Query         000708
Match_columns 1340
No_of_seqs    376 out of 657
Neff          4.9 
Searched_HMMs 29240
Date          Tue Mar 26 23:26:02 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m2/000708.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_13-17//hhsearch_pdb/000708hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2czy_A Paired amphipathic heli   1.0       1       1  189.4   8.8   76   75-150     1-76  (77)
  2 2cr7_A Paired amphipathic heli   1.0       1       1  184.2   8.9   76   71-146     3-78  (80)
  3 2f05_A Paired amphipathic heli   1.0       1       1  178.4   6.6   80   73-152     2-91  (105)
  4 1e91_A Paired amphipathic heli   1.0       1       1  172.4   7.1   74   73-146     2-85  (85)
  5 2ld7_B Paired amphipathic heli   1.0       1       1  171.6   7.3   72  361-432     3-75  (75)
  6 1g1e_B SIN3A; four-helix bundl   1.0       1       1  160.6   6.6   74   71-144     3-89  (89)
  7 2f05_A Paired amphipathic heli   1.0       1       1  152.2   8.4   77  157-233     2-88  (105)
  8 1g1e_B SIN3A; four-helix bundl   1.0       1       1  151.7   8.4   72  157-228     5-89  (89)
  9 1e91_A Paired amphipathic heli   1.0       1       1  151.4   9.7   73  157-229     2-84  (85)
 10 2cr7_A Paired amphipathic heli   1.0       1       1  143.5   7.6   74  157-230     5-78  (80)

No 1  
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=189.43  Aligned_cols=76  Identities=51%  Similarity=0.857  Sum_probs=74.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             6441035436999998721796889999999999984059927799999998306935884422038864433489
Q 000708           75 KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLD  150 (1340)
Q Consensus        75 ~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~idt~gVi~rV~~LFkghpdLI~GFN~FLP~gy~I~l~  150 (1340)
                      +++++||++||++||.+|+++|++|.+||+||++|+++++++++||+||+.||+||||||.|||+|||+||+|+|+
T Consensus         1 ~l~~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~~~~~~~v~~rv~~Lf~~hpdLi~gFn~FLP~~~~i~~~   76 (77)
T 2czy_A            1 PVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIP   76 (77)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTTTCHHHHHHHHTTSCSSSCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEECCC
T ss_conf             9878999999999999985685999999999999987699899999999999768879999999888997640598


No 2  
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=184.19  Aligned_cols=76  Identities=50%  Similarity=0.797  Sum_probs=73.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCC
Q ss_conf             8877644103543699999872179688999999999998405992779999999830693588442203886443
Q 000708           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYE  146 (1340)
Q Consensus        71 ~~~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~idt~gVi~rV~~LFkghpdLI~GFN~FLP~gy~  146 (1340)
                      ...++++++||++||++||.+|+++|++|++||+||++|+++++++++||+||++||+||||||.|||+|||+||.
T Consensus         3 s~~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            3 SGSSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             8889988999999999999998258599999999999998669989999999999986788999999988869878


No 3  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=178.41  Aligned_cols=80  Identities=28%  Similarity=0.593  Sum_probs=75.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             776441035436999998721796889999999999984059927----------7999999983069358844220388
Q 000708           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP  142 (1340)
Q Consensus        73 ~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~idt~----------gVi~rV~~LFkghpdLI~GFN~FLP  142 (1340)
                      .++++++||++||++||.||+++|++|.+||+||++|+.++++++          +|++||+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCCCCC
Q ss_conf             6443348999
Q 000708          143 KGYEITLDED  152 (1340)
Q Consensus       143 ~gy~I~l~~d  152 (1340)
                      ++|+|.++.+
T Consensus        82 ~~~~~~~~~~   91 (105)
T 2f05_A           82 EAKRSLFTGN   91 (105)
T ss_dssp             GGGC------
T ss_pred             CCCCCCCCCC
T ss_conf             7235688996


No 4  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=172.38  Aligned_cols=74  Identities=31%  Similarity=0.673  Sum_probs=70.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHH----------HHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf             7764410354369999987217968899999999999840599277----------999999983069358844220388
Q 000708           73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAG----------VIARVKDLFKGHNNLIFGFNTFLP  142 (1340)
Q Consensus        73 ~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~idt~g----------Vi~rV~~LFkghpdLI~GFN~FLP  142 (1340)
                      .++++++||++||++||.+|+++|++|.+||+||++|+.+++|++|          |+++|+.||+||||||.|||+|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCCC
Q ss_conf             6443
Q 000708          143 KGYE  146 (1340)
Q Consensus       143 ~gy~  146 (1340)
                      ++|+
T Consensus        82 ~~~~   85 (85)
T 1e91_A           82 EAKR   85 (85)
T ss_dssp             CCCC
T ss_pred             CCCC
T ss_conf             8669


No 5  
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=1.00  E-value=1  Score=171.58  Aligned_cols=72  Identities=35%  Similarity=0.636  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC
Q ss_conf             663210114468999985219-488999999985542188789899999999840294789998662024554
Q 000708          361 ALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCEN  432 (1340)
Q Consensus       361 a~k~~~~eElaFFDKVKk~L~-~e~Y~EFLKcLNLYsQeIIsr~ELv~lV~~lLGk~pDLl~~FkeFLg~~e~  432 (1340)
                      ++|+++.+|++||+|||++|+ +++|++||||||||+|+||+++||+++|.+|||+|||||+||+.||+|||+
T Consensus         3 ~~k~~~~de~~Ff~kVK~~l~~~~~Y~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~~pdL~~~Fk~Fl~~~e~   75 (75)
T 2ld7_B            3 ASKHGVGTESLFFDKVRKALRSAEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFNWFKNFLGYKES   75 (75)
T ss_dssp             STTTTSSHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHTTCHHHHHHHHHHHTCCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             2000638899999999998289778999999999860068679999999999984488999999998287888


No 6  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=160.64  Aligned_cols=74  Identities=30%  Similarity=0.603  Sum_probs=63.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf             8877644103543699999872179688999999999998405-------------992779999999830693588442
Q 000708           71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQR-------------TDTAGVIARVKDLFKGHNNLIFGF  137 (1340)
Q Consensus        71 ~~~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~-------------idt~gVi~rV~~LFkghpdLI~GF  137 (1340)
                      +..+++++++|++||++||.||+++|++|.+||+||++|+.++             |++.+|+++|+.||+||||||.||
T Consensus         3 ~~~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F   82 (89)
T 1g1e_B            3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF   82 (89)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf             77899878999999999999985593999999999999986567510000112235539999999999985499999999


Q ss_pred             HHCCCCC
Q ss_conf             2038864
Q 000708          138 NTFLPKG  144 (1340)
Q Consensus       138 N~FLP~g  144 (1340)
                      |+|||++
T Consensus        83 ~~FLP~~   89 (89)
T 1g1e_B           83 GQFLPDA   89 (89)
T ss_dssp             HTTCCCC
T ss_pred             HHHCCCC
T ss_conf             9878698


No 7  
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=1.00  E-value=1  Score=152.22  Aligned_cols=77  Identities=48%  Similarity=0.853  Sum_probs=71.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             875016999999999998707896899999999987542157----------6899999999942029469999812089
Q 000708          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK----------DINEVYSEVASLFEDHADLLEEFTRFLP  226 (1340)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~----------si~eV~~~Va~LF~ghPDLL~eF~~FLP  226 (1340)
                      .++++|++|++|||+||.||+++|++|++||+||++|+++++          ++.+||++|+.||++|||||.+|++|||
T Consensus         2 ~~~~~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~FLP   81 (105)
T 2f05_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (105)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99876899999999999998139499999999999998645665443223576999999999997669899999998787


Q ss_pred             CCCCCCC
Q ss_conf             9977876
Q 000708          227 DTSATSL  233 (1340)
Q Consensus       227 d~~~~~~  233 (1340)
                      +......
T Consensus        82 ~~~~~~~   88 (105)
T 2f05_A           82 EAKRSLF   88 (105)
T ss_dssp             GGGC---
T ss_pred             CCCCCCC
T ss_conf             7235688


No 8  
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00  E-value=1  Score=151.65  Aligned_cols=72  Identities=53%  Similarity=0.968  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH-------------HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             87501699999999999870789689999999998754215768-------------99999999942029469999812
Q 000708          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDI-------------NEVYSEVASLFEDHADLLEEFTR  223 (1340)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~si-------------~eV~~~Va~LF~ghPDLL~eF~~  223 (1340)
                      .++++|++|++||||||+||+++|++|++||+||++|+++++++             .+||++|+.||++|||||.+|++
T Consensus         5 ~~~~~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~   84 (89)
T 1g1e_B            5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQ   84 (89)
T ss_dssp             CCTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             89987899999999999998559399999999999998656751000011223553999999999998549999999998


Q ss_pred             HCCCC
Q ss_conf             08999
Q 000708          224 FLPDT  228 (1340)
Q Consensus       224 FLPd~  228 (1340)
                      |||++
T Consensus        85 FLP~~   89 (89)
T 1g1e_B           85 FLPDA   89 (89)
T ss_dssp             TCCCC
T ss_pred             HCCCC
T ss_conf             78698


No 9  
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00  E-value=1  Score=151.36  Aligned_cols=73  Identities=51%  Similarity=0.899  Sum_probs=69.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf             87501699999999999870789689999999998754215----------76899999999942029469999812089
Q 000708          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP  226 (1340)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~----------~si~eV~~~Va~LF~ghPDLL~eF~~FLP  226 (1340)
                      .++++|++|++|||+||.||+++|++|++||+||++|++++          +++.+||++|+.||+||||||.||++|||
T Consensus         2 ~~~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~FLP   81 (85)
T 1e91_A            2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP   81 (85)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf             99764999999999999998049699999999999998735565542213575999999999998669999999997786


Q ss_pred             CCC
Q ss_conf             997
Q 000708          227 DTS  229 (1340)
Q Consensus       227 d~~  229 (1340)
                      +..
T Consensus        82 ~~~   84 (85)
T 1e91_A           82 EAK   84 (85)
T ss_dssp             CCC
T ss_pred             CCC
T ss_conf             866


No 10 
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=1.00  E-value=1  Score=143.54  Aligned_cols=74  Identities=34%  Similarity=0.669  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
Q ss_conf             87501699999999999870789689999999998754215768999999999420294699998120899977
Q 000708          157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSA  230 (1340)
Q Consensus       157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~si~eV~~~Va~LF~ghPDLL~eF~~FLPd~~~  230 (1340)
                      .+++++++|++||++||.||+++|++|++||+||++|+.+.+++.+|+.+|+.||++|||||.+|+.|||....
T Consensus         5 ~~~~~~~dA~~yl~~VK~rF~~~p~~Y~~FL~im~~fk~~~~~~~~v~~rV~~Lf~~hpdLi~gFn~FLP~~~~   78 (80)
T 2cr7_A            5 SSGVHVEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPSGPS   78 (80)
T ss_dssp             CCCCCSCCSHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHGGGCHHHHHHHHHHSSCSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf             89988999999999999998258599999999999998669989999999999986788999999988869878


Done!