ...|+-..
T Consensus 351 le~al~~~P~~~~ 363 (398)
T PRK10747 351 FRAALKQRPDAYD 363 (398)
T ss_pred HHHHHhcCCCHHH
Confidence 877 34455554
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=53.63 E-value=46 Score=42.36 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=43.3
Q ss_pred CcEEEEEeCCCcEEEEeCCC----CeEEEEecCCCC-------------------CCCCeeEEEEeecCC-CccEEEEEe
Q 000707 101 HLLLAAADRHGRVALLDFRL----RSVVLWIDPDPN-------------------PKLGIQDLCWIVSKP-DSFVLAAIN 156 (1341)
Q Consensus 101 g~~LASg~~dG~I~vWDv~t----g~~~~~l~~~~h-------------------~~~~V~~l~wsp~~~-~~~lLas~s 156 (1341)
...|+.+..||.+..-+... +..........+ ....+..++.+...- +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 45577777888877666543 332222211111 011345556655111 127999999
Q ss_pred CCCeEEEEECCCCeEEEEEeC
Q 000707 157 GPSVLSLYNTTSASCMWKYDA 177 (1341)
Q Consensus 157 ~d~~i~lWd~~tg~~i~~~~~ 177 (1341)
.|++|++||+.++.++...+.
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999877765
No 455
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=53.43 E-value=1.4e+02 Score=42.02 Aligned_cols=102 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhh
Q 000707 1109 EGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTH 1185 (1341)
Q Consensus 1109 ~~~e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~ 1185 (1341)
+.-+.+...++.++..|+.++|.+ .|++..|+++.+..... +..+.+.-....++ .|..|+..|+.++|++
T Consensus 60 ~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~-~~~~~~~~~~~~l~-----~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 60 NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT-TMLLSTPEGRQALQ-----QARLLATTGRTEEALA 133 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH-HHHhcCCchhhHHH-----HHHHHHhCCCHHHHHH
Confidence 345555778899999999999987 88999999876543211 11111111111122 2344555666666665
Q ss_pred HHHhc-----CcHHHHHHHhh----ccCcHHHHHHHHHhh
Q 000707 1186 LLCAV-----GRYQEACSQLQ----DAGCWTDAATLAATH 1216 (1341)
Q Consensus 1186 ~~~~~-----g~~~~a~~~l~----~~~~w~~a~~la~~~ 1216 (1341)
.|-.. .....|..|++ ..++|.+|+..-+.-
T Consensus 134 ~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 134 SYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred HHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 44332 11222333333 246777776665544
No 456
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=52.96 E-value=3.1e+02 Score=38.58 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH---hhcCCCCCch
Q 000707 1112 QAIQNRVHELVSVGNLEAAVSL---LLSTSPESSY 1143 (1341)
Q Consensus 1112 e~~~~~~~~~~~lG~~~~av~l---Ll~~~pe~~~ 1143 (1341)
+....++..+...|+.++|++. +++..|+++.
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 3445788899999999999884 5677888763
No 457
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.89 E-value=3.3e+02 Score=36.55 Aligned_cols=80 Identities=16% Similarity=0.225 Sum_probs=52.1
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHH-------------HHHHHHHHHHhhhhhcccCCCCC
Q 000707 1226 LQRWADHVHHVEHNIWRALILYVAAGGLQEALAALREAQHPDTA-------------AMFVLACREIYAEIITNLENSDD 1292 (1341)
Q Consensus 1226 ~~r~a~~l~~~~~~~~~A~~~~~~~g~~~~a~~~l~~~~~~~~a-------------a~~~~~~~e~~~~~~~~~~~~~~ 1292 (1341)
++.-++++.+.+ +...|-+||....+|-+.+..|-..+.|.-| -...-||-+.....+--
T Consensus 1197 i~~vGdrcf~~~-~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQ------ 1269 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEK-MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQ------ 1269 (1666)
T ss_pred HHHHhHHHhhhh-hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHH------
Confidence 344555655443 4568888998888898888888887777665 12444565554443331
Q ss_pred CCCCccCCcCCCCCCCC--CCchhhhHHHHHHHH
Q 000707 1293 ESGSSTNNVPDNLPGLS--PENEDVRAVGEYFGQ 1324 (1341)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 1324 (1341)
+=||+ .+-|+|..+.|||+.
T Consensus 1270 ------------iCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1270 ------------ICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred ------------hcCceEEEehHhHHHHHHHHHh
Confidence 33666 677888888887764
No 458
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=52.79 E-value=4.1e+02 Score=30.51 Aligned_cols=199 Identities=11% Similarity=0.098 Sum_probs=110.1
Q ss_pred ceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCC--cEEEEeCCCCeEEEEecCCCC
Q 000707 55 QLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHG--RVALLDFRLRSVVLWIDPDPN 132 (1341)
Q Consensus 55 ~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG--~I~vWDv~tg~~~~~l~~~~h 132 (1341)
+++.+++..+. .+.-.+.|.++ |.++-|.+.-| .|+.+|+.+|+.+....++..
T Consensus 34 ~vv~~ypHd~~----------aFTQGL~~~~~--------------g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~ 89 (264)
T PF05096_consen 34 EVVETYPHDPT----------AFTQGLEFLDD--------------GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR 89 (264)
T ss_dssp EEEEEEE--TT-----------EEEEEEEEET--------------TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT
T ss_pred EEEEECCCCCc----------ccCccEEecCC--------------CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc
Confidence 55666664443 37888888654 56788888777 799999999998877655431
Q ss_pred CCCCeeEEEEeecCCCccEEEEEeCCCeEEEEECCCCeEEEEEeCCCCceEEEEEcCCCCCEEEEEeCCCeEEEEEecCC
Q 000707 133 PKLGIQDLCWIVSKPDSFVLAAINGPSVLSLYNTTSASCMWKYDASPEYLSCIRRNPFDARHFCVLGLKGLLLSVRVLGQ 212 (1341)
Q Consensus 133 ~~~~V~~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~~i~~~~~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d~~~~ 212 (1341)
- =-.+++...+ ++..-.-.++...+||..+-+.+.++.+. ..-..++. |+..|........++.+|...-
T Consensus 90 -~-FgEGit~~~d----~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f 159 (264)
T PF05096_consen 90 -Y-FGEGITILGD----KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETF 159 (264)
T ss_dssp ----EEEEEEETT----EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-
T ss_pred -c-cceeEEEECC----EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCccc
Confidence 1 1133444321 33333345688899999998888888773 44455553 6677777655677877764321
Q ss_pred cccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE-cCCeEEEEEcCCCceeEEE
Q 000707 213 KEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT-FPRELVVFDLQYETPLFSA 291 (1341)
Q Consensus 213 ~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~-~d~~I~iwDl~t~~~l~~~ 291 (1341)
...+.+.+..+...+. .+.-+-|- +|. +.+.. ....|...|.++|+.+..+
T Consensus 160 ----~~~~~i~V~~~g~pv~----------------------~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 160 ----KEVRTIQVTDNGRPVS----------------------NLNELEYI-NGK-IYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp ----SEEEEEE-EETTEE-------------------------EEEEEEE-TTE-EEEEETTSSEEEEEETTT-BEEEEE
T ss_pred ----ceEEEEEEEECCEECC----------------------CcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 1133333321110010 12233333 443 33333 4677889999999998877
Q ss_pred ecCC-------C------ccceEEEEEcCCCCEEEEE
Q 000707 292 ALPR-------G------CAKFLDVLADPNNDLLYCA 315 (1341)
Q Consensus 292 ~l~~-------~------~~~~~~v~~~pdg~~L~s~ 315 (1341)
.+.. . ....-.++..|+++.|+..
T Consensus 212 Dls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 212 DLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp E-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 4410 0 1234567887776655544
No 459
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=52.27 E-value=5.1e+02 Score=31.43 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=41.1
Q ss_pred CCC-EEEEEeCCCc--EEEEeCCCCcEEEEEeecC-CCeEEEEEcCCCcEEEEecCCcccccCcccCeEEEEEccCCcee
Q 000707 528 AVP-LVALGTQSGA--VDVVDVSANAVTASFSVHN-GTVRGLRWLGNSRLVSFSYSQVNEKSGGYINRLVVTCLRSGINR 603 (1341)
Q Consensus 528 ~~~-llAsGs~DGt--I~lWDl~tg~~~~~l~~H~-~~V~~l~fs~d~~llS~s~d~~~~~sg~~~~~i~lwD~~tG~~~ 603 (1341)
+|+ +|..+..||. +.+.|+.+++.. +|.-+. ....+..++++++.+-+-.+ ..+|+-.|++|.+.+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~---------~~~l~~vdL~T~e~~ 115 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKN---------GRSLRRVDLDTLEER 115 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEET---------TTEEEEEETTT--EE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEEC---------CCeEEEEECCcCcEE
Confidence 554 5555555664 667788887654 444333 22224555666654432211 137888899998866
Q ss_pred eeEEeccCCCCCeEEEEE--CCCCCEEE
Q 000707 604 AFRVLQKPERAPIRALRA--SSSGRYLL 629 (1341)
Q Consensus 604 ~l~~l~~~~~~~I~~i~~--SpdG~~La 629 (1341)
.+..+.. ..+-...+ +.|++.++
T Consensus 116 ~vy~~p~---~~~g~gt~v~n~d~t~~~ 140 (386)
T PF14583_consen 116 VVYEVPD---DWKGYGTWVANSDCTKLV 140 (386)
T ss_dssp EEEE--T---TEEEEEEEEE-TTSSEEE
T ss_pred EEEECCc---ccccccceeeCCCccEEE
Confidence 6655432 33332333 45666654
No 460
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=50.60 E-value=76 Score=36.65 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHh
Q 000707 1241 WRALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1241 ~~A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
.++..+|+.+|.+.+|++++.+
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 4777788889999999998875
No 461
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=50.09 E-value=1.6e+02 Score=38.67 Aligned_cols=127 Identities=14% Similarity=0.149 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcchhh
Q 000707 1109 EGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLSGTH 1185 (1341)
Q Consensus 1109 ~~~e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~~v~ 1185 (1341)
+..+....+++.+..+|..++|.. -+++..|++.....+-.. +|. -.+-++.+.-.+...|.. += +.+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~--~L~---~~~~~eeA~~~~~~~l~~-~p-~~~~~ 156 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR--GVK---RQQGIEAGRAEIELYFSG-GS-SSARE 156 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH--HHH---HhccHHHHHHHHHHHhhc-CC-CCHHH
Confidence 335666788999999999988887 467888886432222110 110 022334443333332222 11 22222
Q ss_pred HHHhcCcHHHHHHHhhccCcHHHHHHHHHhhc-CCccHHHHHHHHHHHhhcccccHHHHHHHHHHh
Q 000707 1186 LLCAVGRYQEACSQLQDAGCWTDAATLAATHL-KGSDYARVLQRWADHVHHVEHNIWRALILYVAA 1250 (1341)
Q Consensus 1186 ~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l-~~~~~~~~~~r~a~~l~~~~~~~~~A~~~~~~~ 1250 (1341)
++.+. ..|+..|+.+||..+=...+ ...+..+.+-.||.-|...+. .++|...|.++
T Consensus 157 ~~~~a-------~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a 214 (694)
T PRK15179 157 ILLEA-------KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAG 214 (694)
T ss_pred HHHHH-------HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence 22222 35677777777776655554 334667888888888876664 57888888776
No 462
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.84 E-value=3.1e+02 Score=34.13 Aligned_cols=36 Identities=19% Similarity=0.411 Sum_probs=29.9
Q ss_pred cceEEEEEccCC---CceEEEEcCCeEEEEEcCCCceeE
Q 000707 254 LYMVKFTFSPHW---RHIIFVTFPRELVVFDLQYETPLF 289 (1341)
Q Consensus 254 ~~v~~~afSpdg---~~l~~~~~d~~I~iwDl~t~~~l~ 289 (1341)
..+.+++++|+. .+++..+.|+.|+|||+..-+.+.
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhh
Confidence 356788999986 788888999999999999776654
No 463
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.69 E-value=2e+02 Score=34.97 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=51.2
Q ss_pred cCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEEECCCCCccccccccCCC-CCCcEEEEEEcCCCCCCCCCeEEEEE
Q 000707 792 THREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVFDLDSQDPLANSLLQPQF-PGTLVLELDWLPTRTDKNDPLVLCIA 870 (1341)
Q Consensus 792 gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IWDl~~~~~l~~~l~~gh~-~~~~V~~l~ws~~~~~~g~~~~Las~ 870 (1341)
..+|+|++|+|||| + +.||+--.|.+|.+++....++.. .+.+-|. ....|+++.|+.. ..+ |..
T Consensus 64 ~d~G~I~SIkFSlD--n----kilAVQR~~~~v~f~nf~~d~~~l-~~~~~ck~k~~~IlGF~W~~s-----~e~--A~i 129 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLD--N----KILAVQRTSKTVDFCNFIPDNSQL-EYTQECKTKNANILGFCWTSS-----TEI--AFI 129 (657)
T ss_pred cCCCceeEEEeccC--c----ceEEEEecCceEEEEecCCCchhh-HHHHHhccCcceeEEEEEecC-----eeE--EEE
Confidence 35789999999999 3 678999999999999874333211 1112233 2345999999864 433 333
Q ss_pred ECCCcEEEEEccCC
Q 000707 871 GADSSFRLIEVNTE 884 (1341)
Q Consensus 871 s~DgtIrvWdv~~~ 884 (1341)
+ |.-+.+|.+...
T Consensus 130 ~-~~G~e~y~v~pe 142 (657)
T KOG2377|consen 130 T-DQGIEFYQVLPE 142 (657)
T ss_pred e-cCCeEEEEEchh
Confidence 3 445778876543
No 464
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=48.29 E-value=57 Score=25.33 Aligned_cols=32 Identities=9% Similarity=0.105 Sum_probs=24.6
Q ss_pred cCCCceEEEE-cCCeEEEEEcCCCceeEEEecC
Q 000707 263 PHWRHIIFVT-FPRELVVFDLQYETPLFSAALP 294 (1341)
Q Consensus 263 pdg~~l~~~~-~d~~I~iwDl~t~~~l~~~~l~ 294 (1341)
||++.+..+. .+++|.++|+.+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666555 4789999999999888877653
No 465
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.15 E-value=2.4e+02 Score=37.29 Aligned_cols=20 Identities=30% Similarity=0.253 Sum_probs=14.5
Q ss_pred HHHHHHHhCCHHHHHHHHHh
Q 000707 1243 ALILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1243 A~~~~~~~g~~~~a~~~l~~ 1262 (1341)
-..+|...|++.+|.+++.+
T Consensus 165 la~~~~~~~~~~~A~~~~~~ 184 (899)
T TIGR02917 165 LAQLALAENRFDEARALIDE 184 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33456678888888888876
No 466
>PLN03218 maturation of RBCL 1; Provisional
Probab=47.95 E-value=2e+02 Score=39.75 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcC-----CCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcc------h
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLST-----SPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLS------G 1183 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~-----~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~------~ 1183 (1341)
..++..+.+.|+.++|++++-+- .|+. ..|.-- +.+....+-++.+.+++.. |...|.-.+ -
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsL-----I~a~~k~G~~eeA~~l~~e-M~k~G~~pd~~tynsL 690 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSAL-----VDVAGHAGDLDKAFEILQD-ARKQGIKLGTVSYSSL 690 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH-----HHHHHhCCCHHHHHHHHHH-HHHcCCCCCHHHHHHH
Confidence 45677778888888888854332 2331 122222 2222222334455444444 444443222 2
Q ss_pred hhHHHhcCcHHHHHHHhhc
Q 000707 1184 THLLCAVGRYQEACSQLQD 1202 (1341)
Q Consensus 1184 v~~~~~~g~~~~a~~~l~~ 1202 (1341)
+..||++|++++|.++++.
T Consensus 691 I~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 691 MGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3567777777777777653
No 467
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=47.88 E-value=3.6e+02 Score=32.13 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=10.4
Q ss_pred HHHHHhCCHHHHHHHHHh
Q 000707 1245 ILYVAAGGLQEALAALRE 1262 (1341)
Q Consensus 1245 ~~~~~~g~~~~a~~~l~~ 1262 (1341)
.+|...|++.+|.+.+.+
T Consensus 222 ~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 222 DLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 345556666666666554
No 468
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=47.62 E-value=5.3e+02 Score=30.28 Aligned_cols=123 Identities=17% Similarity=0.151 Sum_probs=65.0
Q ss_pred eEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCC------CC-cEEEEEee-----cCCCeEEEEEcCCC
Q 000707 504 VTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVS------AN-AVTASFSV-----HNGTVRGLRWLGNS 571 (1341)
Q Consensus 504 vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~------tg-~~~~~l~~-----H~~~V~~l~fs~d~ 571 (1341)
.+.|+++| .+++-++....|+..+||.. .. .++.++.. -....+++.|....
T Consensus 25 ~WGia~~p----------------~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 25 AWGLSYRP----------------GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSD 88 (336)
T ss_pred cceeEecC----------------CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCC
Confidence 35678888 46787888888999999986 12 23334332 12467888887654
Q ss_pred cEEEEecCCccc---ccCcccCeEEEEEccCCce---eeeEEeccC-CCCCeEEEEECC--CCCEE-EEEECCCcEEEEe
Q 000707 572 RLVSFSYSQVNE---KSGGYINRLVVTCLRSGIN---RAFRVLQKP-ERAPIRALRASS--SGRYL-LILFRDAPVEVWA 641 (1341)
Q Consensus 572 ~llS~s~d~~~~---~sg~~~~~i~lwD~~tG~~---~~l~~l~~~-~~~~I~~i~~Sp--dG~~L-as~s~D~~I~vWD 641 (1341)
.++......... -..+.+++|.-|...-+.. ..+..+... ...-.+.+++-. .+.+| |+-+..++|.|+|
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 442211100000 0112345677776432221 111112111 112234555553 34555 4558889999998
Q ss_pred c
Q 000707 642 M 642 (1341)
Q Consensus 642 l 642 (1341)
-
T Consensus 169 ~ 169 (336)
T TIGR03118 169 G 169 (336)
T ss_pred C
Confidence 5
No 469
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=45.47 E-value=86 Score=41.09 Aligned_cols=80 Identities=26% Similarity=0.245 Sum_probs=58.3
Q ss_pred HHHHHHHHHccCCcchhhHHHhc----CcHHHHH----HHhhccCcHHHHH--HHHHhhcCCccHHHHHHHHHHHhhccc
Q 000707 1168 KVVAANMVRNDRSLSGTHLLCAV----GRYQEAC----SQLQDAGCWTDAA--TLAATHLKGSDYARVLQRWADHVHHVE 1237 (1341)
Q Consensus 1168 k~~a~~l~~~~~~~~~v~~~~~~----g~~~~a~----~~l~~~~~w~~a~--~la~~~l~~~~~~~~~~r~a~~l~~~~ 1237 (1341)
=..|.+|.+.|++++|...|.-+ -+...|- ...+.+|.-++|+ +|..+||++++. +...+|++...+=+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-ELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHhcc
Confidence 45677888888888888766433 3333333 3457788888886 688899999999 99999999987655
Q ss_pred ccHHHHHHHHHH
Q 000707 1238 HNIWRALILYVA 1249 (1341)
Q Consensus 1238 ~~~~~A~~~~~~ 1249 (1341)
|+.+|+.||.+
T Consensus 222 -~i~qA~~cy~r 232 (895)
T KOG2076|consen 222 -NINQARYCYSR 232 (895)
T ss_pred -cHHHHHHHHHH
Confidence 46677777654
No 470
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=45.18 E-value=2.3e+02 Score=31.39 Aligned_cols=117 Identities=20% Similarity=0.227 Sum_probs=73.1
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHH--ccCCcchhhHHHhcCcHHH
Q 000707 1118 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVR--NDRSLSGTHLLCAVGRYQE 1195 (1341)
Q Consensus 1118 ~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~--~~~~~~~v~~~~~~g~~~~ 1195 (1341)
+-.+++.| -+..++.|+.|+ -.+.-+|- +--++|+. |.+|.+... .|+ +.|.+|-|.+
T Consensus 170 IgaLvkNd-sq~vi~fLltTe-----ivPLcLrI----me~gSElS----ktvaifI~qkil~d-DvGLqYiCqT----- 229 (315)
T COG5209 170 IGALVKND-SQYVIKFLLTTE-----IVPLCLRI----MELGSELS----KTVAIFIFQKILGD-DVGLQYICQT----- 229 (315)
T ss_pred HHHHHhCC-CHHHHHHHHhhh-----HHHHHHHH----HHhhhHHH----HHHHHHHHHHHhcc-chhHHHHHHH-----
Confidence 44455544 456778898888 33443433 33345554 556665554 444 7899998876
Q ss_pred HHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhccccc-H-HHHHHHHHHhCCHHHHHHHHHhc---C-CchHH
Q 000707 1196 ACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHN-I-WRALILYVAAGGLQEALAALREA---Q-HPDTA 1269 (1341)
Q Consensus 1196 a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~-~-~~A~~~~~~~g~~~~a~~~l~~~---~-~~~~a 1269 (1341)
+.++. |+ ..++..-+.||.+.... + ..|+.||+.+.+-..|-++|+.+ + +-|.+
T Consensus 230 -------~eRFy-Av------------~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL~~~lP~~Lrd~tf 289 (315)
T COG5209 230 -------FERFY-AV------------NLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALLSSKLPDGLRDDTF 289 (315)
T ss_pred -------HHHHH-HH------------HHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHHhccCCccccccHH
Confidence 22221 22 34566667777555432 2 78999999999988999999873 3 44566
Q ss_pred HHHHH
Q 000707 1270 AMFVL 1274 (1341)
Q Consensus 1270 a~~~~ 1274 (1341)
++++.
T Consensus 290 s~vl~ 294 (315)
T COG5209 290 SLVLA 294 (315)
T ss_pred HHHHH
Confidence 66665
No 471
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.16 E-value=1e+02 Score=34.28 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=38.8
Q ss_pred cEEEEEeCCCeEEEEECCCCeEEEEE-------e-------CCCCceEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 000707 150 FVLAAINGPSVLSLYNTTSASCMWKY-------D-------ASPEYLSCIRRNPFDARHFCVLGLKGLLLSVR 208 (1341)
Q Consensus 150 ~lLas~s~d~~i~lWd~~tg~~i~~~-------~-------~~~~~v~~~~fsP~d~~~la~~~~dG~i~~~d 208 (1341)
.+|++...+|.+.+||+.+++++..- . .....|..+.++. +|.-+++.+. |..+.|+
T Consensus 23 ~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 23 SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEeC-CCEEEec
Confidence 67888999999999999998876432 1 1234566666665 5666666553 5566654
No 472
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=44.86 E-value=98 Score=31.67 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=21.1
Q ss_pred HHHHHHHHHcCCHHHHHHHhhcCCCC
Q 000707 1115 QNRVHELVSVGNLEAAVSLLLSTSPE 1140 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~lLl~~~pe 1140 (1341)
++.+.++|+.|+++.|++.+=+-.|+
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~ 30 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPE 30 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHH
Confidence 45678899999999999988666644
No 473
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=44.79 E-value=1.2e+02 Score=32.36 Aligned_cols=36 Identities=17% Similarity=0.310 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEccC
Q 000707 848 LVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVNT 883 (1341)
Q Consensus 848 ~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~~ 883 (1341)
.|.+++|+|.--......+|++-+.+|.+.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 688999999522223455799999999999998664
No 474
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=44.16 E-value=3e+02 Score=32.68 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=33.9
Q ss_pred cEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeE---EEEec-C-CCCCCCCeeEEEEeecC
Q 000707 77 FVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSV---VLWID-P-DPNPKLGIQDLCWIVSK 146 (1341)
Q Consensus 77 ~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~---~~~l~-~-~~h~~~~V~~l~wsp~~ 146 (1341)
.-++++|.|+ |+++++ ...|+|++.+ .+|.. +..++ . ..... ...++++.|+-
T Consensus 3 ~P~~~a~~pd--------------G~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~-gllgia~~p~f 60 (331)
T PF07995_consen 3 NPRSMAFLPD--------------GRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGER-GLLGIAFHPDF 60 (331)
T ss_dssp SEEEEEEETT--------------SCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTB-SEEEEEE-TTC
T ss_pred CceEEEEeCC--------------CcEEEE-eCCceEEEEe-CCCcCcceecccccccccccC-Ccccceecccc
Confidence 3568999986 455554 6699999999 56654 23321 1 12234 78999999963
No 475
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=43.97 E-value=2.4e+02 Score=28.42 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=19.1
Q ss_pred hhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhc
Q 000707 1183 GTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHL 1217 (1341)
Q Consensus 1183 ~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l 1217 (1341)
+..+|...+.+.+|+-.+...|+|++|+.++-.++
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~ 109 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHL 109 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcc
Confidence 44555555555555555555555666555555554
No 476
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.95 E-value=1.1e+02 Score=40.40 Aligned_cols=90 Identities=23% Similarity=0.355 Sum_probs=53.2
Q ss_pred ccCCCCCCCCCCceEeCCCC-eEEEEcCCeEEEEeC-CC---------cce---eEeecCCCCCCCCCCCCCCCcEEEEE
Q 000707 17 MLPGPPSRNNFGSADLSPSG-LLAFASGSSISILDS-RS---------LQL---ISTIPIPPPTSAGSVASLSPFVTAVK 82 (1341)
Q Consensus 17 ~lpg~~~~~~~~a~~~s~~g-llA~gs~~~V~v~d~-~~---------~~~---~~~l~~H~~~~~~~~~~~~~~Vt~v~ 82 (1341)
++|-.+-.-.|.-+..||+| +||..+...|.|... +. |+. ..+++-... .+-...+..|..|+
T Consensus 77 L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~~~~~~~i~qv~ 153 (717)
T PF10168_consen 77 LLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFTSNSSLEIKQVR 153 (717)
T ss_pred eecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechh---hccCCCCceEEEEE
Confidence 34443323356788999999 777544444444443 22 111 122221111 00012245899999
Q ss_pred EccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCC
Q 000707 83 WIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRL 120 (1341)
Q Consensus 83 ~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~t 120 (1341)
|+|.+ +++..|+.=..|+++|++|+..
T Consensus 154 WhP~s-----------~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 154 WHPWS-----------ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred EcCCC-----------CCCCeEEEEecCCEEEEEecCC
Confidence 99985 4577888888899999999854
No 477
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.66 E-value=55 Score=36.69 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=16.6
Q ss_pred HHHhcCcHHHHHHHhhccCcHHHHHHHHHhh
Q 000707 1186 LLCAVGRYQEACSQLQDAGCWTDAATLAATH 1216 (1341)
Q Consensus 1186 ~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~ 1216 (1341)
++.++-.++.|.-.++....|.||+.+....
T Consensus 67 lfhAAKayEqaamLake~~klsEvvdl~eKA 97 (308)
T KOG1585|consen 67 LFHAAKAYEQAAMLAKELSKLSEVVDLYEKA 97 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4444445555555555555555555555443
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=43.36 E-value=2.6e+02 Score=36.50 Aligned_cols=111 Identities=11% Similarity=0.110 Sum_probs=68.6
Q ss_pred cCCEEEEEeCCCcEEEEECCC-------C-------c----eee-e-ccCCCcEEEEEEc--cCCCCCCCCCEEEEEECC
Q 000707 764 RLPHVVMGDRSGNIRWWDVTT-------G-------H----SSQ-F-STHREGIRRIKFS--PVVPGDRSRGRIAVLFHD 821 (1341)
Q Consensus 764 dg~~LasGs~DgtI~lWDl~t-------g-------~----~~~-l-~gH~~~V~~V~fS--P~~~gd~~~~~Las~s~D 821 (1341)
+...|+.+..||.|.+|.+.+ . . ... | .--...+++++++ .. . ..||++++-
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~--~----rlIAVSsNs 186 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKK--S----RLIAVSSNS 186 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCc--c----eEEEEecCC
Confidence 456899999999999997632 0 0 000 1 1123467888887 43 1 567888888
Q ss_pred CeEEEEECCCCC-ccccccccCCCCCCcEEEEEEcCCCCCCCCCeEEEEEECCCcEEEEEcc
Q 000707 822 NTFSVFDLDSQD-PLANSLLQPQFPGTLVLELDWLPTRTDKNDPLVLCIAGADSSFRLIEVN 882 (1341)
Q Consensus 822 gtI~IWDl~~~~-~l~~~l~~gh~~~~~V~~l~ws~~~~~~g~~~~Las~s~DgtIrvWdv~ 882 (1341)
..|.||=....+ +.... ..|.....|-+|.|.++..+...-..|++++-.|.+-+|++.
T Consensus 187 ~~VTVFaf~l~~~r~~~~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHV--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEEeccccccccc--cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888554321 11110 112223458899999873222111478889999999998883
No 479
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=42.79 E-value=7.1e+02 Score=30.43 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=39.8
Q ss_pred eEEEEee-cCCEEEEEeCCCcEEEEECCCCce-eee---ccCCCcEEEEEEccCCCCCCCCCEEEEEECCCeEEEE
Q 000707 757 LITAMAY-RLPHVVMGDRSGNIRWWDVTTGHS-SQF---STHREGIRRIKFSPVVPGDRSRGRIAVLFHDNTFSVF 827 (1341)
Q Consensus 757 ~v~sla~-dg~~LasGs~DgtI~lWDl~tg~~-~~l---~gH~~~V~~V~fSP~~~gd~~~~~Las~s~DgtI~IW 827 (1341)
.+.++.| +.+.++.++.+|.|.... ..|+. ... ..-....++|.|.++ +...+.+.+|.|--|
T Consensus 329 ~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~-------~~g~~~G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDD-------KKGFVLGNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCC-------CceEEEeCCcEEEEe
Confidence 3778888 455677777888776664 34442 221 233467889999776 345555688877544
No 480
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=41.22 E-value=6.3e+02 Score=29.34 Aligned_cols=93 Identities=20% Similarity=0.247 Sum_probs=59.6
Q ss_pred CeEEEEeCCCcceeEeecCCCCCCCCCCCCCCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEe------CCCcEEEEe
Q 000707 44 SSISILDSRSLQLISTIPIPPPTSAGSVASLSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAAD------RHGRVALLD 117 (1341)
Q Consensus 44 ~~V~v~d~~~~~~~~~l~~H~~~~~~~~~~~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~------~dG~I~vWD 117 (1341)
..|.+||..+.|-...-.+=.+ .|+.++|.-+ ..++|+|. ....+..||
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G-----------~V~~l~~~~~--------------~~Llv~G~ft~~~~~~~~la~yd 70 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISG-----------TVTDLQWASN--------------NQLLVGGNFTLNGTNSSNLATYD 70 (281)
T ss_pred CEEEEEECCCCEeecCCCCceE-----------EEEEEEEecC--------------CEEEEEEeeEECCCCceeEEEEe
Confidence 4788999888776554444444 8999999843 36677775 456788999
Q ss_pred CCCCeEEEEecCCC-----CCCCCeeEEEEeecCCCccEEEEEe---CCCeEEEEEC
Q 000707 118 FRLRSVVLWIDPDP-----NPKLGIQDLCWIVSKPDSFVLAAIN---GPSVLSLYNT 166 (1341)
Q Consensus 118 v~tg~~~~~l~~~~-----h~~~~V~~l~wsp~~~~~~lLas~s---~d~~i~lWd~ 166 (1341)
..+...... .+ -.+ +|..+.+...+. +++.+++. ++..|.-||-
T Consensus 71 ~~~~~w~~~---~~~~s~~ipg-pv~a~~~~~~d~-~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 71 FKNQTWSSL---GGGSSNSIPG-PVTALTFISNDG-SNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred cCCCeeeec---CCcccccCCC-cEEEEEeeccCC-ceEEEeceecCCCceEEEEcC
Confidence 987654332 22 124 888887765432 25555543 3346777764
No 481
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.89 E-value=5.2e+02 Score=34.92 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHH------------Hhh
Q 000707 1167 VKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWAD------------HVH 1234 (1341)
Q Consensus 1167 ~k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~------------~l~ 1234 (1341)
++-|+.-+..+++++.|--+|..+-.+.....+|+..|++.-|+.-|+..-+.+-.++||-.-.+ |+.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~ii 1276 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNII 1276 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEE
Confidence 45666777778887777788889999999999999999999999999988655555555543222 221
Q ss_pred cccccHHHHHHHHHHhCCHHHHHHHHHhcCCchHH--HHHHH-----------HHHHHhhhhhcc
Q 000707 1235 HVEHNIWRALILYVAAGGLQEALAALREAQHPDTA--AMFVL-----------ACREIYAEIITN 1286 (1341)
Q Consensus 1235 ~~~~~~~~A~~~~~~~g~~~~a~~~l~~~~~~~~a--a~~~~-----------~~~e~~~~~~~~ 1286 (1341)
-..-.+..-+..|-.-|.|.+.+.||-..==.++| +||.| .-+|+++..++-
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km~EHl~LFwsR 1341 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKMMEHLKLFWSR 1341 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 11111356777899999999999998762223333 33443 267888888874
No 482
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=40.69 E-value=3.2e+02 Score=28.86 Aligned_cols=85 Identities=12% Similarity=0.017 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHccCCcc----hh
Q 000707 1112 QAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYANALRAVALSSAVSRSLLELAVKVVAANMVRNDRSLS----GT 1184 (1341)
Q Consensus 1112 e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~~~~~----~v 1184 (1341)
|.+..++-.+...|+++.|.+ +|...+|++..|+-+-- +.-...+-|+.++..++.-+...=++-. +-
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG-----~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLG-----ECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 344577889999999999988 88899999886654311 1223466788888888875544333222 22
Q ss_pred hHHHhcCcHHHHHHHhh
Q 000707 1185 HLLCAVGRYQEACSQLQ 1201 (1341)
Q Consensus 1185 ~~~~~~g~~~~a~~~l~ 1201 (1341)
+.+.+.|+..+|.+.++
T Consensus 111 ~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 111 ECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 56788899999886654
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=40.33 E-value=3.5e+02 Score=31.68 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCceEeCCCC-eEEEEcC-CeEEEEeCCCcceeEeecCCCC
Q 000707 27 FGSADLSPSG-LLAFASG-SSISILDSRSLQLISTIPIPPP 65 (1341)
Q Consensus 27 ~~a~~~s~~g-llA~gs~-~~V~v~d~~~~~~~~~l~~H~~ 65 (1341)
+++|+--++| +|++..+ ++|.+.|+++++++-.|.|...
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~ 186 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRN 186 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCC
Confidence 4677877787 7777755 7999999999999999988743
No 484
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=39.23 E-value=1.1e+03 Score=31.54 Aligned_cols=171 Identities=11% Similarity=0.125 Sum_probs=90.4
Q ss_pred CCCcEEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEe------C---CC------CeEEEEecCCCCCCCCee
Q 000707 74 LSPFVTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLD------F---RL------RSVVLWIDPDPNPKLGIQ 138 (1341)
Q Consensus 74 ~~~~Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWD------v---~t------g~~~~~l~~~~h~~~~V~ 138 (1341)
...+|..|+|+-... ...+..++||.=.... +.|.. + .. ...+..+....-.+.+..
T Consensus 78 ~~~PI~qI~fa~~~~-------~~~~~~~~l~Vrt~~s-t~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 78 DGSPIKQIKFATLSE-------SFDEKSRWLAVRTETS-TTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCeeEEEeccccc-------ccCCcCcEEEEEcCCE-EEEEEcccccccccccCCccccccceeEEechhhcCCCccc
Confidence 456899999982110 0112334666554443 34444 1 10 123344432211233789
Q ss_pred EEEEeecCCCccEEEEEeCCCeEEEEECCCCe----EEEEEeC-CCCce----------EEEEEcCCCCCEEEEEeCCCe
Q 000707 139 DLCWIVSKPDSFVLAAINGPSVLSLYNTTSAS----CMWKYDA-SPEYL----------SCIRRNPFDARHFCVLGLKGL 203 (1341)
Q Consensus 139 ~l~wsp~~~~~~lLas~s~d~~i~lWd~~tg~----~i~~~~~-~~~~v----------~~~~fsP~d~~~la~~~~dG~ 203 (1341)
+++|.|+.. ..+|..+..|...+|++..+. ..+.... ..+.+ ..+.|.+ +..+|.++.. ..
T Consensus 150 Dv~FnP~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~r-~~ 225 (765)
T PF10214_consen 150 DVAFNPWDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCNR-SK 225 (765)
T ss_pred eEEeccCcc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEcC-Cc
Confidence 999999864 689999999999999992111 1222221 11222 1233333 3333333332 23
Q ss_pred EEEEEecCCcccceeeeeEEEecCcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEEcCCeEEEEEcC
Q 000707 204 LLSVRVLGQKEDEVVVKELQIQTDCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVTFPRELVVFDLQ 283 (1341)
Q Consensus 204 i~~~d~~~~~~~~~~~k~~~i~~~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~~d~~I~iwDl~ 283 (1341)
+..+|+.+... ..+ .. .......++.+.-+|+....++..+..+|...|+.
T Consensus 226 l~~~d~~~~~~-----------------~~~--l~----------~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~ 276 (765)
T PF10214_consen 226 LMLIDFESNWQ-----------------TEY--LV----------TAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVK 276 (765)
T ss_pred eEEEECCCCCc-----------------cch--hc----------cCCChhheeeEEecCCccceEEEEecCeEEEEEcc
Confidence 33333322100 000 00 11233468888889988888888888999999998
Q ss_pred CC
Q 000707 284 YE 285 (1341)
Q Consensus 284 t~ 285 (1341)
..
T Consensus 277 ~~ 278 (765)
T PF10214_consen 277 SS 278 (765)
T ss_pred CC
Confidence 74
No 485
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=39.11 E-value=9.4e+02 Score=33.19 Aligned_cols=39 Identities=10% Similarity=-0.024 Sum_probs=29.6
Q ss_pred cChHHHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHH
Q 000707 1108 LEGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYA 1146 (1341)
Q Consensus 1108 ~~~~e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~ 1146 (1341)
.+..+....+++.++..|+.++|++ -.++..|+|..|+-
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~ 116 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLER 116 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 4445665788999999999999888 56788887655554
No 486
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=39.07 E-value=3.1e+02 Score=35.48 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCHHHHHH
Q 000707 1116 NRVHELVSVGNLEAAVS 1132 (1341)
Q Consensus 1116 ~~~~~~~~lG~~~~av~ 1132 (1341)
.++..+..+|+.++|++
T Consensus 404 ~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 404 HRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 34444444555555554
No 487
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=39.04 E-value=64 Score=31.98 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=53.4
Q ss_pred cchhhHHHhcCcHHHHHHHhhccCcHHHHHHHHHhhcCCccHHHHHHHHHHHhhcccccHH--------------HHHHH
Q 000707 1181 LSGTHLLCAVGRYQEACSQLQDAGCWTDAATLAATHLKGSDYARVLQRWADHVHHVEHNIW--------------RALIL 1246 (1341)
Q Consensus 1181 ~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~~~~~~~--------------~A~~~ 1246 (1341)
--....+|+| +.-+|-.--.|++..++++|+.++=++.|++++....-.. .|..+
T Consensus 66 FGSLVWCCKi-----------tKPCplRD~~l~ri~mS~~EYM~lKkqLae~il~~s~~~~e~v~v~a~a~v~~eeAr~a 134 (153)
T COG4008 66 FGSLVWCCKI-----------TKPCPLRDGVLNRINMSPEEYMELKKQLAEYILGHSEPPVEEVEVLADAFVTPEEAREA 134 (153)
T ss_pred cceeeeeecC-----------CCCccccHHHHHhcCCCHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHhcCCHHHHHHH
Confidence 3345678888 4568888899999999999999999999999976542112 45555
Q ss_pred HHHhCCHHHHHHHHHhc
Q 000707 1247 YVAAGGLQEALAALREA 1263 (1341)
Q Consensus 1247 ~~~~g~~~~a~~~l~~~ 1263 (1341)
+.-+|++..|.++|+++
T Consensus 135 leeagDl~~A~k~l~~~ 151 (153)
T COG4008 135 LEEAGDLRTAMKILRMK 151 (153)
T ss_pred HHHcCCHHHHHHHHHHh
Confidence 55677777777777654
No 488
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=38.86 E-value=1.1e+03 Score=31.50 Aligned_cols=154 Identities=15% Similarity=0.168 Sum_probs=88.3
Q ss_pred CeeEEEEe---ecCC-CccEEEEEeCCCeEEEEE------CCC---------CeEEEEEeC---CCCceEEEEEcCCCCC
Q 000707 136 GIQDLCWI---VSKP-DSFVLAAINGPSVLSLYN------TTS---------ASCMWKYDA---SPEYLSCIRRNPFDAR 193 (1341)
Q Consensus 136 ~V~~l~ws---p~~~-~~~lLas~s~d~~i~lWd------~~t---------g~~i~~~~~---~~~~v~~~~fsP~d~~ 193 (1341)
||..|+|. ...+ .+++|++-.. ..+.|.. ... ..++..+.. +..+...|+|+|.+.+
T Consensus 81 PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~~~ 159 (765)
T PF10214_consen 81 PIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWDQR 159 (765)
T ss_pred CeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCccc
Confidence 89999998 3221 1257776654 4444544 111 123444432 1346779999999999
Q ss_pred EEEEEeCCCeEEEEEecCCcccceeeeeEEEec-CcchhhhhhhhhccccCCCCCCCCcCccceEEEEEccCCCceEEEE
Q 000707 194 HFCVLGLKGLLLSVRVLGQKEDEVVVKELQIQT-DCTELLKLERELSAGAASLSPASGLFPLYMVKFTFSPHWRHIIFVT 272 (1341)
Q Consensus 194 ~la~~~~dG~i~~~d~~~~~~~~~~~k~~~i~~-~~~~l~~l~~~~~~~s~~~~p~~~~~~~~v~~~afSpdg~~l~~~~ 272 (1341)
+||+....|..-+||+.+..... ...+.... ..+.+ +. .+. ......++.|.++...+ .+.
T Consensus 160 q~AiVD~~G~Wsvw~i~~~~~~~--~~~~~~~~~~~gsi--~~----------d~~---e~s~w~rI~W~~~~~~l-Lv~ 221 (765)
T PF10214_consen 160 QFAIVDEKGNWSVWDIKGRPKRK--SSNLRLSRNISGSI--IF----------DPE---ELSNWKRILWVSDSNRL-LVC 221 (765)
T ss_pred eEEEEeccCcEEEEEeccccccC--CcceeeccCCCccc--cC----------CCc---ccCcceeeEecCCCCEE-EEE
Confidence 99999999999999983211100 01111100 00111 00 000 01224567888876554 455
Q ss_pred cCCeEEEEEcCCCceeEEEecCCCccceEEEEEcCC
Q 000707 273 FPRELVVFDLQYETPLFSAALPRGCAKFLDVLADPN 308 (1341)
Q Consensus 273 ~d~~I~iwDl~t~~~l~~~~l~~~~~~~~~v~~~pd 308 (1341)
..+.+.++|++++.....+...+....++++..+|+
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 668899999998765432333445577889988876
No 489
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=38.58 E-value=2.2e+02 Score=33.71 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=56.8
Q ss_pred HHHHHHcCCHHHHHHHhhcCCCCCchhHHHHHHHhhhhccccHHHHHHHHH---------HHHHHHHHccCCcchhhHHH
Q 000707 1118 VHELVSVGNLEAAVSLLLSTSPESSYFYANALRAVALSSAVSRSLLELAVK---------VVAANMVRNDRSLSGTHLLC 1188 (1341)
Q Consensus 1118 ~~~~~~lG~~~~av~lLl~~~pe~~~~~~~al~a~~~a~~~s~~~~~~~~k---------~~a~~l~~~~~~~~~v~~~~ 1188 (1341)
+..++..|+...|-++-=+-.=-...||.--++| +|..--=+-+..-.| -....++..|.-.+|..|.-
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~a--La~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKA--LAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHH--HHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHH
Confidence 4556788998888775433332235666444444 443322111111111 12233555666667777766
Q ss_pred hcCcHHHHHHHhhccCcHHHHHHHHHhhc
Q 000707 1189 AVGRYQEACSQLQDAGCWTDAATLAATHL 1217 (1341)
Q Consensus 1189 ~~g~~~~a~~~l~~~~~w~~a~~la~~~l 1217 (1341)
.+.. .+-|+++...|.|++|+..|...=
T Consensus 262 k~~~-~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 262 KIPD-EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred hCCh-HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 7655 777777788889999988888764
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=38.27 E-value=59 Score=23.91 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=21.7
Q ss_pred EEEEEeCCCeEEEEECCCCeEEEEE
Q 000707 151 VLAAINGPSVLSLYNTTSASCMWKY 175 (1341)
Q Consensus 151 lLas~s~d~~i~lWd~~tg~~i~~~ 175 (1341)
++..++.++.+...|..+|+.+|++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5666778999999999999999975
No 491
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=38.23 E-value=2.8e+02 Score=27.85 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHH
Q 000707 1115 QNRVHELVSVGNLEAAVS 1132 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~ 1132 (1341)
-++|..+=.+|+.++||.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~ 22 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIP 22 (120)
T ss_pred HHHHHHHHhcCCHHHHHH
Confidence 456778888999999997
No 492
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=37.80 E-value=4.9e+02 Score=30.82 Aligned_cols=112 Identities=18% Similarity=0.191 Sum_probs=56.6
Q ss_pred ceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEEEeCCCCcE---EEEE----eecCCCeEEEEEcCC----C
Q 000707 503 TVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDVVDVSANAV---TASF----SVHNGTVRGLRWLGN----S 571 (1341)
Q Consensus 503 ~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~lWDl~tg~~---~~~l----~~H~~~V~~l~fs~d----~ 571 (1341)
..++|+|.| ++.+++ +...|.|++++ ..+.. +..+ ........+|++.|+ +
T Consensus 3 ~P~~~a~~p----------------dG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~ 64 (331)
T PF07995_consen 3 NPRSMAFLP----------------DGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNG 64 (331)
T ss_dssp SEEEEEEET----------------TSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-
T ss_pred CceEEEEeC----------------CCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCC
Confidence 357889988 577766 56699999999 45544 2222 112346789999884 4
Q ss_pred cE-EEEecCCcccccCcccCeEEEEEccCC--c----eeeeEEecc--CCCCCeEEEEECCCCCEEEEEECC
Q 000707 572 RL-VSFSYSQVNEKSGGYINRLVVTCLRSG--I----NRAFRVLQK--PERAPIRALRASSSGRYLLILFRD 634 (1341)
Q Consensus 572 ~l-lS~s~d~~~~~sg~~~~~i~lwD~~tG--~----~~~l~~l~~--~~~~~I~~i~~SpdG~~Las~s~D 634 (1341)
.+ ++.+.... ..+..++.|.-|....+ . ...+..+.. .....-..|.|.|||.+.++.+..
T Consensus 65 ~lYv~~t~~~~--~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 65 YLYVYYTNADE--DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEE-T--SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred EEEEEEEcccC--CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 43 33332100 11223334444444333 1 112222222 122345779999999666555443
No 493
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=37.58 E-value=72 Score=24.59 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=14.3
Q ss_pred eEEEEEccCCCceEEEEcC
Q 000707 256 MVKFTFSPHWRHIIFVTFP 274 (1341)
Q Consensus 256 v~~~afSpdg~~l~~~~~d 274 (1341)
-...+|||||+.+++++..
T Consensus 11 ~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 11 DGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp EEEEEE-TTSSEEEEEEEC
T ss_pred ccCEEEecCCCEEEEEecC
Confidence 3455999999999999854
No 494
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=36.69 E-value=37 Score=38.94 Aligned_cols=142 Identities=18% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhc---C--CCCCchhHHH-HHHHhhhhccccHHHHHHHHHHHHHHHHHcc-----C
Q 000707 1111 EQAIQNRVHELVSVGNLEAAVSLLLS---T--SPESSYFYAN-ALRAVALSSAVSRSLLELAVKVVAANMVRND-----R 1179 (1341)
Q Consensus 1111 ~e~~~~~~~~~~~lG~~~~av~lLl~---~--~pe~~~~~~~-al~a~~~a~~~s~~~~~~~~k~~a~~l~~~~-----~ 1179 (1341)
++. .++|..++..|++++|.+.|.+ . +|+++.|+.. +. +| .+.+-+..+++.+-. |+..+ .
T Consensus 9 ~~~-l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~----La--~~~~~~~~A~~ay~~-l~~~~~~~~~~ 80 (280)
T PF13429_consen 9 EEA-LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLAD----LA--WSLGDYDEAIEAYEK-LLASDKANPQD 80 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccccccc----cc--ccccccccccccccc-ccccccccccc
Confidence 344 4779999999999999997742 3 3666666532 11 11 122223333333332 22211 2
Q ss_pred CcchhhHHHhcCcHHHHHHHhhcc-------CcHHHHHHHHHhhcCCccHHHHHHHHHHHhhc--ccccH-HHHHHHHHH
Q 000707 1180 SLSGTHLLCAVGRYQEACSQLQDA-------GCWTDAATLAATHLKGSDYARVLQRWADHVHH--VEHNI-WRALILYVA 1249 (1341)
Q Consensus 1180 ~~~~v~~~~~~g~~~~a~~~l~~~-------~~w~~a~~la~~~l~~~~~~~~~~r~a~~l~~--~~~~~-~~A~~~~~~ 1249 (1341)
...-+.+ ..-+++++|.+++... ..|..++.++...-.-++..+++++... +.. .+... .....+|..
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEE-LPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHH
T ss_pred ccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHh-ccCCCCCHHHHHHHHHHHHH
Confidence 2222233 5667777777766532 4455555555444333444455555442 221 11112 345557778
Q ss_pred hCCHHHHHHHHHh
Q 000707 1250 AGGLQEALAALRE 1262 (1341)
Q Consensus 1250 ~g~~~~a~~~l~~ 1262 (1341)
.|+..+|++.+.+
T Consensus 159 ~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 159 LGDPDKALRDYRK 171 (280)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 8888888888876
No 495
>PRK13684 Ycf48-like protein; Provisional
Probab=36.61 E-value=7.9e+02 Score=29.14 Aligned_cols=105 Identities=9% Similarity=0.014 Sum_probs=53.6
Q ss_pred cceEEEEecCCCcccccccCCCCCCCCCCEEEEEeCCCcEEE-EeCCCCcEEEEE-eecCCCeEEEEEcCCCcEEEEecC
Q 000707 502 STVTMLAVPSPSLTATLARGGNYPAVAVPLVALGTQSGAVDV-VDVSANAVTASF-SVHNGTVRGLRWLGNSRLVSFSYS 579 (1341)
Q Consensus 502 ~~vt~la~~p~~~~~~~~~~~~~~~~~~~llAsGs~DGtI~l-WDl~tg~~~~~l-~~H~~~V~~l~fs~d~~llS~s~d 579 (1341)
..+..+.+.| ++.++++| ..|.+.. +|- .++.-... ..-...++++.+.++++++.++..
T Consensus 173 g~~~~i~~~~----------------~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~ 234 (334)
T PRK13684 173 GVVRNLRRSP----------------DGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG 234 (334)
T ss_pred ceEEEEEECC----------------CCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecC
Confidence 4567777776 35555554 4565432 222 22211112 122357889999998887765543
Q ss_pred CcccccCcccCeEEEEEccCCceeeeEEeccC---CCCCeEEEEECCCCCEEEEEECCCcE
Q 000707 580 QVNEKSGGYINRLVVTCLRSGINRAFRVLQKP---ERAPIRALRASSSGRYLLILFRDAPV 637 (1341)
Q Consensus 580 ~~~~~sg~~~~~i~lwD~~tG~~~~l~~l~~~---~~~~I~~i~~SpdG~~Las~s~D~~I 637 (1341)
. .+++-....|. .......+ ....+.++.+.++++.++++ .++.+
T Consensus 235 G----------~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v 282 (334)
T PRK13684 235 G----------QIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTL 282 (334)
T ss_pred C----------EEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEEc-CCCeE
Confidence 2 33321223343 11111111 12347888999988866654 44543
No 496
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=35.95 E-value=3.5e+02 Score=29.48 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=33.0
Q ss_pred hccChHHHHHHHHHHHHHcCCHHHHHH---HhhcCCCCCchhHHH
Q 000707 1106 EKLEGEQAIQNRVHELVSVGNLEAAVS---LLLSTSPESSYFYAN 1147 (1341)
Q Consensus 1106 e~~~~~e~~~~~~~~~~~lG~~~~av~---lLl~~~pe~~~~~~~ 1147 (1341)
...+..+.-..++..++.+|+.+.|++ -.+...|++...+.+
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~ 112 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAA 112 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 334555565788999999999999988 788999998877644
No 497
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.66 E-value=2e+02 Score=32.44 Aligned_cols=90 Identities=21% Similarity=0.116 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHccCCcchhhHHHhcCcHHHHHHHhhccCcHHHHH-HHHHhh-----cCCccHHHHHHHHHHHhhcccc
Q 000707 1165 LAVKVVAANMVRNDRSLSGTHLLCAVGRYQEACSQLQDAGCWTDAA-TLAATH-----LKGSDYARVLQRWADHVHHVEH 1238 (1341)
Q Consensus 1165 ~~~k~~a~~l~~~~~~~~~v~~~~~~g~~~~a~~~l~~~~~w~~a~-~la~~~-----l~~~~~~~~~~r~a~~l~~~~~ 1238 (1341)
.+..-.|.++....++-|+|+++ .+||...+..|.-.-|+ .|=|+. .++++.-.+++|=++-+.+++.
T Consensus 72 KayEqaamLake~~klsEvvdl~------eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr 145 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLY------EKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR 145 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH------HHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch
Confidence 33444455444466767777764 55677777777765443 222222 5556666788888888877764
Q ss_pred cHHHHHHHHHH-------hCCHHHHHHHHH
Q 000707 1239 NIWRALILYVA-------AGGLQEALAALR 1261 (1341)
Q Consensus 1239 ~~~~A~~~~~~-------~g~~~~a~~~l~ 1261 (1341)
..+|..+|.+ ...|.+|+..+-
T Consensus 146 -~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 146 -DQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred -HHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 3466666544 444555544443
No 498
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=35.50 E-value=6.8e+02 Score=31.17 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=34.3
Q ss_pred EEEEEEccCCCccccCCCCCCCCCcEEEEEeCCCcEEEEeCCCCeEEEEecCC-----CCCCCCeeEEEEeecC
Q 000707 78 VTAVKWIPITLRCDLLSTEPGSSHLLLAAADRHGRVALLDFRLRSVVLWIDPD-----PNPKLGIQDLCWIVSK 146 (1341)
Q Consensus 78 Vt~v~~sp~~~~~~~~s~~~~p~g~~LASg~~dG~I~vWDv~tg~~~~~l~~~-----~h~~~~V~~l~wsp~~ 146 (1341)
-+.++|.|| |++|++--..|+|++++-.++.......++ ...+ +..+|+++|+.
T Consensus 32 Pw~maflPD--------------G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~-GLlglal~PdF 90 (454)
T TIGR03606 32 PWALLWGPD--------------NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHN-GLLGLALHPDF 90 (454)
T ss_pred ceEEEEcCC--------------CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCC-ceeeEEECCCc
Confidence 347888876 566666544699999987655432221111 1234 78999999985
No 499
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=35.47 E-value=5.1e+02 Score=33.44 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCHHHHHHH---hhcCCCCCchh
Q 000707 1115 QNRVHELVSVGNLEAAVSL---LLSTSPESSYF 1144 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~l---Ll~~~pe~~~~ 1144 (1341)
..++..+..+|+.++|+++ +|+.+|+++..
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3445556666666666662 45666665543
No 500
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=34.98 E-value=51 Score=26.33 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCHHHHHH---HhhcCCCCCch
Q 000707 1115 QNRVHELVSVGNLEAAVS---LLLSTSPESSY 1143 (1341)
Q Consensus 1115 ~~~~~~~~~lG~~~~av~---lLl~~~pe~~~ 1143 (1341)
..+++.+..+|+.++|++ -+|+..|+|+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 568999999999999998 57899999753
Done!