Query 000708
Match_columns 1340
No_of_seqs 387 out of 657
Neff 4.9
Searched_HMMs 46136
Date Mon Apr 1 22:18:59 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 1E-142 2E-147 1260.1 54.0 859 67-1328 117-1042(1163)
2 smart00761 HDAC_interact Histo 100.0 1.5E-43 3.2E-48 338.9 7.0 100 494-593 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 1.1E-41 2.3E-46 327.9 7.8 100 494-593 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 2.4E-39 5.1E-44 353.2 17.9 159 74-232 15-197 (231)
5 KOG4204 Histone deacetylase co 99.8 1.8E-19 3.9E-24 197.7 17.1 178 157-430 14-193 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 8.8E-19 1.9E-23 210.9 17.6 211 157-430 123-335 (1163)
7 PF02671 PAH: Paired amphipath 99.4 8.3E-13 1.8E-17 111.4 5.5 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.2E-11 2.6E-16 104.4 5.9 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 94.2 0.053 1.1E-06 62.9 4.9 8 485-492 265-272 (293)
10 KOG3915 Transcription regulato 93.1 0.068 1.5E-06 63.8 3.3 12 179-190 200-211 (641)
11 KOG3973 Uncharacterized conser 92.2 0.16 3.4E-06 59.2 4.5 7 17-23 309-315 (465)
12 KOG3973 Uncharacterized conser 91.5 0.24 5.2E-06 57.7 5.0 6 19-24 300-305 (465)
13 PLN03138 Protein TOC75; Provis 90.1 0.31 6.6E-06 63.1 4.7 29 382-412 282-310 (796)
14 PLN03138 Protein TOC75; Provis 88.3 0.45 9.8E-06 61.7 4.4 16 196-211 180-195 (796)
15 PHA00370 III attachment protei 85.8 1.6 3.5E-05 49.4 6.4 13 81-93 148-160 (297)
16 KOG3915 Transcription regulato 85.6 0.62 1.3E-05 56.1 3.2 8 220-227 260-267 (641)
17 PHA00370 III attachment protei 84.8 2.1 4.6E-05 48.5 6.6 16 161-176 257-272 (297)
18 COG4371 Predicted membrane pro 82.1 1.7 3.6E-05 49.2 4.5 8 202-209 181-188 (334)
19 PF02084 Bindin: Bindin; Inte 79.1 21 0.00046 40.2 11.6 8 128-135 138-145 (238)
20 KOG3074 Transcriptional regula 75.2 0.86 1.9E-05 51.0 -0.2 14 73-86 27-40 (263)
21 COG4371 Predicted membrane pro 72.8 4.1 8.9E-05 46.2 4.2 14 119-132 182-195 (334)
22 cd07354 HN_L-delphilin-R1_like 72.3 13 0.00028 35.8 6.7 68 163-231 3-72 (80)
23 PF04285 DUF444: Protein of un 72.2 6.2 0.00013 48.4 5.9 40 159-212 160-199 (421)
24 KOG1308 Hsp70-interacting prot 68.3 13 0.00028 44.5 7.1 35 95-130 336-376 (377)
25 PF13865 FoP_duplication: C-te 67.6 14 0.00031 34.9 6.0 27 73-99 37-67 (74)
26 cd07354 HN_L-delphilin-R1_like 66.5 21 0.00046 34.4 6.8 68 79-147 3-72 (80)
27 KOG1596 Fibrillarin and relate 66.0 11 0.00024 43.2 5.7 14 484-497 288-301 (317)
28 PTZ00110 helicase; Provisional 57.7 23 0.0005 44.9 7.2 11 728-738 485-495 (545)
29 COG4174 ABC-type uncharacteriz 56.6 22 0.00048 41.2 6.0 29 83-111 83-111 (364)
30 PTZ00009 heat shock 70 kDa pro 54.4 11 0.00023 48.8 3.7 8 57-64 630-637 (653)
31 PF05642 Sporozoite_P67: Sporo 53.6 19 0.00042 45.2 5.3 11 403-413 371-381 (727)
32 PF11867 DUF3387: Domain of un 52.6 45 0.00098 39.7 8.2 99 114-212 117-229 (335)
33 PF07466 DUF1517: Protein of u 51.4 23 0.0005 41.6 5.4 19 199-217 138-156 (289)
34 PF05642 Sporozoite_P67: Sporo 47.4 28 0.00061 43.8 5.4 7 374-380 363-369 (727)
35 KOG3074 Transcriptional regula 46.2 13 0.00028 42.1 2.2 10 184-193 71-80 (263)
36 PF07655 Secretin_N_2: Secreti 45.4 28 0.0006 34.5 4.1 29 65-93 52-80 (98)
37 PF05387 Chorion_3: Chorion fa 44.9 23 0.00051 40.2 3.9 17 78-94 70-86 (277)
38 KOG1924 RhoA GTPase effector D 44.7 42 0.00091 43.8 6.4 19 679-697 968-986 (1102)
39 PRK05325 hypothetical protein; 42.6 24 0.00053 43.2 3.9 19 159-177 144-162 (401)
40 PRK04537 ATP-dependent RNA hel 42.1 43 0.00094 42.8 6.2 10 371-380 556-565 (572)
41 PRK10930 FtsH protease regulat 42.0 25 0.00054 43.4 3.9 16 382-397 302-317 (419)
42 KOG1924 RhoA GTPase effector D 41.0 59 0.0013 42.6 6.9 16 372-390 807-822 (1102)
43 PF04285 DUF444: Protein of un 38.1 54 0.0012 40.6 5.9 6 13-18 51-56 (421)
44 PF12174 RST: RCD1-SRO-TAF4 (R 37.6 78 0.0017 29.9 5.5 45 371-415 13-57 (70)
45 KOG3570 MAPK-activating protei 35.2 34 0.00074 44.8 3.6 37 640-676 903-940 (1588)
46 KOG3875 Peroxisomal biogenesis 34.2 66 0.0014 38.2 5.4 12 203-214 180-191 (362)
47 PF04094 DUF390: Protein of un 33.6 64 0.0014 41.9 5.6 8 130-137 197-204 (828)
48 TIGR02877 spore_yhbH sporulati 33.0 43 0.00094 40.6 3.9 31 387-427 317-347 (371)
49 PF09060 L27_N: L27_N; InterP 30.5 57 0.0012 28.8 3.1 26 1224-1250 2-27 (49)
50 KOG3304 Surfeit family protein 29.1 87 0.0019 32.9 4.7 32 80-111 16-48 (148)
51 KOG4462 WASP-interacting prote 28.8 65 0.0014 38.7 4.3 13 7-19 37-49 (437)
52 KOG0037 Ca2+-binding protein, 28.4 62 0.0013 36.7 3.9 27 95-122 56-82 (221)
53 KOG3262 H/ACA small nucleolar 27.7 81 0.0018 34.9 4.5 17 214-230 128-144 (215)
54 COG5324 Uncharacterized conser 27.6 74 0.0016 39.8 4.6 126 558-690 523-680 (758)
55 PF12083 DUF3560: Domain of un 27.0 3.5E+02 0.0077 28.4 8.8 65 591-655 41-118 (126)
56 PF04094 DUF390: Protein of un 26.8 69 0.0015 41.6 4.3 6 142-147 165-170 (828)
57 PF08963 DUF1878: Protein of u 26.7 76 0.0016 32.6 3.8 64 365-428 42-110 (113)
58 KOG1456 Heterogeneous nuclear 26.5 58 0.0013 39.4 3.4 20 131-150 46-65 (494)
59 cd07347 harmonin_N_like N-term 26.2 1.9E+02 0.0041 28.1 6.1 60 370-430 6-67 (78)
60 PF04228 Zn_peptidase: Putativ 25.5 79 0.0017 37.4 4.3 14 166-179 152-165 (292)
61 PF08349 DUF1722: Protein of u 25.4 1.4E+02 0.003 30.4 5.5 49 370-418 56-104 (117)
62 KOG0775 Transcription factor S 25.2 2.7E+02 0.0058 32.8 8.1 20 85-104 66-87 (304)
63 PRK05325 hypothetical protein; 24.5 79 0.0017 38.9 4.1 8 388-395 339-346 (401)
64 KOG1456 Heterogeneous nuclear 24.2 63 0.0014 39.1 3.1 27 400-428 359-385 (494)
65 KOG0339 ATP-dependent RNA heli 23.8 97 0.0021 39.1 4.7 10 84-93 659-668 (731)
66 PF03564 DUF1759: Protein of u 21.5 5.1E+02 0.011 26.6 8.9 82 92-194 1-85 (145)
67 TIGR02877 spore_yhbH sporulati 21.4 94 0.002 37.9 3.9 16 161-176 158-173 (371)
68 PRK09807 hypothetical protein; 20.9 89 0.0019 31.9 3.0 51 88-138 2-64 (161)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=9.8e-143 Score=1260.11 Aligned_cols=859 Identities=30% Similarity=0.442 Sum_probs=624.3
Q ss_pred CCCCCCCCccccchhhhhHHHHHHHhcCChHHHHHHHHHHHHHHhccCChHHHHHHHHHHhccChhHHhhhhhcCCcccc
Q 000708 67 TAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYE 146 (1340)
Q Consensus 67 ~~g~~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rVs~LFkGhpdLI~GFN~FLP~gy~ 146 (1340)
.++....++|+|+||++||++||.+|..+|++|+.||+||||||+|.|||+|||+||+.||+|+|+||+|||+|||+||+
T Consensus 117 ~p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYk 196 (1163)
T COG5602 117 PPPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYK 196 (1163)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC--------------------------------------------CC-------------CCCccchHHHHHHH
Q 000708 147 ITLDEDE--------------------------------------------AP-------------PKKTVEFEEAITFV 169 (1340)
Q Consensus 147 I~l~~de--------------------------------------------~p-------------p~~~vef~~Ai~Fv 169 (1340)
|+++.+. || ++..+.|++||.||
T Consensus 197 ie~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~v 276 (1163)
T COG5602 197 IEGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFV 276 (1163)
T ss_pred EEEecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHH
Confidence 9875210 00 02346799999999
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCCCccccCCcccCCC
Q 000708 170 NKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNE 249 (1340)
Q Consensus 170 nKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~LFk~hPDLL~EF~~FLP~~~~~~~~~~~~~~~~~~~~~~~ 249 (1340)
|+||.||+++|+.|..||++|++|++.+++|++||.+|+.||+++|||+++|..|||+....+....+.. ..+
T Consensus 277 nkVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~a-q~p------ 349 (1163)
T COG5602 277 NKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANA-QKP------ 349 (1163)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCcccccccccccccc-CCC------
Confidence 9999999999999999999999999999999999999999999999999999999999865432111100 001
Q ss_pred CCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcccCCCCccccccccccccc
Q 000708 250 RSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDF 329 (1340)
Q Consensus 250 r~s~~P~~~q~~~~K~~~~~r~~~s~~~~d~s~~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~~~~~~~~~~~~~~ 329 (1340)
+..+|+...+...+.- +.++.+++.. ..|.. . .+..+ .+. +...++
T Consensus 350 -~~~lPPiG~Fs~p~~a-~~~~~ps~~~-----~~p~~-----~-----------~~~~~---~r~--------d~~~S~ 395 (1163)
T COG5602 350 -SKRLPPIGSFSLPTAA-PEQNRPSLLW-----ESPRS-----I-----------SNISR---YRA--------DLLTSF 395 (1163)
T ss_pred -cccCCCCCCCCCCCcc-cccCChHHhh-----cCcch-----h-----------ccccc---ccc--------chhhhh
Confidence 1223333222111100 0000001000 00000 0 00000 000 000001
Q ss_pred ccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC-hHHHHHHHHHHhhhhcCCCCHHHHHHH
Q 000708 330 NLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNL 408 (1340)
Q Consensus 330 ~~q~~~~k~k~~~~~~~~g~~P~~s~~~~~~a~k~~~~eElaFFDKVKk~L~-~~~Y~eFLKcLnLYsQeIIsr~ELv~l 408 (1340)
..+-.|.+. . .|... ..++.-.||++||.+|. ...|++||||||||+|+||++++||++
T Consensus 396 s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lver 455 (1163)
T COG5602 396 SRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVER 455 (1163)
T ss_pred hhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 111111110 0 11110 00122279999999999 999999999999999999999999999
Q ss_pred HHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCCCcccccccchhhhhhhhhHhHhhhhhhhhhhhcccc
Q 000708 409 VTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQ 488 (1340)
Q Consensus 409 V~~fLG~~pDLm~~Fk~FLg~~e~~~~~~~g~~s~~~l~~~g~~~~~~~~~~~dr~~~~~~~~~ker~~~~ek~~~kp~~ 488 (1340)
+-.|||.+.+||.|||+|++|.+... .| + +..
T Consensus 456 ~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~----------------~-------------~~~ 487 (1163)
T COG5602 456 LFAFLGSNEELIRWFKAFINYSEPEK-------------------EP----------------L-------------RET 487 (1163)
T ss_pred HHHHhcCcHHHHHHHHHHhccCCCCC-------------------CC----------------c-------------ccc
Confidence 99999999999999999999975210 00 0 012
Q ss_pred ccccCCCcccCCccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHhhhcccchhhHHHHH
Q 000708 489 ELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLL 567 (1340)
Q Consensus 489 elDls~c~r~gpSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfElDm~I 567 (1340)
..||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+|
T Consensus 488 ~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~I 567 (1163)
T COG5602 488 RKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRHI 567 (1163)
T ss_pred ccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCcccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHHH
Q 000708 568 ESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQK 642 (1340)
Q Consensus 568 E~~~~tI~~Le~l~~ki~~~~~e~~~~~~l~~~L----~~i~~R~I~rIYG-d~g~evie~L~knP~~AlPVVL~RLKQK 642 (1340)
|++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+|
T Consensus 568 ea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~K 647 (1163)
T COG5602 568 EATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKMK 647 (1163)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHHh
Confidence 9999999999999999999998888888888766 5899999999999 7999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhcccCccccccccccccchhHHHHHHHHHHHhhhcchhhHHHHhhCCCCCCCCCc
Q 000708 643 QEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHL 722 (1340)
Q Consensus 643 ~eEWr~aq~e~nKvWrev~eKNy~KSLDHq~~~FKq~DkK~ls~K~Lv~EIe~i~eeq~~edd~~~~~~~g~~~~~~P~l 722 (1340)
++|||+|+|+|||+||+|.+|||+|||||||++||+.|||.|++|.||.||+.++.++..- ++ +....-++
T Consensus 648 d~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~---~~------~~k~~fqf 718 (1163)
T COG5602 648 DEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV---SI------DDKKVFQF 718 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee---ec------Ccccccee
Confidence 9999999999999999999999999999999999999999999999999999776643211 00 11234588
Q ss_pred eeecCChhHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHHhhhcccCCCCCCCCCcchhhhhccccCCCCCCCCCcccc
Q 000708 723 EYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVES 801 (1340)
Q Consensus 723 ~f~y~D~~I~~D~~~Li~~~~~~~~-~s~e~~~ki~~~~~~Fv~~ff~i~~r~~~~~~~ed~~~~~~~~~~~~~~~~~~~ 801 (1340)
.|.|+|.-|+.|++.|.......+. -+..+++++..++.+||..||++-.-- .+..+-... .+.+ +.
T Consensus 719 ~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~-~nv~------~~ 786 (1163)
T COG5602 719 VFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERL-LNVK------GL 786 (1163)
T ss_pred eeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhh-cccc------cc
Confidence 9999999999999998654332222 235789999999999999999844210 001110100 0000 00
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCCCcccccccccccccCCCccccccccccccccccccchhhhhhhhhhcccccccccc
Q 000708 802 DGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRS 881 (1340)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1340)
+. +. +. .+|..++
T Consensus 787 ni-------------------~g-----------------~k--------~~r~srs----------------------- 799 (1163)
T COG5602 787 NI-------------------DG-----------------LK--------ADRSSRS----------------------- 799 (1163)
T ss_pred cc-------------------CC-----------------cc--------ccccccc-----------------------
Confidence 00 00 00 0000000
Q ss_pred chhhhhhccccccCCCCCCccccccCCCCCCcccccCCCCCCcccccccccccCCCCCCCCcccccCCCCcccccccccc
Q 000708 882 GIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGAL 961 (1340)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 961 (1340)
...+|- +..++ + + +++-
T Consensus 800 ~~~~q~---~s~vk---------------------s------------------g--n~~q------------------- 816 (1163)
T COG5602 800 DESAQR---YSKVK---------------------S------------------G--NLEQ------------------- 816 (1163)
T ss_pred chhhhh---HHHhh---------------------c------------------c--cchh-------------------
Confidence 000000 00000 0 0 0000
Q ss_pred ccCcccccccccCCCCCcccccccccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCCC
Q 000708 962 RDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDAD 1041 (1340)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~e~eegelsp~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1340)
+|-+.|. .++
T Consensus 817 -------------------------vs~q~de----------~ai----------------------------------- 826 (1163)
T COG5602 817 -------------------------VSKQIDE----------YAI----------------------------------- 826 (1163)
T ss_pred -------------------------cccCCch----------hHH-----------------------------------
Confidence 0000000 000
Q ss_pred CCcccCCCcCccCCCCCCCCCCCCccchhhhhhhhcccccccCCcccccCcccCccccccCCCCCCCCCcccccccccCc
Q 000708 1042 ADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKP 1121 (1340)
Q Consensus 1042 ~d~e~~~~~s~~~~~~s~ses~~~e~~~~~~~~~~~~~~~~~d~k~ese~~aeg~~~~~~~~~~~~~~~~se~~~~~~kp 1121 (1340)
+|| .. +.+ .| .|..+.+.-.|.+. -|
T Consensus 827 -ede-------~k---~p~-----hp--------------------------d~l~eh~~skgi~e----ne-------- 852 (1163)
T COG5602 827 -EDE-------IK---EPT-----HP--------------------------DGLKEHNISKGISE----NE-------- 852 (1163)
T ss_pred -HHH-------hc---CCC-----CC--------------------------chHHHhhhhhccch----hh--------
Confidence 000 00 000 00 00000000001100 00
Q ss_pred ccccCCCccccccccccceeecCchhhHHHHHHHHHHHHHHHHHhchhHhhhcccCccCCChHHHHHHHHHHHhhccCCC
Q 000708 1122 LAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSI 1201 (1340)
Q Consensus 1122 la~~~~~~~~~~~~~~~~FygN~~~YvffRLhqiLyERL~~aK~~s~~~e~r~k~~~d~~~~~~Y~~fL~~l~~LldG~~ 1201 (1340)
++ ... ..||||.+.||||||...+||||..+|.--.+..+- .....-|...|.++++|+.|.+
T Consensus 853 --k~--------~i~-~~~fgns~myvffrl~~~~yerLyeik~~~e~vti~------~~~~g~Yen~l~~s~rli~g~l 915 (1163)
T COG5602 853 --KQ--------VIA-LTEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTIG------MMEPGHYENELWDSYRLIFGAL 915 (1163)
T ss_pred --HH--------HHH-HhhcccceeeeehhhhHhHHHHHHHHHHHHHHhhhh------hcccchhhhHHHHHHHHHhccc
Confidence 11 111 348999999999999999999999998533222211 1123489999999999999999
Q ss_pred CchhhHHHHHhhhcCcceEEeeHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHhhcCCC-CcchHHHHHHHHHhc-CCCC
Q 000708 1202 DNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPG-KQIDSVYYENARVLL-HEEN 1279 (1340)
Q Consensus 1202 D~~~fED~~R~~fG~~aY~lFTiDKLi~~lvKqlq~iv~De~~~~ll~Ly~~E~~R~~~-~~~d~~Y~~~Ae~ll-~dEn 1279 (1340)
++.+||+.+|..+++++|+++|||||.|.|+||||+++.|-+...++.||.....-++. ...+++||..+|.+| +||+
T Consensus 916 ~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e~ 995 (1163)
T COG5602 916 TPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDEI 995 (1163)
T ss_pred cHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchhh
Confidence 99999999999999999999999999999999999999999999999999554433332 246889999999999 8999
Q ss_pred eEEEEEccCCCeeEEEEecCCcCCcchhhcccChHHHHHhhhhcccccC
Q 000708 1280 IYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFL 1328 (1340)
Q Consensus 1280 ~yrie~~~~~~~ltIqLld~~~~~~e~~~~~~~~~~~~Yl~~~fl~~~~ 1328 (1340)
||||.|.+.-.++.||+|-...=-.+.+.+ -+..|-.||+ +|.-.-+
T Consensus 996 ~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~-~~~~wkyYV~-sYai~h~ 1042 (1163)
T COG5602 996 LFRFCWINKFKSFGIQIMKRADLTVDQSLD-TQRVWKYYVQ-SYAIQHL 1042 (1163)
T ss_pred eeeeeecchhheeeeeEeeccccccccccC-hHHHHHHHHH-hhccccc
Confidence 999999999999999999554222222211 1258999999 7764433
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=1.5e-43 Score=338.87 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.6
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHhhhcccchhhHHHHHHHHHH
Q 000708 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 572 (1340)
Q Consensus 494 ~c~r~gpSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~t~~-SED~~F~~~rKNqyEE~LfrcEDERfElDm~IE~~~~ 572 (1340)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000708 573 TAKRAEELLNSINENKITLET 593 (1340)
Q Consensus 573 tI~~Le~l~~ki~~~~~e~~~ 593 (1340)
||++|++|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887654
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=1.1e-41 Score=327.91 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.3
Q ss_pred CCcccCCccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHhhhcccchhhHHHHHHHHHHH
Q 000708 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 573 (1340)
Q Consensus 494 ~c~r~gpSYRlLPk~~~~~~CSgR~eLc~sVLND~WVS~t~~SED~~F~~~rKNqyEE~LfrcEDERfElDm~IE~~~~t 573 (1340)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000708 574 AKRAEELLNSINENKITLET 593 (1340)
Q Consensus 574 I~~Le~l~~ki~~~~~e~~~ 593 (1340)
|+.|++|+++|..|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999887764
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-39 Score=353.24 Aligned_cols=159 Identities=63% Similarity=1.042 Sum_probs=148.1
Q ss_pred CccccchhhhhHHHHHHHhcCChHHHHHHHHHHHHHHhccCChHHHHHHHHHHhccChhHHhhhhhcCCccccccCCCCC
Q 000708 74 QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDE 153 (1340)
Q Consensus 74 ~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rVs~LFkGhpdLI~GFN~FLP~gy~I~l~~de 153 (1340)
+.++++||++||++||.+|+++|++|++||+||+|||+++||+++||+||++||+|||+||+|||+|||+||+|+++.+.
T Consensus 15 ~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~~ 94 (231)
T KOG4204|consen 15 PALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSEA 94 (231)
T ss_pred CCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred -------------CCCCCc-----------cchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHH
Q 000708 154 -------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVAS 209 (1340)
Q Consensus 154 -------------~pp~~~-----------vef~~Ai~FvnKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~ 209 (1340)
..++.. +++.+|++|+||||+||++++++|++||+||+||+++++++.+||++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~~ 174 (231)
T KOG4204|consen 95 KDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVEA 174 (231)
T ss_pred ccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 122333 88999999999999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHhhhCCCCCCCC
Q 000708 210 LFEDHADLLEEFTRFLPDTSATS 232 (1340)
Q Consensus 210 LFk~hPDLL~EF~~FLP~~~~~~ 232 (1340)
||++|+||+.+|.+|||......
T Consensus 175 L~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 175 LLQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HHccCHHHHHHHHhhccCCcccc
Confidence 99999999999999999985544
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.82 E-value=1.8e-19 Score=197.69 Aligned_cols=178 Identities=25% Similarity=0.443 Sum_probs=137.0
Q ss_pred CCccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000708 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1340)
Q Consensus 157 ~~~vef~~Ai~FvnKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~LFk~hPDLL~EF~~FLP~~~~~~~~~~ 236 (1340)
.+.+++++|++||++||.+|+++|++|.+||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||..........
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999877654211
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 000708 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1340)
Q Consensus 237 ~~~~~~~~~~~~~r~s~~P~~~q~~~~K~~~~~r~~~s~~~~d~s~~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1340)
.... ..++... ...|...
T Consensus 94 ~~~~-----------~~~~~~~-----------------------~~~~~~~---------------------------- 111 (231)
T KOG4204|consen 94 AKDE-----------FTIYGAT-----------------------SYLPSPK---------------------------- 111 (231)
T ss_pred cccc-----------ccccccc-----------------------ccCCCcc----------------------------
Confidence 1000 0000000 0000000
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHhh
Q 000708 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1340)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~k~~~~~~~~g~~P~~s~~~~~~a~k~~~~eElaFFDKVKk~L~--~~~Y~eFLKcLnL 394 (1340)
..++ ... ...++ + ..+.+++.|.+|||+++. .++|+.||.+|++
T Consensus 112 ---------------~~~~--~~~---~~~~~---------~-----~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~ 157 (231)
T KOG4204|consen 112 ---------------VAFH--EEI---LKLLE---------D-----VEFDRAISFVNKLKTRFQGDDHVYKSFLEILRM 157 (231)
T ss_pred ---------------cccc--chh---hhhcc---------c-----chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0000 000 00000 0 145678999999999998 7799999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000708 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1340)
Q Consensus 395 YsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FLg~~ 430 (1340)
|.++-.+..|+...|..+++.|+||+.+|..||...
T Consensus 158 y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~ 193 (231)
T KOG4204|consen 158 YQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTD 193 (231)
T ss_pred HhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999654
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.79 E-value=8.8e-19 Score=210.87 Aligned_cols=211 Identities=24% Similarity=0.406 Sum_probs=143.7
Q ss_pred CCccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000708 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1340)
Q Consensus 157 ~~~vef~~Ai~FvnKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~LFk~hPDLL~EF~~FLP~~~~~~~~~~ 236 (1340)
-+++.+.+|++||++||.+|..+|++|..||+||++|+.+.+++.+|+++|+.||+|.|+||++|+.|||.......+..
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999987654221
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhcccCCCC
Q 000708 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1340)
Q Consensus 237 ~~~~~~~~~~~~~r~s~~P~~~q~~~~K~~~~~r~~~s~~~~d~s~~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1340)
.+ . . .+...+.+.-|.+.+. +.. ..+.+...++....+|.++.
T Consensus 203 ~~--~-~-s~l~vtTP~gp~s~~p-v~s-----s~y~a~~n~~qrts~p~lps--------------------------- 245 (1163)
T COG5602 203 QP--N-G-SRLHVTTPQGPLSSPP-VQS-----SYYVAPCNHDQRTSHPTLPS--------------------------- 245 (1163)
T ss_pred CC--C-C-CeeeecCCCCCCCCCC-ccc-----ccccccccccccccCCCCcc---------------------------
Confidence 10 0 0 1111111111111100 000 00000000011111111100
Q ss_pred cccccccccccccccccCCCCccccccccCCCCCCCCCccCchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHhh
Q 000708 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1340)
Q Consensus 317 ~~~~~~~~~~~~~~~q~~~~k~k~~~~~~~~g~~P~~s~~~~~~a~k~~~~eElaFFDKVKk~L~--~~~Y~eFLKcLnL 394 (1340)
+ .|+-+. .....|. +...-....+++.++|..|||.++. ++.|.+||.+|.-
T Consensus 246 -----------~--~Q~e~s---------~~~~~~s----d~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrt 299 (1163)
T COG5602 246 -----------D--SQPEPS---------APSHMPS----DARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRT 299 (1163)
T ss_pred -----------c--cCCCCC---------CcccCCc----ccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 0 000000 0000111 0000111247899999999999998 9999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000708 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1340)
Q Consensus 395 YsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FLg~~ 430 (1340)
|..+.-+..|++..|+.++..+|||+++||.||...
T Consensus 300 yq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 300 YQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccc
Confidence 999999999999999999999999999999999754
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.35 E-value=8.3e-13 Score=111.43 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhccCChHHHHHHHHHHhccChhHHhhhhhcCC
Q 000708 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1340)
Q Consensus 96 p~vY~eFLeIMkdfk~~~idt~gVi~rVs~LFkGhpdLI~GFN~FLP 142 (1340)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+||.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 89999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.23 E-value=1.2e-11 Score=104.42 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhhhccCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000708 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1340)
Q Consensus 180 PevYk~FLeIL~~y~~~~~si~eV~~qVa~LFk~hPDLL~EF~~FLP 226 (1340)
|++|++||+||++|+++.++..+|+++|+.||++||||+++|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=94.22 E-value=0.053 Score=62.89 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.4
Q ss_pred cccccccc
Q 000708 485 KSIQELDL 492 (1340)
Q Consensus 485 kp~~elDl 492 (1340)
+++..++|
T Consensus 265 ~~~e~v~L 272 (293)
T PTZ00146 265 KPKEQLTL 272 (293)
T ss_pred ceEEEEec
Confidence 33444444
No 10
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=93.07 E-value=0.068 Score=63.79 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=8.8
Q ss_pred ChHHHHHHHHHH
Q 000708 179 DEHVYKSFLEIL 190 (1340)
Q Consensus 179 dPevYk~FLeIL 190 (1340)
=|.+|.-||+-|
T Consensus 200 LPQafdlFLKhl 211 (641)
T KOG3915|consen 200 LPQAFDLFLKHL 211 (641)
T ss_pred cHHHHHHHHHHH
Confidence 477888888754
No 11
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=92.16 E-value=0.16 Score=59.16 Aligned_cols=7 Identities=29% Similarity=0.558 Sum_probs=2.5
Q ss_pred CcccCCC
Q 000708 17 PLTTAPP 23 (1340)
Q Consensus 17 ~~~~~~~ 23 (1340)
|+--+||
T Consensus 309 ~nE~~pp 315 (465)
T KOG3973|consen 309 TNEMVPP 315 (465)
T ss_pred cccCCCC
Confidence 3333333
No 12
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.48 E-value=0.24 Score=57.68 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.4
Q ss_pred ccCCCC
Q 000708 19 TTAPPR 24 (1340)
Q Consensus 19 ~~~~~~ 24 (1340)
.-||-|
T Consensus 300 grvPDR 305 (465)
T KOG3973|consen 300 GRVPDR 305 (465)
T ss_pred ccCCCC
Confidence 334444
No 13
>PLN03138 Protein TOC75; Provisional
Probab=90.09 E-value=0.31 Score=63.14 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHhhhhcCCCCHHHHHHHHHHH
Q 000708 382 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDL 412 (1340)
Q Consensus 382 ~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~f 412 (1340)
+++.+||+..+ +.++.+++++|..-+..|
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I 310 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRV 310 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHH
Confidence 67788888777 566678888887665543
No 14
>PLN03138 Protein TOC75; Provisional
Probab=88.27 E-value=0.45 Score=61.66 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=10.0
Q ss_pred ccCcHHHHHHHHHHhh
Q 000708 196 EHKDINEVYSEVASLF 211 (1340)
Q Consensus 196 ~~~si~eV~~qVa~LF 211 (1340)
...+..+|.+.+..|+
T Consensus 180 ~v~trsqLq~dv~~I~ 195 (796)
T PLN03138 180 GVYTKAQLQKELETLA 195 (796)
T ss_pred CccCHHHHHHHHHHHH
Confidence 4445666667676666
No 15
>PHA00370 III attachment protein
Probab=85.78 E-value=1.6 Score=49.37 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHhc
Q 000708 81 ALTYLKEVKDMFQ 93 (1340)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1340)
+..--+++|..+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 4444456666654
No 16
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=85.56 E-value=0.62 Score=56.10 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=3.0
Q ss_pred HHhhhCCC
Q 000708 220 EFTRFLPD 227 (1340)
Q Consensus 220 EF~~FLP~ 227 (1340)
+|..+.-|
T Consensus 260 DFe~Ly~D 267 (641)
T KOG3915|consen 260 DFETLYND 267 (641)
T ss_pred cHHHHHhh
Confidence 34333333
No 17
>PHA00370 III attachment protein
Probab=84.75 E-value=2.1 Score=48.52 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.8
Q ss_pred chHHHHHHHHHHHHHc
Q 000708 161 EFEEAITFVNKIKKRF 176 (1340)
Q Consensus 161 ef~~Ai~FvnKIK~RF 176 (1340)
+|.-....|+.||--|
T Consensus 257 e~~I~CdKId~~k~v~ 272 (297)
T PHA00370 257 EFIIGCDKINDFKGVF 272 (297)
T ss_pred hhhhcchhHHHHHHHH
Confidence 3444445555555443
No 18
>COG4371 Predicted membrane protein [Function unknown]
Probab=82.13 E-value=1.7 Score=49.22 Aligned_cols=8 Identities=38% Similarity=0.335 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 000708 202 EVYSEVAS 209 (1340)
Q Consensus 202 eV~~qVa~ 209 (1340)
.|.++.+-
T Consensus 181 ~vlQEA~L 188 (334)
T COG4371 181 RVLQEAAL 188 (334)
T ss_pred HHHHHHHH
Confidence 34444333
No 19
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=79.10 E-value=21 Score=40.24 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=4.0
Q ss_pred ccChhHHh
Q 000708 128 KGHNNLIF 135 (1340)
Q Consensus 128 kGhpdLI~ 135 (1340)
+.|.+|+.
T Consensus 138 RHHSNLLA 145 (238)
T PF02084_consen 138 RHHSNLLA 145 (238)
T ss_pred HHHHHHHh
Confidence 44555554
No 20
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=75.21 E-value=0.86 Score=50.98 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=8.7
Q ss_pred CCccccchhhhhHH
Q 000708 73 SQKLTTSDALTYLK 86 (1340)
Q Consensus 73 ~~~l~~~dAl~YL~ 86 (1340)
...|.++.-.-||+
T Consensus 27 sk~l~iq~KrfYlD 40 (263)
T KOG3074|consen 27 SKRLQIQHKRFYLD 40 (263)
T ss_pred hhhhhhhhheEEEE
Confidence 45566666666664
No 21
>COG4371 Predicted membrane protein [Function unknown]
Probab=72.81 E-value=4.1 Score=46.24 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=5.9
Q ss_pred HHHHHHHHhccChh
Q 000708 119 VIARVKDLFKGHNN 132 (1340)
Q Consensus 119 Vi~rVs~LFkGhpd 132 (1340)
|++...-.+-.||+
T Consensus 182 vlQEA~LalLRHPE 195 (334)
T COG4371 182 VLQEAALALLRHPE 195 (334)
T ss_pred HHHHHHHHHHcCCc
Confidence 34443433444554
No 22
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=72.31 E-value=13 Score=35.84 Aligned_cols=68 Identities=22% Similarity=0.409 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHhh--ccChhHHHHHhhhCCCCCCC
Q 000708 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLF--EDHADLLEEFTRFLPDTSAT 231 (1340)
Q Consensus 163 ~~Ai~FvnKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~LF--k~hPDLL~EF~~FLP~~~~~ 231 (1340)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++ ..|--|+++-..|+|..+..
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 5699999999999999999999999999999764 45666777777777 56677999999999987654
No 23
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=72.19 E-value=6.2 Score=48.40 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhhhccCcHHHHHHHHHHhhc
Q 000708 159 TVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE 212 (1340)
Q Consensus 159 ~vef~~Ai~FvnKIK~RF~~dPevYk~FLeIL~~y~~~~~si~eV~~qVa~LFk 212 (1340)
+..++-..++.+.|+.|..-. +-....+.++-.+|..|..
T Consensus 160 ~s~l~~~RTlr~al~Rria~~--------------~~~~~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 160 PSNLDKKRTLREALKRRIALG--------------RPRRRELRELEEELEELEA 199 (421)
T ss_pred HHHHHHHHHhhHHHHHHHHhc--------------CCccccHHHHHHHHHHHhc
Confidence 345566666666666654321 1113346666667776654
No 24
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.34 E-value=13 Score=44.45 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHH------HHHhccCChHHHHHHHHHHhccC
Q 000708 95 QREKYDMFLEVMK------DFKAQRTDTAGVIARVKDLFKGH 130 (1340)
Q Consensus 95 ~p~vY~eFLeIMk------dfk~~~idt~gVi~rVs~LFkGh 130 (1340)
+|++--.|.++|+ .|.+.. -+..||..++.+|-|-
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 4566666666643 444433 3468999999999874
No 25
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=67.60 E-value=14 Score=34.89 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=15.8
Q ss_pred CCccccch---hh-hhHHHHHHHhcCChHHH
Q 000708 73 SQKLTTSD---AL-TYLKEVKDMFQDQREKY 99 (1340)
Q Consensus 73 ~~~l~~~d---Al-~YL~~VK~~F~d~p~vY 99 (1340)
.+++|.++ -| .|....+..+-.+-+-|
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y 67 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSY 67 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556443 23 78877777775554444
No 26
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=66.48 E-value=21 Score=34.41 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=56.5
Q ss_pred chhhhhHHHHHHHhcCChHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcc--ChhHHhhhhhcCCccccc
Q 000708 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEI 147 (1340)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rVs~LFkG--hpdLI~GFN~FLP~gy~I 147 (1340)
+-|..|..+|..-+.++|.+-+..+++++.|-+.+ +++.+...+.-++.. |--||...-.|+|.-++.
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 45889999999999999999999999999997754 566777777767664 567999999999986654
No 27
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=65.99 E-value=11 Score=43.18 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=8.0
Q ss_pred hccccccccCCCcc
Q 000708 484 AKSIQELDLSNCQR 497 (1340)
Q Consensus 484 ~kp~~elDls~c~r 497 (1340)
.+|...|-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 35555666666654
No 28
>PTZ00110 helicase; Provisional
Probab=57.70 E-value=23 Score=44.88 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=4.7
Q ss_pred ChhHHHHHHHH
Q 000708 728 DSNIHEDLYKL 738 (1340)
Q Consensus 728 D~~I~~D~~~L 738 (1340)
|..+..++.++
T Consensus 485 ~~~~~~~l~~~ 495 (545)
T PTZ00110 485 KYRLARDLVKV 495 (545)
T ss_pred hHHHHHHHHHH
Confidence 33444444444
No 29
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.59 E-value=22 Score=41.23 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=23.3
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 000708 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1340)
Q Consensus 83 ~YL~~VK~~F~d~p~vY~eFLeIMkdfk~ 111 (1340)
.++++++.+|.=+...-+.|+..|.+|-.
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 57899999999544456899999999964
No 30
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=54.41 E-value=11 Score=48.78 Aligned_cols=8 Identities=50% Similarity=1.136 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 000708 57 SGVGGGGG 64 (1340)
Q Consensus 57 ~~~~~~g~ 64 (1340)
||++||||
T Consensus 630 ~~~~~~~~ 637 (653)
T PTZ00009 630 GGMPGGAG 637 (653)
T ss_pred CCCCCCCC
Confidence 33444433
No 31
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=53.59 E-value=19 Score=45.18 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 000708 403 NDLQNLVTDLL 413 (1340)
Q Consensus 403 ~ELv~lV~~fL 413 (1340)
+||-.||..||
T Consensus 371 ee~~~lv~tli 381 (727)
T PF05642_consen 371 EELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHHH
Confidence 34555555555
No 32
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=52.61 E-value=45 Score=39.71 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=60.9
Q ss_pred CChHHHHHHHHHHhccChh---HHhhhhhcCCccccccCCCCC------CCCCCccchHHHHHHHH-HHHHHcCCChHHH
Q 000708 114 TDTAGVIARVKDLFKGHNN---LIFGFNTFLPKGYEITLDEDE------APPKKTVEFEEAITFVN-KIKKRFHNDEHVY 183 (1340)
Q Consensus 114 idt~gVi~rVs~LFkGhpd---LI~GFN~FLP~gy~I~l~~de------~pp~~~vef~~Ai~Fvn-KIK~RF~~dPevY 183 (1340)
+|..++-.+|++|+..|=. .+.-|..+=|..-.|.+-.++ .-+.+......-..+++ +|+.++..+|..|
T Consensus 117 ~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~ 196 (335)
T PF11867_consen 117 PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRY 196 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5778888888888887631 112232221111112211110 01122223333344444 7899999999999
Q ss_pred HHHH----HHHHHhhhccCcHHHHHHHHHHhhc
Q 000708 184 KSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1340)
Q Consensus 184 k~FL----eIL~~y~~~~~si~eV~~qVa~LFk 212 (1340)
++|- ++|..|+++.++..++++++..|-+
T Consensus 197 ~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 197 KKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 9888 5889999999999999999988754
No 33
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=51.44 E-value=23 Score=41.60 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHhhccChhH
Q 000708 199 DINEVYSEVASLFEDHADL 217 (1340)
Q Consensus 199 si~eV~~qVa~LFk~hPDL 217 (1340)
-+..|.+++.-.|--|||.
T Consensus 138 Gl~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHHhCcCc
Confidence 3456666666655555554
No 34
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=47.36 E-value=28 Score=43.83 Aligned_cols=7 Identities=43% Similarity=0.610 Sum_probs=3.8
Q ss_pred HHHHhhc
Q 000708 374 DKVKEKL 380 (1340)
Q Consensus 374 DKVKk~L 380 (1340)
.|+|++|
T Consensus 363 ~~lk~fl 369 (727)
T PF05642_consen 363 EKLKKFL 369 (727)
T ss_pred HHHHHHH
Confidence 3555555
No 35
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=46.23 E-value=13 Score=42.07 Aligned_cols=10 Identities=40% Similarity=0.707 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q 000708 184 KSFLEILNMY 193 (1340)
Q Consensus 184 k~FLeIL~~y 193 (1340)
-.|+++|+.|
T Consensus 71 aef~d~l~~f 80 (263)
T KOG3074|consen 71 AEFRDILNDF 80 (263)
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 36
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=45.41 E-value=28 Score=34.47 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=21.5
Q ss_pred CCCCCCCCCCccccchhhhhHHHHHHHhc
Q 000708 65 GMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1340)
Q Consensus 65 g~~~g~~~~~~l~~~dAl~YL~~VK~~F~ 93 (1340)
+.++......++.+.....|-+.|+..++
T Consensus 52 ~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 52 GGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CccccccCceEEEEEECCchHHHHHHHHH
Confidence 33345566788899999999988887764
No 37
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=44.92 E-value=23 Score=40.22 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.2
Q ss_pred cchhhhhHHHHHHHhcC
Q 000708 78 TSDALTYLKEVKDMFQD 94 (1340)
Q Consensus 78 ~~dAl~YL~~VK~~F~d 94 (1340)
--|+...|..|..+++.
T Consensus 70 ~peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 70 SPEEAGRAQRVQAQYGS 86 (277)
T ss_pred ChhHhhhhccchhhhcc
Confidence 36888999999999984
No 38
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=44.72 E-value=42 Score=43.80 Aligned_cols=19 Identities=32% Similarity=0.581 Sum_probs=13.5
Q ss_pred ccccccchhHHHHHHHHHH
Q 000708 679 QDSKNLSTKSLVAEIKQFK 697 (1340)
Q Consensus 679 ~DkK~ls~K~Lv~EIe~i~ 697 (1340)
.|-|-.+..-+++.|.+.+
T Consensus 968 Fd~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 968 FDPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred cCcccCcHHHHHHHHHHHH
Confidence 3566677888888887764
No 39
>PRK05325 hypothetical protein; Provisional
Probab=42.58 E-value=24 Score=43.19 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=11.7
Q ss_pred ccchHHHHHHHHHHHHHcC
Q 000708 159 TVEFEEAITFVNKIKKRFH 177 (1340)
Q Consensus 159 ~vef~~Ai~FvnKIK~RF~ 177 (1340)
+...+--..+.+.+|.|.+
T Consensus 144 ~~~l~~~RT~r~al~Rria 162 (401)
T PRK05325 144 PSNLDKKRTLREALKRRIA 162 (401)
T ss_pred cccchHHHHHHHHHHHHhh
Confidence 3345555667777777664
No 40
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.06 E-value=43 Score=42.75 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=5.0
Q ss_pred hHHHHHHhhc
Q 000708 371 IFCDKVKEKL 380 (1340)
Q Consensus 371 aFFDKVKk~L 380 (1340)
+|.-+++.++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 41
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=42.04 E-value=25 Score=43.39 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHhhhhc
Q 000708 382 SDDYQAFLKCLHIYSN 397 (1340)
Q Consensus 382 ~~~Y~eFLKcLnLYsQ 397 (1340)
+-.=..|.++|.-|.+
T Consensus 302 eGda~rF~~i~~~Y~k 317 (419)
T PRK10930 302 QGEVARFAKLLPEYKA 317 (419)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 4455678888887765
No 42
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=41.05 E-value=59 Score=42.56 Aligned_cols=16 Identities=13% Similarity=0.713 Sum_probs=7.1
Q ss_pred HHHHHHhhcChHHHHHHHH
Q 000708 372 FCDKVKEKLCSDDYQAFLK 390 (1340)
Q Consensus 372 FFDKVKk~L~~~~Y~eFLK 390 (1340)
-|+-||+. +.|..||+
T Consensus 807 ACEE~rkS---esFs~lLe 822 (1102)
T KOG1924|consen 807 ACEELRKS---ESFSKLLE 822 (1102)
T ss_pred HHHHHHhh---hhHHHHHH
Confidence 34555543 34444443
No 43
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=38.08 E-value=54 Score=40.57 Aligned_cols=6 Identities=17% Similarity=0.539 Sum_probs=2.4
Q ss_pred cccCCc
Q 000708 13 QFKRPL 18 (1340)
Q Consensus 13 ~~~~~~ 18 (1340)
.++-|.
T Consensus 51 ~V~IP~ 56 (421)
T PF04285_consen 51 KVSIPI 56 (421)
T ss_pred eEeecC
Confidence 334443
No 44
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=37.64 E-value=78 Score=29.91 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=38.4
Q ss_pred hHHHHHHhhcChHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhcc
Q 000708 371 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 415 (1340)
Q Consensus 371 aFFDKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~ 415 (1340)
..|..+++.|.++......+..+-|-+..|+|+||+..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 367888888886667777777788899999999999999999994
No 45
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=35.19 E-value=34 Score=44.82 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhcccCcccc
Q 000708 640 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 676 (1340)
Q Consensus 640 KQK~eEWr~aq~e~nKvWrev~eK-Ny~KSLDHq~~~F 676 (1340)
.+|.|+-++-|+.-|.-=.++.-| -.+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345566665555433222222222 2345688888764
No 46
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.17 E-value=66 Score=38.15 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=5.7
Q ss_pred HHHHHHHhhccC
Q 000708 203 VYSEVASLFEDH 214 (1340)
Q Consensus 203 V~~qVa~LFk~h 214 (1340)
+|..+...|+-.
T Consensus 180 lyR~~l~~L~l~ 191 (362)
T KOG3875|consen 180 LYRLLLKMLKLS 191 (362)
T ss_pred HHHHHHHHhCCC
Confidence 445555554433
No 47
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=33.59 E-value=64 Score=41.92 Aligned_cols=8 Identities=25% Similarity=0.114 Sum_probs=3.4
Q ss_pred ChhHHhhh
Q 000708 130 HNNLIFGF 137 (1340)
Q Consensus 130 hpdLI~GF 137 (1340)
||-|..-|
T Consensus 197 ~p~~~~~~ 204 (828)
T PF04094_consen 197 SPFLFVFF 204 (828)
T ss_pred CchHhhhc
Confidence 44444433
No 48
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=33.01 E-value=43 Score=40.63 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=16.7
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000708 387 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1340)
Q Consensus 387 eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FL 427 (1340)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46677777755444320 23456666666534
No 49
>PF09060 L27_N: L27_N; InterPro: IPR015145 The L27_N domain plays a role in the biogenesis of tight junctions and in the establishment of cell polarity in epithelial cells. Each L27_N domain consists of three alpha-helices, the first two of which form an antiparallel coiled-coil. Two L27 domains come together to form a four-helical bundle with the antiparallel coiled-coils formed by the first two helices. The third helix of each domain forms another coiled-coil packing at one end of the four-helix bundle, creating a large hydrophobic interface: the hydrophobic interactions are the major force that drives heterodimer formation []. ; PDB: 1Y76_B 3UIT_B 1VF6_C.
Probab=30.55 E-value=57 Score=28.82 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhHHHHHH
Q 000708 1224 LDKLLYRLCKQLQTVAADEMDNKLIQL 1250 (1340)
Q Consensus 1224 iDKLi~~lvKqlq~iv~De~~~~ll~L 1250 (1340)
||.|++++ |++||+++|.-+++=++|
T Consensus 2 leell~sL-k~iqh~L~D~qSQ~Dv~l 27 (49)
T PF09060_consen 2 LEELLSSL-KHIQHCLNDSQSQQDVEL 27 (49)
T ss_dssp HHHHHHHH-HHHHCCH-SHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHhhccHhhHHhHHH
Confidence 56777664 999999999888774444
No 50
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=29.10 E-value=87 Score=32.94 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=21.8
Q ss_pred hhhhhHHHHHHHhcCC-hHHHHHHHHHHHHHHh
Q 000708 80 DALTYLKEVKDMFQDQ-REKYDMFLEVMKDFKA 111 (1340)
Q Consensus 80 dAl~YL~~VK~~F~d~-p~vY~eFLeIMkdfk~ 111 (1340)
-+-..|+..+.|+.|+ ..+-+.|-+|++--|-
T Consensus 16 sk~al~k~~~~Rl~ddIkS~~dNF~~Ii~~Akv 48 (148)
T KOG3304|consen 16 SKEALLKSYNKRLKDDIKSIMDNFTEIIKTAKV 48 (148)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHhc
Confidence 3345566666666655 5688899999887664
No 51
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=28.80 E-value=65 Score=38.70 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.3
Q ss_pred cccCCCcccCCcc
Q 000708 7 DVYGGSQFKRPLT 19 (1340)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (1340)
|+.-|..||....
T Consensus 37 DI~KG~KLKK~~t 49 (437)
T KOG4462|consen 37 DIQKGKKLKKATT 49 (437)
T ss_pred Hhhhcceecceec
Confidence 4555777777664
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=28.38 E-value=62 Score=36.71 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHHHHhccCChHHHHHH
Q 000708 95 QREKYDMFLEVMKDFKAQRTDTAGVIAR 122 (1340)
Q Consensus 95 ~p~vY~eFLeIMkdfk~~~idt~gVi~r 122 (1340)
.|.++..|-.+=+| .+++|...++..-
T Consensus 56 ~~~~~~~f~~vD~d-~sg~i~~~eLq~a 82 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD-RSGRILAKELQQA 82 (221)
T ss_pred cHHHHHHHHhhCcc-ccccccHHHHHHH
Confidence 45666666555333 2456666666544
No 53
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=27.68 E-value=81 Score=34.93 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=11.8
Q ss_pred ChhHHHHHhhhCCCCCC
Q 000708 214 HADLLEEFTRFLPDTSA 230 (1340)
Q Consensus 214 hPDLL~EF~~FLP~~~~ 230 (1340)
.||-|.=..+|||....
T Consensus 128 ~p~KllPl~RFLP~p~~ 144 (215)
T KOG3262|consen 128 DPDKLLPLDRFLPQPVG 144 (215)
T ss_pred cccccCcHhhcCCCCCC
Confidence 36666677889988733
No 54
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=27.58 E-value=74 Score=39.79 Aligned_cols=126 Identities=19% Similarity=0.259 Sum_probs=77.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCcccccchhH------HHHHHHHhhCCCH--------HHHHHH
Q 000708 558 DDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSAL------NLRCIERLYGDHG--------LDVMDI 623 (1340)
Q Consensus 558 DERfElDm~IE~~~~tI~~Le~l~~ki~~~~~e~~~~~~l~~~L~~i------~~R~I~rIYGd~g--------~evie~ 623 (1340)
|+..|||.+|.+...|-+.|..+-+.|..+-++..+ ++...+- |.-..++++|... .|+|++
T Consensus 523 d~~ield~~~~sl~nar~i~n~~~k~~p~lip~~p~----ddd~~~a~~~a~ey~pt~rk~~gn~~kkik~~itae~i~~ 598 (758)
T COG5324 523 DDIIELDPLIGSLENARRIVNYFKKNIPELIPNDPS----DDDYAAALNYAVEYVPTYRKTFGNDSKKIKNKITAEGITG 598 (758)
T ss_pred cceeecccccchhhhHHHHHHHHHhhCccccCCCCC----chHHHHHHhhhhhcCchhhhhhCCchHHhhhheehhhccc
Confidence 678899999999988888887777776655443332 2222222 3334567777432 244444
Q ss_pred HH---hCcCcchhHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHH-------------hhhhhcccCccccccccccccc
Q 000708 624 LR---KNPAIALPVMLTRLKQKQEEWT--KCRSDFNKVWAEIYAK-------------NHYKSLDHRSFYFKQQDSKNLS 685 (1340)
Q Consensus 624 L~---knP~~AlPVVL~RLKQK~eEWr--~aq~e~nKvWrev~eK-------------Ny~KSLDHq~~~FKq~DkK~ls 685 (1340)
.. +....-.-++|. ||.-|-. ..-...|++|.+...+ |-.|+...|...-|..||-+++
T Consensus 599 ~~~c~~~~~~~f~~ll~---~k~~~~sl~~vlt~a~~~wq~~~~ryt~q~s~~~~~i~~sq~~~n~q~~~~k~t~km~fr 675 (758)
T COG5324 599 SSTCFKKAPRYFGVLLD---RKTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNSQHMHDKNTTKMGFR 675 (758)
T ss_pred hHHHHHHhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccccccccccccccee
Confidence 33 333333455665 4554444 4446889999988766 3456667777777777777766
Q ss_pred hhHHH
Q 000708 686 TKSLV 690 (1340)
Q Consensus 686 ~K~Lv 690 (1340)
-.+|+
T Consensus 676 i~~l~ 680 (758)
T COG5324 676 ITHLV 680 (758)
T ss_pred EEEEe
Confidence 65554
No 55
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=27.01 E-value=3.5e+02 Score=28.44 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=49.3
Q ss_pred cCCCCcccccchhHHHHHHHHhhC--CCHHHHHHHHH-----------hCcCcchhHHHHHHHHHHHHHHHHHHHhhH
Q 000708 591 LETPFHLKDHFSALNLRCIERLYG--DHGLDVMDILR-----------KNPAIALPVMLTRLKQKQEEWTKCRSDFNK 655 (1340)
Q Consensus 591 ~~~~~~l~~~L~~i~~R~I~rIYG--d~g~evie~L~-----------knP~~AlPVVL~RLKQK~eEWr~aq~e~nK 655 (1340)
+..||.++-|+..=|+|.|+|+.. +++.+..+.-. .--..-.|.+|.||+.+..+.+..|+.+..
T Consensus 41 ~GQPIlVGHHSE~R~Rr~~eR~~~~m~kav~~~~kA~y~~~rA~aa~~~~i~~~~Pda~~ri~~~la~~r~~q~~mk~ 118 (126)
T PF12083_consen 41 FGQPILVGHHSEKRHRRYRERIHNRMGKAVEAMDKAEYYEQRAAAAGRTAISSDDPDALRRIKKKLAELRASQRRMKA 118 (126)
T ss_pred CCCCeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888999999999999988 45555443322 112334688899999999999999998754
No 56
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=26.77 E-value=69 Score=41.64 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.6
Q ss_pred Cccccc
Q 000708 142 PKGYEI 147 (1340)
Q Consensus 142 P~gy~I 147 (1340)
||+..+
T Consensus 165 Ppkwtf 170 (828)
T PF04094_consen 165 PPKWTF 170 (828)
T ss_pred CCCCcc
Confidence 444444
No 57
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=26.74 E-value=76 Score=32.63 Aligned_cols=64 Identities=20% Similarity=0.424 Sum_probs=46.3
Q ss_pred hhhhhhhHHHHHHhhcC---hHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000708 365 IYNQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1340)
Q Consensus 365 ~~~eElaFFDKVKk~L~---~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fL--G~~pDLm~~Fk~FLg 428 (1340)
...+-+..|+++.+.+. .+-|-.|-.+|..|...+..+=++-.-+..++ |-+++||.+|+.++.
T Consensus 42 evee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 42 EVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 44456789999999887 66788999999999887777766666677777 569999999999874
No 58
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=26.53 E-value=58 Score=39.37 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=10.6
Q ss_pred hhHHhhhhhcCCccccccCC
Q 000708 131 NNLIFGFNTFLPKGYEITLD 150 (1340)
Q Consensus 131 pdLI~GFN~FLP~gy~I~l~ 150 (1340)
-||+.+...|=|-.|-..+|
T Consensus 46 adl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 46 ADLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred hHHHHHHhcCCceEEEEecc
Confidence 35555555555555555444
No 59
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=26.21 E-value=1.9e+02 Score=28.06 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=48.5
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhccc
Q 000708 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFERC 430 (1340)
Q Consensus 370 laFFDKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~--pDLm~~Fk~FLg~~ 430 (1340)
-.|.+||...|....-+.|..+|+.|.++- +-.+||.-+..+|... -.|+.+-..+|...
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~~ 67 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPPK 67 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCHH
Confidence 358999999999334778999999999999 9999999999999642 25777777777543
No 60
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=25.49 E-value=79 Score=37.37 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCC
Q 000708 166 ITFVNKIKKRFHND 179 (1340)
Q Consensus 166 i~FvnKIK~RF~~d 179 (1340)
+.|++.++.+|...
T Consensus 152 ~~f~~~L~~~~ga~ 165 (292)
T PF04228_consen 152 LSFFDELQQRFGAS 165 (292)
T ss_pred hHHHHHHHHHhCCc
Confidence 35888888888654
No 61
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=25.45 E-value=1.4e+02 Score=30.42 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=42.5
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHhccChH
Q 000708 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418 (1340)
Q Consensus 370 laFFDKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~pD 418 (1340)
...|.-+|+.+..+.=++|+.+|..|.++.|+...++.+...++.++++
T Consensus 56 ~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~~ 104 (117)
T PF08349_consen 56 QHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYPD 104 (117)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCCC
Confidence 4566677888886667899999999999999999999999999988873
No 62
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=25.24 E-value=2.7e+02 Score=32.84 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=8.6
Q ss_pred HHHHHHHhcC--ChHHHHHHHH
Q 000708 85 LKEVKDMFQD--QREKYDMFLE 104 (1340)
Q Consensus 85 L~~VK~~F~d--~p~vY~eFLe 104 (1340)
+..|=+.++. +-+..-.||-
T Consensus 66 vacvCe~L~q~Gd~erL~rFlw 87 (304)
T KOG0775|consen 66 VACVCESLQQGGDIERLGRFLW 87 (304)
T ss_pred HHHHHHHHHhccCHHHHHHHHH
Confidence 4444444443 3444444443
No 63
>PRK05325 hypothetical protein; Provisional
Probab=24.50 E-value=79 Score=38.94 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.5
Q ss_pred HHHHHhhh
Q 000708 388 FLKCLHIY 395 (1340)
Q Consensus 388 FLKcLnLY 395 (1340)
.|..+|+|
T Consensus 339 llp~~~~f 346 (401)
T PRK05325 339 LLPVCNYF 346 (401)
T ss_pred HHHHhhhe
Confidence 34444444
No 64
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=24.20 E-value=63 Score=39.09 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHhccChHHHHHHhhhhc
Q 000708 400 IKRNDLQNLVTDLLGKYMDLMDEFNHFFE 428 (1340)
Q Consensus 400 Isr~ELv~lV~~fLG~~pDLm~~Fk~FLg 428 (1340)
+++++-+.-+.+||= ||=--.||+|-+
T Consensus 359 ~SkQ~~v~~~~pflL--pDgSpSfKdys~ 385 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLL--PDGSPSFKDYSG 385 (494)
T ss_pred eccccccccCCceec--CCCCcchhhccc
Confidence 344454444544441 222234555544
No 65
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.78 E-value=97 Score=39.15 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.6
Q ss_pred hHHHHHHHhc
Q 000708 84 YLKEVKDMFQ 93 (1340)
Q Consensus 84 YL~~VK~~F~ 93 (1340)
-+..+|..|+
T Consensus 659 r~~~~r~af~ 668 (731)
T KOG0339|consen 659 RITAMRTAFQ 668 (731)
T ss_pred hHHHHHHHHH
Confidence 3455666654
No 66
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=21.45 E-value=5.1e+02 Score=26.65 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=56.9
Q ss_pred hcCChHHHHHHHHHHHHHHhc--cCChHHHHHHHHHHhccCh-hHHhhhhhcCCccccccCCCCCCCCCCccchHHHHHH
Q 000708 92 FQDQREKYDMFLEVMKDFKAQ--RTDTAGVIARVKDLFKGHN-NLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITF 168 (1340)
Q Consensus 92 F~d~p~vY~eFLeIMkdfk~~--~idt~gVi~rVs~LFkGhp-dLI~GFN~FLP~gy~I~l~~de~pp~~~vef~~Ai~F 168 (1340)
|..+|..|..|.++.+..-.. .++...=...+...++|-+ ++|.++.. ++ ..|..|+.
T Consensus 1 F~G~~~~~~~F~~~F~~~v~~n~~~~d~~K~~~L~~~L~G~A~~~i~~~~~--~~----------------~~Y~~a~~- 61 (145)
T PF03564_consen 1 FDGDPSEWPEFIDQFDSLVHENPDLSDIEKLNYLRSCLKGEAKELIRGLPL--SE----------------ENYEEAWE- 61 (145)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcchHHHHHHcccc--cc----------------hhhHHHHH-
Confidence 667899999999999998765 4555555677888888865 67776632 21 24455543
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhh
Q 000708 169 VNKIKKRFHNDEHVYKSFLEILNMYR 194 (1340)
Q Consensus 169 vnKIK~RF~~dPevYk~FLeIL~~y~ 194 (1340)
.++.||.+...+...+++-|....
T Consensus 62 --~L~~~yg~~~~i~~~~~~~l~~l~ 85 (145)
T PF03564_consen 62 --LLEERYGNPRRIIQALLEELRNLP 85 (145)
T ss_pred --HHHHHhCCchHHHHHHHHHHhccc
Confidence 567888766667777777766654
No 67
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=21.44 E-value=94 Score=37.90 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHc
Q 000708 161 EFEEAITFVNKIKKRF 176 (1340)
Q Consensus 161 ef~~Ai~FvnKIK~RF 176 (1340)
..+--..+.+.+|.|.
T Consensus 158 ~l~~~RT~r~al~Rri 173 (371)
T TIGR02877 158 NLDKKRTVIEALKRNQ 173 (371)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3344455555555554
No 68
>PRK09807 hypothetical protein; Provisional
Probab=20.93 E-value=89 Score=31.88 Aligned_cols=51 Identities=37% Similarity=0.400 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHh------c------cCChHHHHHHHHHHhccChhHHhhhh
Q 000708 88 VKDMFQDQREKYDMFLEVMKDFKA------Q------RTDTAGVIARVKDLFKGHNNLIFGFN 138 (1340)
Q Consensus 88 VK~~F~d~p~vY~eFLeIMkdfk~------~------~idt~gVi~rVs~LFkGhpdLI~GFN 138 (1340)
|-.-|..+|-....||.+=.||-+ | .+|+.-.|--|..||.|.|.||.---
T Consensus 2 vaalfgcqpylvqrflavdndfaailkgngqhaavdfavdiavaipvvqtlfngqpqlisqam 64 (161)
T PRK09807 2 VAALFGCQPYLVQRFLAVDNDFAAILKGNGQHAAVDFAVDIAVAIPVVQTLFNGQPQLISQAM 64 (161)
T ss_pred chhhhcCcHHHHHHHHHhcchHHHHHcCCCceeeeeeeeeeeeehHHHHHHhCCChHHHHHhh
Confidence 345688899999999999888864 1 24666778999999999999998643
Done!