Query 000708
Match_columns 1340
No_of_seqs 376 out of 657
Neff 4.9
Searched_HMMs 13730
Date Tue Mar 26 23:33:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000708.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H2_13-17//hhsearch_scop/000708hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.8 1E-20 7.3E-25 157.2 6.5 74 73-146 2-85 (85)
2 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.8 5.3E-20 3.8E-24 152.3 7.3 74 71-144 3-89 (89)
3 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.7 2.5E-17 1.8E-21 133.9 8.0 72 157-228 5-89 (89)
4 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.7 4.2E-17 3.1E-21 132.3 8.4 73 157-229 2-84 (85)
5 d1wlma1 a.39.1.11 (A:8-145) Pr 19.3 15 0.0011 11.5 2.5 43 371-413 57-103 (138)
6 d1seda_ a.219.1.1 (A:) Hypothe 10.6 26 0.0019 9.8 0.6 60 369-428 45-109 (112)
7 d3er7a1 d.17.4.24 (A:5-122) Un 6.4 52 0.0038 7.8 0.9 31 386-416 18-57 (118)
8 d2ev0a2 a.76.1.1 (A:63-136) Ma 4.0 93 0.0068 6.1 2.6 12 382-393 15-26 (74)
9 d1kvka2 d.58.26.3 (A:226-394) 3.9 95 0.0069 6.0 3.2 55 167-221 20-83 (169)
10 d1bgva2 c.58.1.1 (A:1-194) Glu 3.7 1E+02 0.0075 5.8 5.6 47 163-223 2-53 (194)
No 1
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=1e-20 Score=157.23 Aligned_cols=74 Identities=30% Similarity=0.640 Sum_probs=69.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHHCCC
Q ss_conf 776441035436999998721796889999999999984059927----------7999999983069358844220388
Q 000708 73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP 142 (1340)
Q Consensus 73 ~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~~idt~----------gVi~rV~~LFkghpdLI~GFN~FLP 142 (1340)
...+.++||++||++||.+|+++|++|++||+||++|+.++|+++ +|+.||+.||+||||||.|||+|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCCC
Q ss_conf 6443
Q 000708 143 KGYE 146 (1340)
Q Consensus 143 ~gy~ 146 (1340)
.||+
T Consensus 82 ~~~~ 85 (85)
T d2f05a1 82 EAKR 85 (85)
T ss_dssp GGGC
T ss_pred CCCC
T ss_conf 6559
No 2
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.80 E-value=5.3e-20 Score=152.28 Aligned_cols=74 Identities=30% Similarity=0.593 Sum_probs=68.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 887764410354369999987217968899999999999840-------------5992779999999830693588442
Q 000708 71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQ-------------RTDTAGVIARVKDLFKGHNNLIFGF 137 (1340)
Q Consensus 71 ~~~~~l~~~dAl~YL~~VK~rF~d~P~vY~~FLeIMkdfk~~-------------~idt~gVi~rV~~LFkghpdLI~GF 137 (1340)
++.+++++++|++||++||.+|+++|++|++||+||++|+.+ ++++++|++||++||+||||||.||
T Consensus 3 ~~~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~F 82 (89)
T d1s5qb_ 3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF 82 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 44699759999999999999981585999999999999997300111001212234669999999999985487999989
Q ss_pred HHCCCCC
Q ss_conf 2038864
Q 000708 138 NTFLPKG 144 (1340)
Q Consensus 138 N~FLP~g 144 (1340)
|+|||..
T Consensus 83 n~FLPes 89 (89)
T d1s5qb_ 83 GQFLPDA 89 (89)
T ss_dssp HHHSCCC
T ss_pred HHHCCCC
T ss_conf 9668799
No 3
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.69 E-value=2.5e-17 Score=133.88 Aligned_cols=72 Identities=53% Similarity=0.949 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 875016999999999998707896899999999987542157-------------6899999999942029469999812
Q 000708 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK-------------DINEVYSEVASLFEDHADLLEEFTR 223 (1340)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~-------------si~eV~~~Va~LF~ghPDLL~eF~~ 223 (1340)
.+|++|++|++||++||.||+++|++|.+||+||++|+++.+ +..+|+.+|+.||++|||||.+|+.
T Consensus 5 ~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~Fn~ 84 (89)
T d1s5qb_ 5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQ 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 69975999999999999998158599999999999999730011100121223466999999999998548799998996
Q ss_pred HCCCC
Q ss_conf 08999
Q 000708 224 FLPDT 228 (1340)
Q Consensus 224 FLPd~ 228 (1340)
|||++
T Consensus 85 FLPes 89 (89)
T d1s5qb_ 85 FLPDA 89 (89)
T ss_dssp HSCCC
T ss_pred HCCCC
T ss_conf 68799
No 4
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.68 E-value=4.2e-17 Score=132.30 Aligned_cols=73 Identities=51% Similarity=0.899 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 87501699999999999870789689999999998754215----------76899999999942029469999812089
Q 000708 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1340)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~----------~si~eV~~~Va~LF~ghPDLL~eF~~FLP 226 (1340)
+++++|++|++||++||.||+++|++|++||+||++|+++. .++.+|+.+|+.||++|||||.+|+.|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCC
Q ss_conf 997
Q 000708 227 DTS 229 (1340)
Q Consensus 227 d~~ 229 (1340)
+..
T Consensus 82 ~~~ 84 (85)
T d2f05a1 82 EAK 84 (85)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 655
No 5
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.30 E-value=15 Score=11.47 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=30.8
Q ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH
Q ss_conf 68999985219-48899999998554218---878989999999984
Q 000708 371 IFCDKVKEKLC-SDDYQAFLKCLHIYSNG---IIKRNDLQNLVTDLL 413 (1340)
Q Consensus 371 aFFDKVKk~L~-~e~Y~EFLKcLNLYsQe---IIsr~ELv~lV~~lL 413 (1340)
..|.|||..-. .-+|.+|+++|..-.+. -++..|.++.+..++
T Consensus 57 iiF~k~k~k~~r~i~f~~F~~aL~~iA~kk~~~~s~~e~~~~i~~~i 103 (138)
T d1wlma1 57 IVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLI 103 (138)
T ss_dssp HHHHHHSCSSCSEEEHHHHHHHHHHTHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88987404778626799999999999998547844889999999999
No 6
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=10.59 E-value=26 Score=9.84 Aligned_cols=60 Identities=23% Similarity=0.514 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHC
Q ss_conf 4468999985219---48899999998554218878989999999984--029478999866202
Q 000708 369 GFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1340)
Q Consensus 369 ElaFFDKVKk~L~---~e~Y~EFLKcLNLYsQeIIsr~ELv~lV~~lL--Gk~pDLl~~FkeFLg 428 (1340)
=+.+|+++.+-+. .+-|--|=.+|..|...+.-+=++-.-+..++ |-+++||.+|+..+.
T Consensus 45 ~~~lCeeL~~q~~~QKaeGfv~F~~Ll~~Fag~L~~~L~v~eti~Al~~QgLf~pLM~ef~~~ik 109 (112)
T d1seda_ 45 VMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELMEVFIDIMK 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHSCTTSCHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999987452139999999975356558999999999985672899999999987
No 7
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=6.35 E-value=52 Score=7.82 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHCCCC---------CHHHHHHHHHHHHCCC
Q ss_conf 999999855421887---------8989999999984029
Q 000708 386 QAFLKCLHIYSNGII---------KRNDLQNLVTDLLGKY 416 (1340)
Q Consensus 386 ~EFLKcLNLYsQeII---------sr~ELv~lV~~lLGk~ 416 (1340)
+.|=++|+|||.++| .+.+..+-+..||.++
T Consensus 18 ~~ld~Li~LFSdd~~i~anG~~~~G~~ai~sFf~~FF~~N 57 (118)
T d3er7a1 18 KAFDDLISLFSDEITFVLNGQEQHGIDAWKQFVRMVFTAN 57 (118)
T ss_dssp HHHHHHHHTEEEEEEEEETTEEEESHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999871667199966850568289999999998615
No 8
>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}
Probab=3.99 E-value=93 Score=6.07 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q ss_conf 488999999985
Q 000708 382 SDDYQAFLKCLH 393 (1340)
Q Consensus 382 ~e~Y~EFLKcLN 393 (1340)
...+..||.+|.
T Consensus 15 Hrlle~fL~~lg 26 (74)
T d2ev0a2 15 HELLEQFLRIIG 26 (74)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999929
No 9
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.94 E-value=95 Score=6.02 Aligned_cols=55 Identities=15% Similarity=0.269 Sum_probs=25.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99999998707896899999999987542157---------68999999999420294699998
Q 000708 167 TFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK---------DINEVYSEVASLFEDHADLLEEF 221 (1340)
Q Consensus 167 ~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~---------si~eV~~~Va~LF~ghPDLL~eF 221 (1340)
..|.+|+.+...+|+.|..+++.+...-.+.. ....-+..+..|+..+..||..+
T Consensus 20 ~~v~~V~~~~~~~~~~~~~~l~~~~~l~~~a~~~l~~~~~~~~~~d~~~lg~lm~~~~~lL~~l 83 (169)
T d1kvka2 20 ALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNAL 83 (169)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999859688999998875999999997642654301433999999999958888741
No 10
>d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}
Probab=3.67 E-value=1e+02 Score=5.76 Aligned_cols=47 Identities=19% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHH-----HHHHHHH
Q ss_conf 999999999998707896899999999987542157689999999994202946-----9999812
Q 000708 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHAD-----LLEEFTR 223 (1340)
Q Consensus 163 ~~Ai~FVnKIK~RF~~dPevYk~FLeIL~~yk~e~~si~eV~~~Va~LF~ghPD-----LL~eF~~ 223 (1340)
...-+|++.|+.|+.++|+ |+...+ +|...+..+|..||+ +++-+..
T Consensus 2 ~~~~~~~~~v~~rnp~Epe----F~QaV~----------Ev~~sl~~~i~~~p~y~~~~i~e~l~~ 53 (194)
T d1bgva2 2 KYVDRVIAEVEKKYADEPE----FVQTVE----------EVLSSLGPVVDAHPEYEEVALLERMVI 53 (194)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHHHH----------HHHHTTHHHHHTCHHHHHTTHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCCHH----HHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHCC
T ss_conf 3599999999961889819----999999----------999988999976977778889988707
Done!