Query 000709
Match_columns 1339
No_of_seqs 808 out of 4072
Neff 7.0
Searched_HMMs 46136
Date Mon Apr 1 22:21:02 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0276 Vesicle coat complex C 100.0 1E-116 3E-121 1009.0 55.6 768 4-1145 6-781 (794)
2 KOG0292 Vesicle coat complex C 100.0 7E-106 2E-110 945.3 64.8 767 4-1183 2-809 (1202)
3 PF04053 Coatomer_WDAD: Coatom 100.0 4.4E-71 9.5E-76 659.9 32.2 384 482-1126 36-443 (443)
4 KOG0271 Notchless-like WD40 re 100.0 1.4E-39 3E-44 358.0 27.7 327 5-399 109-479 (480)
5 KOG0271 Notchless-like WD40 re 100.0 1.8E-34 3.8E-39 317.9 24.2 286 4-338 150-478 (480)
6 KOG0286 G-protein beta subunit 100.0 1.2E-32 2.5E-37 295.8 32.3 287 4-399 48-343 (343)
7 KOG0272 U4/U6 small nuclear ri 100.0 4.4E-33 9.5E-38 311.3 24.4 278 9-339 173-458 (459)
8 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.4E-34 301.9 51.3 308 4-402 44-398 (1202)
9 KOG0318 WD40 repeat stress pro 100.0 1.2E-28 2.6E-33 281.5 52.6 436 4-536 52-507 (603)
10 KOG0291 WD40-repeat-containing 100.0 1.2E-29 2.7E-34 298.8 42.5 434 3-514 137-617 (893)
11 KOG0276 Vesicle coat complex C 100.0 3.7E-28 8E-33 281.1 41.2 248 4-341 48-298 (794)
12 KOG0319 WD40-repeat-containing 100.0 1E-29 2.2E-34 300.0 28.4 353 4-399 97-617 (775)
13 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-30 2.5E-35 292.0 19.0 243 4-294 210-458 (459)
14 KOG0645 WD40 repeat protein [G 100.0 8.8E-29 1.9E-33 263.9 31.5 298 3-400 6-310 (312)
15 KOG0295 WD40 repeat-containing 100.0 9.6E-30 2.1E-34 280.2 24.7 289 4-400 101-405 (406)
16 KOG0279 G protein beta subunit 100.0 4E-28 8.7E-33 259.9 32.1 302 2-401 6-313 (315)
17 KOG0285 Pleiotropic regulator 100.0 2.8E-28 6.1E-33 267.2 26.6 294 4-402 144-440 (460)
18 KOG0273 Beta-transducin family 100.0 1.7E-27 3.6E-32 269.5 31.8 325 5-401 173-523 (524)
19 KOG0319 WD40-repeat-containing 100.0 2.3E-27 5E-32 280.2 34.3 364 11-410 62-544 (775)
20 KOG0315 G-protein beta subunit 100.0 1.8E-27 4E-32 250.8 29.7 290 25-377 12-308 (311)
21 KOG0291 WD40-repeat-containing 100.0 1E-26 2.3E-31 274.2 39.3 347 5-406 259-617 (893)
22 KOG0284 Polyadenylation factor 100.0 1.2E-28 2.5E-33 274.7 19.9 277 11-399 96-378 (464)
23 KOG0263 Transcription initiati 100.0 2.2E-28 4.9E-33 292.3 23.5 318 6-388 373-703 (707)
24 KOG0296 Angio-associated migra 100.0 5.1E-27 1.1E-31 259.0 30.8 335 3-400 56-397 (399)
25 KOG0318 WD40 repeat stress pro 100.0 6.2E-25 1.4E-29 251.3 45.8 436 5-541 97-553 (603)
26 KOG0315 G-protein beta subunit 100.0 4.3E-27 9.3E-32 248.0 25.9 273 93-406 18-293 (311)
27 cd00200 WD40 WD40 domain, foun 100.0 5.1E-26 1.1E-30 253.1 36.0 284 4-399 2-289 (289)
28 KOG0279 G protein beta subunit 100.0 5.8E-27 1.3E-31 251.0 26.3 251 4-341 56-313 (315)
29 KOG0281 Beta-TrCP (transducin 100.0 4E-28 8.8E-33 264.4 16.5 277 10-343 196-479 (499)
30 KOG0266 WD40 repeat-containing 99.9 9.9E-26 2.1E-30 275.5 32.6 288 4-401 151-454 (456)
31 KOG0265 U5 snRNP-specific prot 99.9 1.6E-25 3.4E-30 242.1 27.1 285 4-338 40-333 (338)
32 KOG0263 Transcription initiati 99.9 6.4E-26 1.4E-30 271.4 24.0 208 4-299 444-652 (707)
33 PLN00181 protein SPA1-RELATED; 99.9 1.1E-24 2.4E-29 284.4 37.0 305 6-400 478-792 (793)
34 KOG0306 WD40-repeat-containing 99.9 3E-24 6.6E-29 253.5 35.4 357 4-403 142-624 (888)
35 KOG0273 Beta-transducin family 99.9 4.8E-25 1E-29 249.7 26.9 276 12-341 236-523 (524)
36 KOG0281 Beta-TrCP (transducin 99.9 3.6E-26 7.8E-31 249.2 16.6 263 93-407 215-483 (499)
37 KOG0282 mRNA splicing factor [ 99.9 6.2E-26 1.3E-30 258.1 18.8 286 4-339 207-503 (503)
38 KOG0286 G-protein beta subunit 99.9 2E-24 4.4E-29 232.6 28.8 243 114-401 50-303 (343)
39 KOG0295 WD40 repeat-containing 99.9 1.7E-25 3.8E-30 246.8 19.7 249 4-295 143-405 (406)
40 KOG0316 Conserved WD40 repeat- 99.9 2.9E-24 6.2E-29 225.0 27.4 282 2-339 8-297 (307)
41 KOG0293 WD40 repeat-containing 99.9 6.5E-25 1.4E-29 244.5 22.8 290 4-401 217-513 (519)
42 KOG0275 Conserved WD40 repeat- 99.9 2.4E-25 5.1E-30 240.6 17.7 294 9-399 211-507 (508)
43 KOG0313 Microtubule binding pr 99.9 1.9E-24 4.2E-29 239.6 24.8 284 9-341 103-416 (423)
44 KOG0306 WD40-repeat-containing 99.9 6.1E-24 1.3E-28 251.0 28.3 283 5-342 367-665 (888)
45 KOG0284 Polyadenylation factor 99.9 2.3E-25 5.1E-30 248.4 15.3 243 120-406 96-342 (464)
46 KOG0285 Pleiotropic regulator 99.9 4.4E-24 9.6E-29 234.4 24.5 247 114-407 146-395 (460)
47 KOG2048 WD40 repeat protein [G 99.9 1E-20 2.2E-25 222.9 46.2 453 4-537 18-539 (691)
48 KOG0266 WD40 repeat-containing 99.9 8.6E-23 1.9E-27 249.8 29.6 251 115-407 154-415 (456)
49 KOG0265 U5 snRNP-specific prot 99.9 4.9E-23 1.1E-27 222.9 23.8 256 117-410 44-305 (338)
50 KOG0296 Angio-associated migra 99.9 1.5E-22 3.3E-27 223.9 27.5 287 4-341 99-398 (399)
51 PLN00181 protein SPA1-RELATED; 99.9 7.3E-22 1.6E-26 258.0 38.2 273 93-401 456-738 (793)
52 KOG0293 WD40 repeat-containing 99.9 2.1E-23 4.6E-28 232.5 18.9 250 4-297 262-514 (519)
53 KOG0645 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 209.0 32.0 238 114-399 9-259 (312)
54 KOG0274 Cdc4 and related F-box 99.9 2.8E-22 6.1E-27 245.6 28.0 277 5-344 201-485 (537)
55 KOG0313 Microtubule binding pr 99.9 4.3E-22 9.3E-27 221.1 24.2 262 93-401 123-418 (423)
56 cd00200 WD40 WD40 domain, foun 99.9 4.8E-21 1E-25 213.1 31.6 242 4-339 44-289 (289)
57 KOG2106 Uncharacterized conser 99.9 3.2E-20 6.9E-25 211.6 38.1 329 4-399 97-475 (626)
58 KOG0640 mRNA cleavage stimulat 99.9 6.3E-22 1.4E-26 214.0 22.6 312 5-400 106-425 (430)
59 KOG0282 mRNA splicing factor [ 99.9 1.8E-22 3.8E-27 230.1 19.0 247 115-399 210-503 (503)
60 KOG0283 WD40 repeat-containing 99.9 5.4E-22 1.2E-26 239.9 24.1 307 4-342 259-577 (712)
61 KOG0641 WD40 repeat protein [G 99.9 9E-21 1.9E-25 197.1 29.7 310 9-400 30-348 (350)
62 KOG0274 Cdc4 and related F-box 99.9 7.2E-22 1.6E-26 242.0 25.6 245 4-304 241-490 (537)
63 KOG0277 Peroxisomal targeting 99.9 9.7E-22 2.1E-26 208.4 21.6 268 93-400 36-308 (311)
64 KOG0643 Translation initiation 99.9 2.3E-21 5.1E-26 206.7 24.1 287 4-337 3-311 (327)
65 KOG0278 Serine/threonine kinas 99.9 8.2E-22 1.8E-26 208.1 19.6 283 5-343 8-299 (334)
66 KOG0973 Histone transcription 99.9 1.9E-21 4.1E-26 240.1 25.8 305 7-402 8-356 (942)
67 KOG0772 Uncharacterized conser 99.9 1.9E-21 4.2E-26 221.9 23.6 302 5-402 161-489 (641)
68 KOG0310 Conserved WD40 repeat- 99.9 3.5E-21 7.5E-26 220.1 25.4 273 11-337 26-303 (487)
69 KOG0301 Phospholipase A2-activ 99.9 3.2E-21 6.8E-26 227.3 25.7 278 4-402 7-289 (745)
70 KOG0300 WD40 repeat-containing 99.9 2.1E-21 4.6E-26 209.9 20.9 326 4-401 141-476 (481)
71 KOG1539 WD repeat protein [Gen 99.9 7E-20 1.5E-24 219.4 35.7 333 3-402 194-607 (910)
72 KOG0275 Conserved WD40 repeat- 99.9 4.9E-22 1.1E-26 215.1 15.8 243 120-401 213-467 (508)
73 KOG2096 WD40 repeat protein [G 99.9 1.3E-20 2.9E-25 204.6 25.1 298 3-393 78-396 (420)
74 KOG1407 WD40 repeat protein [F 99.9 1.2E-20 2.6E-25 200.9 23.3 270 5-330 14-288 (313)
75 KOG1408 WD40 repeat protein [F 99.9 1.2E-19 2.7E-24 212.5 33.6 259 124-409 328-634 (1080)
76 KOG0316 Conserved WD40 repeat- 99.9 1.2E-20 2.5E-25 198.1 22.1 245 119-409 16-265 (307)
77 PTZ00421 coronin; Provisional 99.9 8.3E-20 1.8E-24 223.6 31.1 236 6-325 70-314 (493)
78 KOG1063 RNA polymerase II elon 99.9 2.9E-20 6.3E-25 219.0 25.7 365 3-402 183-649 (764)
79 KOG0268 Sof1-like rRNA process 99.9 2.2E-21 4.8E-26 214.1 15.3 282 4-402 59-346 (433)
80 PTZ00420 coronin; Provisional 99.9 2.2E-19 4.8E-24 220.9 33.5 242 4-326 67-318 (568)
81 KOG3617 WD40 and TPR repeat-co 99.9 1.5E-19 3.3E-24 214.3 30.5 290 800-1160 680-1033(1416)
82 KOG0308 Conserved WD40 repeat- 99.9 1.8E-20 3.9E-25 219.4 21.8 244 9-298 19-287 (735)
83 KOG0305 Anaphase promoting com 99.9 7.5E-20 1.6E-24 217.1 27.3 238 120-403 217-463 (484)
84 KOG0288 WD40 repeat protein Ti 99.9 7E-21 1.5E-25 213.3 16.7 281 5-338 169-458 (459)
85 PTZ00421 coronin; Provisional 99.9 3E-19 6.5E-24 218.7 32.4 256 10-343 19-292 (493)
86 KOG1446 Histone H3 (Lys4) meth 99.8 1.4E-18 3E-23 190.7 31.4 286 4-341 7-303 (311)
87 KOG0289 mRNA splicing factor [ 99.8 2.4E-19 5.1E-24 201.9 24.8 274 12-336 220-499 (506)
88 KOG1539 WD repeat protein [Gen 99.8 7.4E-18 1.6E-22 202.3 38.0 442 12-537 160-638 (910)
89 KOG0299 U3 snoRNP-associated p 99.8 4.6E-19 1E-23 201.5 25.5 305 4-393 135-449 (479)
90 KOG1063 RNA polymerase II elon 99.8 5.8E-18 1.3E-22 199.8 35.1 350 4-401 47-437 (764)
91 KOG0277 Peroxisomal targeting 99.8 1.7E-19 3.7E-24 191.5 19.8 279 15-339 12-307 (311)
92 KOG0308 Conserved WD40 repeat- 99.8 1.1E-19 2.3E-24 213.0 19.9 270 93-401 45-327 (735)
93 KOG0640 mRNA cleavage stimulat 99.8 5.8E-20 1.3E-24 198.8 15.6 255 4-340 165-425 (430)
94 KOG0310 Conserved WD40 repeat- 99.8 5.4E-19 1.2E-23 202.4 23.7 253 94-395 47-304 (487)
95 KOG1332 Vesicle coat complex C 99.8 1.6E-19 3.6E-24 190.7 17.9 263 1-341 1-286 (299)
96 KOG1524 WD40 repeat-containing 99.8 4E-17 8.7E-22 187.2 38.4 205 135-395 77-281 (737)
97 KOG0299 U3 snoRNP-associated p 99.8 3.2E-19 7E-24 202.7 21.3 255 116-402 138-411 (479)
98 KOG0264 Nucleosome remodeling 99.8 3.4E-19 7.3E-24 203.0 21.4 262 119-402 123-405 (422)
99 KOG0643 Translation initiation 99.8 9.6E-19 2.1E-23 186.9 23.2 263 3-296 44-317 (327)
100 KOG0305 Anaphase promoting com 99.8 9.9E-19 2.1E-23 207.6 25.1 238 11-342 217-462 (484)
101 KOG0973 Histone transcription 99.8 1.5E-18 3.2E-23 214.8 27.3 253 113-401 6-312 (942)
102 KOG0278 Serine/threonine kinas 99.8 1.2E-19 2.6E-24 191.8 14.3 248 4-299 52-300 (334)
103 PTZ00420 coronin; Provisional 99.8 1.1E-17 2.4E-22 206.1 33.8 222 94-343 53-295 (568)
104 KOG0307 Vesicle coat complex C 99.8 5.1E-17 1.1E-21 201.9 38.6 212 164-408 64-291 (1049)
105 KOG2055 WD40 repeat protein [G 99.8 2E-18 4.3E-23 196.1 23.7 289 11-401 213-512 (514)
106 KOG0647 mRNA export protein (c 99.8 2.1E-18 4.5E-23 187.3 22.4 273 9-334 25-315 (347)
107 KOG0639 Transducin-like enhanc 99.8 1.2E-18 2.6E-23 198.2 21.4 279 8-394 416-698 (705)
108 KOG0650 WD40 repeat nucleolar 99.8 7.6E-19 1.7E-23 203.9 19.9 306 5-336 394-728 (733)
109 KOG0283 WD40 repeat-containing 99.8 2.4E-18 5.1E-23 208.6 25.0 247 118-403 265-578 (712)
110 KOG1407 WD40 repeat protein [F 99.8 3.6E-18 7.9E-23 182.2 23.4 233 6-287 59-293 (313)
111 KOG1332 Vesicle coat complex C 99.8 1.2E-18 2.6E-23 184.2 18.7 254 120-401 11-286 (299)
112 KOG0294 WD40 repeat-containing 99.8 4.3E-18 9.3E-23 185.8 23.2 244 3-298 35-283 (362)
113 KOG0264 Nucleosome remodeling 99.8 2.7E-18 5.9E-23 195.7 21.7 262 4-296 117-404 (422)
114 KOG2048 WD40 repeat protein [G 99.8 2E-15 4.3E-20 178.8 46.2 266 93-395 45-314 (691)
115 KOG1408 WD40 repeat protein [F 99.8 1E-17 2.2E-22 196.6 26.1 347 14-402 327-714 (1080)
116 KOG0288 WD40 repeat protein Ti 99.8 1.1E-18 2.4E-23 195.9 17.0 260 93-398 195-458 (459)
117 KOG0289 mRNA splicing factor [ 99.8 5.2E-18 1.1E-22 191.2 22.3 249 4-295 254-505 (506)
118 KOG0647 mRNA export protein (c 99.8 2.1E-17 4.6E-22 179.6 26.2 269 119-428 26-307 (347)
119 KOG1036 Mitotic spindle checkp 99.8 1.1E-17 2.4E-22 182.7 24.1 269 10-332 12-292 (323)
120 KOG0300 WD40 repeat-containing 99.8 1E-17 2.3E-22 181.6 21.4 223 136-403 127-388 (481)
121 KOG0641 WD40 repeat protein [G 99.8 1.1E-16 2.3E-21 167.0 27.4 253 3-296 81-349 (350)
122 KOG0269 WD40 repeat-containing 99.8 1.7E-18 3.7E-23 206.4 15.8 238 122-395 89-335 (839)
123 KOG0646 WD40 repeat protein [G 99.8 8.3E-18 1.8E-22 191.8 20.6 290 93-410 16-316 (476)
124 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.6E-16 1.4E-20 176.6 35.0 270 23-343 1-281 (300)
125 KOG1036 Mitotic spindle checkp 99.8 1.2E-16 2.6E-21 174.6 26.2 245 120-408 13-269 (323)
126 KOG4328 WD40 protein [Function 99.8 4.1E-17 8.8E-22 185.4 22.8 303 4-399 179-493 (498)
127 KOG0301 Phospholipase A2-activ 99.8 2.1E-17 4.6E-22 195.3 21.3 235 4-341 50-288 (745)
128 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 6.3E-16 1.4E-20 176.8 32.3 264 4-324 24-300 (300)
129 KOG1274 WD40 repeat protein [G 99.8 1.2E-16 2.7E-21 194.0 27.2 269 8-331 10-287 (933)
130 KOG0269 WD40 repeat-containing 99.8 4E-18 8.6E-23 203.3 13.8 197 119-337 132-334 (839)
131 KOG0267 Microtubule severing p 99.7 2.1E-18 4.5E-23 204.1 10.5 209 94-334 49-258 (825)
132 KOG1538 Uncharacterized conser 99.7 2.7E-14 5.9E-19 167.0 43.6 278 5-341 8-293 (1081)
133 KOG0294 WD40 repeat-containing 99.7 8.6E-17 1.9E-21 175.7 21.5 218 157-403 36-283 (362)
134 KOG1538 Uncharacterized conser 99.7 1.6E-14 3.4E-19 169.0 41.2 246 4-297 46-294 (1081)
135 KOG0646 WD40 repeat protein [G 99.7 1.2E-16 2.6E-21 182.4 22.9 270 29-343 13-309 (476)
136 KOG2445 Nuclear pore complex c 99.7 8.6E-16 1.9E-20 167.5 26.2 270 119-401 12-318 (361)
137 KOG4283 Transcription-coupled 99.7 3.4E-16 7.3E-21 169.1 22.8 309 6-400 38-364 (397)
138 KOG2106 Uncharacterized conser 99.7 2.7E-15 6E-20 171.8 31.2 353 4-400 238-625 (626)
139 KOG0772 Uncharacterized conser 99.7 8.3E-17 1.8E-21 184.4 18.7 249 113-390 160-429 (641)
140 KOG0302 Ribosome Assembly prot 99.7 1.2E-16 2.6E-21 177.8 18.2 223 156-394 203-433 (440)
141 KOG0267 Microtubule severing p 99.7 1.1E-17 2.5E-22 198.0 8.4 245 94-393 13-261 (825)
142 KOG1446 Histone H3 (Lys4) meth 99.7 4.3E-15 9.3E-20 163.5 27.4 245 3-296 48-303 (311)
143 KOG2919 Guanine nucleotide-bin 99.7 2.9E-15 6.4E-20 163.9 23.8 287 14-341 52-367 (406)
144 KOG0268 Sof1-like rRNA process 99.7 2.8E-16 6E-21 174.1 15.9 244 4-300 102-349 (433)
145 KOG2445 Nuclear pore complex c 99.7 2.4E-15 5.1E-20 164.1 22.8 264 8-341 10-318 (361)
146 KOG2096 WD40 repeat protein [G 99.7 5.7E-15 1.2E-19 161.3 25.3 225 97-342 63-309 (420)
147 KOG4378 Nuclear protein COP1 [ 99.7 2.2E-15 4.7E-20 171.9 22.9 290 29-380 8-304 (673)
148 KOG0639 Transducin-like enhanc 99.7 1E-15 2.2E-20 174.6 20.2 239 119-399 418-661 (705)
149 KOG1007 WD repeat protein TSSC 99.7 5.7E-15 1.2E-19 159.6 24.3 279 93-395 38-356 (370)
150 KOG0321 WD40 repeat-containing 99.7 2.5E-15 5.5E-20 176.4 23.0 285 87-401 66-391 (720)
151 KOG1274 WD40 repeat protein [G 99.7 7.9E-15 1.7E-19 178.6 27.2 244 120-402 13-263 (933)
152 KOG1034 Transcriptional repres 99.7 6.1E-15 1.3E-19 162.1 22.8 241 132-400 104-382 (385)
153 KOG0321 WD40 repeat-containing 99.7 3E-15 6.5E-20 175.8 21.1 276 4-343 93-393 (720)
154 KOG0302 Ribosome Assembly prot 99.7 2.4E-15 5.1E-20 167.6 18.1 210 161-402 148-379 (440)
155 KOG0650 WD40 repeat nucleolar 99.7 6.8E-15 1.5E-19 171.4 22.3 291 51-398 397-732 (733)
156 COG2319 FOG: WD40 repeat [Gene 99.7 5.6E-13 1.2E-17 155.5 38.8 326 6-402 60-401 (466)
157 KOG4283 Transcription-coupled 99.7 1.8E-14 4E-19 155.9 23.9 212 119-344 42-279 (397)
158 KOG1273 WD40 repeat protein [G 99.7 1.3E-14 2.8E-19 158.5 22.8 284 14-342 26-323 (405)
159 KOG4378 Nuclear protein COP1 [ 99.6 4.4E-15 9.6E-20 169.4 19.2 269 94-405 11-284 (673)
160 KOG1517 Guanine nucleotide bin 99.6 1.9E-14 4.2E-19 176.0 25.4 298 12-401 1065-1381(1387)
161 KOG1445 Tumor-specific antigen 99.6 1.1E-13 2.3E-18 161.5 29.4 151 264-434 628-785 (1012)
162 KOG0270 WD40 repeat-containing 99.6 7.2E-15 1.6E-19 167.1 19.4 236 23-302 192-455 (463)
163 KOG1273 WD40 repeat protein [G 99.6 3E-14 6.5E-19 155.6 23.1 280 167-537 26-314 (405)
164 KOG0307 Vesicle coat complex C 99.6 1.6E-15 3.4E-20 188.9 14.1 248 120-401 64-327 (1049)
165 KOG2055 WD40 repeat protein [G 99.6 8.1E-14 1.8E-18 159.0 26.3 237 120-390 213-455 (514)
166 KOG1007 WD repeat protein TSSC 99.6 1.3E-14 2.8E-19 156.9 18.3 202 121-337 124-355 (370)
167 KOG0270 WD40 repeat-containing 99.6 1.2E-14 2.6E-19 165.3 18.6 237 134-406 193-454 (463)
168 KOG1963 WD40 repeat protein [G 99.6 1.9E-12 4.2E-17 158.1 37.4 371 4-401 50-487 (792)
169 KOG4227 WD40 repeat protein [G 99.6 5.3E-14 1.1E-18 156.4 19.6 325 5-404 50-390 (609)
170 KOG2041 WD40 repeat protein [G 99.6 9E-11 2E-15 138.9 45.5 174 942-1145 747-925 (1189)
171 KOG0322 G-protein beta subunit 99.6 2.9E-14 6.3E-19 152.8 15.0 287 5-340 8-322 (323)
172 KOG1034 Transcriptional repres 99.6 1.4E-13 3E-18 151.6 20.5 268 118-404 36-340 (385)
173 KOG1240 Protein kinase contain 99.6 4.3E-13 9.3E-18 167.0 26.7 357 3-398 1040-1430(1431)
174 KOG0303 Actin-binding protein 99.6 2.2E-13 4.7E-18 152.8 21.2 212 156-405 73-298 (472)
175 KOG0290 Conserved WD40 repeat- 99.5 4.2E-13 9.1E-18 145.5 21.5 272 122-429 46-339 (364)
176 KOG4328 WD40 protein [Function 99.5 1.6E-13 3.6E-18 156.5 17.8 262 119-409 185-458 (498)
177 KOG0644 Uncharacterized conser 99.5 2E-14 4.3E-19 172.3 11.0 280 4-343 183-468 (1113)
178 COG2319 FOG: WD40 repeat [Gene 99.5 9.5E-11 2.1E-15 136.7 40.5 329 4-402 101-443 (466)
179 KOG1188 WD40 repeat protein [G 99.5 3.6E-13 7.7E-18 149.2 18.2 246 132-400 83-345 (376)
180 KOG0642 Cell-cycle nuclear pro 99.5 2.7E-13 5.8E-18 158.4 15.6 257 6-303 289-568 (577)
181 KOG1188 WD40 repeat protein [G 99.5 1.2E-12 2.7E-17 145.0 17.6 263 4-296 63-346 (376)
182 KOG0290 Conserved WD40 repeat- 99.5 1.1E-11 2.4E-16 134.7 23.2 230 93-336 119-358 (364)
183 KOG2919 Guanine nucleotide-bin 99.4 1.9E-12 4.2E-17 142.2 16.0 236 12-287 105-361 (406)
184 KOG1334 WD40 repeat protein [G 99.4 8.7E-13 1.9E-17 151.5 13.5 278 4-299 135-469 (559)
185 KOG0649 WD40 repeat protein [G 99.4 5.4E-11 1.2E-15 126.5 25.7 247 12-341 11-274 (325)
186 KOG4497 Uncharacterized conser 99.4 3E-12 6.6E-17 140.6 16.3 352 126-536 14-381 (447)
187 KOG1587 Cytoplasmic dynein int 99.4 2.1E-11 4.6E-16 149.3 24.8 273 94-402 221-517 (555)
188 KOG1963 WD40 repeat protein [G 99.4 4.7E-11 1E-15 146.3 27.1 296 9-342 203-539 (792)
189 KOG0644 Uncharacterized conser 99.4 8.8E-13 1.9E-17 158.4 11.1 221 157-403 183-428 (1113)
190 KOG0649 WD40 repeat protein [G 99.4 3.5E-11 7.6E-16 127.9 20.2 199 122-343 12-237 (325)
191 KOG1009 Chromatin assembly com 99.4 1.5E-11 3.3E-16 139.1 18.0 290 12-394 14-366 (434)
192 KOG1587 Cytoplasmic dynein int 99.4 4.6E-11 9.9E-16 146.5 23.1 251 11-297 242-517 (555)
193 PRK11028 6-phosphogluconolacto 99.3 5.7E-10 1.2E-14 131.4 31.2 277 93-401 10-304 (330)
194 PRK11028 6-phosphogluconolacto 99.3 5.3E-10 1.1E-14 131.7 30.1 276 27-341 6-304 (330)
195 KOG1310 WD40 repeat protein [G 99.3 1.3E-11 2.9E-16 142.8 15.5 220 5-250 44-308 (758)
196 KOG1310 WD40 repeat protein [G 99.3 2.1E-11 4.6E-16 141.2 16.8 183 159-401 45-231 (758)
197 KOG1517 Guanine nucleotide bin 99.3 6.9E-11 1.5E-15 145.5 20.0 248 12-298 1110-1383(1387)
198 KOG0303 Actin-binding protein 99.3 4.5E-11 9.8E-16 134.5 16.7 216 6-299 76-297 (472)
199 KOG1009 Chromatin assembly com 99.3 4.1E-10 8.9E-15 127.7 24.3 165 120-302 13-201 (434)
200 KOG1445 Tumor-specific antigen 99.3 3.4E-11 7.4E-16 140.9 16.0 206 162-401 625-844 (1012)
201 KOG0642 Cell-cycle nuclear pro 99.3 2.5E-11 5.5E-16 142.1 14.6 206 119-343 293-563 (577)
202 KOG1272 WD40-repeat-containing 99.3 1.5E-11 3.2E-16 140.8 11.7 269 14-393 132-402 (545)
203 PRK01742 tolB translocation pr 99.3 2.5E-10 5.5E-15 139.4 21.9 168 125-325 252-426 (429)
204 KOG0771 Prolactin regulatory e 99.2 8.8E-11 1.9E-15 134.1 14.9 197 15-296 148-354 (398)
205 KOG4227 WD40 repeat protein [G 99.2 3.2E-10 7E-15 126.8 18.7 250 119-401 55-322 (609)
206 KOG4497 Uncharacterized conser 99.2 5.6E-10 1.2E-14 123.1 20.0 323 16-401 13-391 (447)
207 PF02239 Cytochrom_D1: Cytochr 99.2 5E-09 1.1E-13 125.0 28.6 298 4-343 29-349 (369)
208 KOG2110 Uncharacterized conser 99.2 3.4E-09 7.4E-14 119.3 24.9 243 9-299 3-251 (391)
209 KOG0322 G-protein beta subunit 99.2 2.7E-10 5.8E-15 122.8 15.2 274 93-400 33-322 (323)
210 PRK01742 tolB translocation pr 99.2 1.2E-09 2.7E-14 133.4 22.2 233 94-380 183-426 (429)
211 KOG0771 Prolactin regulatory e 99.1 5.2E-10 1.1E-14 127.9 15.2 192 124-335 148-346 (398)
212 KOG1523 Actin-related protein 99.1 2.4E-09 5.3E-14 118.4 19.7 203 120-337 10-230 (361)
213 KOG2139 WD40 repeat protein [G 99.1 1.1E-08 2.3E-13 114.7 24.0 195 121-335 141-366 (445)
214 KOG0974 WD-repeat protein WDR6 99.1 1.4E-09 3E-14 135.5 18.9 191 179-402 97-289 (967)
215 KOG1240 Protein kinase contain 99.1 7.2E-09 1.6E-13 130.3 25.0 263 120-402 1048-1335(1431)
216 KOG2111 Uncharacterized conser 99.1 2.9E-08 6.2E-13 110.1 26.8 244 13-298 7-258 (346)
217 KOG1523 Actin-related protein 99.1 4.2E-09 9.2E-14 116.5 20.1 250 4-335 3-270 (361)
218 KOG2394 WD40 protein DMR-N9 [G 99.1 2.5E-09 5.3E-14 124.7 18.4 212 89-324 137-384 (636)
219 KOG2110 Uncharacterized conser 99.1 2E-08 4.3E-13 113.3 24.9 236 122-404 7-251 (391)
220 KOG2394 WD40 protein DMR-N9 [G 99.1 2.5E-09 5.5E-14 124.6 18.3 195 90-300 190-456 (636)
221 KOG2321 WD40 repeat protein [G 99.1 1.9E-08 4.2E-13 118.0 25.4 194 168-398 137-341 (703)
222 KOG1334 WD40 repeat protein [G 99.1 1.9E-09 4.1E-14 124.5 15.5 274 117-406 139-429 (559)
223 PF04762 IKI3: IKI3 family; I 99.1 9.5E-05 2.1E-09 97.8 61.2 231 213-508 210-455 (928)
224 KOG3881 Uncharacterized conser 99.1 7.7E-09 1.7E-13 117.2 19.7 192 93-303 123-327 (412)
225 PRK03629 tolB translocation pr 99.1 3.3E-08 7.2E-13 120.8 26.9 171 124-325 246-428 (429)
226 KOG1409 Uncharacterized conser 99.0 1.7E-08 3.6E-13 112.7 21.2 250 4-298 17-272 (404)
227 KOG1272 WD40-repeat-containing 99.0 6.7E-10 1.5E-14 127.4 8.9 226 123-399 132-360 (545)
228 KOG0974 WD-repeat protein WDR6 99.0 1.1E-08 2.5E-13 127.5 20.1 194 123-343 90-290 (967)
229 PRK04922 tolB translocation pr 99.0 5.1E-08 1.1E-12 119.4 25.5 170 124-324 251-432 (433)
230 KOG3881 Uncharacterized conser 99.0 1.8E-08 3.9E-13 114.3 18.8 211 8-251 102-326 (412)
231 KOG2139 WD40 repeat protein [G 99.0 3.3E-08 7.1E-13 110.9 20.6 195 120-342 98-310 (445)
232 KOG1064 RAVE (regulator of V-A 99.0 3.6E-09 7.9E-14 136.3 13.7 224 7-335 2204-2438(2439)
233 KOG1524 WD40 repeat-containing 99.0 1.3E-08 2.9E-13 118.2 17.1 197 93-337 83-280 (737)
234 KOG2111 Uncharacterized conser 99.0 1.8E-07 3.9E-12 103.9 25.0 181 33-248 75-259 (346)
235 PRK05137 tolB translocation pr 98.9 1.8E-07 3.9E-12 114.7 27.4 204 5-300 195-416 (435)
236 PRK02889 tolB translocation pr 98.9 1.1E-07 2.4E-12 116.2 25.0 172 123-325 242-425 (427)
237 PF08662 eIF2A: Eukaryotic tra 98.9 9E-08 1.9E-12 104.3 20.9 153 124-303 9-185 (194)
238 PRK03629 tolB translocation pr 98.9 1.7E-07 3.8E-12 114.5 25.6 204 95-335 179-395 (429)
239 KOG2041 WD40 repeat protein [G 98.9 5.9E-06 1.3E-10 99.2 35.1 114 264-395 15-140 (1189)
240 PF02239 Cytochrom_D1: Cytochr 98.8 6.8E-07 1.5E-11 106.8 26.7 323 24-409 6-355 (369)
241 PRK04922 tolB translocation pr 98.8 3.5E-07 7.6E-12 112.1 24.1 197 95-329 184-393 (433)
242 KOG1354 Serine/threonine prote 98.8 1.2E-07 2.6E-12 105.8 17.3 268 11-299 25-362 (433)
243 KOG0280 Uncharacterized conser 98.8 2.9E-07 6.3E-12 101.3 19.5 270 94-399 45-331 (339)
244 KOG2321 WD40 repeat protein [G 98.8 4.3E-07 9.2E-12 107.1 20.6 251 120-410 51-311 (703)
245 COG4946 Uncharacterized protei 98.7 0.00022 4.8E-09 83.1 41.3 168 131-329 331-503 (668)
246 KOG4190 Uncharacterized conser 98.7 4.1E-08 8.9E-13 113.9 11.1 287 2-336 726-1029(1034)
247 TIGR02800 propeller_TolB tol-p 98.7 1.9E-06 4E-11 104.9 26.1 150 123-296 236-397 (417)
248 KOG1354 Serine/threonine prote 98.7 1.1E-07 2.5E-12 106.0 13.7 269 120-400 25-358 (433)
249 KOG4547 WD40 repeat-containing 98.7 4.1E-07 8.8E-12 108.4 19.1 212 20-297 2-221 (541)
250 KOG0280 Uncharacterized conser 98.7 6E-07 1.3E-11 98.9 18.0 161 123-299 124-287 (339)
251 PRK05137 tolB translocation pr 98.7 3.6E-06 7.8E-11 103.3 27.3 155 146-330 186-349 (435)
252 COG2706 3-carboxymuconate cycl 98.7 1.7E-05 3.6E-10 90.5 29.8 224 94-335 15-264 (346)
253 PRK02889 tolB translocation pr 98.7 1.4E-06 3E-11 106.7 23.2 197 95-329 176-385 (427)
254 PF08662 eIF2A: Eukaryotic tra 98.6 1.3E-06 2.8E-11 95.3 18.8 141 178-341 14-179 (194)
255 PRK04792 tolB translocation pr 98.6 4.6E-06 1E-10 102.6 25.9 170 124-324 265-446 (448)
256 PRK00178 tolB translocation pr 98.6 5.5E-06 1.2E-10 101.5 26.5 172 123-325 245-428 (430)
257 KOG1912 WD40 repeat protein [G 98.6 6.9E-06 1.5E-10 99.8 24.3 347 4-405 48-555 (1062)
258 TIGR02658 TTQ_MADH_Hv methylam 98.6 4.7E-05 1E-09 89.7 29.7 241 19-304 53-338 (352)
259 PF10282 Lactonase: Lactonase, 98.5 0.00014 3E-09 86.6 34.1 256 13-302 38-330 (345)
260 PF10282 Lactonase: Lactonase, 98.5 7.5E-05 1.6E-09 88.9 31.3 252 122-400 38-321 (345)
261 KOG4547 WD40 repeat-containing 98.5 4.2E-06 9.1E-11 100.0 19.8 188 135-342 7-221 (541)
262 TIGR02800 propeller_TolB tol-p 98.5 1.3E-05 2.9E-10 97.4 24.1 198 95-329 170-379 (417)
263 KOG2315 Predicted translation 98.5 7.5E-05 1.6E-09 88.9 28.8 320 12-402 35-391 (566)
264 TIGR03300 assembly_YfgL outer 98.5 3.5E-05 7.5E-10 92.7 26.9 286 22-340 64-376 (377)
265 KOG3914 WD repeat protein WDR4 98.5 1.8E-06 4E-11 98.9 14.1 84 160-252 147-230 (390)
266 PRK00178 tolB translocation pr 98.4 2.7E-05 5.8E-10 95.4 25.3 197 96-329 180-388 (430)
267 PRK01029 tolB translocation pr 98.4 3.1E-05 6.7E-10 94.8 25.0 202 95-329 165-385 (428)
268 KOG2314 Translation initiation 98.4 9.5E-05 2.1E-09 87.5 27.3 104 222-341 217-334 (698)
269 PRK04792 tolB translocation pr 98.4 4.2E-05 9E-10 94.3 24.7 197 96-329 199-407 (448)
270 KOG1064 RAVE (regulator of V-A 98.4 1.1E-06 2.4E-11 114.3 10.7 196 162-410 2206-2407(2439)
271 KOG2695 WD40 repeat protein [G 98.4 1.3E-06 2.8E-11 97.9 9.6 169 136-323 228-401 (425)
272 COG5354 Uncharacterized protei 98.4 0.00018 3.8E-09 84.9 27.1 333 10-402 31-396 (561)
273 PRK01029 tolB translocation pr 98.3 0.00013 2.8E-09 89.4 27.8 197 95-325 211-425 (428)
274 KOG1409 Uncharacterized conser 98.3 6.9E-06 1.5E-10 92.3 14.7 82 156-245 189-270 (404)
275 KOG0309 Conserved WD40 repeat- 98.3 1.8E-06 3.9E-11 104.0 10.4 259 120-402 24-340 (1081)
276 TIGR03300 assembly_YfgL outer 98.3 0.00038 8.3E-09 83.7 30.8 215 93-343 113-340 (377)
277 PLN02919 haloacid dehalogenase 98.3 0.00019 4.1E-09 96.6 30.5 167 123-300 685-892 (1057)
278 COG2706 3-carboxymuconate cycl 98.3 0.0013 2.9E-08 75.4 32.4 183 141-342 15-222 (346)
279 KOG3914 WD repeat protein WDR4 98.3 5E-06 1.1E-10 95.4 12.8 161 123-304 65-231 (390)
280 KOG2315 Predicted translation 98.3 0.00017 3.6E-09 86.0 24.8 261 13-302 75-395 (566)
281 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0016 3.4E-08 77.1 32.2 288 22-343 11-332 (352)
282 KOG1832 HIV-1 Vpr-binding prot 98.2 1.4E-06 2.9E-11 106.4 5.9 205 157-411 1094-1301(1516)
283 KOG3617 WD40 and TPR repeat-co 98.2 0.002 4.3E-08 79.5 31.9 165 927-1143 706-871 (1416)
284 KOG2314 Translation initiation 98.2 0.00036 7.9E-09 82.8 25.0 318 15-391 214-558 (698)
285 KOG1912 WD40 repeat protein [G 98.2 0.00012 2.6E-09 89.5 21.5 161 122-295 17-185 (1062)
286 KOG0309 Conserved WD40 repeat- 98.1 7.9E-06 1.7E-10 98.7 9.9 297 12-343 25-341 (1081)
287 PF00400 WD40: WD domain, G-be 98.1 6.1E-06 1.3E-10 65.1 6.2 36 4-39 4-39 (39)
288 KOG1832 HIV-1 Vpr-binding prot 98.1 3.6E-06 7.8E-11 102.9 6.3 219 4-329 1094-1316(1516)
289 COG5354 Uncharacterized protei 98.1 0.0013 2.8E-08 77.9 26.7 183 120-329 32-237 (561)
290 KOG4532 WD40-like repeat conta 98.1 0.00067 1.5E-08 74.4 22.8 179 135-327 130-315 (344)
291 KOG4714 Nucleoporin [Nuclear s 98.0 6.7E-05 1.5E-09 81.8 13.9 145 180-341 100-252 (319)
292 PLN02919 haloacid dehalogenase 98.0 0.0017 3.6E-08 87.8 30.2 210 122-343 625-890 (1057)
293 KOG4714 Nucleoporin [Nuclear s 98.0 3.6E-05 7.8E-10 83.8 10.7 147 135-294 152-316 (319)
294 PRK11138 outer membrane biogen 97.9 0.0017 3.6E-08 78.9 24.9 265 23-341 120-392 (394)
295 PF08450 SGL: SMP-30/Gluconola 97.9 0.0097 2.1E-07 67.2 29.2 181 124-327 43-238 (246)
296 COG5170 CDC55 Serine/threonine 97.9 0.00015 3.3E-09 80.4 13.7 250 11-295 26-366 (460)
297 KOG2695 WD40 repeat protein [G 97.9 4.5E-05 9.7E-10 85.9 9.2 145 120-273 252-402 (425)
298 KOG4532 WD40-like repeat conta 97.9 0.0011 2.4E-08 72.8 19.3 222 16-273 72-312 (344)
299 KOG2114 Vacuolar assembly/sort 97.8 0.0084 1.8E-07 75.1 28.4 168 884-1126 317-491 (933)
300 PF04762 IKI3: IKI3 family; I 97.8 0.013 2.8E-07 78.0 32.3 247 11-296 120-379 (928)
301 PF13360 PQQ_2: PQQ-like domai 97.8 0.0082 1.8E-07 66.8 26.2 220 31-302 1-236 (238)
302 COG5170 CDC55 Serine/threonine 97.8 0.00011 2.3E-09 81.6 10.4 210 120-343 26-311 (460)
303 PF15492 Nbas_N: Neuroblastoma 97.8 0.0075 1.6E-07 67.6 24.4 226 126-406 3-264 (282)
304 KOG1920 IkappaB kinase complex 97.8 0.00024 5.3E-09 91.1 14.5 166 907-1129 886-1057(1265)
305 PF07433 DUF1513: Protein of u 97.7 0.029 6.2E-07 64.6 28.5 242 12-342 5-284 (305)
306 PRK04043 tolB translocation pr 97.7 0.0088 1.9E-07 73.1 25.6 194 13-246 189-401 (419)
307 KOG1275 PAB-dependent poly(A) 97.6 0.00061 1.3E-08 85.0 14.5 178 132-339 147-340 (1118)
308 PF15492 Nbas_N: Neuroblastoma 97.6 0.014 3E-07 65.5 23.6 177 121-304 44-267 (282)
309 KOG4190 Uncharacterized conser 97.6 0.00012 2.6E-09 85.9 7.6 175 115-306 731-916 (1034)
310 PRK11138 outer membrane biogen 97.6 0.061 1.3E-06 65.3 30.8 278 23-343 69-355 (394)
311 PRK04043 tolB translocation pr 97.6 0.0079 1.7E-07 73.5 22.9 175 122-329 189-382 (419)
312 PF00400 WD40: WD domain, G-be 97.5 0.00022 4.8E-09 56.1 6.3 39 201-243 1-39 (39)
313 KOG2066 Vacuolar assembly/sort 97.5 0.0037 8E-08 77.7 19.1 182 12-245 40-233 (846)
314 COG4946 Uncharacterized protei 97.5 0.14 3E-06 60.7 30.3 345 5-403 72-479 (668)
315 KOG1275 PAB-dependent poly(A) 97.5 0.002 4.3E-08 80.7 16.0 192 180-409 146-350 (1118)
316 PF08450 SGL: SMP-30/Gluconola 97.4 0.058 1.3E-06 60.9 25.9 223 125-387 4-243 (246)
317 PF13360 PQQ_2: PQQ-like domai 97.4 0.022 4.8E-07 63.4 21.7 190 22-250 35-235 (238)
318 KOG2114 Vacuolar assembly/sort 97.3 0.017 3.8E-07 72.4 22.0 204 18-248 30-246 (933)
319 KOG2066 Vacuolar assembly/sort 97.3 0.011 2.3E-07 73.8 19.4 187 121-341 40-233 (846)
320 KOG1920 IkappaB kinase complex 97.3 0.067 1.4E-06 69.8 26.5 115 169-299 200-325 (1265)
321 KOG3621 WD40 repeat-containing 97.3 0.032 6.9E-07 69.0 22.7 113 178-297 42-155 (726)
322 KOG1645 RING-finger-containing 97.3 0.0057 1.2E-07 70.8 15.3 68 4-71 186-255 (463)
323 KOG4649 PQQ (pyrrolo-quinoline 97.3 0.042 9.2E-07 60.6 21.1 267 23-342 63-352 (354)
324 KOG1008 Uncharacterized conser 97.2 0.00014 3E-09 87.6 2.5 214 164-403 56-277 (783)
325 KOG0882 Cyclophilin-related pe 97.2 0.0028 6E-08 74.0 12.1 173 121-306 54-241 (558)
326 PF07433 DUF1513: Protein of u 97.0 0.29 6.3E-06 56.6 26.5 204 123-344 7-250 (305)
327 PF08596 Lgl_C: Lethal giant l 97.0 0.044 9.5E-07 66.3 21.0 277 13-329 3-321 (395)
328 PF11768 DUF3312: Protein of u 97.0 0.14 3.1E-06 62.7 24.6 89 194-296 239-329 (545)
329 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.072 1.6E-06 58.9 18.7 111 129-252 19-130 (354)
330 PRK02888 nitrous-oxide reducta 96.7 0.23 5E-06 62.3 24.0 99 191-297 296-405 (635)
331 PF04053 Coatomer_WDAD: Coatom 96.7 0.0025 5.4E-08 77.9 6.7 295 687-1137 111-426 (443)
332 smart00320 WD40 WD40 repeats. 96.6 0.0039 8.5E-08 46.3 5.1 36 4-39 5-40 (40)
333 PF06977 SdiA-regulated: SdiA- 96.5 0.29 6.4E-06 55.5 20.9 205 120-338 21-245 (248)
334 KOG0882 Cyclophilin-related pe 96.4 0.018 3.9E-07 67.5 10.6 224 161-409 6-239 (558)
335 KOG1645 RING-finger-containing 96.4 0.034 7.3E-07 64.7 12.6 94 193-299 175-269 (463)
336 PF06433 Me-amine-dh_H: Methyl 96.3 1.2 2.6E-05 52.3 25.0 246 16-305 40-329 (342)
337 KOG1008 Uncharacterized conser 96.3 0.0031 6.8E-08 76.5 4.2 198 121-341 57-275 (783)
338 cd00216 PQQ_DH Dehydrogenases 96.3 0.68 1.5E-05 58.0 24.6 104 183-304 303-432 (488)
339 PF00930 DPPIV_N: Dipeptidyl p 96.2 1.2 2.6E-05 53.4 25.8 265 20-329 1-342 (353)
340 PRK02888 nitrous-oxide reducta 96.2 0.19 4E-06 63.1 18.9 189 19-246 200-405 (635)
341 PF11768 DUF3312: Protein of u 96.1 0.059 1.3E-06 65.9 13.5 114 123-247 208-331 (545)
342 cd00216 PQQ_DH Dehydrogenases 96.1 2.3 5E-05 53.3 28.1 110 189-304 173-327 (488)
343 PLN03081 pentatricopeptide (PP 96.1 0.074 1.6E-06 69.6 15.5 69 912-980 270-352 (697)
344 PRK11788 tetratricopeptide rep 96.0 0.11 2.4E-06 62.5 15.5 205 911-1149 117-354 (389)
345 PF00780 CNH: CNH domain; Int 95.9 3.5 7.6E-05 47.1 26.5 230 21-304 5-263 (275)
346 KOG3616 Selective LIM binding 95.8 0.069 1.5E-06 65.6 12.0 216 909-1161 740-975 (1636)
347 KOG3621 WD40 repeat-containing 95.6 0.1 2.2E-06 64.8 12.5 161 120-298 33-199 (726)
348 KOG3616 Selective LIM binding 95.6 0.11 2.4E-06 63.8 12.6 152 943-1133 436-592 (1636)
349 PLN03218 maturation of RBCL 1; 95.4 0.31 6.6E-06 66.1 17.4 227 911-1143 447-714 (1060)
350 PF00930 DPPIV_N: Dipeptidyl p 95.3 1.8 3.9E-05 51.9 22.2 253 11-283 42-344 (353)
351 PLN03081 pentatricopeptide (PP 95.2 0.19 4.1E-06 65.8 14.4 89 1019-1110 291-385 (697)
352 PLN03218 maturation of RBCL 1; 95.2 0.17 3.8E-06 68.4 14.1 171 911-1088 589-786 (1060)
353 PRK11447 cellulose synthase su 95.1 0.73 1.6E-05 64.0 20.4 121 1019-1143 604-741 (1157)
354 PF13429 TPR_15: Tetratricopep 95.1 0.071 1.5E-06 61.4 9.0 168 909-1111 52-240 (280)
355 PF08553 VID27: VID27 cytoplas 95.0 0.32 6.9E-06 63.1 15.1 99 135-245 545-647 (794)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.0 6.3 0.00014 50.0 26.4 28 24-51 121-148 (527)
357 COG0823 TolB Periplasmic compo 94.9 0.62 1.3E-05 57.1 16.8 169 7-207 188-366 (425)
358 smart00320 WD40 WD40 repeats. 94.9 0.08 1.7E-06 38.9 5.9 39 201-243 2-40 (40)
359 PLN03077 Protein ECB2; Provisi 94.9 0.47 1E-05 63.7 17.0 136 912-1084 334-483 (857)
360 PF03178 CPSF_A: CPSF A subuni 94.8 6.7 0.00015 46.2 24.9 189 33-246 2-203 (321)
361 PF14583 Pectate_lyase22: Olig 94.7 11 0.00024 45.2 25.6 178 144-341 170-381 (386)
362 PF05096 Glu_cyclase_2: Glutam 94.7 3.5 7.6E-05 46.9 20.5 160 14-207 47-211 (264)
363 PF06977 SdiA-regulated: SdiA- 94.7 5.9 0.00013 45.1 22.4 199 5-233 15-239 (248)
364 COG3386 Gluconolactonase [Carb 94.5 6.2 0.00013 46.4 22.8 214 18-273 31-264 (307)
365 PLN03077 Protein ECB2; Provisi 94.4 0.77 1.7E-05 61.7 17.5 196 912-1122 435-649 (857)
366 COG3063 PilF Tfp pilus assembl 94.4 0.29 6.3E-06 53.9 10.6 179 913-1149 47-242 (250)
367 PRK09782 bacteriophage N4 rece 94.4 0.23 4.9E-06 66.9 12.0 89 1019-1111 610-703 (987)
368 KOG4441 Proteins containing BT 94.4 2.6 5.5E-05 53.9 20.9 236 21-299 283-549 (571)
369 PF06433 Me-amine-dh_H: Methyl 94.2 3.9 8.5E-05 48.1 20.0 56 192-252 270-327 (342)
370 PF08553 VID27: VID27 cytoplas 94.0 0.81 1.7E-05 59.5 15.4 141 180-336 492-640 (794)
371 TIGR02917 PEP_TPR_lipo putativ 93.9 0.5 1.1E-05 62.5 14.1 165 910-1110 610-795 (899)
372 PRK11788 tetratricopeptide rep 93.9 0.55 1.2E-05 56.4 13.2 87 1020-1110 182-274 (389)
373 PF14783 BBS2_Mid: Ciliary BBS 93.8 2.5 5.3E-05 41.8 14.8 106 167-291 2-109 (111)
374 TIGR02917 PEP_TPR_lipo putativ 93.6 0.57 1.2E-05 61.9 13.9 170 907-1110 28-218 (899)
375 TIGR00990 3a0801s09 mitochondr 93.6 0.62 1.3E-05 60.1 13.7 93 1018-1110 467-567 (615)
376 PF03178 CPSF_A: CPSF A subuni 93.6 3.6 7.8E-05 48.5 19.0 143 133-296 42-202 (321)
377 PRK10747 putative protoheme IX 93.6 1.9 4.2E-05 52.5 17.1 231 905-1148 122-396 (398)
378 KOG1897 Damage-specific DNA bi 93.5 34 0.00074 45.1 27.6 141 181-341 787-940 (1096)
379 COG0823 TolB Periplasmic compo 93.4 4.4 9.5E-05 49.8 19.6 135 95-248 218-361 (425)
380 KOG1897 Damage-specific DNA bi 93.4 36 0.00078 44.9 52.3 203 122-345 406-619 (1096)
381 PF04841 Vps16_N: Vps16, N-ter 93.3 26 0.00056 43.0 27.3 53 164-221 216-268 (410)
382 KOG4640 Anaphase-promoting com 93.3 0.35 7.6E-06 59.6 9.7 95 164-273 20-115 (665)
383 PF14583 Pectate_lyase22: Olig 93.2 24 0.00052 42.5 26.6 147 120-284 35-206 (386)
384 COG3391 Uncharacterized conser 93.2 19 0.00042 43.6 24.8 204 15-251 77-289 (381)
385 PF04841 Vps16_N: Vps16, N-ter 93.1 28 0.00061 42.7 28.1 62 180-249 189-250 (410)
386 TIGR00990 3a0801s09 mitochondr 93.0 0.62 1.3E-05 60.1 12.2 163 914-1111 307-493 (615)
387 PHA02713 hypothetical protein; 93.0 7 0.00015 49.9 21.4 146 131-299 351-536 (557)
388 TIGR02521 type_IV_pilW type IV 92.9 1.6 3.6E-05 47.0 13.9 41 910-950 40-86 (234)
389 KOG2079 Vacuolar assembly/sort 92.8 0.34 7.5E-06 62.7 9.0 103 135-245 101-203 (1206)
390 PF02897 Peptidase_S9_N: Proly 92.6 31 0.00067 42.1 28.1 257 13-300 125-408 (414)
391 KOG2444 WD40 repeat protein [G 92.6 0.25 5.4E-06 54.2 6.4 68 181-250 70-137 (238)
392 PF12894 Apc4_WD40: Anaphase-p 92.0 0.35 7.5E-06 40.3 5.2 35 11-46 11-45 (47)
393 KOG4640 Anaphase-promoting com 91.9 0.54 1.2E-05 58.0 8.9 71 223-303 28-99 (665)
394 PF14783 BBS2_Mid: Ciliary BBS 91.9 3.9 8.5E-05 40.4 13.1 98 128-240 10-109 (111)
395 KOG2079 Vacuolar assembly/sort 91.9 0.46 1E-05 61.7 8.5 105 180-295 98-202 (1206)
396 KOG2076 RNA polymerase III tra 91.7 1.2 2.7E-05 57.2 11.9 30 1019-1048 208-237 (895)
397 KOG0985 Vesicle coat protein c 91.6 0.9 2E-05 58.5 10.5 145 915-1109 1034-1190(1666)
398 KOG2395 Protein involved in va 91.3 1.9 4E-05 52.5 12.1 100 135-245 397-500 (644)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 91.3 8.7 0.00019 46.9 18.2 268 125-416 6-413 (415)
400 PRK11447 cellulose synthase su 91.2 1.6 3.6E-05 60.5 13.8 186 911-1111 505-737 (1157)
401 PF10168 Nup88: Nuclear pore c 90.6 17 0.00037 47.6 21.2 79 120-201 84-181 (717)
402 KOG4499 Ca2+-binding protein R 90.6 8.1 0.00018 42.8 15.1 87 228-324 171-263 (310)
403 TIGR02521 type_IV_pilW type IV 90.5 3.9 8.3E-05 44.1 13.4 146 932-1110 34-194 (234)
404 COG3204 Uncharacterized protei 90.5 31 0.00067 39.9 20.2 199 120-335 85-304 (316)
405 PRK10370 formate-dependent nit 90.5 1.9 4.1E-05 47.4 10.8 89 1019-1111 74-170 (198)
406 COG3386 Gluconolactonase [Carb 90.4 26 0.00056 41.2 20.7 201 93-323 45-263 (307)
407 COG5010 TadD Flp pilus assembl 90.4 2 4.3E-05 48.3 10.8 112 963-1109 110-226 (257)
408 PRK10049 pgaA outer membrane p 90.3 3.1 6.6E-05 55.3 14.6 182 909-1110 245-452 (765)
409 PRK10747 putative protoheme IX 90.0 2.1 4.6E-05 52.2 11.8 167 909-1111 92-289 (398)
410 COG3490 Uncharacterized protei 90.0 11 0.00024 42.9 16.0 203 18-243 120-346 (366)
411 COG3391 Uncharacterized conser 90.0 24 0.00052 42.8 20.7 169 13-208 117-292 (381)
412 KOG2003 TPR repeat-containing 89.9 3 6.5E-05 49.5 12.0 113 901-1044 419-550 (840)
413 PRK12370 invasion protein regu 89.9 3 6.6E-05 53.1 13.6 88 1019-1110 339-431 (553)
414 PRK15174 Vi polysaccharide exp 89.9 7.7 0.00017 50.6 17.4 89 1018-1110 284-377 (656)
415 KOG2395 Protein involved in va 89.7 6.5 0.00014 48.1 14.8 138 184-337 349-494 (644)
416 PRK15174 Vi polysaccharide exp 89.7 3.6 7.8E-05 53.6 14.2 233 909-1149 118-388 (656)
417 KOG4441 Proteins containing BT 89.4 16 0.00035 46.8 19.4 143 134-299 286-455 (571)
418 KOG1924 RhoA GTPase effector D 89.4 11 0.00024 48.0 16.7 22 1025-1046 372-393 (1102)
419 PHA02713 hypothetical protein; 89.1 6.8 0.00015 50.0 15.8 91 146-249 436-537 (557)
420 COG3490 Uncharacterized protei 88.8 19 0.00042 41.1 16.8 132 128-285 43-180 (366)
421 PF12234 Rav1p_C: RAVE protein 88.7 5.8 0.00013 50.6 14.4 110 180-295 40-155 (631)
422 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.5 83 0.0018 40.0 31.4 58 192-250 272-338 (527)
423 PF00780 CNH: CNH domain; Int 88.1 53 0.0012 37.4 26.1 152 131-303 6-172 (275)
424 PF05694 SBP56: 56kDa selenium 87.7 15 0.00033 44.6 16.1 212 180-402 86-343 (461)
425 PF08728 CRT10: CRT10; InterP 87.4 8.8 0.00019 49.5 14.8 114 84-199 113-246 (717)
426 KOG0566 Inositol-1,4,5-triphos 87.4 3 6.6E-05 53.9 10.6 74 883-975 714-791 (1080)
427 PF09976 TPR_21: Tetratricopep 87.0 2.8 6.1E-05 43.3 8.7 26 1019-1044 119-144 (145)
428 PF12894 Apc4_WD40: Anaphase-p 86.8 1.5 3.3E-05 36.5 5.2 33 263-299 11-43 (47)
429 COG3823 Glutamine cyclotransfe 86.7 18 0.00039 39.7 14.3 152 22-207 55-212 (262)
430 PF05096 Glu_cyclase_2: Glutam 86.6 20 0.00044 41.0 15.7 121 164-305 44-166 (264)
431 PRK12370 invasion protein regu 86.4 2 4.4E-05 54.7 8.8 89 1019-1111 373-467 (553)
432 PF15390 DUF4613: Domain of un 86.3 6 0.00013 49.1 11.9 70 125-200 117-187 (671)
433 PF14870 PSII_BNR: Photosynthe 86.2 71 0.0015 37.6 20.4 152 164-337 144-298 (302)
434 PRK13616 lipoprotein LpqB; Pro 86.0 23 0.0005 45.5 17.7 151 164-341 349-525 (591)
435 TIGR00540 hemY_coli hemY prote 85.7 5.3 0.00011 48.9 11.6 168 909-1112 92-290 (409)
436 PF02897 Peptidase_S9_N: Proly 85.7 95 0.0021 37.8 26.5 207 94-327 149-383 (414)
437 PRK13616 lipoprotein LpqB; Pro 85.4 59 0.0013 41.9 20.9 72 164-245 447-525 (591)
438 KOG0547 Translocase of outer m 84.9 8.5 0.00018 46.8 12.0 98 1019-1125 463-571 (606)
439 PF12234 Rav1p_C: RAVE protein 84.9 12 0.00027 47.8 14.3 104 226-339 40-154 (631)
440 PRK15179 Vi polysaccharide bio 84.7 2.9 6.3E-05 54.4 9.1 108 909-1047 94-217 (694)
441 COG2956 Predicted N-acetylgluc 84.7 2.6 5.5E-05 48.8 7.4 123 915-1088 155-281 (389)
442 PRK09782 bacteriophage N4 rece 84.1 15 0.00032 50.0 15.5 82 1024-1110 582-668 (987)
443 KOG2444 WD40 repeat protein [G 84.0 3 6.4E-05 46.1 7.3 103 135-246 72-178 (238)
444 PRK14950 DNA polymerase III su 84.0 59 0.0013 41.9 20.3 70 1066-1138 256-336 (585)
445 PRK15359 type III secretion sy 83.0 7 0.00015 40.5 9.4 65 1019-1087 59-123 (144)
446 PF13429 TPR_15: Tetratricopep 82.7 0.69 1.5E-05 53.2 2.0 142 932-1111 11-172 (280)
447 TIGR02552 LcrH_SycD type III s 82.5 3.7 8E-05 41.3 7.1 28 1019-1046 52-79 (135)
448 PF13414 TPR_11: TPR repeat; P 82.4 3.4 7.5E-05 36.4 6.0 30 1018-1047 3-32 (69)
449 PHA03098 kelch-like protein; P 82.3 53 0.0011 41.6 19.0 106 131-248 389-514 (534)
450 KOG1916 Nuclear protein, conta 82.3 0.68 1.5E-05 58.9 1.8 131 164-301 180-328 (1283)
451 KOG0550 Molecular chaperone (D 81.4 5.2 0.00011 47.7 8.4 171 900-1115 168-351 (486)
452 KOG1916 Nuclear protein, conta 81.4 1.5 3.2E-05 56.0 4.2 120 161-296 129-265 (1283)
453 PF08596 Lgl_C: Lethal giant l 81.0 19 0.00041 43.9 13.5 122 166-296 3-173 (395)
454 KOG2076 RNA polymerase III tra 80.7 22 0.00048 46.3 14.1 80 1019-1119 174-262 (895)
455 KOG1126 DNA-binding cell divis 80.6 2.8 6E-05 52.5 6.1 92 1019-1114 490-586 (638)
456 PF07995 GSDH: Glucose / Sorbo 80.5 1.3E+02 0.0029 35.7 24.7 75 263-339 252-331 (331)
457 PF10168 Nup88: Nuclear pore c 80.4 1.6E+02 0.0034 39.0 22.2 34 264-297 147-180 (717)
458 COG4235 Cytochrome c biogenesi 80.2 7.5 0.00016 44.8 9.0 89 1019-1109 157-251 (287)
459 PRK10049 pgaA outer membrane p 80.2 27 0.00058 46.5 15.7 106 909-1046 23-144 (765)
460 PHA03247 large tegument protei 80.2 29 0.00063 50.1 15.7 26 937-963 785-810 (3151)
461 PRK15359 type III secretion sy 79.9 3.2 6.9E-05 43.0 5.6 29 1019-1047 93-121 (144)
462 PF15390 DUF4613: Domain of un 79.9 1.8E+02 0.0039 36.8 23.9 151 85-247 20-188 (671)
463 KOG1840 Kinesin light chain [C 79.8 6.7 0.00015 49.0 9.2 159 911-1122 209-391 (508)
464 PF07719 TPR_2: Tetratricopept 79.7 3.3 7.1E-05 31.0 4.2 26 1019-1044 2-27 (34)
465 PF00515 TPR_1: Tetratricopept 79.6 3.3 7.2E-05 31.2 4.2 27 1019-1045 2-28 (34)
466 PRK15179 Vi polysaccharide bio 79.6 13 0.00029 48.5 12.2 96 919-1045 74-181 (694)
467 PRK07764 DNA polymerase III su 79.0 2.2E+02 0.0049 38.2 23.2 29 1097-1125 334-364 (824)
468 PRK07764 DNA polymerase III su 78.7 55 0.0012 43.8 17.6 73 1068-1141 259-343 (824)
469 PF07995 GSDH: Glucose / Sorbo 78.4 85 0.0018 37.3 17.7 62 216-282 5-67 (331)
470 PF05694 SBP56: 56kDa selenium 78.4 72 0.0016 39.1 16.6 159 129-299 138-345 (461)
471 PRK08691 DNA polymerase III su 78.2 2.3E+02 0.005 37.1 22.5 137 1021-1163 203-357 (709)
472 TIGR03606 non_repeat_PQQ dehyd 78.2 1.3E+02 0.0029 37.3 19.5 59 213-274 30-89 (454)
473 PLN03088 SGT1, suppressor of 78.1 12 0.00025 45.1 10.4 88 1019-1110 3-95 (356)
474 PHA02790 Kelch-like protein; P 78.0 59 0.0013 40.8 17.0 103 131-248 362-473 (480)
475 PF13176 TPR_7: Tetratricopept 77.1 3.5 7.6E-05 31.9 3.7 24 1021-1044 2-25 (36)
476 PF10313 DUF2415: Uncharacteri 77.0 7.9 0.00017 31.7 5.7 31 12-42 1-34 (43)
477 PF13432 TPR_16: Tetratricopep 76.9 4.1 8.8E-05 35.6 4.6 52 963-1045 7-58 (65)
478 PF04733 Coatomer_E: Coatomer 76.8 13 0.00028 43.4 10.0 170 901-1111 35-227 (290)
479 PHA03098 kelch-like protein; P 76.5 69 0.0015 40.6 17.4 146 131-299 342-514 (534)
480 PF09295 ChAPs: ChAPs (Chs5p-A 75.7 3.5 7.7E-05 50.0 5.1 102 911-1044 179-294 (395)
481 PF10602 RPN7: 26S proteasome 75.7 13 0.00027 40.2 8.8 29 1019-1047 37-65 (177)
482 COG3204 Uncharacterized protei 74.6 1.8E+02 0.0038 34.0 19.1 122 164-296 85-210 (316)
483 PF02333 Phytase: Phytase; In 74.1 2.1E+02 0.0045 34.8 19.1 204 178-401 65-290 (381)
484 KOG4499 Ca2+-binding protein R 73.9 1.6E+02 0.0035 33.2 17.3 101 124-232 161-271 (310)
485 PRK14574 hmsH outer membrane p 73.4 54 0.0012 43.9 15.4 144 907-1088 40-202 (822)
486 PRK14959 DNA polymerase III su 72.7 2.8E+02 0.0062 35.9 20.9 20 1068-1087 257-276 (624)
487 PHA02790 Kelch-like protein; P 72.4 70 0.0015 40.1 15.6 144 131-298 318-472 (480)
488 PF14870 PSII_BNR: Photosynthe 71.6 2.1E+02 0.0046 33.6 33.2 154 210-395 142-299 (302)
489 PF14781 BBS2_N: Ciliary BBSom 71.4 1.3E+02 0.0028 31.0 14.8 113 178-300 7-129 (136)
490 KOG1128 Uncharacterized conser 71.1 9.8 0.00021 48.4 7.4 167 905-1110 430-612 (777)
491 TIGR02604 Piru_Ver_Nterm putat 71.0 1.5E+02 0.0032 35.8 17.5 146 165-331 14-200 (367)
492 KOG3060 Uncharacterized conser 70.7 28 0.0006 39.4 9.9 137 907-1075 58-207 (289)
493 PF10647 Gmad1: Lipoprotein Lp 70.6 2E+02 0.0043 32.8 18.2 156 166-339 25-192 (253)
494 KOG1155 Anaphase-promoting com 70.6 18 0.00039 43.9 9.0 30 1019-1048 433-462 (559)
495 cd05804 StaR_like StaR_like; a 70.5 30 0.00065 40.9 11.4 96 1019-1117 187-296 (355)
496 PF13181 TPR_8: Tetratricopept 69.7 8.2 0.00018 28.9 4.2 26 1019-1044 2-27 (34)
497 PF10366 Vps39_1: Vacuolar sor 69.6 21 0.00045 35.3 8.0 90 1061-1167 4-97 (108)
498 PHA03247 large tegument protei 69.2 1.1E+02 0.0024 44.8 16.9 11 1152-1162 1176-1186(3151)
499 cd05804 StaR_like StaR_like; a 69.2 43 0.00092 39.6 12.3 65 1019-1083 149-213 (355)
500 PF07462 MSP1_C: Merozoite sur 69.1 8.8 0.00019 47.1 6.2 18 1069-1086 165-182 (574)
No 1
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-116 Score=1009.01 Aligned_cols=768 Identities=21% Similarity=0.294 Sum_probs=640.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
-++|..|+++|.++.|||..+|++++-.+|.|+|||+++...+++|+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~------------------------------- 54 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS------------------------------- 54 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec-------------------------------
Confidence 3577889999999999999999999999999999999999999888733
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~ 162 (1339)
+-+|++..|-...+ ++++|++|..|++ ++++++ .+..++.
T Consensus 55 ------------------------------------~~PvRa~kfiaRkn-Wiv~GsDD~~IrVfnynt~e--kV~~FeA 95 (794)
T KOG0276|consen 55 ------------------------------------EVPVRAAKFIARKN-WIVTGSDDMQIRVFNYNTGE--KVKTFEA 95 (794)
T ss_pred ------------------------------------ccchhhheeeeccc-eEEEecCCceEEEEecccce--eeEEeec
Confidence 22345555666565 9999999999976 999885 4778999
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t-~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
|.++|+|++.| |..++++++|+|.+|++||++. +.+.+++. ||.++|++++ +.+.|.+.|+|+|.|++|+|
T Consensus 96 H~DyIR~iavH-----Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~--fnPkD~ntFaS~sLDrTVKV 167 (794)
T KOG0276|consen 96 HSDYIRSIAVH-----PTLPYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVA--FNPKDPNTFASASLDRTVKV 167 (794)
T ss_pred cccceeeeeec-----CCCCeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEE--ecCCCccceeeeeccccEEE
Confidence 99999999995 5789999999999999999974 67888887 9999999998 37778999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
|.+.+.. +.+++.||..+|+|++|-+. +|.++|+||++|.+|+|||+++..|+++ +.||..+|+++.
T Consensus 168 Wslgs~~------~nfTl~gHekGVN~Vdyy~~-gdkpylIsgaDD~tiKvWDyQtk~CV~T------LeGHt~Nvs~v~ 234 (794)
T KOG0276|consen 168 WSLGSPH------PNFTLEGHEKGVNCVDYYTG-GDKPYLISGADDLTIKVWDYQTKSCVQT------LEGHTNNVSFVF 234 (794)
T ss_pred EEcCCCC------CceeeeccccCcceEEeccC-CCcceEEecCCCceEEEeecchHHHHHH------hhcccccceEEE
Confidence 9998775 45668999999999999983 5678999999999999999999999888 799999999999
Q ss_pred eCCCCCE-EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000709 322 RAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 322 fspdg~i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriW 398 (1339)
|+|.-.+ ++||+||+ ||+..+-. ...++..... ++||++..+ +...++.|.++|.|. +=
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty~---------------lE~tLn~gle-RvW~I~~~k-~~~~i~vG~Deg~i~-v~ 296 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTYK---------------LEKTLNYGLE-RVWCIAAHK-GDGKIAVGFDEGSVT-VK 296 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCccee---------------hhhhhhcCCc-eEEEEeecC-CCCeEEEeccCCcEE-EE
Confidence 9999885 58999997 89876531 1223333344 899999999 566699999999974 33
Q ss_pred cCCCCCCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhHHHhhcccccccCCC
Q 000709 399 DPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPH 478 (1339)
Q Consensus 399 d~~~~p~i~~~~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~ 478 (1339)
-.++.|.+ +.+....++|...+++...+...-.. ..+...++.+. ...|++.+.--+
T Consensus 297 lgreeP~v------sMd~~gKIiwa~~~ei~~~~~ks~~~---------------~~ev~DgErL~--LsvKeLgs~eiy 353 (794)
T KOG0276|consen 297 LGREEPAV------SMDSNGKIIWAVHSEIQAVNLKSVGA---------------QKEVTDGERLP--LSVKELGSVEIY 353 (794)
T ss_pred ccCCCCce------eecCCccEEEEcCceeeeeeceeccC---------------cccccCCcccc--chhhhccccccc
Confidence 23333333 23334568888888875433321100 00222333331 123334443322
Q ss_pred CCccEEEEcCCCCEEEEEECCCCEEEEEEeCCceeeecCceeEEEeccCCCeEEEEeccCCCCcCCCCCCCCchhHHHHH
Q 000709 479 DSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAA 558 (1339)
Q Consensus 479 e~~s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a 558 (1339)
+ ..+.+||+|||++|| ++|+|+||+...|+++.+|+++.|+|+.+++.|||++++-. +. .+|++|+.
T Consensus 354 P--q~L~hsPNGrfV~Vc--gdGEyiIyTala~RnK~fG~~~eFvw~~dsne~avRes~~~--vk------i~knfke~- 420 (794)
T KOG0276|consen 354 P--QTLAHSPNGRFVVVC--GDGEYIIYTALALRNKAFGSGLEFVWAADSNEFAVRESNGN--VK------IFKNFKEH- 420 (794)
T ss_pred h--HHhccCCCCcEEEEe--cCccEEEEEeeehhhcccccceeEEEcCCCCeEEEEecCCc--eE------EEecceec-
Confidence 2 279999999999887 89999999999999999999999999999999999987532 11 12333443
Q ss_pred HHHHHHHHHHHHHhhccceeeeeeccCCCcceeEeecCCCCCCeeeeeccceeeeEeeccccccccccccccccccCCCC
Q 000709 559 AAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLS 638 (1339)
Q Consensus 559 ~aaa~~~aaa~aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1339)
+++... ...++++||.||||+.+
T Consensus 421 ----------------------------------ksi~~~-~~~e~i~gg~Llg~~ss---------------------- 443 (794)
T KOG0276|consen 421 ----------------------------------KSIRPD-MSAEGIFGGPLLGVRSS---------------------- 443 (794)
T ss_pred ----------------------------------cccccc-cceeeecCCceEEEEeC----------------------
Confidence 455432 34688999999999766
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCcEEEeecccccccccCCCCCceEEECCCccEEEEEeeeEEEEeecCccccc
Q 000709 639 GFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFAYQHYIVISSLCPQYRY 718 (1339)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~v~~~~~~~~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~ 718 (1339)
+++|||||+++++|+||+..++.++|+++|++||+++.+.+||++++.+.-.
T Consensus 444 ----------------------------~~~~fydW~~~~lVrrI~v~~k~v~w~d~g~lVai~~d~Sfyil~~n~d~v~ 495 (794)
T KOG0276|consen 444 ----------------------------DFLCFYDWESGELVRRIEVTSKHVYWSDNGELVAIAGDDSFYILKFNADAVA 495 (794)
T ss_pred ----------------------------CeEEEEEcccceEEEEEeeccceeEEecCCCEEEEEecCceeEEEecHHHHH
Confidence 5799999999999999999999999999999999999999999998643211
Q ss_pred cccccccccccceeeeeeeEEeCCCcceEEeecccccchhhhhhHHHHHHHHHhhhhhhhhccccceehhhccchhhhhh
Q 000709 719 LGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQD 798 (1339)
Q Consensus 719 ~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1339)
..+.+|. ..|++||+.+|..- .+..+.++++.|+|||++||.
T Consensus 496 ------~a~e~g~-------~v~eeGiedAfevL----------------gE~sE~v~tg~WvgD~fiytt--------- 537 (794)
T KOG0276|consen 496 ------NAVEQGI-------EVTEEGIEDAFEVL----------------GEVSESVKTGKWVGDCFIYTT--------- 537 (794)
T ss_pred ------HHHhcCC-------CCcchhHHHHHHHH----------------hhhhhheeeceeeeeEEEEee---------
Confidence 1122221 25778888877652 234567999999999966664
Q ss_pred ccccCCCchhhhhhhcccccCCCCCcccCCCCccccCCCCCCcccccccccceeeecCCceeeEEeccCCCCCCCCcceE
Q 000709 799 RIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLV 878 (1339)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~ 878 (1339)
..||++|++||++.++.|+++ +||
T Consensus 538 -------------------------------------------------s~nrlnY~vgGe~~~v~h~~~-------~my 561 (794)
T KOG0276|consen 538 -------------------------------------------------SNNRLNYLVGGETYTVAHLDR-------IMY 561 (794)
T ss_pred -------------------------------------------------cccceeEEcCCceEEEEEecc-------chh
Confidence 346777999999999999997 999
Q ss_pred EEEE--eCcEEEEEcCCCcEEEEecChhHHHhHHHHhcCCHHHHHHHHHhcCchhhHHHHHHHHhCCcchhhcccccccC
Q 000709 879 VVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISK 956 (1339)
Q Consensus 879 l~g~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~ 956 (1339)
+||| +++++||.||+.+|++|+|.+..++||++++|||++.|.+.+++||+++|.++|+|||++||+|+||++.+| +
T Consensus 562 lLgy~~~~~rvYL~Dke~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D-~ 640 (794)
T KOG0276|consen 562 LLGYVANDNRVYLHDKELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTD-P 640 (794)
T ss_pred heeeeecCCEEEEeecccceEeEeeehHHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccchHhhhhcCCC-h
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred ccEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHH
Q 000709 957 RLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANI 1036 (1339)
Q Consensus 957 ~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~ 1036 (1339)
++|||||+|+|+|++|.++|.+.++ + .||++||++|+..|++.+
T Consensus 641 d~rFelal~lgrl~iA~~la~e~~s------~------------------------------~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 641 DQRFELALKLGRLDIAFDLAVEANS------E------------------------------VKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhhhhhcCcHHHHHHHHHhhcc------h------------------------------HHHHHHHHHHhhcccchh
Confidence 9999999999999999999975322 2 699999999999999999
Q ss_pred HHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-HHcCCHHHHHHHHHHcCCch
Q 000709 1037 AREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-AILGDNALMEKAWQDTGMLA 1115 (1339)
Q Consensus 1037 a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-~~lgd~~~~~~~l~~~~~~~ 1115 (1339)
|.|||+|+ . ||.+|+|||++.|+.+.|.+|++.|+++|++ |.||.| +++||+++|.++|++|+|+|
T Consensus 685 A~EC~~~a---~---------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 685 ASECFLRA---R---------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh---c---------chhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 99999999 7 9999999999999999999999999999999 889999 69999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhhhcC
Q 000709 1116 EAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1339)
Q Consensus 1116 ~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~ 1145 (1339)
||+||||||+|++++++|++||++|.+..+
T Consensus 752 eAal~ArtYlps~vs~iv~~wk~~l~k~~~ 781 (794)
T KOG0276|consen 752 EAALFARTYLPSQVSRIVELWKEDLSKVSE 781 (794)
T ss_pred HHHHHHhhhChHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999995533
No 2
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-106 Score=945.32 Aligned_cols=767 Identities=20% Similarity=0.289 Sum_probs=655.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+..|+..+.+|..++|||..+|++++-++|.|++||++.+.++..|..|
T Consensus 2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeH------------------------------- 50 (1202)
T KOG0292|consen 2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEH------------------------------- 50 (1202)
T ss_pred cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhcc-------------------------------
Confidence 4778999999999999999999999999999999999999988888633
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
+++|+.++|+|+++ ++++|++|..| +|++.+.+ ++.++.+
T Consensus 51 ------------------------------------dGpVRgv~FH~~qp-lFVSGGDDykIkVWnYk~rr--clftL~G 91 (1202)
T KOG0292|consen 51 ------------------------------------DGPVRGVDFHPTQP-LFVSGGDDYKIKVWNYKTRR--CLFTLLG 91 (1202)
T ss_pred ------------------------------------CCccceeeecCCCC-eEEecCCccEEEEEecccce--ehhhhcc
Confidence 55577788899998 99999999999 78998875 4778899
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|.++|+.+.| ++.-+||+++|+|.+||||++.+++++..+. ||.++|+|.. |+|...+++|+|.|.+||||
T Consensus 92 HlDYVRt~~F-----HheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAq---FhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 92 HLDYVRTVFF-----HHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQ---FHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred ccceeEEeec-----cCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeec---cCCccceEEEecccceEEEE
Confidence 9999999999 4678999999999999999999999999998 9999999998 89999999999999999999
Q ss_pred eCCCCC---------------------ccc--eecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 243 SADHGQ---------------------DSR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 243 Dl~tg~---------------------~~~--~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
|+..-+ ... ....++.+.||+.+|++++||| .-++|+||++|+.|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp---TlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP---TLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC---CcceEEecCCcceeeEEEecccc
Confidence 986311 000 2234667899999999999999 68899999999999999999877
Q ss_pred eEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEE
Q 000709 300 ELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMV 376 (1339)
Q Consensus 300 ~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la 376 (1339)
.+.. .++++|.++|+++-|+|... +|+.|+|+. |||+..+ .++++|+..++ +.|+++
T Consensus 240 aWEv----DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---------------t~v~tfrrend-RFW~la 299 (1202)
T KOG0292|consen 240 AWEV----DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---------------TSVQTFRREND-RFWILA 299 (1202)
T ss_pred ceee----hhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---------------cceeeeeccCC-eEEEEE
Confidence 6654 66899999999999999877 568999995 8999876 34778888887 999999
Q ss_pred EecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCccc
Q 000709 377 AHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLK 456 (1339)
Q Consensus 377 ~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~lg~~~~~S~~G~~~ 456 (1339)
.|| ..++++.|++.|+++...+ |++|..+.. +..++|++++.++..+|....... +.+
T Consensus 300 ahP-~lNLfAAgHDsGm~VFkle-RErpa~~v~-------~n~LfYvkd~~i~~~d~~t~~d~~-------v~~------ 357 (1202)
T KOG0292|consen 300 AHP-ELNLFAAGHDSGMIVFKLE-RERPAYAVN-------GNGLFYVKDRFIRSYDLRTQKDTA-------VAS------ 357 (1202)
T ss_pred ecC-CcceeeeecCCceEEEEEc-ccCceEEEc-------CCEEEEEccceEEeeeccccccce-------eEe------
Confidence 999 7899999999999854442 466666543 567899998888877776422211 111
Q ss_pred CCCchhhHHHhhcccccccCCCCCccEEEEcCCCCEEEEEEC-CCCEEEEEEeCCc-------eeeecCceeEEEeccCC
Q 000709 457 GDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWP-DIPYFSVYKVSDW-------SIVDSGSARLLAWDTCR 528 (1339)
Q Consensus 457 ~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylaV~~~-~~g~~~Vy~i~~~-------~~i~~G~~~~~aWs~~~ 528 (1339)
.|..++ .|.++-+++++|...-+.++++ +++.|.+|.+..- +...++.+....| ..+
T Consensus 358 ------------lr~~g~--~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~f-var 422 (1202)
T KOG0292|consen 358 ------------LRRPGT--LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALF-VAR 422 (1202)
T ss_pred ------------ccCCCc--ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEE-EEe
Confidence 121222 2333347999999888877765 8999999998632 3344788899999 589
Q ss_pred CeEEEEeccCCCCcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhhccceeeeeeccCCCcceeEeecCCCCCCeeeeecc
Q 000709 529 DRFAILESALTPRLPIIPKGGSSRKAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGG 608 (1339)
Q Consensus 529 ~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a~aaa~~~aaa~aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg 608 (1339)
|||||++++.. ++.+|.+. |-++|.+..+-....++++|
T Consensus 423 Nrfavl~k~~~------------------------------------~v~ik~l~-----N~vtkkl~~~~~~~~IF~ag 461 (1202)
T KOG0292|consen 423 NRFAVLDKSNE------------------------------------QVVIKNLK-----NKVTKKLLLPESTDDIFYAG 461 (1202)
T ss_pred cceEEEEecCc------------------------------------ceEEeccc-----chhhhcccCcccccceeecc
Confidence 99999987532 34455544 23334444332223445666
Q ss_pred ceeeeEeeccccccccccccccccccCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcEEEeecccccccccC-CCCC
Q 000709 609 ALLGVAYRTSRRISPIAATAISTIQSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGL-LPQP 687 (1339)
Q Consensus 609 ~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~v~~~-~~~~ 687 (1339)
. |-.... .++.+.+||.++.+.++.+ ...+
T Consensus 462 ~--g~lll~-----------------------------------------------~~~~v~lfdvQq~~~~~si~~s~v 492 (1202)
T KOG0292|consen 462 T--GNLLLR-----------------------------------------------SPDSVTLFDVQQKKKVGSIKVSKV 492 (1202)
T ss_pred C--ccEEEE-----------------------------------------------cCCeEEEEEeecceEEEEEecCce
Confidence 4 222111 2478999999999999995 4789
Q ss_pred ceEEECCCccEEEEEeeeEEEEeecCccccccccccccccccceeeeeeeEE-eCCCcceEEeecccccchhhhhhHHHH
Q 000709 688 EWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQLFV-VTPTTIECVFVDAGVAAIDVETMKMKE 766 (1339)
Q Consensus 688 ~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~-~t~~~i~~~~~~~~~~~~~~~~~~~~~ 766 (1339)
++|+||.+++++||.++|+|+|+++++++.|..+|.|+ +|||+|+++++|+ ||.|||||++.+
T Consensus 493 kyvvws~dm~~vAll~Kh~i~i~~kkL~l~~sihEtir-iksgawde~gVfiYtT~nHikYal~~--------------- 556 (1202)
T KOG0292|consen 493 KYVVWSNDMSRVALLSKHTITIADKKLELLCSIHETIR-IKSGAWDEDGVFIYTTLNHIKYALEN--------------- 556 (1202)
T ss_pred eEEEEcCccchhhhcccceEEEEecchhheecchheeE-eeeceeccCceEEEEehhhhhhhhcc---------------
Confidence 99999999999999999999999999999999999999 9999999998877 999999999877
Q ss_pred HHHHHhhhhhhhhccccceehhhccchhhhhhccccCCCchhhhhhhcccccCCCCCcccCCCCccccCCCCCCcccccc
Q 000709 767 EMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEE 846 (1339)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (1339)
T Consensus 557 -------------------------------------------------------------------------------- 556 (1202)
T KOG0292|consen 557 -------------------------------------------------------------------------------- 556 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceeeecCCceeeEEeccCCCCCCCCcceEEEEEeCcEEEEEcCCCcEEEEecChhHHHhHHHHhcCCHHHHHHHHHh
Q 000709 847 RKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR 926 (1339)
Q Consensus 847 ~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l~g~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~ 926 (1339)
|++++|++||. |||++.+++|.+||+||++.+.++.||.++++|+.|+++++|++++.++++
T Consensus 557 -----------GD~GIikTLd~-------~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~n 618 (1202)
T KOG0292|consen 557 -----------GDSGIIKTLDK-------PIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKN 618 (1202)
T ss_pred -----------CCcceEEeccc-------ceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHh
Confidence 55688999997 999999999999999999999999999999999999999999999999988
Q ss_pred ---cCchhhHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccc
Q 000709 927 ---LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTK 1003 (1339)
Q Consensus 927 ---i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1003 (1339)
+|+ .++.||+++||+|.||||+.| +++||+|||+||||++|++.|+.++++
T Consensus 619 s~LvGq----aiIaYLqKkgypeiAL~FVkD-~~tRF~LaLe~gnle~ale~akkldd~--------------------- 672 (1202)
T KOG0292|consen 619 SNLVGQ----AIIAYLQKKGYPEIALHFVKD-ERTRFELALECGNLEVALEAAKKLDDK--------------------- 672 (1202)
T ss_pred cCcccH----HHHHHHHhcCCcceeeeeecC-cchheeeehhcCCHHHHHHHHHhcCcH---------------------
Confidence 777 699999999999999999999 599999999999999999999987765
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHH
Q 000709 1004 KENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLI 1083 (1339)
Q Consensus 1004 ~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~ 1083 (1339)
..|.+||+.||+|||+++||+|||++ + +|++|+|||+++||.++|+||+++|+
T Consensus 673 ---------------d~w~rLge~Al~qgn~~IaEm~yQ~~---k---------nfekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 673 ---------------DVWERLGEEALRQGNHQIAEMCYQRT---K---------NFEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred ---------------HHHHHHHHHHHHhcchHHHHHHHHHh---h---------hhhheeEEEEEeCCHHHHHHHHHHHH
Confidence 69999999999999999999999999 5 77999999999999999999999999
Q ss_pred HcCCChHHHHHH-HHcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHHHHHHHhhhcCCCCcchhhHHHHHHhcc
Q 000709 1084 SLGLGREAAFSA-AILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVDHTPTAKTDAAAAFLASL 1162 (1339)
Q Consensus 1084 ~~~~~~~~af~~-~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~ 1162 (1339)
.+++. ..-|+. +||||+++++++|.+.|++|+||+.|++|| +.+..++..+.+.++..+.|.
T Consensus 726 ~r~D~-~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G---~~~~ae~l~ee~~~~~~~lP~------------- 788 (1202)
T KOG0292|consen 726 IRNDA-TGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHG---LEDQAEKLGEELEKQVPSLPE------------- 788 (1202)
T ss_pred hhhhh-HHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcC---cHHHHHHHHHhhccccCCCCC-------------
Confidence 99999 888987 699999999999999999999999999999 888889999999999999998
Q ss_pred CCCCccccccCCCCCCccccC
Q 000709 1163 EEPKLTSLAEAGKKPPIEILP 1183 (1339)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~~~~ 1183 (1339)
.+|++..|++|.|++|.|=-|
T Consensus 789 ~~~~a~ll~pP~p~~~l~nwP 809 (1202)
T KOG0292|consen 789 VDPNASLLQPPVPIMPLENWP 809 (1202)
T ss_pred CCCcccccCCCCccccccCCc
Confidence 789999999999999999555
No 3
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=100.00 E-value=4.4e-71 Score=659.94 Aligned_cols=384 Identities=24% Similarity=0.369 Sum_probs=300.1
Q ss_pred cEEEEcCCCCEEEEEECCCCEEEEEEeCCceeeecCceeEEEeccCCCeEEEEeccCCCCcCCCCCCCCchhHHHHHHHH
Q 000709 482 SILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSRKAKEAAAAA 561 (1339)
Q Consensus 482 s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i~~G~~~~~aWs~~~~~fAvl~~~~~~~i~~~~k~~~~~k~ke~a~aa 561 (1339)
..++++|+|++++|+ ++|+|.||+...++.+.+|.+.+++|.+ +++||+++++.
T Consensus 36 ~~ls~npngr~v~V~--g~geY~iyt~~~~r~k~~G~g~~~vw~~-~n~yAv~~~~~----------------------- 89 (443)
T PF04053_consen 36 QSLSHNPNGRFVLVC--GDGEYEIYTALAWRNKAFGSGLSFVWSS-RNRYAVLESSS----------------------- 89 (443)
T ss_dssp SEEEE-TTSSEEEEE--ETTEEEEEETTTTEEEEEEE-SEEEE-T-SSEEEEE-TTS-----------------------
T ss_pred eeEEECCCCCEEEEE--cCCEEEEEEccCCcccccCceeEEEEec-CccEEEEECCC-----------------------
Confidence 389999999999885 8999999999999999999999999987 99999998631
Q ss_pred HHHHHHHHHHhhccceee-eeeccCCCcceeEeecCCCCCCeeeeeccceeeeEeeccccccccccccccccccCCCCCC
Q 000709 562 AAAQAAAASAASSATVQA-RILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTIQSMPLSGF 640 (1339)
Q Consensus 562 a~~~aaa~aaa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1339)
++.| +++.+ ...+++..+ ..++.+|||.||++...
T Consensus 90 --------------~I~I~kn~~~-----~~~k~i~~~-~~~~~If~G~LL~~~~~------------------------ 125 (443)
T PF04053_consen 90 --------------TIKIYKNFKN-----EVVKSIKLP-FSVEKIFGGNLLGVKSS------------------------ 125 (443)
T ss_dssp ---------------EEEEETTEE------TT-----S-S-EEEEE-SSSEEEEET------------------------
T ss_pred --------------eEEEEEcCcc-----ccceEEcCC-cccceEEcCcEEEEECC------------------------
Confidence 2333 33321 112344432 45788999999998755
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCcEEEeecccccccccCCCCC-ceEEECCCccEEEEEeeeEEEEeecCcc----
Q 000709 641 GSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQP-EWTAWDQTVEYCAFAYQHYIVISSLCPQ---- 715 (1339)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~v~~~~~~~-~~~~w~~~~~~~a~~~~~~i~i~~~~~~---- 715 (1339)
++++||||++++.|+++...+ ++|+|++++++||++++++|+|++++.+
T Consensus 126 --------------------------~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 126 --------------------------DFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp --------------------------TEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred --------------------------CCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 469999999999999999875 9999999999999999999999999876
Q ss_pred ---------ccccccccccccccceeeeeeeEEeCCCcceEEeecccccchhhhhhHHHHHHHHHhhhhhhhhcccccee
Q 000709 716 ---------YRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELAL 786 (1339)
Q Consensus 716 ---------~~~~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1339)
+..+.++.++ ++||+|+.+.++|||.+||+| ++
T Consensus 180 ~~~~g~e~~f~~~~E~~~~-IkSg~W~~d~fiYtT~~~lkY-l~------------------------------------ 221 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISER-IKSGCWVEDCFIYTTSNHLKY-LV------------------------------------ 221 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S---SEEEEETTEEEEE-TTEEEE-EE------------------------------------
T ss_pred ccccCchhceEEEEEecce-eEEEEEEcCEEEEEcCCeEEE-EE------------------------------------
Confidence 3333333555 778888777666677777777 44
Q ss_pred hhhccchhhhhhccccCCCchhhhhhhcccccCCCCCcccCCCCccccCCCCCCcccccccccceeeecCCceeeEEecc
Q 000709 787 IAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRF 866 (1339)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l 866 (1339)
||++++|+||
T Consensus 222 ----------------------------------------------------------------------~Ge~~~i~~l 231 (443)
T PF04053_consen 222 ----------------------------------------------------------------------NGETGIIAHL 231 (443)
T ss_dssp ----------------------------------------------------------------------TTEEEEEEE-
T ss_pred ----------------------------------------------------------------------cCCcceEEEc
Confidence 4888999999
Q ss_pred CCCCCCCCcceEEEEEeC--cEEEEEcCCCcEEEEecChhHHHhHHHHhcCCHHH------HHHHHHhcCchhhHHHHHH
Q 000709 867 PTEQKRPIGPLVVVGVKD--GVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVS------AVKWASRLGREHHDDLAQF 938 (1339)
Q Consensus 867 ~~~~~~~~~~~~l~g~~~--~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~------a~~~~~~i~~~~~~~~a~f 938 (1339)
|+ |+||+||.. ++|||+||++++.+|+|++++++||++|+|||+++ +.+++++||+++++++|+|
T Consensus 232 d~-------~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~f 304 (443)
T PF04053_consen 232 DK-------PLYLLGYLPKENRLYLIDRDGNVISYELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARF 304 (443)
T ss_dssp SS---------EEEEEETTTTEEEEE-TT--EEEEE--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHH
T ss_pred CC-------ceEEEEEEccCCEEEEEECCCCEEEEEECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHH
Confidence 97 999999955 99999999999999999999999999999999999 4677788999999999999
Q ss_pred HHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhH
Q 000709 939 MLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFA 1018 (1339)
Q Consensus 939 L~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1018 (1339)
|+++||+|+||++++| +++||||||+||+|+.|+++|+.+++ +
T Consensus 305 L~~~G~~e~AL~~~~D-~~~rFeLAl~lg~L~~A~~~a~~~~~------~------------------------------ 347 (443)
T PF04053_consen 305 LEKKGYPELALQFVTD-PDHRFELALQLGNLDIALEIAKELDD------P------------------------------ 347 (443)
T ss_dssp HHHTT-HHHHHHHSS--HHHHHHHHHHCT-HHHHHHHCCCCST------H------------------------------
T ss_pred HHHCCCHHHHHhhcCC-hHHHhHHHHhcCCHHHHHHHHHhcCc------H------------------------------
Confidence 9999999999999999 59999999999999999999975433 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-HH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-AI 1097 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-~~ 1097 (1339)
.+|++||++||++||+++||+||+|+ + ||++|+|||+++||+++|++|+++|+.+|+. |+||+| ++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~---~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~-n~af~~~~~ 414 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA---K---------DFSGLLLLYSSTGDREKLSKLAKIAEERGDI-NIAFQAALL 414 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC---T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh---c---------CccccHHHHHHhCCHHHHHHHHHHHHHccCH-HHHHHHHHH
Confidence 79999999999999999999999999 8 9999999999999999999999999999999 999999 59
Q ss_pred cCCHHHHHHHHHHcCCchHHHHHHHHhCC
Q 000709 1098 LGDNALMEKAWQDTGMLAEAVLHAHAHGR 1126 (1339)
Q Consensus 1098 lgd~~~~~~~l~~~~~~~~A~~~A~t~~~ 1126 (1339)
+||+++|+++|+++||+||||+|||||||
T Consensus 415 lgd~~~cv~lL~~~~~~~~A~~~A~ty~~ 443 (443)
T PF04053_consen 415 LGDVEECVDLLIETGRLPEAALFARTYGP 443 (443)
T ss_dssp HT-HHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred cCCHHHHHHHHHHcCCchHHHHHHHhcCC
Confidence 99999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-39 Score=358.03 Aligned_cols=327 Identities=21% Similarity=0.309 Sum_probs=281.9
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
..+.||.+.|.|++|+|+|..|+||+.|.++|+||..+..++.+.+ +|...+.+++ ||+..|++|+
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~----------- 176 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGS----------- 176 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccc-----------
Confidence 3578999999999999999999999999999999999999999998 7789999988 9999999997
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCC-----CCCeEEEEEecCcEE-EEEecCCceee
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGRHFLVICCVNKAI-FLDLVTMRGRD 156 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafsp-----dg~~lLasgs~dg~I-~wD~~t~~~~~ 156 (1339)
.||+|++||..+++++. ..+.+| ...|.+++|.| ..+ +|++++.|+.+ +||...+.+
T Consensus 177 ----------~dg~I~lwdpktg~~~g---~~l~gH-~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~~-- 239 (480)
T KOG0271|consen 177 ----------KDGSIRLWDPKTGQQIG---RALRGH-KKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGTC-- 239 (480)
T ss_pred ----------cCCeEEEecCCCCCccc---ccccCc-ccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCceE--
Confidence 68999999999998863 455555 88999999976 344 89999999999 668887754
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe--------eeCCCCC
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGEA 228 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf--------~~spdg~ 228 (1339)
+....+|...|+|+.| ....+|++||.|++|++|+...|.+.+.+. ||.+.|+.++.- .|.+.++
T Consensus 240 ~~~lsgHT~~VTCvrw------GG~gliySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRW------GGEGLIYSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred EEEeccCccceEEEEE------cCCceEEecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccc
Confidence 5567899999999999 335699999999999999999999999997 999999998621 1333343
Q ss_pred -------------------------EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000709 229 -------------------------LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1339)
Q Consensus 229 -------------------------~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1339)
.++|||+|.++.+|+-...+. +...+.+|..-|+.+.|+| |+++|++
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk-----pi~rmtgHq~lVn~V~fSP---d~r~IAS 384 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK-----PITRMTGHQALVNHVSFSP---DGRYIAS 384 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc-----chhhhhchhhheeeEEECC---CccEEEE
Confidence 499999999999999765441 2334789999999999999 8999999
Q ss_pred EeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCC
Q 000709 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP 360 (1339)
Q Consensus 284 gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~ 360 (1339)
+|-|+.|++||.++|+.+.+ ++||-..|+.++|+.|.++| +||.|.+ +|++++...
T Consensus 385 aSFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------- 443 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------- 443 (480)
T ss_pred eecccceeeeeCCCcchhhh------hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee---------------
Confidence 99999999999999998877 68999999999999999865 8899997 899997632
Q ss_pred CeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 361 ~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
.+-+.+|.+ .|+++.|+| ++..+++|+.|.++ ++|.
T Consensus 444 ~~DLpGh~D-EVf~vDwsp-DG~rV~sggkdkv~-~lw~ 479 (480)
T KOG0271|consen 444 KQDLPGHAD-EVFAVDWSP-DGQRVASGGKDKVL-RLWR 479 (480)
T ss_pred cccCCCCCc-eEEEEEecC-CCceeecCCCceEE-Eeec
Confidence 445667888 899999999 57779999999996 8994
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=317.94 Aligned_cols=286 Identities=17% Similarity=0.211 Sum_probs=245.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-------cccceeEeeccccCC
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-------AKLEKLAEGELEHKG 76 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-------~d~~~Lasgs~d~~g 76 (1339)
+.+.+||.++|.|++|+|||++||+|+.||+|++||-++|+++..--.+|...|..++ +..++|++++
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s----- 224 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS----- 224 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc-----
Confidence 6789999999999999999999999999999999999999887766668888888887 5667777776
Q ss_pred CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee
Q 000709 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1339)
Q Consensus 77 k~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~ 155 (1339)
.||.++|||+..++++ ..+.+| +..|+|+.|--+| ++.+|+.|++| +|+...+.+
T Consensus 225 ----------------kDg~vrIWd~~~~~~~----~~lsgH-T~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~- 280 (480)
T KOG0271|consen 225 ----------------KDGSVRIWDTKLGTCV----RTLSGH-TASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKL- 280 (480)
T ss_pred ----------------CCCCEEEEEccCceEE----EEeccC-ccceEEEEEcCCc--eEEecCCCceEEEEEccchhH-
Confidence 6899999999999886 456666 9999999998777 99999999999 667766654
Q ss_pred eccccccCCCCeEEEEEeec------cccCCC-------------------------CEEEEEECCCcEEEEECCC-CeE
Q 000709 156 DIPKQELDNKSLVCMEFLSR------SAVGDV-------------------------PLVAFGSSDGVIRVLSMIS-WKL 203 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~------s~Spdg-------------------------~~LasGs~DgtIrIWDl~t-~~~ 203 (1339)
+..+.+|...|+.++.+.. .|.|.+ ..+++||+|.++.+|+... .++
T Consensus 281 -~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 281 -CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred -HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 5567899999999888521 112223 4599999999999999764 457
Q ss_pred EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000709 204 VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1339)
Q Consensus 204 i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1339)
+.++. +|..-|+.+. |+||+++++|+|.|..|++||.++|+.+.. ++||-..|+.++|+. |.++|++
T Consensus 360 i~rmt-gHq~lVn~V~---fSPd~r~IASaSFDkSVkLW~g~tGk~las------fRGHv~~VYqvawsa---DsRLlVS 426 (480)
T KOG0271|consen 360 ITRMT-GHQALVNHVS---FSPDGRYIASASFDKSVKLWDGRTGKFLAS------FRGHVAAVYQVAWSA---DSRLLVS 426 (480)
T ss_pred hhhhh-chhhheeeEE---ECCCccEEEEeecccceeeeeCCCcchhhh------hhhccceeEEEEecc---CccEEEE
Confidence 77776 9999999997 899999999999999999999999997665 799999999999998 8999999
Q ss_pred EeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EE
Q 000709 284 IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IW 338 (1339)
Q Consensus 284 gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LW 338 (1339)
||.|.++++||+++.+.... +.||.+.|+++.|+|||..+ +++.|.. +|
T Consensus 427 ~SkDsTLKvw~V~tkKl~~D------LpGh~DEVf~vDwspDG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQD------LPGHADEVFAVDWSPDGQRVASGGKDKVLRLW 478 (480)
T ss_pred cCCCceEEEEEeeeeeeccc------CCCCCceEEEEEecCCCceeecCCCceEEEee
Confidence 99999999999998886655 79999999999999999977 5667763 66
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=295.78 Aligned_cols=287 Identities=20% Similarity=0.247 Sum_probs=244.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
-++|+||.+.|.++.|++|.++|++++.||.+.|||.-|...++-+..
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-------------------------------- 95 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-------------------------------- 95 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec--------------------------------
Confidence 489999999999999999999999999999999999876544443331
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCC----ceeecc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM----RGRDIP 158 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~----~~~~v~ 158 (1339)
...+|..++|+|.|+ +++.|+-|... ++++.+. ......
T Consensus 96 -----------------------------------~s~WVMtCA~sPSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r 139 (343)
T KOG0286|consen 96 -----------------------------------PSSWVMTCAYSPSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSR 139 (343)
T ss_pred -----------------------------------CceeEEEEEECCCCC-eEEecCcCceeEEEecccccccccceeee
Confidence 145688899999998 99999988888 5576643 222334
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCC
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~sp-dg~~LaSgS~Dg 237 (1339)
.+.+|.+++.|+.|. +...|+++|.|.++-+||+++++.+..|. ||.+.|.++. ++| +++.++||+-|+
T Consensus 140 ~l~gHtgylScC~f~------dD~~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~sls---l~p~~~ntFvSg~cD~ 209 (343)
T KOG0286|consen 140 ELAGHTGYLSCCRFL------DDNHILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLS---LSPSDGNTFVSGGCDK 209 (343)
T ss_pred eecCccceeEEEEEc------CCCceEecCCCceEEEEEcccceEEEEec-CCcccEEEEe---cCCCCCCeEEeccccc
Confidence 468999999999994 57789999999999999999999999998 9999999998 677 999999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1339)
+.++||++.+.+.+. +.+|+..|+++.|+| +|.-+++|++|++.|+||++..+.+..+.. ..-...|
T Consensus 210 ~aklWD~R~~~c~qt------F~ghesDINsv~ffP---~G~afatGSDD~tcRlyDlRaD~~~a~ys~----~~~~~gi 276 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQT------FEGHESDINSVRFFP---SGDAFATGSDDATCRLYDLRADQELAVYSH----DSIICGI 276 (343)
T ss_pred ceeeeeccCcceeEe------ecccccccceEEEcc---CCCeeeecCCCceeEEEeecCCcEEeeecc----CcccCCc
Confidence 999999999987765 799999999999999 899999999999999999999998888642 2334578
Q ss_pred eEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000709 318 WCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1339)
Q Consensus 318 ~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I 394 (1339)
++++||-.|++| +|..|.+ +||.-.++ ....+.+|.. +|.|+..+| ++.-+++|+.|..+
T Consensus 277 tSv~FS~SGRlLfagy~d~~c~vWDtlk~e---------------~vg~L~GHeN-RvScl~~s~-DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 277 TSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---------------RVGVLAGHEN-RVSCLGVSP-DGMAVATGSWDSTL 339 (343)
T ss_pred eeEEEcccccEEEeeecCCceeEeeccccc---------------eEEEeeccCC-eeEEEEECC-CCcEEEecchhHhe
Confidence 999999999987 5566665 89987653 2557778988 999999999 68889999999997
Q ss_pred EEEec
Q 000709 395 ISEFD 399 (1339)
Q Consensus 395 lriWd 399 (1339)
|+|.
T Consensus 340 -riW~ 343 (343)
T KOG0286|consen 340 -RIWA 343 (343)
T ss_pred -eecC
Confidence 9994
No 7
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.4e-33 Score=311.28 Aligned_cols=278 Identities=22% Similarity=0.288 Sum_probs=246.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--c--ccceeEeeccccCCCccccccC
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--A--KLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~--d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
|-+..|..+.|+.|+..|+||+.+|.++||+..++..+.+|. +|...+..+. | ++..|++++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s------------- 238 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATAS------------- 238 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeec-------------
Confidence 456789999999999999999999999999999999999998 5666655554 3 356788776
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
.||++++|++.+...+ ..+.+| ...|..++|+|+|+ +|.++|.|.+. .||+.++. .+...++|
T Consensus 239 --------~Dgtvklw~~~~e~~l----~~l~gH-~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~--ElL~QEGH 302 (459)
T KOG0272|consen 239 --------ADGTVKLWKLSQETPL----QDLEGH-LARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS--ELLLQEGH 302 (459)
T ss_pred --------cCCceeeeccCCCcch----hhhhcc-hhhheeeeecCCCc-eeeecccccchhhcccccch--hhHhhccc
Confidence 6999999999987665 455555 78899999999998 99999999999 56999875 35567999
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
...|.+++| .+||.++++|+.|..-||||+++++++..+. +|...|.++. |+|+|..|+|||.|++++|||
T Consensus 303 s~~v~~iaf-----~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~---fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 303 SKGVFSIAF-----QPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVA---FSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred ccccceeEe-----cCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEe---ECCCceEEeecCCCCcEEEee
Confidence 999999999 6799999999999999999999999999987 8999999998 799999999999999999999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeC
Q 000709 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1339)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1339)
++..+.+ +++.+|..-|..|.|+| ..|.+|+|+|.|++++||...++.++++ +.||.+.|.++.++
T Consensus 374 LR~r~~l------y~ipAH~nlVS~Vk~~p--~~g~fL~TasyD~t~kiWs~~~~~~~ks------LaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 374 LRMRSEL------YTIPAHSNLVSQVKYSP--QEGYFLVTASYDNTVKIWSTRTWSPLKS------LAGHEGKVISLDIS 439 (459)
T ss_pred ecccccc------eecccccchhhheEecc--cCCeEEEEcccCcceeeecCCCcccchh------hcCCccceEEEEec
Confidence 9987754 44799999999999999 4789999999999999999999998887 79999999999999
Q ss_pred CCCCEE-EEecCCe--EEE
Q 000709 324 PNLDIL-TCVKDSH--IWA 339 (1339)
Q Consensus 324 pdg~iL-s~s~Dg~--LWD 339 (1339)
+|+..+ +++.|.+ +|.
T Consensus 440 ~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 440 PDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCceEEEeccCceeeecc
Confidence 999955 7889986 784
No 8
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-29 Score=301.93 Aligned_cols=308 Identities=16% Similarity=0.258 Sum_probs=235.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+..|..|.++|..++|||++++++|||+|..|+||++.+.+|+.++..|
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GH------------------------------- 92 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGH------------------------------- 92 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccc-------------------------------
Confidence 5778999999999999999999999999999999999998888777622
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.+.|+.+.|++.-+ |++++|+|++| +||+.++++ +....+
T Consensus 93 ------------------------------------lDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~--iavltG 133 (1202)
T KOG0292|consen 93 ------------------------------------LDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKC--IAVLTG 133 (1202)
T ss_pred ------------------------------------cceeEEeeccCCCc-eEEEccCCCeEEEEeccCCce--EEEEec
Confidence 55678888999987 99999999999 669999876 556889
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC----------------------------CeEEEEEecCCCCC
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS----------------------------WKLVRRYTGGHKGS 214 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t----------------------------~~~i~~l~~gH~~~ 214 (1339)
|+.+|+|..|| |...+++++|-|.+|||||+.. ...++....||...
T Consensus 134 HnHYVMcAqFh-----ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG 208 (1202)
T KOG0292|consen 134 HNHYVMCAQFH-----PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG 208 (1202)
T ss_pred CceEEEeeccC-----CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc
Confidence 99999999995 5788999999999999999852 12234444699999
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEE
Q 000709 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1339)
Q Consensus 215 V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1339)
|+-++ |+|.-.+|+||++|+.|++|.++..+.. .+-+..||.+.|.++-||| ..++|+|.|.|++|++||
T Consensus 209 VNwaA---fhpTlpliVSG~DDRqVKlWrmnetKaW----EvDtcrgH~nnVssvlfhp---~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 209 VNWAA---FHPTLPLIVSGADDRQVKLWRMNETKAW----EVDTCRGHYNNVSSVLFHP---HQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred cceEE---ecCCcceEEecCCcceeeEEEeccccce----eehhhhcccCCcceEEecC---ccceeEecCCCccEEEEe
Confidence 99554 8999999999999999999999865543 2345789999999999999 788999999999999999
Q ss_pred CCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--EEEccCCc--cccc--------ccCcc--ccCC--C
Q 000709 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPT--YSAL--------TRPLC--ELSS--L 358 (1339)
Q Consensus 295 l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~--LWDi~t~~--~~~~--------~~~l~--~~~~--~ 358 (1339)
+...+.+++| +......|.++.+|...+++++.|+- |+.+.... +... .+.+. ++.. .
T Consensus 279 m~kRt~v~tf------rrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 279 MTKRTSVQTF------RRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKD 352 (1202)
T ss_pred cccccceeee------eccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeecccccc
Confidence 9999988885 44556789999999999998888863 56655211 1000 01111 1111 1
Q ss_pred CCCeEEccCC--cccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 359 VPPQVLAHHK--KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 359 ~~~~tl~~~~--~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
.....++..+ ..++.++.++|..+..+.|..-|+...-+..+.+
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk 398 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPK 398 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecC
Confidence 1122222222 2367889999976666666554544334554443
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-28 Score=281.48 Aligned_cols=436 Identities=15% Similarity=0.148 Sum_probs=297.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--EEEeccCccceEEec--cccceeEeeccccCCCcc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI--YELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l--~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~ 79 (1339)
...|..|...|+-..|||.|-|+|+|+..|+|||||....+.+ .+|+.- .+.|.-++ .+++.++..++.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~-aG~I~Di~Wd~ds~RI~avGEG------ 124 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL-AGPIKDISWDFDSKRIAAVGEG------ 124 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec-ccccccceeCCCCcEEEEEecC------
Confidence 4578899999999999999999999999999999998754332 233311 11222222 444444333211
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~ 158 (1339)
.= .-|.+.+||..+. + ....+| ...|+++.|-|..+..+++|++|+.+.+ .-.-.+. -.
T Consensus 125 ------re-----rfg~~F~~DSG~S--v----Gei~Gh-Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF--k~ 184 (603)
T KOG0318|consen 125 ------RE-----RFGHVFLWDSGNS--V----GEITGH-SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF--KS 184 (603)
T ss_pred ------cc-----ceeEEEEecCCCc--c----ceeecc-ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee--ee
Confidence 10 1245556665443 2 345555 8889999999999999999999999955 4433333 33
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~--~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
....|...|+|+.| +|||.++++.+.||+|.+||-.+++.+..+. .+|++.|..+.| +||+..|+++|.|
T Consensus 185 s~r~HskFV~~VRy-----sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsW---sPDs~~~~T~SaD 256 (603)
T KOG0318|consen 185 SFREHSKFVNCVRY-----SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSW---SPDSTQFLTVSAD 256 (603)
T ss_pred cccccccceeeEEE-----CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEE---CCCCceEEEecCC
Confidence 46778899999999 8899999999999999999999999998884 479999999984 8999999999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 237 gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
.++|+||+.+.+++++|.....+ .+.-..+-|. ...|++.+.+|+|.+++......++. +.||...
T Consensus 257 kt~KIWdVs~~slv~t~~~~~~v---~dqqvG~lWq-----kd~lItVSl~G~in~ln~~d~~~~~~------i~GHnK~ 322 (603)
T KOG0318|consen 257 KTIKIWDVSTNSLVSTWPMGSTV---EDQQVGCLWQ-----KDHLITVSLSGTINYLNPSDPSVLKV------ISGHNKS 322 (603)
T ss_pred ceEEEEEeeccceEEEeecCCch---hceEEEEEEe-----CCeEEEEEcCcEEEEecccCCChhhe------ecccccc
Confidence 99999999999988876432221 1223345554 46899999999999999998886666 6899999
Q ss_pred eeEEEeCCCCC-EEEEecCCeE--EEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCe
Q 000709 317 SWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1339)
Q Consensus 317 V~svafspdg~-iLs~s~Dg~L--WDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~ 393 (1339)
|+++..+++++ +++|+.||+| |++.++...+ ..-..|.. .|.+++.+. .+. +++.+.|.+
T Consensus 323 ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--------------~~g~~h~n-qI~~~~~~~-~~~-~~t~g~Dd~ 385 (603)
T KOG0318|consen 323 ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--------------LAGKGHTN-QIKGMAASE-SGE-LFTIGWDDT 385 (603)
T ss_pred eeEEEEcCCCCEEEeeccCceEEEEecCCccccc--------------cccccccc-eEEEEeecC-CCc-EEEEecCCe
Confidence 99999999998 5599999985 9998763210 11134555 799999886 355 666666667
Q ss_pred EEEEecCCCCCCccc--cCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhHHHhh-cc
Q 000709 394 IISEFDPRSLPAVAP--LPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQI-KK 470 (1339)
Q Consensus 394 IlriWd~~~~p~i~~--~~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~-~r 470 (1339)
+ ++.+......-.. +....+. ..+....++.+-+..+. ..+.+++. .+
T Consensus 386 l-~~~~~~~~~~t~~~~~~lg~QP--~~lav~~d~~~avv~~~--------------------------~~iv~l~~~~~ 436 (603)
T KOG0318|consen 386 L-RVISLKDNGYTKSEVVKLGSQP--KGLAVLSDGGTAVVACI--------------------------SDIVLLQDQTK 436 (603)
T ss_pred E-EEEecccCcccccceeecCCCc--eeEEEcCCCCEEEEEec--------------------------CcEEEEecCCc
Confidence 5 6776543211111 0000000 01111112112111111 01111110 11
Q ss_pred cccccCCCCCccEEEEcCCCCEEEEEECCCCEEEEEEeCCceeee-------cCceeEEEeccCCCeEEEEec
Q 000709 471 HISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD-------SGSARLLAWDTCRDRFAILES 536 (1339)
Q Consensus 471 ~i~t~~~~e~~s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i~-------~G~~~~~aWs~~~~~fAvl~~ 536 (1339)
.+..+...+. +.++++|+|.++ ++...++.+.||+++...+.+ +|..+.++++|+...||+-+.
T Consensus 437 ~~~~~~~y~~-s~vAv~~~~~~v-aVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da 507 (603)
T KOG0318|consen 437 VSSIPIGYES-SAVAVSPDGSEV-AVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDA 507 (603)
T ss_pred ceeecccccc-ceEEEcCCCCEE-EEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEecc
Confidence 1111222233 589999999999 555677789999997643222 777888888888887777753
No 10
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-29 Score=298.77 Aligned_cols=434 Identities=17% Similarity=0.244 Sum_probs=309.7
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCccceEEe--ccccceeEeeccccCCCcc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK-AGGVDQRRLV--GAKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~-~~~~~~i~~v--s~d~~~Lasgs~d~~gk~~ 79 (1339)
+-+++.||.+.|+++.|+.|.++|++|+.|-+++||+++..+-+.... .+|.+.|... ..+...+.+.+
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs-------- 208 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS-------- 208 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe--------
Confidence 568899999999999999999999999999999999998665533332 2454443322 13333343333
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccc------------------------ccc-cc----ccccccCCCCeeeeeeCC
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRA------------------------AAA-EA----PTAVSNVTSGFASPPPST 130 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~------------------------l~~-~~----~~~~~~~~~~V~slafsp 130 (1339)
.||.+.+|....... ... .+ ..........|++.+|++
T Consensus 209 -------------kdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~ 275 (893)
T KOG0291|consen 209 -------------KDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHK 275 (893)
T ss_pred -------------cCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccC
Confidence 578888887661100 000 00 001111136799999999
Q ss_pred CCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC-CcEEEEECCCCeEEEEEe
Q 000709 131 KGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GVIRVLSMISWKLVRRYT 208 (1339)
Q Consensus 131 dg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-gtIrIWDl~t~~~i~~l~ 208 (1339)
.-. +|++|-.+|...+ .+....+ +.........|..+.| +..|.+|+.|+.. |.+-||++++...+.+..
T Consensus 276 ~t~-~lvvgFssG~f~LyelP~f~l--ih~LSis~~~I~t~~~-----N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ 347 (893)
T KOG0291|consen 276 GTN-LLVVGFSSGEFGLYELPDFNL--IHSLSISDQKILTVSF-----NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ 347 (893)
T ss_pred Cce-EEEEEecCCeeEEEecCCceE--EEEeecccceeeEEEe-----cccCCEEEEcCCccceEEEEEeeccceeeecc
Confidence 775 9999999999855 6665543 4344555678999999 6789999999865 899999999988888876
Q ss_pred cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC
Q 000709 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK 288 (1339)
Q Consensus 209 ~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg 288 (1339)
+|...++|++ ++|||+++++|+.||.|+|||..++-|..+ +..|+..|+.+.|+. .++.+++.|.||
T Consensus 348 -gH~~~i~~l~---YSpDgq~iaTG~eDgKVKvWn~~SgfC~vT------FteHts~Vt~v~f~~---~g~~llssSLDG 414 (893)
T KOG0291|consen 348 -GHSDRITSLA---YSPDGQLIATGAEDGKVKVWNTQSGFCFVT------FTEHTSGVTAVQFTA---RGNVLLSSSLDG 414 (893)
T ss_pred -ccccceeeEE---ECCCCcEEEeccCCCcEEEEeccCceEEEE------eccCCCceEEEEEEe---cCCEEEEeecCC
Confidence 9999999998 899999999999999999999999988765 688999999999998 799999999999
Q ss_pred cEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe---EEEccCCcccccccCccccCCCCCCeEE
Q 000709 289 TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVL 364 (1339)
Q Consensus 289 ~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~---LWDi~t~~~~~~~~~l~~~~~~~~~~tl 364 (1339)
+|+.||+...++.++|... ......|++..|.|.++ +|+.|.- ||++.++. .+..+
T Consensus 415 tVRAwDlkRYrNfRTft~P-----~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---------------llDiL 474 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSP-----EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---------------LLDIL 474 (893)
T ss_pred eEEeeeecccceeeeecCC-----CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---------------eeehh
Confidence 9999999999998887432 22345689999999987 5667763 89999873 25567
Q ss_pred ccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC-ccccC--------CCCCCCCceEEEEecCeEEEEEeee
Q 000709 365 AHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPLP--------TPSGSRDHSAVYIVERELKLVNFQL 435 (1339)
Q Consensus 365 ~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~-i~~~~--------~~~~s~~~s~~~~~~~~l~l~~f~l 435 (1339)
.+|.. +|.+++|+| .+.+|++|+.|.+| |+||+-.... +-++. ++....+..++-..++++.+++.+.
T Consensus 475 sGHEg-PVs~l~f~~-~~~~LaS~SWDkTV-RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 475 SGHEG-PVSGLSFSP-DGSLLASGSWDKTV-RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred cCCCC-cceeeEEcc-ccCeEEeccccceE-EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 88988 999999999 56789999999998 9999876421 11111 1111223444555666665555432
Q ss_pred ccCCCCCCCCCcccccCCcccCCCchhhHHHhhcccccccCCCCCccEEEEcCCCCEEEEEECCCCEEEEEEeCCceee
Q 000709 436 SSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV 514 (1339)
Q Consensus 436 ~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i 514 (1339)
.... .+-+|+.....++..+ ......+......++.+.+|+||+++ +....++.+.+|++.+.-++
T Consensus 552 ~~q~---------~~IdgrkD~~~gR~~~---D~~ta~~sa~~K~Ftti~ySaDG~~I-lAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 552 AVQV---------GSIDGRKDLSGGRKET---DRITAENSAKGKTFTTICYSADGKCI-LAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred ceee---------ccccchhhcccccccc---ceeehhhcccCCceEEEEEcCCCCEE-EecCCcccEEEEECchhhee
Confidence 1111 1223443322222211 01101112222446789999999999 66677889999998764433
No 11
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-28 Score=281.11 Aligned_cols=248 Identities=17% Similarity=0.254 Sum_probs=211.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
++.|+-..-+|++..|-...+|+++|++|..|||+|+.+++.++.|+.|
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH------------------------------- 96 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH------------------------------- 96 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc-------------------------------
Confidence 5666666778889999999999999999999999999999999999844
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.+.|++++.+|..+ +++++|+|.+| .||++.. ..+...+++
T Consensus 97 ------------------------------------~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~-wa~~qtfeG 138 (794)
T KOG0276|consen 97 ------------------------------------SDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENE-WACEQTFEG 138 (794)
T ss_pred ------------------------------------ccceeeeeecCCCC-eEEecCCccEEEEeeccCc-eeeeeEEcC
Confidence 45688899999998 99999999999 5677653 556677899
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|..+|++++|.|. |.+.++++|-|++|+||.+.+..+..++. ||...|+|++.+ .-.|..+|+||++|.+|+||
T Consensus 139 H~HyVMqv~fnPk----D~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy-~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 139 HEHYVMQVAFNPK----DPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYY-TGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred cceEEEEEEecCC----CccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEec-cCCCcceEEecCCCceEEEe
Confidence 9999999999763 77899999999999999999999999998 999999999843 45566799999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
|..+..|+++ +.||...|..+.||| .-++|+|||.||++|||+..+.+...+ +...-..+||++-
T Consensus 213 DyQtk~CV~T------LeGHt~Nvs~v~fhp---~lpiiisgsEDGTvriWhs~Ty~lE~t------Ln~gleRvW~I~~ 277 (794)
T KOG0276|consen 213 DYQTKSCVQT------LEGHTNNVSFVFFHP---ELPIIISGSEDGTVRIWNSKTYKLEKT------LNYGLERVWCIAA 277 (794)
T ss_pred ecchHHHHHH------hhcccccceEEEecC---CCcEEEEecCCccEEEecCcceehhhh------hhcCCceEEEEee
Confidence 9999998765 899999999999999 789999999999999999988776555 4555678999999
Q ss_pred CCCCCEEEEecC-Ce-EEEcc
Q 000709 323 APNLDILTCVKD-SH-IWAIE 341 (1339)
Q Consensus 323 spdg~iLs~s~D-g~-LWDi~ 341 (1339)
.+.+..++.|.| |. +..+.
T Consensus 278 ~k~~~~i~vG~Deg~i~v~lg 298 (794)
T KOG0276|consen 278 HKGDGKIAVGFDEGSVTVKLG 298 (794)
T ss_pred cCCCCeEEEeccCCcEEEEcc
Confidence 888766655544 44 34444
No 12
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=299.99 Aligned_cols=353 Identities=18% Similarity=0.273 Sum_probs=268.5
Q ss_pred eEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec----cccceeEeeccccCCC-
Q 000709 4 LKAFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGK- 77 (1339)
Q Consensus 4 l~~L~g-Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs----~d~~~Lasgs~d~~gk- 77 (1339)
++.++. |+.+|..++|+|.|.+|++|+.||.|+|||+..+.+.+.|+. |.+-+.++. .....|++|..|...+
T Consensus 97 irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~sg~~D~~v~v 175 (775)
T KOG0319|consen 97 IRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLASGATDGTVRV 175 (775)
T ss_pred hHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheeecCCCceEEE
Confidence 445666 999999999999999999999999999999999999999984 444444444 3334567777665421
Q ss_pred --------ccccc--cCCceEEEEE-------------------------------------------------------
Q 000709 78 --------PTEAM--RGGSVKQVNF------------------------------------------------------- 92 (1339)
Q Consensus 78 --------~~~~l--~~g~V~sVaF------------------------------------------------------- 92 (1339)
|+..+ |.+.|+++.|
T Consensus 176 wnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~T 255 (775)
T KOG0319|consen 176 WNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIIT 255 (775)
T ss_pred EEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEE
Confidence 12211 2255555555
Q ss_pred --cCCeEEEEEcCCccccccc-----------------------------------------------------------
Q 000709 93 --YDDDVRFWQLWRNRAAAAE----------------------------------------------------------- 111 (1339)
Q Consensus 93 --~Dg~IrlWDl~~~~~l~~~----------------------------------------------------------- 111 (1339)
.+|.+++||..++++....
T Consensus 256 aG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e 335 (775)
T KOG0319|consen 256 AGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPE 335 (775)
T ss_pred ecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCc
Confidence 3445555555444432100
Q ss_pred ----------------------cccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC--CceeeccccccCCCC
Q 000709 112 ----------------------APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT--MRGRDIPKQELDNKS 166 (1339)
Q Consensus 112 ----------------------~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t--~~~~~v~~~~~h~~~ 166 (1339)
.....+| +..|.++....+|. +|++|+.|+.+ .|-++. .+..++....+|...
T Consensus 336 ~~~laVATNs~~lr~y~~~~~~c~ii~GH-~e~vlSL~~~~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 336 ESHLAVATNSPELRLYTLPTSYCQIIPGH-TEAVLSLDVWSSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred cceEEEEeCCCceEEEecCCCceEEEeCc-hhheeeeeecccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 0111222 55666666445564 99999999988 554533 223355566889999
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-----EEE---EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-----LVR---RYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~-----~i~---~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
|.++++. .....+++++|.|++|++|++...+ .+. .....|...|+|++ .+|+..+|+|||.|++
T Consensus 414 vgava~~----~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va---ia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 414 VGAVAGS----KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA---IAPNDKLIATGSQDKT 486 (775)
T ss_pred cceeeec----ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE---ecCCCceEEecccccc
Confidence 9999993 2345789999999999999997521 111 11237999999998 8999999999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
.++|++....... ++.||..+|+++.|+| ..+.++|+|.|++|+||.+.++.|+++ +.||+..|.
T Consensus 487 aKiW~le~~~l~~------vLsGH~RGvw~V~Fs~---~dq~laT~SgD~TvKIW~is~fSClkT------~eGH~~aVl 551 (775)
T KOG0319|consen 487 AKIWDLEQLRLLG------VLSGHTRGVWCVSFSK---NDQLLATCSGDKTVKIWSISTFSCLKT------FEGHTSAVL 551 (775)
T ss_pred eeeecccCceEEE------EeeCCccceEEEEecc---ccceeEeccCCceEEEEEeccceeeee------ecCccceeE
Confidence 9999999665544 4899999999999999 678999999999999999999999998 589999999
Q ss_pred EEEeCCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 319 CHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 319 svafspdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
.+.|-.+|. +++|+.||- ||++.+. .+..++..|.+ +||++..++. ...+++|+.||.|
T Consensus 552 ra~F~~~~~qliS~~adGliKlWnikt~---------------eC~~tlD~H~D-rvWaL~~~~~-~~~~~tgg~Dg~i- 613 (775)
T KOG0319|consen 552 RASFIRNGKQLISAGADGLIKLWNIKTN---------------ECEMTLDAHND-RVWALSVSPL-LDMFVTGGGDGRI- 613 (775)
T ss_pred eeeeeeCCcEEEeccCCCcEEEEeccch---------------hhhhhhhhccc-eeEEEeecCc-cceeEecCCCeEE-
Confidence 999998887 679999994 8999986 45778889999 9999999994 5679999999998
Q ss_pred EEec
Q 000709 396 SEFD 399 (1339)
Q Consensus 396 riWd 399 (1339)
.+|.
T Consensus 614 ~~wk 617 (775)
T KOG0319|consen 614 IFWK 617 (775)
T ss_pred EEee
Confidence 4774
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-30 Score=292.03 Aligned_cols=243 Identities=21% Similarity=0.303 Sum_probs=219.0
Q ss_pred eEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcc
Q 000709 4 LKAFRPTNDKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPd--g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~ 79 (1339)
+++|+||+..|.++.|||. +..||||+.||++++|++.+.+++..+. +|...+.-+. |+|++|.+++
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~Tas-------- 280 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTAS-------- 280 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecc--------
Confidence 7899999999999999997 5699999999999999999989999998 5566666665 9999999987
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~ 158 (1339)
+|.+-|+||+.++..+ -...|| ...|.+++|++||. ++++|+.|..- +||++++++ +.
T Consensus 281 -------------fD~tWRlWD~~tk~El----L~QEGH-s~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~--im 339 (459)
T KOG0272|consen 281 -------------FDSTWRLWDLETKSEL----LLQEGH-SKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRC--IM 339 (459)
T ss_pred -------------cccchhhcccccchhh----Hhhccc-ccccceeEecCCCc-eeeccCccchhheeecccCcE--EE
Confidence 6889999999998765 234454 88899999999998 99999999988 779999976 55
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCC
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDG 237 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~sp-dg~~LaSgS~Dg 237 (1339)
.+.+|.+.|..|+| +|+|..|+|||.|++++|||++..+.+..+. +|..-|+.++ |+| .|.+|+|+|.|+
T Consensus 340 ~L~gH~k~I~~V~f-----sPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk---~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 340 FLAGHIKEILSVAF-----SPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVK---YSPQEGYFLVTASYDN 410 (459)
T ss_pred EecccccceeeEeE-----CCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheE---ecccCCeEEEEcccCc
Confidence 67889999999999 8899999999999999999999988888887 9999999998 676 889999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEE
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1339)
++++|...+..+++. +.||++.|.++++++ ++++|+|++.|+++++|.
T Consensus 411 t~kiWs~~~~~~~ks------LaGHe~kV~s~Dis~---d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKS------LAGHEGKVISLDISP---DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchh------hcCCccceEEEEecc---CCceEEEeccCceeeecc
Confidence 999999999887665 899999999999999 899999999999999995
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8.8e-29 Score=263.89 Aligned_cols=298 Identities=15% Similarity=0.183 Sum_probs=234.3
Q ss_pred eeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccc
Q 000709 3 RLKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPd-g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
.+++++||.++|..++|||- |..||||+.|+.||||+...+......
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck-------------------------------- 53 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCK-------------------------------- 53 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEE--------------------------------
Confidence 48899999999999999998 899999999999999998742111000
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
..+.+.|...|++++|+|.|+ +|++++.|.++ +|.-..+...++..+
T Consensus 54 -------------------------------~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~Iw~k~~~efecv~~l 101 (312)
T KOG0645|consen 54 -------------------------------TVLDDGHKRSVRSVAWSPHGR-YLASASFDATVVIWKKEDGEFECVATL 101 (312)
T ss_pred -------------------------------EeccccchheeeeeeecCCCc-EEEEeeccceEEEeecCCCceeEEeee
Confidence 011122366799999999998 99999999999 554445667788889
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~---~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg 237 (1339)
++|...|.|++| |++|++|++|+.|.+|-||.+..+ .++..+. +|...|..+. ++|...+|+|+|.|.
T Consensus 102 EGHEnEVK~Vaw-----s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~---WHPt~dlL~S~SYDn 172 (312)
T KOG0645|consen 102 EGHENEVKCVAW-----SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVI---WHPTEDLLFSCSYDN 172 (312)
T ss_pred eccccceeEEEE-----cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEE---EcCCcceeEEeccCC
Confidence 999999999999 889999999999999999998743 6677776 9999999997 589899999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1339)
+|++|+-..+. .+....++.+|...|.+++|++ .|..|+++++|++|+||...+.- -..|+..+
T Consensus 173 TIk~~~~~~dd---dW~c~~tl~g~~~TVW~~~F~~---~G~rl~s~sdD~tv~Iw~~~~~~----------~~~~sr~~ 236 (312)
T KOG0645|consen 173 TIKVYRDEDDD---DWECVQTLDGHENTVWSLAFDN---IGSRLVSCSDDGTVSIWRLYTDL----------SGMHSRAL 236 (312)
T ss_pred eEEEEeecCCC---CeeEEEEecCccceEEEEEecC---CCceEEEecCCcceEeeeeccCc----------chhcccce
Confidence 99999877422 1344566899999999999999 78999999999999999966221 24678889
Q ss_pred eEEEeCCCCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 318 WCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 318 ~svafspdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+.++|. ++.+.+++.|+. |+..... ...+...+. ...-..|.. .|+++.|.|...++|++|++||.|
T Consensus 237 Y~v~W~-~~~IaS~ggD~~i~lf~~s~~----~d~p~~~l~----~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v- 305 (312)
T KOG0645|consen 237 YDVPWD-NGVIASGGGDDAIRLFKESDS----PDEPSWNLL----AKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIV- 305 (312)
T ss_pred Eeeeec-ccceEeccCCCEEEEEEecCC----CCCchHHHH----Hhhhccccc-ccceEEEcCCCCCceeecCCCceE-
Confidence 999999 777888888886 4543321 001111100 011123555 899999999668899999999997
Q ss_pred EEecC
Q 000709 396 SEFDP 400 (1339)
Q Consensus 396 riWd~ 400 (1339)
++|.+
T Consensus 306 ~~W~l 310 (312)
T KOG0645|consen 306 NFWEL 310 (312)
T ss_pred EEEEe
Confidence 89964
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=280.19 Aligned_cols=289 Identities=19% Similarity=0.278 Sum_probs=249.9
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
.+.+.||...|+.+-|||+-..+++++.|++|++||+.+|++...++.|
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGH------------------------------- 149 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGH------------------------------- 149 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhcc-------------------------------
Confidence 3567899999999999999999999999999999999998876666522
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.+.+.+++|+..|+ ++++++.|-.+ .||..+. .++++...+
T Consensus 150 ------------------------------------t~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~-~~c~ks~~g 191 (406)
T KOG0295|consen 150 ------------------------------------TDSVFDISFDASGK-YLATCSSDLSAKLWDFDTF-FRCIKSLIG 191 (406)
T ss_pred ------------------------------------ccceeEEEEecCcc-EEEecCCccchhheeHHHH-HHHHHHhcC
Confidence 33477788888897 99999999866 7787764 456777889
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|...|.++.|.| .|.+|++++.|.+|+.|++.++-+++++. +|...|..++ .+.||.++++|+.|.+|++|
T Consensus 192 h~h~vS~V~f~P-----~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~---v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 192 HEHGVSSVFFLP-----LGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVR---VNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred cccceeeEEEEe-----cCCeeeecccccceeEEecccceeEEecc-CchHhEEEEE---ecCCeeEEEecCCCceEEEE
Confidence 999999999965 58999999999999999999999999998 9999999887 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeecc------------CCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcc
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRV------------MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL 310 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~------------~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l 310 (1339)
-+.+++|... +.+|+..|.+++|-|. .+.++++.+++.|++||+||+.++.++.+ +
T Consensus 263 ~~~t~~~k~~------lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t------L 330 (406)
T KOG0295|consen 263 VVATKQCKAE------LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT------L 330 (406)
T ss_pred Eeccchhhhh------hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE------E
Confidence 9999876543 7899999999999884 12347999999999999999999999988 6
Q ss_pred cccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 311 ACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 311 ~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
.+|.+.|+.++|+|.|++| +|..|++ +||++++ .+..++..|.. -+++++|+.+.+ ++++
T Consensus 331 ~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---------------~cmk~~~ah~h-fvt~lDfh~~~p-~VvT 393 (406)
T KOG0295|consen 331 VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---------------QCMKTLEAHEH-FVTSLDFHKTAP-YVVT 393 (406)
T ss_pred ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---------------eeeeccCCCcc-eeEEEecCCCCc-eEEe
Confidence 8999999999999999966 7788886 8999976 34556666666 799999999655 6999
Q ss_pred EECCCeEEEEecC
Q 000709 388 GTNVGVIISEFDP 400 (1339)
Q Consensus 388 Gs~DG~IlriWd~ 400 (1339)
|+-|..+ ++|..
T Consensus 394 GsVdqt~-KvwEc 405 (406)
T KOG0295|consen 394 GSVDQTV-KVWEC 405 (406)
T ss_pred cccccee-eeeec
Confidence 9999997 89964
No 16
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=4e-28 Score=259.89 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=235.3
Q ss_pred eeeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccc
Q 000709 2 LRLKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 2 L~l~~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~ 80 (1339)
+-..+|+||++.|+.++..+.++ .|++++.|.++.+|++....
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd------------------------------------ 49 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDD------------------------------------ 49 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCc------------------------------------
Confidence 34678999999999999999855 88999999999999986420
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
...+.. .+...+| ...|..+..++||+ +.++++.|+++ .||+.+++. ...
T Consensus 50 ---------------------~~~G~~----~r~~~GH-sH~v~dv~~s~dg~-~alS~swD~~lrlWDl~~g~~--t~~ 100 (315)
T KOG0279|consen 50 ---------------------IKYGVP----VRRLTGH-SHFVSDVVLSSDGN-FALSASWDGTLRLWDLATGES--TRR 100 (315)
T ss_pred ---------------------cccCce----eeeeecc-ceEecceEEccCCc-eEEeccccceEEEEEecCCcE--EEE
Confidence 000101 0233343 67788899999997 99999999999 569999854 446
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC--CCEEEEEeCCC
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVSGGSDG 237 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spd--g~~LaSgS~Dg 237 (1339)
+.+|...|.+++| ++|.+.|++||.|.+|++||............+|.+.|+|++ |+|+ ..+|+++|.|+
T Consensus 101 f~GH~~dVlsva~-----s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvr---fsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 101 FVGHTKDVLSVAF-----STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVR---FSPNESNPIIVSASWDK 172 (315)
T ss_pred EEecCCceEEEEe-----cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEE---EcCCCCCcEEEEccCCc
Confidence 8899999999999 889999999999999999998865544444434589999998 5666 78999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1339)
+|++||+++-+.... +.||++.|+.++++| ||.++++|+.||.+.+||++.++++.+ ..|...|
T Consensus 173 tvKvWnl~~~~l~~~------~~gh~~~v~t~~vSp---DGslcasGgkdg~~~LwdL~~~k~lys-------l~a~~~v 236 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTT------FIGHSGYVNTVTVSP---DGSLCASGGKDGEAMLWDLNEGKNLYS-------LEAFDIV 236 (315)
T ss_pred eEEEEccCCcchhhc------cccccccEEEEEECC---CCCEEecCCCCceEEEEEccCCceeEe-------ccCCCeE
Confidence 999999998765443 689999999999999 899999999999999999999999887 4788899
Q ss_pred eEEEeCCCCCEEEEecCC--eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 318 WCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 318 ~svafspdg~iLs~s~Dg--~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
.+++|+|+...|+...+. +|||+.+..... ..-.+..+. ... .......+++|++ ++..|++|..|+.|
T Consensus 237 ~sl~fspnrywL~~at~~sIkIwdl~~~~~v~--~l~~d~~g~----s~~-~~~~~clslaws~-dG~tLf~g~td~~i- 307 (315)
T KOG0279|consen 237 NSLCFSPNRYWLCAATATSIKIWDLESKAVVE--ELKLDGIGP----SSK-AGDPICLSLAWSA-DGQTLFAGYTDNVI- 307 (315)
T ss_pred eeEEecCCceeEeeccCCceEEEeccchhhhh--hcccccccc----ccc-cCCcEEEEEEEcC-CCcEEEeeecCCcE-
Confidence 999999998877544333 599998753210 000011110 111 1122567889999 56779999999997
Q ss_pred EEecCC
Q 000709 396 SEFDPR 401 (1339)
Q Consensus 396 riWd~~ 401 (1339)
++|.+.
T Consensus 308 rv~qv~ 313 (315)
T KOG0279|consen 308 RVWQVA 313 (315)
T ss_pred EEEEee
Confidence 899754
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.8e-28 Score=267.17 Aligned_cols=294 Identities=15% Similarity=0.264 Sum_probs=242.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
.+.++||.++|.|+++.|...|++||+.|++|+|||+.+|++..++..+
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGh------------------------------- 192 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGH------------------------------- 192 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecch-------------------------------
Confidence 5778999999999999999999999999999999999999988877622
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
-..|..+++|+..+ ++.+++.|+.| .||+...+. +....+
T Consensus 193 ------------------------------------i~~vr~vavS~rHp-YlFs~gedk~VKCwDLe~nkv--IR~YhG 233 (460)
T KOG0285|consen 193 ------------------------------------IETVRGVAVSKRHP-YLFSAGEDKQVKCWDLEYNKV--IRHYHG 233 (460)
T ss_pred ------------------------------------hheeeeeeecccCc-eEEEecCCCeeEEEechhhhh--HHHhcc
Confidence 22366778888776 89999999999 789987654 555678
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|-..|+|++.| |.-..|++|+.|.++||||+++...+..+. ||...|.++. +.+....+++||.|++|++|
T Consensus 234 HlS~V~~L~lh-----PTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~---~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 234 HLSGVYCLDLH-----PTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVM---CQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred ccceeEEEecc-----ccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEE---eecCCCceEEecCCceEEEe
Confidence 89999999995 578899999999999999999999999997 9999999996 66777789999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
|++.|+.... +..|...|.+++.|| ....++++|.| .|+-|++..|..++. +.+|...+.+++.
T Consensus 305 Dl~agkt~~t------lt~hkksvral~lhP---~e~~fASas~d-nik~w~~p~g~f~~n------lsgh~~iintl~~ 368 (460)
T KOG0285|consen 305 DLRAGKTMIT------LTHHKKSVRALCLHP---KENLFASASPD-NIKQWKLPEGEFLQN------LSGHNAIINTLSV 368 (460)
T ss_pred eeccCceeEe------eecccceeeEEecCC---chhhhhccCCc-cceeccCCccchhhc------cccccceeeeeee
Confidence 9999986543 688999999999999 67788888876 579999999887665 6899999999999
Q ss_pred CCCCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 323 APNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 323 spdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
..|+.+++|+..|. +||.+++-. +...........+... ..|++.+|.. .+..|++|..|..| ++|.-
T Consensus 369 nsD~v~~~G~dng~~~fwdwksg~n------yQ~~~t~vqpGSl~sE--agI~as~fDk-tg~rlit~eadKtI-k~~ke 438 (460)
T KOG0285|consen 369 NSDGVLVSGGDNGSIMFWDWKSGHN------YQRGQTIVQPGSLESE--AGIFASCFDK-TGSRLITGEADKTI-KMYKE 438 (460)
T ss_pred ccCceEEEcCCceEEEEEecCcCcc------cccccccccCCccccc--cceeEEeecc-cCceEEeccCCcce-EEEec
Confidence 99999999999997 688886521 1111111122223333 3599999998 46669999999997 89965
Q ss_pred CC
Q 000709 401 RS 402 (1339)
Q Consensus 401 ~~ 402 (1339)
.+
T Consensus 439 De 440 (460)
T KOG0285|consen 439 DE 440 (460)
T ss_pred cc
Confidence 43
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1.7e-27 Score=269.49 Aligned_cols=325 Identities=19% Similarity=0.270 Sum_probs=260.9
Q ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--cEEE--EEe----c-----cCccceEEec--cccceeE
Q 000709 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHR--QVIY--ELK----A-----GGVDQRRLVG--AKLEKLA 68 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg--~~l~--~~~----~-----~~~~~i~~vs--~d~~~La 68 (1339)
+.++ |...|.+.+|+|-.. .+++|+.|-+.++|++... .+.. .++ . .....+.+++ .+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4455 999999999999877 9999999999999998741 1111 111 0 1123455555 5566776
Q ss_pred eeccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EE
Q 000709 69 EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL 147 (1339)
Q Consensus 69 sgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~w 147 (1339)
+|. +||.+|+|+...+.. ...+.|..+|.++.|+.+|. +|++++.|+++ +|
T Consensus 252 tG~---------------------~~G~~riw~~~G~l~------~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilw 303 (524)
T KOG0273|consen 252 TGS---------------------EDGEARIWNKDGNLI------STLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILW 303 (524)
T ss_pred Eee---------------------cCcEEEEEecCchhh------hhhhccCCceEEEEEcCCCC-EEEeccCCccEEEE
Confidence 665 799999999987743 23455599999999999998 78888877766 77
Q ss_pred EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC
Q 000709 148 DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1339)
Q Consensus 148 D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg 227 (1339)
|..++.... .+..|..+-..|.|. +...+++++.||.|+|+.+....++.++. ||.+.|.++. +.|.+
T Consensus 304 d~~~g~~~q--~f~~~s~~~lDVdW~------~~~~F~ts~td~~i~V~kv~~~~P~~t~~-GH~g~V~alk---~n~tg 371 (524)
T KOG0273|consen 304 DAHTGTVKQ--QFEFHSAPALDVDWQ------SNDEFATSSTDGCIHVCKVGEDRPVKTFI-GHHGEVNALK---WNPTG 371 (524)
T ss_pred eccCceEEE--eeeeccCCccceEEe------cCceEeecCCCceEEEEEecCCCcceeee-cccCceEEEE---ECCCC
Confidence 998886543 467787777889993 56789999999999999999999999998 8999999998 68899
Q ss_pred CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc------CCCCCEEEEEeCCCcEEEEECCCCeeE
Q 000709 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV------MGGSPQLITIGADKTLAIWDTVSFKEL 301 (1339)
Q Consensus 228 ~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~------~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1339)
.+|+|+|+|+++++|.+..+.+.+. +.+|+..|..+.|+|. ...+..|++++.|++|++||+..+.++
T Consensus 372 ~LLaS~SdD~TlkiWs~~~~~~~~~------l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i 445 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQSNSVHD------LQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI 445 (524)
T ss_pred ceEEEecCCCeeEeeecCCCcchhh------hhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee
Confidence 9999999999999999988877665 7999999999999984 124578999999999999999999999
Q ss_pred EEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEe
Q 000709 302 RRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1339)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~s 378 (1339)
+. +..|+.+|++++|+|+|+++ +|+.||. +|++.++.. ...+.+.. .|..++|+
T Consensus 446 ~~------f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l---------------~~s~~~~~--~Ifel~Wn 502 (524)
T KOG0273|consen 446 HT------LMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL---------------VKSYQGTG--GIFELCWN 502 (524)
T ss_pred Ee------eccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe---------------eEeecCCC--eEEEEEEc
Confidence 98 57999999999999999977 6788885 899987632 23333333 59999999
Q ss_pred cCCCcEEEEEECCCeEEEEecCC
Q 000709 379 SLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 379 p~~~~lLatGs~DG~IlriWd~~ 401 (1339)
. .+..|..+-.||.+ ++.|+|
T Consensus 503 ~-~G~kl~~~~sd~~v-cvldlr 523 (524)
T KOG0273|consen 503 A-AGDKLGACASDGSV-CVLDLR 523 (524)
T ss_pred C-CCCEEEEEecCCCc-eEEEec
Confidence 9 46778888888886 677765
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.3e-27 Score=280.24 Aligned_cols=364 Identities=24% Similarity=0.313 Sum_probs=281.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccC--------CCccc
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK--------GKPTE 80 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~--------gk~~~ 80 (1339)
.+.|++++..||+.+|++++..+.+++|++.+|+++++++..|...+..+. +.+..|++|+.|+. +.|+.
T Consensus 62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th 141 (775)
T KOG0319|consen 62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH 141 (775)
T ss_pred hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE
Confidence 457899999999999999999999999999999999999986776666655 88889999998874 44666
Q ss_pred cccC--CceEEEEE-------------cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE
Q 000709 81 AMRG--GSVKQVNF-------------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI 145 (1339)
Q Consensus 81 ~l~~--g~V~sVaF-------------~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I 145 (1339)
.+.+ |.|.++.| .|+.+++||+.+.... ......| .+.|++++|++|+. -+++++.|.++
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tc---l~~~~~H-~S~vtsL~~~~d~~-~~ls~~RDkvi 216 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTC---LHTMILH-KSAVTSLAFSEDSL-ELLSVGRDKVI 216 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchH---HHHHHhh-hhheeeeeeccCCc-eEEEeccCcEE
Confidence 6665 88999999 7899999999965431 1344455 88899999999987 55666666655
Q ss_pred -EEEecCCcee---------------------------------------------------------------------
Q 000709 146 -FLDLVTMRGR--------------------------------------------------------------------- 155 (1339)
Q Consensus 146 -~wD~~t~~~~--------------------------------------------------------------------- 155 (1339)
+||+.+-+..
T Consensus 217 ~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~ 296 (775)
T KOG0319|consen 217 IVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQL 296 (775)
T ss_pred EEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCce
Confidence 6664211100
Q ss_pred ------------------eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeE
Q 000709 156 ------------------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISC 217 (1339)
Q Consensus 156 ------------------~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~s 217 (1339)
..+...+.++.|..|.|. .|+.++++.++..+.+|+|+..+..+. .+ .||...|++
T Consensus 297 l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~l----G~e~~~laVATNs~~lr~y~~~~~~c~-ii-~GH~e~vlS 370 (775)
T KOG0319|consen 297 LLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFL----GPEESHLAVATNSPELRLYTLPTSYCQ-II-PGHTEAVLS 370 (775)
T ss_pred EEEEccceEEEEEccccEEehhhcCCchhheeeeec----CCccceEEEEeCCCceEEEecCCCceE-EE-eCchhheee
Confidence 000011224456666664 578899999999999999999887775 44 499999999
Q ss_pred EEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 218 LMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 218 l~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
+. ...+|.+|+|||.|.+|++|.++.+.... .+.....+|...|.+++++. ....+|+++|.|+++++|++..
T Consensus 371 L~---~~~~g~llat~sKD~svilWr~~~~~~~~--~~~a~~~gH~~svgava~~~--~~asffvsvS~D~tlK~W~l~~ 443 (775)
T KOG0319|consen 371 LD---VWSSGDLLATGSKDKSVILWRLNNNCSKS--LCVAQANGHTNSVGAVAGSK--LGASFFVSVSQDCTLKLWDLPK 443 (775)
T ss_pred ee---ecccCcEEEEecCCceEEEEEecCCcchh--hhhhhhcccccccceeeecc--cCccEEEEecCCceEEEecCCC
Confidence 97 44567899999999999999995544322 23444689999999999987 4678999999999999999986
Q ss_pred CeeEE---EecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCccc
Q 000709 298 FKELR---RIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLR 371 (1339)
Q Consensus 298 ~~~l~---~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~ 371 (1339)
.+.-. .+........|...|+|++++|+..++ +||.|.+ ||++... ....++.+|.. .
T Consensus 444 s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---------------~l~~vLsGH~R-G 507 (775)
T KOG0319|consen 444 SKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---------------RLLGVLSGHTR-G 507 (775)
T ss_pred cccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc---------------eEEEEeeCCcc-c
Confidence 32211 111122457899999999999999977 6889986 9999854 23678999998 9
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccC
Q 000709 372 VYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1339)
Q Consensus 372 I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~ 410 (1339)
|||+.|+| ...+++|++.|++| ++|.+.....+.++.
T Consensus 508 vw~V~Fs~-~dq~laT~SgD~Tv-KIW~is~fSClkT~e 544 (775)
T KOG0319|consen 508 VWCVSFSK-NDQLLATCSGDKTV-KIWSISTFSCLKTFE 544 (775)
T ss_pred eEEEEecc-ccceeEeccCCceE-EEEEeccceeeeeec
Confidence 99999999 56789999999997 999998877666653
No 20
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=1.8e-27 Score=250.76 Aligned_cols=290 Identities=20% Similarity=0.270 Sum_probs=240.1
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEc
Q 000709 25 WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1339)
Q Consensus 25 ~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl 102 (1339)
+|+|+++|.+||+|...+|.|.++++ +...-+..++ ++.+.|+.+. ...||+||+
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~----------------------~qhvRlyD~ 68 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAG----------------------NQHVRLYDL 68 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhcc----------------------CCeeEEEEc
Confidence 89999999999999999999999998 4444455444 8888888874 678999999
Q ss_pred CCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCC
Q 000709 103 WRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDV 181 (1339)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg 181 (1339)
+++... ......+ |...|.++.|..+|+ ++.+|++||++ +||++...+.. .-.|..+|+++..| |+.
T Consensus 69 ~S~np~--Pv~t~e~-h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~~qR---~~~~~spVn~vvlh-----pnQ 136 (311)
T KOG0315|consen 69 NSNNPN--PVATFEG-HTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLSCQR---NYQHNSPVNTVVLH-----PNQ 136 (311)
T ss_pred cCCCCC--ceeEEec-cCCceEEEEEeecCe-EEEecCCCceEEEEeccCcccch---hccCCCCcceEEec-----CCc
Confidence 988653 1123334 478899999999998 99999999999 66998855433 34567999999995 578
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccc
Q 000709 182 PLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1339)
Q Consensus 182 ~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~g 261 (1339)
..|++|..+|.|++||+....+...+...-...|.++. ..++|..++.+...|...+|++-++.....+.|...++.
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~---v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLT---VMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEE---EcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 88999999999999999988887777656667888887 899999999999999999999998777777778888999
Q ss_pred cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC-eeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--E
Q 000709 262 HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--I 337 (1339)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--L 337 (1339)
|++.+..+.++| |+++|+++|.|.+++||+..+. +.-. .+.+|...+|..+||.||.+| +++.|+. +
T Consensus 214 h~~~il~C~lSP---d~k~lat~ssdktv~iwn~~~~~kle~------~l~gh~rWvWdc~FS~dg~YlvTassd~~~rl 284 (311)
T KOG0315|consen 214 HNGHILRCLLSP---DVKYLATCSSDKTVKIWNTDDFFKLEL------VLTGHQRWVWDCAFSADGEYLVTASSDHTARL 284 (311)
T ss_pred ccceEEEEEECC---CCcEEEeecCCceEEEEecCCceeeEE------EeecCCceEEeeeeccCccEEEecCCCCceee
Confidence 999999999999 8999999999999999999877 2222 368999999999999999966 7888885 9
Q ss_pred EEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEE
Q 000709 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1339)
Q Consensus 338 WDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~ 377 (1339)
|++..++ ....+.+|.+ ...|++.
T Consensus 285 W~~~~~k---------------~v~qy~gh~K-~~vc~~l 308 (311)
T KOG0315|consen 285 WDLSAGK---------------EVRQYQGHHK-AAVCVAL 308 (311)
T ss_pred cccccCc---------------eeeecCCccc-ccEEEEe
Confidence 9998763 2445666766 5555553
No 21
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1e-26 Score=274.23 Aligned_cols=347 Identities=15% Similarity=0.187 Sum_probs=267.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
+-|...+..|+|.+||+.-+.|++|-.+|...++.+....+++.+..+. ..|..+. ..|..|+.|+.
T Consensus 259 ~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~-~~I~t~~~N~tGDWiA~g~~---------- 327 (893)
T KOG0291|consen 259 HYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD-QKILTVSFNSTGDWIAFGCS---------- 327 (893)
T ss_pred eeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc-ceeeEEEecccCCEEEEcCC----------
Confidence 3344555889999999999999999999999999999999999887552 2333333 45777776641
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~ 161 (1339)
.=|.+-+|++.....+ -...+| ...+.+++++|||+ ++++|++|+.| +||..++- |+.++.
T Consensus 328 ----------klgQLlVweWqsEsYV----lKQQgH-~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf--C~vTFt 389 (893)
T KOG0291|consen 328 ----------KLGQLLVWEWQSESYV----LKQQGH-SDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF--CFVTFT 389 (893)
T ss_pred ----------ccceEEEEEeecccee----eecccc-ccceeeEEECCCCc-EEEeccCCCcEEEEeccCce--EEEEec
Confidence 2468999999887654 233444 78899999999998 99999999999 77888874 466789
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC-cEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG-LLI 240 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg-tVr 240 (1339)
.|...|+.+.| +..|+.+++.|.||+||.||+...+..+++.....-...|++ ..|.|.+++.|+.|. .|.
T Consensus 390 eHts~Vt~v~f-----~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscva---vD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 390 EHTSGVTAVQF-----TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVA---VDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred cCCCceEEEEE-----EecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEE---EcCCCCEEEeeccceEEEE
Confidence 99999999999 678999999999999999999999999999755556677776 789999999999987 499
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe-eEEEecCCCcccccCCceeE
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~s 319 (1339)
||++.+|+.+.. +.||+++|.+++|+| .+..|+|+|.|++||+||+-... .+.+ -.+...+..
T Consensus 462 vWS~qTGqllDi------LsGHEgPVs~l~f~~---~~~~LaS~SWDkTVRiW~if~s~~~vEt-------l~i~sdvl~ 525 (893)
T KOG0291|consen 462 VWSVQTGQLLDI------LSGHEGPVSGLSFSP---DGSLLASGSWDKTVRIWDIFSSSGTVET-------LEIRSDVLA 525 (893)
T ss_pred EEEeecCeeeeh------hcCCCCcceeeEEcc---ccCeEEeccccceEEEEEeeccCceeee-------EeeccceeE
Confidence 999999997654 799999999999999 78999999999999999986542 2222 245677889
Q ss_pred EEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCC-CeEEcc---CCcccEEEEEEecCCCcEEEEEECCC
Q 000709 320 HPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVP-PQVLAH---HKKLRVYCMVAHSLQPHLVATGTNVG 392 (1339)
Q Consensus 320 vafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~-~~tl~~---~~~~~I~~la~sp~~~~lLatGs~DG 392 (1339)
++|+|+|+-| ++.-||. +||+.............+..+.+. ...+.. .....++.+++++ ++..|.+|+...
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn 604 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESN 604 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcc
Confidence 9999999955 5678885 899885422212222222222111 111111 1123799999999 566788888888
Q ss_pred eEEEEecCCCCCCc
Q 000709 393 VIISEFDPRSLPAV 406 (1339)
Q Consensus 393 ~IlriWd~~~~p~i 406 (1339)
.| +++++++.-.+
T Consensus 605 ~i-CiY~v~~~vll 617 (893)
T KOG0291|consen 605 SI-CIYDVPEGVLL 617 (893)
T ss_pred cE-EEEECchhhee
Confidence 87 79998865443
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=274.65 Aligned_cols=277 Identities=18% Similarity=0.250 Sum_probs=228.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
...|..|.|.|+|+.|++|+..|.+.+||..+ |.+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~------fnF--------------------------------------- 130 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS------FNF--------------------------------------- 130 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCce------eeH---------------------------------------
Confidence 35688999999999999999999999999632 110
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc-CCCCeE
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-DNKSLV 168 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~-h~~~V~ 168 (1339)
......|++.|+++.|++++. ++++|..++.| .|+..... ++.... |...|+
T Consensus 131 ----------------------EtilQaHDs~Vr~m~ws~~g~-wmiSgD~gG~iKyWqpnmnn---Vk~~~ahh~eaIR 184 (464)
T KOG0284|consen 131 ----------------------ETILQAHDSPVRTMKWSHNGT-WMISGDKGGMIKYWQPNMNN---VKIIQAHHAEAIR 184 (464)
T ss_pred ----------------------HHHhhhhcccceeEEEccCCC-EEEEcCCCceEEecccchhh---hHHhhHhhhhhhh
Confidence 122233488999999999997 99999999999 55544332 333444 458999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
|++| ||+...++++|+||+|+|||....+.-..+. ||.-.|.|++| +|...+|+|||.|..|++||.+++.
T Consensus 185 dlaf-----SpnDskF~t~SdDg~ikiWdf~~~kee~vL~-GHgwdVksvdW---HP~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 185 DLAF-----SPNDSKFLTCSDDGTIKIWDFRMPKEERVLR-GHGWDVKSVDW---HPTKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred eecc-----CCCCceeEEecCCCeEEEEeccCCchhheec-cCCCCcceecc---CCccceeEEccCCceeEeecCCCcc
Confidence 9999 7889999999999999999999887777776 99999999995 7888899999999999999999999
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-
Q 000709 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD- 327 (1339)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~- 327 (1339)
|+.+ +.+|+..|..+.|+| ++++|+++|.|..++++|+++.+.+++ +++|...|+++.|+|-..
T Consensus 256 cl~t------lh~HKntVl~~~f~~---n~N~Llt~skD~~~kv~DiR~mkEl~~------~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 256 CLAT------LHGHKNTVLAVKFNP---NGNWLLTGSKDQSCKVFDIRTMKELFT------YRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred hhhh------hhhccceEEEEEEcC---CCCeeEEccCCceEEEEehhHhHHHHH------hhcchhhheeecccccccc
Confidence 8765 799999999999999 789999999999999999997776666 689999999999999755
Q ss_pred E-EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 328 I-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 328 i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
+ .++|.||. .|.+... .++..+...+...||+++||| -+++|++|++|..+ ++|.
T Consensus 321 lftsgg~Dgsvvh~~v~~~---------------~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~-rfw~ 378 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLE---------------EPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTV-RFWT 378 (464)
T ss_pred ceeeccCCCceEEEecccc---------------ccccCCCcccccceeeeeccc-cceeEeecCCCcce-eeec
Confidence 4 47889997 4766521 123333344444899999999 58999999999997 8995
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.96 E-value=2.2e-28 Score=292.28 Aligned_cols=318 Identities=18% Similarity=0.230 Sum_probs=240.6
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCC
Q 000709 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g 85 (1339)
++..-...|+|..|++|+..||.|..|..|++|.+...+ ++.++... +...+-..+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~---------~l~~~d~~s-------------- 428 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDAS---------DLSNIDTES-------------- 428 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchh---------hhccccccc--------------
Confidence 334445679999999999999999999999999998542 22222110 000000000
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCCceeeccccccCC
Q 000709 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELDN 164 (1339)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~~~~~v~~~~~h~ 164 (1339)
.|-.+.+.|-...... ....+| .++|+++.|+|+.+ +|++|+.|+++| |.+.+..+ +....+|.
T Consensus 429 -------ad~~~~~~D~~~~~~~----~~L~GH-~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~--~V~y~GH~ 493 (707)
T KOG0263|consen 429 -------ADVDVDMLDDDSSGTS----RTLYGH-SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSC--LVIYKGHL 493 (707)
T ss_pred -------cchhhhhccccCCcee----EEeecC-CCceeeeeeccccc-ceeeccCCcceeeeeccccee--EEEecCCC
Confidence 1111222232222221 345566 99999999999998 999999999995 57776544 44567999
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl 244 (1339)
.+|+++.| +|.|-|++|+|.|++-++|........+.+. +|...|.|+. |+|+.+++++||.|++||+||+
T Consensus 494 ~PVwdV~F-----~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~---FHPNs~Y~aTGSsD~tVRlWDv 564 (707)
T KOG0263|consen 494 APVWDVQF-----APRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVS---FHPNSNYVATGSSDRTVRLWDV 564 (707)
T ss_pred cceeeEEe-----cCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEE---ECCcccccccCCCCceEEEEEc
Confidence 99999999 7889999999999999999999888888887 9999999998 8999999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
.+|..++. +.||.++|.+++|+| +|++|++|+.|+.|++||+.+++.+.. +.+|++.|.++.|+.
T Consensus 565 ~~G~~VRi------F~GH~~~V~al~~Sp---~Gr~LaSg~ed~~I~iWDl~~~~~v~~------l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 565 STGNSVRI------FTGHKGPVTALAFSP---CGRYLASGDEDGLIKIWDLANGSLVKQ------LKGHTGTIYSLSFSR 629 (707)
T ss_pred CCCcEEEE------ecCCCCceEEEEEcC---CCceEeecccCCcEEEEEcCCCcchhh------hhcccCceeEEEEec
Confidence 99998775 689999999999999 899999999999999999999998776 689999999999999
Q ss_pred CCCEE-EEecCCe--EEEccCCcccccc----cC-----ccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEE
Q 000709 325 NLDIL-TCVKDSH--IWAIEHPTYSALT----RP-----LCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1339)
Q Consensus 325 dg~iL-s~s~Dg~--LWDi~t~~~~~~~----~~-----l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatG 388 (1339)
+|.+| ++|.|+. +||+......... .. .........+.++..... +|.++.|.. +...+++|
T Consensus 630 dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~t-pv~~l~Ftr-rNl~L~~g 703 (707)
T KOG0263|consen 630 DGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNT-PVVGLHFTR-RNLLLAVG 703 (707)
T ss_pred CCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCc-eEEEEEEec-cceeEEec
Confidence 99966 6788885 8999754332000 00 001122223445554444 888999987 44545554
No 24
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=5.1e-27 Score=259.04 Aligned_cols=335 Identities=16% Similarity=0.145 Sum_probs=276.8
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
.+.+|.+|++.|.+++.||+.++++||+.|..-.||+..+|..+.++. +|.+.+.++. .++.+|++|.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGd--------- 125 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGD--------- 125 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecC---------
Confidence 378999999999999999999999999999999999999999888887 7788888877 8999999987
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
.+|.|++|+..++..... +... -..+-=+.|+|.+. +|+.|+.||.+ .|.+.+.. ..+.
T Consensus 126 ------------msG~v~v~~~stg~~~~~----~~~e-~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~--~~kv 185 (399)
T KOG0296|consen 126 ------------MSGKVLVFKVSTGGEQWK----LDQE-VEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA--LCKV 185 (399)
T ss_pred ------------CCccEEEEEcccCceEEE----eecc-cCceEEEEeccccc-EEEeecCCCcEEEEECCCcc--eeeE
Confidence 589999999998865421 1112 33466688999887 99999999998 67776642 3445
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
+.+|+.+++|-.| .|+|+.+++|..||+|++||+.+++++.++.........++. ++..+..+++|+.++.+
T Consensus 186 ~~Gh~~~ct~G~f-----~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~---~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 186 MSGHNSPCTCGEF-----IPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCIS---LNLAGSTLTKGNSEGVA 257 (399)
T ss_pred ecCCCCCcccccc-----cCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccc---cccccceeEeccCCccE
Confidence 7889999999999 679999999999999999999999999888644555677776 78889999999999999
Q ss_pred EEEeCCCCCccceecc--cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce
Q 000709 240 ILWSADHGQDSRELVP--KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~--~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1339)
++-+..+|+.+....+ ......|+..+.|+.+.|....-++.++|+-||+|.|||+...+..+. ..|...|
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-------c~he~~V 330 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-------CEHEDGV 330 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-------ccCCCce
Confidence 9999988886544321 111245677778888877555678999999999999999998765443 5788899
Q ss_pred eEEEeCCCCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 318 WCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 318 ~svafspdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
..+.|-+...+++++.||. .||.+++ ....++.+|.. .|.+++.+| +..+++++++|++.
T Consensus 331 ~~l~w~~t~~l~t~c~~g~v~~wDaRtG---------------~l~~~y~GH~~-~Il~f~ls~-~~~~vvT~s~D~~a- 392 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACANGKVRQWDARTG---------------QLKFTYTGHQM-GILDFALSP-QKRLVVTVSDDNTA- 392 (399)
T ss_pred EEEEEcCcchheeeccCceEEeeecccc---------------ceEEEEecCch-heeEEEEcC-CCcEEEEecCCCeE-
Confidence 9999999666889999996 7999987 34678889988 999999999 68889999999996
Q ss_pred EEecC
Q 000709 396 SEFDP 400 (1339)
Q Consensus 396 riWd~ 400 (1339)
++|+.
T Consensus 393 ~VF~v 397 (399)
T KOG0296|consen 393 LVFEV 397 (399)
T ss_pred EEEec
Confidence 68864
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=6.2e-25 Score=251.25 Aligned_cols=436 Identities=14% Similarity=0.150 Sum_probs=284.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCcEEEEEeccCccceEEec--c-ccceeEeeccccCCCcc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADAS--DHVSVWNWEHRQVIYELKAGGVDQRRLVG--A-KLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~D--GtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~-d~~~Lasgs~d~~gk~~ 79 (1339)
.+|+.-.++|..++|+.++++|+..++. +..+++-+++|..+.++. +|...+.++. + .--.+++++
T Consensus 97 nef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~-GhSr~ins~~~KpsRPfRi~T~s-------- 167 (603)
T KOG0318|consen 97 NEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEIT-GHSRRINSVDFKPSRPFRIATGS-------- 167 (603)
T ss_pred eeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceee-ccceeEeeeeccCCCceEEEecc--------
Confidence 3455567899999999999988776543 333444444778888887 5566666665 2 223455555
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeec-
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI- 157 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v- 157 (1339)
.|++|.+++=...+. .....+|...|+|+.|+|||. ++++.+.|+.+ ++|-.+++....
T Consensus 168 -------------dDn~v~ffeGPPFKF-----k~s~r~HskFV~~VRysPDG~-~Fat~gsDgki~iyDGktge~vg~l 228 (603)
T KOG0318|consen 168 -------------DDNTVAFFEGPPFKF-----KSSFREHSKFVNCVRYSPDGS-RFATAGSDGKIYIYDGKTGEKVGEL 228 (603)
T ss_pred -------------CCCeEEEeeCCCeee-----eecccccccceeeEEECCCCC-eEEEecCCccEEEEcCCCccEEEEe
Confidence 355555554333222 223344577999999999998 77777777777 559888865432
Q ss_pred cccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC---CCCeeEEEEeeeCCCCCEEEEEe
Q 000709 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH---KGSISCLMTFMASSGEALLVSGG 234 (1339)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH---~~~V~sl~wf~~spdg~~LaSgS 234 (1339)
.....|.+.|.++.| +||+..+++++.|.+++|||+.+.++++++.-+. ...|-|+ | ....|++.+
T Consensus 229 ~~~~aHkGsIfalsW-----sPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-W-----qkd~lItVS 297 (603)
T KOG0318|consen 229 EDSDAHKGSIFALSW-----SPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-W-----QKDHLITVS 297 (603)
T ss_pred cCCCCccccEEEEEE-----CCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE-E-----eCCeEEEEE
Confidence 224589999999999 8899999999999999999999999999886343 3456666 6 367899999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
.+|+|.+++.......+ .+.||...|+++..+| ++.+|++|+.||.|.-||..++..-+.. -.+|.
T Consensus 298 l~G~in~ln~~d~~~~~------~i~GHnK~ITaLtv~~---d~~~i~SgsyDG~I~~W~~~~g~~~~~~-----g~~h~ 363 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLK------VISGHNKSITALTVSP---DGKTIYSGSYDGHINSWDSGSGTSDRLA-----GKGHT 363 (603)
T ss_pred cCcEEEEecccCCChhh------eecccccceeEEEEcC---CCCEEEeeccCceEEEEecCCccccccc-----ccccc
Confidence 99999999999887443 4799999999999999 7899999999999999999988764432 37899
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEccC--CcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCC
Q 000709 315 VASWCHPRAPNLDILTCVKDSHIWAIEH--PTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1339)
Q Consensus 315 ~~V~svafspdg~iLs~s~Dg~LWDi~t--~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG 392 (1339)
+.|.+++.+..+.++++|.|.+||-+.- ..+.. ...+.... .-.+++..++ +.+++..+.++
T Consensus 364 nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~-------------~~~~~lg~--QP~~lav~~d-~~~avv~~~~~ 427 (603)
T KOG0318|consen 364 NQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK-------------SEVVKLGS--QPKGLAVLSD-GGTAVVACISD 427 (603)
T ss_pred ceEEEEeecCCCcEEEEecCCeEEEEecccCcccc-------------cceeecCC--CceeEEEcCC-CCEEEEEecCc
Confidence 9999999999899999999999876542 11100 00011111 1226666663 33344444444
Q ss_pred eEEEEecCCCCCCccccCCC---CCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhHHHhhc
Q 000709 393 VIISEFDPRSLPAVAPLPTP---SGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIK 469 (1339)
Q Consensus 393 ~IlriWd~~~~p~i~~~~~~---~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~ 469 (1339)
.++ +=|......+...... .-..+.+.+-+...+-++.-|.+..... . ++. +. .
T Consensus 428 iv~-l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l---------~----------ee~-~~--~ 484 (603)
T KOG0318|consen 428 IVL-LQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL---------K----------EEA-KL--L 484 (603)
T ss_pred EEE-EecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc---------c----------cee-ee--e
Confidence 442 2222211111000000 0011122222222222333333221110 0 000 00 0
Q ss_pred ccccccCCCCCccEEEEcCCCCEEEEEECCCCEEEEEEeCCceee------ecCceeEEEeccCCCeEEEEeccCCCC
Q 000709 470 KHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIV------DSGSARLLAWDTCRDRFAILESALTPR 541 (1339)
Q Consensus 470 r~i~t~~~~e~~s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i------~~G~~~~~aWs~~~~~fAvl~~~~~~~ 541 (1339)
+ .. ...+.+++||||+|| ++.+-+++..+|++.+.... -.++++.++|+|+..++|- .+++..
T Consensus 485 ~-----h~-a~iT~vaySpd~~yl-a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT--GSlDt~ 553 (603)
T KOG0318|consen 485 E-----HR-AAITDVAYSPDGAYL-AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT--GSLDTN 553 (603)
T ss_pred c-----cc-CCceEEEECCCCcEE-EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe--ccccce
Confidence 0 01 223689999999999 66689999999998754332 2778999999998765554 445543
No 26
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.96 E-value=4.3e-27 Score=248.00 Aligned_cols=273 Identities=18% Similarity=0.321 Sum_probs=234.8
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
+|.+||+|...++.|. ..+.|.++.|+.+...|+++ .|++++.-++-.+|+++.+...+..+.+|...|+.+.|
T Consensus 18 YDhTIRfWqa~tG~C~-----rTiqh~dsqVNrLeiTpdk~-~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICS-----RTIQHPDSQVNRLEITPDKK-DLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred CcceeeeeehhcCeEE-----EEEecCccceeeEEEcCCcc-hhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 7999999999999996 45566688999999999998 88888877777779999887677788999999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
..+|+++++|++||+++|||++...+.+.+ .|..+|+++. .+|+...|++|..+|.|++||+....+.+.
T Consensus 92 -----~~dgrWMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vv---lhpnQteLis~dqsg~irvWDl~~~~c~~~ 161 (311)
T KOG0315|consen 92 -----QCDGRWMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVV---LHPNQTELISGDQSGNIRVWDLGENSCTHE 161 (311)
T ss_pred -----eecCeEEEecCCCceEEEEeccCcccchhc--cCCCCcceEE---ecCCcceEEeecCCCcEEEEEccCCccccc
Confidence 579999999999999999999997776666 5889999997 899999999999999999999999877766
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~ 331 (1339)
+. ..-...|.++...| |+.+++.+...|+.++|++-+......+.|+.++..|..-+..+.+|||+++| +|
T Consensus 162 li-----Pe~~~~i~sl~v~~---dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ 233 (311)
T KOG0315|consen 162 LI-----PEDDTSIQSLTVMP---DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC 233 (311)
T ss_pred cC-----CCCCcceeeEEEcC---CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence 43 23346799999999 89999999999999999999888788888889999999999999999999977 68
Q ss_pred ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 332 s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
|.|.+ ||+..+- . .....+.+|.. .+|..+||. ++.+|++|+.|+.+ |+|+++....+
T Consensus 234 ssdktv~iwn~~~~-~-------------kle~~l~gh~r-WvWdc~FS~-dg~YlvTassd~~~-rlW~~~~~k~v 293 (311)
T KOG0315|consen 234 SSDKTVKIWNTDDF-F-------------KLELVLTGHQR-WVWDCAFSA-DGEYLVTASSDHTA-RLWDLSAGKEV 293 (311)
T ss_pred cCCceEEEEecCCc-e-------------eeEEEeecCCc-eEEeeeecc-CccEEEecCCCCce-eecccccCcee
Confidence 88886 8988753 1 12345667776 999999999 67789999999997 99998865433
No 27
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.1e-26 Score=253.07 Aligned_cols=284 Identities=21% Similarity=0.336 Sum_probs=230.4
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+++|++|.+.|++++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~------------------------------- 50 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGH------------------------------- 50 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecC-------------------------------
Confidence 5678899999999999999999999999999999999876544443311
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
...+..+.|+++++ ++++++.++.+ +||..+++. +.....
T Consensus 51 ------------------------------------~~~i~~~~~~~~~~-~l~~~~~~~~i~i~~~~~~~~--~~~~~~ 91 (289)
T cd00200 51 ------------------------------------TGPVRDVAASADGT-YLASGSSDKTIRLWDLETGEC--VRTLTG 91 (289)
T ss_pred ------------------------------------CcceeEEEECCCCC-EEEEEcCCCeEEEEEcCcccc--eEEEec
Confidence 23456778889886 77888877777 668876532 334567
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|...|.++.| ++++.++++++.|+.|++||+.+++....+. .|...+.++. +++++.++++++.|+.|++|
T Consensus 92 ~~~~i~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 92 HTSYVSSVAF-----SPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVA---FSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred cCCcEEEEEE-----cCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEE---EcCcCCEEEEEcCCCcEEEE
Confidence 7889999999 5678888888889999999999888888887 8999999997 67888899988889999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
|+++++.... +..|...|.++.|+| ++..+++++.|+.|++||+++++.+.. +..|...+.++.|
T Consensus 163 d~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~l~~~~~~~~i~i~d~~~~~~~~~------~~~~~~~i~~~~~ 227 (289)
T cd00200 163 DLRTGKCVAT------LTGHTGEVNSVAFSP---DGEKLLSSSSDGTIKLWDLSTGKCLGT------LRGHENGVNSVAF 227 (289)
T ss_pred Ecccccccee------EecCccccceEEECC---CcCEEEEecCCCcEEEEECCCCceecc------hhhcCCceEEEEE
Confidence 9997775544 467888999999999 778899999999999999998877665 4578889999999
Q ss_pred CCCCCEEEEe-cCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 323 APNLDILTCV-KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 323 spdg~iLs~s-~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
+|++.+++++ .|+. +|++.++. ....+..|.. .|.+++|++ ++.++++++.||.+ ++|+
T Consensus 228 ~~~~~~~~~~~~~~~i~i~~~~~~~---------------~~~~~~~~~~-~i~~~~~~~-~~~~l~~~~~d~~i-~iw~ 289 (289)
T cd00200 228 SPDGYLLASGSEDGTIRVWDLRTGE---------------CVQTLSGHTN-SVTSLAWSP-DGKRLASGSADGTI-RIWD 289 (289)
T ss_pred cCCCcEEEEEcCCCcEEEEEcCCce---------------eEEEccccCC-cEEEEEECC-CCCEEEEecCCCeE-EecC
Confidence 9998877555 4886 79987542 2334445555 799999999 46779999999997 7995
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.96 E-value=5.8e-27 Score=251.03 Aligned_cols=251 Identities=16% Similarity=0.266 Sum_probs=205.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
++.|.||+..|..++.++||++.++++.|+++++||+.+|+..+.|..|
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH------------------------------- 104 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGH------------------------------- 104 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEec-------------------------------
Confidence 6889999999999999999999999999999999999998777766622
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
...|.+++|++|.+ .+++|+.|+++ .||.... ++.......
T Consensus 105 ------------------------------------~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~-ck~t~~~~~ 146 (315)
T KOG0279|consen 105 ------------------------------------TKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV-CKYTIHEDS 146 (315)
T ss_pred ------------------------------------CCceEEEEecCCCc-eeecCCCcceeeeeeeccc-EEEEEecCC
Confidence 44588899999997 89999999999 5677654 332222233
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
+.+.|.|+.|+| +++..+|++++.|++|++||+++.+....+. ||+++++.+. ++|||.++++|+.||.+.+|
T Consensus 147 ~~~WVscvrfsP---~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~---vSpDGslcasGgkdg~~~Lw 219 (315)
T KOG0279|consen 147 HREWVSCVRFSP---NESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVT---VSPDGSLCASGGKDGEAMLW 219 (315)
T ss_pred CcCcEEEEEEcC---CCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEE---ECCCCCEEecCCCCceEEEE
Confidence 488999999977 3458899999999999999999988888887 9999999997 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccc---ccCCceeE
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA---CHSVASWC 319 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~---~H~~~V~s 319 (1339)
|++.++++.. .+|...|++++|+| .++.++...+..|+|||+.++.++..+++...-. .......+
T Consensus 220 dL~~~k~lys-------l~a~~~v~sl~fsp----nrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 220 DLNEGKNLYS-------LEAFDIVNSLCFSP----NRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred EccCCceeEe-------ccCCCeEeeEEecC----CceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 9999987654 56889999999999 4566677777789999999999888765432111 11223458
Q ss_pred EEeCCCCCEE-EEecCCe--EEEcc
Q 000709 320 HPRAPNLDIL-TCVKDSH--IWAIE 341 (1339)
Q Consensus 320 vafspdg~iL-s~s~Dg~--LWDi~ 341 (1339)
++|++||..| ++-.|+. +|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999955 5656763 78765
No 29
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4e-28 Score=264.36 Aligned_cols=277 Identities=20% Similarity=0.345 Sum_probs=233.5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEE
Q 000709 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 10 Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
....|.|+.+. ...+++|..|++|+|||..+..+++.+. +|.+.+.++.-+.+.+++|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd~rviisGS------------------ 254 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYDERVIVSGS------------------ 254 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeeccceEEEecC------------------
Confidence 45689999986 4479999999999999999989988887 78899999998888999987
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce-eeccccccCCCCe
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKSL 167 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~-~~v~~~~~h~~~V 167 (1339)
.|.+|++||+++++++ .+..+| ...|..+.|+. | ++++++.|..+ +||+.+..- .....+.+|...|
T Consensus 255 ---SDsTvrvWDv~tge~l----~tlihH-ceaVLhlrf~n-g--~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 255 ---SDSTVRVWDVNTGEPL----NTLIHH-CEAVLHLRFSN-G--YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred ---CCceEEEEeccCCchh----hHHhhh-cceeEEEEEeC-C--EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 6889999999999987 455555 78899999975 3 89999999999 788766432 1223457899999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg 247 (1339)
+.+.| +.++|+++|.|.+|++|++.++++++++. +|...|-|+. + .+++++|||.|.+|++||+..|
T Consensus 324 NvVdf-------d~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQ-Y----r~rlvVSGSSDntIRlwdi~~G 390 (499)
T KOG0281|consen 324 NVVDF-------DDKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQ-Y----RDRLVVSGSSDNTIRLWDIECG 390 (499)
T ss_pred eeecc-------ccceEEEecCCceEEEEeccceeeehhhh-cccccceehh-c----cCeEEEecCCCceEEEEecccc
Confidence 99999 67899999999999999999999999997 9999999997 2 7899999999999999999999
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe---cCCCcccccCCceeEEEeCC
Q 000709 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI---KPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~---~~~~~l~~H~~~V~svafsp 324 (1339)
.+++. +.||+.-|.++.|.. ..|++|+.||+|++||+..+...+.. -+...+..|++.|..+.|..
T Consensus 391 ~cLRv------LeGHEeLvRciRFd~-----krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~ 459 (499)
T KOG0281|consen 391 ACLRV------LEGHEELVRCIRFDN-----KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE 459 (499)
T ss_pred HHHHH------HhchHHhhhheeecC-----ceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc
Confidence 98775 799999999999964 79999999999999999876533221 12234678999999999954
Q ss_pred CCCEEEEecCCe--EEEccCC
Q 000709 325 NLDILTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 325 dg~iLs~s~Dg~--LWDi~t~ 343 (1339)
-++++++.|.+ |||+.++
T Consensus 460 -fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 460 -FQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred -eEEEeccCCCeEEEEEcCCC
Confidence 34888888887 7999865
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=9.9e-26 Score=275.54 Aligned_cols=288 Identities=23% Similarity=0.354 Sum_probs=234.3
Q ss_pred eEEecCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE--EEEEeccCccceEEeccccceeEeeccccCCCccc
Q 000709 4 LKAFRPT-NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 4 l~~L~gH-s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~--l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~ 80 (1339)
...+.+| ...|.|+.|+++|+++++++.|+.+++|+..+++. +++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------------------- 198 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE-------------------------------- 198 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc--------------------------------
Confidence 4556565 78999999999999999999999999999865431 111
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
..+ |...|++++|+|+++ ++++++.|+.+ +||... ....+..
T Consensus 199 ----------------------------------l~~-h~~~v~~~~fs~d~~-~l~s~s~D~tiriwd~~~-~~~~~~~ 241 (456)
T KOG0266|consen 199 ----------------------------------LSG-HTRGVSDVAFSPDGS-YLLSGSDDKTLRIWDLKD-DGRNLKT 241 (456)
T ss_pred ----------------------------------ccc-cccceeeeEECCCCc-EEEEecCCceEEEeeccC-CCeEEEE
Confidence 122 266799999999998 99999999999 568833 2345667
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
+.+|...|+|++| +|+++++++|+.|++|+|||+++++++..+. +|.+.|++++ |++++++|++++.|+.|
T Consensus 242 l~gH~~~v~~~~f-----~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~---f~~d~~~l~s~s~d~~i 312 (456)
T KOG0266|consen 242 LKGHSTYVTSVAF-----SPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLA---FSPDGNLLVSASYDGTI 312 (456)
T ss_pred ecCCCCceEEEEe-----cCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEE---ECCCCCEEEEcCCCccE
Confidence 8899999999999 6789999999999999999999999999998 9999999997 89999999999999999
Q ss_pred EEEeCCCCC--ccceecccccccccccc--eEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC
Q 000709 240 ILWSADHGQ--DSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 240 rVWDl~tg~--~~~~~~~~~~l~gH~~~--V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1339)
++||+.++. +... +.++... ++++.|+| ++.+|++++.|+.+++||+..+.+...+ .+|..
T Consensus 313 ~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~fsp---~~~~ll~~~~d~~~~~w~l~~~~~~~~~------~~~~~ 377 (456)
T KOG0266|consen 313 RVWDLETGSKLCLKL------LSGAENSAPVTSVQFSP---NGKYLLSASLDRTLKLWDLRSGKSVGTY------TGHSN 377 (456)
T ss_pred EEEECCCCceeeeec------ccCCCCCCceeEEEECC---CCcEEEEecCCCeEEEEEccCCcceeee------cccCC
Confidence 999999988 3333 4555554 99999999 8999999999999999999999988874 55655
Q ss_pred c---eeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEE
Q 000709 316 A---SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1339)
Q Consensus 316 ~---V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs 389 (1339)
. +.+...++.+.++ +++.|+. +|++.++. ....+.+|....+..+.++| ..+++++++
T Consensus 378 ~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---------------~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s 441 (456)
T KOG0266|consen 378 LVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---------------ILQRLEGHSKAAVSDLSSHP-TENLIASSS 441 (456)
T ss_pred cceeEecccccCCCCeEEEEeCCceEEEEeCCccc---------------hhhhhcCCCCCceeccccCC-CcCeeeecC
Confidence 4 3344456777755 7889996 79998642 23455566333789999999 677888888
Q ss_pred --CCCeEEEEecCC
Q 000709 390 --NVGVIISEFDPR 401 (1339)
Q Consensus 390 --~DG~IlriWd~~ 401 (1339)
.|+.+ ++|...
T Consensus 442 ~~~d~~~-~~w~~~ 454 (456)
T KOG0266|consen 442 FEGDGLI-RLWKYD 454 (456)
T ss_pred cCCCceE-EEecCC
Confidence 78887 799643
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=242.14 Aligned_cols=285 Identities=19% Similarity=0.244 Sum_probs=233.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNW-EHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl-~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
+..+.||.+.|+++.|+|+|.+||||+.|..|.+|++ ...+....++ +|...|.-+. .++..+++++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lk-gHsgAVM~l~~~~d~s~i~S~g--------- 109 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLK-GHSGAVMELHGMRDGSHILSCG--------- 109 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeec-cccceeEeeeeccCCCEEEEec---------
Confidence 4567899999999999999999999999999999995 4445555666 6677777666 7777777776
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
.|.+++.||..+++++ ....+| .+.|+++.-+..|..++.++++|+++ +||.++..... +
T Consensus 110 ------------tDk~v~~wD~~tG~~~----rk~k~h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~--t 170 (338)
T KOG0265|consen 110 ------------TDKTVRGWDAETGKRI----RKHKGH-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK--T 170 (338)
T ss_pred ------------CCceEEEEecccceee----ehhccc-cceeeecCccccCCeEEEecCCCceEEEEeecccchhh--c
Confidence 5889999999999887 344555 88899999777888899999999999 55998754322 1
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
....-.++++.| ..++..+.+|+-|+.|++||++.......+. ||.+.|+.+. .+++|.++.+-+.|.+|
T Consensus 171 -~~~kyqltAv~f-----~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~ls---ls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 171 -FENKYQLTAVGF-----KDTSDQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLS---LSRYGSFLLSNSMDNTV 240 (338)
T ss_pred -cccceeEEEEEe-----cccccceeeccccCceeeeccccCcceEEee-cccCceeeEE---eccCCCccccccccceE
Confidence 223557899999 6788899999999999999999999988887 9999999996 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccc----cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHD----GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~----~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1339)
++||++--..... +...+.+|. .....++|+| ++..+-.|+.|+.+++||......+.. +.||.+
T Consensus 241 rvwd~rp~~p~~R--~v~if~g~~hnfeknlL~cswsp---~~~~i~ags~dr~vyvwd~~~r~~lyk------lpGh~g 309 (338)
T KOG0265|consen 241 RVWDVRPFAPSQR--CVKIFQGHIHNFEKNLLKCSWSP---NGTKITAGSADRFVYVWDTTSRRILYK------LPGHYG 309 (338)
T ss_pred EEEEecccCCCCc--eEEEeecchhhhhhhcceeeccC---CCCccccccccceEEEeecccccEEEE------cCCcce
Confidence 9999985432221 112234443 2356788999 889999999999999999987776665 799999
Q ss_pred ceeEEEeCCCCCEE-EEecCCeEE
Q 000709 316 ASWCHPRAPNLDIL-TCVKDSHIW 338 (1339)
Q Consensus 316 ~V~svafspdg~iL-s~s~Dg~LW 338 (1339)
.|.++.|+|...+| +|+.|.+||
T Consensus 310 svn~~~Fhp~e~iils~~sdk~i~ 333 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCSSDKTIY 333 (338)
T ss_pred eEEEeeecCCCcEEEEeccCceeE
Confidence 99999999998865 899999876
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.94 E-value=6.4e-26 Score=271.41 Aligned_cols=208 Identities=22% Similarity=0.394 Sum_probs=184.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
.++|.||++.|..+.|+|+.++|++++.|++||+|.+.+..++-.++ +|
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH------------------------------ 492 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GH------------------------------ 492 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CC------------------------------
Confidence 46799999999999999999999999999999999999877766665 22
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
..+|+++.|+|.|- ++++++.|++. .|..... .....+.+
T Consensus 493 ------------------------------------~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~~--~PlRifag 533 (707)
T KOG0263|consen 493 ------------------------------------LAPVWDVQFAPRGY-YFATASHDQTARLWSTDHN--KPLRIFAG 533 (707)
T ss_pred ------------------------------------CcceeeEEecCCce-EEEecCCCceeeeeecccC--Cchhhhcc
Confidence 45678888999995 99999999999 5544333 23556789
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|...|.|+.|| |+..|+++||.|.+||+||+.+|..++.|. ||.++|.+++ ++|+|++|++|+.||.|++|
T Consensus 534 hlsDV~cv~FH-----PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~---~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 534 HLSDVDCVSFH-----PNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALA---FSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred cccccceEEEC-----CcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEE---EcCCCceEeecccCCcEEEE
Confidence 99999999995 689999999999999999999999999997 9999999998 89999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
|+.++..+.. +.+|.+.|.++.|+. ++..|++||.|++|++||+..-.
T Consensus 605 Dl~~~~~v~~------l~~Ht~ti~SlsFS~---dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 605 DLANGSLVKQ------LKGHTGTIYSLSFSR---DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred EcCCCcchhh------hhcccCceeEEEEec---CCCEEEecCCCCeEEEEEchhhc
Confidence 9999987665 789999999999999 89999999999999999987533
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.1e-24 Score=284.44 Aligned_cols=305 Identities=15% Similarity=0.204 Sum_probs=223.9
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCC
Q 000709 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGG 85 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g 85 (1339)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||..+.. .... .. . .
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~-----~~~~-~~--------~-------------------~ 524 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESII-----KDGR-DI--------H-------------------Y 524 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccc-----cccc-cc--------c-------------------c
Confidence 355699999999999999999999999999999976410 0000 00 0 0
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCC
Q 000709 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN 164 (1339)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~ 164 (1339)
++ ....+ ...+.+++|++....+|++++.|+.+ +||..+++. +.....|.
T Consensus 525 ~~--------------------------~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~--~~~~~~H~ 575 (793)
T PLN00181 525 PV--------------------------VELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL--VTEMKEHE 575 (793)
T ss_pred ce--------------------------EEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE--EEEecCCC
Confidence 00 00001 33577888987644589999999999 679887643 44567899
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl 244 (1339)
..|++++|+| +++.+|++|+.||+|++||++++..+..+. . ...|.++.| .++++.+|++|+.||+|++||+
T Consensus 576 ~~V~~l~~~p----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-~-~~~v~~v~~--~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 576 KRVWSIDYSS----ADPTLLASGSDDGSVKLWSINQGVSIGTIK-T-KANICCVQF--PSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCEEEEEEcC----CCCCEEEEEcCCCEEEEEECCCCcEEEEEe-c-CCCeEEEEE--eCCCCCEEEEEeCCCeEEEEEC
Confidence 9999999942 378899999999999999999998888875 3 467888873 4678999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC------eeEEEecCCCcccccCCcee
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF------KELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~------~~l~~~~~~~~l~~H~~~V~ 318 (1339)
++... +...+.+|...|.++.|.+ +.+|++++.|++|++||+..+ .+++. +.+|...+.
T Consensus 648 ~~~~~-----~~~~~~~h~~~V~~v~f~~----~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~------~~gh~~~i~ 712 (793)
T PLN00181 648 RNPKL-----PLCTMIGHSKTVSYVRFVD----SSTLVSSSTDNTLKLWDLSMSISGINETPLHS------FMGHTNVKN 712 (793)
T ss_pred CCCCc-----cceEecCCCCCEEEEEEeC----CCEEEEEECCCEEEEEeCCCCccccCCcceEE------EcCCCCCee
Confidence 87642 1233678999999999974 679999999999999999753 33443 678999999
Q ss_pred EEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 319 CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 319 svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
++.|++++.+| +|+.|++ +|+....... ..... .............+.. .|.+++|+| ++..|++|+.||.|
T Consensus 713 ~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~-~s~~~-~~~~~~~~~~~~~~~~-~V~~v~ws~-~~~~lva~~~dG~I- 787 (793)
T PLN00181 713 FVGLSVSDGYIATGSETNEVFVYHKAFPMPV-LSYKF-KTIDPVSGLEVDDASQ-FISSVCWRG-QSSTLVAANSTGNI- 787 (793)
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEECCCCCce-EEEec-ccCCcccccccCCCCc-EEEEEEEcC-CCCeEEEecCCCcE-
Confidence 99999998866 6788986 7987643110 00000 0000000111222333 799999999 56779999999997
Q ss_pred EEecC
Q 000709 396 SEFDP 400 (1339)
Q Consensus 396 riWd~ 400 (1339)
++|++
T Consensus 788 ~i~~~ 792 (793)
T PLN00181 788 KILEM 792 (793)
T ss_pred EEEec
Confidence 89985
No 34
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3e-24 Score=253.52 Aligned_cols=357 Identities=16% Similarity=0.252 Sum_probs=264.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccC--------
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHK-------- 75 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~-------- 75 (1339)
+-.|+||.+.|+..-|..+.++|++.+.|+.|++||+++..|..+.- .|...++.++-+...++++..+..
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thv-d~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~ 220 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHV-DHRGEIWALVLDEKLLVTAGTDSELKVWELAF 220 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEe-cccceEEEEEEecceEEEEecCCceEEEEeec
Confidence 45789999999999999988999999999999999999999887766 455666665533344433332221
Q ss_pred ------------------------CCccccccC-----------------------------------------------
Q 000709 76 ------------------------GKPTEAMRG----------------------------------------------- 84 (1339)
Q Consensus 76 ------------------------gk~~~~l~~----------------------------------------------- 84 (1339)
++.+.+...
T Consensus 221 ~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~ 300 (888)
T KOG0306|consen 221 EDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENE 300 (888)
T ss_pred ccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccc
Confidence 000000000
Q ss_pred --------------------CceEEEEE-------------cCCeEEEEEcCCccccc----cccccccccCCCCeeeee
Q 000709 85 --------------------GSVKQVNF-------------YDDDVRFWQLWRNRAAA----AEAPTAVSNVTSGFASPP 127 (1339)
Q Consensus 85 --------------------g~V~sVaF-------------~Dg~IrlWDl~~~~~l~----~~~~~~~~~~~~~V~sla 127 (1339)
..+.++.+ .+.++..+.+....... .......+.|...|++++
T Consensus 301 ~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~ 380 (888)
T KOG0306|consen 301 DDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLC 380 (888)
T ss_pred cchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEE
Confidence 11222222 23344444433311100 001123344588899999
Q ss_pred eCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000709 128 PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1339)
Q Consensus 128 fspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l 207 (1339)
||.+.. ++++|+.+.+++|+..+.+|.. .....++.|..| -|.++++++|...|.+.+||+.+...+.++
T Consensus 381 vS~d~~-~~~Sga~~SikiWn~~t~kciR----Ti~~~y~l~~~F-----vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti 450 (888)
T KOG0306|consen 381 VSSDSI-LLASGAGESIKIWNRDTLKCIR----TITCGYILASKF-----VPGDRYIVLGTKNGELQVFDLASASLVETI 450 (888)
T ss_pred eecCce-eeeecCCCcEEEEEccCcceeE----EeccccEEEEEe-----cCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence 999986 8888888999999999887633 233449999999 567999999999999999999999988888
Q ss_pred ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-----CCccc--eecccccccccccceEEEEeeccCCCCCE
Q 000709 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-----GQDSR--ELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1339)
Q Consensus 208 ~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t-----g~~~~--~~~~~~~l~gH~~~V~svafsp~~~dg~~ 280 (1339)
. +|.+.|++++ .+||+..+++||.|.+|++||..- |...+ .+....++. -...|.|+.++| |+.+
T Consensus 451 ~-AHdgaIWsi~---~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp---dgk~ 522 (888)
T KOG0306|consen 451 R-AHDGAIWSIS---LSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP---DGKL 522 (888)
T ss_pred h-ccccceeeee---ecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC---CCcE
Confidence 7 9999999998 899999999999999999999742 11111 111112222 346799999999 8999
Q ss_pred EEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCE-EEEecCCe--EEEccCCcccccccCccccCC
Q 000709 281 LITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSS 357 (1339)
Q Consensus 281 LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~ 357 (1339)
|+.+=-|++|+||-+.+.+..-+ +.||.-+|.|+..+||+.+ ++||.|.. ||-++-+.+
T Consensus 523 LaVsLLdnTVkVyflDtlKFfls------LYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDC------------ 584 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLS------LYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC------------ 584 (888)
T ss_pred EEEEeccCeEEEEEecceeeeee------ecccccceeEEeccCCcCeEEeccCCCceEEeccccchh------------
Confidence 99999999999999988775554 7999999999999999995 48998985 898886532
Q ss_pred CCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 358 LVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 358 ~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
-..+..|.+ .|.++.|-| ..+++++++.||.| +-||....
T Consensus 585 ---HKS~fAHdD-Svm~V~F~P-~~~~FFt~gKD~kv-KqWDg~kF 624 (888)
T KOG0306|consen 585 ---HKSFFAHDD-SVMSVQFLP-KTHLFFTCGKDGKV-KQWDGEKF 624 (888)
T ss_pred ---hhhhhcccC-ceeEEEEcc-cceeEEEecCcceE-Eeechhhh
Confidence 345667777 899999999 78889999999997 89986643
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.94 E-value=4.8e-25 Score=249.66 Aligned_cols=276 Identities=16% Similarity=0.179 Sum_probs=223.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
..|++++|+.+|..||+|+.||.++||+. +|.++.++. .|...|+.+. .+|.+|++++
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~-~HkgPI~slKWnk~G~yilS~~------------------ 295 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLG-QHKGPIFSLKWNKKGTYILSGG------------------ 295 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhhhh-ccCCceEEEEEcCCCCEEEecc------------------
Confidence 57999999999999999999999999995 577788887 4567788877 6778888876
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeE
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLV 168 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~ 168 (1339)
-|+++.+||..+++..+ ....| ...-..+.|-.+.. +++++.|+.+++ -+... ..+.++.+|.+.|.
T Consensus 296 ---vD~ttilwd~~~g~~~q----~f~~~-s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~ 363 (524)
T KOG0273|consen 296 ---VDGTTILWDAHTGTVKQ----QFEFH-SAPALDVDWQSNDE--FATSSTDGCIHVCKVGED--RPVKTFIGHHGEVN 363 (524)
T ss_pred ---CCccEEEEeccCceEEE----eeeec-cCCccceEEecCce--EeecCCCceEEEEEecCC--CcceeeecccCceE
Confidence 58999999998887753 22222 33335677877664 688888888755 33221 34566788999999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEee------eCCCCCEEEEEeCCCcEEEE
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM------ASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~------~spdg~~LaSgS~DgtVrVW 242 (1339)
++.| .|.+.+|+++|+|++++||++....+...+. +|...|+.+.|.. .+..+..+++++.|++|++|
T Consensus 364 alk~-----n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 364 ALKW-----NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred EEEE-----CCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE
Confidence 9999 7789999999999999999999888888887 9999999998642 12235689999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
|+..+.+++. +..|..+|++++|+| +++++++|+.||.|.+|++++++.++.+ ...+.|..++|
T Consensus 438 dv~~gv~i~~------f~kH~~pVysvafS~---~g~ylAsGs~dg~V~iws~~~~~l~~s~-------~~~~~Ifel~W 501 (524)
T KOG0273|consen 438 DVESGVPIHT------LMKHQEPVYSVAFSP---NGRYLASGSLDGCVHIWSTKTGKLVKSY-------QGTGGIFELCW 501 (524)
T ss_pred EccCCceeEe------eccCCCceEEEEecC---CCcEEEecCCCCeeEeccccchheeEee-------cCCCeEEEEEE
Confidence 9999987765 688999999999999 8999999999999999999999988873 34556899999
Q ss_pred CCCCCEE-EEecCCe--EEEcc
Q 000709 323 APNLDIL-TCVKDSH--IWAIE 341 (1339)
Q Consensus 323 spdg~iL-s~s~Dg~--LWDi~ 341 (1339)
+-+|..| ++-.|+. +-|++
T Consensus 502 n~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 502 NAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCEEEEEecCCCceEEEec
Confidence 9999877 4556764 44443
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.94 E-value=3.6e-26 Score=249.21 Aligned_cols=263 Identities=18% Similarity=0.258 Sum_probs=216.6
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
.|.+|++||.++..|. ..+.+| ++.|.|+.|.. + ++++|+.|.++ +||+++++. +.....|.+.|..+.
T Consensus 215 rDnTikiWD~n~~~c~----~~L~GH-tGSVLCLqyd~--r-viisGSSDsTvrvWDv~tge~--l~tlihHceaVLhlr 284 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECL----KILTGH-TGSVLCLQYDE--R-VIVSGSSDSTVRVWDVNTGEP--LNTLIHHCEAVLHLR 284 (499)
T ss_pred ccCceEEeccccHHHH----HhhhcC-CCcEEeeeccc--e-EEEecCCCceEEEEeccCCch--hhHHhhhcceeEEEE
Confidence 6889999999999886 566777 88999999864 3 89999999998 679999865 667889999999999
Q ss_pred EeeccccCCCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL---VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 172 f~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~---i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
| ...+++++|.|.+|.+||+.+..- .+.+. ||...|+.+. | +.++++++|.|++|++|++.++.
T Consensus 285 f-------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVd---f--d~kyIVsASgDRTikvW~~st~e 351 (499)
T KOG0281|consen 285 F-------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVD---F--DDKYIVSASGDRTIKVWSTSTCE 351 (499)
T ss_pred E-------eCCEEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeec---c--ccceEEEecCCceEEEEecccee
Confidence 9 477999999999999999986532 23344 9999999997 2 56699999999999999999999
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCE
Q 000709 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI 328 (1339)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~i 328 (1339)
+++. +.+|..+|-|+.+. ++++++||.|.+|++||+..|.+++. +.||..-|.|+.|.. .++
T Consensus 352 fvRt------l~gHkRGIAClQYr-----~rlvVSGSSDntIRlwdi~~G~cLRv------LeGHEeLvRciRFd~-krI 413 (499)
T KOG0281|consen 352 FVRT------LNGHKRGIACLQYR-----DRLVVSGSSDNTIRLWDIECGACLRV------LEGHEELVRCIRFDN-KRI 413 (499)
T ss_pred eehh------hhcccccceehhcc-----CeEEEecCCCceEEEEeccccHHHHH------HhchHHhhhheeecC-cee
Confidence 8775 79999999999985 58999999999999999999999887 789999999999964 458
Q ss_pred EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 329 LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 329 Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
++|+.||+ |||+..+.- .....+..++.++..|.. +|..+.|.. ..+++++.|.+|+ +||....++.
T Consensus 414 VSGaYDGkikvWdl~aald------pra~~~~~Cl~~lv~hsg-RVFrLQFD~---fqIvsssHddtIL-iWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALD------PRAPASTLCLRTLVEHSG-RVFRLQFDE---FQIISSSHDDTIL-IWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccC------CcccccchHHHhhhhccc-eeEEEeecc---eEEEeccCCCeEE-EEEcCCCCcc
Confidence 89999997 899986521 112222334556666776 899999965 5678888888874 9998876655
Q ss_pred c
Q 000709 407 A 407 (1339)
Q Consensus 407 ~ 407 (1339)
.
T Consensus 483 ~ 483 (499)
T KOG0281|consen 483 A 483 (499)
T ss_pred c
Confidence 3
No 37
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=6.2e-26 Score=258.07 Aligned_cols=286 Identities=15% Similarity=0.209 Sum_probs=236.1
Q ss_pred eEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCccceEEec--cccceeEeeccccCCCcc
Q 000709 4 LKAFRPTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSP-dg~~LaSgs~DGtIrIWDl~t-g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~ 79 (1339)
++++.||+..|+++.|.| .+.+|++++.|+.|+|||+.. +.++++|. +|...|..+. .++..+.+++
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~s-------- 277 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSAS-------- 277 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeee--------
Confidence 789999999999999999 888999999999999999876 89999998 6666666665 6677777665
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~ 158 (1339)
.|+.+++||+++|+++. ..+....++|+.|+|++++.+++|+.|+.| .||+++++. +.
T Consensus 278 -------------fD~~lKlwDtETG~~~~------~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vq 336 (503)
T KOG0282|consen 278 -------------FDRFLKLWDTETGQVLS------RFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQ 336 (503)
T ss_pred -------------cceeeeeeccccceEEE------EEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HH
Confidence 59999999999998863 333356788999999996677777766666 789999864 44
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
....|-+.|..+.| -++|.++++.++|++++||+.+..-.++.+...+.....|+. .+|++.+++.=+.|+.
T Consensus 337 eYd~hLg~i~~i~F-----~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~---~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 337 EYDRHLGAILDITF-----VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT---LHPNGKWFAAQSMDNY 408 (503)
T ss_pred HHHhhhhheeeeEE-----ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee---cCCCCCeehhhccCce
Confidence 56778899999999 468999999999999999999988777666545556677776 7999999999999999
Q ss_pred EEEEeCCCCCccceecccccccccc--cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHD--GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~--~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
|.++.+...-.. .....+.||. +.-..+.|+| |+.+|++|+.||.+.+||.++.+.+.. +..|...
T Consensus 409 i~ifs~~~~~r~---nkkK~feGh~vaGys~~v~fSp---DG~~l~SGdsdG~v~~wdwkt~kl~~~------lkah~~~ 476 (503)
T KOG0282|consen 409 IAIFSTVPPFRL---NKKKRFEGHSVAGYSCQVDFSP---DGRTLCSGDSDGKVNFWDWKTTKLVSK------LKAHDQP 476 (503)
T ss_pred EEEEeccccccc---CHhhhhcceeccCceeeEEEcC---CCCeEEeecCCccEEEeechhhhhhhc------cccCCcc
Confidence 999987643322 1234467886 3456789999 899999999999999999998887766 6899999
Q ss_pred eeEEEeCCCCC--EEEEecCCe--EEE
Q 000709 317 SWCHPRAPNLD--ILTCVKDSH--IWA 339 (1339)
Q Consensus 317 V~svafspdg~--iLs~s~Dg~--LWD 339 (1339)
+..+.|+|... +++||.||. +|+
T Consensus 477 ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 477 CIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEEEecCCCcceeEecccCceeEecC
Confidence 99999999854 779999996 685
No 38
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.94 E-value=2e-24 Score=232.57 Aligned_cols=243 Identities=19% Similarity=0.266 Sum_probs=201.1
Q ss_pred cccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 114 ~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
.+.+| ...|.++.|++|.+ .+++++.||.+ +||..+.+. +........+|..++| +|.|+++++|+.|+.
T Consensus 50 ~LkGH-~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK--~haipl~s~WVMtCA~-----sPSg~~VAcGGLdN~ 120 (343)
T KOG0286|consen 50 TLKGH-LNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNK--VHAIPLPSSWVMTCAY-----SPSGNFVACGGLDNK 120 (343)
T ss_pred Eeccc-ccceeeeEecCCcC-eEEeeccCCeEEEEEcccccc--eeEEecCceeEEEEEE-----CCCCCeEEecCcCce
Confidence 34555 88999999999998 88888888766 888776543 2234566789999999 889999999999999
Q ss_pred EEEEECCCC------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000709 193 IRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1339)
Q Consensus 193 IrIWDl~t~------~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1339)
..||++.+. +..+.+. +|.+++.|+. |-. ...|+++|.|.++-+||+.+++.+.. +.||.+.|
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~-gHtgylScC~---f~d-D~~ilT~SGD~TCalWDie~g~~~~~------f~GH~gDV 189 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELA-GHTGYLSCCR---FLD-DNHILTGSGDMTCALWDIETGQQTQV------FHGHTGDV 189 (343)
T ss_pred eEEEecccccccccceeeeeec-CccceeEEEE---EcC-CCceEecCCCceEEEEEcccceEEEE------ecCCcccE
Confidence 999999854 3334454 9999999997 444 56888999999999999999987665 68999999
Q ss_pred EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEEccCC
Q 000709 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~--LWDi~t~ 343 (1339)
.++.++| .+++.+++|+-|+..++||++.+.+.++ +.+|...|.++.|.|+|. +.+|+.|++ +||++..
T Consensus 190 ~slsl~p--~~~ntFvSg~cD~~aklWD~R~~~c~qt------F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 190 MSLSLSP--SDGNTFVSGGCDKSAKLWDVRSGQCVQT------FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred EEEecCC--CCCCeEEecccccceeeeeccCcceeEe------ecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 9999999 4789999999999999999999999998 589999999999999998 668888885 9999864
Q ss_pred cccccccCccccCCCCCCeEEcc-CCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 344 TYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~tl~~-~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
. .+..+.. .....|++++||. .+.+|++|.+|..+ .+||.-
T Consensus 262 ~---------------~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c-~vWDtl 303 (343)
T KOG0286|consen 262 Q---------------ELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTC-NVWDTL 303 (343)
T ss_pred c---------------EEeeeccCcccCCceeEEEcc-cccEEEeeecCCce-eEeecc
Confidence 1 1222222 2234799999999 68889999999997 799854
No 39
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.7e-25 Score=246.75 Aligned_cols=249 Identities=16% Similarity=0.294 Sum_probs=216.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~t-g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
.+.|+||++.|..|+|+..|++|++++.|=.+++||..+ .++++.+. +|...+.++. |.+.++++++
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~-gh~h~vS~V~f~P~gd~ilS~s--------- 212 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLI-GHEHGVSSVFFLPLGDHILSCS--------- 212 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhc-CcccceeeEEEEecCCeeeecc---------
Confidence 467899999999999999999999999999999999987 45666665 5555666666 7788888876
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
.|.+|+.|++.++-|+ ..+.+| ...|..+..+.||. ++++|+.|..+ +|-..+++++. .
T Consensus 213 ------------rD~tik~We~~tg~cv----~t~~~h-~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~~k~--~ 272 (406)
T KOG0295|consen 213 ------------RDNTIKAWECDTGYCV----KTFPGH-SEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQCKA--E 272 (406)
T ss_pred ------------cccceeEEecccceeE----EeccCc-hHhEEEEEecCCee-EEEecCCCceEEEEEeccchhhh--h
Confidence 6889999999999997 456666 66999999999997 99999999999 56667765543 4
Q ss_pred cccCCCCeEEEEEeeccccC----------CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCE
Q 000709 160 QELDNKSLVCMEFLSRSAVG----------DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Sp----------dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~ 229 (1339)
+..|...|-|++|.|....| .++++.+++.|++|++||+.++.++.++. +|...|..++ |+|.|++
T Consensus 273 lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~a---f~p~Gky 348 (406)
T KOG0295|consen 273 LREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVA---FSPGGKY 348 (406)
T ss_pred hhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeE---EcCCCeE
Confidence 77899999999998864332 23699999999999999999999999998 9999999997 8999999
Q ss_pred EEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 230 LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
|+|+.+|+++++||+++++|.+. +..|..-|++++|+. +..+++||+-|.++++|..
T Consensus 349 i~ScaDDktlrvwdl~~~~cmk~------~~ah~hfvt~lDfh~---~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCMKT------LEAHEHFVTSLDFHK---TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEecCCcEEEEEeccceeeec------cCCCcceeEEEecCC---CCceEEeccccceeeeeec
Confidence 99999999999999999998876 578999999999998 7789999999999999975
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.9e-24 Score=225.03 Aligned_cols=282 Identities=14% Similarity=0.193 Sum_probs=233.1
Q ss_pred eeeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcc
Q 000709 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 2 L~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~ 79 (1339)
.+++.|.+|.+.|..+.|+-||+|.++++.|.+|++||...|.+++++.. |-.++.-+. .|...+++++
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G-------- 78 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG-------- 78 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC--------
Confidence 36788999999999999999999999999999999999999999999984 445555443 5666677665
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~ 158 (1339)
.|..+.+||+.+++.. +...+| ...|+.+.|+.+.. ++++|+.|..+ .||-++.....+.
T Consensus 79 -------------gDk~v~vwDV~TGkv~----Rr~rgH-~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 79 -------------GDKAVQVWDVNTGKVD----RRFRGH-LAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred -------------CCceEEEEEcccCeee----eecccc-cceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccc
Confidence 4889999999999876 455666 88999999999987 99999999999 6799888777777
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
.+....+.|.++.. .+..|++||.||++|.||++.|+...... .++|+|++ |+++++..+.++.|++
T Consensus 140 ildea~D~V~Si~v-------~~heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs---~s~d~nc~La~~l~st 206 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDV-------AEHEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVS---FSKDGNCSLASSLDST 206 (307)
T ss_pred hhhhhcCceeEEEe-------cccEEEeeccCCcEEEEEeecceeehhhc---CCcceeEE---ecCCCCEEEEeeccce
Confidence 77777889999998 57889999999999999999998766654 46899998 8999999999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEE--EEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVA--VELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~s--vafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
+++.|-.+|+.++. ++||...=.. ++++. ....+++||.||.|.+||+.+...+..+ ..|...
T Consensus 207 lrLlDk~tGklL~s------YkGhkn~eykldc~l~q---sdthV~sgSEDG~Vy~wdLvd~~~~sk~------~~~~~v 271 (307)
T KOG0316|consen 207 LRLLDKETGKLLKS------YKGHKNMEYKLDCCLNQ---SDTHVFSGSEDGKVYFWDLVDETQISKL------SVVSTV 271 (307)
T ss_pred eeecccchhHHHHH------hcccccceeeeeeeecc---cceeEEeccCCceEEEEEeccceeeeee------ccCCce
Confidence 99999999998775 6888765443 34444 5678999999999999999998887763 455544
Q ss_pred -eeEEEeCCCCC-EEEEecCCe-EEE
Q 000709 317 -SWCHPRAPNLD-ILTCVKDSH-IWA 339 (1339)
Q Consensus 317 -V~svafspdg~-iLs~s~Dg~-LWD 339 (1339)
|.++.++|... ++++...+. .|.
T Consensus 272 ~v~dl~~hp~~~~f~~A~~~~~~~~~ 297 (307)
T KOG0316|consen 272 IVTDLSCHPTMDDFITATGHGDLFWY 297 (307)
T ss_pred eEEeeecccCccceeEecCCceecee
Confidence 77999999855 555443333 564
No 41
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-25 Score=244.52 Aligned_cols=290 Identities=17% Similarity=0.205 Sum_probs=226.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
.+.|..|++.|+-+.||++|+||||++.|.+..||++..
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~----------------------------------------- 255 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY----------------------------------------- 255 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec-----------------------------------------
Confidence 467889999999999999999999999999999999763
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEe-cCcEEEEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs-~dg~I~wD~~t~~~~~v~~~~~ 162 (1339)
|+.+++. .+..+| ...|..+.||||.+ +|++|+ ++.+.+||..++.+... ....
T Consensus 256 ----------d~~~kl~------------~tlvgh-~~~V~yi~wSPDdr-yLlaCg~~e~~~lwDv~tgd~~~~-y~~~ 310 (519)
T KOG0293|consen 256 ----------DVHFKLK------------KTLVGH-SQPVSYIMWSPDDR-YLLACGFDEVLSLWDVDTGDLRHL-YPSG 310 (519)
T ss_pred ----------Ccceeee------------eeeecc-cCceEEEEECCCCC-eEEecCchHheeeccCCcchhhhh-cccC
Confidence 2222221 233444 66788899999998 555555 44555889999976543 2233
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
+...+.|++| .|||..+++|+.|+.|..||+.. ........-....|.+++ ..+||+++++.+.|..|+++
T Consensus 311 ~~~S~~sc~W-----~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dla---it~Dgk~vl~v~~d~~i~l~ 381 (519)
T KOG0293|consen 311 LGFSVSSCAW-----CPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLA---ITYDGKYVLLVTVDKKIRLY 381 (519)
T ss_pred cCCCcceeEE-----ccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEE---EcCCCcEEEEEecccceeee
Confidence 5688999999 67999999999999999999874 444455433446688887 79999999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc--eeEE
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA--SWCH 320 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~--V~sv 320 (1339)
+..+..+.. +.....+|++.+.+. +++++++.-.+..+++||+...+.++. ..||... +-.-
T Consensus 382 ~~e~~~dr~-------lise~~~its~~iS~---d~k~~LvnL~~qei~LWDl~e~~lv~k------Y~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 382 NREARVDRG-------LISEEQPITSFSISK---DGKLALVNLQDQEIHLWDLEENKLVRK------YFGHKQGHFIIRS 445 (519)
T ss_pred chhhhhhhc-------cccccCceeEEEEcC---CCcEEEEEcccCeeEEeecchhhHHHH------hhcccccceEEEe
Confidence 988765432 233456799999998 899999999999999999997776665 4666553 2233
Q ss_pred EeCCC-CCE-EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000709 321 PRAPN-LDI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1339)
Q Consensus 321 afspd-g~i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Ilr 396 (1339)
+|-.. ..+ ++||+|+. ||+..++ .++.++.+|.+ .|+|++|+|.++.++|++++||+| |
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sg---------------kll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtI-R 508 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISG---------------KLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTI-R 508 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCC---------------ceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeE-E
Confidence 44332 244 47899997 7988865 45788999998 899999999999999999999998 9
Q ss_pred EecCC
Q 000709 397 EFDPR 401 (1339)
Q Consensus 397 iWd~~ 401 (1339)
+|.+.
T Consensus 509 IWg~~ 513 (519)
T KOG0293|consen 509 IWGPS 513 (519)
T ss_pred EecCC
Confidence 99765
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=240.59 Aligned_cols=294 Identities=16% Similarity=0.229 Sum_probs=239.4
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceE
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
|..+-+-|..|||||+||++|+.||.|.|||+.+|+..+.++.-..
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------------------------------- 256 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------------------------------- 256 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----------------------------------
Confidence 4556788999999999999999999999999999987776652210
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc-ccCCCC
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-ELDNKS 166 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~-~~h~~~ 166 (1339)
|. .. -++..|.|+.|+.|.+ ++++|+.||.| +|.+.++.| +..+ ..|...
T Consensus 257 -----d~-------------------fM-Mmd~aVlci~FSRDsE-MlAsGsqDGkIKvWri~tG~C--lRrFdrAHtkG 308 (508)
T KOG0275|consen 257 -----DN-------------------FM-MMDDAVLCISFSRDSE-MLASGSQDGKIKVWRIETGQC--LRRFDRAHTKG 308 (508)
T ss_pred -----cc-------------------ee-ecccceEEEeecccHH-HhhccCcCCcEEEEEEecchH--HHHhhhhhccC
Confidence 00 01 1266799999999998 99999999999 789999876 3344 489999
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
|+|+.| |.|+..+++++.|.++|+.-+++|++++.+. ||..+|+... |.++|..++++|.||+|++|+..+
T Consensus 309 vt~l~F-----SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~---ft~dG~~iisaSsDgtvkvW~~Kt 379 (508)
T KOG0275|consen 309 VTCLSF-----SRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEAT---FTDDGHHIISASSDGTVKVWHGKT 379 (508)
T ss_pred eeEEEE-----ccCcchhhcccccceEEEeccccchhHHHhc-CccccccceE---EcCCCCeEEEecCCccEEEecCcc
Confidence 999999 8899999999999999999999999999998 9999999997 899999999999999999999999
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
..|+.++.+ .+.+-.|+++-.-| .+...++.+...++|.|.+++ |+.+++|... ....+...+...+|.|
T Consensus 380 teC~~Tfk~----~~~d~~vnsv~~~P--Knpeh~iVCNrsntv~imn~q-GQvVrsfsSG---kREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 380 TECLSTFKP----LGTDYPVNSVILLP--KNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSG---KREGGDFINAILSPKG 449 (508)
T ss_pred hhhhhhccC----CCCcccceeEEEcC--CCCceEEEEcCCCeEEEEecc-ceEEeeeccC---CccCCceEEEEecCCC
Confidence 999887643 34667899999888 467899999999999999987 6777776432 1223344577889999
Q ss_pred CEE-EEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 327 DIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 327 ~iL-s~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
.++ +.++|+.+|-+.... +....++.-|.+ .+.+++.|| ..+++|+-+.||.+ ++|.
T Consensus 450 ewiYcigED~vlYCF~~~s-------------G~LE~tl~VhEk-dvIGl~HHP-HqNllAsYsEDgll-KLWk 507 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLS-------------GKLERTLPVHEK-DVIGLTHHP-HQNLLASYSEDGLL-KLWK 507 (508)
T ss_pred cEEEEEccCcEEEEEEeec-------------Cceeeeeecccc-cccccccCc-ccchhhhhcccchh-hhcC
Confidence 977 678999876554221 122345556666 788999999 68889999999996 8995
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=1.9e-24 Score=239.58 Aligned_cols=284 Identities=19% Similarity=0.245 Sum_probs=229.2
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-----cccceeEeeccccCCCcccccc
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-----AKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-----~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
-|.++|.+|... +.+|+||++||.++|||.. |+++..+. +|.+.+..+. +....+++++
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas------------ 166 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSAS------------ 166 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEe-cCCcceeeeEEEecCCccceEEEec------------
Confidence 478889988887 7799999999999999964 88888887 5566655443 2222455554
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC-----------
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------- 151 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t----------- 151 (1339)
.|.++++|.++.++..........|| ...|-++...++|. .+++|+.|..+ +|+..+
T Consensus 167 ---------~Dqtl~Lw~~~~~~~~~~~~~~~~GH-k~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~ 235 (423)
T KOG0313|consen 167 ---------MDQTLRLWKWNVGENKVKALKVCRGH-KRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSN 235 (423)
T ss_pred ---------CCceEEEEEecCchhhhhHHhHhccc-ccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccch
Confidence 58899999998887654333444466 88999999999997 99999999999 676110
Q ss_pred ------------CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEE
Q 000709 152 ------------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM 219 (1339)
Q Consensus 152 ------------~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~ 219 (1339)
+....+....+|...|.++.| + +...+++++.|.+|+.||+.++.++..+. ....++|+.
T Consensus 236 ~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w-----~-d~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~ 307 (423)
T KOG0313|consen 236 RRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW-----S-DATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCIS 307 (423)
T ss_pred hhhhhhhhhhcccccCceEEecccccceeeEEE-----c-CCCceEeecccceEEEEEeecccceeeee--cCcceeEee
Confidence 001123345789999999999 3 47789999999999999999999988875 567888997
Q ss_pred EeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 220 wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
.++..++|++|+.|..|++||.+++.-. ....++.+|...|.++.|+| .+..+|++|+.|+++++||+++.+
T Consensus 308 ---~~~~~~Ll~~gssdr~irl~DPR~~~gs---~v~~s~~gH~nwVssvkwsp--~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 308 ---YSPLSKLLASGSSDRHIRLWDPRTGDGS---VVSQSLIGHKNWVSSVKWSP--TNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred ---cccccceeeecCCCCceeecCCCCCCCc---eeEEeeecchhhhhheecCC--CCceEEEEEecCCeEEEEEeccCC
Confidence 7889999999999999999999987532 23567899999999999999 477899999999999999999877
Q ss_pred -eEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEcc
Q 000709 300 -ELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1339)
Q Consensus 300 -~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~ 341 (1339)
++.. +.+|...|.++.|...+.+++||.|++|.-..
T Consensus 380 ~plyd------I~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 380 APLYD------IAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred Cccee------eccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 5555 68999999999999888899999999865443
No 44
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=6.1e-24 Score=250.96 Aligned_cols=283 Identities=19% Similarity=0.324 Sum_probs=236.5
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
-.+.||...|.+++||.+...++|| ..+.|+|||..+.++++++.++ .+.+.. |..++++.|.
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sg-a~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~----------- 431 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASG-AGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGT----------- 431 (888)
T ss_pred eeeccchhheeEEEeecCceeeeec-CCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEec-----------
Confidence 4678999999999999998888877 5678999999999999999865 222222 6777777765
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC-----Cceee
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT-----MRGRD 156 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t-----~~~~~ 156 (1339)
..|.+.++|+.....+ .... .|++.+++++.+||++ -+++|+.|.++ +||... +..+.
T Consensus 432 ----------k~Gel~vfdlaS~~l~----Eti~-AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k 495 (888)
T KOG0306|consen 432 ----------KNGELQVFDLASASLV----ETIR-AHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKK 495 (888)
T ss_pred ----------cCCceEEEEeehhhhh----hhhh-ccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccce
Confidence 5789999999887664 3334 4599999999999998 88999999999 666432 11111
Q ss_pred cccc-----ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000709 157 IPKQ-----ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1339)
Q Consensus 157 v~~~-----~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~La 231 (1339)
+... ..-.+.|.|+.+ ||||++++.+--|.+++||-+.+.+..-.+. ||.-+|.|+. .++|+++++
T Consensus 496 ~lsl~~~rtLel~ddvL~v~~-----Spdgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smD---IS~DSkliv 566 (888)
T KOG0306|consen 496 VLSLKHTRTLELEDDVLCVSV-----SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMD---ISPDSKLIV 566 (888)
T ss_pred eeeeccceEEeccccEEEEEE-----cCCCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEe---ccCCcCeEE
Confidence 1000 112678999999 8999999999999999999999999888887 9999999998 899999999
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccc
Q 000709 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1339)
Q Consensus 232 SgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~ 311 (1339)
|||.|+.|++|-++-|.|-+. +.+|++.|.++.|.| ...++.++|.|+.|+-||-...++++. +.
T Consensus 567 TgSADKnVKiWGLdFGDCHKS------~fAHdDSvm~V~F~P---~~~~FFt~gKD~kvKqWDg~kFe~iq~------L~ 631 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDCHKS------FFAHDDSVMSVQFLP---KTHLFFTCGKDGKVKQWDGEKFEEIQK------LD 631 (888)
T ss_pred eccCCCceEEeccccchhhhh------hhcccCceeEEEEcc---cceeEEEecCcceEEeechhhhhhhee------ec
Confidence 999999999999999988765 789999999999999 788999999999999999888887776 79
Q ss_pred ccCCceeEEEeCCCCCEE-EEecCCe--EEEccC
Q 000709 312 CHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1339)
Q Consensus 312 ~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t 342 (1339)
+|...|||++.+|+|.++ ++|.|.. +|....
T Consensus 632 ~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 632 GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999999865 7888875 787653
No 45
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=248.45 Aligned_cols=243 Identities=18% Similarity=0.208 Sum_probs=206.4
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
...|..+.|.|+|+ .|++|+..|.. .|+..+...+. ....|...|+++.| ++++.++++|+.+|.|++|+.
T Consensus 96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEt--ilQaHDs~Vr~m~w-----s~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFET--ILQAHDSPVRTMKW-----SHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHH--HhhhhcccceeEEE-----ccCCCEEEEcCCCceEEeccc
Confidence 56799999999998 78888888888 77775544332 35789999999999 889999999999999999997
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000709 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1339)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1339)
.. ..++.+...|...|.+++ |+|+...|++||.||+|+|||....+..+ .+.||.-.|.+++||| ..
T Consensus 168 nm-nnVk~~~ahh~eaIRdla---fSpnDskF~t~SdDg~ikiWdf~~~kee~------vL~GHgwdVksvdWHP---~k 234 (464)
T KOG0284|consen 168 NM-NNVKIIQAHHAEAIRDLA---FSPNDSKFLTCSDDGTIKIWDFRMPKEER------VLRGHGWDVKSVDWHP---TK 234 (464)
T ss_pred ch-hhhHHhhHhhhhhhheec---cCCCCceeEEecCCCeEEEEeccCCchhh------eeccCCCCcceeccCC---cc
Confidence 64 455566535569999998 89999999999999999999998776433 4799999999999999 67
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCcccc
Q 000709 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCEL 355 (1339)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~ 355 (1339)
.+|++||.|..|++||.++++|+.+ +.+|.+.|..+.|++++.+| ++|+|.. ++|+++.
T Consensus 235 gLiasgskDnlVKlWDprSg~cl~t------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m------------ 296 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCLAT------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM------------ 296 (464)
T ss_pred ceeEEccCCceeEeecCCCcchhhh------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh------------
Confidence 8999999999999999999999887 68999999999999999965 8899985 8999843
Q ss_pred CCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 356 SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 356 ~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
..+.++++|.+ .+++++|||....++.+|+.||.| ..|..-...++
T Consensus 297 ---kEl~~~r~Hkk-dv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~ 342 (464)
T KOG0284|consen 297 ---KELFTYRGHKK-DVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPL 342 (464)
T ss_pred ---HHHHHhhcchh-hheeeccccccccceeeccCCCce-EEEeccccccc
Confidence 22567778888 899999999999999999999998 58876633333
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=234.41 Aligned_cols=247 Identities=19% Similarity=0.275 Sum_probs=212.2
Q ss_pred cccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 114 TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 114 ~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
.+.+| .++|+|+++.|.++ ++++|+.|+++ +||+.+++.+. ...+|-..|+.+++ |+...|+++++.|+.
T Consensus 146 Vi~gH-lgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl--tltGhi~~vr~vav-----S~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 146 VISGH-LGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL--TLTGHIETVRGVAV-----SKRHPYLFSAGEDKQ 216 (460)
T ss_pred hhhhc-cceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE--eecchhheeeeeee-----cccCceEEEecCCCe
Confidence 34455 89999999999876 99999999999 77999997643 56789999999999 778899999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000709 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1339)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1339)
|+.||++..+.++.+. ||-+.|.|++ .+|.-+.|++|+.|.++||||+++...+. ++.||...|.++.+.
T Consensus 217 VKCwDLe~nkvIR~Yh-GHlS~V~~L~---lhPTldvl~t~grDst~RvWDiRtr~~V~------~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYH-GHLSGVYCLD---LHPTLDVLVTGGRDSTIRVWDIRTRASVH------VLSGHTNPVASVMCQ 286 (460)
T ss_pred eEEEechhhhhHHHhc-cccceeEEEe---ccccceeEEecCCcceEEEeeecccceEE------EecCCCCcceeEEee
Confidence 9999999999999987 9999999998 78999999999999999999999987554 489999999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe-EEEccCCccccccc
Q 000709 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH-IWAIEHPTYSALTR 350 (1339)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~-LWDi~t~~~~~~~~ 350 (1339)
| -...+++||.|++|++||++.|+...+ +..|...|.+++.+|....+ ++|.|.. -|++..+..
T Consensus 287 ~---~dpqvit~S~D~tvrlWDl~agkt~~t------lt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f----- 352 (460)
T KOG0285|consen 287 P---TDPQVITGSHDSTVRLWDLRAGKTMIT------LTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEF----- 352 (460)
T ss_pred c---CCCceEEecCCceEEEeeeccCceeEe------eecccceeeEEecCCchhhhhccCCccceeccCCccch-----
Confidence 8 467899999999999999999998777 57888999999999997654 6777764 899887632
Q ss_pred CccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc
Q 000709 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1339)
Q Consensus 351 ~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~ 407 (1339)
++.+.+|.. .|.+++... ++ ++++|++.|.+ .+||.++.+.+.
T Consensus 353 ----------~~nlsgh~~-iintl~~ns-D~-v~~~G~dng~~-~fwdwksg~nyQ 395 (460)
T KOG0285|consen 353 ----------LQNLSGHNA-IINTLSVNS-DG-VLVSGGDNGSI-MFWDWKSGHNYQ 395 (460)
T ss_pred ----------hhccccccc-eeeeeeecc-Cc-eEEEcCCceEE-EEEecCcCcccc
Confidence 445677777 899999887 34 58899999997 799988755443
No 47
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1e-20 Score=222.94 Aligned_cols=453 Identities=15% Similarity=0.202 Sum_probs=290.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-EEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI-YELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l-~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
++.+.-....|+++||+.+.+.||.+-.||.|.|||+..+-.. ..+..+....|..++ +.++++.++
T Consensus 18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g---------- 87 (691)
T KOG2048|consen 18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG---------- 87 (691)
T ss_pred EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec----------
Confidence 4555556688999999999999999999999999999987544 344443333444444 333333333
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~ 159 (1339)
.+|.|.-||+.+.+..+ ......+.|++++.+|.+. .+++||+||.+.. +...++......
T Consensus 88 ------------~sg~i~EwDl~~lk~~~-----~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 ------------LSGSITEWDLHTLKQKY-----NIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred ------------CCceEEEEecccCceeE-----EecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEee
Confidence 48999999999987652 3333467899999999997 8999999995533 555554433333
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cC----CCCCeeEEEEeeeCCCCCEEEE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT---GG----HKGSISCLMTFMASSGEALLVS 232 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~---~g----H~~~V~sl~wf~~spdg~~LaS 232 (1339)
+....+.|.|+.| ++++..|+.|+.||.|++||..++..+.... .+ ..--|+++. +- ....|++
T Consensus 150 l~rq~sRvLslsw-----~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~---~L-rd~tI~s 220 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW-----NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVL---FL-RDSTIAS 220 (691)
T ss_pred cccccceEEEEEe-----cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEE---Ee-ecCcEEE
Confidence 3444689999999 7899999999999999999999887665221 01 222344443 22 4458999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee-EEEecCCCccc
Q 000709 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLA 311 (1339)
Q Consensus 233 gS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~ 311 (1339)
|..-|+|.+||...+..++. ...|...|.+++..+ ++++++++|.|+.|..|...+... +-. .....
T Consensus 221 gDS~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~---~~d~vfsaGvd~~ii~~~~~~~~~~wv~---~~~r~ 288 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQS------HSCHDADVLALAVAD---NEDRVFSAGVDPKIIQYSLTTNKSEWVI---NSRRD 288 (691)
T ss_pred ecCCceEEEEcccCcchhhh------hhhhhcceeEEEEcC---CCCeEEEccCCCceEEEEecCCccceee---ecccc
Confidence 99999999999999987765 577999999999998 789999999999999998876543 222 12246
Q ss_pred ccCCceeEEEeCCCCCEEEEecCCeEEEccCCcc-----c------------------------ccccCccccC------
Q 000709 312 CHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTY-----S------------------------ALTRPLCELS------ 356 (1339)
Q Consensus 312 ~H~~~V~svafspdg~iLs~s~Dg~LWDi~t~~~-----~------------------------~~~~~l~~~~------ 356 (1339)
.|...|.+++..++ .+++||.|.+|.-...+.. . .....++.+-
T Consensus 289 ~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g 367 (691)
T KOG2048|consen 289 LHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQG 367 (691)
T ss_pred CCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCccccc
Confidence 78888999998877 4668888876432211110 0 0000111110
Q ss_pred --CCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc-----ccCCCCCCCCceEEEEecCeEE
Q 000709 357 --SLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA-----PLPTPSGSRDHSAVYIVERELK 429 (1339)
Q Consensus 357 --~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~-----~~~~~~~s~~~s~~~~~~~~l~ 429 (1339)
....+..+.-.....|.|.+.|| ++++|+.++-..+ +++.+...+.+. ..+.... ......|..++.+.
T Consensus 368 ~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~~~--~iy~L~~~~~vk~~~v~~~~~~~~-~a~~i~ftid~~k~ 443 (691)
T KOG2048|consen 368 EYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTVSRT--KIYRLQPDPNVKVINVDDVPLALL-DASAISFTIDKNKL 443 (691)
T ss_pred ccChhhheeeecCCccceeeeccCC-CCCEEEEeeccce--EEEEeccCcceeEEEeccchhhhc-cceeeEEEecCceE
Confidence 11112222222334699999999 6888999886655 455444322211 1111111 11223344444422
Q ss_pred E---------EEeeeccCCCCCCCCCcccccCCcccCCCchhhHHHhhcccccccCCCCCccEEEEcCCCCEEEEEECCC
Q 000709 430 L---------VNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDI 500 (1339)
Q Consensus 430 l---------~~f~l~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylaV~~~~~ 500 (1339)
+ ..|++..+ .++++ ..+......+..+.+.+|++|.|+|+.. ..
T Consensus 444 ~~~s~~~~~le~~el~~p--------------------s~kel------~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~ 496 (691)
T KOG2048|consen 444 FLVSKNIFSLEEFELETP--------------------SFKEL------KSIQSQAKCPSISRLVVSSDGNYIAAIS-TR 496 (691)
T ss_pred EEEecccceeEEEEecCc--------------------chhhh------hccccccCCCcceeEEEcCCCCEEEEEe-cc
Confidence 1 11111110 11111 0111112234557899999999997775 77
Q ss_pred CEEEEEEeCCceeee-----cCceeEEEec-cCCCeEEEEecc
Q 000709 501 PYFSVYKVSDWSIVD-----SGSARLLAWD-TCRDRFAILESA 537 (1339)
Q Consensus 501 g~~~Vy~i~~~~~i~-----~G~~~~~aWs-~~~~~fAvl~~~ 537 (1339)
+.+.+|++...+..- .-.++..+++ ...++.+|.+++
T Consensus 497 g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~ 539 (691)
T KOG2048|consen 497 GQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN 539 (691)
T ss_pred ceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecC
Confidence 888999987643321 3446777777 357788888754
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=8.6e-23 Score=249.76 Aligned_cols=251 Identities=20% Similarity=0.303 Sum_probs=202.4
Q ss_pred ccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000709 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1339)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtI 193 (1339)
...++...|.++.|+++|+ .+++++.++.+ .|+....+.........|...|++++| +|++.++++|+.|++|
T Consensus 154 ~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~f-----s~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 154 LAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAF-----SPDGSYLLSGSDDKTL 227 (456)
T ss_pred ecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhccccccccceeeeEE-----CCCCcEEEEecCCceE
Confidence 3455577899999999998 68888888888 556655441123334789999999999 7899999999999999
Q ss_pred EEEEC-CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000709 194 RVLSM-ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1339)
Q Consensus 194 rIWDl-~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1339)
+|||+ ..+.+++++. +|...|++++ |+++++++++|+.|++|++||++++++.+. +.+|.+.|++++|+
T Consensus 228 riwd~~~~~~~~~~l~-gH~~~v~~~~---f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~------l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLK-GHSTYVTSVA---FSPDGNLLVSGSDDGTVRIWDVRTGECVRK------LKGHSDGISGLAFS 297 (456)
T ss_pred EEeeccCCCeEEEEec-CCCCceEEEE---ecCCCCEEEEecCCCcEEEEeccCCeEEEe------eeccCCceEEEEEC
Confidence 99999 5568889988 9999999998 899999999999999999999999887665 79999999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCe--eEEEecCCCcccccCC--ceeEEEeCCCCCEE-EEecCCe--EEEccCCcc
Q 000709 273 RVMGGSPQLITIGADKTLAIWDTVSFK--ELRRIKPVPKLACHSV--ASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTY 345 (1339)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~--~l~~~~~~~~l~~H~~--~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~ 345 (1339)
+ ++.+|++++.|+.|+|||+.++. ++.. +.++.. .++++.|+|++.++ +++.|+. +||+..+..
T Consensus 298 ~---d~~~l~s~s~d~~i~vwd~~~~~~~~~~~------~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~ 368 (456)
T KOG0266|consen 298 P---DGNLLVSASYDGTIRVWDLETGSKLCLKL------LSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS 368 (456)
T ss_pred C---CCCEEEEcCCCccEEEEECCCCceeeeec------ccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc
Confidence 9 89999999999999999999998 4444 344444 48999999999966 6677765 899996532
Q ss_pred cccccCccccCCCCCCeEEccCCcc--cEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcc
Q 000709 346 SALTRPLCELSSLVPPQVLAHHKKL--RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVA 407 (1339)
Q Consensus 346 ~~~~~~l~~~~~~~~~~tl~~~~~~--~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~ 407 (1339)
...+.+|... .+.+...++ ++.++.+|+.|+.| .+||..+...+.
T Consensus 369 ---------------~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v-~~~~~~s~~~~~ 415 (456)
T KOG0266|consen 369 ---------------VGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSV-YVWDSSSGGILQ 415 (456)
T ss_pred ---------------eeeecccCCcceeEecccccC-CCCeEEEEeCCceE-EEEeCCccchhh
Confidence 3344445442 344444455 67889999999998 799988654444
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.91 E-value=4.9e-23 Score=222.92 Aligned_cols=256 Identities=17% Similarity=0.184 Sum_probs=206.0
Q ss_pred ccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 117 SNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 117 ~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
.+|.+.|+.+.|+|+|. +|++|+.|+.|+++-..+.++..-..++|.+.|+.+.| ..|++.|++++.|.+++.|
T Consensus 44 ~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~-----~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHG-----MRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred CCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccceeeeccccceeEeeee-----ccCCCEEEEecCCceEEEE
Confidence 34488999999999997 99999999988543334455555567899999999999 7899999999999999999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
|.+++++++++. +|...|+++. ....+..++.|++.||++++||+++..+++.+ .....++++.|..
T Consensus 118 D~~tG~~~rk~k-~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~-------~~kyqltAv~f~d--- 184 (338)
T KOG0265|consen 118 DAETGKRIRKHK-GHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF-------ENKYQLTAVGFKD--- 184 (338)
T ss_pred ecccceeeehhc-cccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcc-------ccceeEEEEEecc---
Confidence 999999999998 9999999996 23445568889999999999999998877653 2344588999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCE-EEEecCCe--EEEccCCcccccccCcc
Q 000709 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~ 353 (1339)
.+..+.+|+-|+.|++||++....+.+ +.||.+.|+.+..+++|.+ ++-+.|.+ +||++--
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~------lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~---------- 248 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYT------LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF---------- 248 (338)
T ss_pred cccceeeccccCceeeeccccCcceEE------eecccCceeeEEeccCCCccccccccceEEEEEeccc----------
Confidence 788999999999999999999888887 6999999999999999985 58899996 8999832
Q ss_pred ccCCCCCCeEEccCCc---ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccC
Q 000709 354 ELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~~---~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~ 410 (1339)
....+++..+.++.. .....++|+| ++..+..|+.|..+ .+||...+..+-.+|
T Consensus 249 -~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~v-yvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 249 -APSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFV-YVWDTTSRRILYKLP 305 (338)
T ss_pred -CCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceE-EEeecccccEEEEcC
Confidence 111222333433321 1345689999 67779999999997 799987655444444
No 50
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.91 E-value=1.5e-22 Score=223.90 Aligned_cols=287 Identities=16% Similarity=0.195 Sum_probs=235.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+-.+.||.+.|+|+.||-+|.+||||+-+|.|+||+..++.....+. .....+..+. |.+.+|+.|+
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp~a~illAG~---------- 167 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHPRAHILLAGS---------- 167 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecccccEEEeec----------
Confidence 45688999999999999999999999999999999999999988886 3345555555 8888888886
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.||.+-+|.+...... ..+.+| ...+++=.|.|+|+ .++++.+|+++ +||..++...... .
T Consensus 168 -----------~DGsvWmw~ip~~~~~----kv~~Gh-~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~p~~~~-~ 229 (399)
T KOG0296|consen 168 -----------TDGSVWMWQIPSQALC----KVMSGH-NSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQPLHKI-T 229 (399)
T ss_pred -----------CCCcEEEEECCCccee----eEecCC-CCCcccccccCCCc-eEEEEecCceEEEEecCCCceeEEe-c
Confidence 5889999999885332 456665 88999999999998 88999999988 6799998643321 1
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCCeeEEEEeeeCCCCCEEEEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG-------GHKGSISCLMTFMASSGEALLVSG 233 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~-------gH~~~V~sl~wf~~spdg~~LaSg 233 (1339)
........|+.+ +..+..++.|+.++.+++-+..+++.+..... .|...+.|+....++..-.+.++|
T Consensus 230 ~~e~~~~~~~~~-----~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 230 QAEGLELPCISL-----NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred ccccCcCCcccc-----ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 222456778888 67899999999999999999999988877652 566677777644456667789999
Q ss_pred eCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccccc
Q 000709 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1339)
Q Consensus 234 S~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1339)
+.||+|.+||+...+..+ ...|..+|..+.|-+ ..+|++++.||.|+.||.++|+++.+ +.||
T Consensus 305 ~vdG~i~iyD~a~~~~R~-------~c~he~~V~~l~w~~----t~~l~t~c~~g~v~~wDaRtG~l~~~------y~GH 367 (399)
T KOG0296|consen 305 SVDGTIAIYDLAASTLRH-------ICEHEDGVTKLKWLN----TDYLLTACANGKVRQWDARTGQLKFT------YTGH 367 (399)
T ss_pred cccceEEEEecccchhhe-------eccCCCceEEEEEcC----cchheeeccCceEEeeeccccceEEE------EecC
Confidence 999999999998765433 356899999999986 47999999999999999999999988 5899
Q ss_pred CCceeEEEeCCCCCEE-EEecCCe--EEEcc
Q 000709 314 SVASWCHPRAPNLDIL-TCVKDSH--IWAIE 341 (1339)
Q Consensus 314 ~~~V~svafspdg~iL-s~s~Dg~--LWDi~ 341 (1339)
...|.+++++|+.+++ ++|.|++ |+++.
T Consensus 368 ~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 368 QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999998855 8888886 67653
No 51
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=7.3e-22 Score=257.98 Aligned_cols=273 Identities=19% Similarity=0.235 Sum_probs=206.2
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCc--eee--cc-ccccCCCC
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR--GRD--IP-KQELDNKS 166 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~--~~~--v~-~~~~h~~~ 166 (1339)
.+|.+++|+....+............|...|.+++|+|+++ ++++|+.|+.| +||..... ... .. ....+...
T Consensus 456 ~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 534 (793)
T PLN00181 456 LEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSK 534 (793)
T ss_pred hhhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEecccCc
Confidence 46778888877654322111112233588899999999998 89999999988 66764321 000 00 11223567
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeC-CCCCEEEEEeCCCcEEEEeCC
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMAS-SGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~s-pdg~~LaSgS~DgtVrVWDl~ 245 (1339)
|.+++|+| +++.+|++++.||+|++||+.+++.+..+. +|.+.|++++ ++ .++.+|++|+.|++|++||++
T Consensus 535 v~~l~~~~----~~~~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~---~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 535 LSGICWNS----YIKSQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSID---YSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred eeeEEecc----CCCCEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEE---EcCCCCCEEEEEcCCCEEEEEECC
Confidence 89999953 357899999999999999999999988887 9999999998 45 478999999999999999999
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe-eEEEecCCCcccccCCceeEEEeCC
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
++.++.. +..| ..|.++.|++ .++.+|++|+.|+.|++||+++.+ .+.. +.+|...|+++.|.+
T Consensus 607 ~~~~~~~------~~~~-~~v~~v~~~~--~~g~~latgs~dg~I~iwD~~~~~~~~~~------~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 607 QGVSIGT------IKTK-ANICCVQFPS--ESGRSLAFGSADHKVYYYDLRNPKLPLCT------MIGHSKTVSYVRFVD 671 (793)
T ss_pred CCcEEEE------EecC-CCeEEEEEeC--CCCCEEEEEeCCCeEEEEECCCCCccceE------ecCCCCCEEEEEEeC
Confidence 8876554 3333 5799999976 378999999999999999998765 3333 578999999999985
Q ss_pred CCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 325 NLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 325 dg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
...+++++.|++ |||+..... .....++..+.+|.. .+.+++|+++ +.+|++|+.||.| ++|+..
T Consensus 672 ~~~lvs~s~D~~ikiWd~~~~~~---------~~~~~~l~~~~gh~~-~i~~v~~s~~-~~~lasgs~D~~v-~iw~~~ 738 (793)
T PLN00181 672 SSTLVSSSTDNTLKLWDLSMSIS---------GINETPLHSFMGHTN-VKNFVGLSVS-DGYIATGSETNEV-FVYHKA 738 (793)
T ss_pred CCEEEEEECCCEEEEEeCCCCcc---------ccCCcceEEEcCCCC-CeeEEEEcCC-CCEEEEEeCCCEE-EEEECC
Confidence 555778999996 899875310 001133556777776 8999999995 6789999999997 799865
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.1e-23 Score=232.55 Aligned_cols=250 Identities=18% Similarity=0.240 Sum_probs=203.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
++++.||...|..+.||||.++|++|+.|..+++||+.+|.+...+..++...+.+.+ ||+..+++|+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs---------- 331 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS---------- 331 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC----------
Confidence 7899999999999999999999999999999999999999999988766444444444 9999999986
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~ 160 (1339)
.|+++..||+..+.. ..-.+.....|.+++.++||+.+++ .+.|..+++ +..+...+. .
T Consensus 332 -----------~dr~i~~wdlDgn~~-----~~W~gvr~~~v~dlait~Dgk~vl~-v~~d~~i~l~~~e~~~dr~---l 391 (519)
T KOG0293|consen 332 -----------PDRTIIMWDLDGNIL-----GNWEGVRDPKVHDLAITYDGKYVLL-VTVDKKIRLYNREARVDRG---L 391 (519)
T ss_pred -----------CCCcEEEecCCcchh-----hcccccccceeEEEEEcCCCcEEEE-Eecccceeeechhhhhhhc---c
Confidence 478999999987643 1222332457999999999995544 456666644 766543322 2
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
......|++... |.+++++++--.+..|++||++..+.++++. ||+..-.-+..++--.+..+++|||.|+.|+
T Consensus 392 ise~~~its~~i-----S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~-Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvy 465 (519)
T KOG0293|consen 392 ISEEQPITSFSI-----SKDGKLALVNLQDQEIHLWDLEENKLVRKYF-GHKQGHFIIRSCFGGGNDKFIASGSEDSKVY 465 (519)
T ss_pred ccccCceeEEEE-----cCCCcEEEEEcccCeeEEeecchhhHHHHhh-cccccceEEEeccCCCCcceEEecCCCceEE
Confidence 334568999999 8999999999999999999999989999987 9987766665444456678999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
+|+..+|+.+.. +.||...|+||+|+|. +..++|++|+||+||||....
T Consensus 466 IWhr~sgkll~~------LsGHs~~vNcVswNP~--~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 466 IWHRISGKLLAV------LSGHSKTVNCVSWNPA--DPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEccCCceeEe------ecCCcceeeEEecCCC--CHHHhhccCCCCeEEEecCCc
Confidence 999999987654 8999999999999994 888999999999999998753
No 53
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=208.96 Aligned_cols=238 Identities=16% Similarity=0.261 Sum_probs=193.1
Q ss_pred cccccCCCCeeeeeeCCC-CCeEEEEEecCcEEEE-EecC---CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE
Q 000709 114 TAVSNVTSGFASPPPSTK-GRHFLVICCVNKAIFL-DLVT---MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1339)
Q Consensus 114 ~~~~~~~~~V~slafspd-g~~lLasgs~dg~I~w-D~~t---~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs 188 (1339)
...+| .+.++.++|+|- |. +|++|+.|+.+++ +... -.++.+ ...+|...|+.++| +|.|++|+++|
T Consensus 9 ~~~gh-~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~v-ld~~hkrsVRsvAw-----sp~g~~La~aS 80 (312)
T KOG0645|consen 9 KLSGH-KDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTV-LDDGHKRSVRSVAW-----SPHGRYLASAS 80 (312)
T ss_pred eecCC-CCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEe-ccccchheeeeeee-----cCCCcEEEEee
Confidence 34444 668999999998 65 9999999999965 6653 223222 23579999999999 78999999999
Q ss_pred CCCcEEEEECCC--CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000709 189 SDGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1339)
Q Consensus 189 ~DgtIrIWDl~t--~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1339)
.|.++.||.-.. .+++..++ ||...|.|++ ++++|++||+|+.|+.|-||.+..+.. +.....|..|...|
T Consensus 81 FD~t~~Iw~k~~~efecv~~lE-GHEnEVK~Va---ws~sG~~LATCSRDKSVWiWe~deddE---fec~aVL~~HtqDV 153 (312)
T KOG0645|consen 81 FDATVVIWKKEDGEFECVATLE-GHENEVKCVA---WSASGNYLATCSRDKSVWIWEIDEDDE---FECIAVLQEHTQDV 153 (312)
T ss_pred ccceEEEeecCCCceeEEeeee-ccccceeEEE---EcCCCCEEEEeeCCCeEEEEEecCCCc---EEEEeeeccccccc
Confidence 999999998653 47888887 9999999998 699999999999999999999986543 33456689999999
Q ss_pred EEEEeeccCCCCCEEEEEeCCCcEEEEECC---CCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEEc
Q 000709 267 VAVELSRVMGGSPQLITIGADKTLAIWDTV---SFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAI 340 (1339)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~---t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~--LWDi 340 (1339)
..+.||| ...+|+++|.|++|++|+-. +..+.++ +.+|.+.|++++|++.|. +++|+.|++ ||..
T Consensus 154 K~V~WHP---t~dlL~S~SYDnTIk~~~~~~dddW~c~~t------l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 154 KHVIWHP---TEDLLFSCSYDNTIKVYRDEDDDDWECVQT------LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cEEEEcC---CcceeEEeccCCeEEEEeecCCCCeeEEEE------ecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999 67899999999999999876 3456666 689999999999999985 678899996 7875
Q ss_pred cCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 341 EHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 341 ~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
.+. +....+..++.+.|. ...||+++.|+.| ++|.
T Consensus 225 ~~~--------------------~~~~~sr~~Y~v~W~---~~~IaS~ggD~~i-~lf~ 259 (312)
T KOG0645|consen 225 YTD--------------------LSGMHSRALYDVPWD---NGVIASGGGDDAI-RLFK 259 (312)
T ss_pred ccC--------------------cchhcccceEeeeec---ccceEeccCCCEE-EEEE
Confidence 532 112223379999998 2359999999997 6774
No 54
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=245.62 Aligned_cols=277 Identities=20% Similarity=0.326 Sum_probs=232.0
Q ss_pred EEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccc--cceeEeeccccCCCcccc
Q 000709 5 KAFRP-TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAK--LEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 5 ~~L~g-Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d--~~~Lasgs~d~~gk~~~~ 81 (1339)
+.+.+ |...|.|..|+ ..++++++.|++|++||..++..+..--.+|.+++..+.-. +.+|.+|+
T Consensus 201 ~~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS---------- 268 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGS---------- 268 (537)
T ss_pred eeecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEe----------
Confidence 34454 56789999999 56899999999999999999999988334888888888833 78888887
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.|.++++||..++.|. ..+.+| .+.+.++...+ ..+++|+.|.++ +|++.++.+ +...
T Consensus 269 -----------~D~t~rvWd~~sg~C~----~~l~gh-~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~--l~l~ 327 (537)
T KOG0274|consen 269 -----------TDKTERVWDCSTGECT----HSLQGH-TSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGAC--LNLL 327 (537)
T ss_pred -----------cCCcEEeEecCCCcEE----EEecCC-CceEEEEEccC---ceEeeccCCceEEEEeccCcce--EEEe
Confidence 5889999999999997 345555 77888887755 467888999999 779998765 4445
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
.+|...|+|+.. ++.++++|+.|++|++||..++++++.+. +|.+.|.++. +... ..+++|+.|++|+
T Consensus 328 ~~h~~~V~~v~~-------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~---~~~~-~~~~Sgs~D~~Ik 395 (537)
T KOG0274|consen 328 RGHTGPVNCVQL-------DEPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLI---VDSE-NRLLSGSLDTTIK 395 (537)
T ss_pred ccccccEEEEEe-------cCCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEE---ecCc-ceEEeeeeccceE
Confidence 669999999999 58999999999999999999999999998 8999999995 3443 8999999999999
Q ss_pred EEeCCCC-CccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccc-cCCcee
Q 000709 241 LWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC-HSVASW 318 (1339)
Q Consensus 241 VWDl~tg-~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~-H~~~V~ 318 (1339)
+||+++. +++. ++.+|..-|.++.+. +++|++++.|++|++||..++++++.+ .+ |...|+
T Consensus 396 vWdl~~~~~c~~------tl~~h~~~v~~l~~~-----~~~Lvs~~aD~~Ik~WD~~~~~~~~~~------~~~~~~~v~ 458 (537)
T KOG0274|consen 396 VWDLRTKRKCIH------TLQGHTSLVSSLLLR-----DNFLVSSSADGTIKLWDAEEGECLRTL------EGRHVGGVS 458 (537)
T ss_pred eecCCchhhhhh------hhcCCcccccccccc-----cceeEeccccccEEEeecccCceeeee------ccCCcccEE
Confidence 9999998 6655 479999999877764 479999999999999999999999984 44 678888
Q ss_pred EEEeCCCCCEEEEecCCe--EEEccCCc
Q 000709 319 CHPRAPNLDILTCVKDSH--IWAIEHPT 344 (1339)
Q Consensus 319 svafspdg~iLs~s~Dg~--LWDi~t~~ 344 (1339)
++.+. +..+++++.|++ +||++++.
T Consensus 459 ~l~~~-~~~il~s~~~~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 459 ALALG-KEEILCSSDDGSVKLWDLRSGT 485 (537)
T ss_pred EeecC-cceEEEEecCCeeEEEecccCc
Confidence 88876 445778899996 89999764
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.90 E-value=4.3e-22 Score=221.08 Aligned_cols=262 Identities=16% Similarity=0.218 Sum_probs=205.6
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCC--eEEEEEecCcEEE-EEecC--CceeeccccccCCCCe
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR--HFLVICCVNKAIF-LDLVT--MRGRDIPKQELDNKSL 167 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~--~lLasgs~dg~I~-wD~~t--~~~~~v~~~~~h~~~V 167 (1339)
+||.+|+||...... ....+| .+.|.+++|.-..+ ..+++++.|++++ |-++. .....+....+|...|
T Consensus 123 YDg~~riWd~~Gk~~-----~~~~Gh-t~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V 196 (423)
T KOG0313|consen 123 YDGTSRIWDLKGKSI-----KTIVGH-TGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV 196 (423)
T ss_pred cCCeeEEEecCCceE-----EEEecC-CcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccce
Confidence 799999999987643 345565 88898888754332 2699999999994 43333 3333444456999999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCC-------------------------CeEEEEEecCCCCCeeEEEEee
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-------------------------WKLVRRYTGGHKGSISCLMTFM 222 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t-------------------------~~~i~~l~~gH~~~V~sl~wf~ 222 (1339)
-||.. .++|..+++||.|.+|.||+..+ +.++..+. ||...|.++.|.
T Consensus 197 ~sVsv-----~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~- 269 (423)
T KOG0313|consen 197 DSVSV-----DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWS- 269 (423)
T ss_pred eEEEe-----cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEc-
Confidence 99999 78999999999999999999321 12344454 999999999863
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 223 ~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
+...+.|+|.|.+|+.||+.++.+..+ +. .....+++.++| ...+|++||.|..|++||.+++.--.
T Consensus 270 ---d~~v~yS~SwDHTIk~WDletg~~~~~------~~-~~ksl~~i~~~~---~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 270 ---DATVIYSVSWDHTIKVWDLETGGLKST------LT-TNKSLNCISYSP---LSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred ---CCCceEeecccceEEEEEeecccceee------ee-cCcceeEeeccc---ccceeeecCCCCceeecCCCCCCCce
Confidence 377999999999999999999987654 22 345689999999 78999999999999999998764211
Q ss_pred EecCCCcccccCCceeEEEeCCCCC--EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEe
Q 000709 303 RIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1339)
Q Consensus 303 ~~~~~~~l~~H~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~s 378 (1339)
. ...+.+|.+.|.++.|+|... +++++.|++ +||++... .++..+.+|.+ +|.++.|.
T Consensus 337 v---~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--------------~plydI~~h~D-Kvl~vdW~ 398 (423)
T KOG0313|consen 337 V---SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--------------APLYDIAGHND-KVLSVDWN 398 (423)
T ss_pred e---EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--------------CcceeeccCCc-eEEEEecc
Confidence 1 123789999999999999876 568999996 89999642 35677888888 99999999
Q ss_pred cCCCcEEEEEECCCeEEEEecCC
Q 000709 379 SLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 379 p~~~~lLatGs~DG~IlriWd~~ 401 (1339)
. +.+|++|+.|..+ +++...
T Consensus 399 ~--~~~IvSGGaD~~l-~i~~~~ 418 (423)
T KOG0313|consen 399 E--GGLIVSGGADNKL-RIFKGS 418 (423)
T ss_pred C--CceEEeccCcceE-EEeccc
Confidence 6 6679999999997 787543
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.89 E-value=4.8e-21 Score=213.07 Aligned_cols=242 Identities=24% Similarity=0.363 Sum_probs=199.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+..+.+|...+.++.|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~------------------------------- 92 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH------------------------------- 92 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEecc-------------------------------
Confidence 4577889999999999999999999999999999999876544444311
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
...+.++.|+++++ ++++++.++.+ +||..+++. ......
T Consensus 93 ------------------------------------~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 133 (289)
T cd00200 93 ------------------------------------TSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKC--LTTLRG 133 (289)
T ss_pred ------------------------------------CCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEE--EEEecc
Confidence 33577888999876 88888856666 678876543 333457
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|...|.++.| ++++.++++++.|+.|++||+++++.+..+. .|...+.++. ++++++.+++++.|+.|++|
T Consensus 134 ~~~~i~~~~~-----~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~---~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 134 HTDWVNSVAF-----SPDGTFVASSSQDGTIKLWDLRTGKCVATLT-GHTGEVNSVA---FSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred CCCcEEEEEE-----cCcCCEEEEEcCCCcEEEEEccccccceeEe-cCccccceEE---ECCCcCEEEEecCCCcEEEE
Confidence 8889999999 6678899988889999999999888888887 8989999998 68899899999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
|++.++.... +..|...+.++.|+| ++.++++++.|+.|++||+.+++.... +..|...+.++.|
T Consensus 205 d~~~~~~~~~------~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~~~------~~~~~~~i~~~~~ 269 (289)
T cd00200 205 DLSTGKCLGT------LRGHENGVNSVAFSP---DGYLLASGSEDGTIRVWDLRTGECVQT------LSGHTNSVTSLAW 269 (289)
T ss_pred ECCCCceecc------hhhcCCceEEEEEcC---CCcEEEEEcCCCcEEEEEcCCceeEEE------ccccCCcEEEEEE
Confidence 9998765543 457888999999999 688888888899999999998887776 3578889999999
Q ss_pred CCCCCEE-EEecCCe--EEE
Q 000709 323 APNLDIL-TCVKDSH--IWA 339 (1339)
Q Consensus 323 spdg~iL-s~s~Dg~--LWD 339 (1339)
++++.++ +++.|+. +|+
T Consensus 270 ~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 270 SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCCCEEEEecCCCeEEecC
Confidence 9997754 7788886 674
No 57
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.89 E-value=3.2e-20 Score=211.63 Aligned_cols=329 Identities=17% Similarity=0.225 Sum_probs=233.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCC--------eEEEEECCCCcEEEEEeccCccceEEec----cccceeEeec
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASD--------HVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGE 71 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DG--------tIrIWDl~tg~~l~~~~~~~~~~i~~vs----~d~~~Lasgs 71 (1339)
-+.+.||++.|.|++.||+.-.+++|-..| .|+|||..+-+.++.+-.. ..++.+++ ..|..|..-.
T Consensus 97 Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f-~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 97 QRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFF-DRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccc-cccceeeeecccCCCceEEEec
Confidence 467889999999999999988888775444 5999998776666666522 23344433 2233332221
Q ss_pred cccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecC
Q 000709 72 LEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT 151 (1339)
Q Consensus 72 ~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t 151 (1339)
.. .+..+.+||+..+.... ........|....|+|.++.++++++.....+|+...
T Consensus 176 ~s-------------------~~h~lSVWdWqk~~~~~-----~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 176 DS-------------------NPHMLSVWDWQKKAKLG-----PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred CC-------------------CccccchhhchhhhccC-----cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 11 35678899988765532 1222245678889999999999999999999998877
Q ss_pred Cceee-ccccc-cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCE
Q 000709 152 MRGRD-IPKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEAL 229 (1339)
Q Consensus 152 ~~~~~-v~~~~-~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~ 229 (1339)
+.... ...++ .....|.|+.| .++|. +++|.++|.|.||+..+.+..+... .|.+.|.+++ .-.+|.+
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F-----~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~---~lr~Gtl 301 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTF-----LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLC---MLRDGTL 301 (626)
T ss_pred CceEEEeeccccccceEEEEEEE-----cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEE---EecCccE
Confidence 65422 12222 23478999999 45564 7899999999999999888888887 9999999998 5567755
Q ss_pred EEEEeCCCcEEEEeCCCCCc-----------cc---------------------eec--ccccccccccceEEEEeeccC
Q 000709 230 LVSGGSDGLLILWSADHGQD-----------SR---------------------ELV--PKLSLKAHDGGVVAVELSRVM 275 (1339)
Q Consensus 230 LaSgS~DgtVrVWDl~tg~~-----------~~---------------------~~~--~~~~l~gH~~~V~svafsp~~ 275 (1339)
+||+.|+.|..||-.-.+. ++ .+. ...+..+|.+..+.++.+|
T Consensus 302 -lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-- 378 (626)
T KOG2106|consen 302 -LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-- 378 (626)
T ss_pred -eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--
Confidence 4599999999998421110 00 000 1123467889999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--EEEccCCcccccccCcc
Q 000709 276 GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~ 353 (1339)
+.+++++++.|+.+++|+ ..+...+ .--...+.|+.|+|.|.++.|...|+ +.|..+.
T Consensus 379 -s~~q~~T~gqdk~v~lW~--~~k~~wt-------~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~---------- 438 (626)
T KOG2106|consen 379 -SKNQLLTCGQDKHVRLWN--DHKLEWT-------KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQ---------- 438 (626)
T ss_pred -ChhheeeccCcceEEEcc--CCceeEE-------EEecCceeEeeccCcceEEEeeccceEEEEecccc----------
Confidence 788999999999999999 3343333 12234566999999996667778887 5566543
Q ss_pred ccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
...++...+. +++++.|+| ++.++|.|+.|+.| .+|.
T Consensus 439 ------~lv~~~~d~~-~ls~v~ysp-~G~~lAvgs~d~~i-yiy~ 475 (626)
T KOG2106|consen 439 ------DLVTIHTDNE-QLSVVRYSP-DGAFLAVGSHDNHI-YIYR 475 (626)
T ss_pred ------eeEEEEecCC-ceEEEEEcC-CCCEEEEecCCCeE-EEEE
Confidence 1334444544 899999999 57889999999997 4553
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=6.3e-22 Score=213.96 Aligned_cols=312 Identities=15% Similarity=0.199 Sum_probs=223.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
..+..|...+.+.+|+|||.++|||+.|-.|+|.|++.--. ++ . + +.+..+..+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermla-ks-~--~-----------~em~~~~~q----------- 159 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLA-KS-K--P-----------KEMISGDTQ----------- 159 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhh-hc-c--h-----------hhhccCCcc-----------
Confidence 46778999999999999999999999999999999873100 00 0 0 001111100
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h 163 (1339)
..+...+++..| ...|+++.|+|... +|++|+.|+++.+ |+.....+.-......
T Consensus 160 ----------------------a~hPvIRTlYDH-~devn~l~FHPre~-ILiS~srD~tvKlFDfsK~saKrA~K~~qd 215 (430)
T KOG0640|consen 160 ----------------------ARHPVIRTLYDH-VDEVNDLDFHPRET-ILISGSRDNTVKLFDFSKTSAKRAFKVFQD 215 (430)
T ss_pred ----------------------cCCceEeehhhc-cCcccceeecchhh-eEEeccCCCeEEEEecccHHHHHHHHHhhc
Confidence 001112344555 77899999999886 9999999999966 8865433322222334
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY--TGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l--~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
...|+++.|| |.|.+|+.|.+-.++++||+++.++...- ..+|++.|+++. +++.+++.++||.||.|++
T Consensus 216 ~~~vrsiSfH-----PsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~---Ys~t~~lYvTaSkDG~Ikl 287 (430)
T KOG0640|consen 216 TEPVRSISFH-----PSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVR---YSSTGSLYVTASKDGAIKL 287 (430)
T ss_pred cceeeeEeec-----CCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEE---ecCCccEEEEeccCCcEEe
Confidence 6789999995 68999999999999999999998886554 247999999997 8999999999999999999
Q ss_pred EeCCCCCccceeccccccccccc-ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~-~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
||--+++|+.++ -..|.+ .|.+..|.. ++++|++.|.|..+++|.+.+++++..+.... ..+....-+..
T Consensus 288 wDGVS~rCv~t~-----~~AH~gsevcSa~Ftk---n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tgrq~~rtqA 358 (430)
T KOG0640|consen 288 WDGVSNRCVRTI-----GNAHGGSEVCSAVFTK---NGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTGRQKHRTQA 358 (430)
T ss_pred eccccHHHHHHH-----HhhcCCceeeeEEEcc---CCeEEeecCCcceeeeeeecCCceEEEEecCC-cccchhhhhhh
Confidence 999999988764 256665 588899998 89999999999999999999999998864321 11111112233
Q ss_pred EeCCCCCEEEEecC--Ce--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000709 321 PRAPNLDILTCVKD--SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1339)
Q Consensus 321 afspdg~iLs~s~D--g~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Ilr 396 (1339)
.|+....++---.+ +. -||.++... +.+. --+|+. .+.++..||..+- +.+|++|-.+ |
T Consensus 359 vFNhtEdyVl~pDEas~slcsWdaRtadr-------------~~l~-slgHn~-a~R~i~HSP~~p~-FmTcsdD~ra-R 421 (430)
T KOG0640|consen 359 VFNHTEDYVLFPDEASNSLCSWDARTADR-------------VALL-SLGHNG-AVRWIVHSPVEPA-FMTCSDDFRA-R 421 (430)
T ss_pred hhcCccceEEccccccCceeeccccchhh-------------hhhc-ccCCCC-CceEEEeCCCCCc-eeeeccccee-e
Confidence 45555444422111 11 488876521 0111 124555 8999999996555 8899999887 8
Q ss_pred EecC
Q 000709 397 EFDP 400 (1339)
Q Consensus 397 iWd~ 400 (1339)
+|--
T Consensus 422 FWyr 425 (430)
T KOG0640|consen 422 FWYR 425 (430)
T ss_pred eeee
Confidence 9943
No 59
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.89 E-value=1.8e-22 Score=230.09 Aligned_cols=247 Identities=19% Similarity=0.264 Sum_probs=202.5
Q ss_pred ccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000709 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1339)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtI 193 (1339)
..+| ...|+++.|.|..-++|++++.|+.| +|++.. ...++.++.+|..+|+.+.| +.+|..+++++.|+.|
T Consensus 210 ~~gH-~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~gH~k~Vrd~~~-----s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 210 LSGH-TKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKGHRKPVRDASF-----NNCGTSFLSASFDRFL 282 (503)
T ss_pred ccCC-ccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhcchhhhhhhhc-----cccCCeeeeeecceee
Confidence 3455 88899999999444599999999999 777766 33567789999999999999 8899999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000709 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1339)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg-~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1339)
++||.++|+++.++. ....++|+. |+|++ +.|++|+.|+.|+.||+++++.+++ +..|-+.|+.+.|-
T Consensus 283 KlwDtETG~~~~~f~--~~~~~~cvk---f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe------Yd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFH--LDKVPTCVK---FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE------YDRHLGAILDITFV 351 (503)
T ss_pred eeeccccceEEEEEe--cCCCceeee---cCCCCCcEEEEecCCCcEEEEeccchHHHHH------HHhhhhheeeeEEc
Confidence 999999999999985 455778887 77777 8999999999999999999997765 67899999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe--------------------------------c--------CCCcccc
Q 000709 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRI--------------------------------K--------PVPKLAC 312 (1339)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~--------------------------------~--------~~~~l~~ 312 (1339)
+ ++.++++.++|++++||+.+....++.+ . ....+.+
T Consensus 352 ~---~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG 428 (503)
T KOG0282|consen 352 D---EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG 428 (503)
T ss_pred c---CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc
Confidence 9 8999999999999999998754322211 0 0123467
Q ss_pred cCCc--eeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 313 HSVA--SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 313 H~~~--V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
|..+ -..+.|||||.+| +|..||+ +||.++.. .+..+..|.. .+..+.|||.....+||
T Consensus 429 h~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---------------l~~~lkah~~-~ci~v~wHP~e~Skvat 492 (503)
T KOG0282|consen 429 HSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---------------LVSKLKAHDQ-PCIGVDWHPVEPSKVAT 492 (503)
T ss_pred eeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---------------hhhccccCCc-ceEEEEecCCCcceeEe
Confidence 7643 4478899999976 7788997 79988642 2345566755 89999999999999999
Q ss_pred EECCCeEEEEec
Q 000709 388 GTNVGVIISEFD 399 (1339)
Q Consensus 388 Gs~DG~IlriWd 399 (1339)
++.||.| ++|+
T Consensus 493 ~~w~G~I-kiwd 503 (503)
T KOG0282|consen 493 CGWDGLI-KIWD 503 (503)
T ss_pred cccCcee-EecC
Confidence 9999998 8996
No 60
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=5.4e-22 Score=239.90 Aligned_cols=307 Identities=14% Similarity=0.154 Sum_probs=203.8
Q ss_pred eEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-cccceeEeeccc-c-CCCcc
Q 000709 4 LKAFR-PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELE-H-KGKPT 79 (1339)
Q Consensus 4 l~~L~-gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-~d~~~Lasgs~d-~-~gk~~ 79 (1339)
.+.+. +|.+.|+++.||+||+|||+||.||.|+||.+...+. ..+.......++.-. ..++........ . .++..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~-~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESER-MRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccch-hcccccccchhhhhhhhccccCcccccccccccccc
Confidence 35566 9999999999999999999999999999999875433 222211111111111 111111110000 0 00000
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~~~~~v~ 158 (1339)
. ...+. .... .+.+...............|| ...|.++.||.++ +|++.+.|.+++ |++....|.++
T Consensus 338 ~-~~~~~------~s~~-~~~p~~~f~f~ekP~~ef~GH-t~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~CL~~- 405 (712)
T KOG0283|consen 338 S-SRKGS------QSPC-VLLPLKAFVFSEKPFCEFKGH-TADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKECLKV- 405 (712)
T ss_pred c-ccccc------CCcc-ccCCCccccccccchhhhhcc-chhheecccccCC--eeEeccccccEEeecCCCcceeeE-
Confidence 0 00000 0111 111111111111122345566 8889999999977 899999999995 57776655443
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
-.|+++|+||+|+|. |.+|+++||-||.||||++...+.+.-.. -...|++++ +.|+|+..+.|+.+|.
T Consensus 406 --F~HndfVTcVaFnPv----DDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvc---y~PdGk~avIGt~~G~ 474 (712)
T KOG0283|consen 406 --FSHNDFVTCVAFNPV----DDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVC---YSPDGKGAVIGTFNGY 474 (712)
T ss_pred --EecCCeeEEEEeccc----CCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEE---eccCCceEEEEEeccE
Confidence 579999999999884 88999999999999999999877766553 448999998 8999999999999999
Q ss_pred EEEEeCCCCCccceec----ccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 239 LILWSADHGQDSRELV----PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~----~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
+++|+....+....+. .... ..|. .|+++.|.|. +...+++.+.|..|||+|.++...+..|+.....
T Consensus 475 C~fY~t~~lk~~~~~~I~~~~~Kk-~~~~-rITG~Q~~p~--~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~---- 546 (712)
T KOG0283|consen 475 CRFYDTEGLKLVSDFHIRLHNKKK-KQGK-RITGLQFFPG--DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT---- 546 (712)
T ss_pred EEEEEccCCeEEEeeeEeeccCcc-ccCc-eeeeeEecCC--CCCeEEEecCCCceEEEeccchhhhhhhcccccC----
Confidence 9999998766443210 0011 1133 7999999993 5557888899999999999888877775432211
Q ss_pred CceeEEEeCCCCCEE-EEecCCe--EEEccC
Q 000709 315 VASWCHPRAPNLDIL-TCVKDSH--IWAIEH 342 (1339)
Q Consensus 315 ~~V~svafspdg~iL-s~s~Dg~--LWDi~t 342 (1339)
..-....|+.||+.| ++++|.. ||++..
T Consensus 547 ~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 547 SSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 122367788899955 6777775 798764
No 61
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9e-21 Score=197.08 Aligned_cols=310 Identities=16% Similarity=0.178 Sum_probs=229.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceE
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
.-+..|.+++|||.|.+.+.|+...+.+|.-+..-..++ ..|.. .+
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r---~~hea------------------------------~~- 75 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR---HAHEA------------------------------AK- 75 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcc---ccccc------------------------------cc-
Confidence 346789999999999999999999999998775311111 01100 00
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE---EecCCcee-eccccccCC
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL---DLVTMRGR-DIPKQELDN 164 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w---D~~t~~~~-~v~~~~~h~ 164 (1339)
....++ .....||.+.|+|.+|+|+|+ ++++|+.|+.|.+ +..+.+.. .-..+..|.
T Consensus 76 ----~pp~v~--------------~kr~khhkgsiyc~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhd 136 (350)
T KOG0641|consen 76 ----QPPSVL--------------CKRNKHHKGSIYCTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD 136 (350)
T ss_pred ----CCCeEE--------------eeeccccCccEEEEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecC
Confidence 000111 123456788999999999998 9999999999954 33332111 112356789
Q ss_pred CCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
+.|+.++|+-.. +..+.++++++ .|..|++-|...++....+. ||++.|.++ ++-++-.|++|+.|.+|++||
T Consensus 137 gtirdl~fld~~-~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilal----yswn~~m~~sgsqdktirfwd 210 (350)
T KOG0641|consen 137 GTIRDLAFLDDP-ESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILAL----YSWNGAMFASGSQDKTIRFWD 210 (350)
T ss_pred CceeeeEEecCC-CcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEE----EEecCcEEEccCCCceEEEEe
Confidence 999999997542 23456777765 67788888999999998887 999999988 455889999999999999999
Q ss_pred CCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 244 ADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 244 l~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
++-..++..+...+.-.| ....|.+++..| .+++|++|-.|....+||++.++.++++ ..|+..|.|+.|
T Consensus 211 lrv~~~v~~l~~~~~~~glessavaav~vdp---sgrll~sg~~dssc~lydirg~r~iq~f------~phsadir~vrf 281 (350)
T KOG0641|consen 211 LRVNSCVNTLDNDFHDGGLESSAVAAVAVDP---SGRLLASGHADSSCMLYDIRGGRMIQRF------HPHSADIRCVRF 281 (350)
T ss_pred eeccceeeeccCcccCCCcccceeEEEEECC---CcceeeeccCCCceEEEEeeCCceeeee------CCCccceeEEEe
Confidence 998887765321111111 124589999999 7999999999999999999999999984 679999999999
Q ss_pred CCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 323 APNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 323 spdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
+|... +|+|+.|.. +-|+.. ++....++.+...|++ .+..+.|||+ ..-+.+.+.|.++ .+|.
T Consensus 282 sp~a~yllt~syd~~ikltdlqg-----------dla~el~~~vv~ehkd-k~i~~rwh~~-d~sfisssadkt~-tlwa 347 (350)
T KOG0641|consen 282 SPGAHYLLTCSYDMKIKLTDLQG-----------DLAHELPIMVVAEHKD-KAIQCRWHPQ-DFSFISSSADKTA-TLWA 347 (350)
T ss_pred CCCceEEEEecccceEEEeeccc-----------chhhcCceEEEEeccC-ceEEEEecCc-cceeeeccCcceE-EEec
Confidence 99977 559999986 455552 2223345666777777 7888999994 6668888889987 6896
Q ss_pred C
Q 000709 400 P 400 (1339)
Q Consensus 400 ~ 400 (1339)
+
T Consensus 348 ~ 348 (350)
T KOG0641|consen 348 L 348 (350)
T ss_pred c
Confidence 4
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=242.04 Aligned_cols=245 Identities=20% Similarity=0.301 Sum_probs=212.5
Q ss_pred eEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 4 LKA-FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 4 l~~-L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
+.. |.||.+.|++++|..-+.+|++|+.|.+++|||..+|+|...+. +|.+.+.++......+++|+
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs----------- 308 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGS----------- 308 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeecc-----------
Confidence 344 99999999999999878899999999999999999999999999 77888888887777777765
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~ 161 (1339)
.|.+|++|++.++.++ ....+ |...|+++..+ +. ++++|+.|+.| +||+.++++ +....
T Consensus 309 ----------~D~tVkVW~v~n~~~l----~l~~~-h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~c--l~sl~ 368 (537)
T KOG0274|consen 309 ----------RDNTVKVWDVTNGACL----NLLRG-HTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGKC--LKSLS 368 (537)
T ss_pred ----------CCceEEEEeccCcceE----EEecc-ccccEEEEEec--CC-EEEEEecCceEEEEEhhhcee--eeeec
Confidence 5899999999999886 34455 58999999998 44 89999999988 789997754 66788
Q ss_pred cCCCCeEEEEEeeccccCCC-CEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 162 LDNKSLVCMEFLSRSAVGDV-PLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg-~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
+|..+|.++.+ ++ ..+++|+.|++|++||+++. +++..+. +|...|+++. ..+++|++++.|++|
T Consensus 369 gH~~~V~sl~~-------~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~-----~~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 369 GHTGRVYSLIV-------DSENRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL-----LRDNFLVSSSADGTI 435 (537)
T ss_pred CCcceEEEEEe-------cCcceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc-----cccceeEeccccccE
Confidence 99999999988 44 89999999999999999999 8999987 9999997774 367899999999999
Q ss_pred EEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 000709 240 ILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1339)
++||..++++++. +.+ |...|..+++. ...+++++.|+++++||++++++.+.+
T Consensus 436 k~WD~~~~~~~~~------~~~~~~~~v~~l~~~-----~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 436 KLWDAEEGECLRT------LEGRHVGGVSALALG-----KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEeecccCceeee------eccCCcccEEEeecC-----cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999998776 455 66888888875 358999999999999999999987764
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.7e-22 Score=208.43 Aligned_cols=268 Identities=19% Similarity=0.264 Sum_probs=213.3
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
..|.+.|.++...+.+. ........+.+..++|+++....+++++.||.+++ |. +.....+..++.|...|.++.
T Consensus 36 G~G~L~ile~~~~~gi~---e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~-~~~s~Pi~~~kEH~~EV~Svd 111 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQ---ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL-TMPSKPIHKFKEHKREVYSVD 111 (311)
T ss_pred cCceEEEEecCCCCCeE---EEEeeecccceeEeeecCCCcceEEEEecCceEEEecc-CCCCcchhHHHhhhhheEEec
Confidence 46778888876444432 11222235678999999999889999999999965 73 334446677889999999999
Q ss_pred EeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 000709 172 FLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1339)
Q Consensus 172 f~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~ 251 (1339)
|.+ -++..++++|.|++|++|+....+.+.++. ||..-|....| .+..+++++++|.|+++++||++.....
T Consensus 112 wn~----~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~-gh~~~Iy~a~~--sp~~~nlfas~Sgd~~l~lwdvr~~gk~- 183 (311)
T KOG0277|consen 112 WNT----VRRRIFLTSSWDGTIKLWDPNRPNSVQTFN-GHNSCIYQAAF--SPHIPNLFASASGDGTLRLWDVRSPGKF- 183 (311)
T ss_pred ccc----ccceeEEeeccCCceEeecCCCCcceEeec-CCccEEEEEec--CCCCCCeEEEccCCceEEEEEecCCCce-
Confidence 953 356778888999999999999999999997 99999999984 4557889999999999999999875322
Q ss_pred eecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EE-
Q 000709 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL- 329 (1339)
Q Consensus 252 ~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iL- 329 (1339)
..+..|...+.++.|+.. +..+++||+.|+.||+||+++-+ .++..+.+|.-+|+.+.|||... +|
T Consensus 184 -----~~i~ah~~Eil~cdw~ky--~~~vl~Tg~vd~~vr~wDir~~r-----~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 184 -----MSIEAHNSEILCCDWSKY--NHNVLATGGVDNLVRGWDIRNLR-----TPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred -----eEEEeccceeEeeccccc--CCcEEEecCCCceEEEEehhhcc-----ccceeecCCceEEEEEecCcchhhHhh
Confidence 236889999999999985 77899999999999999998755 23455799999999999999865 44
Q ss_pred EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 330 TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 330 s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
+++.|-+ |||...... .+.+...|.. -+..+.|++..+.++|+.+.|+.+ .+|++
T Consensus 252 SasYDmT~riw~~~~~ds--------------~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l-~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDS--------------AIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELL-YVWNP 308 (311)
T ss_pred hccccceEEecccccchh--------------hhhhhhccce-EEeccccccccCceeeecccccce-eeecc
Confidence 7888875 999875421 1223344555 799999999999999999999997 89974
No 64
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-21 Score=206.75 Aligned_cols=287 Identities=13% Similarity=0.104 Sum_probs=219.3
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
-..|+||..+++.+.|+.+|.+|+|++.|.+..||=..+|+.+.++. +|.+.|+++. .+.+.+++|+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGS---------- 71 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGS---------- 71 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeecc----------
Confidence 34579999999999999999999999999999999999999999998 7889999988 6677888886
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC-----cEE-EEEecCCc--
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN-----KAI-FLDLVTMR-- 153 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d-----g~I-~wD~~t~~-- 153 (1339)
.|.++++||+.+++++. .-.....|..+.|+.+|. +++.+.++ +.+ ++|++...
T Consensus 72 -----------AD~t~kLWDv~tGk~la------~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 72 -----------ADQTAKLWDVETGKQLA------TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred -----------ccceeEEEEcCCCcEEE------EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhh
Confidence 58899999999998863 122256799999999997 55555433 344 34665221
Q ss_pred --e-eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEE
Q 000709 154 --G-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALL 230 (1339)
Q Consensus 154 --~-~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~L 230 (1339)
. ..+.....+...++.+-| +|-+.+|++|..||.|.+||.++++....-...|...|+.++ ++++..++
T Consensus 134 ~~s~ep~~kI~t~~skit~a~W-----g~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q---~s~d~T~F 205 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDSKITSALW-----GPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQ---FSRDRTYF 205 (327)
T ss_pred hcccCceEEecCCccceeeeee-----cccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccc---ccCCcceE
Confidence 1 112233455688999999 778999999999999999999998655544448999999998 89999999
Q ss_pred EEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE-eCCCc-EEEEECCCCeeEEEe----
Q 000709 231 VSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKT-LAIWDTVSFKELRRI---- 304 (1339)
Q Consensus 231 aSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg-s~Dg~-IrIWDl~t~~~l~~~---- 304 (1339)
+++|.|.+-++||+.+-.+++++ ....+|++.+++|. .+.++.| +.+-. |--=+.+.|+--.+|
T Consensus 206 iT~s~Dttakl~D~~tl~v~Kty-------~te~PvN~aaisP~---~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTLEVLKTY-------TTERPVNTAAISPL---LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred EecccCccceeeeccceeeEEEe-------eecccccceecccc---cceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 99999999999999998877763 24678999999993 4445444 44321 222222222211111
Q ss_pred --cCCCcccccCCceeEEEeCCCCC-EEEEecCCeE
Q 000709 305 --KPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI 337 (1339)
Q Consensus 305 --~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~L 337 (1339)
+.+....+|-++|++++|||+|+ +.+||+||.|
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~V 311 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYV 311 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceE
Confidence 12334689999999999999999 5588999963
No 65
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.88 E-value=8.2e-22 Score=208.05 Aligned_cols=283 Identities=12% Similarity=0.121 Sum_probs=228.5
Q ss_pred EEecCCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccc--eeEeeccccCCCcc
Q 000709 5 KAFRPTNDKIVKIQLHP---THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLE--KLAEGELEHKGKPT 79 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSP---dg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~--~Lasgs~d~~gk~~ 79 (1339)
.+-.||+..|..++||| +|-+|++++.||.-.+-+-++|..+.+|. +|.+.++..+.+.. .-+++.
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaa-------- 78 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAA-------- 78 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhc--------
Confidence 34579999999999985 78899999999999999999999999999 66677666653322 223322
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~ 158 (1339)
.|-+-++||.-++..++ .-.|..-|.+++|+.|.+ .|++|+.+.++++ |++..+- ...
T Consensus 79 -------------adftakvw~a~tgdelh------sf~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~A-pp~ 137 (334)
T KOG0278|consen 79 -------------ADFTAKVWDAVTGDELH------SFEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKA-PPK 137 (334)
T ss_pred -------------ccchhhhhhhhhhhhhh------hhhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCC-Cch
Confidence 36678899988886652 222366799999999997 8999999999976 8776543 334
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
....|.+.|+.+.| ....+.|++.++|++||+||.+++..++++. .+..|+++. .+++|++|.+ ...+.
T Consensus 138 E~~ghtg~Ir~v~w-----c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlE---vs~dG~ilTi-a~gss 206 (334)
T KOG0278|consen 138 EISGHTGGIRTVLW-----CHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLE---VSQDGRILTI-AYGSS 206 (334)
T ss_pred hhcCCCCcceeEEE-----eccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCccee---eccCCCEEEE-ecCce
Confidence 56789999999999 4566778888999999999999999999986 778899997 7899987765 56789
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
|++||..+-..++.+ .....|.+...+| +...+++|+.|..++.||+.++..+..+ ..+|.++|-
T Consensus 207 V~Fwdaksf~~lKs~-------k~P~nV~SASL~P---~k~~fVaGged~~~~kfDy~TgeEi~~~-----nkgh~gpVh 271 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSY-------KMPCNVESASLHP---KKEFFVAGGEDFKVYKFDYNTGEEIGSY-----NKGHFGPVH 271 (334)
T ss_pred eEEeccccccceeec-------cCccccccccccC---CCceEEecCcceEEEEEeccCCceeeec-----ccCCCCceE
Confidence 999999987766542 1234588999999 6789999999999999999999987763 479999999
Q ss_pred EEEeCCCCCE-EEEecCCe--EEEccCC
Q 000709 319 CHPRAPNLDI-LTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 319 svafspdg~i-Ls~s~Dg~--LWDi~t~ 343 (1339)
|+.|+|+|.+ .+||+||+ ||....+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999999995 47899997 7987643
No 66
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=1.9e-21 Score=240.15 Aligned_cols=305 Identities=14% Similarity=0.148 Sum_probs=227.4
Q ss_pred ecCCC-CCEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 7 FRPTN-DKIVKIQLHPTHPWLVTAD--ASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 7 L~gHs-~~V~~vafSPdg~~LaSgs--~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+-+|. ..|.+++.||+|..++||+ .||.++||+.+. .+.+..
T Consensus 8 wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~--vl~~~~--------------------------------- 52 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDP--VLDEKE--------------------------------- 52 (942)
T ss_pred ccccCCeeEEEEEecCCceeEecCCccccccceeecccc--ccchhh---------------------------------
Confidence 34454 5799999999999999999 899999999763 111111
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC----------C
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------M 152 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t----------~ 152 (1339)
.||.. +..... ....|...|.|+.|++||+ +|++|++|+.+ +|.... +
T Consensus 53 ---------------~~~~~----l~k~l~-~m~~h~~sv~CVR~S~dG~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g 111 (942)
T KOG0973|consen 53 ---------------EKNEN----LPKHLC-TMDDHDGSVNCVRFSPDGS-YLASGSDDRLVMIWERAEIGSGTVFGSTG 111 (942)
T ss_pred ---------------hhhcc----cchhhe-eeccccCceeEEEECCCCC-eEeeccCcceEEEeeecccCCcccccccc
Confidence 11111 000112 2233488999999999998 99999999998 675441 0
Q ss_pred ------ceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC
Q 000709 153 ------RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1339)
Q Consensus 153 ------~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spd 226 (1339)
+.+.+..+..|...|..+.| +|++.++++++.|++|.|||.++.+.++.+. +|.+.|-.+. +.|-
T Consensus 112 ~~~~vE~wk~~~~l~~H~~DV~Dv~W-----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs---~DP~ 182 (942)
T KOG0973|consen 112 GAKNVESWKVVSILRGHDSDVLDVNW-----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVS---WDPI 182 (942)
T ss_pred cccccceeeEEEEEecCCCccceecc-----CCCccEEEEecccceEEEEccccceeeeeee-cccccccceE---ECCc
Confidence 12245567889999999999 8899999999999999999999999999997 9999999998 6999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC----CCcEEEEECCCCeeEE
Q 000709 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA----DKTLAIWDTVSFKELR 302 (1339)
Q Consensus 227 g~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~----Dg~IrIWDl~t~~~l~ 302 (1339)
|++|+|-++|++|+||++.+....+.+...+.-..-..-...+.|+| ||++|++.-. -.++.|.+-.+++.-.
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP---DG~~las~nA~n~~~~~~~IieR~tWk~~~ 259 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP---DGHHLASPNAVNGGKSTIAIIERGTWKVDK 259 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC---CcCeecchhhccCCcceeEEEecCCceeee
Confidence 99999999999999999877655554333332222334578899999 8999998743 3467788777666544
Q ss_pred EecCCCcccccCCceeEEEeCCC------C---------C--EE-EEecCCe--EEEccCCcccccccCccccCCCCCCe
Q 000709 303 RIKPVPKLACHSVASWCHPRAPN------L---------D--IL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQ 362 (1339)
Q Consensus 303 ~~~~~~~l~~H~~~V~svafspd------g---------~--iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~ 362 (1339)
. +.||..++.++.|+|. . . ++ +||.|+. ||..... +|+.
T Consensus 260 ~------LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~---------------RPl~ 318 (942)
T KOG0973|consen 260 D------LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP---------------RPLF 318 (942)
T ss_pred e------eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC---------------Cchh
Confidence 4 6899999999999973 2 0 34 5789986 8987643 2333
Q ss_pred EEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 363 tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
....-....|..+.|+| +|..|+.++.||.| .++...+
T Consensus 319 vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV-~~i~Fee 356 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSP-DGFSLFACSLDGTV-ALIHFEE 356 (942)
T ss_pred hhhhhhcCceeeeeEcC-CCCeEEEEecCCeE-EEEEcch
Confidence 33333334799999999 68889999999998 4665554
No 67
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=221.90 Aligned_cols=302 Identities=17% Similarity=0.236 Sum_probs=208.3
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
..|++|+..|.++++.|.|-.|+||+.|.+|++||+....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMd---------------------------------------- 200 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMD---------------------------------------- 200 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEeccccc----------------------------------------
Confidence 4689999999999999999999999999999999986311
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCce----------
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG---------- 154 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~---------- 154 (1339)
-..+-+ ..+.-.....|+++.|++.|..+|++.+.....++|-.....
T Consensus 201 ----------as~~~f------------r~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI 258 (641)
T KOG0772|consen 201 ----------ASMRSF------------RQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI 258 (641)
T ss_pred ----------ccchhh------------hccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh
Confidence 000000 001111144688899999998777777666666665432211
Q ss_pred eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-EEEEEe----cCCCCCeeEEEEeeeCCCCCE
Q 000709 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYT----GGHKGSISCLMTFMASSGEAL 229 (1339)
Q Consensus 155 ~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~-~i~~l~----~gH~~~V~sl~wf~~spdg~~ 229 (1339)
+.....++|...++|.+|||. +...+++++.||++||||+...+ ..+.+. .+..-.++++. |++++++
T Consensus 259 ~Dm~nTKGHia~lt~g~whP~----~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~---~nrdg~~ 331 (641)
T KOG0772|consen 259 RDMYNTKGHIAELTCGCWHPD----NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCA---WNRDGKL 331 (641)
T ss_pred hhhhccCCceeeeeccccccC----cccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeee---cCCCcch
Confidence 133445788999999999874 45678999999999999997542 222222 23344666665 7999999
Q ss_pred EEEEeCCCcEEEEeCCCCCccceeccccccccccc--ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe-eEEEecC
Q 000709 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG--GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKP 306 (1339)
Q Consensus 230 LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~--~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~ 306 (1339)
|++|+.||.|.+|+......... ...-..|.. .|+||.|++ +|++|++-|.|+++++||++..+ ++..+..
T Consensus 332 iAagc~DGSIQ~W~~~~~~v~p~---~~vk~AH~~g~~Itsi~FS~---dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tg 405 (641)
T KOG0772|consen 332 IAAGCLDGSIQIWDKGSRTVRPV---MKVKDAHLPGQDITSISFSY---DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTG 405 (641)
T ss_pred hhhcccCCceeeeecCCcccccc---eEeeeccCCCCceeEEEecc---ccchhhhccCCCceeeeeccccccchhhhcC
Confidence 99999999999999854432111 122367877 899999999 89999999999999999998654 4443222
Q ss_pred CCcccccCCceeEEEeCCCCCEE-EEe------cCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEE
Q 000709 307 VPKLACHSVASWCHPRAPNLDIL-TCV------KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVA 377 (1339)
Q Consensus 307 ~~~l~~H~~~V~svafspdg~iL-s~s------~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~ 377 (1339)
+.+ .-.-+.++|||+.++| +|. ..++ ++|..+.. ....+..... .|..+.|
T Consensus 406 L~t----~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---------------~v~ki~i~~a-Svv~~~W 465 (641)
T KOG0772|consen 406 LPT----PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---------------TVYKIDISTA-SVVRCLW 465 (641)
T ss_pred CCc----cCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---------------eEEEecCCCc-eEEEEee
Confidence 111 1234578999999966 443 1123 45544321 1222323333 6888999
Q ss_pred ecCCCcEEEEEECCCeEEEEecCCC
Q 000709 378 HSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 378 sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
|| .-+.|..|+.||.+...||...
T Consensus 466 hp-kLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 466 HP-KLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred cc-hhhheeeecCCCceEEEECccc
Confidence 99 6788999999999866677653
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.5e-21 Score=220.12 Aligned_cols=273 Identities=17% Similarity=0.230 Sum_probs=216.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
.+.|.+++|+|..++=+.....-.+.|++..+...++++... .+.++.++ .||++|+.|.
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srF-k~~v~s~~fR~DG~LlaaGD----------------- 87 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRF-KDVVYSVDFRSDGRLLAAGD----------------- 87 (487)
T ss_pred cCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhh-ccceeEEEeecCCeEEEccC-----------------
Confidence 367999999998885444445668999999888777665422 34555555 8999999886
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCe
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSL 167 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V 167 (1339)
..|.|+++|+.+...+ .....| ..++..+.|+|++..++++|++|+.+.| |+.+... ......|.++|
T Consensus 88 ----~sG~V~vfD~k~r~iL----R~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYV 156 (487)
T KOG0310|consen 88 ----ESGHVKVFDMKSRVIL----RQLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYV 156 (487)
T ss_pred ----CcCcEEEeccccHHHH----HHHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCCccee
Confidence 5789999996663332 344444 8899999999999989999999999955 7776643 33568999999
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
+|.+|+| .++..+++||.||.||+||.++. ..+..+ .|..+|..+. +-|.|.+|++++. ..|+|||+.+
T Consensus 157 R~g~~~~----~~~hivvtGsYDg~vrl~DtR~~~~~v~el--nhg~pVe~vl---~lpsgs~iasAgG-n~vkVWDl~~ 226 (487)
T KOG0310|consen 157 RCGDISP----ANDHIVVTGSYDGKVRLWDTRSLTSRVVEL--NHGCPVESVL---ALPSGSLIASAGG-NSVKVWDLTT 226 (487)
T ss_pred Eeecccc----CCCeEEEecCCCceEEEEEeccCCceeEEe--cCCCceeeEE---EcCCCCEEEEcCC-CeEEEEEecC
Confidence 9999975 35678999999999999999976 666666 5999999997 6788889999774 5899999997
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
|...- ..+..|...|+|+++.. ++..|++||-|+.|++||+.+.+.++.+ .-.++|.+++.+|++
T Consensus 227 G~qll-----~~~~~H~KtVTcL~l~s---~~~rLlS~sLD~~VKVfd~t~~Kvv~s~-------~~~~pvLsiavs~dd 291 (487)
T KOG0310|consen 227 GGQLL-----TSMFNHNKTVTCLRLAS---DSTRLLSGSLDRHVKVFDTTNYKVVHSW-------KYPGPVLSIAVSPDD 291 (487)
T ss_pred Cceeh-----hhhhcccceEEEEEeec---CCceEeecccccceEEEEccceEEEEee-------ecccceeeEEecCCC
Confidence 65432 12455999999999998 7899999999999999999999988874 456788999999998
Q ss_pred CEE-EEecCCeE
Q 000709 327 DIL-TCVKDSHI 337 (1339)
Q Consensus 327 ~iL-s~s~Dg~L 337 (1339)
+.+ .|..||.+
T Consensus 292 ~t~viGmsnGlv 303 (487)
T KOG0310|consen 292 QTVVIGMSNGLV 303 (487)
T ss_pred ceEEEeccccee
Confidence 855 66677764
No 69
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=3.2e-21 Score=227.28 Aligned_cols=278 Identities=15% Similarity=0.231 Sum_probs=210.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
-+.+.||...|..+++.+.. ++++++.||++++|+-..++.+......
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~------------------------------- 54 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFE------------------------------- 54 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecc-------------------------------
Confidence 47899999999999987654 8999999999999997654433321100
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeee-eeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFAS-PPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~s-lafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~ 161 (1339)
++ .+.|.+ ++|-+..+..+++|+.|..+ +|...... .+..+.
T Consensus 55 ---------------------------------~~-~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~--P~~~Lk 98 (745)
T KOG0301|consen 55 ---------------------------------GP-KGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE--PLYTLK 98 (745)
T ss_pred ---------------------------------cC-cceeeccceeccccCcceEeecccceEEEEecCCCC--chhhhh
Confidence 00 111222 44444333368889999888 44555443 456689
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
+|...|+|+.. ..++. +++||.|.++++|-.. ++...+. +|...|+.+. .-|++ .++|||.|.+|++
T Consensus 99 gH~snVC~ls~-----~~~~~-~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~---~l~e~-~~vTgsaDKtIkl 165 (745)
T KOG0301|consen 99 GHKSNVCSLSI-----GEDGT-LISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVA---SLPEN-TYVTGSADKTIKL 165 (745)
T ss_pred ccccceeeeec-----CCcCc-eEecccccceEEecch--hhhcccC-Ccchheeeee---ecCCC-cEEeccCcceeee
Confidence 99999999987 34555 9999999999999764 5555665 9999999997 23333 9999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
|.- +++++. +.||.+.|..+++-+ ...++|++.||.|++|++ +|+++.+ +.+|++-|+++.
T Consensus 166 Wk~--~~~l~t------f~gHtD~VRgL~vl~----~~~flScsNDg~Ir~w~~-~ge~l~~------~~ghtn~vYsis 226 (745)
T KOG0301|consen 166 WKG--GTLLKT------FSGHTDCVRGLAVLD----DSHFLSCSNDGSIRLWDL-DGEVLLE------MHGHTNFVYSIS 226 (745)
T ss_pred ccC--Cchhhh------hccchhheeeeEEec----CCCeEeecCCceEEEEec-cCceeee------eeccceEEEEEE
Confidence 985 454443 799999999999997 457899999999999999 6777776 689999999999
Q ss_pred -eCCCCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000709 322 -RAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 322 -fspdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriW 398 (1339)
..+++.++++|+|++ ||+... +.+.+..... .||++.+-+ ++. |++|+.||.| |+|
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~e-----------------~~q~I~lPtt-siWsa~~L~-NgD-Ivvg~SDG~V-rVf 285 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKDE-----------------CVQVITLPTT-SIWSAKVLL-NGD-IVVGGSDGRV-RVF 285 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecCc-----------------eEEEEecCcc-ceEEEEEee-CCC-EEEeccCceE-EEE
Confidence 555666889999997 898762 2445544444 799999988 566 8999999997 899
Q ss_pred cCCC
Q 000709 399 DPRS 402 (1339)
Q Consensus 399 d~~~ 402 (1339)
..++
T Consensus 286 T~~k 289 (745)
T KOG0301|consen 286 TVDK 289 (745)
T ss_pred Eecc
Confidence 7663
No 70
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=209.90 Aligned_cols=326 Identities=15% Similarity=0.203 Sum_probs=233.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
++.|.||.+.|+.++.....+.+.+++.|.+-+||.+++|.|+.++. +|.+.+.++. +.+.++++++
T Consensus 141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaS---------- 209 (481)
T KOG0300|consen 141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTAS---------- 209 (481)
T ss_pred hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEcc----------
Confidence 57899999999999999999999999999999999999999999998 6666666665 5566666655
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEE---EecCcEEEEEecCCceeecc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVI---CCVNKAIFLDLVTMRGRDIP 158 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLas---gs~dg~I~wD~~t~~~~~v~ 158 (1339)
.|++-.||...-+-.. ........|.+. -.+.-+ |...-... -+++..|+. .+.
T Consensus 210 -----------GD~taHIW~~av~~~v--P~~~a~~~hSsE-eE~e~s-De~~~d~d~~~~sD~~tiRv--------Pl~ 266 (481)
T KOG0300|consen 210 -----------GDETAHIWKAAVNWEV--PSNNAPSDHSSE-EEEEHS-DEHNRDTDSSEKSDGHTIRV--------PLM 266 (481)
T ss_pred -----------CCcchHHHHHhhcCcC--CCCCCCCCCCch-hhhhcc-cccccccccccccCCceeee--------eee
Confidence 4677777764332111 001111111110 000000 00000000 112223322 233
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
.+.+|...|.|..|+ ..|+.+++++.|.+..+||++++..+..+. ||....+.++ -+|..++++++|.|.+
T Consensus 267 ~ltgH~~vV~a~dWL-----~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcs---tHptQrLVvTsSrDtT 337 (481)
T KOG0300|consen 267 RLTGHRAVVSACDWL-----AGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCS---THPTQRLVVTSSRDTT 337 (481)
T ss_pred eeeccccceEehhhh-----cCcceeeeeeccccceeeeeccCceecccc-Ccchhccccc---cCCcceEEEEeccCce
Confidence 457899999999995 568999999999999999999999999997 9999999887 7899999999999999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe-eEEEecCCCcccccCCce
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V 317 (1339)
.++||++.. +. ....+.||...|+++.|.. +..+++|++|.+|++||+++.+ ++.++ .....+
T Consensus 338 FRLWDFRea--I~---sV~VFQGHtdtVTS~vF~~----dd~vVSgSDDrTvKvWdLrNMRsplATI-------RtdS~~ 401 (481)
T KOG0300|consen 338 FRLWDFREA--IQ---SVAVFQGHTDTVTSVVFNT----DDRVVSGSDDRTVKVWDLRNMRSPLATI-------RTDSPA 401 (481)
T ss_pred eEeccchhh--cc---eeeeecccccceeEEEEec----CCceeecCCCceEEEeeeccccCcceee-------ecCCcc
Confidence 999999843 22 2456899999999999997 5689999999999999998654 33332 224567
Q ss_pred eEEEeCCCCCEEEEecCCe---EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCC-cEEEEEECCCe
Q 000709 318 WCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP-HLVATGTNVGV 393 (1339)
Q Consensus 318 ~svafspdg~iLs~s~Dg~---LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~-~lLatGs~DG~ 393 (1339)
..++.+..+.+|+--.|++ |||++...... .|...-.+|.. .|.|++|..+.+ .-|++++.|..
T Consensus 402 NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-----------lPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~ 469 (481)
T KOG0300|consen 402 NRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-----------LPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRM 469 (481)
T ss_pred ceeEeecCCceEEeccCCceEEEEecCCCcccc-----------CCcccccccce-eeeeeeccccCcccccccccccce
Confidence 7888888888999888875 89988542211 11223345665 899999986432 34778888888
Q ss_pred EEEEecCC
Q 000709 394 IISEFDPR 401 (1339)
Q Consensus 394 IlriWd~~ 401 (1339)
+ .-|.+.
T Consensus 470 v-~gW~in 476 (481)
T KOG0300|consen 470 V-AGWKIN 476 (481)
T ss_pred e-eeeEec
Confidence 7 588765
No 71
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.88 E-value=7e-20 Score=219.45 Aligned_cols=333 Identities=14% Similarity=0.171 Sum_probs=248.6
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccce-eEeeccccCCCcc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEK-LAEGELEHKGKPT 79 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~-Lasgs~d~~gk~~ 79 (1339)
.+.+|++|.++|+++.=+|--..+|.|..+|+|.|+|++.++.+.+|+. ..+.|..++ .||.. |+++.
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~-d~g~VtslSFrtDG~p~las~~-------- 264 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ-DWGRVTSLSFRTDGNPLLASGR-------- 264 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc-cccceeEEEeccCCCeeEEecc--------
Confidence 3789999999999999999999999999999999999999999999983 245566665 56654 34432
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EE--EecCCceee
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRD 156 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~w--D~~t~~~~~ 156 (1339)
..|.+.+||++..+.+ ......|.+.+....|.+..+ ++++.+.|..+ .| |...+..+.
T Consensus 265 -------------~~G~m~~wDLe~kkl~----~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~ 326 (910)
T KOG1539|consen 265 -------------SNGDMAFWDLEKKKLI----NVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLKVWVFDSGDGVPRL 326 (910)
T ss_pred -------------CCceEEEEEcCCCeee----eeeeccccCCcccceecCCCc-eEeeccCCCceeEEEeeCCCCcchh
Confidence 4689999999998765 334444477788889999776 88888877776 45 655554456
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC--------------------------------------
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM-------------------------------------- 198 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl-------------------------------------- 198 (1339)
+....+|..+..|+.|. ...|..+.+.+.|++.+.+++
T Consensus 327 LR~R~GHs~Pp~~irfy----~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 327 LRSRGGHSAPPSCIRFY----GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred eeeccCCCCCchheeee----ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 66678999999999996 345777777777776655554
Q ss_pred ---------------------------CCCeE-EEEEecCCC------CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000709 199 ---------------------------ISWKL-VRRYTGGHK------GSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1339)
Q Consensus 199 ---------------------------~t~~~-i~~l~~gH~------~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl 244 (1339)
+.... ...+ .+. ..+++++ .++.|++.+.|+..|+|-+|++
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L--~~~~~~~~~~~~~av~---vs~CGNF~~IG~S~G~Id~fNm 477 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL--DPKRFKKDDINATAVC---VSFCGNFVFIGYSKGTIDRFNM 477 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEe--cCccccccCcceEEEE---EeccCceEEEeccCCeEEEEEc
Confidence 21111 0111 122 3455554 7889999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
.+|-....+. .-..|.+.|++++... -++.+++++.||.+++||......+..++ ....+.++..+.
T Consensus 478 QSGi~r~sf~---~~~ah~~~V~gla~D~---~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-------l~~~~~~iv~hr 544 (910)
T KOG1539|consen 478 QSGIHRKSFG---DSPAHKGEVTGLAVDG---TNRLLVSAGADGILKFWDFKKKVLKKSLR-------LGSSITGIVYHR 544 (910)
T ss_pred ccCeeecccc---cCccccCceeEEEecC---CCceEEEccCcceEEEEecCCcceeeeec-------cCCCcceeeeee
Confidence 9987655421 1257999999999986 57899999999999999999888666642 223455677777
Q ss_pred CCCEEEE-ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 325 NLDILTC-VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 325 dg~iLs~-s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
...+++. ..|-. ++|+.+.. -...|.+|++ +|+.++||| ++..|++++.|+.| |+||+.
T Consensus 545 ~s~l~a~~~ddf~I~vvD~~t~k---------------vvR~f~gh~n-ritd~~FS~-DgrWlisasmD~tI-r~wDlp 606 (910)
T KOG1539|consen 545 VSDLLAIALDDFSIRVVDVVTRK---------------VVREFWGHGN-RITDMTFSP-DGRWLISASMDSTI-RTWDLP 606 (910)
T ss_pred hhhhhhhhcCceeEEEEEchhhh---------------hhHHhhcccc-ceeeeEeCC-CCcEEEEeecCCcE-EEEecc
Confidence 6665543 34433 78887652 2446778888 999999999 68889999999998 999976
Q ss_pred C
Q 000709 402 S 402 (1339)
Q Consensus 402 ~ 402 (1339)
+
T Consensus 607 t 607 (910)
T KOG1539|consen 607 T 607 (910)
T ss_pred C
Confidence 4
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.88 E-value=4.9e-22 Score=215.09 Aligned_cols=243 Identities=18% Similarity=0.286 Sum_probs=199.7
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeec------cccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI------PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v------~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
.+.+-|..|+|||+ +|++|+.||.| +||+.+++.+.- ..+..+.+.|.|+.| |.|...+++|+.||.
T Consensus 213 KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F-----SRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 213 KSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF-----SRDSEMLASGSQDGK 286 (508)
T ss_pred ccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee-----cccHHHhhccCcCCc
Confidence 55688899999998 99999999999 899988876432 123456889999999 889999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEee
Q 000709 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1339)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1339)
|++|.+++|.|+++|...|...|+|+. |+.|+..+++++.|.+||+.-+.+|+++++ ++||..-|+...|.
T Consensus 287 IKvWri~tG~ClRrFdrAHtkGvt~l~---FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE------frGHsSyvn~a~ft 357 (508)
T KOG0275|consen 287 IKVWRIETGQCLRRFDRAHTKGVTCLS---FSRDNSQILSASFDQTVRIHGLKSGKCLKE------FRGHSSYVNEATFT 357 (508)
T ss_pred EEEEEEecchHHHHhhhhhccCeeEEE---EccCcchhhcccccceEEEeccccchhHHH------hcCccccccceEEc
Confidence 999999999999999889999999998 899999999999999999999999999887 69999999999999
Q ss_pred ccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCeEEEccCCccccccc
Q 000709 273 RVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHIWAIEHPTYSALTR 350 (1339)
Q Consensus 273 p~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--iLs~s~Dg~LWDi~t~~~~~~~~ 350 (1339)
+ +|..+++++.||+|++|+..+.+|+.+|++. +..-.|.++-.-|... ++.|...++++-++...
T Consensus 358 ~---dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~----~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG------ 424 (508)
T KOG0275|consen 358 D---DGHHIISASSDGTVKVWHGKTTECLSTFKPL----GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG------ 424 (508)
T ss_pred C---CCCeEEEecCCccEEEecCcchhhhhhccCC----CCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc------
Confidence 8 8999999999999999999999999998764 3445677777777644 77888888766554210
Q ss_pred CccccCCCCCCeEEc---cCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 351 PLCELSSLVPPQVLA---HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 351 ~l~~~~~~~~~~tl~---~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
.-..++. ..+. ...+.+.+| .+..+.+.+.|+++ ..|...
T Consensus 425 --------QvVrsfsSGkREgG-dFi~~~lSp-kGewiYcigED~vl-YCF~~~ 467 (508)
T KOG0275|consen 425 --------QVVRSFSSGKREGG-DFINAILSP-KGEWIYCIGEDGVL-YCFSVL 467 (508)
T ss_pred --------eEEeeeccCCccCC-ceEEEEecC-CCcEEEEEccCcEE-EEEEee
Confidence 0011121 1223 466778899 67889999999986 455443
No 73
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.3e-20 Score=204.62 Aligned_cols=298 Identities=16% Similarity=0.176 Sum_probs=198.9
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
.+.+|+||.+.|++++|+.||++|+|++.|++|+||+++... .+.|
T Consensus 78 ~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~----~~eH------------------------------ 123 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE----NKEH------------------------------ 123 (420)
T ss_pred hhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh----hhhh------------------------------
Confidence 467899999999999999999999999999999999987511 1101
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-Ee--cC-Ccee--e
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DL--VT-MRGR--D 156 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~--~t-~~~~--~ 156 (1339)
++++ .....+ .-+.+.|.||-+.+++++-.+..+++ -. ++ |... .
T Consensus 124 -----------------------r~~R--~nve~d----hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~ 174 (420)
T KOG2096|consen 124 -----------------------RCIR--QNVEYD----HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHF 174 (420)
T ss_pred -----------------------hHhh--ccccCC----CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCccc
Confidence 0110 001111 24567899998877777766666633 21 11 1111 1
Q ss_pred cc-----ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000709 157 IP-----KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1339)
Q Consensus 157 v~-----~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~La 231 (1339)
+. ....|.-.+-.+-. ..++.+|++++.|..|.+|+++ |+.+..+. .....-+..+ .+|+|++++
T Consensus 175 v~~D~~~f~~kh~v~~i~iGi-----A~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aa---vSP~GRFia 244 (420)
T KOG2096|consen 175 VHIDNLEFERKHQVDIINIGI-----AGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAA---VSPDGRFIA 244 (420)
T ss_pred ccccccccchhcccceEEEee-----cCCceEEEEecCCCcEEEEecC-Cceeeeec-ccccccccee---eCCCCcEEE
Confidence 11 11223444555555 5678999999999999999999 88888875 3333333343 799999999
Q ss_pred EEeCCCcEEEEeCCCCC--ccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC----CeeEEEec
Q 000709 232 SGGSDGLLILWSADHGQ--DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS----FKELRRIK 305 (1339)
Q Consensus 232 SgS~DgtVrVWDl~tg~--~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t----~~~l~~~~ 305 (1339)
+++.---|+||++--++ ..++....+.|+||...|.+++|++ +...+++.|.||+++|||..- ++--..++
T Consensus 245 ~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn---~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk 321 (420)
T KOG2096|consen 245 VSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN---SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK 321 (420)
T ss_pred EecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC---CcceeEEEecCCcEEEeeccceEecCCCchHhh
Confidence 99999999999974322 2333345678999999999999999 889999999999999999862 11111111
Q ss_pred CC-CcccccCCceeEEEeCCCCCEEEEecCC--eEEEccCCcccccccCccccCCCCCCeEEc-cCCcccEEEEEEecCC
Q 000709 306 PV-PKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLA-HHKKLRVYCMVAHSLQ 381 (1339)
Q Consensus 306 ~~-~~l~~H~~~V~svafspdg~iLs~s~Dg--~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~-~~~~~~I~~la~sp~~ 381 (1339)
.. ..+..-...-..+..+|+|++++.+... .++..+++.. ...+. .|.. -|.|++|++ +
T Consensus 322 ~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~---------------~~~~e~~h~~-~Is~is~~~-~ 384 (420)
T KOG2096|consen 322 EGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKD---------------YPELEDIHST-TISSISYSS-D 384 (420)
T ss_pred cCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCcc---------------chhHHHhhcC-ceeeEEecC-C
Confidence 11 1122223334489999999988765444 4666665421 11222 2334 799999999 5
Q ss_pred CcEEEEEECCCe
Q 000709 382 PHLVATGTNVGV 393 (1339)
Q Consensus 382 ~~lLatGs~DG~ 393 (1339)
+.+++++++--.
T Consensus 385 g~~~atcGdr~v 396 (420)
T KOG2096|consen 385 GKYIATCGDRYV 396 (420)
T ss_pred CcEEeeecceee
Confidence 666777765433
No 74
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=200.89 Aligned_cols=270 Identities=18% Similarity=0.245 Sum_probs=208.7
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCccceEEec---cccceeEeeccccCCCccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKA-GGVDQRRLVG---AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~-~~~~~i~~vs---~d~~~Lasgs~d~~gk~~~ 80 (1339)
+.+++|...|.+|+|+.+|..|++|+.|++++||+++..+....... +|.+.+-.++ +....+++.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas--------- 84 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATAS--------- 84 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEec---------
Confidence 66889999999999999999999999999999999997765554432 3333333332 2333444443
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
.|..|++||...+++.... .. ...=.-+.|+|+|+ .++++..|..+ .+|.++.+...
T Consensus 85 ------------~dk~ir~wd~r~~k~~~~i-----~~-~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~--- 142 (313)
T KOG1407|consen 85 ------------GDKTIRIWDIRSGKCTARI-----ET-KGENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVN--- 142 (313)
T ss_pred ------------CCceEEEEEeccCcEEEEe-----ec-cCcceEEEEcCCCC-EEEEecCcccEEEEEecccceee---
Confidence 5889999999999887411 11 11123478999998 55555555544 66887764322
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
.......+..+.| +-++.+++.-+..|.|.|.....-+.+..+. +|.....|+. |+|+|++|++|+.|-.|
T Consensus 143 ~~~~~~e~ne~~w-----~~~nd~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~---f~p~GryfA~GsADAlv 213 (313)
T KOG1407|consen 143 EEQFKFEVNEISW-----NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIE---FDPDGRYFATGSADALV 213 (313)
T ss_pred hhcccceeeeeee-----cCCCCEEEEecCCceEEEEeccccccccccc-cCCcceEEEE---ECCCCceEeecccccee
Confidence 2333456777888 4456676666677999999999999999997 9997777776 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeE
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1339)
.+||+..--|.+. +..|+-+|..+.|+. ++++|++||.|..|-|=++.+|..+..+ .+.++...
T Consensus 214 SLWD~~ELiC~R~------isRldwpVRTlSFS~---dg~~lASaSEDh~IDIA~vetGd~~~eI-------~~~~~t~t 277 (313)
T KOG1407|consen 214 SLWDVDELICERC------ISRLDWPVRTLSFSH---DGRMLASASEDHFIDIAEVETGDRVWEI-------PCEGPTFT 277 (313)
T ss_pred eccChhHhhhhee------eccccCceEEEEecc---CcceeeccCccceEEeEecccCCeEEEe-------eccCCcee
Confidence 9999987766654 577889999999999 8999999999999999999999988874 45667789
Q ss_pred EEeCCCCCEEE
Q 000709 320 HPRAPNLDILT 330 (1339)
Q Consensus 320 vafspdg~iLs 330 (1339)
|+|+|...+|+
T Consensus 278 VAWHPk~~LLA 288 (313)
T KOG1407|consen 278 VAWHPKRPLLA 288 (313)
T ss_pred EEecCCCceee
Confidence 99999998885
No 75
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.2e-19 Score=212.47 Aligned_cols=259 Identities=18% Similarity=0.180 Sum_probs=181.7
Q ss_pred eeeeeCCCCCeEEEEEecCcEE-EEEecCCce-eeccccccCCCCeEEEEEee-ccccCC-----CCEEEEEECCCcEEE
Q 000709 124 ASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKSLVCMEFLS-RSAVGD-----VPLVAFGSSDGVIRV 195 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg~I-~wD~~t~~~-~~v~~~~~h~~~V~~vaf~P-~s~Spd-----g~~LasGs~DgtIrI 195 (1339)
-++.|++..+ +|.+-..|+.+ +||++..+. -.......|...|+.+.-.| +-.++. ..-+++|+.|++||+
T Consensus 328 IA~~Fdet~~-klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 328 IACQFDETTD-KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eEEEecCCCc-eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 3567888777 66666666666 888865432 12334567888999988877 211211 124899999999999
Q ss_pred EECCCC---eEEE-EE--------------------------e------cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 196 LSMISW---KLVR-RY--------------------------T------GGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 196 WDl~t~---~~i~-~l--------------------------~------~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
||+..+ +..+ .+ . -+....+.+++ .+|+|++|++|..-|.+
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~---vSp~gqhLAsGDr~Gnl 483 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALA---VSPDGQHLASGDRGGNL 483 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEE---ECCCcceecccCccCce
Confidence 998742 1100 00 0 01234677887 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeE
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1339)
+|||+..-... ..+..|+..|.|+.|+-..-...+|++++.|+.|+|||... .+....++.+|+..|++
T Consensus 484 rVy~Lq~l~~~------~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r-----ny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 484 RVYDLQELEYT------CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR-----NYDLVQTLDGHSSSITS 552 (1080)
T ss_pred EEEEehhhhhh------hheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc-----ccchhhhhcccccceeE
Confidence 99999876543 23689999999999986322457999999999999999852 23334558999999999
Q ss_pred EEeCCCC---CEEEEecCCe-EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 320 HPRAPNL---DILTCVKDSH-IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 320 vafspdg---~iLs~s~Dg~-LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+.|.-+| ++|+||.|.. +++......... + .+..+-. -.+..++.|+..| ...++++++.|..|
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~---~------f~r~t~t-~~ktTlYDm~Vdp-~~k~v~t~cQDrni- 620 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGR---L------FPRHTQT-LSKTTLYDMAVDP-TSKLVVTVCQDRNI- 620 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCce---e------ccccccc-cccceEEEeeeCC-CcceEEEEecccce-
Confidence 9998776 3889999987 566654211000 0 0000000 1123689999999 57779999999997
Q ss_pred EEecCCCCCCcccc
Q 000709 396 SEFDPRSLPAVAPL 409 (1339)
Q Consensus 396 riWd~~~~p~i~~~ 409 (1339)
|+||+........+
T Consensus 621 rif~i~sgKq~k~F 634 (1080)
T KOG1408|consen 621 RIFDIESGKQVKSF 634 (1080)
T ss_pred EEEeccccceeeee
Confidence 99999987666554
No 76
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.2e-20 Score=198.14 Aligned_cols=245 Identities=14% Similarity=0.187 Sum_probs=197.8
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
+...|+.+.|+-+|+ +.++|+.|+++ .||+..+.+ +.+..+|...|..++. +.|+..+++|+.|..|.+||
T Consensus 16 ~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~l--iktYsghG~EVlD~~~-----s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGAL--IKTYSGHGHEVLDAAL-----SSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred cccceEEEEEccCCC-EEEEcCCCceEEeecccccce--eeeecCCCceeeeccc-----cccccccccCCCCceEEEEE
Confidence 477899999999998 88889999999 568877654 6678999999999998 77899999999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1339)
+.+|+.++++. +|.+.|+.++ |+.+...++||+.|.++++||.++.. +.|...+....+.|.++....
T Consensus 88 V~TGkv~Rr~r-gH~aqVNtV~---fNeesSVv~SgsfD~s~r~wDCRS~s----~ePiQildea~D~V~Si~v~~---- 155 (307)
T KOG0316|consen 88 VNTGKVDRRFR-GHLAQVNTVR---FNEESSVVASGSFDSSVRLWDCRSRS----FEPIQILDEAKDGVSSIDVAE---- 155 (307)
T ss_pred cccCeeeeecc-cccceeeEEE---ecCcceEEEeccccceeEEEEcccCC----CCccchhhhhcCceeEEEecc----
Confidence 99999999998 9999999998 89999999999999999999998765 345666777888999999864
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCeE--EEccCCcccccccCccc
Q 000709 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHI--WAIEHPTYSALTRPLCE 354 (1339)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~L--WDi~t~~~~~~~~~l~~ 354 (1339)
..|++||.||++|.||++.|+.... ....+|+|+.|++++. .|+++.|++| -|-.+++
T Consensus 156 -heIvaGS~DGtvRtydiR~G~l~sD--------y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGk---------- 216 (307)
T KOG0316|consen 156 -HEIVAGSVDGTVRTYDIRKGTLSSD--------YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGK---------- 216 (307)
T ss_pred -cEEEeeccCCcEEEEEeecceeehh--------hcCCcceeEEecCCCCEEEEeeccceeeecccchhH----------
Confidence 7899999999999999999886443 3455889999999998 5588899874 4545442
Q ss_pred cCCCCCCeEEccCCcccE-EEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcccc
Q 000709 355 LSSLVPPQVLAHHKKLRV-YCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1339)
Q Consensus 355 ~~~~~~~~tl~~~~~~~I-~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~ 409 (1339)
.+..+.+|..... ...+++. ....+++|+.||.| .+||+.....+..+
T Consensus 217 -----lL~sYkGhkn~eykldc~l~q-sdthV~sgSEDG~V-y~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 217 -----LLKSYKGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKV-YFWDLVDETQISKL 265 (307)
T ss_pred -----HHHHhcccccceeeeeeeecc-cceeEEeccCCceE-EEEEeccceeeeee
Confidence 2445555654211 2233444 45569999999998 79998765444433
No 77
>PTZ00421 coronin; Provisional
Probab=99.86 E-value=8.3e-20 Score=223.56 Aligned_cols=236 Identities=10% Similarity=0.126 Sum_probs=174.0
Q ss_pred EecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 6 AFRPTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSP-dg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
.|.||++.|++++|+| ++.+|++|+.|++|+|||+.++.......
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~---------------------------------- 115 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS---------------------------------- 115 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC----------------------------------
Confidence 4789999999999999 78899999999999999987532110000
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
.. ...+.+| ...|.+++|+|++..+|++++.|+.+ +||+.+++. +..+..|
T Consensus 116 ---------------------~~----l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~--~~~l~~h 167 (493)
T PTZ00421 116 ---------------------DP----IVHLQGH-TKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA--VEVIKCH 167 (493)
T ss_pred ---------------------cc----eEEecCC-CCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE--EEEEcCC
Confidence 00 0112233 67799999999875599999999988 779988754 3345678
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCee-EEEEeeeCCCCCEEEEEe----CCCc
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSIS-CLMTFMASSGEALLVSGG----SDGL 238 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~-sl~wf~~spdg~~LaSgS----~Dgt 238 (1339)
...|.+++| ++++.+|++|+.|++|+|||+++++.+..+. +|.+.+. .+. +.+++..+++++ .|++
T Consensus 168 ~~~V~sla~-----spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~-~H~~~~~~~~~---w~~~~~~ivt~G~s~s~Dr~ 238 (493)
T PTZ00421 168 SDQITSLEW-----NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE-AHASAKSQRCL---WAKRKDLIITLGCSKSQQRQ 238 (493)
T ss_pred CCceEEEEE-----ECCCCEEEEecCCCEEEEEECCCCcEEEEEe-cCCCCcceEEE---EcCCCCeEEEEecCCCCCCe
Confidence 999999999 6799999999999999999999999888886 8876543 343 455666666654 4799
Q ss_pred EEEEeCCCCCccceeccccccc-ccccceEEEEeeccCCCCCEEEEEe-CCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 239 LILWSADHGQDSRELVPKLSLK-AHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~-gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
|++||+++...... ... .+...+....|++ ++.+|++++ .|+.|++||+.+++.+.... ..+...
T Consensus 239 VklWDlr~~~~p~~-----~~~~d~~~~~~~~~~d~---d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-----~~s~~~ 305 (493)
T PTZ00421 239 IMLWDTRKMASPYS-----TVDLDQSSALFIPFFDE---DTNLLYIGSKGEGNIRCFELMNERLTFCSS-----YSSVEP 305 (493)
T ss_pred EEEEeCCCCCCcee-----EeccCCCCceEEEEEcC---CCCEEEEEEeCCCeEEEEEeeCCceEEEee-----ccCCCC
Confidence 99999987542211 112 2234456667887 788888887 59999999999988765531 223445
Q ss_pred eeEEEeCCC
Q 000709 317 SWCHPRAPN 325 (1339)
Q Consensus 317 V~svafspd 325 (1339)
+..++|.|.
T Consensus 306 ~~g~~~~pk 314 (493)
T PTZ00421 306 HKGLCMMPK 314 (493)
T ss_pred CcceEeccc
Confidence 667777775
No 78
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=2.9e-20 Score=219.02 Aligned_cols=365 Identities=13% Similarity=0.125 Sum_probs=249.3
Q ss_pred eeEEecCCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeecc-cc--CC
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGEL-EH--KG 76 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~---~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~-d~--~g 76 (1339)
++..++||.++|++++|...+. +|+|+++|..||||.+.-+....+..... .. .+-++...+..... .. ..
T Consensus 183 ~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~--~~-t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 183 RVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNERED--SL-TTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred EEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccc--cc-ccccCCceeeeeeeEEEEEeh
Confidence 5789999999999999987654 89999999999999986433211110000 00 00011111111100 00 00
Q ss_pred CccccccCCceEEEEE-----------cCCeEEEEEcCCcccccccccc--ccccCCCCeeeeeeCCCCCeEEEEEecCc
Q 000709 77 KPTEAMRGGSVKQVNF-----------YDDDVRFWQLWRNRAAAAEAPT--AVSNVTSGFASPPPSTKGRHFLVICCVNK 143 (1339)
Q Consensus 77 k~~~~l~~g~V~sVaF-----------~Dg~IrlWDl~~~~~l~~~~~~--~~~~~~~~V~slafspdg~~lLasgs~dg 143 (1339)
..+..-|..+|+++.| .|.++.+|...+...+...... ..++....+++..|+|++..+++-|..++
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 1122234467777777 6889999988776444311111 12233556899999999984444455555
Q ss_pred EEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC----CCeEEEEEecCCCCCeeEE
Q 000709 144 AIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI----SWKLVRRYTGGHKGSISCL 218 (1339)
Q Consensus 144 ~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~----t~~~i~~l~~gH~~~V~sl 218 (1339)
...| +-+.......+...+|.+.|+.++| +|.|.++++.+.|.+-|+|-.- ++..+.+.. -|...++|+
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W-----~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~c~ 413 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDW-----DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLTCL 413 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeee-----cCCCCEEEEeccccceeeecccccccceeeecccc-cccccceee
Confidence 5577 3444445556667899999999999 6789999999999999998643 223344443 699999999
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCC-------------------------------------------CCc----c-
Q 000709 219 MTFMASSGEALLVSGGSDGLLILWSADH-------------------------------------------GQD----S- 250 (1339)
Q Consensus 219 ~wf~~spdg~~LaSgS~DgtVrVWDl~t-------------------------------------------g~~----~- 250 (1339)
+ +-+....|++|.....+|+|+... |.. .
T Consensus 414 ~---~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 414 S---FVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred e---hccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 7 334367899999999999998631 000 0
Q ss_pred ----------------------ceecccccccccccceEEEEeeccCCCCCEEEEEeCCC-----cEEEEECCCCeeEEE
Q 000709 251 ----------------------RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-----TLAIWDTVSFKELRR 303 (1339)
Q Consensus 251 ----------------------~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-----~IrIWDl~t~~~l~~ 303 (1339)
.-|.....+.||...|++++.+| ++++++|++... .|++|+..+....+.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~---~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP---TGNLIASACKSSLKEHAVIRLWNTANWLQVQE 567 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC---CCCEEeehhhhCCccceEEEEEeccchhhhhe
Confidence 00112234678999999999999 899999998643 589999998887665
Q ss_pred ecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecC
Q 000709 304 IKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1339)
Q Consensus 304 ~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~ 380 (1339)
+.+|+-.|+.++|||||++| +.|.|.+ ||....... ........+.|.. .||...|+|
T Consensus 568 ------L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-----------~e~~fa~~k~HtR-IIWdcsW~p- 628 (764)
T KOG1063|consen 568 ------LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-----------DEFRFACLKAHTR-IIWDCSWSP- 628 (764)
T ss_pred ------ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-----------hhhhhccccccce-EEEEcccCc-
Confidence 68999999999999999955 8999997 888754311 0111222456666 899999999
Q ss_pred CCcEEEEEECCCeEEEEecCCC
Q 000709 381 QPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 381 ~~~lLatGs~DG~IlriWd~~~ 402 (1339)
+..+++|++.|..| ++|....
T Consensus 629 de~~FaTaSRDK~V-kVW~~~~ 649 (764)
T KOG1063|consen 629 DEKYFATASRDKKV-KVWEEPD 649 (764)
T ss_pred ccceeEEecCCceE-EEEeccC
Confidence 56779999999998 7997654
No 79
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.86 E-value=2.2e-21 Score=214.09 Aligned_cols=282 Identities=14% Similarity=0.213 Sum_probs=210.9
Q ss_pred eEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg-~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
+..|.||.+.|.|++=||.. ..++||+.||.|+|||+....++.+|+.|.
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~----------------------------- 109 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHE----------------------------- 109 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeeccc-----------------------------
Confidence 45679999999999999987 689999999999999999988888888541
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~ 161 (1339)
|.|++ ++++. . .++++++|.++ +|-+... .+ ...
T Consensus 110 --G~V~G------------------------------------i~v~~--~-~~~tvgdDKtvK~wk~~~~---p~-~ti 144 (433)
T KOG0268|consen 110 --GLVRG------------------------------------ICVTQ--T-SFFTVGDDKTVKQWKIDGP---PL-HTI 144 (433)
T ss_pred --Cceee------------------------------------EEecc--c-ceEEecCCcceeeeeccCC---cc-eee
Confidence 33333 33333 2 56778888888 5633321 11 112
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-CCCEEEEEeCCCcEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-GEALLVSGGSDGLLI 240 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~sp-dg~~LaSgS~DgtVr 240 (1339)
.....+..+.. +..+..++||+.+ |.|||.+...++..+. -....|.++. |+| ...+|++|+.|+.|.
T Consensus 145 lg~s~~~gIdh-----~~~~~~FaTcGe~--i~IWD~~R~~Pv~sms-wG~Dti~svk---fNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 145 LGKSVYLGIDH-----HRKNSVFATCGEQ--IDIWDEQRDNPVSSMS-WGADSISSVK---FNPVETSILASCASDRSIV 213 (433)
T ss_pred ecccccccccc-----ccccccccccCce--eeecccccCCccceee-cCCCceeEEe---cCCCcchheeeeccCCceE
Confidence 22445556665 3456778888754 8999999888888887 5667888897 555 456788888999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEE
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
+||++++..++... ....-+.++|+| ....+++|+.|..++.||++..+. +.....+|.++|.++
T Consensus 214 LyD~R~~~Pl~KVi-------~~mRTN~IswnP---eafnF~~a~ED~nlY~~DmR~l~~-----p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 214 LYDLRQASPLKKVI-------LTMRTNTICWNP---EAFNFVAANEDHNLYTYDMRNLSR-----PLNVHKDHVSAVMDV 278 (433)
T ss_pred EEecccCCccceee-------eeccccceecCc---cccceeeccccccceehhhhhhcc-----cchhhcccceeEEEe
Confidence 99999998776521 122357899999 788999999999999999986442 233468999999999
Q ss_pred EeCCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEE
Q 000709 321 PRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1339)
Q Consensus 321 afspdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Ilri 397 (1339)
.|||.|+ +++||.|.+ ||..+.+.. ...+.......|.|+.||. +..++++|++|+.| |+
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~S---------------RdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nv-Rl 341 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHS---------------RDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNV-RL 341 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcc---------------hhhhhHhhhheeeEEEEec-cccEEEecCCCcce-ee
Confidence 9999998 889999996 787775421 1122222334799999999 57789999999997 99
Q ss_pred ecCCC
Q 000709 398 FDPRS 402 (1339)
Q Consensus 398 Wd~~~ 402 (1339)
|....
T Consensus 342 Wka~A 346 (433)
T KOG0268|consen 342 WKAKA 346 (433)
T ss_pred eecch
Confidence 97654
No 80
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=2.2e-19 Score=220.94 Aligned_cols=242 Identities=10% Similarity=0.104 Sum_probs=175.7
Q ss_pred eEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcE-EEEEeccCccceEEeccccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQV-IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPd-g~~LaSgs~DGtIrIWDl~tg~~-l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+..|.+|.+.|.+++|+|+ +.+|+||+.||+|+|||+.++.. +..+.
T Consensus 67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~------------------------------- 115 (568)
T PTZ00420 67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK------------------------------- 115 (568)
T ss_pred EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc-------------------------------
Confidence 5689999999999999997 78999999999999999875321 11000
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.+ + ....+ |...|.+++|+|++..++++++.|+.+ +||+.+++... ..
T Consensus 116 ---~p----------~---------------~~L~g-H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~--~i 164 (568)
T PTZ00420 116 ---DP----------Q---------------CILKG-HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF--QI 164 (568)
T ss_pred ---cc----------e---------------EEeec-CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE--EE
Confidence 00 0 01122 366799999999998677899999988 67998875422 22
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEE-Ee-eeCCCCCEEEEEeCCC-
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLM-TF-MASSGEALLVSGGSDG- 237 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~-wf-~~spdg~~LaSgS~Dg- 237 (1339)
.|...|.+++| +++|.+|++++.|+.|+|||+++++.+..+. +|.+.+.+.. |+ .+++++.+|++++.|+
T Consensus 165 -~~~~~V~Slsw-----spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 165 -NMPKKLSSLKW-----NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred -ecCCcEEEEEE-----CCCCCEEEEEecCCEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 25678999999 7899999999999999999999999998887 8988765543 22 2468888999988774
Q ss_pred ---cEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccccc
Q 000709 238 ---LLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1339)
Q Consensus 238 ---tVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1339)
+|++||++. +..+.. ..+..+.+.+.. .|.+ +++.++++|+.|++|++|++..+. ++.+.. ..+
T Consensus 238 ~~R~VkLWDlr~~~~pl~~----~~ld~~~~~L~p-~~D~--~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~----~~s 305 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVT----MSIDNASAPLIP-HYDE--STGLIYLIGKGDGNCRYYQHSLGS-IRKVNE----YKS 305 (568)
T ss_pred CccEEEEEECCCCCCceEE----EEecCCccceEE-eeeC--CCCCEEEEEECCCeEEEEEccCCc-EEeecc----ccc
Confidence 799999985 333322 123333333333 3334 368899999999999999998764 333221 225
Q ss_pred CCceeEEEeCCCC
Q 000709 314 SVASWCHPRAPNL 326 (1339)
Q Consensus 314 ~~~V~svafspdg 326 (1339)
...+.+++|.|..
T Consensus 306 ~~p~~g~~f~Pkr 318 (568)
T PTZ00420 306 CSPFRSFGFLPKQ 318 (568)
T ss_pred CCCccceEEcccc
Confidence 5667788998874
No 81
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.86 E-value=1.5e-19 Score=214.32 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=220.5
Q ss_pred cccCCCchhhhhhhcccccCCCCCc-----c---cCCCCccccCCCCCCcccccccccceeeecCCceeeEEeccCCCCC
Q 000709 800 IKLRPPMLQVVRLASFQHAASVPPF-----L---TMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQK 871 (1339)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~ 871 (1339)
+++.+|..-+||-..|.---.+.|- + -++||+++++=|..++|++.+|+++ ++|+.+| +++
T Consensus 680 l~~~VPn~yfvRk~~~d~ed~~ee~~i~~~~~~~pLrdFvgle~Cd~~TRkaml~FSfy----------vtiG~MD-~Af 748 (1416)
T KOG3617|consen 680 LSVSVPNFYFVRKSGWDEEDNREERTIGKTLVAKPLRDFVGLENCDESTRKAMLDFSFY----------VTIGSMD-AAF 748 (1416)
T ss_pred eeeecCceEEEecccccccccccccccchhhhhhhHHHhcCccccCHHHHHhhhceeEE----------EEeccHH-HHH
Confidence 5666666655664444332222220 0 1678999999999999999999999 9999999 799
Q ss_pred CCCcceEEEEE--eCcEEEEEcCCCcEEEEecChhHHHhHHHHhc-----------------------------------
Q 000709 872 RPIGPLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAY----------------------------------- 914 (1339)
Q Consensus 872 ~~~~~~~l~g~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~----------------------------------- 914 (1339)
|+++-|.-=.| ++.++++..++.+|..+||.|.+-.....++|
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99887765455 88899999999999999999987655444433
Q ss_pred -----------CCHHHHHHHHHhcCchh----hHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhc
Q 000709 915 -----------GDSVSAVKWASRLGREH----HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITM 979 (1339)
Q Consensus 915 -----------~~~~~a~~~~~~i~~~~----~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~ 979 (1339)
|.|++|.++++.-++.| |++.|+|||..|-.+-||+..+.+..|+||+-..+-+.--+++ +++
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e--~Yv 906 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE--QYV 906 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH--HHH
Confidence 77777777777766655 6777777777777777777777766777777666543322222 222
Q ss_pred cCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccch
Q 000709 980 SNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHEL 1059 (1339)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~ 1059 (1339)
...+|. .+ -+|| |++..++|+.+-|...|..+ + |+
T Consensus 907 ~~~~d~---------------------------~L----~~WW--gqYlES~GemdaAl~~Y~~A---~---------D~ 941 (1416)
T KOG3617|consen 907 RRKRDE---------------------------SL----YSWW--GQYLESVGEMDAALSFYSSA---K---------DY 941 (1416)
T ss_pred Hhccch---------------------------HH----HHHH--HHHHhcccchHHHHHHHHHh---h---------hh
Confidence 222111 12 3888 99999999999999999999 6 88
Q ss_pred hhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHH----HcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHH
Q 000709 1060 RGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA----ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEA 1135 (1339)
Q Consensus 1060 ~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~----~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~ 1135 (1339)
-+++.+.|..|+.++...+ |.+.|+. .+.|+.+ --||+-++|+.+-++.-+.-|++.+|.++ +++- +
T Consensus 942 fs~VrI~C~qGk~~kAa~i---A~esgd~-AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd---~~d~--L 1012 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARI---AEESGDK-AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND---MKDR--L 1012 (1416)
T ss_pred hhheeeEeeccCchHHHHH---HHhcccH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC---HHHH--H
Confidence 9999999999999998887 9999998 8888863 57899999999999999999999999999 3332 4
Q ss_pred HHHHHhhhcCCCCcchhhHHHHHHh
Q 000709 1136 WNKMLQKEVDHTPTAKTDAAAAFLA 1160 (1339)
Q Consensus 1136 w~~~l~~~~~~~~~~~~~~~~~~~~ 1160 (1339)
|+ ....+.|+.++.+|.||-+
T Consensus 1013 ~n----lal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 1013 AN----LALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred HH----HHhhcCchhHHHHHHHHHH
Confidence 44 4456889999999999954
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=1.8e-20 Score=219.38 Aligned_cols=244 Identities=15% Similarity=0.245 Sum_probs=195.6
Q ss_pred CCCCCEE---EEEEc-CCCCEEEEEeCCCeEEEEECCCCc------EEEEEeccCccceEEe--ccccceeEeeccccCC
Q 000709 9 PTNDKIV---KIQLH-PTHPWLVTADASDHVSVWNWEHRQ------VIYELKAGGVDQRRLV--GAKLEKLAEGELEHKG 76 (1339)
Q Consensus 9 gHs~~V~---~vafS-Pdg~~LaSgs~DGtIrIWDl~tg~------~l~~~~~~~~~~i~~v--s~d~~~Lasgs~d~~g 76 (1339)
.|...|. .+..+ |.++||+|||.||.|++|+...-. .+.+++ +|.+++.-+ +.+++.|++++
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~S----- 92 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISAS----- 92 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEec-----
Confidence 3445555 44444 456789999999999999976322 245555 566666533 36777788776
Q ss_pred CccccccCCceEEEEEcCCeEEEEEcCCcc--ccccccccccccCCCCeeeeee-CCCCCeEEEEEecCcEE-EEEecCC
Q 000709 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNR--AAAAEAPTAVSNVTSGFASPPP-STKGRHFLVICCVNKAI-FLDLVTM 152 (1339)
Q Consensus 77 k~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~--~l~~~~~~~~~~~~~~V~slaf-spdg~~lLasgs~dg~I-~wD~~t~ 152 (1339)
.|-+|++|+..... |+ ...+.|.++|.|+++ -++.. ++++|+-|+.| +||++++
T Consensus 93 ----------------sDtTVK~W~~~~~~~~c~-----stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 93 ----------------SDTTVKVWNAHKDNTFCM-----STIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTG 150 (735)
T ss_pred ----------------CCceEEEeecccCcchhH-----hhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCc
Confidence 68899999998763 33 344555999999999 55554 99999999888 7799876
Q ss_pred cee--------ecccc-ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeee
Q 000709 153 RGR--------DIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMA 223 (1339)
Q Consensus 153 ~~~--------~v~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~ 223 (1339)
... ..... .++...|++++. .+.|..|++|+..+.|++||.++++.+..+. ||+..|.++. .
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~-----N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll---~ 221 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAM-----NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLL---V 221 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeec-----CCcceEEEecCcccceEEeccccccceeeee-ccccceEEEE---E
Confidence 221 11112 267789999999 6788899999999999999999999999998 9999999996 8
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 224 spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
+.+|+.++|+|.||+|++||+...+|+.+ +..|+.+|+++..+| +-..+.+|+.||.|..=|+++.
T Consensus 222 ~dDGt~~ls~sSDgtIrlWdLgqQrCl~T------~~vH~e~VWaL~~~~---sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 222 NDDGTRLLSASSDGTIRLWDLGQQRCLAT------YIVHKEGVWALQSSP---SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred cCCCCeEeecCCCceEEeeeccccceeee------EEeccCceEEEeeCC---CcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999998888765 688999999999998 7889999999999999999884
No 83
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.5e-20 Score=217.07 Aligned_cols=238 Identities=18% Similarity=0.232 Sum_probs=196.4
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc-CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~-h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
...|+++.|+++|. +|++|..+|.+ +||..+.+. +..... |...|.|++| ++..+.+|+.|+.|..+|
T Consensus 217 ~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW-------~~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 217 EELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAW-------NSSVLSSGSRDGKILNHD 286 (484)
T ss_pred CCceEEEEECCCCC-EEEEeecCCeEEEEehhhccc--cccccCCcCceeEEEec-------cCceEEEecCCCcEEEEE
Confidence 45689999999998 99999999999 779877543 445566 8999999999 478899999999999999
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1339)
++..+.......+|...|..+. ++++++++++|+.|+.+.|||..... +...+..|...|..++|+|. .
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLk---ws~d~~~lASGgnDN~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~--q 355 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLK---WSPDGNQLASGGNDNVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPW--Q 355 (484)
T ss_pred EecchhhhhhhhcccceeeeeE---ECCCCCeeccCCCccceEeccCCCcc------ccEEEeccceeeeEeeeCCC--c
Confidence 9987665553348999999998 58999999999999999999995544 34557899999999999996 5
Q ss_pred CCEEEEEe--CCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEE-e-cCC--eEEEccCCccccccc
Q 000709 278 SPQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTC-V-KDS--HIWAIEHPTYSALTR 350 (1339)
Q Consensus 278 g~~LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~-s-~Dg--~LWDi~t~~~~~~~~ 350 (1339)
..+||+|+ .|++|++||..+++.++. ..-...|.++.|++..+ ++++ | .++ +||++.+.
T Consensus 356 ~~lLAsGGGs~D~~i~fwn~~~g~~i~~-------vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------- 421 (484)
T KOG0305|consen 356 SGLLATGGGSADRCIKFWNTNTGARIDS-------VDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------- 421 (484)
T ss_pred cCceEEcCCCcccEEEEEEcCCCcEecc-------cccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-------
Confidence 67899876 699999999999998876 34467899999999975 6654 2 233 48998753
Q ss_pred CccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 351 PLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 351 ~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
.....+.+|.. +|..++++| ++..|++|+.|.++ ++|+.-..
T Consensus 422 --------~~~~~l~gH~~-RVl~la~SP-dg~~i~t~a~DETl-rfw~~f~~ 463 (484)
T KOG0305|consen 422 --------KLVAELLGHTS-RVLYLALSP-DGETIVTGAADETL-RFWNLFDE 463 (484)
T ss_pred --------ceeeeecCCcc-eeEEEEECC-CCCEEEEecccCcE-EeccccCC
Confidence 33567788888 899999999 57779999999996 99987653
No 84
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.85 E-value=7e-21 Score=213.31 Aligned_cols=281 Identities=16% Similarity=0.171 Sum_probs=220.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~--~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
..+..|.+.|..+.|-++...|++|+.|..|++|+...++ .+.++. +....+..+. ++++.+.+.+
T Consensus 169 ~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas--------- 238 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAAS--------- 238 (459)
T ss_pred hhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeec---------
Confidence 4577899999999999999999999999999999987665 444444 3334444444 4444433332
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
+|+.+++|++...+.. .++.+| ...|+++.|..... .+++|+.|.++ .||+....|...
T Consensus 239 ------------~d~~~r~Wnvd~~r~~----~TLsGH-tdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt-- 298 (459)
T KOG0288|consen 239 ------------NDKNLRLWNVDSLRLR----HTLSGH-TDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKT-- 298 (459)
T ss_pred ------------CCCceeeeeccchhhh----hhhccc-ccceeeehhhcccc-ceeeccccchhhhhhhhhhheecc--
Confidence 5899999999998776 566775 89999999988765 59999999999 779987655332
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
......+..|.. ....+++|..|++||+||.++..+..... .| +.|+++. .++++..|.+++.|.++
T Consensus 299 -~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~g-g~vtSl~---ls~~g~~lLsssRDdtl 365 (459)
T KOG0288|consen 299 -VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIRSADKTRSVP-LG-GRVTSLD---LSMDGLELLSSSRDDTL 365 (459)
T ss_pred -ccccccccceEe-------cceeeeecccccceEEEeccCCceeeEee-cC-cceeeEe---eccCCeEEeeecCCCce
Confidence 233445556665 25578899999999999999999988886 44 4999997 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC-cee
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASW 318 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~-~V~ 318 (1339)
.+.|+++....+.+.......+|+ ++.+.|+| ++.|+++||.||.|+||++.++++...+. ..++. .|+
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asD--wtrvvfSp---d~~YvaAGS~dgsv~iW~v~tgKlE~~l~-----~s~s~~aI~ 435 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASD--WTRVVFSP---DGSYVAAGSADGSVYIWSVFTGKLEKVLS-----LSTSNAAIT 435 (459)
T ss_pred eeeecccccEEEEeeccccccccc--cceeEECC---CCceeeeccCCCcEEEEEccCceEEEEec-----cCCCCcceE
Confidence 999999887665554444445555 88999999 89999999999999999999999887752 22333 799
Q ss_pred EEEeCCCCC-EEEEecCCe--EE
Q 000709 319 CHPRAPNLD-ILTCVKDSH--IW 338 (1339)
Q Consensus 319 svafspdg~-iLs~s~Dg~--LW 338 (1339)
+++|+|.|. +++++.++. +|
T Consensus 436 s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 436 SLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEEcCCCchhhcccCCcceEec
Confidence 999999998 557777764 67
No 85
>PTZ00421 coronin; Provisional
Probab=99.85 E-value=3e-19 Score=218.69 Aligned_cols=256 Identities=13% Similarity=0.117 Sum_probs=186.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEE
Q 000709 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 10 Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
|-..|+...+++++..+++++.+.....|+...+..+..+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--------------------------------------- 59 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--------------------------------------- 59 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc---------------------------------------
Confidence 45567777888888878888889988999865433222111
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCC-CCCeEEEEEecCcEE-EEEecCCce-----eecccccc
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRG-----RDIPKQEL 162 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~dg~I-~wD~~t~~~-----~~v~~~~~ 162 (1339)
..++.. ...+...+| ...|.+++|+| +++ +|++|+.|+.| +||+.++.. ..+..+..
T Consensus 60 -------------~~G~~~-~~~~~l~GH-~~~V~~v~fsP~d~~-~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~g 123 (493)
T PTZ00421 60 -------------DYGKLA-SNPPILLGQ-EGPIIDVAFNPFDPQ-KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQG 123 (493)
T ss_pred -------------ccccCC-CCCceEeCC-CCCEEEEEEcCCCCC-EEEEEeCCCEEEEEecCCCccccccCcceEEecC
Confidence 111110 001223444 78899999999 665 89999999999 678865421 12345678
Q ss_pred CCCCeEEEEEeeccccCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 163 DNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spd-g~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
|...|.+++|+ |+ +++|++|+.|++|+|||+++++.+..+. +|...|.+++ +++++.+|++|+.|++|++
T Consensus 124 H~~~V~~l~f~-----P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~-~h~~~V~sla---~spdG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 124 HTKKVGIVSFH-----PSAMNVLASAGADMVVNVWDVERGKAVEVIK-CHSDQITSLE---WNLDGSLLCTTSKDKKLNI 194 (493)
T ss_pred CCCcEEEEEeC-----cCCCCEEEEEeCCCEEEEEECCCCeEEEEEc-CCCCceEEEE---EECCCCEEEEecCCCEEEE
Confidence 99999999994 55 4699999999999999999999888886 8999999998 6889999999999999999
Q ss_pred EeCCCCCccceecccccccccccc-eEEEEeeccCCCCCEEEEEe----CCCcEEEEECCCCe-eEEEecCCCcccccCC
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGG-VVAVELSRVMGGSPQLITIG----ADKTLAIWDTVSFK-ELRRIKPVPKLACHSV 315 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~-V~svafsp~~~dg~~LaSgs----~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~ 315 (1339)
||+++++.+.. +.+|.+. +..+.|++ ++..|++++ .|+.|++||+++.. .+.... ..+..
T Consensus 195 wD~rsg~~v~t------l~~H~~~~~~~~~w~~---~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-----~d~~~ 260 (493)
T PTZ00421 195 IDPRDGTIVSS------VEAHASAKSQRCLWAK---RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD-----LDQSS 260 (493)
T ss_pred EECCCCcEEEE------EecCCCCcceEEEEcC---CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec-----cCCCC
Confidence 99999876543 5678764 45678888 556666654 48999999998754 222210 12234
Q ss_pred ceeEEEeCCCCCEE-EEe-cCCe--EEEccCC
Q 000709 316 ASWCHPRAPNLDIL-TCV-KDSH--IWAIEHP 343 (1339)
Q Consensus 316 ~V~svafspdg~iL-s~s-~Dg~--LWDi~t~ 343 (1339)
.+....|++++.++ ++| .|+. +||+.++
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 55567789998855 555 4885 7999865
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.4e-18 Score=190.72 Aligned_cols=286 Identities=15% Similarity=0.219 Sum_probs=221.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc--CccceEEeccccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG--GVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~--~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
-+.|+.-.+.|+++.|+++|.+|++++.|.+++|||..+|+.++++... +.+.+.+..++...+.+...
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk--------- 77 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK--------- 77 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC---------
Confidence 4567777889999999999999999999999999999999999999754 44555555566655554321
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.|.+||..++.+++.+ +-..|| ...|.+++.+|-++ .+++++.|+++ .||++..++.-+
T Consensus 78 -----------~d~tIryLsl~dNkyl----RYF~GH-~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~--- 137 (311)
T KOG1446|consen 78 -----------EDDTIRYLSLHDNKYL----RYFPGH-KKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGL--- 137 (311)
T ss_pred -----------CCCceEEEEeecCceE----EEcCCC-CceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceE---
Confidence 4789999999999887 456666 88999999999987 88889988888 679997765432
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEe--cCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYT--GGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~--~~i~~l~--~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
.+...-..++| +|+|-++|++.....|++||++.. .+..++. .+.....+.+. |+++|+.++.+...
T Consensus 138 -l~~~~~pi~Af-----Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~---FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 138 -LNLSGRPIAAF-----DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLE---FSPDGKSILLSTNA 208 (311)
T ss_pred -EecCCCcceeE-----CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeE---EcCCCCEEEEEeCC
Confidence 23334445788 789999999988889999999853 2333332 23455677776 89999999999999
Q ss_pred CcEEEEeCCCCCccceeccccccccccc---ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccccc
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDG---GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1339)
Q Consensus 237 gtVrVWDl~tg~~~~~~~~~~~l~gH~~---~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1339)
+.+.+.|.-+|.....+ .++.. --.+..|.| |++++++|+.||+|.+|+++++..+..+.. .+
T Consensus 209 s~~~~lDAf~G~~~~tf------s~~~~~~~~~~~a~ftP---ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~-----~~ 274 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTF------SGYPNAGNLPLSATFTP---DSKFVLSGSDDGTIHVWNLETGKKVAVLRG-----PN 274 (311)
T ss_pred CcEEEEEccCCcEeeeE------eeccCCCCcceeEEECC---CCcEEEEecCCCcEEEEEcCCCcEeeEecC-----CC
Confidence 99999999999865442 33322 125778999 899999999999999999999999888532 16
Q ss_pred CCceeEEEeCCCCCEE-EEecCCeEEEcc
Q 000709 314 SVASWCHPRAPNLDIL-TCVKDSHIWAIE 341 (1339)
Q Consensus 314 ~~~V~svafspdg~iL-s~s~Dg~LWDi~ 341 (1339)
...+.++.|+|.-.++ +++..-.+|-..
T Consensus 275 ~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 275 GGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred CCCccccccCCceeeeeecCceEEEEecc
Confidence 7788899999987655 444444578665
No 87
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=201.91 Aligned_cols=274 Identities=18% Similarity=0.285 Sum_probs=219.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
..|+++...|..+.++||+.|..+.++|..+++.+..++ +|.-.+..+. ++...+.+++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aS------------------ 280 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITAS------------------ 280 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecC------------------
Confidence 568899999888899999999999999999999999998 5555555444 5555555554
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeE
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLV 168 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~ 168 (1339)
.|..|++|......+ +.....|...|+.+..+|.|+ +|+++++|+.+.+ |++++.+..+...+...-.++
T Consensus 281 ---ad~~i~vws~~~~s~-----~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~t 351 (506)
T KOG0289|consen 281 ---ADEIIRVWSVPLSSE-----PTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYT 351 (506)
T ss_pred ---CcceEEeeccccccC-----ccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeeccccceeE
Confidence 478999999877654 345555689999999999998 9999999999977 999987655433333345689
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
+.+| +|||.++.+|..||.|+|||+.+...+..|. +|.++|..++ |+.+|-+|++++.|+.|++||++..+
T Consensus 352 s~~f-----HpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~---FsENGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 352 SAAF-----HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAIS---FSENGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred EeeE-----cCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEE---eccCceEEEEEecCCeEEEEEehhhc
Confidence 9999 5799999999999999999999999888987 8999999998 89999999999999999999999877
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC--CCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~--t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
..+++ .+. ...+|.++.|.+ .|.+|+.++.|=+|++++-. ++.++.. +..|.+..+++.|..+.
T Consensus 423 n~kt~----~l~-~~~~v~s~~fD~---SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~------~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 423 NFKTI----QLD-EKKEVNSLSFDQ---SGTYLGIAGSDLQVYICKKKTKSWTEIKE------LADHSGLSTGVRFGEHA 488 (506)
T ss_pred cccee----ecc-ccccceeEEEcC---CCCeEEeecceeEEEEEecccccceeeeh------hhhcccccceeeecccc
Confidence 55542 222 233799999998 79999999888888877743 3444443 57788788899998887
Q ss_pred CEE-EEecCCe
Q 000709 327 DIL-TCVKDSH 336 (1339)
Q Consensus 327 ~iL-s~s~Dg~ 336 (1339)
+++ ++|.|..
T Consensus 489 q~l~s~smd~~ 499 (506)
T KOG0289|consen 489 QYLASTSMDAI 499 (506)
T ss_pred eEEeeccchhh
Confidence 766 5666653
No 88
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=7.4e-18 Score=202.30 Aligned_cols=442 Identities=16% Similarity=0.209 Sum_probs=297.7
Q ss_pred CCEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCce
Q 000709 12 DKIVKIQLHPT--HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 12 ~~V~~vafSPd--g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
+.|+++ +||. -+-++.|+.+|.++|||+++++.+++++.. .+.|.++. |-...++.|.
T Consensus 160 ~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~-~s~IT~ieqsPaLDVVaiG~---------------- 221 (910)
T KOG1539|consen 160 DFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEF-FSRITAIEQSPALDVVAIGL---------------- 221 (910)
T ss_pred CceeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEeccc-ccceeEeccCCcceEEEEec----------------
Confidence 336665 4664 346888999999999999999999999954 47777776 6666777665
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCC
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKS 166 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~ 166 (1339)
.+|+|.+++++.++.+. ...+..+.|++++|..||+.++++|+..|.+ +||++..+... .....|.+.
T Consensus 222 -----~~G~ViifNlK~dkil~-----sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~-v~~nah~~s 290 (910)
T KOG1539|consen 222 -----ENGTVIIFNLKFDKILM-----SFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLIN-VTRNAHYGS 290 (910)
T ss_pred -----cCceEEEEEcccCcEEE-----EEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeee-eeeccccCC
Confidence 68999999999987752 2233257899999999999999999998855 88998765433 244578889
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~---~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
|....|+ +..+.+++.+.|+.+++|=..++. .+-++..||..+-.|+. ++..+|..+.+++.|++.+.++
T Consensus 291 v~~~~fl-----~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ir--fy~~~g~~ilsa~~Drt~r~fs 363 (910)
T KOG1539|consen 291 VTGATFL-----PGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIR--FYGSQGHFILSAKQDRTLRSFS 363 (910)
T ss_pred cccceec-----CCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchhee--eeccCcEEEEecccCcchhhhh
Confidence 9999995 568899999999999988665432 22334459999999998 3568899999999999999998
Q ss_pred CCCCCccceeccc--------c----cccccccceEEEEeeccC--CCCCEEEEEeCCCcEEEEECCCCee-EEEecCCC
Q 000709 244 ADHGQDSRELVPK--------L----SLKAHDGGVVAVELSRVM--GGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVP 308 (1339)
Q Consensus 244 l~tg~~~~~~~~~--------~----~l~gH~~~V~svafsp~~--~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~ 308 (1339)
+......+++... . ...-.-.+|..+++.... ...+.++..-.+...+.|++++... -+.+.+.
T Consensus 364 ~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~- 442 (910)
T KOG1539|consen 364 VISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPK- 442 (910)
T ss_pred hhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCc-
Confidence 7653322221110 0 011112346666655421 1234666666788999999987654 2333221
Q ss_pred cccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEE---ccCCcccEEEEEEecCCC
Q 000709 309 KLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVL---AHHKKLRVYCMVAHSLQP 382 (1339)
Q Consensus 309 ~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl---~~~~~~~I~~la~sp~~~ 382 (1339)
.+......+++++.++.|.+. .|...|+ ++++.++.. ...+ ..|+. .|.+++... -+
T Consensus 443 ~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~---------------r~sf~~~~ah~~-~V~gla~D~-~n 505 (910)
T KOG1539|consen 443 RFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH---------------RKSFGDSPAHKG-EVTGLAVDG-TN 505 (910)
T ss_pred cccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee---------------ecccccCccccC-ceeEEEecC-CC
Confidence 122344678899999999976 4556665 788887632 1222 23444 899999988 46
Q ss_pred cEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCceEEEEecCeEE---EEEeeeccCCCCCCCCCcccccCCcccCCC
Q 000709 383 HLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELK---LVNFQLSSAANPSLGNNGSLSETGRLKGDL 459 (1339)
Q Consensus 383 ~lLatGs~DG~IlriWd~~~~p~i~~~~~~~~s~~~s~~~~~~~~l~---l~~f~l~~~~n~~lg~~~~~S~~G~~~~~~ 459 (1339)
.++++++.+|.+ +.||..+......+.. +..-...+|-...++- .-+|.. . ..+.
T Consensus 506 ~~~vsa~~~Gil-kfw~f~~k~l~~~l~l--~~~~~~iv~hr~s~l~a~~~ddf~I-------------~------vvD~ 563 (910)
T KOG1539|consen 506 RLLVSAGADGIL-KFWDFKKKVLKKSLRL--GSSITGIVYHRVSDLLAIALDDFSI-------------R------VVDV 563 (910)
T ss_pred ceEEEccCcceE-EEEecCCcceeeeecc--CCCcceeeeeehhhhhhhhcCceeE-------------E------EEEc
Confidence 679999999997 8999887654443321 1111112222222210 000000 0 0000
Q ss_pred chhhHHHhhcccccccCCCCC-ccEEEEcCCCCEEEEEECCCCEEEEEEeCCceeee----cCceeEEEeccCCCeEEEE
Q 000709 460 PDALQIKQIKKHISTPVPHDS-YSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD----SGSARLLAWDTCRDRFAIL 534 (1339)
Q Consensus 460 ~~~l~v~~~~r~i~t~~~~e~-~s~l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i~----~G~~~~~aWs~~~~~fAvl 534 (1339)
.. ....|.+. .|.+ ...+.||||||+| +...-++++.+|++....+++ ...++++.++|.++.+|..
T Consensus 564 ~t----~kvvR~f~---gh~nritd~~FS~DgrWl-isasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 564 VT----RKVVREFW---GHGNRITDMTFSPDGRWL-ISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred hh----hhhhHHhh---ccccceeeeEeCCCCcEE-EEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 00 01122221 1222 3578999999999 666788999999999988887 5569999999999999999
Q ss_pred ecc
Q 000709 535 ESA 537 (1339)
Q Consensus 535 ~~~ 537 (1339)
+..
T Consensus 636 Hvd 638 (910)
T KOG1539|consen 636 HVD 638 (910)
T ss_pred Eec
Confidence 865
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.6e-19 Score=201.46 Aligned_cols=305 Identities=14% Similarity=0.178 Sum_probs=226.9
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
++.+..|.-.|.||+++|++.++++++.+|+|.=|++.+|+....+-... .+ + . .
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~--ev---------~--k-----------~- 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERD--EV---------L--K-----------S- 189 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccc--hh---------h--h-----------h-
Confidence 56788999999999999999999999999999999999887653332110 00 0 0 0
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.+... ......|...+.+++.++||+ +|++|+.|..+ +||..+++. +..+..
T Consensus 190 --------------------~~~~~----k~~r~~h~keil~~avS~Dgk-ylatgg~d~~v~Iw~~~t~eh--v~~~~g 242 (479)
T KOG0299|consen 190 --------------------HGNPL----KESRKGHVKEILTLAVSSDGK-YLATGGRDRHVQIWDCDTLEH--VKVFKG 242 (479)
T ss_pred --------------------ccCCC----CcccccccceeEEEEEcCCCc-EEEecCCCceEEEecCcccch--hhcccc
Confidence 00000 011113367789999999998 99999999988 889888754 556889
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
|.+.|.+++| -.....+++++.|++|++|++.....+.++. ||.+.|..+. ...-++.+..|+.|+++++|
T Consensus 243 hr~~V~~L~f-----r~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~Id---aL~reR~vtVGgrDrT~rlw 313 (479)
T KOG0299|consen 243 HRGAVSSLAF-----RKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGID---ALSRERCVTVGGRDRTVRLW 313 (479)
T ss_pred cccceeeeee-----ecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeec---hhcccceEEeccccceeEEE
Confidence 9999999999 3445679999999999999999998888888 9999999997 45566777778899999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcc------cccCCc
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKL------ACHSVA 316 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l------~~H~~~ 316 (1339)
++..... ..+.+|.+.+.|++|-. ...+++||+||.|.+|++...+++.+....+.+ ..+..+
T Consensus 314 Ki~eesq-------lifrg~~~sidcv~~In----~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~W 382 (479)
T KOG0299|consen 314 KIPEESQ-------LIFRGGEGSIDCVAFIN----DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFW 382 (479)
T ss_pred eccccce-------eeeeCCCCCeeeEEEec----ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccc
Confidence 9965432 34688999999999985 578999999999999999999988876543321 222347
Q ss_pred eeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCe
Q 000709 317 SWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1339)
Q Consensus 317 V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~ 393 (1339)
|++++..|...++ +|+.+|. ||-+..+.. ...++..+... .-|++++|++++..+++..+....
T Consensus 383 itsla~i~~sdL~asGS~~G~vrLW~i~~g~r-----------~i~~l~~ls~~--GfVNsl~f~~sgk~ivagiGkEhR 449 (479)
T KOG0299|consen 383 ITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-----------AINLLYSLSLV--GFVNSLAFSNSGKRIVAGIGKEHR 449 (479)
T ss_pred eeeeEecccCceEEecCCCCceEEEEecCCcc-----------ccceeeecccc--cEEEEEEEccCCCEEEEecccccc
Confidence 8999999998877 6778884 899986521 11122233322 269999999954444444344333
No 90
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=5.8e-18 Score=199.82 Aligned_cols=350 Identities=15% Similarity=0.159 Sum_probs=228.2
Q ss_pred eEEecCCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCcE--EEEEeccCccceEEeccccceeEeeccccCCCc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQV--IYELKAGGVDQRRLVGAKLEKLAEGELEHKGKP 78 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~---~LaSgs~DGtIrIWDl~tg~~--l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~ 78 (1339)
+.++.||..+|+|+.|-|+.. ++++|+.|+.|++|.++.... +.+++. |...+.++.........
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~--------- 116 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTC--------- 116 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEe---------
Confidence 578899999999999999887 899999999999999984433 444443 33333333322111111
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCC-CCCeEEEEEecCcEEEE-EecCCceee
Q 000709 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAIFL-DLVTMRGRD 156 (1339)
Q Consensus 79 ~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~dg~I~w-D~~t~~~~~ 156 (1339)
.-.|+.+.+||.+..+..... ........-.-.|+++.+ ++..+++.|+.+..+.+ .-...++..
T Consensus 117 ------------~~ad~~v~vw~~~~~e~~~~~-~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~ 183 (764)
T KOG1063|consen 117 ------------KAADGTVSVWDKQQDEVFLLA-VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFAR 183 (764)
T ss_pred ------------eccCceEEEeecCCCceeeeh-heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeE
Confidence 115899999999555411000 000111011223566666 45556666677777755 333556677
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe------------------------EEE------E
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK------------------------LVR------R 206 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~------------------------~i~------~ 206 (1339)
+....+|.+.|++++|.-. ..+.-+++++|.|..||||.+.-+. .+. .
T Consensus 184 v~el~GH~DWIrsl~f~~~--~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARL--GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred EEEeeccchhhhhhhhhcc--CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 7778999999999999421 2234589999999999999874211 111 1
Q ss_pred EecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcccee-cccccccccccceEEEEeeccCCCCCEEEEEe
Q 000709 207 YTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIG 285 (1339)
Q Consensus 207 l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~-~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs 285 (1339)
+..||.+.|+++. .+|.+..|+|+|.|.++.+|......-+..- ...-.+.|...+..+.-|+| ++..+++-+
T Consensus 262 ll~GHeDWV~sv~---W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~---n~~~ii~~g 335 (764)
T KOG1063|consen 262 LLMGHEDWVYSVW---WHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP---NSNVIIAHG 335 (764)
T ss_pred hhcCcccceEEEE---EccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC---CCCEEEEec
Confidence 1249999999997 4788889999999999999987765433211 11122344556789999999 789999999
Q ss_pred CCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCe
Q 000709 286 ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQ 362 (1339)
Q Consensus 286 ~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~ 362 (1339)
..|-.++|.......... .....||...|..++|+|.|.++ +.|.|.+ |+---... .. + +.-.+|
T Consensus 336 ~~Gg~hlWkt~d~~~w~~---~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q-----~~-w-HEiaRP-- 403 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQ---EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ-----QE-W-HEIARP-- 403 (764)
T ss_pred ccCcEEEEeccCccceee---ccccccccccceeeeecCCCCEEEEeccccceeeecccccc-----cc-e-eeeccc--
Confidence 999999999443332222 23368999999999999999954 8999985 53221100 00 1 111111
Q ss_pred EEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 363 VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 363 tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
.-|+- .+.|+++-+ +...+++|.++ .|+|+|+..
T Consensus 404 --QiHGy-Dl~c~~~vn-~~~~FVSgAdE-KVlRvF~aP 437 (764)
T KOG1063|consen 404 --QIHGY-DLTCLSFVN-EDLQFVSGADE-KVLRVFEAP 437 (764)
T ss_pred --ccccc-cceeeehcc-CCceeeecccc-eeeeeecCc
Confidence 12443 688999988 34545555555 556999865
No 91
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.7e-19 Score=191.47 Aligned_cols=279 Identities=18% Similarity=0.163 Sum_probs=205.2
Q ss_pred EEEEEcCCC-CEEEEE-------eCCCeEEEEECCCCcEEEEEecc-CccceEEec---cccceeEeeccccCCCccccc
Q 000709 15 VKIQLHPTH-PWLVTA-------DASDHVSVWNWEHRQVIYELKAG-GVDQRRLVG---AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 15 ~~vafSPdg-~~LaSg-------s~DGtIrIWDl~tg~~l~~~~~~-~~~~i~~vs---~d~~~Lasgs~d~~gk~~~~l 82 (1339)
.++.|||-- ++||.+ ...|++.|-++...+-+.++... -.++.+-++ .....+++++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~----------- 80 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAAS----------- 80 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEe-----------
Confidence 478999943 344433 24688999998655555544422 223333333 1111222221
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~ 161 (1339)
.||++++||+..... .+.....| ...|.++.|++..+..+++++.|++| .|+....+ .+.++.
T Consensus 81 ----------GDGSLrl~d~~~~s~---Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~ 144 (311)
T KOG0277|consen 81 ----------GDGSLRLFDLTMPSK---PIHKFKEH-KREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQTFN 144 (311)
T ss_pred ----------cCceEEEeccCCCCc---chhHHHhh-hhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEeec
Confidence 599999999654432 12333444 88899999999887788889999999 55665543 355688
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
+|...|....|+|. .+++++++|.|+++++||++.......+. .|...|.|+.|. .-+.+.|+||+.|+.||+
T Consensus 145 gh~~~Iy~a~~sp~----~~nlfas~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~--ky~~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPH----IPNLFASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWS--KYNHNVLATGGVDNLVRG 217 (311)
T ss_pred CCccEEEEEecCCC----CCCeEEEccCCceEEEEEecCCCceeEEE-eccceeEeeccc--ccCCcEEEecCCCceEEE
Confidence 99999999999773 57899999999999999998643333465 899999999974 456679999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
||+++-+ .|.+++.+|.-.|..+.|+|. ...+|++++.|-++||||........ .+..-|+..|..+.
T Consensus 218 wDir~~r-----~pl~eL~gh~~AVRkvk~Sph--~~~lLaSasYDmT~riw~~~~~ds~~-----e~~~~HtEFv~g~D 285 (311)
T KOG0277|consen 218 WDIRNLR-----TPLFELNGHGLAVRKVKFSPH--HASLLASASYDMTVRIWDPERQDSAI-----ETVDHHTEFVCGLD 285 (311)
T ss_pred Eehhhcc-----ccceeecCCceEEEEEecCcc--hhhHhhhccccceEEecccccchhhh-----hhhhccceEEeccc
Confidence 9999765 367778999999999999995 56799999999999999998544222 22567888899999
Q ss_pred eCCC--CCEEEEecCCe--EEE
Q 000709 322 RAPN--LDILTCVKDSH--IWA 339 (1339)
Q Consensus 322 fspd--g~iLs~s~Dg~--LWD 339 (1339)
|++- +.+.+++.|.. ||+
T Consensus 286 ws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 WSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cccccCceeeecccccceeeec
Confidence 9976 33557899986 676
No 92
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=212.98 Aligned_cols=270 Identities=17% Similarity=0.277 Sum_probs=208.3
Q ss_pred cCCeEEEEEcCCccccc-cccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEE
Q 000709 93 YDDDVRFWQLWRNRAAA-AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCM 170 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~-~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~v 170 (1339)
.||.|++|+........ ........+|..+|+.+....+++ -|++++.|.+| +|+...+...+......|.++|.|+
T Consensus 45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~-tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcl 123 (735)
T KOG0308|consen 45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK-TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCL 123 (735)
T ss_pred CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC-ceEEecCCceEEEeecccCcchhHhhhhcccchheee
Confidence 59999999987643321 111334566799999999999998 78888888888 7787766545677788999999999
Q ss_pred EEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEE--------ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRY--------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 171 af~P~s~Spdg~~LasGs~DgtIrIWDl~t~--~~i~~l--------~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
++. .++..++++|+.|+.|.+||++++ +.+.++ ..|+..+|++++ ..+.|..|++|+..+.++
T Consensus 124 a~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA---~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 124 AYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA---MNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred eec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee---cCCcceEEEecCcccceE
Confidence 994 467889999999999999999976 222222 237889999997 788889999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEE
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
+||.++++.+.. +.||...|..+..++ ||..++++|.||+|++||+.-.+|+.+ +..|...||++
T Consensus 197 ~wDprt~~kimk------LrGHTdNVr~ll~~d---DGt~~ls~sSDgtIrlWdLgqQrCl~T------~~vH~e~VWaL 261 (735)
T KOG0308|consen 197 LWDPRTCKKIMK------LRGHTDNVRVLLVND---DGTRLLSASSDGTIRLWDLGQQRCLAT------YIVHKEGVWAL 261 (735)
T ss_pred Eeccccccceee------eeccccceEEEEEcC---CCCeEeecCCCceEEeeeccccceeee------EEeccCceEEE
Confidence 999999876554 789999999999998 899999999999999999999999988 57899999999
Q ss_pred EeCCCCCEE-EEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 321 PRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 321 afspdg~iL-s~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
..+|+-..+ +|+.|+.|+...-..+. . ...+.... .+|..+..+.++. -+.+++.|+.| +.|.
T Consensus 262 ~~~~sf~~vYsG~rd~~i~~Tdl~n~~-~------------~tlick~d-aPv~~l~~~~~~~-~~WvtTtds~I-~rW~ 325 (735)
T KOG0308|consen 262 QSSPSFTHVYSGGRDGNIYRTDLRNPA-K------------STLICKED-APVLKLHLHEHDN-SVWVTTTDSSI-KRWK 325 (735)
T ss_pred eeCCCcceEEecCCCCcEEecccCCch-h------------heEeecCC-CchhhhhhccccC-Cceeeeccccc-eecC
Confidence 999997754 89999987644422110 0 11111111 1455555554322 35888889997 7886
Q ss_pred CC
Q 000709 400 PR 401 (1339)
Q Consensus 400 ~~ 401 (1339)
..
T Consensus 326 ~~ 327 (735)
T KOG0308|consen 326 LE 327 (735)
T ss_pred Cc
Confidence 54
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.83 E-value=5.8e-20 Score=198.85 Aligned_cols=255 Identities=17% Similarity=0.275 Sum_probs=197.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+++|-.|.+.|+++.|||...+|++|+.|++|+++|+..-...+.++.
T Consensus 165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~-------------------------------- 212 (430)
T KOG0640|consen 165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKV-------------------------------- 212 (430)
T ss_pred EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHH--------------------------------
Confidence 789999999999999999999999999999999999874222221110
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecc-ccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP-KQE 161 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~-~~~ 161 (1339)
+. ....|+++.|+|.|+ +|++|.+..++++ |+++.+|.... -..
T Consensus 213 -------------------------------~q--d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~ 258 (430)
T KOG0640|consen 213 -------------------------------FQ--DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDD 258 (430)
T ss_pred -------------------------------hh--ccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCccc
Confidence 00 034588999999998 8999999999976 99987764222 235
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
.|.+.|+++.+ |+.+++.++||.||.|+|||--+++|+.++...|.+.-.|-+ .|..+++++++.+.|..|++
T Consensus 259 qht~ai~~V~Y-----s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa--~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 259 QHTGAITQVRY-----SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA--VFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred ccccceeEEEe-----cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE--EEccCCeEEeecCCcceeee
Confidence 68899999999 789999999999999999999999999999888887544443 38999999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEe-CCCcEEEEECCCCeeEEEecCCCcccccCCceeEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
|++.+++++.++.--. ..+...--+...|+. ...+++.-. ..+.+.-||.++...+..+ -.+|.+.++.+
T Consensus 332 WEi~t~R~l~~YtGAg-~tgrq~~rtqAvFNh---tEdyVl~pDEas~slcsWdaRtadr~~l~-----slgHn~a~R~i 402 (430)
T KOG0640|consen 332 WEISTGRMLKEYTGAG-TTGRQKHRTQAVFNH---TEDYVLFPDEASNSLCSWDARTADRVALL-----SLGHNGAVRWI 402 (430)
T ss_pred eeecCCceEEEEecCC-cccchhhhhhhhhcC---ccceEEccccccCceeeccccchhhhhhc-----ccCCCCCceEE
Confidence 9999999877642110 011111123345665 455665544 4678999999988765543 46999999999
Q ss_pred EeCCCCC-EEEEecCCe--EEEc
Q 000709 321 PRAPNLD-ILTCVKDSH--IWAI 340 (1339)
Q Consensus 321 afspdg~-iLs~s~Dg~--LWDi 340 (1339)
.-||.+. +++||.|-+ +|--
T Consensus 403 ~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 403 VHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EeCCCCCceeeecccceeeeeee
Confidence 9999987 779998875 7853
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=5.4e-19 Score=202.37 Aligned_cols=253 Identities=16% Similarity=0.221 Sum_probs=194.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.-.+.+++..+.... .........++++.|..||+ ++++|...|.+.+ |..+. ..+..+..|..+|..+.|
T Consensus 47 S~rvqly~~~~~~~~-----k~~srFk~~v~s~~fR~DG~-LlaaGD~sG~V~vfD~k~r--~iLR~~~ah~apv~~~~f 118 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVR-----KTFSRFKDVVYSVDFRSDGR-LLAAGDESGHVKVFDMKSR--VILRQLYAHQAPVHVTKF 118 (487)
T ss_pred ccEEEEEecchhhhh-----hhHHhhccceeEEEeecCCe-EEEccCCcCcEEEeccccH--HHHHHHhhccCceeEEEe
Confidence 446777777665443 12233466799999999998 9999999999955 86553 234456889999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-ccc
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ-DSR 251 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~-~~~ 251 (1339)
+| .++..+++|++|+.+++||+.+......+. +|+++|.|.+| .+.++.+++|||.||+||+||.+... .+.
T Consensus 119 ~~----~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~--~~~~~hivvtGsYDg~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 119 SP----QDNTMLVSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDI--SPANDHIVVTGSYDGKVRLWDTRSLTSRVV 191 (487)
T ss_pred cc----cCCeEEEecCCCceEEEEEcCCcEEEEEec-CCcceeEeecc--ccCCCeEEEecCCCceEEEEEeccCCceeE
Confidence 65 367789999999999999999888655665 99999999984 46667799999999999999999873 222
Q ss_pred eecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEE
Q 000709 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILT 330 (1339)
Q Consensus 252 ~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs 330 (1339)
+ -.|..+|.++.|-| .+.+|++++ ...|++||+-+|..+-. .+..|...|+|+.+..++. +++
T Consensus 192 e-------lnhg~pVe~vl~lp---sgs~iasAg-Gn~vkVWDl~~G~qll~-----~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 192 E-------LNHGCPVESVLALP---SGSLIASAG-GNSVKVWDLTTGGQLLT-----SMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred E-------ecCCCceeeEEEcC---CCCEEEEcC-CCeEEEEEecCCceehh-----hhhcccceEEEEEeecCCceEee
Confidence 2 45899999999999 778888887 46899999996654332 1345999999999998876 779
Q ss_pred EecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 331 CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 331 ~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+|-|++ +||+.+-.. ...+... .+|.+++.+| ++..++.|..+|.+.
T Consensus 256 ~sLD~~VKVfd~t~~Kv---------------v~s~~~~--~pvLsiavs~-dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKV---------------VHSWKYP--GPVLSIAVSP-DDQTVVIGMSNGLVS 304 (487)
T ss_pred cccccceEEEEccceEE---------------EEeeecc--cceeeEEecC-CCceEEEecccceee
Confidence 999996 788654211 1222222 3799999999 456699999999974
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.6e-19 Score=190.73 Aligned_cols=263 Identities=19% Similarity=0.200 Sum_probs=194.5
Q ss_pred CeeeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE---EEEEeccCccceEEeccccceeEeeccccCCC
Q 000709 1 MLRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQV---IYELKAGGVDQRRLVGAKLEKLAEGELEHKGK 77 (1339)
Q Consensus 1 mL~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~---l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk 77 (1339)
|+..+.-.+|.+-|..+...-.|++|||++.|++|+|+..+++.. +.++.
T Consensus 1 ~~~q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~--------------------------- 53 (299)
T KOG1332|consen 1 TVMQTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELT--------------------------- 53 (299)
T ss_pred CcceehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEec---------------------------
Confidence 344455678999999999988999999999999999999875432 22222
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeC-C-CCCeEEEEEecCcEE-EEEecCCce
Q 000709 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-T-KGRHFLVICCVNKAI-FLDLVTMRG 154 (1339)
Q Consensus 78 ~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafs-p-dg~~lLasgs~dg~I-~wD~~t~~~ 154 (1339)
+| .++|+.++|. | .|. +|++|+.|+.+ +|....++.
T Consensus 54 ---------------------------------------Gh-~GPVwqv~wahPk~G~-iLAScsYDgkVIiWke~~g~w 92 (299)
T KOG1332|consen 54 ---------------------------------------GH-SGPVWKVAWAHPKFGT-ILASCSYDGKVIIWKEENGRW 92 (299)
T ss_pred ---------------------------------------CC-CCCeeEEeecccccCc-EeeEeecCceEEEEecCCCch
Confidence 22 3344444443 3 454 99999999877 667777766
Q ss_pred eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCC-----
Q 000709 155 RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE----- 227 (1339)
Q Consensus 155 ~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~--~~i~~l~~gH~~~V~sl~wf~~spdg----- 227 (1339)
........|...|++|+|-| +..|-.|++++.||.|.|.+.++. -...++...|.-.|++++|..-+..|
T Consensus 93 ~k~~e~~~h~~SVNsV~wap---heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~ 169 (299)
T KOG1332|consen 93 TKAYEHAAHSASVNSVAWAP---HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQ 169 (299)
T ss_pred hhhhhhhhhcccceeecccc---cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccccc
Confidence 66666778999999999977 556889999999999999998753 23334445899999999986333233
Q ss_pred ------CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC-CCCEEEEEeCCCcEEEEECCCCee
Q 000709 228 ------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFKE 300 (1339)
Q Consensus 228 ------~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~-dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1339)
+.|+||+.|..|+||+..++. +....+|.+|.+.|..++|.|..+ ...+|+++|.||+|.||..+....
T Consensus 170 ~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 170 GPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred CcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 679999999999999999874 333455899999999999999421 246899999999999998763211
Q ss_pred EEEecCCCcccccCCceeEEEeCCCCCEEEE-ecCCe--EEEcc
Q 000709 301 LRRIKPVPKLACHSVASWCHPRAPNLDILTC-VKDSH--IWAIE 341 (1339)
Q Consensus 301 l~~~~~~~~l~~H~~~V~svafspdg~iLs~-s~Dg~--LWDi~ 341 (1339)
.... .-+......++.+.||..|.+|+. +.|+. +|.-+
T Consensus 246 ~wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccc---cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1111 113445667999999999998864 44553 78644
No 96
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.82 E-value=4e-17 Score=187.22 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=143.7
Q ss_pred EEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000709 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1339)
Q Consensus 135 lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~ 214 (1339)
.++.++.||.+.+=-+.++. -.....|.+.+.|-.| ++||.-|++.+.||.|++|.- +|-...++. ....+
T Consensus 77 ~~~i~s~DGkf~il~k~~rV--E~sv~AH~~A~~~gRW-----~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~-Q~~~~ 147 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSARV--ERSISAHAAAISSGRW-----SPDGAGLLTAGEDGVIKIWSR-SGMLRSTVV-QNEES 147 (737)
T ss_pred eEEEEcCCceEEEecccchh--hhhhhhhhhhhhhccc-----CCCCceeeeecCCceEEEEec-cchHHHHHh-hcCce
Confidence 55666666666442233332 2345789999999999 889999999999999999984 343322332 46679
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEE
Q 000709 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWD 294 (1339)
Q Consensus 215 V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWD 294 (1339)
|.|++| .|+.+.++-|.. +.+.+=.+.....+ ..++.|++-|.++.|++ ..++|++||.|-..+|||
T Consensus 148 v~c~~W---~p~S~~vl~c~g-~h~~IKpL~~n~k~------i~WkAHDGiiL~~~W~~---~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 148 IRCARW---APNSNSIVFCQG-GHISIKPLAANSKI------IRWRAHDGLVLSLSWST---QSNIIASGGEDFRFKIWD 214 (737)
T ss_pred eEEEEE---CCCCCceEEecC-CeEEEeecccccce------eEEeccCcEEEEeecCc---cccceeecCCceeEEeec
Confidence 999996 455544444332 34444444433322 23689999999999999 688999999999999999
Q ss_pred CCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEE
Q 000709 295 TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC 374 (1339)
Q Consensus 295 l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ 374 (1339)
-.. ..+.. -..|.-+|++++|.|+..++. |..++. .+...+...|..
T Consensus 215 ~~G-~~Lf~------S~~~ey~ITSva~npd~~~~v-------~S~nt~-------------------R~~~p~~GSifn 261 (737)
T KOG1524|consen 215 AQG-ANLFT------SAAEEYAITSVAFNPEKDYLL-------WSYNTA-------------------RFSSPRVGSIFN 261 (737)
T ss_pred ccC-ccccc------CChhccceeeeeeccccceee-------eeeeee-------------------eecCCCccceEE
Confidence 763 43333 467888999999999954553 444432 122222337999
Q ss_pred EEEecCCCcEEEEEECCCeEE
Q 000709 375 MVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 375 la~sp~~~~lLatGs~DG~Il 395 (1339)
++||+ ++..+++|+..|.++
T Consensus 262 lsWS~-DGTQ~a~gt~~G~v~ 281 (737)
T KOG1524|consen 262 LSWSA-DGTQATCGTSTGQLI 281 (737)
T ss_pred EEEcC-CCceeeccccCceEE
Confidence 99999 688899999999975
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=3.2e-19 Score=202.70 Aligned_cols=255 Identities=16% Similarity=0.239 Sum_probs=198.3
Q ss_pred cccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee--ecc-------------cc-ccCCCCeEEEEEeecccc
Q 000709 116 VSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR--DIP-------------KQ-ELDNKSLVCMEFLSRSAV 178 (1339)
Q Consensus 116 ~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~--~v~-------------~~-~~h~~~V~~vaf~P~s~S 178 (1339)
.+.|...+.+++++|+++ +..+++.+++| .|+..+++.. .+. .. ..|...+.|++. |
T Consensus 138 ~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av-----S 211 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV-----S 211 (479)
T ss_pred eccccCcceEEEeecccc-ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-----c
Confidence 444577899999999998 88888888888 7887776532 011 11 367788999999 8
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccc
Q 000709 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1339)
Q Consensus 179 pdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~ 258 (1339)
+||+||++|+.|..|.|||.++.+.++.+. +|.+.|.+++ |-.....+.+++.|++|++|++.....+.+
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~---fr~gt~~lys~s~Drsvkvw~~~~~s~vet------ 281 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLA---FRKGTSELYSASADRSVKVWSIDQLSYVET------ 281 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeee---eecCccceeeeecCCceEEEehhHhHHHHH------
Confidence 999999999999999999999999999987 9999999998 667778899999999999999987665443
Q ss_pred ccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--
Q 000709 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-- 336 (1339)
Q Consensus 259 l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~-- 336 (1339)
+.||.+.|.++.... .++.+-+|+.|+++++|++.....+. +.+|.+.+-|++|-.+..+++||.||.
T Consensus 282 lyGHqd~v~~IdaL~---reR~vtVGgrDrT~rlwKi~eesqli-------frg~~~sidcv~~In~~HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALS---RERCVTVGGRDRTVRLWKIPEESQLI-------FRGGEGSIDCVAFINDEHFVSGSDNGSIA 351 (479)
T ss_pred HhCCccceeeechhc---ccceEEeccccceeEEEeccccceee-------eeCCCCCeeeEEEecccceeeccCCceEE
Confidence 789999999998876 46666677799999999996543322 478888999999999999999999997
Q ss_pred EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 337 LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
||++.+....-.....+...... ... +....|++++..| +..++|+|+.+|.| |+|-+..
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~--~~~--~~~~Witsla~i~-~sdL~asGS~~G~v-rLW~i~~ 411 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPEL--DPV--NGNFWITSLAVIP-GSDLLASGSWSGCV-RLWKIED 411 (479)
T ss_pred EeeecccCceeEeeccccccCCc--ccc--ccccceeeeEecc-cCceEEecCCCCce-EEEEecC
Confidence 79987542211111111111100 001 1124899999999 89999999999997 9997653
No 98
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.82 E-value=3.4e-19 Score=202.99 Aligned_cols=262 Identities=17% Similarity=0.223 Sum_probs=195.5
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCc--------eeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR--------GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS 189 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~--------~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~ 189 (1339)
|.+.|+.+.+-|+.+.++++.+.++-+ +||+.... ++.-..+.+|.+.-+.+.|.+. ..-.+++|+.
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~----~~g~Lls~~~ 198 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQ----QEGTLLSGSD 198 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccc----cceeEeeccC
Confidence 477889999999998888888888877 66875322 1111245778777778999542 3457999999
Q ss_pred CCcEEEEECCCCeE------EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccc
Q 000709 190 DGVIRVLSMISWKL------VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1339)
Q Consensus 190 DgtIrIWDl~t~~~------i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1339)
|++|++||+..... .+....+|...|..++|. ..+..+|++++.|+.+.|||++++. . .+.....+|.
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h--~~h~~lF~sv~dd~~L~iwD~R~~~-~---~~~~~~~ah~ 272 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWH--PLHEDLFGSVGDDGKLMIWDTRSNT-S---KPSHSVKAHS 272 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhcc--ccchhhheeecCCCeEEEEEcCCCC-C---CCcccccccC
Confidence 99999999974322 123334999999999864 4456799999999999999999741 1 2344578999
Q ss_pred cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EE-EEecCCe--EEE
Q 000709 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH--IWA 339 (1339)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iL-s~s~Dg~--LWD 339 (1339)
+.|+|++|+|. ++.+|||||.|++|++||+++... +...+.+|...|.+|.|+|+.. +| ++|.|++ |||
T Consensus 273 ~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlRnL~~-----~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 273 AEVNCVAFNPF--NEFILATGSADKTVALWDLRNLNK-----PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred CceeEEEeCCC--CCceEEeccCCCcEEEeechhccc-----CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 99999999996 788999999999999999997553 3345799999999999999976 44 6778987 899
Q ss_pred ccCCcccccccCccccCCCCCC--eEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 340 IEHPTYSALTRPLCELSSLVPP--QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 340 i~t~~~~~~~~~l~~~~~~~~~--~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
+..-.... . -.+.....+. ..-.+|.. .|..+.|+|..+..|++.++|+.+ .||.+..
T Consensus 346 ls~ig~eq-~--~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~L-qIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQ-S--PEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNIL-QIWQMAE 405 (422)
T ss_pred cccccccc-C--hhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceE-EEeeccc
Confidence 98431100 0 1111122222 33345555 899999999999999999999885 9998663
No 99
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.82 E-value=9.6e-19 Score=186.95 Aligned_cols=263 Identities=14% Similarity=0.163 Sum_probs=195.7
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
||-++.||++.|+|++.+-+.++|+||+.|.++++||+++|+++.+++.+..-...-...++.+++.......+
T Consensus 44 rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg------ 117 (327)
T KOG0643|consen 44 RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG------ 117 (327)
T ss_pred eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC------
Confidence 68899999999999999999999999999999999999999999999865433333333555555544333222
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccc-ccc-ccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAA-AEA-PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~-~~~-~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
+.+.|.++|+.....-. ... ....-.+.+.++.+-|.|-++ +|++|.+++.| +||.+++.. .+..
T Consensus 118 ----------~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~-~v~s 185 (327)
T KOG0643|consen 118 ----------YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKE-LVDS 185 (327)
T ss_pred ----------cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCce-eeec
Confidence 35677888887433111 111 111222367899999999998 99999999999 789998753 4455
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL- 238 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt- 238 (1339)
...|...|+.+.+ ++|..+++++|.|.+-++||+.+-++++++. ...+|++.+ ++|..+.++.|+.-..
T Consensus 186 ~~~h~~~Ind~q~-----s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aa---isP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 186 DEEHSSKINDLQF-----SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAA---ISPLLDHVILGGGQEAM 255 (327)
T ss_pred hhhhccccccccc-----cCCcceEEecccCccceeeeccceeeEEEee--eccccccee---cccccceEEecCCceee
Confidence 6788999999999 8899999999999999999999999999985 678999997 6776666665543221
Q ss_pred -EEEEeCCCCCcccee------cccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 239 -LILWSADHGQDSREL------VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 239 -VrVWDl~tg~~~~~~------~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
|.-=+.+.|+....| .....+++|-++|++++||| +|...+||+.||.||+....
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP---dGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP---DGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC---CCcccccCCCCceEEEEEec
Confidence 222222233211111 11234689999999999999 89999999999999997654
No 100
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=9.9e-19 Score=207.60 Aligned_cols=238 Identities=17% Similarity=0.282 Sum_probs=192.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
.+.|+++.|+++|.+|+.|..+|.|.|||..+.+.+.++..+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~-------------------------------------- 258 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS-------------------------------------- 258 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC--------------------------------------
Confidence 788999999999999999999999999998876655555422
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEE
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
|...|-+++|. + ..+.+|+.++.|.. |++..+... .....|...|+.
T Consensus 259 ----------------------------h~~rvg~laW~--~-~~lssGsr~~~I~~~dvR~~~~~~-~~~~~H~qeVCg 306 (484)
T KOG0305|consen 259 ----------------------------HASRVGSLAWN--S-SVLSSGSRDGKILNHDVRISQHVV-STLQGHRQEVCG 306 (484)
T ss_pred ----------------------------cCceeEEEecc--C-ceEEEecCCCcEEEEEEecchhhh-hhhhcccceeee
Confidence 25557778887 3 37889999998844 888765422 247889999999
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe--CCCcEEEEeCCCC
Q 000709 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG--SDGLLILWSADHG 247 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS--~DgtVrVWDl~tg 247 (1339)
+.| ++|+.++++|+.|+.+.|||.........+. .|...|..++|+ +-...+||+|+ .|++|++||..++
T Consensus 307 Lkw-----s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awc--P~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 307 LKW-----SPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWC--PWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred eEE-----CCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeC--CCccCceEEcCCCcccEEEEEEcCCC
Confidence 999 8999999999999999999998888888887 999999999975 44556888864 6999999999999
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEE-Ee-CCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT-IG-ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS-gs-~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
..+.. ......|.+|.|++ ..+-|++ -+ .++.|.||++.+.+.+.. +.+|...|..++++||
T Consensus 379 ~~i~~-------vdtgsQVcsL~Wsk---~~kEi~sthG~s~n~i~lw~~ps~~~~~~------l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 379 ARIDS-------VDTGSQVCSLIWSK---KYKELLSTHGYSENQITLWKYPSMKLVAE------LLGHTSRVLYLALSPD 442 (484)
T ss_pred cEecc-------cccCCceeeEEEcC---CCCEEEEecCCCCCcEEEEeccccceeee------ecCCcceeEEEEECCC
Confidence 87764 23456799999999 4444444 33 578999999998766655 7899999999999999
Q ss_pred CC-EEEEecCCe--EEEccC
Q 000709 326 LD-ILTCVKDSH--IWAIEH 342 (1339)
Q Consensus 326 g~-iLs~s~Dg~--LWDi~t 342 (1339)
|. +++++.|.+ +|++-.
T Consensus 443 g~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 443 GETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCEEEEecccCcEEeccccC
Confidence 98 457888886 788764
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.82 E-value=1.5e-18 Score=214.79 Aligned_cols=253 Identities=19% Similarity=0.231 Sum_probs=193.9
Q ss_pred ccccccCCCCeeeeeeCCCCCeEEEEEe--cCcEE-EEEecCC----c------eeeccccccCCCCeEEEEEeeccccC
Q 000709 113 PTAVSNVTSGFASPPPSTKGRHFLVICC--VNKAI-FLDLVTM----R------GRDIPKQELDNKSLVCMEFLSRSAVG 179 (1339)
Q Consensus 113 ~~~~~~~~~~V~slafspdg~~lLasgs--~dg~I-~wD~~t~----~------~~~v~~~~~h~~~V~~vaf~P~s~Sp 179 (1339)
+...+|....|.++..+|++. .+++|+ .|+.+ +|+...- + .+.+.....|.+.|.|+.| ++
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~-----S~ 79 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRF-----SP 79 (942)
T ss_pred ccccccCCeeEEEEEecCCce-eEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEE-----CC
Confidence 455677778899999999997 888887 55444 6643211 0 1123445678999999999 89
Q ss_pred CCCEEEEEECCCcEEEEECCC------------------CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 180 DVPLVAFGSSDGVIRVLSMIS------------------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t------------------~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
||.+||+||+|+.|.||+... ++++..+. +|...|..++ ++|++.+|++++.|++|.+
T Consensus 80 dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~-~H~~DV~Dv~---Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 80 DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILR-GHDSDVLDVN---WSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEe-cCCCccceec---cCCCccEEEEecccceEEE
Confidence 999999999999999999762 35677777 9999999998 4889999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
||..+.+++.. +.+|.+.|-.+.|.| -|+||++-++|++|+||++.++...+++.....-..-......+.
T Consensus 156 wn~~tF~~~~v------l~~H~s~VKGvs~DP---~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTFELLKV------LRGHQSLVKGVSWDP---IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccceeeee------eecccccccceEECC---ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 99998866554 799999999999999 799999999999999999988887777643332233344577899
Q ss_pred eCCCCCEEEE--ecCC-e----EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecC------C------C
Q 000709 322 RAPNLDILTC--VKDS-H----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL------Q------P 382 (1339)
Q Consensus 322 fspdg~iLs~--s~Dg-~----LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~------~------~ 382 (1339)
|||||++|+. +..+ . |.+-. ....-..|-+|.. ++.++.|+|. + +
T Consensus 227 WSPDG~~las~nA~n~~~~~~~IieR~---------------tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 227 WSPDGHHLASPNAVNGGKSTIAIIERG---------------TWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred cCCCcCeecchhhccCCcceeEEEecC---------------CceeeeeeecCCC-ceEEEEeChHHhccccccCCccCC
Confidence 9999998854 2222 1 22111 1122345678888 9999999983 1 1
Q ss_pred ----cEEEEEECCCeEEEEecCC
Q 000709 383 ----HLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 383 ----~lLatGs~DG~IlriWd~~ 401 (1339)
..+|+|+.|+.| .+|...
T Consensus 291 ~~~y~i~AvgSqDrSl-SVW~T~ 312 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSL-SVWNTA 312 (942)
T ss_pred CcceEEEEEecCCccE-EEEecC
Confidence 168899999997 799754
No 102
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=1.2e-19 Score=191.85 Aligned_cols=248 Identities=17% Similarity=0.226 Sum_probs=203.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+.+|+||.+.|++..++.+-..-|+++.|-+-+|||.-+|..+.+|+..|.-.....+.|..+|.+|+
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg------------ 119 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG------------ 119 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc------------
Confidence 67999999999999999998899999999999999999999999998666444444457777777775
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.+..+|++|++..+-- +.....|.+.|+.+.|....+ .+++.++|+.| .||.+++.... ...
T Consensus 120 ---------~ekllrvfdln~p~Ap----p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt~v~---sL~ 182 (334)
T KOG0278|consen 120 ---------QEKLLRVFDLNRPKAP----PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGTEVQ---SLE 182 (334)
T ss_pred ---------hHHHhhhhhccCCCCC----chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCcEEE---EEe
Confidence 4678899998876543 344445588999999998887 66777999999 56999986432 233
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
-+..|+++.+ +++|++|.++ ..+.|.+||..+...++.+. -.-.|.+.. .+|+...++.|+.|..++.|
T Consensus 183 ~~s~VtSlEv-----s~dG~ilTia-~gssV~Fwdaksf~~lKs~k--~P~nV~SAS---L~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 183 FNSPVTSLEV-----SQDGRILTIA-YGSSVKFWDAKSFGLLKSYK--MPCNVESAS---LHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred cCCCCcceee-----ccCCCEEEEe-cCceeEEeccccccceeecc--Ccccccccc---ccCCCceEEecCcceEEEEE
Confidence 4678999999 6788876655 67789999999998888774 445667665 78888999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
|..++..+..+ .++|-++|.|+.|+| +|...++||.||+|+||....++
T Consensus 252 Dy~TgeEi~~~-----nkgh~gpVhcVrFSP---dGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 252 DYNTGEEIGSY-----NKGHFGPVHCVRFSP---DGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred eccCCceeeec-----ccCCCCceEEEEECC---CCceeeccCCCceEEEEEecCCC
Confidence 99999876541 489999999999999 89999999999999999987655
No 103
>PTZ00420 coronin; Provisional
Probab=99.81 E-value=1.1e-17 Score=206.07 Aligned_cols=222 Identities=12% Similarity=0.069 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce------eeccccccCCCC
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG------RDIPKQELDNKS 166 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~------~~v~~~~~h~~~ 166 (1339)
++.+++|+......+ ....+| ...|.+++|+|+...+|++|+.|+.| +||+.++.. ..+.....|...
T Consensus 53 ~gvI~L~~~~r~~~v----~~L~gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 53 IGAIRLENQMRKPPV----IKLKGH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred eeEEEeeecCCCceE----EEEcCC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 677888887665432 334444 88999999999744499999999999 678865421 112235678999
Q ss_pred eEEEEEeeccccCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000709 167 LVCMEFLSRSAVGDVPL-VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~-LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~ 245 (1339)
|.+++| +|++.. +++++.|++|+|||+++++.+..+. |...|.+++ ++++|.+|++++.|++|++||++
T Consensus 128 V~sVaf-----~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~Sls---wspdG~lLat~s~D~~IrIwD~R 197 (568)
T PTZ00420 128 ISIIDW-----NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLK---WNIKGNLLSGTCVGKHMHIIDPR 197 (568)
T ss_pred EEEEEE-----CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEE---ECCCCCEEEEEecCCEEEEEECC
Confidence 999999 566765 5789999999999999998777764 667899998 68999999999999999999999
Q ss_pred CCCccceecccccccccccceEEEE-----eeccCCCCCEEEEEeCCC----cEEEEECCC-CeeEEEecCCCcccccCC
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVE-----LSRVMGGSPQLITIGADK----TLAIWDTVS-FKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~sva-----fsp~~~dg~~LaSgs~Dg----~IrIWDl~t-~~~l~~~~~~~~l~~H~~ 315 (1339)
++..+.. +.+|.+.+.+.. |++ ++.+|++++.|+ +|+|||+++ .+++..+ .+..+..
T Consensus 198 sg~~i~t------l~gH~g~~~s~~v~~~~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~----~ld~~~~ 264 (568)
T PTZ00420 198 KQEIASS------FHIHDGGKNTKNIWIDGLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTM----SIDNASA 264 (568)
T ss_pred CCcEEEE------EecccCCceeEEEEeeeEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEE----EecCCcc
Confidence 9876544 678887654333 445 678888888764 799999995 4555542 1233334
Q ss_pred ceeEEEeCCCCCEE-EEecCCe--EEEccCC
Q 000709 316 ASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1339)
Q Consensus 316 ~V~svafspdg~iL-s~s~Dg~--LWDi~t~ 343 (1339)
.+......+++.++ +|+.|+. +|++..+
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence 44334445557744 7778885 8998754
No 104
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5.1e-17 Score=201.94 Aligned_cols=212 Identities=18% Similarity=0.267 Sum_probs=155.8
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC------eEEEEEecCCCCCeeEEEEeeeCCC-CCEEEEEeCC
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW------KLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSD 236 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~------~~i~~l~~gH~~~V~sl~wf~~spd-g~~LaSgS~D 236 (1339)
....++++|.+....+. -+|+.|..||.|.+||...- ..+.+.. .|++.|..+. |++. +++|++|+.|
T Consensus 64 ~~rF~kL~W~~~g~~~~-GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLD---fN~~q~nlLASGa~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSH-GLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLD---FNPFQGNLLASGADD 138 (1049)
T ss_pred cccceeeeecccCCCcc-ceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeee---ccccCCceeeccCCC
Confidence 45778899944211111 25888999999999998642 2334444 7999999998 5655 5599999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC-
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV- 315 (1339)
Q Consensus 237 gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~- 315 (1339)
|.|.|||+..-+.-..+ . -......|.+++|+. ...+.|++++.+|++.|||++..+.+-. +..|..
T Consensus 139 geI~iWDlnn~~tP~~~--~--~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~pii~------ls~~~~~ 206 (1049)
T KOG0307|consen 139 GEILIWDLNKPETPFTP--G--SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKPIIK------LSDTPGR 206 (1049)
T ss_pred CcEEEeccCCcCCCCCC--C--CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCcccc------cccCCCc
Confidence 99999999874422211 0 122456799999998 3678999999999999999998776554 333333
Q ss_pred -ceeEEEeCCCCC--EEEEecCCe-----EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 316 -ASWCHPRAPNLD--ILTCVKDSH-----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 316 -~V~svafspdg~--iLs~s~Dg~-----LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
.+..+.|||+.. +++++.|.+ +||++... .+...+..|.+ .|.++.|++.+..++++
T Consensus 207 ~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--------------sP~k~~~~H~~-GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 207 MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--------------SPLKILEGHQR-GILSLSWCPQDPRLLLS 271 (1049)
T ss_pred cceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--------------Cchhhhccccc-ceeeeccCCCCchhhhc
Confidence 467899999965 666666653 79998542 45667777877 89999999998899999
Q ss_pred EECCCeEEEEecCCCCCCccc
Q 000709 388 GTNVGVIISEFDPRSLPAVAP 408 (1339)
Q Consensus 388 Gs~DG~IlriWd~~~~p~i~~ 408 (1339)
++.|+.| .+|+..+...+..
T Consensus 272 sgkD~~i-i~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 272 SGKDNRI-ICWNPNTGEVLGE 291 (1049)
T ss_pred ccCCCCe-eEecCCCceEeee
Confidence 9999998 4998876444433
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2e-18 Score=196.05 Aligned_cols=289 Identities=19% Similarity=0.264 Sum_probs=213.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--cEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR--QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg--~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
.+.|++|.|||..++|++|+.||+++||-+... ..+.++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~-------------------------------------- 254 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-------------------------------------- 254 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeee--------------------------------------
Confidence 368999999999999999999999999987621 1111111
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCC-CC
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KS 166 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~-~~ 166 (1339)
| ...+|.+.+|.|+|+..+++++....+ .||+.+.+...+....++. ..
T Consensus 255 ---l--------------------------~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~ 305 (514)
T KOG2055|consen 255 ---L--------------------------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKS 305 (514)
T ss_pred ---e--------------------------ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccch
Confidence 1 044678888999998566666665555 7899988876665555543 45
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
+..... |+++++|+..+..|.|.|....+++.+..+. -.+.|..++ |+.+++.|++++.+|.|.+||++.
T Consensus 306 ~e~FeV-----Shd~~fia~~G~~G~I~lLhakT~eli~s~K--ieG~v~~~~---fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 306 MERFEV-----SHDSNFIAIAGNNGHIHLLHAKTKELITSFK--IEGVVSDFT---FSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred hheeEe-----cCCCCeEEEcccCceEEeehhhhhhhhheee--eccEEeeEE---EecCCcEEEEEcCCceEEEEecCC
Confidence 666677 7899999999999999999999999988885 678888887 568889999999999999999999
Q ss_pred CCccceecccccccccccce--EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 247 GQDSRELVPKLSLKAHDGGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V--~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
..+++.|.. ++.| ++++.++ ++.+|++||+.|.|.|||.++...-...+|+..+......|+++.|++
T Consensus 376 ~~~~~rf~D-------~G~v~gts~~~S~---ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 376 NSCLHRFVD-------DGSVHGTSLCISL---NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred cceEEEEee-------cCccceeeeeecC---CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 988877532 2333 4556666 788999999999999999876554445556666677778899999999
Q ss_pred CCCEEE-EecC--Ce--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 325 NLDILT-CVKD--SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 325 dg~iLs-~s~D--g~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
|.++|+ ||.- .. |-.+.+.+. . ...|.. ...-..|+||+|+| ++-++|.|..+|.+ .+|.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TV--F--------sNfP~~---n~~vg~vtc~aFSP-~sG~lAvGNe~grv-~l~k 510 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTV--F--------SNFPTS---NTKVGHVTCMAFSP-NSGYLAVGNEAGRV-HLFK 510 (514)
T ss_pred chhhhhhhhhccccceEEEeccceee--e--------ccCCCC---CCcccceEEEEecC-CCceEEeecCCCce-eeEe
Confidence 999885 4422 22 333332110 0 001100 11223799999999 45569999999997 7996
Q ss_pred CC
Q 000709 400 PR 401 (1339)
Q Consensus 400 ~~ 401 (1339)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 54
No 106
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.81 E-value=2.1e-18 Score=187.31 Aligned_cols=273 Identities=16% Similarity=0.233 Sum_probs=201.1
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccC
Q 000709 9 PTNDKIVKIQLHP-THPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 9 gHs~~V~~vafSP-dg~~LaSgs~DGtIrIWDl~t-g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
.-.+.|.+++||| ...+++.++.||+||+|+++. |..+......+...+..++ .+|..+++|+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~------------- 91 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG------------- 91 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-------------
Confidence 4567899999999 455777899999999999986 4555544434445555554 5555555554
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCC-eEEEEEecCcEE-EEEecCCceeecccccc
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~-~lLasgs~dg~I-~wD~~t~~~~~v~~~~~ 162 (1339)
.|+.+++||+.+++.. ..+.|+..|.++.|-+... .+|++|+.|+++ .||.+.... +.. ..
T Consensus 92 --------~Dk~~k~wDL~S~Q~~------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p--v~t-~~ 154 (347)
T KOG0647|consen 92 --------CDKQAKLWDLASGQVS------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP--VAT-LQ 154 (347)
T ss_pred --------cCCceEEEEccCCCee------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCe--eee-ee
Confidence 5899999999999653 4556689999999876432 389999999999 668876532 212 23
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i-~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
-.+.++++.. ....++++..++.|.+|+++.+... +.+...-+-.+.|++ ..++....+.|+.+|.|-+
T Consensus 155 LPeRvYa~Dv-------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va---~f~d~~~~alGsiEGrv~i 224 (347)
T KOG0647|consen 155 LPERVYAADV-------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVA---CFQDKDGFALGSIEGRVAI 224 (347)
T ss_pred ccceeeehhc-------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEE---EEecCCceEeeeecceEEE
Confidence 3567888877 4668899999999999999765332 333334456778886 3345556699999999999
Q ss_pred EeCCCCCccceeccccccccccc---------ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccc
Q 000709 242 WSADHGQDSRELVPKLSLKAHDG---------GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~---------~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1339)
..+..+... ..++++.|.. .|++++||| -...|+|+|.||++.+||-.....+.+ ...
T Consensus 225 q~id~~~~~----~nFtFkCHR~~~~~~~~VYaVNsi~FhP---~hgtlvTaGsDGtf~FWDkdar~kLk~------s~~ 291 (347)
T KOG0647|consen 225 QYIDDPNPK----DNFTFKCHRSTNSVNDDVYAVNSIAFHP---VHGTLVTAGSDGTFSFWDKDARTKLKT------SET 291 (347)
T ss_pred EecCCCCcc----CceeEEEeccCCCCCCceEEecceEeec---ccceEEEecCCceEEEecchhhhhhhc------cCc
Confidence 999886432 2345566652 488999999 567899999999999999877666555 467
Q ss_pred cCCceeEEEeCCCCCEE--EEecC
Q 000709 313 HSVASWCHPRAPNLDIL--TCVKD 334 (1339)
Q Consensus 313 H~~~V~svafspdg~iL--s~s~D 334 (1339)
|...|+|..|+.+|.++ +.|.|
T Consensus 292 ~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 292 HPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCCccceeEecCCCCEEEEEeecc
Confidence 88999999999999976 45655
No 107
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.81 E-value=1.2e-18 Score=198.16 Aligned_cols=279 Identities=16% Similarity=0.212 Sum_probs=209.6
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCce
Q 000709 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 8 ~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
-.|..-|.++.+|...+++.||+ .|.|+|||+... +.. .+|
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~p--------g~k------------------------------~Pv 456 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQP--------GNK------------------------------SPV 456 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCC--------CCC------------------------------Ccc
Confidence 46888899999999999999985 578999998631 000 010
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCC
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKS 166 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~ 166 (1339)
..+ | |+ ..+..|+++...|||+ -|++|+.-.++ +||+.....+...........
T Consensus 457 sqL----------d-----cl---------~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapTprikaeltssapa 511 (705)
T KOG0639|consen 457 SQL----------D-----CL---------NRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 511 (705)
T ss_pred ccc----------c-----cc---------CcccceeeeEecCCCc-eEEeccccceeeeeeccCCCcchhhhcCCcchh
Confidence 000 0 10 1156788899999998 55555555555 899876543221111122234
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
.+.++. +||.+..++++.||.|.|||+.+...++.|. ||.+.+.||. ++++|..|-+|+.|.+||.||++.
T Consensus 512 CyALa~-----spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascId---is~dGtklWTGGlDntvRcWDlre 582 (705)
T KOG0639|consen 512 CYALAI-----SPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCID---ISKDGTKLWTGGLDNTVRCWDLRE 582 (705)
T ss_pred hhhhhc-----CCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEE---ecCCCceeecCCCccceeehhhhh
Confidence 455677 8899999999999999999999999999998 9999999997 899999999999999999999999
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
+..+.. ......|.++.++| .+.+++.|-..+.+.|-.....+..+ +.-|...|.++.|.+.|
T Consensus 583 grqlqq-------hdF~SQIfSLg~cP---~~dWlavGMens~vevlh~skp~kyq-------lhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 583 GRQLQQ-------HDFSSQIFSLGYCP---TGDWLAVGMENSNVEVLHTSKPEKYQ-------LHLHESCVLSLKFAYCG 645 (705)
T ss_pred hhhhhh-------hhhhhhheecccCC---CccceeeecccCcEEEEecCCcccee-------ecccccEEEEEEecccC
Confidence 876543 22345699999999 78999999999999888876544333 46788999999999999
Q ss_pred CE-EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000709 327 DI-LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1339)
Q Consensus 327 ~i-Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I 394 (1339)
++ ++.|.|.- .|..--+. ..|.......|.|+..|. +..+|+||+.|..-
T Consensus 646 kwfvStGkDnlLnawrtPyGa-----------------siFqskE~SsVlsCDIS~-ddkyIVTGSGdkkA 698 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGA-----------------SIFQSKESSSVLSCDISF-DDKYIVTGSGDKKA 698 (705)
T ss_pred ceeeecCchhhhhhccCcccc-----------------ceeeccccCcceeeeecc-CceEEEecCCCcce
Confidence 95 57889985 68776542 233333344799999998 56779999998653
No 108
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.6e-19 Score=203.86 Aligned_cols=306 Identities=16% Similarity=0.251 Sum_probs=214.8
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec----cccceeEeecccc------
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEH------ 74 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs----~d~~~Lasgs~d~------ 74 (1339)
..|+||++.|.||..+|.|.||++|+.||+|+||.+.||.|++++.... .|.++. ++...|+.+-...
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 4689999999999999999999999999999999999999999988543 455554 3334444432111
Q ss_pred -CC------CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC---cE
Q 000709 75 -KG------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---KA 144 (1339)
Q Consensus 75 -~g------k~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d---g~ 144 (1339)
-| .....+...+ ...+-+..+..|.-.............+.| ...|..+.|+.+|. +|++..-+ ..
T Consensus 472 ~~G~~~e~~~t~ell~~~~--~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~-~k~i~~vtWHrkGD-YlatV~~~~~~~~ 547 (733)
T KOG0650|consen 472 IFGDRLEVGPTKELLASAP--NESEPDAAVVTWSRASLDELEKGVCIVIKH-PKSIRQVTWHRKGD-YLATVMPDSGNKS 547 (733)
T ss_pred cccchhhhcchhhhhhcCC--CccCCcccceeechhhhhhhccceEEEEec-CCccceeeeecCCc-eEEEeccCCCcce
Confidence 00 0111111110 112245677788765433332222334444 77899999999998 66655432 23
Q ss_pred EEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeee
Q 000709 145 IFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMA 223 (1339)
Q Consensus 145 I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~ 223 (1339)
+++ ++...+.. .-+....+.|.++.||| ...++++++. ..|+|||+.....++.+. .....|.+++ .
T Consensus 548 VliHQLSK~~sQ--~PF~kskG~vq~v~FHP-----s~p~lfVaTq-~~vRiYdL~kqelvKkL~-tg~kwiS~ms---i 615 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ--SPFRKSKGLVQRVKFHP-----SKPYLFVATQ-RSVRIYDLSKQELVKKLL-TGSKWISSMS---I 615 (733)
T ss_pred EEEEeccccccc--CchhhcCCceeEEEecC-----CCceEEEEec-cceEEEehhHHHHHHHHh-cCCeeeeeee---e
Confidence 333 65544322 22345577899999964 5677777754 579999998877777776 4556777776 8
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeE--
Q 000709 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL-- 301 (1339)
Q Consensus 224 spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l-- 301 (1339)
++.|..|+.|+.|+.+..+|+.-+.. +..++.-|...|.+|+||+ .-+++++|+.||++.|+.-.-..-+
T Consensus 616 hp~GDnli~gs~d~k~~WfDldlssk-----Pyk~lr~H~~avr~Va~H~---ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 616 HPNGDNLILGSYDKKMCWFDLDLSSK-----PYKTLRLHEKAVRSVAFHK---RYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred cCCCCeEEEecCCCeeEEEEcccCcc-----hhHHhhhhhhhhhhhhhcc---ccceeeeecCCCcEEEEeeeeehhhhc
Confidence 99999999999999999999986642 4456788999999999999 7889999999999999864322111
Q ss_pred -EEecCCCcccccCCc----eeEEEeCCCCCEE-EEecCCe
Q 000709 302 -RRIKPVPKLACHSVA----SWCHPRAPNLDIL-TCVKDSH 336 (1339)
Q Consensus 302 -~~~~~~~~l~~H~~~----V~svafspdg~iL-s~s~Dg~ 336 (1339)
-.+-++..+.+|... |..+.|||...+| ++|.||+
T Consensus 688 npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~t 728 (733)
T KOG0650|consen 688 NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGT 728 (733)
T ss_pred CCceEeeeeccCceeecccceEeecccCCCceEEecCCCce
Confidence 012234557888765 8888999998855 8888886
No 109
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=208.64 Aligned_cols=247 Identities=12% Similarity=0.126 Sum_probs=185.3
Q ss_pred cCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC----------------------------C---c------------
Q 000709 118 NVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT----------------------------M---R------------ 153 (1339)
Q Consensus 118 ~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t----------------------------~---~------------ 153 (1339)
.|.+.|+++.||+||+ +||+|+.|++| +|.+.. . +
T Consensus 265 ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 4588999999999998 99999999999 553322 0 0
Q ss_pred ---e------------eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEE
Q 000709 154 ---G------------RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1339)
Q Consensus 154 ---~------------~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl 218 (1339)
+ +.+..+.+|.+.|..+.| | ..++|+++|.|.+||||++....|++.|. |...|+|+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-----S-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcV 415 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-----S-KNNFLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCV 415 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheeccc-----c-cCCeeEeccccccEEeecCCCcceeeEEe--cCCeeEEE
Confidence 0 011234678888999999 3 56799999999999999999999999994 99999999
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 219 ~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
+ |++.|.++|+|||.||.||||++...+.+. +..-..-|++++|.| +|++.+.|+.+|.+++|+....
T Consensus 416 a--FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-------W~Dl~~lITAvcy~P---dGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 416 A--FNPVDDRYFISGSLDGKVRLWSISDKKVVD-------WNDLRDLITAVCYSP---DGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred E--ecccCCCcEeecccccceEEeecCcCeeEe-------ehhhhhhheeEEecc---CCceEEEEEeccEEEEEEccCC
Confidence 8 367789999999999999999998776442 223336799999999 8999999999999999999987
Q ss_pred eeEEEecCCC---cccccCCceeEEEeCCCCC--EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCc-c
Q 000709 299 KELRRIKPVP---KLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-L 370 (1339)
Q Consensus 299 ~~l~~~~~~~---~l~~H~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~-~ 370 (1339)
+....+.-.. +-..|. .|+.+.|.|... +|..+.|.+ |+|.+.... +..|++... .
T Consensus 484 k~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l---------------v~KfKG~~n~~ 547 (712)
T KOG0283|consen 484 KLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL---------------VHKFKGFRNTS 547 (712)
T ss_pred eEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhh---------------hhhhcccccCC
Confidence 7665542110 111222 799999997644 888999986 788854321 122222111 1
Q ss_pred cEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 371 RVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 371 ~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
.=....|+. ++.+|++|++|..| ++|+....
T Consensus 548 SQ~~Asfs~-Dgk~IVs~seDs~V-YiW~~~~~ 578 (712)
T KOG0283|consen 548 SQISASFSS-DGKHIVSASEDSWV-YIWKNDSF 578 (712)
T ss_pred cceeeeEcc-CCCEEEEeecCceE-EEEeCCCC
Confidence 123356777 67779999999887 79997643
No 110
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=3.6e-18 Score=182.17 Aligned_cols=233 Identities=16% Similarity=0.242 Sum_probs=190.8
Q ss_pred EecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 6 AFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
.++||++.|-.++|+|..+ ++++++.|.+|++||.+.++++..+.....+......|++.+++.+.
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~------------- 125 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGN------------- 125 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEec-------------
Confidence 4679999999999998765 99999999999999999999999998665555555669999988886
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
.|..|.+.|.++.+.... ......+.-++|+-++. +++.....|.+ ++.+.+. +.+.....|
T Consensus 126 --------kdD~it~id~r~~~~~~~------~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsypsL--kpv~si~AH 188 (313)
T KOG1407|consen 126 --------KDDRITFIDARTYKIVNE------EQFKFEVNEISWNNSND-LFFLTNGLGCVEILSYPSL--KPVQSIKAH 188 (313)
T ss_pred --------CcccEEEEEecccceeeh------hcccceeeeeeecCCCC-EEEEecCCceEEEEecccc--ccccccccC
Confidence 466777888777655421 11233467788887777 55555555555 5566644 456678899
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
.....||.| +|+|+++++|+.|..+.+||+...-|.+.+. .+.-+|..+. |+.+|++|++||.|..|-|=+
T Consensus 189 ~snCicI~f-----~p~GryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlS---FS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 189 PSNCICIEF-----DPDGRYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLS---FSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred CcceEEEEE-----CCCCceEeeccccceeeccChhHhhhheeec-cccCceEEEE---eccCcceeeccCccceEEeEe
Confidence 999999999 8999999999999999999999988999987 8999999997 899999999999999999999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC
Q 000709 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1339)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D 287 (1339)
+.+|..+.+ ..|+++-+.|+||| ...+|+-+++|
T Consensus 260 vetGd~~~e-------I~~~~~t~tVAWHP---k~~LLAyA~dd 293 (313)
T KOG1407|consen 260 VETGDRVWE-------IPCEGPTFTVAWHP---KRPLLAYACDD 293 (313)
T ss_pred cccCCeEEE-------eeccCCceeEEecC---CCceeeEEecC
Confidence 999998776 34778899999999 78888877765
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.2e-18 Score=184.24 Aligned_cols=254 Identities=16% Similarity=0.194 Sum_probs=190.5
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCc-eeeccccccCCCCeEEEEEeeccccC-CCCEEEEEECCCcEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~-~~~v~~~~~h~~~V~~vaf~P~s~Sp-dg~~LasGs~DgtIrIW 196 (1339)
.+.|.++...--|+ .|++|+.|++|++ ..+... ...+..+.+|.++|..++|. +| -|.+|++++.||.|.||
T Consensus 11 ~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wa----hPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 11 EDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWA----HPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeec----ccccCcEeeEeecCceEEEE
Confidence 56666676667787 8999999999976 655433 25666789999999999994 22 58999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000709 197 SMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1339)
Q Consensus 197 Dl~t~~~i~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1339)
.-.+++..+... ..|...|++++|- .+.-|-.|++++.||.|.|.+.+.... +........|.-+|++++|.|..
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcC
Confidence 988774433221 3799999999864 677788999999999999999886521 11233457899999999999942
Q ss_pred CCC-----------CEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC-----CEEEEecCCe--E
Q 000709 276 GGS-----------PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-----DILTCVKDSH--I 337 (1339)
Q Consensus 276 ~dg-----------~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-----~iLs~s~Dg~--L 337 (1339)
..+ ..|++|+.|+.|+||+..+++ +....++.+|.+.|+.++|.|.- .+.+||.||+ |
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcc----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 222 579999999999999998863 22234489999999999999973 2668999998 6
Q ss_pred EEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 338 WAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 338 WDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
|..+. ++.. + ....+..-. ..+|.+.||. .+++|+.++.|+.| .+|...
T Consensus 238 wt~~~-e~e~-----w------k~tll~~f~-~~~w~vSWS~-sGn~LaVs~GdNkv-tlwke~ 286 (299)
T KOG1332|consen 238 WTKDE-EYEP-----W------KKTLLEEFP-DVVWRVSWSL-SGNILAVSGGDNKV-TLWKEN 286 (299)
T ss_pred EEecC-ccCc-----c------cccccccCC-cceEEEEEec-cccEEEEecCCcEE-EEEEeC
Confidence 87662 1111 0 011122222 3799999999 68889999999997 788543
No 112
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=4.3e-18 Score=185.79 Aligned_cols=244 Identities=14% Similarity=0.207 Sum_probs=189.5
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--ccc--ceeEeeccccCCCc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKL--EKLAEGELEHKGKP 78 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~--~~Lasgs~d~~gk~ 78 (1339)
.+-.|..|.+.|++++.+ ++|+|||+.|-+|+|||+.+...+..+. .|.+.+.++. +.. ..|.+|+
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~s------- 104 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGS------- 104 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeec-------
Confidence 356789999999999988 9999999999999999999988888776 4566666665 222 2555554
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeec
Q 000709 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI 157 (1339)
Q Consensus 79 ~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v 157 (1339)
.||.|.+|+.....++ ..+..| ...|+.++.+|.++ +.++.+.|+.+ .||+..++.-.+
T Consensus 105 --------------dDG~i~iw~~~~W~~~----~slK~H-~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v 164 (362)
T KOG0294|consen 105 --------------DDGHIIIWRVGSWELL----KSLKAH-KGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFV 164 (362)
T ss_pred --------------CCCcEEEEEcCCeEEe----eeeccc-ccccceeEecCCCc-eEEEEcCCceeeeehhhcCcccee
Confidence 6899999999998775 455555 66799999999998 77788888888 679988865433
Q ss_pred cccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000709 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1339)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg 237 (1339)
..+ ....+-+.| +|.|.+++.++.++ |-+|.+.+-.....+. ....+.|+.|. ++..|++|+.|+
T Consensus 165 ~~L---~~~at~v~w-----~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~--~~~r~l~~~~l----~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 165 LNL---KNKATLVSW-----SPQGDHFVVSGRNK-IDIYQLDNASVFREIE--NPKRILCATFL----DGSELLVGGDNE 229 (362)
T ss_pred ecc---CCcceeeEE-----cCCCCEEEEEeccE-EEEEecccHhHhhhhh--ccccceeeeec----CCceEEEecCCc
Confidence 222 223344899 67899888887765 8899988766655553 23456666543 778999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
.|++||.++..+. +.+.+|...|-++.+.-. +++.+|+|+|.||.|++||++..
T Consensus 230 ~i~~~D~ds~~~~------~~~~AH~~RVK~i~~~~~-~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPL------TEFLAHENRVKDIASYTN-PEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccc------eeeecchhheeeeEEEec-CCceEEEEeccCceEEEEEcccc
Confidence 9999999886544 447999999999985431 36789999999999999999865
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.80 E-value=2.7e-18 Score=195.68 Aligned_cols=262 Identities=15% Similarity=0.223 Sum_probs=190.9
Q ss_pred eEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE----------EEeccCccceEEec---cccceeEe
Q 000709 4 LKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIY----------ELKAGGVDQRRLVG---AKLEKLAE 69 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~----------~~~~~~~~~i~~vs---~d~~~Las 69 (1339)
+..---|.+.|+.+.+-|..+ ++|+.+..+.|.|||+.+..-.. .+. +|...-+.++ ...-.|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~-gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLK-GHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEE-eecccccccccccccceeEee
Confidence 344456899999999999877 67778889999999997532221 222 2222222222 11112222
Q ss_pred eccccCCCccccccCCceEEEEEcCCeEEEEEcCCcccc--ccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-E
Q 000709 70 GELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA--AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-F 146 (1339)
Q Consensus 70 gs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l--~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~ 146 (1339)
++ .|+.|++||+...... ..........|...|..++|++....+++++++|+.+ +
T Consensus 196 ~~---------------------~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~i 254 (422)
T KOG0264|consen 196 GS---------------------DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMI 254 (422)
T ss_pred cc---------------------CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEE
Confidence 22 5899999999876442 1122333444589999999999988899999999988 6
Q ss_pred EEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCC
Q 000709 147 LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASS 225 (1339)
Q Consensus 147 wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~sp 225 (1339)
||.++...+.......|...|.|++|.|. ++..||+||.|++|.+||++.. +++.++. +|...|.++.| .+.
T Consensus 255 wD~R~~~~~~~~~~~ah~~~vn~~~fnp~----~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~W--SPh 327 (422)
T KOG0264|consen 255 WDTRSNTSKPSHSVKAHSAEVNCVAFNPF----NEFILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEW--SPH 327 (422)
T ss_pred EEcCCCCCCCcccccccCCceeEEEeCCC----CCceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEe--CCC
Confidence 69986433344456789999999999653 5788999999999999999975 4566666 99999999996 345
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccce--------ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 226 GEALLVSGGSDGLLILWSADHGQDSRE--------LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 226 dg~~LaSgS~DgtVrVWDl~tg~~~~~--------~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
....|+|++.|+.+.|||+..-...+. ....+.-.||...|..+.|+|. ..-.|+|.+.|+.+.||.+.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~--ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPN--EPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCC--CCeEEEEecCCceEEEeecc
Confidence 677999999999999999975322110 1123455799999999999993 56688899999999999986
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2e-15 Score=178.79 Aligned_cols=266 Identities=17% Similarity=0.213 Sum_probs=196.2
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.+|.|.+|++..+-+.. ....++.+..|-+++|++.++ ++.++..+.+..||+.+++.+. ......+.|++++.
T Consensus 45 t~g~IEiwN~~~~w~~~---~vi~g~~drsIE~L~W~e~~R-LFS~g~sg~i~EwDl~~lk~~~--~~d~~gg~IWsiai 118 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLE---PVIHGPEDRSIESLAWAEGGR-LFSSGLSGSITEWDLHTLKQKY--NIDSNGGAIWSIAI 118 (691)
T ss_pred cCCcEEEEccCCCceee---EEEecCCCCceeeEEEccCCe-EEeecCCceEEEEecccCceeE--EecCCCcceeEEEe
Confidence 68999999999875553 556667788999999998775 6555555555599999886433 35566889999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR 251 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l-~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~ 251 (1339)
+|.+..++.|++||.+..++...+...... ....++.|.++. +++++..|++|+.||.|++||...+..++
T Consensus 119 -----~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsls---w~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 119 -----NPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLS---WNPTGTKIAGGSIDGVIRIWDVKSGQTLH 190 (691)
T ss_pred -----CCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEE---ecCCccEEEecccCceEEEEEcCCCceEE
Confidence 667899999999998888888777654332 224568999998 68999999999999999999999887654
Q ss_pred eec-ccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-E
Q 000709 252 ELV-PKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-I 328 (1339)
Q Consensus 252 ~~~-~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-i 328 (1339)
... ....+.. ...-|+++.|-. ...|++|..-|+|++||...+..++. ...|...|.+++..+++. +
T Consensus 191 ~~~~~~d~l~k~~~~iVWSv~~Lr----d~tI~sgDS~G~V~FWd~~~gTLiqS------~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 191 IITMQLDRLSKREPTIVWSVLFLR----DSTIASGDSAGTVTFWDSIFGTLIQS------HSCHDADVLALAVADNEDRV 260 (691)
T ss_pred EeeecccccccCCceEEEEEEEee----cCcEEEecCCceEEEEcccCcchhhh------hhhhhcceeEEEEcCCCCeE
Confidence 110 0111111 334578888875 46899999999999999999998877 578999999999999966 5
Q ss_pred EEEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 329 LTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 329 Ls~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+++|.|+++..+....... + |.. ......|.. .|.+++..+. .+.+|+.|+++.
T Consensus 261 fsaGvd~~ii~~~~~~~~~--~--wv~-----~~~r~~h~h-dvrs~av~~~---~l~sgG~d~~l~ 314 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKS--E--WVI-----NSRRDLHAH-DVRSMAVIEN---ALISGGRDFTLA 314 (691)
T ss_pred EEccCCCceEEEEecCCcc--c--eee-----eccccCCcc-cceeeeeecc---eEEecceeeEEE
Confidence 5889999876554221100 0 111 111223333 6889998873 789999999863
No 115
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=1e-17 Score=196.64 Aligned_cols=347 Identities=16% Similarity=0.149 Sum_probs=236.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--ccCccceEEec--cccceeEeeccccCCCccccccCCceEE
Q 000709 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELK--AGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 14 V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~--~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
.-++.|++...+|...-.|..+.|||++.-..+.... ..|...|+.+. |.. + .+.+ ...+..+. .-
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~n--v----~~~~---~aclp~~c-F~ 396 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCN--V----HSPT---AACLPRGC-FT 396 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeecccccc--c----cCcc---cccCCccc-ee
Confidence 3467899999999999999999999998643322111 13444454443 100 0 0000 00111111 00
Q ss_pred EEEcCCeEEEEEcCCcccccc---------c-----------------------cccccccCCCCeeeeeeCCCCCeEEE
Q 000709 90 VNFYDDDVRFWQLWRNRAAAA---------E-----------------------APTAVSNVTSGFASPPPSTKGRHFLV 137 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~---------~-----------------------~~~~~~~~~~~V~slafspdg~~lLa 137 (1339)
.+-.|++||+||+..+..-.. . ...........+++++.+|+|+ .|+
T Consensus 397 TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLA 475 (1080)
T KOG1408|consen 397 TCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLA 475 (1080)
T ss_pred EecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-eec
Confidence 111799999999876221000 0 0000011134789999999998 899
Q ss_pred EEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCe
Q 000709 138 ICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSI 215 (1339)
Q Consensus 138 sgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V 215 (1339)
+|...|.+++ ++...+. ....+.|...|.|+.|+-. .-..++|++++.|..|.|||.... .+++++. +|...|
T Consensus 476 sGDr~GnlrVy~Lq~l~~--~~~~eAHesEilcLeyS~p--~~~~kLLASasrdRlIHV~Dv~rny~l~qtld-~HSssI 550 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEY--TCFMEAHESEILCLEYSFP--VLTNKLLASASRDRLIHVYDVKRNYDLVQTLD-GHSSSI 550 (1080)
T ss_pred ccCccCceEEEEehhhhh--hhheecccceeEEEeecCc--hhhhHhhhhccCCceEEEEecccccchhhhhc-ccccce
Confidence 9999999966 8876543 4457899999999999421 113578999999999999999644 5566666 999999
Q ss_pred eEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 216 ~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
+++. |..+.-...+++++.|+.|.+--.+.......+ +..+-.-....++.|+..| ...++++++.|+.|+|||+
T Consensus 551 TsvK-Fa~~gln~~MiscGADksimFr~~qk~~~g~~f-~r~t~t~~ktTlYDm~Vdp---~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 551 TSVK-FACNGLNRKMISCGADKSIMFRVNQKASSGRLF-PRHTQTLSKTTLYDMAVDP---TSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred eEEE-EeecCCceEEEeccCchhhheehhccccCceec-cccccccccceEEEeeeCC---CcceEEEEecccceEEEec
Confidence 9998 323333478999999988764333211111111 1111111124588999999 7889999999999999999
Q ss_pred CCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEE-ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccE
Q 000709 296 VSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC-VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRV 372 (1339)
Q Consensus 296 ~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~-s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I 372 (1339)
++++..+.|+. -.+|.+....+...|.|.+|++ +.|.+ ++|+.+++ ++....+|.. .|
T Consensus 626 ~sgKq~k~FKg---s~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE---------------cvA~m~GHsE-~V 686 (1080)
T KOG1408|consen 626 ESGKQVKSFKG---SRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE---------------CVAQMTGHSE-AV 686 (1080)
T ss_pred cccceeeeecc---cccCCCceEEEEECCCccEEEEeecCCceEEEEeccch---------------hhhhhcCcch-he
Confidence 99999999864 3677777778999999998855 46665 79988764 3556668887 89
Q ss_pred EEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 373 YCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 373 ~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
+++.|.++- ..|++.+.||.| ++|.+..
T Consensus 687 TG~kF~nDC-kHlISvsgDgCI-FvW~lp~ 714 (1080)
T KOG1408|consen 687 TGVKFLNDC-KHLISVSGDGCI-FVWKLPL 714 (1080)
T ss_pred eeeeecccc-hhheeecCCceE-EEEECch
Confidence 999999954 458888999998 7997653
No 116
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.79 E-value=1.1e-18 Score=195.91 Aligned_cols=260 Identities=12% Similarity=0.142 Sum_probs=196.3
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.|..|++|+....++- ....+.+. .+.|.++.|.++++++|+.+.+...-.|++...+. ..++.+|.+.|+++.|
T Consensus 195 ~Dr~Ik~W~v~~~k~~--~~~tLaGs-~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~--~~TLsGHtdkVt~ak~ 269 (459)
T KOG0288|consen 195 SDRIIKLWNVLGEKSE--LISTLAGS-LGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRL--RHTLSGHTDKVTAAKF 269 (459)
T ss_pred hhhhhhhhhcccchhh--hhhhhhcc-CCCcceeeecCCCceEEeecCCCceeeeeccchhh--hhhhcccccceeeehh
Confidence 5778999999887632 23444444 67799999999998555554444455888877654 4467889999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
.-....+++|+.|.+|++||+....|.+++. -...+..|. . ....++||..|++||+||+++..+...
T Consensus 270 -----~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~---~--~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 270 -----KLSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIV---C--SISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred -----hccccceeeccccchhhhhhhhhhheecccc--ccccccceE---e--cceeeeecccccceEEEeccCCceeeE
Confidence 3444459999999999999999998888875 334555554 1 256889999999999999999887654
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~ 331 (1339)
...|. .|+++..++ ++..|.+++.|.++.+.|+++....+.+.......+| ..+.+.|||++.++ +|
T Consensus 338 ------v~~gg-~vtSl~ls~---~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as--DwtrvvfSpd~~YvaAG 405 (459)
T KOG0288|consen 338 ------VPLGG-RVTSLDLSM---DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS--DWTRVVFSPDGSYVAAG 405 (459)
T ss_pred ------eecCc-ceeeEeecc---CCeEEeeecCCCceeeeecccccEEEEeecccccccc--ccceeEECCCCceeeec
Confidence 34443 799999999 8889999999999999999998877776543333333 37789999999977 68
Q ss_pred ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCc-ccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000709 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 332 s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~-~~I~~la~sp~~~~lLatGs~DG~IlriW 398 (1339)
|.||. ||++.++.. ...+..... ..|++++|+|. +..+++++.++.+ .+|
T Consensus 406 S~dgsv~iW~v~tgKl---------------E~~l~~s~s~~aI~s~~W~~s-G~~Llsadk~~~v-~lW 458 (459)
T KOG0288|consen 406 SADGSVYIWSVFTGKL---------------EKVLSLSTSNAAITSLSWNPS-GSGLLSADKQKAV-TLW 458 (459)
T ss_pred cCCCcEEEEEccCceE---------------EEEeccCCCCcceEEEEEcCC-CchhhcccCCcce-Eec
Confidence 89996 899997643 122222222 16999999995 5567888888886 688
No 117
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.79 E-value=5.2e-18 Score=191.24 Aligned_cols=249 Identities=14% Similarity=0.166 Sum_probs=203.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+.+|+||+..|+.+.|||+...+++++.|-.|+||............ .|...+..+. +.+.+|.+.+
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~-~h~~~V~~ls~h~tgeYllsAs---------- 322 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR-PHEEPVTGLSLHPTGEYLLSAS---------- 322 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc-cccccceeeeeccCCcEEEEec----------
Confidence 57899999999999999999999999999999999988766554444 4455566555 8999999887
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.|++..+.|+.++.++.... .......+++.+|+|||- ++.+|..|+.+ +||+.++. .+..+
T Consensus 323 -----------~d~~w~Fsd~~~g~~lt~vs---~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~F 385 (506)
T KOG0289|consen 323 -----------NDGTWAFSDISSGSQLTVVS---DETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAKF 385 (506)
T ss_pred -----------CCceEEEEEccCCcEEEEEe---eccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc--ccccC
Confidence 57788888888887763211 111234689999999996 99999999999 67998875 46678
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
.+|.++|..+.| +.+|.|++++++|+.|++||++..+..+++.......|.+++ |...|.+|+.++.|=+|.
T Consensus 386 pght~~vk~i~F-----sENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~---fD~SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 386 PGHTGPVKAISF-----SENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS---FDQSGTYLGIAGSDLQVY 457 (506)
T ss_pred CCCCCceeEEEe-----ccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE---EcCCCCeEEeecceeEEE
Confidence 889999999999 899999999999999999999988888887644555788887 899999999998887777
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
+++-.+.. |.....+..|.+..+++.|.. ..++++++|.|..++++.+
T Consensus 458 ~~~k~~k~----W~~~~~~~~~sg~st~v~Fg~---~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKS----WTEIKELADHSGLSTGVRFGE---HAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeccccc----ceeeehhhhcccccceeeecc---cceEEeeccchhheEEeec
Confidence 77754433 333445677888899999987 6789999999999998864
No 118
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.79 E-value=2.1e-17 Score=179.58 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=192.0
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCC-ceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTM-RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~-~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
..+.|.+++|||....++++++.|+.|| |+++.. .. .-+....|.++|.|++| +.||..+++|+.|+.+++|
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~-~~ka~~~~~~PvL~v~W-----sddgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL-VPKAQQSHDGPVLDVCW-----SDDGSKVFSGGCDKQAKLW 99 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcc-cchhhhccCCCeEEEEE-----ccCCceEEeeccCCceEEE
Confidence 3678999999997766888999999995 577653 32 22345678999999999 8899999999999999999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
|+.+++....- .|.++|.++.|+ -.....+|++||.|.+|++||.+....+.+ +. -...|+++..-
T Consensus 100 DL~S~Q~~~v~--~Hd~pvkt~~wv-~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t------~~-LPeRvYa~Dv~---- 165 (347)
T KOG0647|consen 100 DLASGQVSQVA--AHDAPVKTCHWV-PGMNYQCLVTGSWDKTLKFWDTRSSNPVAT------LQ-LPERVYAADVL---- 165 (347)
T ss_pred EccCCCeeeee--ecccceeEEEEe-cCCCcceeEecccccceeecccCCCCeeee------ee-ccceeeehhcc----
Confidence 99999665443 799999999986 444567999999999999999998775543 22 23457777754
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe--EEEccCCcccccccCcc
Q 000709 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~ 353 (1339)
..+++.+..++.|.+|+++++..... .. .....-.++|++..+|.+ ++.|+-+|+ |..++.+.-
T Consensus 166 -~pm~vVata~r~i~vynL~n~~te~k--~~--~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-------- 232 (347)
T KOG0647|consen 166 -YPMAVVATAERHIAVYNLENPPTEFK--RI--ESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-------- 232 (347)
T ss_pred -CceeEEEecCCcEEEEEcCCCcchhh--hh--cCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--------
Confidence 36999999999999999976543221 11 111223567888888866 667888887 555554311
Q ss_pred ccCCCCCCeEEccCC--------cccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCceEEEEec
Q 000709 354 ELSSLVPPQVLAHHK--------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVE 425 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~--------~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~~~~~s~~~s~~~~~~ 425 (1339)
..-.+|+-|. -..|++|+|||..+ .|+|.+.||++ ..||-..+..+.+.++.++. -..+.|-.+
T Consensus 233 -----~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf-~FWDkdar~kLk~s~~~~qp-Itcc~fn~~ 304 (347)
T KOG0647|consen 233 -----KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTF-SFWDKDARTKLKTSETHPQP-ITCCSFNRN 304 (347)
T ss_pred -----cCceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceE-EEecchhhhhhhccCcCCCc-cceeEecCC
Confidence 1112222222 23588999999655 48999999997 79998887777665444332 123344445
Q ss_pred CeE
Q 000709 426 REL 428 (1339)
Q Consensus 426 ~~l 428 (1339)
+.+
T Consensus 305 G~i 307 (347)
T KOG0647|consen 305 GSI 307 (347)
T ss_pred CCE
Confidence 543
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.1e-17 Score=182.65 Aligned_cols=269 Identities=16% Similarity=0.197 Sum_probs=198.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-cccceeEeeccccCCCccccccCCceE
Q 000709 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 10 Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
-.+.|..|.|+|.+..|+.++.||++++||.........++.. ..+...+ .+...+++|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~--~plL~c~F~d~~~~~~G~----------------- 72 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHG--APLLDCAFADESTIVTGG----------------- 72 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecC--CceeeeeccCCceEEEec-----------------
Confidence 3678999999999998888899999999999987666666522 2222222 2233333332
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCe
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSL 167 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V 167 (1339)
.||.|+.+|+.++.. ...+.|...++|+.+++-.. .+++|+.|+.| +||.+.... +.. ......|
T Consensus 73 ----~dg~vr~~Dln~~~~------~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~--~~~-~d~~kkV 138 (323)
T KOG1036|consen 73 ----LDGQVRRYDLNTGNE------DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVV--VGT-FDQGKKV 138 (323)
T ss_pred ----cCceEEEEEecCCcc------eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEecccccc--ccc-cccCceE
Confidence 589999999999854 35666789999999998665 89999999999 778876321 111 2234589
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l-~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
.|+.. .++.|++|+.|..+.+||+++.....+. ...-+-.+.|++ .-|++.-++.+|.||.|.+=.++.
T Consensus 139 y~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~---~~pn~eGy~~sSieGRVavE~~d~ 208 (323)
T KOG1036|consen 139 YCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVA---LVPNGEGYVVSSIEGRVAVEYFDD 208 (323)
T ss_pred EEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEE---EecCCCceEEEeecceEEEEccCC
Confidence 99988 5889999999999999999976544322 224556788887 344777788899999999876665
Q ss_pred CCccceecccccccccc---------cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce
Q 000709 247 GQDSRELVPKLSLKAHD---------GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~---------~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V 317 (1339)
...... .++.++.|. -+|++++||| -...|+||+.||.|.+||+.+.+.+..+ ......|
T Consensus 209 s~~~~s--kkyaFkCHr~~~~~~~~~yPVNai~Fhp---~~~tfaTgGsDG~V~~Wd~~~rKrl~q~------~~~~~SI 277 (323)
T KOG1036|consen 209 SEEAQS--KKYAFKCHRLSEKDTEIIYPVNAIAFHP---IHGTFATGGSDGIVNIWDLFNRKRLKQL------AKYETSI 277 (323)
T ss_pred chHHhh--hceeEEeeecccCCceEEEEeceeEecc---ccceEEecCCCceEEEccCcchhhhhhc------cCCCCce
Confidence 533221 234455554 3699999999 4678999999999999999988877663 4445678
Q ss_pred eEEEeCCCCCEEEEe
Q 000709 318 WCHPRAPNLDILTCV 332 (1339)
Q Consensus 318 ~svafspdg~iLs~s 332 (1339)
.+++|+.+|..|+.+
T Consensus 278 ~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 278 SSLSFSMDGSLLAIA 292 (323)
T ss_pred EEEEeccCCCeEEEE
Confidence 899999999988654
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1e-17 Score=181.56 Aligned_cols=223 Identities=22% Similarity=0.353 Sum_probs=184.7
Q ss_pred EEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCe
Q 000709 136 LVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSI 215 (1339)
Q Consensus 136 Lasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V 215 (1339)
+++...++++.. +.+..+.+|.+.|+.++. ....+.+.+++.|.+.+||.++++.|+.++. ||.+.|
T Consensus 127 ivssFk~~t~~~-------~lvre~~GHkDGiW~Vaa-----~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSV 193 (481)
T KOG0300|consen 127 IVSSFKDGTVKF-------RLVRELEGHKDGIWHVAA-----DSTQPICGTASADHTARIWSLESGACLATYT-GHTGSV 193 (481)
T ss_pred heeeecCCceeE-------eehhhhcccccceeeehh-----hcCCcceeecccccceeEEeeccccceeeec-ccccce
Confidence 455555555433 334557899999999988 5567789999999999999999999999998 999999
Q ss_pred eEEEEeeeCCCCCEEEEEeCCCcEEEEeC------CCC------------------------------Cccceecccccc
Q 000709 216 SCLMTFMASSGEALLVSGGSDGLLILWSA------DHG------------------------------QDSRELVPKLSL 259 (1339)
Q Consensus 216 ~sl~wf~~spdg~~LaSgS~DgtVrVWDl------~tg------------------------------~~~~~~~~~~~l 259 (1339)
+|+. |++.+.+++++|.|++-.||.. ... ..++ .|...+
T Consensus 194 Nsik---fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiR--vPl~~l 268 (481)
T KOG0300|consen 194 NSIK---FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIR--VPLMRL 268 (481)
T ss_pred eeEE---eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceee--eeeeee
Confidence 9998 8999999999999999999972 110 0011 356678
Q ss_pred cccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--
Q 000709 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH-- 336 (1339)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~-- 336 (1339)
.+|...|.+..|-. +++.+++++.|++-.+||++++..++. +.||....+.++-+|..+++ +.+.|.+
T Consensus 269 tgH~~vV~a~dWL~---gg~Q~vTaSWDRTAnlwDVEtge~v~~------LtGHd~ELtHcstHptQrLVvTsSrDtTFR 339 (481)
T KOG0300|consen 269 TGHRAVVSACDWLA---GGQQMVTASWDRTANLWDVETGEVVNI------LTGHDSELTHCSTHPTQRLVVTSSRDTTFR 339 (481)
T ss_pred eccccceEehhhhc---CcceeeeeeccccceeeeeccCceecc------ccCcchhccccccCCcceEEEEeccCceeE
Confidence 99999999999998 799999999999999999999998887 78999999999999998866 7788885
Q ss_pred EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 337 LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
+||++.. ......|.+|.+ .|+++.|.. +..+++|++|.+| ++||++.+
T Consensus 340 LWDFRea--------------I~sV~VFQGHtd-tVTS~vF~~--dd~vVSgSDDrTv-KvWdLrNM 388 (481)
T KOG0300|consen 340 LWDFREA--------------IQSVAVFQGHTD-TVTSVVFNT--DDRVVSGSDDRTV-KVWDLRNM 388 (481)
T ss_pred eccchhh--------------cceeeeeccccc-ceeEEEEec--CCceeecCCCceE-EEeeeccc
Confidence 8999842 123567889988 899999998 3449999999997 89998853
No 121
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-16 Score=166.99 Aligned_cols=253 Identities=17% Similarity=0.209 Sum_probs=186.8
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-----EEEe--ccCccceEEec---cccceeEeecc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI-----YELK--AGGVDQRRLVG---AKLEKLAEGEL 72 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l-----~~~~--~~~~~~i~~vs---~d~~~Lasgs~ 72 (1339)
+.+.-+.|.+.|.|.+|||+|.+|++|+.|.+|++.-.....+- .+|. .+......++. ..+.+|++++.
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 45667789999999999999999999999999999765432221 1222 11111122222 23444554431
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC
Q 000709 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT 151 (1339)
Q Consensus 73 d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t 151 (1339)
.|..|.+-|..+++.. ....+| ++.|.++- +=++ .++++|+.|++| +||++-
T Consensus 161 --------------------gdc~iy~tdc~~g~~~----~a~sgh-tghilaly-swn~-~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 161 --------------------GDCKIYITDCGRGQGF----HALSGH-TGHILALY-SWNG-AMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred --------------------CcceEEEeecCCCCcc----eeecCC-cccEEEEE-EecC-cEEEccCCCceEEEEeeec
Confidence 3667777788777665 344455 55566553 2234 499999999999 568876
Q ss_pred CceeeccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC
Q 000709 152 MRGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1339)
Q Consensus 152 ~~~~~v~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spd 226 (1339)
..+....-...| ...|..++. .|.|+++++|-.|....+||++.++.++.+. .|...|.|+. |+|.
T Consensus 214 ~~~v~~l~~~~~~~glessavaav~v-----dpsgrll~sg~~dssc~lydirg~r~iq~f~-phsadir~vr---fsp~ 284 (350)
T KOG0641|consen 214 NSCVNTLDNDFHDGGLESSAVAAVAV-----DPSGRLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVR---FSPG 284 (350)
T ss_pred cceeeeccCcccCCCcccceeEEEEE-----CCCcceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEE---eCCC
Confidence 554433222333 357889999 7899999999999999999999999999997 8999999998 8999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 227 g~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
..++++|+.|..|++-|+.. ...+++ +...+..|.+.+..+.|+| ..--+++.+.|+++.+|-+.
T Consensus 285 a~yllt~syd~~ikltdlqg-dla~el-~~~vv~ehkdk~i~~rwh~---~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQG-DLAHEL-PIMVVAEHKDKAIQCRWHP---QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceEEEEecccceEEEeeccc-chhhcC-ceEEEEeccCceEEEEecC---ccceeeeccCcceEEEeccC
Confidence 99999999999999999974 333332 3445677999999999999 56778899999999999764
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.78 E-value=1.7e-18 Score=206.42 Aligned_cols=238 Identities=20% Similarity=0.272 Sum_probs=190.1
Q ss_pred CeeeeeeCCCCCeEEEEEecCcEE-EEEecC-CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000709 122 GFASPPPSTKGRHFLVICCVNKAI-FLDLVT-MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~dg~I-~wD~~t-~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~ 199 (1339)
.+..+.|+.-..++|++++.+|.| +||+.. .+.+.+..+..|...++++.||+ -...+|++||.||+|++||++
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~----tep~iliSGSQDg~vK~~DlR 164 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHS----TEPNILISGSQDGTVKCWDLR 164 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeecc----CCccEEEecCCCceEEEEeee
Confidence 345677876666699999999988 788865 22334456788999999999984 567899999999999999999
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
..+...++. +....|..+.| ....++.|+++.+.|.+++||++.... +...+.+|.+.|.|+.||| ++.
T Consensus 165 ~~~S~~t~~-~nSESiRDV~f--sp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~~k~~AH~GpV~c~nwhP---nr~ 233 (839)
T KOG0269|consen 165 SKKSKSTFR-SNSESIRDVKF--SPGYGNKFASIHDSGYLQLWDLRQPDR-----CEKKLTAHNGPVLCLNWHP---NRE 233 (839)
T ss_pred ccccccccc-ccchhhhceee--ccCCCceEEEecCCceEEEeeccCchh-----HHHHhhcccCceEEEeecC---CCc
Confidence 988888887 78889999984 345688999999999999999997653 2234789999999999999 899
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecCCCccccc-CCceeEEEeCCCCC-EE-EEecCC----eEEEccCCcccccccCc
Q 000709 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACH-SVASWCHPRAPNLD-IL-TCVKDS----HIWAIEHPTYSALTRPL 352 (1339)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H-~~~V~svafspdg~-iL-s~s~Dg----~LWDi~t~~~~~~~~~l 352 (1339)
+|+|||.|+.|+|||+.+.+.-.. ..-+ ...|.+|.|-|... .| +|+.-+ +|||++..
T Consensus 234 ~lATGGRDK~vkiWd~t~~~~~~~------~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--------- 298 (839)
T KOG0269|consen 234 WLATGGRDKMVKIWDMTDSRAKPK------HTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--------- 298 (839)
T ss_pred eeeecCCCccEEEEeccCCCccce------eEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc---------
Confidence 999999999999999986553221 1222 24678999999866 33 454322 39999964
Q ss_pred cccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 353 CELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 353 ~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
..|..++..|.. .++.++|...+...+.+++.||+|+
T Consensus 299 -----YIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 299 -----YIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred -----cccceeeeccCc-cccceeccCCCceeeEeecCccHHH
Confidence 366788888888 8999999987788899999999974
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=8.3e-18 Score=191.76 Aligned_cols=290 Identities=14% Similarity=0.213 Sum_probs=204.0
Q ss_pred cCCeEEEEEcCCcccccccccc-ccccCCCCeeeeeeCCCCCeEEEEEecCc-EE-EEEecCCceeeccccccCCCCeEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPT-AVSNVTSGFASPPPSTKGRHFLVICCVNK-AI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~-~~~~~~~~V~slafspdg~~lLasgs~dg-~I-~wD~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
....+.+||++++......... ...++. .-.. .+. +++++...+ .+ +|.+... ........-.+.|.|
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~~s----l~~l--~~~-yllsaq~~rp~l~vw~i~k~--~~~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQAAS----LTAL--NNE-YLLSAQLKRPLLHVWEILKK--DQVVQYIVLPGPVHA 86 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccchh----hhhh--chh-heeeecccCccccccccCch--hhhhhhcccccceee
Confidence 4567899999998665321111 111100 0011 123 444444333 33 5544321 111122334678999
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC--
Q 000709 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG-- 247 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg-- 247 (1339)
++- +|+|.+++.|+-.|.|++|.+.+|.++..+. +|-..|+|+. |+.|+.+|+|||.||.|.+|++..-
T Consensus 87 l~s-----~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~---fs~dgs~iiTgskDg~V~vW~l~~lv~ 157 (476)
T KOG0646|consen 87 LAS-----SNLGYFLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLK---FSDDGSHIITGSKDGAVLVWLLTDLVS 157 (476)
T ss_pred eec-----CCCceEEEeecccCcEEEEEeccccHHHHHH-hhccceeEEE---EeCCCcEEEecCCCccEEEEEEEeecc
Confidence 988 7899999999999999999999999999886 9999999998 8999999999999999999987431
Q ss_pred -CccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 248 -QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 248 -~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
...+...+.+.+..|.-.|+++...+. +-..+|+|+|.|.++++||+..+..+.++ .....+.+++.+|-.
T Consensus 158 a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~D~t~k~wdlS~g~LLlti-------~fp~si~av~lDpae 229 (476)
T KOG0646|consen 158 ADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASEDRTIKLWDLSLGVLLLTI-------TFPSSIKAVALDPAE 229 (476)
T ss_pred cccCCCccceeeeccCcceeEEEEecCC-CccceEEEecCCceEEEEEeccceeeEEE-------ecCCcceeEEEcccc
Confidence 111133466778999999999998872 13469999999999999999999988874 234567799999998
Q ss_pred CEE-EEecCCeEEEccCCcccccccC---ccccCCCCCCeEEccCCc-ccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 327 DIL-TCVKDSHIWAIEHPTYSALTRP---LCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 327 ~iL-s~s~Dg~LWDi~t~~~~~~~~~---l~~~~~~~~~~tl~~~~~-~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
+.+ .|+++|.||-..--........ ............+.+|.. ..|+|++.+- ++.+|++|+.||.| ++||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~V-cvWdi~ 307 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKV-CVWDIY 307 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCE-EEEecc
Confidence 855 8889999875542211111110 111122233445666654 5899999999 68999999999998 899999
Q ss_pred CCCCccccC
Q 000709 402 SLPAVAPLP 410 (1339)
Q Consensus 402 ~~p~i~~~~ 410 (1339)
+++.+.++.
T Consensus 308 S~Q~iRtl~ 316 (476)
T KOG0646|consen 308 SKQCIRTLQ 316 (476)
T ss_pred hHHHHHHHh
Confidence 988887764
No 124
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.77 E-value=6.6e-16 Score=176.64 Aligned_cols=270 Identities=12% Similarity=0.107 Sum_probs=183.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeE-eeccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000709 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLA-EGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1339)
Q Consensus 23 g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~La-sgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWD 101 (1339)
+..++|++.|+.|++||..+++.+..+..+.......+.++++.++ ++. .++.|++||
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~---------------------~~~~v~~~d 59 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS---------------------DSDTIQVID 59 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC---------------------CCCeEEEEE
Confidence 3578899999999999999999988887543323334457777653 332 478999999
Q ss_pred cCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCC
Q 000709 102 LWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD 180 (1339)
Q Consensus 102 l~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spd 180 (1339)
..+++... ....+ ..+..++|+|+++.++++++.++.+ +||+.+.+. +.... +...+.+++| +|+
T Consensus 60 ~~~~~~~~----~~~~~--~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~--~~~~~-~~~~~~~~~~-----~~d 125 (300)
T TIGR03866 60 LATGEVIG----TLPSG--PDPELFALHPNGKILYIANEDDNLVTVIDIETRKV--LAEIP-VGVEPEGMAV-----SPD 125 (300)
T ss_pred CCCCcEEE----eccCC--CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE--EeEee-CCCCcceEEE-----CCC
Confidence 98876542 11111 2246788999998565666667777 669887543 21222 2345688999 789
Q ss_pred CCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE-EEeCCCcEEEEeCCCCCccceeccccc
Q 000709 181 VPLVAFGSSDG-VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSADHGQDSRELVPKLS 258 (1339)
Q Consensus 181 g~~LasGs~Dg-tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~La-SgS~DgtVrVWDl~tg~~~~~~~~~~~ 258 (1339)
+.++++++.++ .+.+||..+++....+. ......++. +++++++|+ ++..++.|++||+.+++....+....
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~---~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~- 199 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAE---FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEI- 199 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEE---ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecc-
Confidence 99999988765 56778999887766554 223445665 688998875 44569999999999887655421100
Q ss_pred ccccc--cceEEEEeeccCCCCCEEE-EEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EE-ec
Q 000709 259 LKAHD--GGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC-VK 333 (1339)
Q Consensus 259 l~gH~--~~V~svafsp~~~dg~~La-Sgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~-s~ 333 (1339)
-..+. .....+.|+| ++++++ +.+.++.|.+||+++++.+..+ .+...+++++|+|+|+.| ++ +.
T Consensus 200 ~~~~~~~~~~~~i~~s~---dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~g~~l~~~~~~ 269 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTK---DGKTAFVALGPANRVAVVDAKTYEVLDYL-------LVGQRVWQLAFTPDEKYLLTTNGV 269 (300)
T ss_pred cccccccCCccceEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEE-------EeCCCcceEEECCCCCEEEEEcCC
Confidence 00011 1235688998 677654 4456778999999988876553 233468899999999966 33 34
Q ss_pred CCe--EEEccCC
Q 000709 334 DSH--IWAIEHP 343 (1339)
Q Consensus 334 Dg~--LWDi~t~ 343 (1339)
++. +||+.++
T Consensus 270 ~~~i~v~d~~~~ 281 (300)
T TIGR03866 270 SNDVSVIDVAAL 281 (300)
T ss_pred CCeEEEEECCCC
Confidence 665 8999875
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=1.2e-16 Score=174.65 Aligned_cols=245 Identities=16% Similarity=0.215 Sum_probs=177.7
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
...|.++.|+|.+. .|++++.|+.+++ |..... ....-.|..++.+++|. +...+++|+.||.|+.+|+
T Consensus 13 ~d~IS~v~f~~~~~-~LLvssWDgslrlYdv~~~~---l~~~~~~~~plL~c~F~------d~~~~~~G~~dg~vr~~Dl 82 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS-DLLVSSWDGSLRLYDVPANS---LKLKFKHGAPLLDCAFA------DESTIVTGGLDGQVRRYDL 82 (323)
T ss_pred hhceeeEEEcCcCC-cEEEEeccCcEEEEeccchh---hhhheecCCceeeeecc------CCceEEEeccCceEEEEEe
Confidence 56799999998887 6666779998866 776653 22345678999999993 4678999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000709 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1339)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1339)
.++.....- .|...|.|+. ..+....+++||.|++|++||.+....... +. ....|.++... +
T Consensus 83 n~~~~~~ig--th~~~i~ci~---~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~------~d-~~kkVy~~~v~-----g 145 (323)
T KOG1036|consen 83 NTGNEDQIG--THDEGIRCIE---YSYEVGCVISGSWDKTIKFWDPRNKVVVGT------FD-QGKKVYCMDVS-----G 145 (323)
T ss_pred cCCcceeec--cCCCceEEEE---eeccCCeEEEcccCccEEEEeccccccccc------cc-cCceEEEEecc-----C
Confidence 988765443 6999999997 667788999999999999999997543332 22 33478888875 5
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCeEE--EccCCcccccccCcccc
Q 000709 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSHIW--AIEHPTYSALTRPLCEL 355 (1339)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~LW--Di~t~~~~~~~~~l~~~ 355 (1339)
+.|+.|+.|..|.+||+++.....+.. -....-.++|+++.|++. ++++|-||++. .++......
T Consensus 146 ~~LvVg~~~r~v~iyDLRn~~~~~q~r----eS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~-------- 213 (323)
T KOG1036|consen 146 NRLVVGTSDRKVLIYDLRNLDEPFQRR----ESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ-------- 213 (323)
T ss_pred CEEEEeecCceEEEEEcccccchhhhc----cccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh--------
Confidence 799999999999999999766433210 123334578999999765 88899999842 222211100
Q ss_pred CCCCCCeEEccCC--------cccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccc
Q 000709 356 SSLVPPQVLAHHK--------KLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAP 408 (1339)
Q Consensus 356 ~~~~~~~tl~~~~--------~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~ 408 (1339)
.....|+-|. -.+|++|+|||- ...++||+.||.| .+||+..+..+..
T Consensus 214 ---skkyaFkCHr~~~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V-~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 214 ---SKKYAFKCHRLSEKDTEIIYPVNAIAFHPI-HGTFATGGSDGIV-NIWDLFNRKRLKQ 269 (323)
T ss_pred ---hhceeEEeeecccCCceEEEEeceeEeccc-cceEEecCCCceE-EEccCcchhhhhh
Confidence 0011222222 137899999995 5569999999998 6999776544443
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=4.1e-17 Score=185.44 Aligned_cols=303 Identities=17% Similarity=0.238 Sum_probs=201.7
Q ss_pred eEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHP--WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~--~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
....+-|..+|++++|||..+ ++|+|+..|.|-+||+.+.+..
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d----------------------------------- 223 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD----------------------------------- 223 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----------------------------------
Confidence 456678999999999999765 8889999999999998632110
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~ 160 (1339)
.++ +.+ ...|...|.++.|+|.....+.+.+.||++++ |++......+...
T Consensus 224 -----------~d~-v~~----------------f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~ 275 (498)
T KOG4328|consen 224 -----------KDG-VYL----------------FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL 275 (498)
T ss_pred -----------cCc-eEE----------------eccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc
Confidence 011 111 11125678999999988888999999999988 9887765555444
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~-i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
......+..+.| +.+...++.|..=|...+||.+++.. ...+. -|...|.+++ ..+-...+|+|||.|+++
T Consensus 276 ~~d~~~fs~~d~-----~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~--~NP~~p~~laT~s~D~T~ 347 (498)
T KOG4328|consen 276 DTDNIWFSSLDF-----SAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVA--LNPVCPWFLATASLDQTA 347 (498)
T ss_pred Cccceeeeeccc-----cCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceee--cCCCCchheeecccCcce
Confidence 445566777888 56777788888778999999997654 44444 7888999997 244456789999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC----CCeeEEEecCCCcccccCC
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV----SFKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~----t~~~l~~~~~~~~l~~H~~ 315 (1339)
+|||++.-..-.. |......|...|+++.|+|. ++. |+|.+.|..|+|||.. ......++.. ....+.--
T Consensus 348 kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs--~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~H-n~~t~Rwl 421 (498)
T KOG4328|consen 348 KIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPS--GGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPH-NNRTGRWL 421 (498)
T ss_pred eeeehhhhcCCCC--cceecccccceeeeeEEcCC--CCc-eEeeccCCceEEeecccccccCCccceeec-cCcccccc
Confidence 9999986443222 23345679999999999993 454 9999999999999984 2222222210 00010111
Q ss_pred ceeEEEeCCCCCEEEEecCCe---EEEccCCcccccccCccccCCCCCCeEEccCCcccEE-EEEEecCCCcEEEEEECC
Q 000709 316 ASWCHPRAPNLDILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVY-CMVAHSLQPHLVATGTNV 391 (1339)
Q Consensus 316 ~V~svafspdg~iLs~s~Dg~---LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~-~la~sp~~~~lLatGs~D 391 (1339)
......|.|+..++..+.-.+ |+|-..+. .+..+.......|. -..|||.+..+++-|+..
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---------------~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---------------MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cchhheeCCCccEEEEeccCcceeEEcCCCCE---------------EeeeccCccccccccceeecccccceeccCCcc
Confidence 233678999887776654433 56555331 11121111111233 347999644445545555
Q ss_pred CeEEEEec
Q 000709 392 GVIISEFD 399 (1339)
Q Consensus 392 G~IlriWd 399 (1339)
|.| .+|.
T Consensus 487 Gki-~vft 493 (498)
T KOG4328|consen 487 GKI-YVFT 493 (498)
T ss_pred ceE-EEEe
Confidence 665 6774
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.76 E-value=2.1e-17 Score=195.29 Aligned_cols=235 Identities=19% Similarity=0.298 Sum_probs=182.7
Q ss_pred eEEecCCCCCEEE-EEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVK-IQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~-vafSPd-g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
.+.+++|.+.|.+ ++|-+. +-.|++|+.|++|.+|......++..+..|
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH----------------------------- 100 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGH----------------------------- 100 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcc-----------------------------
Confidence 4567888888888 888763 335888999999999998877776666522
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~ 161 (1339)
.+.|.|+....++ .+++||.|.+++++... ++ .....
T Consensus 101 --------------------------------------~snVC~ls~~~~~--~~iSgSWD~TakvW~~~-~l--~~~l~ 137 (745)
T KOG0301|consen 101 --------------------------------------KSNVCSLSIGEDG--TLISGSWDSTAKVWRIG-EL--VYSLQ 137 (745)
T ss_pred --------------------------------------ccceeeeecCCcC--ceEecccccceEEecch-hh--hcccC
Confidence 3445555555555 37888888888432221 12 23368
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
+|...|+++.++| ++ .++|||.|.+|++|.- ++++++|. ||++.|..++. - ++..|+||+.||.|++
T Consensus 138 gH~asVWAv~~l~-----e~-~~vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~v---l-~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 138 GHTASVWAVASLP-----EN-TYVTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAV---L-DDSHFLSCSNDGSIRL 204 (745)
T ss_pred CcchheeeeeecC-----CC-cEEeccCcceeeeccC--Cchhhhhc-cchhheeeeEE---e-cCCCeEeecCCceEEE
Confidence 9999999999964 44 8999999999999975 78888987 99999999983 2 4457899999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
|++ +|.++.+ +.||+.-|+++...+ ++..++|++.|++++||+.. .+.+.+ .--+..||++.
T Consensus 205 w~~-~ge~l~~------~~ghtn~vYsis~~~---~~~~Ivs~gEDrtlriW~~~--e~~q~I------~lPttsiWsa~ 266 (745)
T KOG0301|consen 205 WDL-DGEVLLE------MHGHTNFVYSISMAL---SDGLIVSTGEDRTLRIWKKD--ECVQVI------TLPTTSIWSAK 266 (745)
T ss_pred Eec-cCceeee------eeccceEEEEEEecC---CCCeEEEecCCceEEEeecC--ceEEEE------ecCccceEEEE
Confidence 999 5666554 689999999999666 67899999999999999987 566653 23344899999
Q ss_pred eCCCCCEEEEecCCe--EEEcc
Q 000709 322 RAPNLDILTCVKDSH--IWAIE 341 (1339)
Q Consensus 322 fspdg~iLs~s~Dg~--LWDi~ 341 (1339)
+-++|++++|+.||. ||...
T Consensus 267 ~L~NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred EeeCCCEEEeccCceEEEEEec
Confidence 999999999999997 56554
No 128
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.76 E-value=6.3e-16 Score=176.80 Aligned_cols=264 Identities=17% Similarity=0.147 Sum_probs=182.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWL-VTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~L-aSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
++.+.+|. .+.+++|+|++..+ ++++.++.|++||..+++.+..+..++......+.++++.++....
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---------- 92 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE---------- 92 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC----------
Confidence 45666554 47889999999976 5677889999999999988887765443334445577776654321
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc-EE-EEEecCCceeecccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg-~I-~wD~~t~~~~~v~~~ 160 (1339)
.++.+++||+.+.+.+. ... . ...+.+++|+|+++ +++++..++ .+ .||..+++... .
T Consensus 93 ----------~~~~l~~~d~~~~~~~~----~~~-~-~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~--~- 152 (300)
T TIGR03866 93 ----------DDNLVTVIDIETRKVLA----EIP-V-GVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVD--N- 152 (300)
T ss_pred ----------CCCeEEEEECCCCeEEe----Eee-C-CCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEE--E-
Confidence 37899999998875542 111 1 22357899999998 666666554 44 44877654322 1
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCC-----CCCe--eEEEEeeeCCCCCEEEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGGH-----KGSI--SCLMTFMASSGEALLVS 232 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasG-s~DgtIrIWDl~t~~~i~~l~~gH-----~~~V--~sl~wf~~spdg~~LaS 232 (1339)
......+.++.| ++++++++.+ ..++.|++||+++++.+..+. .+ ...+ ..+. ++++++.++.
T Consensus 153 ~~~~~~~~~~~~-----s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~---~s~dg~~~~~ 223 (300)
T TIGR03866 153 VLVDQRPRFAEF-----TADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIK---LTKDGKTAFV 223 (300)
T ss_pred EEcCCCccEEEE-----CCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceE---ECCCCCEEEE
Confidence 122345678889 7899888654 469999999999988877664 22 1222 2343 7899987544
Q ss_pred -EeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE-eCCCcEEEEECCCCeeEEEecCCCcc
Q 000709 233 -GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKL 310 (1339)
Q Consensus 233 -gS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg-s~Dg~IrIWDl~t~~~l~~~~~~~~l 310 (1339)
.+.++.|.+||+.+++.... ..+...+.+++|+| ++.+|+++ +.++.|++||+.+++++.+++
T Consensus 224 ~~~~~~~i~v~d~~~~~~~~~-------~~~~~~~~~~~~~~---~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~----- 288 (300)
T TIGR03866 224 ALGPANRVAVVDAKTYEVLDY-------LLVGQRVWQLAFTP---DEKYLLTTNGVSNDVSVIDVAALKVIKSIK----- 288 (300)
T ss_pred EcCCCCeEEEEECCCCcEEEE-------EEeCCCcceEEECC---CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-----
Confidence 45677899999988765432 12345789999999 78888876 569999999999999888852
Q ss_pred cccCCceeEEEeCC
Q 000709 311 ACHSVASWCHPRAP 324 (1339)
Q Consensus 311 ~~H~~~V~svafsp 324 (1339)
. ....+.++++|
T Consensus 289 -~-~~~~~~~~~~~ 300 (300)
T TIGR03866 289 -V-GRLPWGVVVRP 300 (300)
T ss_pred -c-ccccceeEeCC
Confidence 2 24446777654
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=194.04 Aligned_cols=269 Identities=13% Similarity=0.142 Sum_probs=205.1
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCc
Q 000709 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHR-QVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1339)
Q Consensus 8 ~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg-~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~ 86 (1339)
.+|+..-+.|+|.|+|.+|.+++.||.|++|+..+- +.-.++. .+...+.++......|++++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~s~~f~~~s--------------- 73 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACYSNHFLTGS--------------- 73 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeecccceEEee---------------
Confidence 589999999999999999999999999999997654 2212222 13344555555555666665
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCC
Q 000709 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNK 165 (1339)
Q Consensus 87 V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~ 165 (1339)
.+++|.++.+..++. .......+-++++++|+.+|+ +++.|++|-.|.+ +..... ......+|..
T Consensus 74 ------~~~tv~~y~fps~~~-----~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s--~~~~lrgh~a 139 (933)
T KOG1274|consen 74 ------EQNTVLRYKFPSGEE-----DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS--QEKVLRGHDA 139 (933)
T ss_pred ------ccceEEEeeCCCCCc-----cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc--hheeecccCC
Confidence 578889988877754 234444567899999999998 9999999999955 666543 3445789999
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC------C-CCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG------H-KGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~g------H-~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
+|.++.| +|.+.+|++.+.||.|++||+.++.+.+++..- - ...+..++ ++|++..|+..+.|+.
T Consensus 140 pVl~l~~-----~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~a---W~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 140 PVLQLSY-----DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLA---WHPKGGTLAVPPVDNT 211 (933)
T ss_pred ceeeeeE-----cCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeee---ecCCCCeEEeeccCCe
Confidence 9999999 678999999999999999999998777666411 1 22334444 6899888888899999
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
|++|+..++.....+ ....|...+.++.|+| .|.||++++.||.|.|||..+... ......|+
T Consensus 212 Vkvy~r~~we~~f~L----r~~~~ss~~~~~~wsP---nG~YiAAs~~~g~I~vWnv~t~~~----------~~~~~~Vc 274 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKL----RDKLSSSKFSDLQWSP---NGKYIAASTLDGQILVWNVDTHER----------HEFKRAVC 274 (933)
T ss_pred EEEEccCCceeheee----cccccccceEEEEEcC---CCcEEeeeccCCcEEEEecccchh----------ccccceeE
Confidence 999999988765442 2244555599999999 799999999999999999987221 22245789
Q ss_pred EEEeCCCCCEEEE
Q 000709 319 CHPRAPNLDILTC 331 (1339)
Q Consensus 319 svafspdg~iLs~ 331 (1339)
+++|.|+..-++.
T Consensus 275 ~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 275 CEAWKPNANAITL 287 (933)
T ss_pred EEecCCCCCeeEE
Confidence 9999999876654
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=4e-18 Score=203.33 Aligned_cols=197 Identities=16% Similarity=0.226 Sum_probs=156.5
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
|...+.++.|++....+|++|+.|++| .||++..+. ..++......|+.|.|+|. .+.+++++.+.|.+++||
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S--~~t~~~nSESiRDV~fsp~----~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS--KSTFRSNSESIRDVKFSPG----YGNKFASIHDSGYLQLWD 205 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeecccc--cccccccchhhhceeeccC----CCceEEEecCCceEEEee
Confidence 477899999999998999999999999 679987654 3345557789999999763 478999999999999999
Q ss_pred CCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 198 MISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 198 l~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
++.. ++...+. +|.++|.|+. ++|++.+|||||.|++|+|||+.+++... ..++ ....+|.+|.|-| .
T Consensus 206 lRqp~r~~~k~~-AH~GpV~c~n---whPnr~~lATGGRDK~vkiWd~t~~~~~~----~~tI-nTiapv~rVkWRP--~ 274 (839)
T KOG0269|consen 206 LRQPDRCEKKLT-AHNGPVLCLN---WHPNREWLATGGRDKMVKIWDMTDSRAKP----KHTI-NTIAPVGRVKWRP--A 274 (839)
T ss_pred ccCchhHHHHhh-cccCceEEEe---ecCCCceeeecCCCccEEEEeccCCCccc----eeEE-eecceeeeeeecc--C
Confidence 9865 4555555 9999999998 47899999999999999999998765322 1122 2346799999999 3
Q ss_pred CCCEEEEEe--CCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCeE
Q 000709 277 GSPQLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSHI 337 (1339)
Q Consensus 277 dg~~LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--iLs~s~Dg~L 337 (1339)
....|++++ .|-.|+|||++. -+-|...+..|+..++.++|..... +++|+.|++|
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrR-----PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRR-----PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ccchhhhhhccccceEEEEeecc-----ccccceeeeccCccccceeccCCCceeeEeecCccHH
Confidence 556777776 488999999873 2334556789999999999976333 5588888874
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.1e-18 Score=204.12 Aligned_cols=209 Identities=20% Similarity=0.283 Sum_probs=175.0
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
|..+-+|.+....++ ..+.+ |.+.|.++.|+++.. +|++|+.+|+| +||+...+. +..+.+|...+..+.|
T Consensus 49 ~~k~~L~~i~kp~~i----~S~~~-hespIeSl~f~~~E~-LlaagsasgtiK~wDleeAk~--vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 49 DEKVNLWAIGKPNAI----TSLTG-HESPIESLTFDTSER-LLAAGSASGTIKVWDLEEAKI--VRTLTGHLLNITSVDF 120 (825)
T ss_pred ceeeccccccCCchh----heeec-cCCcceeeecCcchh-hhcccccCCceeeeehhhhhh--hhhhhccccCcceeee
Confidence 344445555544333 12233 488899999999886 99999999999 779987653 5567899999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
+|-+.+.++|+.|+.+++||.+...|...+. +|...|.++. |+|+|+++++|+.|.+|++||...|+.+.+
T Consensus 121 -----~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~---lsP~Gr~v~~g~ed~tvki~d~~agk~~~e 191 (825)
T KOG0267|consen 121 -----HPYGEFFASGSTDTDLKIWDIRKKGCSHTYK-SHTRVVDVLR---LSPDGRWVASGGEDNTVKIWDLTAGKLSKE 191 (825)
T ss_pred -----ccceEEeccccccccceehhhhccCceeeec-CCcceeEEEe---ecCCCceeeccCCcceeeeecccccccccc
Confidence 5678999999999999999999888999887 7999999997 899999999999999999999999987766
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEe
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s 332 (1339)
+.+|++.|.++.||| ..-++++||.|++|++||+++.+.+... ......|.+..|+|++..+.+|
T Consensus 192 ------f~~~e~~v~sle~hp---~e~Lla~Gs~d~tv~f~dletfe~I~s~------~~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 192 ------FKSHEGKVQSLEFHP---LEVLLAPGSSDRTVRFWDLETFEVISSG------KPETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ------cccccccccccccCc---hhhhhccCCCCceeeeeccceeEEeecc------CCccCCceeeeecCCceeeecC
Confidence 688999999999999 6778899999999999999988877663 3446789999999999987665
Q ss_pred cC
Q 000709 333 KD 334 (1339)
Q Consensus 333 ~D 334 (1339)
..
T Consensus 257 ~q 258 (825)
T KOG0267|consen 257 EQ 258 (825)
T ss_pred ch
Confidence 44
No 132
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=2.7e-14 Score=166.99 Aligned_cols=278 Identities=16% Similarity=0.205 Sum_probs=206.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
+....| .|+.++|-|||..|+.+ .+..+.|||...|..+.+++ +|.+-++++. .+|..+++|+
T Consensus 8 r~~~~h--ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~----------- 72 (1081)
T KOG1538|consen 8 RDKAEH--CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGS----------- 72 (1081)
T ss_pred hccccc--chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCC-----------
Confidence 334445 89999999999987776 45678999999999999999 7789999887 8999999987
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeecccccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~ 162 (1339)
.|..|.+|.-.-. ..+...|.+.|.|+.|+|-.+ .|++|+-+..-.|...... + ....
T Consensus 73 ----------aDK~VI~W~~klE-------G~LkYSH~D~IQCMsFNP~~h-~LasCsLsdFglWS~~qK~---V-~K~k 130 (1081)
T KOG1538|consen 73 ----------ADKSVIIWTSKLE-------GILKYSHNDAIQCMSFNPITH-QLASCSLSDFGLWSPEQKS---V-SKHK 130 (1081)
T ss_pred ----------CceeEEEeccccc-------ceeeeccCCeeeEeecCchHH-HhhhcchhhccccChhhhh---H-Hhhh
Confidence 5788999986543 334455688999999999886 8999998888888544322 1 1122
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCC--CCEEEEEeCCCcE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSG--EALLVSGGSDGLL 239 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l-~~gH~~~V~sl~wf~~spd--g~~LaSgS~DgtV 239 (1339)
....+.|.+| ..||++++.|-.||+|.+-+-.....++.- .+|.+.+|++++|...+.. ...++......++
T Consensus 131 ss~R~~~CsW-----tnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 131 SSSRIICCSW-----TNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred hheeEEEeee-----cCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 3457888899 789999999999999999875433322222 2467889999996422211 2478888888888
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeE
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1339)
.++.+. |+.+.. -+.-.-...|+.+.+ +|.+++.||.|+.+++|- +.|-.+.+ +......||.
T Consensus 206 SFy~Ls-G~~Igk------~r~L~FdP~CisYf~---NGEy~LiGGsdk~L~~fT-R~GvrLGT------vg~~D~WIWt 268 (1081)
T KOG1538|consen 206 SFYQLS-GKQIGK------DRALNFDPCCISYFT---NGEYILLGGSDKQLSLFT-RDGVRLGT------VGEQDSWIWT 268 (1081)
T ss_pred EEEEec-ceeecc------cccCCCCchhheecc---CCcEEEEccCCCceEEEe-ecCeEEee------ccccceeEEE
Confidence 888886 333321 012223467899998 899999999999999997 44555555 3345668999
Q ss_pred EEeCCCCCEE-EEecCCeE--EEcc
Q 000709 320 HPRAPNLDIL-TCVKDSHI--WAIE 341 (1339)
Q Consensus 320 vafspdg~iL-s~s~Dg~L--WDi~ 341 (1339)
+...|+++.+ .|+.||+| |++-
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhH
Confidence 9999999966 68899985 5554
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.75 E-value=8.6e-17 Score=175.71 Aligned_cols=218 Identities=22% Similarity=0.311 Sum_probs=164.7
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC--CCEEEEEe
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG--EALLVSGG 234 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spd--g~~LaSgS 234 (1339)
+..+..|...|+|++. +++++++||.|-+|+|||++....+..+. .|.+.|+++. |.+. ...|++|+
T Consensus 36 lF~~~aH~~sitavAV-------s~~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~---F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV-------SGPYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALK---FYPPLSKSHLLSGS 104 (362)
T ss_pred cccccccccceeEEEe-------cceeEeccCCCCcEEEEeccchhhhccee-ccccceEEEE---ecCCcchhheeeec
Confidence 4456788999999999 79999999999999999999988888887 8999999998 3333 34899999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
.||.|.+|+.....+++. +++|.+.|+.+++|| .+++-++.+.|+.+++||+-.|+.-.... + .|
T Consensus 105 dDG~i~iw~~~~W~~~~s------lK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~----L-~~- 169 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWELLKS------LKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN----L-KN- 169 (362)
T ss_pred CCCcEEEEEcCCeEEeee------ecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec----c-CC-
Confidence 999999999988766554 799999999999999 78999999999999999998887443321 1 11
Q ss_pred CceeEEEeCCCCC-EEEEecCCe-EEEccCCccc-cc------------------------ccCccccCCCCCCeEEccC
Q 000709 315 VASWCHPRAPNLD-ILTCVKDSH-IWAIEHPTYS-AL------------------------TRPLCELSSLVPPQVLAHH 367 (1339)
Q Consensus 315 ~~V~svafspdg~-iLs~s~Dg~-LWDi~t~~~~-~~------------------------~~~l~~~~~~~~~~tl~~~ 367 (1339)
.-..+.|+|.|. ++.++.++- +|.+.+.... .. ...+.+-....+...+..|
T Consensus 170 -~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 170 -KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred -cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecc
Confidence 122377888777 444555553 6655432110 00 0112223335667778888
Q ss_pred CcccEEEEEEe-cCCCcEEEEEECCCeEEEEecCCCC
Q 000709 368 KKLRVYCMVAH-SLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 368 ~~~~I~~la~s-p~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
.. +|.++.+- ...+.+|++.+.||.| ++||++..
T Consensus 249 ~~-RVK~i~~~~~~~~~~lvTaSSDG~I-~vWd~~~~ 283 (362)
T KOG0294|consen 249 EN-RVKDIASYTNPEHEYLVTASSDGFI-KVWDIDME 283 (362)
T ss_pred hh-heeeeEEEecCCceEEEEeccCceE-EEEEcccc
Confidence 88 89999843 3367899999999998 89998853
No 134
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.75 E-value=1.6e-14 Score=168.96 Aligned_cols=246 Identities=16% Similarity=0.201 Sum_probs=182.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+++|+||.+.|+|++|+.||.++|||+.|..|.||+-. .-..++..|.+.|.+++ |-.+.|++++..
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k---lEG~LkYSH~D~IQCMsFNP~~h~LasCsLs-------- 114 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK---LEGILKYSHNDAIQCMSFNPITHQLASCSLS-------- 114 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEeccc---ccceeeeccCCeeeEeecCchHHHhhhcchh--------
Confidence 68999999999999999999999999999999999854 33445557788888887 777888887532
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCce-eecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG-RDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~-~~v~~~ 160 (1339)
..-+|........ .......+.+++|..||+ +++.|-.+|+|.+.-.+++. ..+...
T Consensus 115 --------------dFglWS~~qK~V~-------K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 115 --------------DFGLWSPEQKSVS-------KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERP 172 (1081)
T ss_pred --------------hccccChhhhhHH-------hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCC
Confidence 2335654443221 122245688999999998 99999999999774333332 233334
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
.+.+.+|.+++|.|.+.-.....+++.....++.+|.+. |+.+..-. .-.-.-.|+. +-++|.+++.|+.|+.++
T Consensus 173 gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r-~L~FdP~Cis---Yf~NGEy~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 173 GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDR-ALNFDPCCIS---YFTNGEYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccc-cCCCCchhhe---eccCCcEEEEccCCCceE
Confidence 556889999999876433334678888888888888876 45544322 3334556776 567999999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
+|.-. |-.+.+ +...+.+|+.++.+| ++++++.|+.||+|-.|++-.
T Consensus 248 ~fTR~-GvrLGT------vg~~D~WIWtV~~~P---NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 248 LFTRD-GVRLGT------VGEQDSWIWTVQAKP---NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred EEeec-CeEEee------ccccceeEEEEEEcc---CCceEEEEEccCeeehhhhHH
Confidence 99644 433332 344678999999999 899999999999999998753
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=182.38 Aligned_cols=270 Identities=16% Similarity=0.208 Sum_probs=197.9
Q ss_pred EeCC-CeEEEEECCCCcEEEEEeccCccceEEec-cccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCcc
Q 000709 29 ADAS-DHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNR 106 (1339)
Q Consensus 29 gs~D-GtIrIWDl~tg~~l~~~~~~~~~~i~~vs-~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~ 106 (1339)
++.| .++.+||+++|..+.+++.+....-..+. -.+.+++++ .+....+.+|.+....
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsa--------------------q~~rp~l~vw~i~k~~ 72 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSA--------------------QLKRPLLHVWEILKKD 72 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeee--------------------cccCccccccccCchh
Confidence 3444 56999999999999999854211111111 222333333 2345578889887664
Q ss_pred ccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc-EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEE
Q 000709 107 AAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA 185 (1339)
Q Consensus 107 ~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg-~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~La 185 (1339)
..+ ...-..+.|.++.-+|+|. +|+.|...+ +..|.+.+|.. +..+..|-..|+|+.| +.||.+|+
T Consensus 73 ~~~-----q~~v~Pg~v~al~s~n~G~-~l~ag~i~g~lYlWelssG~L--L~v~~aHYQ~ITcL~f-----s~dgs~ii 139 (476)
T KOG0646|consen 73 QVV-----QYIVLPGPVHALASSNLGY-FLLAGTISGNLYLWELSSGIL--LNVLSAHYQSITCLKF-----SDDGSHII 139 (476)
T ss_pred hhh-----hhcccccceeeeecCCCce-EEEeecccCcEEEEEeccccH--HHHHHhhccceeEEEE-----eCCCcEEE
Confidence 432 1122255699999999996 777775555 55889999976 4456889999999999 88999999
Q ss_pred EEECCCcEEEEECC---------CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccc
Q 000709 186 FGSSDGVIRVLSMI---------SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPK 256 (1339)
Q Consensus 186 sGs~DgtIrIWDl~---------t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~ 256 (1339)
+|+.||.|.+|++. +-+....+. .|+-+|+.+. +.+.+...+|+|+|.|+++|+||+..+..+..+
T Consensus 140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~-~HtlsITDl~-ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti--- 214 (476)
T KOG0646|consen 140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFS-DHTLSITDLQ-IGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI--- 214 (476)
T ss_pred ecCCCccEEEEEEEeecccccCCCccceeeec-cCcceeEEEE-ecCCCccceEEEecCCceEEEEEeccceeeEEE---
Confidence 99999999999874 235566776 8999999996 334445679999999999999999999876552
Q ss_pred ccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE------E--e--cCCCcccccCC--ceeEEEeCC
Q 000709 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR------R--I--KPVPKLACHSV--ASWCHPRAP 324 (1339)
Q Consensus 257 ~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~------~--~--~~~~~l~~H~~--~V~svafsp 324 (1339)
.....+.+++.+| ....+..|+.+|.|.+.++......+ . + .....+.||.+ +|+|++++-
T Consensus 215 ----~fp~si~av~lDp---ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~ 287 (476)
T KOG0646|consen 215 ----TFPSSIKAVALDP---AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST 287 (476)
T ss_pred ----ecCCcceeEEEcc---cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec
Confidence 2345689999999 68899999999999998876433110 0 0 11234689988 999999999
Q ss_pred CCCEE-EEecCCe--EEEccCC
Q 000709 325 NLDIL-TCVKDSH--IWAIEHP 343 (1339)
Q Consensus 325 dg~iL-s~s~Dg~--LWDi~t~ 343 (1339)
||.+| +|+.||. |||+...
T Consensus 288 DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 288 DGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred CccEEEeeCCCCCEEEEecchH
Confidence 99965 8889997 8999864
No 136
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=8.6e-16 Score=167.46 Aligned_cols=270 Identities=13% Similarity=0.154 Sum_probs=195.1
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEec--CCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV--TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~--t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrI 195 (1339)
|.+-|.++.|.+.|+ .+++|+.|+.+ +||.. ++...+....+.|.+.|..|.|.+ ..-|+.++++|.|+++.|
T Consensus 12 h~DlihdVs~D~~GR-RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh---PEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGR-RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH---PEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CcceeeeeeecccCc-eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC---ccccceEEEEecCCceee
Confidence 367799999999998 88999999999 66743 455556667789999999999975 345899999999999999
Q ss_pred EECC---------CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc------
Q 000709 196 LSMI---------SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK------ 260 (1339)
Q Consensus 196 WDl~---------t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~------ 260 (1339)
|.-. .+....++. .....|+.++ |....-|-.+++++.||.+|||+......+..|....++.
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~-FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVK-FAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeecccccccccceeEEEEEee-cCCcceeEEE-ecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 9752 233344554 6778999998 3344567899999999999999987654444443333333
Q ss_pred -ccccceEEEEeeccCCCCCEEEEEeCC-----CcEEEEECCCCe-eEEEecCCCcccccCCceeEEEeCCC-CC---EE
Q 000709 261 -AHDGGVVAVELSRVMGGSPQLITIGAD-----KTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPN-LD---IL 329 (1339)
Q Consensus 261 -gH~~~V~svafsp~~~dg~~LaSgs~D-----g~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafspd-g~---iL 329 (1339)
.|.....|+.|+|..-..++|+.|+++ +.++||...... .... +.++.+|...|+.++|.|+ |+ +|
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k---va~L~d~~dpI~di~wAPn~Gr~y~~l 242 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK---VAELPDHTDPIRDISWAPNIGRSYHLL 242 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee---ehhcCCCCCcceeeeeccccCCceeeE
Confidence 566778999999855556789998876 589999876543 3333 4567899999999999998 44 44
Q ss_pred -EEecCC-eEEEccCCcccccc-cCcc--cc---CCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 330 -TCVKDS-HIWAIEHPTYSALT-RPLC--EL---SSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 330 -s~s~Dg-~LWDi~t~~~~~~~-~~l~--~~---~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
+++.|| +||.+..... ... .... .. .....+..+..|+. .||.+.|+- .+..|++.++||.| |+|...
T Consensus 243 AvA~kDgv~I~~v~~~~s-~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNm-tGtiLsStGdDG~V-RLWkan 318 (361)
T KOG2445|consen 243 AVATKDGVRIFKVKVARS-AIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNM-TGTILSSTGDDGCV-RLWKAN 318 (361)
T ss_pred EEeecCcEEEEEEeeccc-hhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEee-eeeEEeecCCCcee-eehhhh
Confidence 678997 5899874211 000 0000 00 01112334566665 899999998 58889999999997 999643
No 137
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.73 E-value=3.4e-16 Score=169.12 Aligned_cols=309 Identities=17% Similarity=0.220 Sum_probs=206.6
Q ss_pred EecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 6 AFRPTNDKIVKIQLHPT-HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPd-g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
.-+.|.+.|+++...+. |+|+++|+.||.|.|||++.......- .+..
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s----------------~li~--------------- 86 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS----------------GLIA--------------- 86 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc----------------ccee---------------
Confidence 44679999999999985 789999999999999999853211000 0000
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
..+ |+. .......|.-.|.++.|-|-..-++.+++.|+.+ +||.++.+.... ..-
T Consensus 87 ----------k~~---------c~v--~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~---F~m 142 (397)
T KOG4283|consen 87 ----------KHK---------CIV--AKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVD---FKM 142 (397)
T ss_pred ----------hee---------eec--cccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEE---eec
Confidence 000 100 0111222355678888888655599999999999 789988754332 223
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
.+.|+.-+++|- +....+|++|..|-.|++.|+.+|.+...+. ||.+.|.++.|. +...-.|++|+.||.||+||
T Consensus 143 e~~VYshamSp~--a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Ws--p~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 143 EGKVYSHAMSPM--AMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWS--PSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred CceeehhhcChh--hhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEec--cCceeEEEecCCCceEEEEE
Confidence 467777788653 2235689999999999999999999999997 999999999973 45566789999999999999
Q ss_pred CCCC-Cccceec-------c-cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE-EecCCCccccc
Q 000709 244 ADHG-QDSRELV-------P-KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RIKPVPKLACH 313 (1339)
Q Consensus 244 l~tg-~~~~~~~-------~-~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~-~~~~~~~l~~H 313 (1339)
++.. .|...+. + ...-..|.+.|++++|.. ++.++++++.|..+++|+..+|+... .+.+ ..|
T Consensus 218 iRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS---d~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~----~~~ 290 (397)
T KOG4283|consen 218 IRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS---DARYLASCGTDDRIRVWNMESGRNTLREFGP----IIH 290 (397)
T ss_pred eecccceeEEeecccCccCccccccccccceeeeeeecc---cchhhhhccCccceEEeecccCccccccccc----ccc
Confidence 9865 2322111 1 112357889999999998 89999999999999999999887422 1111 112
Q ss_pred CCceeEEEe---CCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 314 SVASWCHPR---APNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 314 ~~~V~svaf---spdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
.... ...+ +-+.. ++---.++. ++.+-.+ ..+..+..|.+ +|.|.++.| +=....+
T Consensus 291 n~~~-~~~~~~~~~~s~vfv~~p~~~~lall~~~sg---------------s~ir~l~~h~k-~i~c~~~~~-~fq~~~t 352 (397)
T KOG4283|consen 291 NQTT-SFAVHIQSMDSDVFVLFPNDGSLALLNLLEG---------------SFVRRLSTHLK-RINCAAYRP-DFEQCFT 352 (397)
T ss_pred cccc-cceEEEeecccceEEEEecCCeEEEEEccCc---------------eEEEeeecccc-eeeEEeecC-chhhhhc
Confidence 2111 1111 11111 221122233 3333322 22445666755 899999998 4556899
Q ss_pred EECCCeEEEEecC
Q 000709 388 GTNVGVIISEFDP 400 (1339)
Q Consensus 388 Gs~DG~IlriWd~ 400 (1339)
|..|+.| ..|-+
T Consensus 353 g~~d~ni-~~w~p 364 (397)
T KOG4283|consen 353 GDMNGNI-YMWSP 364 (397)
T ss_pred cccCCcc-ccccc
Confidence 9999998 57754
No 138
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.73 E-value=2.7e-15 Score=171.79 Aligned_cols=353 Identities=16% Similarity=0.192 Sum_probs=240.0
Q ss_pred eEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCC----
Q 000709 4 LKAFRPTN-DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKG---- 76 (1339)
Q Consensus 4 l~~L~gHs-~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~g---- 76 (1339)
.-.|++|. .-|.|++|.++|+ ++||+.+|.|.||+..+.+..+... .|..++++++ .+|.+|. |+.|...
T Consensus 238 ~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd 314 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWD 314 (626)
T ss_pred eeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEecc
Confidence 34455555 4599999999986 6699999999999998888888877 7788999888 6666655 6655421
Q ss_pred ------Ccccccc-CCceEEEEEcCCeEEEEEcCCccccc-----cccccccccCCCCeeeeeeCCCCCeEEEEEecCcE
Q 000709 77 ------KPTEAMR-GGSVKQVNFYDDDVRFWQLWRNRAAA-----AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKA 144 (1339)
Q Consensus 77 ------k~~~~l~-~g~V~sVaF~Dg~IrlWDl~~~~~l~-----~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~ 144 (1339)
+.+++-. .|+|+.|+-..+.+.+=- ..+..+. .......+| ....+.++.+|+.. .+++++.|+.
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGT-trN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~-q~~T~gqdk~ 391 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGT-TRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKN-QLLTCGQDKH 391 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEee-ccceEEEeeecCCceEEEEec-ccceeeEEcCCChh-heeeccCcce
Confidence 1111111 156666655333322211 1111111 111223344 56889999999987 8899999999
Q ss_pred E-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeee
Q 000709 145 I-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMA 223 (1339)
Q Consensus 145 I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~ 223 (1339)
+ .|+ ..+ +...+.-.++..|+.|| |.| .++.|+..|...+.|.++...+..-. . +.++++++ +
T Consensus 392 v~lW~--~~k---~~wt~~~~d~~~~~~fh-----psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d-~~~ls~v~---y 455 (626)
T KOG2106|consen 392 VRLWN--DHK---LEWTKIIEDPAECADFH-----PSG-VVAVGTATGRWFVLDTETQDLVTIHT-D-NEQLSVVR---Y 455 (626)
T ss_pred EEEcc--CCc---eeEEEEecCceeEeecc-----Ccc-eEEEeeccceEEEEecccceeEEEEe-c-CCceEEEE---E
Confidence 8 556 211 22234456789999995 567 99999999999999999866655544 3 88999997 8
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 000709 224 SSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1339)
Q Consensus 224 spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1339)
+|+|.+|+.|+.|+.|.+|.+..+...... . -+.|...|+.+.|++ |+++|.+-+.|-.|..|.....+....
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r--~--~k~~gs~ithLDwS~---Ds~~~~~~S~d~eiLyW~~~~~~~~ts 528 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSR--V--GKCSGSPITHLDWSS---DSQFLVSNSGDYEILYWKPSECKQITS 528 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEE--e--eeecCceeEEeeecC---CCceEEeccCceEEEEEccccCcccce
Confidence 999999999999999999999876543221 1 123447899999999 899999999999999995544333222
Q ss_pred ecCCCc------------ccccCCceeEEEeCCCCCEEEEecC-Ce--EEEccCCcccccccCccccCCCCCCeEEccCC
Q 000709 304 IKPVPK------------LACHSVASWCHPRAPNLDILTCVKD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHK 368 (1339)
Q Consensus 304 ~~~~~~------------l~~H~~~V~svafspdg~iLs~s~D-g~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~ 368 (1339)
.+.+.. ...|...+..++.+.+.++++++.| |+ |+...-. +...+...+.+|+
T Consensus 529 ~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~------------s~rA~~he~~ghs 596 (626)
T KOG2106|consen 529 VKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCS------------SPRAPSHEYGGHS 596 (626)
T ss_pred ecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccC------------CCcccceeecccc
Confidence 221111 1345556667777777788877766 44 4433210 1123345667787
Q ss_pred cccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 369 KLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 369 ~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
. .|.+++|.-.+..++.+| .|..| ..|++
T Consensus 597 ~-~vt~V~Fl~~d~~li~tg-~D~Si-~qW~l 625 (626)
T KOG2106|consen 597 S-HVTNVAFLCKDSHLISTG-KDTSI-MQWRL 625 (626)
T ss_pred c-eeEEEEEeeCCceEEecC-CCceE-EEEEe
Confidence 7 899999999777767777 88887 58864
No 139
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.73 E-value=8.3e-17 Score=184.42 Aligned_cols=249 Identities=14% Similarity=0.162 Sum_probs=176.5
Q ss_pred ccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeec--c-ccccCCCCeEEEEEeeccccCCCCEEEEEE
Q 000709 113 PTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI--P-KQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1339)
Q Consensus 113 ~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v--~-~~~~h~~~V~~vaf~P~s~Spdg~~LasGs 188 (1339)
.....|++..|.++++.|.|- .|++|+-|..+ .||...+..... . ......+.|+++.| ++.|..|++.+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~Ga-R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y-----s~Tg~~iLvvs 233 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGA-RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY-----SVTGDQILVVS 233 (641)
T ss_pred eEeccCCceEEEEeeecCCCc-eeeeccccceEEEEecccccccchhhhccCcccccccceeee-----cCCCCeEEEEe
Confidence 345567788999999999997 89999999999 678875543211 1 12234678999999 78899999888
Q ss_pred CCCcEEEEECCCCeEEEEE-----------ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce-eccc
Q 000709 189 SDGVIRVLSMISWKLVRRY-----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE-LVPK 256 (1339)
Q Consensus 189 ~DgtIrIWDl~t~~~i~~l-----------~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~-~~~~ 256 (1339)
.....+|+|-...+..... ..||...++|.+| .+.+...|++++.||++|+||+...+.... +++
T Consensus 234 g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~w--hP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~- 310 (641)
T KOG0772|consen 234 GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCW--HPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKT- 310 (641)
T ss_pred cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccc--ccCcccceEEecCCCcEEEEecCCchhheeEEee-
Confidence 8889999996543333222 2489999999997 355567899999999999999987553222 211
Q ss_pred ccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC--ceeEEEeCCCCCEE-EEec
Q 000709 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV--ASWCHPRAPNLDIL-TCVK 333 (1339)
Q Consensus 257 ~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~--~V~svafspdg~iL-s~s~ 333 (1339)
....+..-.++.++|+| ++.+|++|+.||+|.+|+..+...--.+ ..-..|.. .|+|+.||+||++| +-|.
T Consensus 311 k~~~g~Rv~~tsC~~nr---dg~~iAagc~DGSIQ~W~~~~~~v~p~~---~vk~AH~~g~~Itsi~FS~dg~~LlSRg~ 384 (641)
T KOG0772|consen 311 KPAGGKRVPVTSCAWNR---DGKLIAAGCLDGSIQIWDKGSRTVRPVM---KVKDAHLPGQDITSISFSYDGNYLLSRGF 384 (641)
T ss_pred ccCCCcccCceeeecCC---CcchhhhcccCCceeeeecCCcccccce---EeeeccCCCCceeEEEeccccchhhhccC
Confidence 11234455789999999 8999999999999999998643311111 01256766 89999999999965 7788
Q ss_pred CCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEEC
Q 000709 334 DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1339)
Q Consensus 334 Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~ 390 (1339)
|++ |||++.... ++....+. .....-+.++||| +..+|++|+.
T Consensus 385 D~tLKvWDLrq~kk-----pL~~~tgL--------~t~~~~tdc~FSP-d~kli~TGtS 429 (641)
T KOG0772|consen 385 DDTLKVWDLRQFKK-----PLNVRTGL--------PTPFPGTDCCFSP-DDKLILTGTS 429 (641)
T ss_pred CCceeeeecccccc-----chhhhcCC--------CccCCCCccccCC-CceEEEeccc
Confidence 885 899996421 11111111 1112445689999 5777888864
No 140
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.72 E-value=1.2e-16 Score=177.78 Aligned_cols=223 Identities=21% Similarity=0.264 Sum_probs=160.3
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i--~~l~~gH~~~V~sl~wf~~spdg~~LaSg 233 (1339)
.+.++..|...=+.++|+|. ..| .+++|..-+.|++|...++... ..-..+|+..|-.++| .+.....|+||
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~---~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqW--SptE~~vfaSc 276 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPI---KTG-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQW--SPTEDGVFASC 276 (440)
T ss_pred ceEEecccCccceeeecccc---ccc-ccccCccccceEeeeeccCceeecCccccccccchhhhcc--CCccCceEEee
Confidence 34456778788889999551 233 4788888889999999876443 2222389999999996 24456799999
Q ss_pred eCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccccc
Q 000709 234 GSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1339)
Q Consensus 234 S~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1339)
|.||+|+|||++.+..... ...+.|...|+-+.|+. ...+|++|++||+++|||++..+.- .++..+..|
T Consensus 277 S~DgsIrIWDiRs~~~~~~----~~~kAh~sDVNVISWnr---~~~lLasG~DdGt~~iwDLR~~~~~---~pVA~fk~H 346 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAA----VSTKAHNSDVNVISWNR---REPLLASGGDDGTLSIWDLRQFKSG---QPVATFKYH 346 (440)
T ss_pred ecCceEEEEEecCCCccce----eEeeccCCceeeEEccC---CcceeeecCCCceEEEEEhhhccCC---CcceeEEec
Confidence 9999999999999843221 12388999999999998 5669999999999999999865432 344557899
Q ss_pred CCceeEEEeCCCCC--EEEEecCCe--EEEccCCcc--cccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 314 SVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTY--SALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 314 ~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~--~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
...|+++.|+|... ++++|.|.. |||+....- .........+....+...|-..+...+..+.||++-+-++++
T Consensus 347 k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 347 KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 99999999999754 557788875 899974311 000111112222223233333344578899999998888999
Q ss_pred EECCCeE
Q 000709 388 GTNVGVI 394 (1339)
Q Consensus 388 Gs~DG~I 394 (1339)
.+.||.-
T Consensus 427 Ta~dGfn 433 (440)
T KOG0302|consen 427 TAIDGFN 433 (440)
T ss_pred eccccee
Confidence 9999983
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=1.1e-17 Score=197.96 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=197.5
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
...+++||.....+ |...+.++..-..++ .+++|+.+..+ .|..... ..+..+.+|...|.|+.|
T Consensus 13 ~t~Lr~~~~~~~~~-----------hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp--~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 13 ATKLRVWDTREFVA-----------HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKP--NAITSLTGHESPIESLTF 78 (825)
T ss_pred eeccccccchhhhh-----------hhhhhceeeeeccce-eeccCCCceeeccccccCC--chhheeeccCCcceeeec
Confidence 34566777765433 255566666655565 88999999888 6644433 334457899999999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
+.+..+|+.|+.+|+|++||++..+.++++. ||...+.++. |+|-+.++++|+.|+.+++||++...|.+.
T Consensus 79 -----~~~E~LlaagsasgtiK~wDleeAk~vrtLt-gh~~~~~sv~---f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~ 149 (825)
T KOG0267|consen 79 -----DTSERLLAAGSASGTIKVWDLEEAKIVRTLT-GHLLNITSVD---FHPYGEFFASGSTDTDLKIWDIRKKGCSHT 149 (825)
T ss_pred -----CcchhhhcccccCCceeeeehhhhhhhhhhh-ccccCcceee---eccceEEeccccccccceehhhhccCceee
Confidence 6788999999999999999999999999998 9999999997 799999999999999999999997776654
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EE
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TC 331 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~ 331 (1339)
+.+|...|..+.|+| +|.++++|++|.+++|||...|+.+.. +.+|...+.++.|+|...++ +|
T Consensus 150 ------~~s~~~vv~~l~lsP---~Gr~v~~g~ed~tvki~d~~agk~~~e------f~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 150 ------YKSHTRVVDVLRLSP---DGRWVASGGEDNTVKIWDLTAGKLSKE------FKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred ------ecCCcceeEEEeecC---CCceeeccCCcceeeeecccccccccc------cccccccccccccCchhhhhccC
Confidence 688999999999999 899999999999999999999998777 47899999999999988777 57
Q ss_pred ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCe
Q 000709 332 VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1339)
Q Consensus 332 s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~ 393 (1339)
|.|.+ +||+.+-.. +........ .|.|+.|+| ++..+.+|..+..
T Consensus 215 s~d~tv~f~dletfe~---------------I~s~~~~~~-~v~~~~fn~-~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEV---------------ISSGKPETD-GVRSLAFNP-DGKIVLSGEQISL 261 (825)
T ss_pred CCCceeeeeccceeEE---------------eeccCCccC-CceeeeecC-CceeeecCchhhh
Confidence 88886 899985421 111122223 799999999 5666888876655
No 142
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.3e-15 Score=163.47 Aligned_cols=245 Identities=15% Similarity=0.266 Sum_probs=188.0
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADA--SDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKP 78 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg~~LaSgs~--DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~ 78 (1339)
+++++..+.-.|..+.|......++.++. |.+||.-++.+++.++.|. +|...|..++ |.+..+.+++
T Consensus 48 ~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S------- 119 (311)
T KOG1446|consen 48 QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSS------- 119 (311)
T ss_pred eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecc-------
Confidence 46778888888999999877776666665 8999999999999999998 6677777665 7778888876
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeec
Q 000709 79 TEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDI 157 (1339)
Q Consensus 79 ~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v 157 (1339)
.|++||+||++..+|.. .+. ...-..++|.|+|- +++++.....|.+ |++.......
T Consensus 120 --------------~D~tvrLWDlR~~~cqg----~l~---~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF 177 (311)
T KOG1446|consen 120 --------------LDKTVRLWDLRVKKCQG----LLN---LSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPF 177 (311)
T ss_pred --------------cCCeEEeeEecCCCCce----EEe---cCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCc
Confidence 68999999999877752 111 11224578999996 8888888777755 8876532222
Q ss_pred ccc---ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC--eeEEEEeeeCCCCCEEEE
Q 000709 158 PKQ---ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS--ISCLMTFMASSGEALLVS 232 (1339)
Q Consensus 158 ~~~---~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~--V~sl~wf~~spdg~~LaS 232 (1339)
..+ .......+.|.| |+||++++.++..+.+++.|.-+|....++. ++... +. +.. .|.|+++++++
T Consensus 178 ~tf~i~~~~~~ew~~l~F-----S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-~~~~~~~~~-~~a-~ftPds~Fvl~ 249 (311)
T KOG1446|consen 178 TTFSITDNDEAEWTDLEF-----SPDGKSILLSTNASFIYLLDAFDGTVKSTFS-GYPNAGNLP-LSA-TFTPDSKFVLS 249 (311)
T ss_pred eeEccCCCCccceeeeEE-----cCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-eccCCCCcc-eeE-EECCCCcEEEE
Confidence 222 234668889999 8999999999999999999999999888886 54432 22 221 38999999999
Q ss_pred EeCCCcEEEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 233 GGSDGLLILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 233 gS~DgtVrVWDl~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
|+.||+|.+|+++++..+.. +.+ |.+.+.++.|+| ++..-.+.+..+.+|=..
T Consensus 250 gs~dg~i~vw~~~tg~~v~~------~~~~~~~~~~~~~fnP-----~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 250 GSDDGTIHVWNLETGKKVAV------LRGPNGGPVSCVRFNP-----RYAMFVSASSNLVFWLPD 303 (311)
T ss_pred ecCCCcEEEEEcCCCcEeeE------ecCCCCCCccccccCC-----ceeeeeecCceEEEEecc
Confidence 99999999999999987665 345 788899999999 344455566788888654
No 143
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=2.9e-15 Score=163.95 Aligned_cols=287 Identities=17% Similarity=0.206 Sum_probs=193.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEE-
Q 000709 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNF- 92 (1339)
Q Consensus 14 V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF- 92 (1339)
...+.|+|||..|++-+.|..+++|++-..-.-. . .+...... ....++...++.|+..+|
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~--~---~~~~~~~~-------------~~~~~r~~eg~tvydy~wY 113 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK--K---ADGPLNFS-------------KHLSYRYQEGETVYDYCWY 113 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhccc--C---CCCccccc-------------cceeEEeccCCEEEEEEee
Confidence 5678999999999999999999999985210000 0 00000000 000011111122222222
Q ss_pred -----------------cCCeEEEEEcCCccccccccccccccC--CCCeeeeeeCCCCCeEEEEEecCcEEEEEe-cCC
Q 000709 93 -----------------YDDDVRFWQLWRNRAAAAEAPTAVSNV--TSGFASPPPSTKGRHFLVICCVNKAIFLDL-VTM 152 (1339)
Q Consensus 93 -----------------~Dg~IrlWDl~~~~~l~~~~~~~~~~~--~~~V~slafspdg~~lLasgs~dg~I~wD~-~t~ 152 (1339)
.+.-|++||..+++..... ....|. -....+++|+|||. .|.+|....+-++|. +.+
T Consensus 114 s~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy--~~ydh~de~taAhsL~Fs~DGe-qlfaGykrcirvFdt~RpG 190 (406)
T KOG2919|consen 114 SRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASY--RAYDHQDEYTAAHSLQFSPDGE-QLFAGYKRCIRVFDTSRPG 190 (406)
T ss_pred eccccCCCccceeeeccccCceeeeeccccccccch--hhhhhHHhhhhheeEEecCCCC-eEeecccceEEEeeccCCC
Confidence 5788999999998764211 111221 12356899999998 666666555556687 555
Q ss_pred ceeeccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC
Q 000709 153 RGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1339)
Q Consensus 153 ~~~~v~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg 227 (1339)
+...+.....+ .+-|.|++|+|. +...++.|+....+-||....+.++..+- +|.+.|+.++ +.++|
T Consensus 191 r~c~vy~t~~~~k~gq~giisc~a~sP~----~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~---~~edG 262 (406)
T KOG2919|consen 191 RDCPVYTTVTKGKFGQKGIISCFAFSPM----DSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQ---WCEDG 262 (406)
T ss_pred CCCcchhhhhcccccccceeeeeeccCC----CCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEE---eccCc
Confidence 43222222223 667899999652 45689999999999999988888888886 9999999998 57899
Q ss_pred CEEEEEeC-CCcEEEEeCCCCCccceeccccccccccc-ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC-CeeEEEe
Q 000709 228 ALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG-GVVAVELSRVMGGSPQLITIGADKTLAIWDTVS-FKELRRI 304 (1339)
Q Consensus 228 ~~LaSgS~-DgtVrVWDl~tg~~~~~~~~~~~l~gH~~-~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t-~~~l~~~ 304 (1339)
+.|++|+. |-.|..||++.... +.+.|..|.+ .=..|-|.-. .++++|++|+.||.|++||+.+ +..+..
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~-----pv~~L~rhv~~TNQRI~FDld-~~~~~LasG~tdG~V~vwdlk~~gn~~sv- 335 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRD-----PVYALERHVGDTNQRILFDLD-PKGEILASGDTDGSVRVWDLKDLGNEVSV- 335 (406)
T ss_pred CeecccccCCCeEEEEeehhccc-----hhhhhhhhccCccceEEEecC-CCCceeeccCCCccEEEEecCCCCCcccc-
Confidence 99999885 77899999987542 3445666655 2234444421 2789999999999999999987 554443
Q ss_pred cCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEcc
Q 000709 305 KPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIE 341 (1339)
Q Consensus 305 ~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~ 341 (1339)
+..|...+..++++|--.+++.+.-.+++-..
T Consensus 336 -----~~~~sd~vNgvslnP~mpilatssGqr~f~~~ 367 (406)
T KOG2919|consen 336 -----TGNYSDTVNGVSLNPIMPILATSSGQRIFKYP 367 (406)
T ss_pred -----cccccccccceecCcccceeeeccCceeecCC
Confidence 46788889999999998888777777777554
No 144
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.69 E-value=2.8e-16 Score=174.13 Aligned_cols=244 Identities=13% Similarity=0.176 Sum_probs=178.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+++|+.|.+-|+.|+++. ..++++++|.+|+.|.++. ..++++.+. ....-++ ..+..+++
T Consensus 102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~--s~~~gIdh~~~~~~FaT------------ 164 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK--SVYLGIDHHRKNSVFAT------------ 164 (433)
T ss_pred hheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc--ccccccccccccccccc------------
Confidence 678999999999999997 6788999999999999874 455555421 1111111 11222232
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCCceeecccc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~~~~~v~~~ 160 (1339)
.+..|.|||......+. .+.-. ...|.++.|+|....+|++|..|+.|+ +|.++......
T Consensus 165 -----------cGe~i~IWD~~R~~Pv~----smswG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~K--- 225 (433)
T KOG0268|consen 165 -----------CGEQIDIWDEQRDNPVS----SMSWG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKK--- 225 (433)
T ss_pred -----------cCceeeecccccCCccc----eeecC-CCceeEEecCCCcchheeeeccCCceEEEecccCCccce---
Confidence 24578999998766542 22222 567899999999888899987777774 59987653221
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
....-.-+.|+| +|++-.+++|+.|..++.||++.. ..+.... +|...|++++ |+|.|+-|+|||.|.+|
T Consensus 226 Vi~~mRTN~Isw-----nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVd---fsptG~EfvsgsyDksI 296 (433)
T KOG0268|consen 226 VILTMRTNTICW-----NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVD---FSPTGQEFVSGSYDKSI 296 (433)
T ss_pred eeeeccccceec-----Cccccceeeccccccceehhhhhhcccchhhc-ccceeEEEec---cCCCcchhccccccceE
Confidence 112334567889 677888999999999999999865 3445554 8999999998 89999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1339)
+||..+.+..-..+ ....-..|.|+.|+. |.++++|||+|+.|++|.....+.
T Consensus 297 RIf~~~~~~SRdiY-----htkRMq~V~~Vk~S~---Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 297 RIFPVNHGHSRDIY-----HTKRMQHVFCVKYSM---DSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred EEeecCCCcchhhh-----hHhhhheeeEEEEec---cccEEEecCCCcceeeeecchhhh
Confidence 99999877532211 011123599999999 899999999999999998765543
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.4e-15 Score=164.07 Aligned_cols=264 Identities=15% Similarity=0.241 Sum_probs=180.2
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCce
Q 000709 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 8 ~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
.+|.+-|+|+.|.+.|+.+|||+.|++|+|||.....--.....+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~----------------------------------- 54 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSS----------------------------------- 54 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeee-----------------------------------
Confidence 479999999999999999999999999999997542211111100
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeC-CC-CCeEEEEEecCcEE-EEEe--cCC-----ceeec
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPS-TK-GRHFLVICCVNKAI-FLDL--VTM-----RGRDI 157 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafs-pd-g~~lLasgs~dg~I-~wD~--~t~-----~~~~v 157 (1339)
|. .|++.|..+.|. |. |+ ++++|+.|+++ +|.- .+. +....
T Consensus 55 ------------Wr----------------ah~~Si~rV~WAhPEfGq-vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 55 ------------WR----------------AHDGSIWRVVWAHPEFGQ-VVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred ------------EE----------------ecCCcEEEEEecCccccc-eEEEEecCCceeeeeecccccccccceeEEE
Confidence 00 113445555553 33 55 99999999998 5521 111 12223
Q ss_pred cccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC------CeEEEEE------ecCCCCCeeEEEEeeeCC
Q 000709 158 PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS------WKLVRRY------TGGHKGSISCLMTFMASS 225 (1339)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t------~~~i~~l------~~gH~~~V~sl~wf~~sp 225 (1339)
..+......|+.|.|.| ..-|-.+++++.||.+|||+.-. +.+...+ ...+...-.|+.|...--
T Consensus 106 ttl~DsrssV~DV~FaP---~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~ 182 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAP---KHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRM 182 (361)
T ss_pred EEeecCCcceeEEEecc---hhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccc
Confidence 33455578999999977 35688999999999999998643 3332222 124677888999862222
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCCccceecccccccccccceEEEEeeccCC-CCCEEEEEeCCCcEEEEECCCCe
Q 000709 226 GEALLVSGGSD-----GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-GSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 226 dg~~LaSgS~D-----gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~-dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
...+|+.|+.+ +.++||....+. +.+....++.+|..+|++++|.|..+ .-.+|++++.|| |+||.+....
T Consensus 183 ~~p~iAvgs~e~a~~~~~~~Iye~~e~~--rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~ 259 (361)
T KOG2445|consen 183 HEPLIAVGSDEDAPHLNKVKIYEYNENG--RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVAR 259 (361)
T ss_pred cCceEEEEcccCCccccceEEEEecCCc--ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeecc
Confidence 34678887776 589999876543 12333456789999999999999432 235889999999 9999987311
Q ss_pred ------------eEEE--ecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEcc
Q 000709 300 ------------ELRR--IKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIE 341 (1339)
Q Consensus 300 ------------~l~~--~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~ 341 (1339)
.... ++.+..+..|...||.+.|+-.|.+| +.|.||. +|..+
T Consensus 260 s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 260 SAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred chhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 0111 11123468999999999999999988 5688885 78654
No 146
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.7e-15 Score=161.25 Aligned_cols=225 Identities=15% Similarity=0.218 Sum_probs=156.9
Q ss_pred EEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee---eccccccCCCCeEEEEE
Q 000709 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR---DIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 97 IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~---~v~~~~~h~~~V~~vaf 172 (1339)
++-|+....+..+.........|...|++++|+.||+ .|++++.|+.| +|+++....+ ++ .....-+..+.+.|
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~-R~nve~dhpT~V~F 140 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCI-RQNVEYDHPTRVVF 140 (420)
T ss_pred hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHh-hccccCCCceEEEE
Confidence 5557766665554333333334488999999999998 99999999999 5566543221 11 11223447788999
Q ss_pred eeccccCCCCEEEE-EECCCcEEEEECCC---CeEE--------EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 173 LSRSAVGDVPLVAF-GSSDGVIRVLSMIS---WKLV--------RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 173 ~P~s~Spdg~~Las-Gs~DgtIrIWDl~t---~~~i--------~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
+||.+-++. +-...++++|.+.. |... ..+...|.-.+..+- ...++.+|+|++.|..|.
T Consensus 141 -----apDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG---iA~~~k~imsas~dt~i~ 212 (420)
T KOG2096|consen 141 -----APDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG---IAGNAKYIMSASLDTKIC 212 (420)
T ss_pred -----CCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEe---ecCCceEEEEecCCCcEE
Confidence 677765544 44666899998742 2111 112224555565553 567889999999999999
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC---CCeeEEEecCCCcccccCCce
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV---SFKELRRIKPVPKLACHSVAS 317 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~---t~~~l~~~~~~~~l~~H~~~V 317 (1339)
+|+++ |+.+.. +......-+..+.+| +|++|++++-.-.|++|.+- .|. .+....+..+.||...|
T Consensus 213 lw~lk-Gq~L~~------idtnq~~n~~aavSP---~GRFia~~gFTpDVkVwE~~f~kdG~-fqev~rvf~LkGH~saV 281 (420)
T KOG2096|consen 213 LWDLK-GQLLQS------IDTNQSSNYDAAVSP---DGRFIAVSGFTPDVKVWEPIFTKDGT-FQEVKRVFSLKGHQSAV 281 (420)
T ss_pred EEecC-Cceeee------eccccccccceeeCC---CCcEEEEecCCCCceEEEEEeccCcc-hhhhhhhheeccchhhe
Confidence 99998 776554 233333445678899 89999999999999999873 222 23333445689999999
Q ss_pred eEEEeCCCCC-EEEEecCCe--EEEccC
Q 000709 318 WCHPRAPNLD-ILTCVKDSH--IWAIEH 342 (1339)
Q Consensus 318 ~svafspdg~-iLs~s~Dg~--LWDi~t 342 (1339)
..++|+++.. +++.|.||+ |||++-
T Consensus 282 ~~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 282 LAAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeeeCCCcceeEEEecCCcEEEeeccc
Confidence 9999999977 679999996 999874
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.69 E-value=2.2e-15 Score=171.92 Aligned_cols=290 Identities=14% Similarity=0.088 Sum_probs=203.1
Q ss_pred EeCCCeEEEEECCCCcEEEEEecc-CccceEEeccccc-eeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCcc
Q 000709 29 ADASDHVSVWNWEHRQVIYELKAG-GVDQRRLVGAKLE-KLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNR 106 (1339)
Q Consensus 29 gs~DGtIrIWDl~tg~~l~~~~~~-~~~~i~~vs~d~~-~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~ 106 (1339)
++...++++||...-+...++..+ ...++..++...+ .|++.+.. .|..+++|.-....
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~-------------------gdk~~~~~~K~g~~ 68 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMA-------------------GDKVMRIKEKDGKT 68 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecC-------------------CceeEEEecccCCC
Confidence 334456999999876655555422 1234555553322 24444322 37778888654432
Q ss_pred ccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEE
Q 000709 107 AAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVA 185 (1339)
Q Consensus 107 ~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~La 185 (1339)
..........+....+|.+..++ .++++|+.++++ +||++.. .+....+.|...|+||.| .-...||+
T Consensus 69 ~~Vp~~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~Y-----N~~DeyiA 137 (673)
T KOG4378|consen 69 PEVPRVRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDY-----NNTDEYIA 137 (673)
T ss_pred CccceeeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEe-----cCCcceeE
Confidence 21111122222212234444444 388999999999 7798843 345567889999999999 56788999
Q ss_pred EEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccceeccccccccccc
Q 000709 186 FGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1339)
Q Consensus 186 sGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~-~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~ 264 (1339)
+++..|.|.|..+.++.....|..+....|.-+. +++..+ +|.+++++|.|.+||+........| ...|..
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~---ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsA 209 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR---YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSA 209 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCCCeEEEee---cccccceeeEeeccCCeEEEEeccCCCcccch-----hhhccC
Confidence 9999999999999998887777534445565665 666554 5678999999999999876655443 578999
Q ss_pred ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEcc
Q 000709 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIE 341 (1339)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~ 341 (1339)
+...++|+|. +..+|++.+.|+.|.+||++..+....+ ....+.+.++|+++|.+| +|+..|+ .||++
T Consensus 210 P~~gicfsps--ne~l~vsVG~Dkki~~yD~~s~~s~~~l-------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 210 PCRGICFSPS--NEALLVSVGYDKKINIYDIRSQASTDRL-------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred CcCcceecCC--ccceEEEecccceEEEeeccccccccee-------eecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 9999999994 6789999999999999999976655543 233466789999999987 4567777 48887
Q ss_pred CCcccccccCccccCCCCCCeEEccCCcccEEEEEEecC
Q 000709 342 HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1339)
Q Consensus 342 t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~ 380 (1339)
.. ..|+.++..|.. .|+|++|-+.
T Consensus 281 ~~--------------k~Pv~v~sah~~-sVt~vafq~s 304 (673)
T KOG4378|consen 281 ST--------------KAPVAVRSAHDA-SVTRVAFQPS 304 (673)
T ss_pred cC--------------CCCceEeeeccc-ceeEEEeeec
Confidence 53 245667778877 7999999983
No 148
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.69 E-value=1e-15 Score=174.58 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=181.6
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCce-eecccc--ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG-RDIPKQ--ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~-~~v~~~--~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrI 195 (1339)
|...|.++..+...+ .+.+|+..++-+||+..... ..+..+ .....+|+++.. .|||+.|++|+.-.++.|
T Consensus 418 HGEvVcAvtIS~~tr-hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL-----~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTR-HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKL-----LPDGRTLIVGGEASTLSI 491 (705)
T ss_pred cCcEEEEEEecCCcc-eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEe-----cCCCceEEeccccceeee
Confidence 356778888888776 88999999999999864321 112111 123678999988 679999999999999999
Q ss_pred EECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 196 LSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 196 WDl~t~~~i~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
||+.......... ....-..+.++ .+||.++.++|..||.|.|||+.+...++. +.||.+++.|+.+++
T Consensus 492 WDLAapTprikaeltssapaCyALa---~spDakvcFsccsdGnI~vwDLhnq~~Vrq------fqGhtDGascIdis~- 561 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALA---ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ------FQGHTDGASCIDISK- 561 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhh---cCCccceeeeeccCCcEEEEEcccceeeec------ccCCCCCceeEEecC-
Confidence 9998654332221 02222334444 899999999999999999999998877665 799999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-eEEEccCCcccccccCcc
Q 000709 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg-~LWDi~t~~~~~~~~~l~ 353 (1339)
+|..|-||+-|.+||.||+++++.++. ......|.++-+.|++.+|+.|+.+ .+|-+.+..
T Consensus 562 --dGtklWTGGlDntvRcWDlregrqlqq-------hdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--------- 623 (705)
T KOG0639|consen 562 --DGTKLWTGGLDNTVRCWDLREGRQLQQ-------HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--------- 623 (705)
T ss_pred --CCceeecCCCccceeehhhhhhhhhhh-------hhhhhhheecccCCCccceeeecccCcEEEEecCC---------
Confidence 899999999999999999999887654 2345678899999999999777554 588877542
Q ss_pred ccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
.....+..|.. -|.++.|.+ .+..+++.+.|..+ ..|.
T Consensus 624 -----p~kyqlhlheS-cVLSlKFa~-cGkwfvStGkDnlL-nawr 661 (705)
T KOG0639|consen 624 -----PEKYQLHLHES-CVLSLKFAY-CGKWFVSTGKDNLL-NAWR 661 (705)
T ss_pred -----ccceeeccccc-EEEEEEecc-cCceeeecCchhhh-hhcc
Confidence 11234455666 799999999 56667777788775 6774
No 149
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.68 E-value=5.7e-15 Score=159.61 Aligned_cols=279 Identities=18% Similarity=0.183 Sum_probs=193.7
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC--------cEEEEEecCCc-------eeec
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--------KAIFLDLVTMR-------GRDI 157 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d--------g~I~wD~~t~~-------~~~v 157 (1339)
.|+.|.+.++....... ......|+.+.|+.++-+|..+.+|+++..+ +..+|.+.... ..++
T Consensus 38 ~dNqVhll~~d~e~s~l--~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSEL--LSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred CcceeEEEEecCccchh--hhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHh
Confidence 46777777766543321 2334456688899999999888788887542 22366443211 1122
Q ss_pred cccc-cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEe----cCCCCCeeEEEEeeeCCCCCEEE
Q 000709 158 PKQE-LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYT----GGHKGSISCLMTFMASSGEALLV 231 (1339)
Q Consensus 158 ~~~~-~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~-i~~l~----~gH~~~V~sl~wf~~spdg~~La 231 (1339)
..+. .+-+.|.|+.| .|++..+++- .|..|.+|++..+.. +..+. .+|....++-+|- .+.+++.++
T Consensus 116 ~~Ldteavg~i~cvew-----~Pns~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Ws-pHHdgnqv~ 188 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEW-----EPNSDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWS-PHHDGNQVA 188 (370)
T ss_pred hcCCHHHhCceeeEEE-----cCCCCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccC-CCCccceEE
Confidence 2222 33458999999 5678888876 488899999987644 33332 2466677777774 556888888
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCccc
Q 000709 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLA 311 (1339)
Q Consensus 232 SgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~ 311 (1339)
+. .|+++..||+++.++...+ -..|...|..+.|+| +...+|++|++||.|+|||.+.-+. ++..+.
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI-----~dAHgq~vrdlDfNp--nkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~ 255 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSI-----EDAHGQRVRDLDFNP--NKQHILVTCGDDGYVRIWDTRKTKF-----PVQELP 255 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcch-----hhhhcceeeeccCCC--CceEEEEEcCCCccEEEEeccCCCc-----cccccC
Confidence 74 5899999999987765432 367888999999999 4667899999999999999986542 344589
Q ss_pred ccCCceeEEEeCCCCC--EEEEecCCe--EEEccCCcccc---------------cccCccccCCCCCCeEEccCCcccE
Q 000709 312 CHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSA---------------LTRPLCELSSLVPPQVLAHHKKLRV 372 (1339)
Q Consensus 312 ~H~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~~~---------------~~~~l~~~~~~~~~~tl~~~~~~~I 372 (1339)
+|+..||++.|+|... +|++|.|.. +|....-.... ..++...+ ..-.+.++..|.+ .|
T Consensus 256 ~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL-~dg~l~tydehED-SV 333 (370)
T KOG1007|consen 256 GHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPL-QDGQLETYDEHED-SV 333 (370)
T ss_pred CCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccc-ccccccccccccc-ce
Confidence 9999999999999754 669999987 56554321100 00111101 1122456777887 89
Q ss_pred EEEEEecCCCcEEEEEECCCeEE
Q 000709 373 YCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 373 ~~la~sp~~~~lLatGs~DG~Il 395 (1339)
++++||..++.++|+-+.||.++
T Consensus 334 Y~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 334 YALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred EEEeeccCCCeeEEEeccCceEE
Confidence 99999999999999999999975
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.68 E-value=2.5e-15 Score=176.38 Aligned_cols=285 Identities=18% Similarity=0.204 Sum_probs=195.1
Q ss_pred eEEEEEcCCeEEEEEcCCccccccc--cccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 87 VKQVNFYDDDVRFWQLWRNRAAAAE--APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 87 V~sVaF~Dg~IrlWDl~~~~~l~~~--~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
|..++-.||.|.++|.......... ...... |...|..+.|-| |+..|++.+.|.++ .||+.+.++.......+|
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhccccc-ccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 4444447899999998765432110 122233 488899999999 77799999999999 679998877666567899
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe---------------------------EEEEEecCCCCCee
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK---------------------------LVRRYTGGHKGSIS 216 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~---------------------------~i~~l~~gH~~~V~ 216 (1339)
...|.+++|+|. +...+++|+.||.|.|||++-.. .+.... .|...|.
T Consensus 144 ~~SvkS~cf~~~----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti~ 218 (720)
T KOG0321|consen 144 TGSVKSECFMPT----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-AASNTIF 218 (720)
T ss_pred ccccchhhhccC----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-cccCcee
Confidence 999999999753 56789999999999999986321 011111 3444444
Q ss_pred EEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceeccccc--cccc---ccceEEEEeeccCCCCCEEEEEeCCCcE
Q 000709 217 CLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLS--LKAH---DGGVVAVELSRVMGGSPQLITIGADKTL 290 (1339)
Q Consensus 217 sl~wf~~spdg~~LaSgS~-DgtVrVWDl~tg~~~~~~~~~~~--l~gH---~~~V~svafsp~~~dg~~LaSgs~Dg~I 290 (1339)
+-....+..|...|++++. |+.|+|||++...+.....+... +..| ..++.++.... .|.+|...+.|++|
T Consensus 219 ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs---sGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 219 SSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS---SGTYLFASCTDNSI 295 (720)
T ss_pred eeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC---CCCeEEEEecCCcE
Confidence 4101124568889999888 99999999998765433222211 2233 34567777765 56777777779999
Q ss_pred EEEECCCCeeEEEecCCCcccccCCcee--EEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEc
Q 000709 291 AIWDTVSFKELRRIKPVPKLACHSVASW--CHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLA 365 (1339)
Q Consensus 291 rIWDl~t~~~l~~~~~~~~l~~H~~~V~--svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~ 365 (1339)
++|++.+... .+...+.+|...-. .-..+||+..+ +++.|.. +|.+.+.. .+...+.
T Consensus 296 y~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--------------~~~~~l~ 357 (720)
T KOG0321|consen 296 YFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--------------APPALLL 357 (720)
T ss_pred EEEeccccCc----CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--------------CChhhhh
Confidence 9999986442 12222334433211 33467888855 7888886 89888652 3344566
Q ss_pred cCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 366 HHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 366 ~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
+|.. .|++++|.|..-.-++++++|-.+ ++|++.
T Consensus 358 Ght~-eVt~V~w~pS~~t~v~TcSdD~~~-kiW~l~ 391 (720)
T KOG0321|consen 358 GHTR-EVTTVRWLPSATTPVATCSDDFRV-KIWRLS 391 (720)
T ss_pred Ccce-EEEEEeeccccCCCceeeccCcce-EEEecc
Confidence 7776 899999999766668888999887 899973
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=7.9e-15 Score=178.59 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=186.9
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
....+.++|.|+|+ +|++|+.|+.| +|+..+.. ........+...|.+++. ++.+|++|+.+++|.+|.+
T Consensus 13 t~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~-e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 13 TGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDE-EEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred cCceEEEEEcCCCC-EEEEecCCCceEEeecCCcc-cCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence 56688999999998 88999989888 56443321 112222337888999887 5779999999999999999
Q ss_pred CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000709 199 ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1339)
Q Consensus 199 ~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1339)
.+++.-..+. ...-++.+++ ++.+|++++.||.|-.|++-++.+..... .+++|+.+|.++.|+| .+
T Consensus 84 ps~~~~~iL~-Rftlp~r~~~---v~g~g~~iaagsdD~~vK~~~~~D~s~~~------~lrgh~apVl~l~~~p---~~ 150 (933)
T KOG1274|consen 84 PSGEEDTILA-RFTLPIRDLA---VSGSGKMIAAGSDDTAVKLLNLDDSSQEK------VLRGHDAPVLQLSYDP---KG 150 (933)
T ss_pred CCCCccceee-eeeccceEEE---EecCCcEEEeecCceeEEEEeccccchhe------eecccCCceeeeeEcC---CC
Confidence 8775543333 4567888887 78999999999999999999998876544 3799999999999999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEEecCCCccccc--CCceeEEEeCCC-CCEEEEecCCe--EEEccCCcccccccCcc
Q 000709 279 PQLITIGADKTLAIWDTVSFKELRRIKPVPKLACH--SVASWCHPRAPN-LDILTCVKDSH--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 279 ~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H--~~~V~svafspd-g~iLs~s~Dg~--LWDi~t~~~~~~~~~l~ 353 (1339)
.+|++.+.||.|++||++++.+..++..+...... ...+..++|+|+ |.+++.+.|+. +|+.....
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we--------- 221 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE--------- 221 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce---------
Confidence 99999999999999999999988887655433222 334668999999 55777777775 56555321
Q ss_pred ccCCCCCCeEEcc-CCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 354 ELSSLVPPQVLAH-HKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 354 ~~~~~~~~~tl~~-~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
....+.. +....+.++.|+| .|.+||+++-+|.| .+||..+
T Consensus 222 ------~~f~Lr~~~~ss~~~~~~wsP-nG~YiAAs~~~g~I-~vWnv~t 263 (933)
T KOG1274|consen 222 ------LQFKLRDKLSSSKFSDLQWSP-NGKYIAASTLDGQI-LVWNVDT 263 (933)
T ss_pred ------eheeecccccccceEEEEEcC-CCcEEeeeccCCcE-EEEeccc
Confidence 1122222 2222499999999 58889999999998 5999883
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=6.1e-15 Score=162.08 Aligned_cols=241 Identities=15% Similarity=0.188 Sum_probs=172.9
Q ss_pred CCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--
Q 000709 132 GRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-- 208 (1339)
Q Consensus 132 g~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~-- 208 (1339)
+..++++++.-|.|++ |+.++++ .....+|+..|+.+.|+|. +.++++++|.|.+||+||+++..++..+-
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~--~~~~~ghG~sINeik~~p~----~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQC--SKNYRGHGGSINEIKFHPD----RPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhh--ccceeccCccchhhhcCCC----CCcEEEEecCCceEEEEeccCCeEEEEeccc
Confidence 4458899999999966 9998865 5567899999999999763 46799999999999999999999998883
Q ss_pred cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc---------------------eecccc-cccccccce
Q 000709 209 GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR---------------------ELVPKL-SLKAHDGGV 266 (1339)
Q Consensus 209 ~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~---------------------~~~~~~-~l~gH~~~V 266 (1339)
.||.+.|.++. ++.+|.+|+||+.|.++++|++...+... ...+.+ +-.-|...|
T Consensus 178 egHrdeVLSvD---~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 178 EGHRDEVLSVD---FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccCcEEEEE---EcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 48999999998 79999999999999999999998432100 000111 235588888
Q ss_pred EEEEeeccCCCCCEEEEEeCCCcEEEEEC-CCCeeEEEecCC-------CcccccCCceeEEEeCC--CCCEEEE-ecCC
Q 000709 267 VAVELSRVMGGSPQLITIGADKTLAIWDT-VSFKELRRIKPV-------PKLACHSVASWCHPRAP--NLDILTC-VKDS 335 (1339)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl-~t~~~l~~~~~~-------~~l~~H~~~V~svafsp--dg~iLs~-s~Dg 335 (1339)
.|+.|- ++++++-|-++.|..|.. +-++.++..++. ..+......+|.+.|.- -+++|++ ...|
T Consensus 255 DCvrw~-----gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 255 DCVRWF-----GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred HHHHHH-----hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCC
Confidence 888886 479999999999999988 322232222221 12334445677776654 4667754 4556
Q ss_pred e--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 336 H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 336 ~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
. +||++..... .............|...+|+. ++.+|+...+|++| .-||-
T Consensus 330 ~v~vwdL~~~ep~------------~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~V-wrwdr 382 (385)
T KOG1034|consen 330 KVYVWDLDNNEPP------------KCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTV-WRWDR 382 (385)
T ss_pred cEEEEECCCCCCc------------cCceEEeccccceeeeeeecc-cCcEEEEEeCCCcE-EEEEe
Confidence 5 7999864211 111111222334788999999 57778888899997 57764
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.66 E-value=3e-15 Score=175.81 Aligned_cols=276 Identities=17% Similarity=0.214 Sum_probs=169.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE-EeccCccceEEec---cccceeEeeccccCCCcc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYE-LKAGGVDQRRLVG---AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~-~~~~~~~~i~~vs---~d~~~Lasgs~d~~gk~~ 79 (1339)
++.+..|.+.|..+.|-|....|++++.|.++++||+.+++++.. +..+|...+..++ .+-..+++|+
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg-------- 164 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG-------- 164 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc--------
Confidence 667789999999999999666999999999999999998777654 2224433333333 1222222222
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPK 159 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~ 159 (1339)
.||.|.|||+.-...- .+ ......+ ++..++.- -......+.+..
T Consensus 165 -------------RDg~illWD~R~n~~d-----~~-e~~~~~~--------------~~~~n~~p--tpskp~~kr~~k 209 (720)
T KOG0321|consen 165 -------------RDGEILLWDCRCNGVD-----AL-EEFDNRI--------------YGRHNTAP--TPSKPLKKRIRK 209 (720)
T ss_pred -------------CCCcEEEEEEeccchh-----hH-HHHhhhh--------------hccccCCC--CCCchhhccccc
Confidence 3556666665443210 00 0000000 00000000 000000011222
Q ss_pred cccCCC----CeEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe-------cCC---CCCeeEEEEeeeC
Q 000709 160 QELDNK----SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT-------GGH---KGSISCLMTFMAS 224 (1339)
Q Consensus 160 ~~~h~~----~V~~vaf~P~s~Spdg~~LasGs~-DgtIrIWDl~t~~~i~~l~-------~gH---~~~V~sl~wf~~s 224 (1339)
...+.. .|+.+.| .|...|++++. |+.|+|||++......... .-| ...+.++. ..
T Consensus 210 ~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~---lD 280 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI---LD 280 (720)
T ss_pred cccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE---ec
Confidence 233333 4555666 58889999887 9999999998654332221 023 33455554 56
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceE--EEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV--AVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 225 pdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~--svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
..|.+|+..+.|+.|.+|++.+-.. .+...+.+|...-. .-..+| ++.++++|+.|....+|.+.+.+.--
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~----sP~~~~sg~~~~sf~vks~lSp---d~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSI----SPVAEFSGKLNSSFYVKSELSP---DDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCc----CchhhccCcccceeeeeeecCC---CCceEeccCCCcceeeeeecCccCCh
Confidence 6777777777799999999987542 23334444432211 123456 78999999999999999998765322
Q ss_pred EecCCCcccccCCceeEEEeCCC--CCEEEEecCCe--EEEccCC
Q 000709 303 RIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 303 ~~~~~~~l~~H~~~V~svafspd--g~iLs~s~Dg~--LWDi~t~ 343 (1339)
..+.+|...|++++|.|. ..+++|++|.+ ||++..+
T Consensus 354 -----~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 354 -----ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----hhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 237899999999999875 56899998886 8999654
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.66 E-value=2.4e-15 Score=167.64 Aligned_cols=210 Identities=18% Similarity=0.225 Sum_probs=163.4
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC----------------CeEEEEEecCCCCCeeEEEEeeeC
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS----------------WKLVRRYTGGHKGSISCLMTFMAS 224 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t----------------~~~i~~l~~gH~~~V~sl~wf~~s 224 (1339)
..|.+.++.+.-.+ -++..+.++=+..|.|+|||+.. .+.+.++. +|.+.-+.++|- +
T Consensus 148 i~h~g~~NRvr~~~---~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWS--p 221 (440)
T KOG0302|consen 148 IPHYGGINRVRVSR---LGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWS--P 221 (440)
T ss_pred cccccccceeeecc---cCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecc--c
Confidence 34555555555532 13455666677899999999852 24566665 899999999963 2
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC---eeE
Q 000709 225 SGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF---KEL 301 (1339)
Q Consensus 225 pdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~---~~l 301 (1339)
.....|+||..-+.|++|...++..... ...+.+|+..|-.++|+|. ....|+|||.||+|+|||++.+ .++
T Consensus 222 ~~~g~LlsGDc~~~I~lw~~~~g~W~vd---~~Pf~gH~~SVEDLqWSpt--E~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 222 IKTGRLLSGDCVKGIHLWEPSTGSWKVD---QRPFTGHTKSVEDLQWSPT--EDGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ccccccccCccccceEeeeeccCceeec---CccccccccchhhhccCCc--cCceEEeeecCceEEEEEecCCCcccee
Confidence 2334578888889999999998764322 3346789999999999994 6789999999999999999988 344
Q ss_pred EEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEe
Q 000709 302 RRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAH 378 (1339)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~s 378 (1339)
.+ ..|...|+.+.|+.+-.+| +|+.||+ |||++.- +...++..|..|.. +|+++.|+
T Consensus 297 ~~-------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~------------~~~~pVA~fk~Hk~-pItsieW~ 356 (440)
T KOG0302|consen 297 ST-------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF------------KSGQPVATFKYHKA-PITSIEWH 356 (440)
T ss_pred Ee-------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc------------cCCCcceeEEeccC-CeeEEEec
Confidence 33 7899999999999987755 6778886 8999953 33467889999998 99999999
Q ss_pred cCCCcEEEEEECCCeEEEEecCCC
Q 000709 379 SLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 379 p~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
|.....|++++.|..| .+||+.-
T Consensus 357 p~e~s~iaasg~D~Qi-tiWDlsv 379 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQI-TIWDLSV 379 (440)
T ss_pred cccCceEEeccCCCcE-EEEEeec
Confidence 9988889999999997 7999764
No 155
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.8e-15 Score=171.45 Aligned_cols=291 Identities=16% Similarity=0.170 Sum_probs=203.4
Q ss_pred ccCccceEEec--cccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeee
Q 000709 51 AGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP 128 (1339)
Q Consensus 51 ~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slaf 128 (1339)
.+|.+.+++++ +.|..|++|+ .||++|+|.+.+++|+.. -...+.|.|++|
T Consensus 397 rGHtg~Vr~iSvdp~G~wlasGs---------------------dDGtvriWEi~TgRcvr~------~~~d~~I~~vaw 449 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGEWLASGS---------------------DDGTVRIWEIATGRCVRT------VQFDSEIRSVAW 449 (733)
T ss_pred eccCCeEEEEEecCCcceeeecC---------------------CCCcEEEEEeecceEEEE------EeecceeEEEEe
Confidence 36777787777 8899999987 689999999999999841 112557999999
Q ss_pred CCCCCeEEEEEe-cCcEEEEEecCCc-----------------------------------eeeccccccCCCCeEEEEE
Q 000709 129 STKGRHFLVICC-VNKAIFLDLVTMR-----------------------------------GRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 129 spdg~~lLasgs-~dg~I~wD~~t~~-----------------------------------~~~v~~~~~h~~~V~~vaf 172 (1339)
+|.+...++... .+...++|..-|. ...+.....|...|+.|.|
T Consensus 450 ~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 450 NPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred cCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 998765444333 3332233321110 0011223456778999999
Q ss_pred eeccccCCCCEEEEEECC---CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000709 173 LSRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~D---gtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~ 249 (1339)
+..|.||++.+-+ ..|.|+++...+...-|. ...+.|.++. |+|...+|+.++ -..|++||+.....
T Consensus 530 -----HrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~---FHPs~p~lfVaT-q~~vRiYdL~kqel 599 (733)
T KOG0650|consen 530 -----HRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVK---FHPSKPYLFVAT-QRSVRIYDLSKQEL 599 (733)
T ss_pred -----ecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEE---ecCCCceEEEEe-ccceEEEehhHHHH
Confidence 5789999998754 468899987655444443 4567788886 788888888766 46899999988666
Q ss_pred cceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
++. +......|.+++.|| .|..|+.|+.|+.+..+|+.-.. ++..++.-|...+++|+||+.-.++
T Consensus 600 vKk------L~tg~kwiS~msihp---~GDnli~gs~d~k~~WfDldlss-----kPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 600 VKK------LLTGSKWISSMSIHP---NGDNLILGSYDKKMCWFDLDLSS-----KPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred HHH------HhcCCeeeeeeeecC---CCCeEEEecCCCeeEEEEcccCc-----chhHHhhhhhhhhhhhhhcccccee
Confidence 554 444567799999999 78999999999999999997443 2344588999999999999998877
Q ss_pred -EEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCc---ccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000709 330 -TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKK---LRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 330 -s~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~---~~I~~la~sp~~~~lLatGs~DG~IlriW 398 (1339)
+|+.||++.-.....+..+ ....-.+++..+.+|.. ..|..+.|||..+. |++++.||+| |+|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl----~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW-LfsAGAd~ti-rlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDL----LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW-LFSAGADGTI-RLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhh----hcCCceEeeeeccCceeecccceEeecccCCCce-EEecCCCceE-Eee
Confidence 5677787433222222111 11112244555666654 24888889996554 8888889997 888
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.65 E-value=5.6e-13 Score=155.47 Aligned_cols=326 Identities=23% Similarity=0.365 Sum_probs=229.2
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeccCccceEE--e-ccccc-eeEeeccccCCCccc
Q 000709 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-VIYELKAGGVDQRRL--V-GAKLE-KLAEGELEHKGKPTE 80 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~-~l~~~~~~~~~~i~~--v-s~d~~-~Lasgs~d~~gk~~~ 80 (1339)
.+.+|...|.++.|++.+..++.++.|+.+.+|+...+. .+..+...+...+.. . .+++. .+...+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 130 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS--------- 130 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC---------
Confidence 467899999999999999999999999999999999886 666665432211111 1 22222 111111
Q ss_pred cccCCceEEEEEcCCeEEEEEcCC-ccccccccccccccCCCCeeeeeeCCCCCeEEEEEec-CcEE-EEEecCCceeec
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWR-NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDI 157 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~-~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-dg~I-~wD~~t~~~~~v 157 (1339)
..++.+++|+... .... ..... +...|.++.|+|+++ .+++++. ++.+ .|+...... +
T Consensus 131 -----------~~d~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~ 191 (466)
T COG2319 131 -----------SLDGTVKLWDLSTPGKLI----RTLEG-HSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKP--L 191 (466)
T ss_pred -----------CCCccEEEEEecCCCeEE----EEEec-CcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCce--E
Confidence 1388999999987 3222 22333 377889999999998 6677764 7777 668776433 3
Q ss_pred cccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEECCCCeEEE-EEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000709 158 PKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVR-RYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1339)
Q Consensus 158 ~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DgtIrIWDl~t~~~i~-~l~~gH~~~V~sl~wf~~spdg~~LaSgS~ 235 (1339)
.....|...|.+++| +|++. .+++++.|+.|++||...+..+. .+. +|...+ ... +++++..+++++.
T Consensus 192 ~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~-~~~---~~~~~~~~~~~~~ 261 (466)
T COG2319 192 STLAGHTDPVSSLAF-----SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS-GHSDSV-VSS---FSPDGSLLASGSS 261 (466)
T ss_pred EeeccCCCceEEEEE-----cCCcceEEEEecCCCcEEEEECCCCcEEeeecC-CCCcce-eEe---ECCCCCEEEEecC
Confidence 345668999999999 56777 55555899999999998887777 454 787775 333 6888889999999
Q ss_pred CCcEEEEeCCCCCc-cceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 236 DGLLILWSADHGQD-SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 236 DgtVrVWDl~tg~~-~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
|+.+++|+...... ... +.+|...|.++.|+| ++..+++++.|+.+++||..+........ ...|.
T Consensus 262 d~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~ 328 (466)
T COG2319 262 DGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSP---DGKLLASGSSDGTVRLWDLETGKLLSSLT----LKGHE 328 (466)
T ss_pred CCcEEEeeecCCCcEEEE------EecCCccEEEEEECC---CCCEEEEeeCCCcEEEEEcCCCceEEEee----ecccC
Confidence 99999999987664 221 267889999999999 67788889999999999998877666532 24677
Q ss_pred CceeEEEeCCCCC-EEEE-ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE-EE
Q 000709 315 VASWCHPRAPNLD-ILTC-VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT-GT 389 (1339)
Q Consensus 315 ~~V~svafspdg~-iLs~-s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat-Gs 389 (1339)
..+..+.|.+++. ++.+ ..|+. +|++.... ........ . .+..+.+++ . ..+.. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------------~~~~~~~~-~-~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 329 GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---------------PLKTLEGH-S-NVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---------------eeEEecCC-c-eEEEEEECC-C-CCEEEEec
Confidence 7788888843323 3444 46654 57777431 01111111 1 278889988 6 54554 78
Q ss_pred CCCeEEEEecCCC
Q 000709 390 NVGVIISEFDPRS 402 (1339)
Q Consensus 390 ~DG~IlriWd~~~ 402 (1339)
.++.+ .+|+...
T Consensus 390 ~~~~~-~~~~~~~ 401 (466)
T COG2319 390 TDGTV-RLWDLST 401 (466)
T ss_pred CCCce-EEEeccc
Confidence 88886 7998764
No 157
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.65 E-value=1.8e-14 Score=155.86 Aligned_cols=212 Identities=17% Similarity=0.202 Sum_probs=160.7
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce----------ee---ccccccCCCCeEEEEEeeccccCCCCEE
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----------RD---IPKQELDNKSLVCMEFLSRSAVGDVPLV 184 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~----------~~---v~~~~~h~~~V~~vaf~P~s~Spdg~~L 184 (1339)
|.+.|+++...+...+++++|+.|+.+ +||++...- .+ ......|.-.|..+.|.|. |.-.+
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~----DtGmF 117 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI----DTGMF 117 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee----cCcee
Confidence 467788888887655599999999988 668764320 11 1122456778999999873 56688
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccccc
Q 000709 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1339)
Q Consensus 185 asGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~ 264 (1339)
.+++.|.+++|||.++.+....|. -.+.|++-+|-.......++++|..|-.|++.|+.+|.+.+. +.||.+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~------LsGHr~ 189 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHT------LSGHRD 189 (397)
T ss_pred ecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceee------eccccC
Confidence 999999999999999988887774 455666555322233445888999999999999999987665 899999
Q ss_pred ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC-eeEEEecCCC--------cccccCCceeEEEeCCCCCEE-EEecC
Q 000709 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVP--------KLACHSVASWCHPRAPNLDIL-TCVKD 334 (1339)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~~~--------~l~~H~~~V~svafspdg~iL-s~s~D 334 (1339)
+|.++.|+| ...-.|++|+.||.|++||++.- .|...+.... .-..|.+.|..++|+.++..+ +++.|
T Consensus 190 ~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 190 GVLAVEWSP--SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred ceEEEEecc--CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCc
Confidence 999999999 35567889999999999999864 3444442211 245788899999999999865 77877
Q ss_pred Ce--EEEccCCc
Q 000709 335 SH--IWAIEHPT 344 (1339)
Q Consensus 335 g~--LWDi~t~~ 344 (1339)
.+ +|+..++.
T Consensus 268 ~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 268 DRIRVWNMESGR 279 (397)
T ss_pred cceEEeecccCc
Confidence 75 89988763
No 158
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=158.47 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=200.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEEE
Q 000709 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 14 V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
-.|+.|++-|.+||+|+.||.|.|||+.|...-+.+. .|...+.+++ ++|+.|.+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS-------------------- 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSS-------------------- 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeec--------------------
Confidence 6899999999999999999999999999877555554 6677788777 8999999887
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEec-CcEEEEEecCCceeeccccccC--CCCeE
Q 000709 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-NKAIFLDLVTMRGRDIPKQELD--NKSLV 168 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-dg~I~wD~~t~~~~~v~~~~~h--~~~V~ 168 (1339)
.|..|.+||+..+.+++ .-...+.|+.+.|+|..++.++++-. ..-++++...+....++..... +....
T Consensus 85 -~D~si~lwDl~~gs~l~------rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas 157 (405)
T KOG1273|consen 85 -RDWSIKLWDLLKGSPLK------RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSAS 157 (405)
T ss_pred -CCceeEEEeccCCCcee------EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccc
Confidence 57899999999997753 12236789999999976655555443 3334445554433333222111 22333
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
+..| .+.|++|++|...|.+.++|..+.+++..+.......|..+. ++..|++|+.-+.|+.||.|+++.-.
T Consensus 158 ~~~f-----dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~---~s~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 158 HGVF-----DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQII---VSRKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred cccc-----cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEE---EeccCcEEEEecCCceEEEEehhhhc
Confidence 4456 678999999999999999999999999888633335666665 89999999999999999999986311
Q ss_pred cc---ceecccccccc--cccceEEEEeeccCCCCCEEEEEeC-CCcEEEEECCCCeeEEEecCCCcccccC-CceeEEE
Q 000709 249 DS---RELVPKLSLKA--HDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHS-VASWCHP 321 (1339)
Q Consensus 249 ~~---~~~~~~~~l~g--H~~~V~svafsp~~~dg~~LaSgs~-Dg~IrIWDl~t~~~l~~~~~~~~l~~H~-~~V~sva 321 (1339)
.. .+..+...+.. ..-.-.+++|+. +|.|++.++. -..++||.-..|..++.+ .|.. .....+.
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~---dgeYv~a~s~~aHaLYIWE~~~GsLVKIL------hG~kgE~l~DV~ 300 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSG---DGEYVCAGSARAHALYIWEKSIGSLVKIL------HGTKGEELLDVN 300 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecC---CccEEEeccccceeEEEEecCCcceeeee------cCCchhheeecc
Confidence 10 01111111110 112235678887 7888887763 567999999999998884 4444 3455788
Q ss_pred eCCCCCEEEEecCCe--EEEccC
Q 000709 322 RAPNLDILTCVKDSH--IWAIEH 342 (1339)
Q Consensus 322 fspdg~iLs~s~Dg~--LWDi~t 342 (1339)
|+|-..+++.-..|. ||....
T Consensus 301 whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 301 WHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred cccceeeeeeccCCceEEEEeec
Confidence 988877665434443 786653
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.64 E-value=4.4e-15 Score=169.43 Aligned_cols=269 Identities=12% Similarity=0.165 Sum_probs=188.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeecccc-ccCCCCeEEEEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ-ELDNKSLVCMEF 172 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~-~~h~~~V~~vaf 172 (1339)
...+++||....+.......... ...+.+++|+......+++.+.|..+++.-+.++.-.++.. ....+.-.|++.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~---~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTA---EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred CCceEEeecccccCccccccCCC---CCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 56899999877654321111111 22488899988764233344566666554444432223222 222333344444
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
.....|+++|+..+.|+|||++...+.+.+. +|...|+++. +.....+|++++..|.|.|..+.++.....
T Consensus 88 -----~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-dh~stvt~v~---YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 88 -----ASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-DHQSTVTYVD---YNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -----hhcceeeeccCcCceeeehhhHHHHHhhhcc-CCcceeEEEE---ecCCcceeEEeccCCcEEEEecccCccccc
Confidence 2235899999999999999999655555555 9999999997 677888999999999999999998865443
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC--EEE
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILT 330 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--iLs 330 (1339)
+. .+....|.-+.|+|. ...+|.+++++|.|.+||+....++..+ ...|..+...++|+|... +++
T Consensus 159 f~-----~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g~sp~~~~-----~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 159 FT-----IDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQGMSPIFHA-----SEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred ee-----cCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccCCCcccch-----hhhccCCcCcceecCCccceEEE
Confidence 21 122345678999994 5678889999999999999987766654 678999999999999877 447
Q ss_pred EecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC
Q 000709 331 CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA 405 (1339)
Q Consensus 331 ~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~ 405 (1339)
.|.|.+ +||+..... ...+... .+...++|++ ++.+|+.|...|.| ..||+|..+.
T Consensus 227 VG~Dkki~~yD~~s~~s---------------~~~l~y~--~Plstvaf~~-~G~~L~aG~s~G~~-i~YD~R~~k~ 284 (673)
T KOG4378|consen 227 VGYDKKINIYDIRSQAS---------------TDRLTYS--HPLSTVAFSE-CGTYLCAGNSKGEL-IAYDMRSTKA 284 (673)
T ss_pred ecccceEEEeecccccc---------------cceeeec--CCcceeeecC-CceEEEeecCCceE-EEEecccCCC
Confidence 899998 577774321 1111111 2688999999 68889999999998 5999998654
No 160
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.9e-14 Score=176.00 Aligned_cols=298 Identities=13% Similarity=0.208 Sum_probs=192.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
..-..+.|||-.+.+++++..-.|+|||++.++++..|..+....
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~----------------------------------- 1109 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPD----------------------------------- 1109 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCC-----------------------------------
Confidence 345678899999999999888899999999999988887543111
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeee-CCCCCeEEEEEecCcEE-EE-EecCC--ceeecccc------
Q 000709 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP-STKGRHFLVICCVNKAI-FL-DLVTM--RGRDIPKQ------ 160 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slaf-spdg~~lLasgs~dg~I-~w-D~~t~--~~~~v~~~------ 160 (1339)
..|+.+.+ +.+...++.+|+.||.| +| |+... +.+.+.-+
T Consensus 1110 -----------------------------t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~ 1160 (1387)
T KOG1517|consen 1110 -----------------------------TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQ 1160 (1387)
T ss_pred -----------------------------CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeecccccc
Confidence 11222221 11122255555555555 23 33332 11111000
Q ss_pred -ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 161 -ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 161 -~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
....+.-.-++|. ....+|+++++-..|||||.....++..+..+....|+++. .....|+.|+.|..||.|
T Consensus 1161 ~~~~r~~~~v~dWq-----Q~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGfaDGsv 1233 (1387)
T KOG1517|consen 1161 LPGARGTGLVVDWQ-----QQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGFADGSV 1233 (1387)
T ss_pred CccCCCCCeeeehh-----hhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEeecCCce
Confidence 0111111335673 23344555556889999999998888888767778888886 245568999999999999
Q ss_pred EEEeCCCCCccceecccccccccccc--eEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC---
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS--- 314 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~--V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~--- 314 (1339)
++||.+....-. .....+.|+.. |..+.+.+. +-..|++|+.||.|++||++.......+ ....|.
T Consensus 1234 RvyD~R~a~~ds---~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~DlR~~~~e~~~----~iv~~~~yG 1304 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDS---LVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLLDLRMSSKETFL----TIVAHWEYG 1304 (1387)
T ss_pred EEeecccCCccc---cceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEEecccCcccccc----eeeeccccC
Confidence 999998754321 23346778887 999999882 3346999999999999999974222111 122332
Q ss_pred CceeEEEeCCCCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCC
Q 000709 315 VASWCHPRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1339)
Q Consensus 315 ~~V~svafspdg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG 392 (1339)
+.++++..|++..++++|.-+. ||++...... .+. .-..|-+.....+.|++||| ...++|+|..|.
T Consensus 1305 s~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~----~~k------~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds 1373 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSAQLIKIYSLSGEQLN----IIK------YNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADS 1373 (1387)
T ss_pred ccceeeeeccCCCeeeecCcceEEEEecChhhhc----ccc------cCcccccCcCCCcceeeecc-hhHhhhhccCCc
Confidence 2588999999999987765553 8998743211 111 11223344444789999999 467799999999
Q ss_pred eEEEEecCC
Q 000709 393 VIISEFDPR 401 (1339)
Q Consensus 393 ~IlriWd~~ 401 (1339)
.| .+|...
T Consensus 1374 ~V-~iYs~~ 1381 (1387)
T KOG1517|consen 1374 TV-SIYSCE 1381 (1387)
T ss_pred eE-EEeecC
Confidence 97 677543
No 161
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.63 E-value=1.1e-13 Score=161.45 Aligned_cols=151 Identities=17% Similarity=0.262 Sum_probs=114.2
Q ss_pred cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE-EecCCCcccccCCceeEEEeCCCCC--EEEEecCCe--EE
Q 000709 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR-RIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IW 338 (1339)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~-~~~~~~~l~~H~~~V~svafspdg~--iLs~s~Dg~--LW 338 (1339)
..|+.+.|.|+ |...|+.+++||.|++|.+..+..-. ...+...+..|...|+++.|||-.. +++++.|.+ ||
T Consensus 628 t~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 628 TLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred ceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 35788999996 78899999999999999997644222 2233445789999999999999633 447788886 89
Q ss_pred EccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCC-ccccCCCCCCCC
Q 000709 339 AIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPA-VAPLPTPSGSRD 417 (1339)
Q Consensus 339 Di~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~-i~~~~~~~~s~~ 417 (1339)
|+.+... ...+.+|.+ .|.+++||| ++.++|+-+.||.+ |++++++.+. +..-..+-+.+.
T Consensus 706 Dl~~~~~---------------~~~l~gHtd-qIf~~AWSp-dGr~~AtVcKDg~~-rVy~Prs~e~pv~Eg~gpvgtRg 767 (1012)
T KOG1445|consen 706 DLANAKL---------------YSRLVGHTD-QIFGIAWSP-DGRRIATVCKDGTL-RVYEPRSREQPVYEGKGPVGTRG 767 (1012)
T ss_pred ehhhhhh---------------hheeccCcC-ceeEEEECC-CCcceeeeecCceE-EEeCCCCCCCccccCCCCccCcc
Confidence 9997632 345778888 899999999 68889999999997 9999998654 444445555566
Q ss_pred ceEEEEecCeE-EEEEee
Q 000709 418 HSAVYIVEREL-KLVNFQ 434 (1339)
Q Consensus 418 ~s~~~~~~~~l-~l~~f~ 434 (1339)
..+.|..++.+ -...|.
T Consensus 768 ARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 768 ARILWACDGRIVIVVGFD 785 (1012)
T ss_pred eeEEEEecCcEEEEeccc
Confidence 66778877774 334443
No 162
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.63 E-value=7.2e-15 Score=167.08 Aligned_cols=236 Identities=16% Similarity=0.219 Sum_probs=172.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCcE-EEEE-------------------eccCccceEEec---cccceeEeeccccCCCcc
Q 000709 23 HPWLVTADASDHVSVWNWEHRQV-IYEL-------------------KAGGVDQRRLVG---AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 23 g~~LaSgs~DGtIrIWDl~tg~~-l~~~-------------------~~~~~~~i~~vs---~d~~~Lasgs~d~~gk~~ 79 (1339)
|+|+|.|.-|..|.|||+.-... ...+ ..+|++.+..+. .....|++|+
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-------- 263 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-------- 263 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC--------
Confidence 67999999999999999863211 0011 114555555555 2334666665
Q ss_pred ccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeecc
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~ 158 (1339)
.|.+|++||+.++++. ....||...|.++.|+|....+|++|+.|+.+.+ |.+.... ..
T Consensus 264 -------------aD~TV~lWD~~~g~p~-----~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~--s~ 323 (463)
T KOG0270|consen 264 -------------ADKTVKLWDVDTGKPK-----SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSN--SG 323 (463)
T ss_pred -------------CCceEEEEEcCCCCcc-----eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccc--cC
Confidence 5899999999999985 4455779999999999998889999999999977 8774221 11
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg 237 (1339)
..-.-.+.|-.++|.|. ....++++++||+++-+|++.. +++.++. .|.+.|.+++ .+.....++++++.|+
T Consensus 324 ~~wk~~g~VEkv~w~~~----se~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~--~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 324 KEWKFDGEVEKVAWDPH----SENSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLS--VNIQTPGLLSTASTDK 396 (463)
T ss_pred ceEEeccceEEEEecCC----CceeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEE--ecCCCCcceeeccccc
Confidence 11122567889999653 3456788889999999999875 8888887 9999999998 2555677999999999
Q ss_pred cEEEEeCCCCCccceecccccccccc---cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHD---GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~---~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
+|++|++........ ..|. +...|.++.| ...-.++.|+..+.++|||+.+...++
T Consensus 397 ~Vklw~~~~~~~~~v-------~~~~~~~~rl~c~~~~~--~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSV-------KEHSFKLGRLHCFALDP--DVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eEEEEeecCCCCccc-------ccccccccceeecccCC--CcceEEEecCccceEEEeecccChhHH
Confidence 999999875443211 2222 2256677777 355678888888899999998776544
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=3e-14 Score=155.60 Aligned_cols=280 Identities=13% Similarity=0.173 Sum_probs=190.7
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
-.|+.| ++.|.++++|+.||.|.|||+.+...-+.+. +|..+|.|++| +++|++|+|+|.|..|++||+..
T Consensus 26 a~~~~F-----s~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~W---S~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQF-----SRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCW---SRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEe-----ccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEe---cCCCCEeeeecCCceeEEEeccC
Confidence 788999 7899999999999999999999988767765 99999999994 89999999999999999999999
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg 326 (1339)
|.+++.+ ....+|+.+.|||. +.+..+..-.+..-.+-++.... ++.-+...-......-.+..|++.|
T Consensus 97 gs~l~ri-------rf~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 97 GSPLKRI-------RFDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred CCceeEE-------EccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCC
Confidence 9987652 24678999999993 44555555555555566665422 2322211111111122244688889
Q ss_pred CEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 327 DIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 327 ~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
+++ +|...|. +++..+.. +...++......|..+.++. .+..+++.+.|.+| |.++.+..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e---------------~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvI-R~ye~~di 228 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLE---------------CVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVI-RTYEISDI 228 (405)
T ss_pred CEEEEecCcceEEEEecchhe---------------eeeeeeechheeeeEEEEec-cCcEEEEecCCceE-EEEehhhh
Confidence 865 7777776 67777542 23334333323688888888 67779999999997 88876532
Q ss_pred CCccccCCCCCCCCceEEEEecCeEEEEEeeeccCCCCCCCCCcccccCCcccCCCchhhHHHhhcccccccCCCCCccE
Q 000709 404 PAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSI 483 (1339)
Q Consensus 404 p~i~~~~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~ 483 (1339)
.... .+|.. + .++..+.+++...|. .
T Consensus 229 ~~~~-------------------------------------------r~~e~-----e---~~~K~qDvVNk~~Wk---~ 254 (405)
T KOG1273|consen 229 DDEG-------------------------------------------RDGEV-----E---PEHKLQDVVNKLQWK---K 254 (405)
T ss_pred cccC-------------------------------------------ccCCc-----C---hhHHHHHHHhhhhhh---h
Confidence 1000 01110 0 111122234444554 5
Q ss_pred EEEcCCCCEEEEEECCCCEEEEEEeCCceeee-----cCc-eeEEEeccCCCeEEEEecc
Q 000709 484 LSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD-----SGS-ARLLAWDTCRDRFAILESA 537 (1339)
Q Consensus 484 l~~SpdGrylaV~~~~~g~~~Vy~i~~~~~i~-----~G~-~~~~aWs~~~~~fAvl~~~ 537 (1339)
+.||.||.|+...+.....++||.-+...++. .|. ..++.|++-+...+-+++.
T Consensus 255 ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg 314 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASG 314 (405)
T ss_pred eeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCC
Confidence 88999999997777677888899876555433 333 5678899987766666443
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.6e-15 Score=188.85 Aligned_cols=248 Identities=17% Similarity=0.219 Sum_probs=185.3
Q ss_pred CCCeeeeeeCCCCCe---EEEEEecCcEE-EEEecC----CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000709 120 TSGFASPPPSTKGRH---FLVICCVNKAI-FLDLVT----MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1339)
Q Consensus 120 ~~~V~slafspdg~~---lLasgs~dg~I-~wD~~t----~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg 191 (1339)
...++.++|.+.+.. +|+.|.+||.| .||... .+...+.....|.+.|+.+.|.+. .++++++|++||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~----q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF----QGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc----CCceeeccCCCC
Confidence 557889999988765 69999999988 566543 233345566889999999999542 355999999999
Q ss_pred cEEEEECCCCeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEE
Q 000709 192 VIRVLSMISWKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1339)
Q Consensus 192 tIrIWDl~t~~~i~~l-~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1339)
.|.|||+...+.-..+ .......|.+++| .-.....|++++.+|++.|||++..+.+-.+ ...+....+..++
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr~~~pii~l----s~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLRKKKPIIKL----SDTPGRMHCSVLA 213 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceeccccCCCccccc----ccCCCccceeeee
Confidence 9999999864433333 1135578999998 4566789999999999999999987654331 1122223478999
Q ss_pred eeccCCCCCEEEEEeCCC---cEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC-C-EEEEecCCe--EEEccCC
Q 000709 271 LSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-D-ILTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-~-iLs~s~Dg~--LWDi~t~ 343 (1339)
||| ++...|+++++|. .|.+||++.-.. +...+.+|...|.++.|.+.+ + +|+|+.|++ +|+.+++
T Consensus 214 WhP--~~aTql~~As~dd~~PviqlWDlR~ass-----P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 214 WHP--DHATQLLVASGDDSAPVIQLWDLRFASS-----PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred eCC--CCceeeeeecCCCCCceeEeecccccCC-----chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 999 4667777777654 689999885331 233478999999999999977 4 558999998 6999886
Q ss_pred cccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 344 TYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 344 ~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
+. +..+...++ .+..+.|+|.++.++++.+.||.| .|+.+.
T Consensus 287 Ev---------------l~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI-~I~sl~ 327 (1049)
T KOG0307|consen 287 EV---------------LGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKI-SIYSLQ 327 (1049)
T ss_pred eE---------------eeecCCCCc-ceeeeeecCCCcchhhhheeccce-eeeeee
Confidence 43 334444444 899999999999999999999997 677654
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=8.1e-14 Score=158.97 Aligned_cols=237 Identities=14% Similarity=0.153 Sum_probs=171.4
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DgtIrIWD 197 (1339)
.+.|+++.|+|..+ ++++++.|+.+++ -+.......+........+|.+..| .|+|. .+++++....++.||
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f-----~p~G~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEF-----APNGHSVIFTSGRRKYLYSYD 286 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhheeeeeccCccceeee-----cCCCceEEEecccceEEEEee
Confidence 56799999999997 9999999999966 3322222234445566889999999 56888 899999999999999
Q ss_pred CCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 198 MISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 198 l~t~~~i~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
+.+.+..+.-. .++.. .++..|..++++++|+..+..|.|.+....++..+..+ + -.+.|..++|+.
T Consensus 287 le~ak~~k~~~~~g~e~--~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~------K-ieG~v~~~~fsS--- 354 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEE--KSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF------K-IEGVVSDFTFSS--- 354 (514)
T ss_pred ccccccccccCCCCccc--chhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee------e-eccEEeeEEEec---
Confidence 99876543321 24442 23334558999999999999999999999998876652 2 356699999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-e--EEEccCCcccccccCcc
Q 000709 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-H--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg-~--LWDi~t~~~~~~~~~l~ 353 (1339)
++..|+.++.+|.|.+||++...+++++...... .-++++.++++.++++|.|. - |||.++-....
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-----~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~------ 423 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-----HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST------ 423 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-----ceeeeeecCCCceEEeccCcceEEEeccchhhccC------
Confidence 7899999999999999999999999987432211 23478888999998766554 3 77765421111
Q ss_pred ccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEEC
Q 000709 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~ 390 (1339)
..+|+..+..-.. .|+.|.|++ +..++|.++.
T Consensus 424 ---~PkPik~~dNLtt-~Itsl~Fn~-d~qiLAiaS~ 455 (514)
T KOG2055|consen 424 ---NPKPIKTVDNLTT-AITSLQFNH-DAQILAIASR 455 (514)
T ss_pred ---CCCchhhhhhhhe-eeeeeeeCc-chhhhhhhhh
Confidence 1223333333333 799999999 4666766654
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.62 E-value=1.3e-14 Score=156.90 Aligned_cols=202 Identities=16% Similarity=0.175 Sum_probs=155.3
Q ss_pred CCeeeeeeCCCCCeEEEEEecCcEEEEEecCCcee--ec--cccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 121 SGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGR--DI--PKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 121 ~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~--~v--~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
+.|.|+.|.|++. -+++-.++.+++|+....... .+ +....+....++-+|+| +.+++.+++. .|++++.|
T Consensus 124 g~i~cvew~Pns~-klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~Wsp---HHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 124 GKINCVEWEPNSD-KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSP---HHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred CceeeEEEcCCCC-eeEEeccCceEEEEcccCcchheeecccccccccceecccccCC---CCccceEEEe-CCCcEEEE
Confidence 4789999999997 667777888889987765431 11 11123456778888976 4688888876 68899999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCC-CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSG-EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spd-g~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1339)
|+++.++...+..+|...|..+. |+|+ ..+|++|++||.|++||.+.-+. +..++.+|..+|+++.|+|.
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlD---fNpnkq~~lvt~gDdgyvriWD~R~tk~-----pv~el~~HsHWvW~VRfn~~- 269 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLD---FNPNKQHILVTCGDDGYVRIWDTRKTKF-----PVQELPGHSHWVWAVRFNPE- 269 (370)
T ss_pred Eccchhhhcchhhhhcceeeecc---CCCCceEEEEEcCCCccEEEEeccCCCc-----cccccCCCceEEEEEEecCc-
Confidence 99999999898889999999998 5665 45789999999999999987652 56678999999999999995
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEE------------------EecC-----CCcccccCCceeEEEeCCCCCEE--E
Q 000709 276 GGSPQLITIGADKTLAIWDTVSFKELR------------------RIKP-----VPKLACHSVASWCHPRAPNLDIL--T 330 (1339)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~------------------~~~~-----~~~l~~H~~~V~svafspdg~iL--s 330 (1339)
..++|++||.|..|.+|-..+-..-+ +.++ +.++..|.+.|++++||.-...+ +
T Consensus 270 -hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 270 -HDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred -cceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 56799999999999999664321000 0011 22467899999999999877744 4
Q ss_pred EecCCeE
Q 000709 331 CVKDSHI 337 (1339)
Q Consensus 331 ~s~Dg~L 337 (1339)
-|.||++
T Consensus 349 LSYDGRv 355 (370)
T KOG1007|consen 349 LSYDGRV 355 (370)
T ss_pred eccCceE
Confidence 5799984
No 167
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.2e-14 Score=165.26 Aligned_cols=237 Identities=17% Similarity=0.191 Sum_probs=176.0
Q ss_pred eEEEEEecCcEE-EEEecCCce--e-----------------eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000709 134 HFLVICCVNKAI-FLDLVTMRG--R-----------------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1339)
Q Consensus 134 ~lLasgs~dg~I-~wD~~t~~~--~-----------------~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtI 193 (1339)
++++.|+.+..| +||+.-... . .-....+|.+.|..+.|. --..+.|++||.|.+|
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n----~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN----RNFRNVLASGSADKTV 268 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc----cccceeEEecCCCceE
Confidence 399999999999 886431110 0 001123577788888883 1235789999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
++||+.++++...+. .|.+.|.++.| ++.....|++||.|++|.+.|.+...+... .+ ...+.|-.++|+|
T Consensus 269 ~lWD~~~g~p~~s~~-~~~k~Vq~l~w--h~~~p~~LLsGs~D~~V~l~D~R~~~~s~~-----~w-k~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSIT-HHGKKVQTLEW--HPYEPSVLLSGSYDGTVALKDCRDPSNSGK-----EW-KFDGEVEKVAWDP 339 (463)
T ss_pred EEEEcCCCCcceehh-hcCCceeEEEe--cCCCceEEEeccccceEEeeeccCccccCc-----eE-EeccceEEEEecC
Confidence 999999999999987 89999999997 466778999999999999999995332211 01 1356799999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCC-eeEEEecCCCcccccCCceeEEEeCCCCC--EEEEecCCe--EEEccCCccccc
Q 000709 274 VMGGSPQLITIGADKTLAIWDTVSF-KELRRIKPVPKLACHSVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSAL 348 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~-~~l~~~~~~~~l~~H~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~~~~ 348 (1339)
. ....++++.+||+|+-+|++.. +++.+ +..|...|.+++++..-. +.++|.|+. +|++.......
T Consensus 340 ~--se~~f~~~tddG~v~~~D~R~~~~~vwt------~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~- 410 (463)
T KOG0270|consen 340 H--SENSFFVSTDDGTVYYFDIRNPGKPVWT------LKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS- 410 (463)
T ss_pred C--CceeEEEecCCceEEeeecCCCCCceeE------EEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc-
Confidence 4 5678889999999999999875 56655 689999999999998744 457888886 89987431100
Q ss_pred ccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 349 ~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
.....+ ...+..|.++.|+....++.|+..+. +++||+....++
T Consensus 411 ----------v~~~~~---~~~rl~c~~~~~~~a~~la~GG~k~~-~~vwd~~~~~~V 454 (463)
T KOG0270|consen 411 ----------VKEHSF---KLGRLHCFALDPDVAFTLAFGGEKAV-LRVWDIFTNSPV 454 (463)
T ss_pred ----------cccccc---cccceeecccCCCcceEEEecCccce-EEEeecccChhH
Confidence 000001 11257788999988899999999995 499998765444
No 168
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.9e-12 Score=158.13 Aligned_cols=371 Identities=11% Similarity=0.133 Sum_probs=241.2
Q ss_pred eEEecCCCCCEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEe-------------c-cccce
Q 000709 4 LKAFRPTNDKIVKIQLHPTHP---WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV-------------G-AKLEK 66 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~---~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~v-------------s-~d~~~ 66 (1339)
++.|.+|...++.+.+.|... ++.+++.||.|++||+..+.+++++..+..-..... . .+-..
T Consensus 50 i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~ 129 (792)
T KOG1963|consen 50 ITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSI 129 (792)
T ss_pred hhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeeccccee
Confidence 567899999999999998654 778999999999999999999998875322111111 1 11111
Q ss_pred eEeeccc--cCC----------------------CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCC
Q 000709 67 LAEGELE--HKG----------------------KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSG 122 (1339)
Q Consensus 67 Lasgs~d--~~g----------------------k~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~ 122 (1339)
+...+.+ ..+ +++..-..|.+..+. .+..+.+|+....... ........+|.-.
T Consensus 130 ~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~-~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 130 LTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKH-TSSRDITVHHTFN 207 (792)
T ss_pred eeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEE-EeeeEEEEEeccccee-eccchhhhhhccc
Confidence 1111100 000 011111113333333 4677888888775422 1122233344556
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE-EE-Eec-CCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI-FL-DLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I-~w-D~~-t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~ 199 (1339)
+++.++||+++ +++++..||.| +| |.. +........+..|.+.|+++.| +++|.+|++|+..|.+.+|.+.
T Consensus 208 ~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f-----S~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 208 ITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF-----SSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred ceeEEeccccc-eEEEeccCCcEEEEeccccccccccceEEEecccccceeEE-----ecCCceEeecccceEEEEEeec
Confidence 89999999998 88888888877 67 655 3333334456888999999999 8899999999999999999999
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce---eccc-cc-ccccccceEEEEeecc
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE---LVPK-LS-LKAHDGGVVAVELSRV 274 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~---~~~~-~~-l~gH~~~V~svafsp~ 274 (1339)
+++ +++.+.-.+.|..+. ++||+++.+....|+.|.+-...+...... +.+. .. -....+-.+.++++|
T Consensus 282 T~~--kqfLPRLgs~I~~i~---vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp- 355 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIV---VSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP- 355 (792)
T ss_pred CCC--cccccccCCeeEEEE---EcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-
Confidence 988 555557788999886 789999999999999999988755432211 1110 00 112234467788888
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCc----cc-ccCCceeEEEeCCCCCEEEEe---------cCCe----
Q 000709 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK----LA-CHSVASWCHPRAPNLDILTCV---------KDSH---- 336 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~----l~-~H~~~V~svafspdg~iLs~s---------~Dg~---- 336 (1339)
..+.++-.+..|.|.+||+.+.+.+..+..... -. .+...++.++.+..|.+++.. .||.
T Consensus 356 --r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 356 --RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred --CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEE
Confidence 567888889999999999988776655432211 11 334456778888888766543 3332
Q ss_pred EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 337 LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
+|....... . +. .......+|+...+..+..++......++++.||.+ ++|-..
T Consensus 434 FW~~n~~~k-----t-~~----L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~-KiW~~~ 487 (792)
T KOG1963|consen 434 FWQYNPNSK-----T-FI----LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDF-KIWVFT 487 (792)
T ss_pred EEEEcCCcc-----e-eE----EEEEEecCCCceeEEEEEecCcccceeEEeccCCeE-EEEEEe
Confidence 576653210 0 00 001223466664555555566555578999999997 899643
No 169
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=5.3e-14 Score=156.44 Aligned_cols=325 Identities=13% Similarity=0.085 Sum_probs=214.8
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
+.+.+|.+.|+++.||.+++||++|+.|..++||+++..-.-++-
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~----------------------------------- 94 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP----------------------------------- 94 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC-----------------------------------
Confidence 457899999999999999999999999999999998631100000
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h 163 (1339)
+. +.....||.+.|.|++|....+ ++.+|..++.++. |+.+.+...+......
T Consensus 95 ---------------------KP----I~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~ 148 (609)
T KOG4227|consen 95 ---------------------KP----IGVMEHPHRSNIFSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYVANENNN 148 (609)
T ss_pred ---------------------CC----ceeccCccccceEEEEEccCCe-eEecCCCcceeEeeecccceeeeeecccCc
Confidence 01 1233445578899999998775 9999999999877 9998776565444444
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe-EEEEEec-CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~-~i~~l~~-gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
.+.|+.+.. +|..+.+++.+.++.|.+||.+... .+..+.. .......++. +.+....+|++.+..+-+.+
T Consensus 149 ~~~VY~m~~-----~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~--F~P~~P~Li~~~~~~~G~~~ 221 (609)
T KOG4227|consen 149 RGDVYHMDQ-----HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE--FHPETPALILVNSETGGPNV 221 (609)
T ss_pred ccceeeccc-----CCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeee--ecCCCceeEEeccccCCCCc
Confidence 568999999 5678899999999999999998654 2222211 2233444443 23445678899999999999
Q ss_pred EeCCCCCcc-ceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCc--ccccCCcee
Q 000709 242 WSADHGQDS-RELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK--LACHSVASW 318 (1339)
Q Consensus 242 WDl~tg~~~-~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~--l~~H~~~V~ 318 (1339)
||++..... ....-...+......-.++.|+| .|..+++--....-.+||+-+.++.. ++.-.. -.+....+.
T Consensus 222 ~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~---~G~Q~msiRR~~~P~~~D~~S~R~~V-~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 222 FDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP---SGNQFMSIRRGKCPLYFDFISQRCFV-LKSDHNPNGYCNIKTIK 297 (609)
T ss_pred eeeccccchHHhhhccccCcccchhhhheeeCC---CCCeehhhhccCCCEEeeeeccccee-EeccCCCCcceeeeeee
Confidence 999865421 11001111222222335788999 78888887777777788987755422 221111 122233566
Q ss_pred EEEeCCCCCEEEEecCC--eEEEccCCcc-cc---cccC----ccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEE
Q 000709 319 CHPRAPNLDILTCVKDS--HIWAIEHPTY-SA---LTRP----LCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATG 388 (1339)
Q Consensus 319 svafspdg~iLs~s~Dg--~LWDi~t~~~-~~---~~~~----l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatG 388 (1339)
+++|..|..+++|+.+- .+|.+....- .. .... ..++--.....++.+|.. .+..+.|+| ..++|++.
T Consensus 298 S~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~-H~~~l~SS 375 (609)
T KOG4227|consen 298 SMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQ-HNNLLVSS 375 (609)
T ss_pred eeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecC-CcceEecc
Confidence 88888887777877664 3898753211 11 1110 001111233567888888 889999999 57878888
Q ss_pred ECCCeEEEEecCCCCC
Q 000709 389 TNVGVIISEFDPRSLP 404 (1339)
Q Consensus 389 s~DG~IlriWd~~~~p 404 (1339)
+....+ ++|.....|
T Consensus 376 GVE~~~-KlWS~~r~P 390 (609)
T KOG4227|consen 376 GVENSF-KLWSDHRLP 390 (609)
T ss_pred chhhhe-eccccccCC
Confidence 888886 899876554
No 170
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=9e-11 Score=138.90 Aligned_cols=174 Identities=21% Similarity=0.148 Sum_probs=131.4
Q ss_pred CCcchhhcccccccCccEEEeec----ccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhh
Q 000709 942 MGYATEALHLPGISKRLEFDLAM----QSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKF 1017 (1339)
Q Consensus 942 ~G~~e~Al~~~~d~~~~~f~La~----~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017 (1339)
.|-.|||-.++-| --|-|||+ ++||.=+-+++.+.-.. +.+.+ -+|.-..++..-...
T Consensus 747 ~g~feeaek~yld--~drrDLAielr~klgDwfrV~qL~r~g~~--d~dD~--------------~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLD--ADRRDLAIELRKKLGDWFRVYQLIRNGGS--DDDDE--------------GKEDAFRNIGETFAE 808 (1189)
T ss_pred hcchhHhhhhhhc--cchhhhhHHHHHhhhhHHHHHHHHHccCC--CcchH--------------HHHHHHHHHHHHHHH
Confidence 3778999888877 34556665 57899999998863111 11111 133333444444456
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHH-
Q 000709 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA- 1096 (1339)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~- 1096 (1339)
..+|..-.+++...|+.+--.+||.+...|+ +++.|+..+ ..+-+-|.+|+++-...|.- .-|-.|+
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~---------~LE~la~~L--pe~s~llp~~a~mf~svGMC-~qAV~a~L 876 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFG---------ELEVLARTL--PEDSELLPVMADMFTSVGMC-DQAVEAYL 876 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhh---------hHHHHHHhc--CcccchHHHHHHHHHhhchH-HHHHHHHH
Confidence 6799999999999999999999999996666 666666543 46777888999999999987 7788884
Q ss_pred HcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHHHHHHHhhhcC
Q 000709 1097 ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKEVD 1145 (1339)
Q Consensus 1097 ~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~~~ 1145 (1339)
-.++...++..-.+-+++.||+-+|+.|..+++..++.+-+..|-....
T Consensus 877 r~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~ 925 (1189)
T KOG2041|consen 877 RRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADAN 925 (1189)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcc
Confidence 8899999999999999999999999999999998888887777644433
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.9e-14 Score=152.77 Aligned_cols=287 Identities=16% Similarity=0.205 Sum_probs=187.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
-.|++|.+.|+++.|..+++ |.+|..-|.|++|++.+...+..+..++...+..+. +.++...-
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tq------------- 73 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQ------------- 73 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhc-------------
Confidence 46789999999999998875 889999999999999998877777654444443333 22222111
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCC-----CCC---eEEEEEecCcEE--EEEecCC
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-----KGR---HFLVICCVNKAI--FLDLVTM 152 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafsp-----dg~---~lLasgs~dg~I--~wD~~t~ 152 (1339)
| .|..+.+|++..+..+.. +.-.++++.|.+ +++ .+++.-+...-. +-|.-..
T Consensus 74 --g-------Rd~~L~lw~ia~s~~i~i--------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~ 136 (323)
T KOG0322|consen 74 --G-------RDPLLILWTIAYSAFISI--------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDT 136 (323)
T ss_pred --C-------CCceEEEEEccCcceEEE--------eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCcc
Confidence 2 488999999987654421 122333444433 221 122221111111 1122111
Q ss_pred ceeecc--ccccCCCCeEEEEEeeccccCCC--CEEEEEECCCcEEEEECCCCeEEEEEe---------cCCCCCeeEEE
Q 000709 153 RGRDIP--KQELDNKSLVCMEFLSRSAVGDV--PLVAFGSSDGVIRVLSMISWKLVRRYT---------GGHKGSISCLM 219 (1339)
Q Consensus 153 ~~~~v~--~~~~h~~~V~~vaf~P~s~Spdg--~~LasGs~DgtIrIWDl~t~~~i~~l~---------~gH~~~V~sl~ 219 (1339)
...++. ......+.++|..+- ..++ -+++.|..+|.+.+||+.++..+..+. ..|..+|+++.
T Consensus 137 tqv~i~dd~~~~Klgsvmc~~~~----~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsld 212 (323)
T KOG0322|consen 137 TQVQIADDSERSKLGSVMCQDKD----HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLD 212 (323)
T ss_pred ceeEccCchhccccCceeeeecc----ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeee
Confidence 111111 112335678888762 1223 357788899999999999874333221 26999999997
Q ss_pred EeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 220 TFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 220 wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
+.+.-+.=++|+.+..+..|+++.....-.. ..++.-..-+|..+.+.| |++.++|++.|++||||+.++..
T Consensus 213 ---yas~~~rGisgga~dkl~~~Sl~~s~gslq~--~~e~~lknpGv~gvrIRp---D~KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 213 ---YASSCDRGISGGADDKLVMYSLNHSTGSLQI--RKEITLKNPGVSGVRIRP---DGKILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred ---echhhcCCcCCCccccceeeeeccccCcccc--cceEEecCCCccceEEcc---CCcEEeecccCCcEEEEEeccCC
Confidence 4444445567888888999988754221111 111222345688999999 89999999999999999999888
Q ss_pred eEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEc
Q 000709 300 ELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAI 340 (1339)
Q Consensus 300 ~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi 340 (1339)
++.. +..|...|.+++|+|+..++ ++|+|.+ +|++
T Consensus 285 pLAV------LkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAV------LKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred chhh------hhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7766 78999999999999996655 7899997 7985
No 172
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.57 E-value=1.4e-13 Score=151.59 Aligned_cols=268 Identities=16% Similarity=0.202 Sum_probs=179.6
Q ss_pred cCCCCeeeeeeCC----CCCeEEEEEecCcEEEEEec-CCceeeccc--cccCCCCeEEEEEeeccccC-CCCEEEEEEC
Q 000709 118 NVTSGFASPPPST----KGRHFLVICCVNKAIFLDLV-TMRGRDIPK--QELDNKSLVCMEFLSRSAVG-DVPLVAFGSS 189 (1339)
Q Consensus 118 ~~~~~V~slafsp----dg~~lLasgs~dg~I~wD~~-t~~~~~v~~--~~~h~~~V~~vaf~P~s~Sp-dg~~LasGs~ 189 (1339)
.+...|..++|++ +....+++.+.+...++... .+..+.+.. ...|......++|... +. ...+++.|+.
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd--~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYD--SNTGNPFLAAGGY 113 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEec--CCCCCeeEEeecc
Confidence 3366777888763 33347777777777666332 221111111 1235667777888654 22 2578899999
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEE
Q 000709 190 DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAV 269 (1339)
Q Consensus 190 DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sv 269 (1339)
-|.|+|.|+.++++...+. +|.+.|+.+. +.+.+.++++++|.|.+||+|++++..|+..+ --+.||.+.|.++
T Consensus 114 ~GvIrVid~~~~~~~~~~~-ghG~sINeik--~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf---GG~egHrdeVLSv 187 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSKNYR-GHGGSINEIK--FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF---GGVEGHRDEVLSV 187 (385)
T ss_pred eeEEEEEecchhhhcccee-ccCccchhhh--cCCCCCcEEEEecCCceEEEEeccCCeEEEEe---cccccccCcEEEE
Confidence 9999999999999999998 9999999998 24445689999999999999999999987654 2368999999999
Q ss_pred EeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecC----------------------CCcccccCCceeEEEeCCCCC
Q 000709 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP----------------------VPKLACHSVASWCHPRAPNLD 327 (1339)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~----------------------~~~l~~H~~~V~svafspdg~ 327 (1339)
.|++ ++.+|+++|.|.+|++|++...+....++. ..+-.-|.+.|-|+.|--+ -
T Consensus 188 D~~~---~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd-~ 263 (385)
T KOG1034|consen 188 DFSL---DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGD-F 263 (385)
T ss_pred EEcC---CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhh-h
Confidence 9999 889999999999999999984321111110 0123457777777777542 2
Q ss_pred EEEEecCCe--EEEccCCcccccccCccccCCCCC----CeEEccCCcccEEEEEEecC-CCcEEEEEECCCeEEEEecC
Q 000709 328 ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVP----PQVLAHHKKLRVYCMVAHSL-QPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 328 iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~----~~tl~~~~~~~I~~la~sp~-~~~lLatGs~DG~IlriWd~ 400 (1339)
+|+-|-++. .|.... +.+.+........ ...+... ...||-+.|.-+ -+..||.|...|.| .+||+
T Consensus 264 ilSkscenaI~~w~pgk-----l~e~~~~vkp~es~~Ti~~~~~~~-~c~iWfirf~~d~~~~~la~gnq~g~v-~vwdL 336 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGK-----LEESIHNVKPPESATTILGEFDYP-MCDIWFIRFAFDPWQKMLALGNQSGKV-YVWDL 336 (385)
T ss_pred eeecccCceEEEEecch-----hhhhhhccCCCccceeeeeEeccC-ccceEEEEEeecHHHHHHhhccCCCcE-EEEEC
Confidence 456555555 576631 1112111111111 1222222 236888776642 35679999999998 69998
Q ss_pred CCCC
Q 000709 401 RSLP 404 (1339)
Q Consensus 401 ~~~p 404 (1339)
+..+
T Consensus 337 ~~~e 340 (385)
T KOG1034|consen 337 DNNE 340 (385)
T ss_pred CCCC
Confidence 8543
No 173
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.56 E-value=4.3e-13 Score=167.03 Aligned_cols=357 Identities=15% Similarity=0.148 Sum_probs=205.0
Q ss_pred eeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc-------EEEEEeccCccceEEe--ccccceeEeecc
Q 000709 3 RLKAFRPTNDKIVKIQLHPTH-PWLVTADASDHVSVWNWEHRQ-------VIYELKAGGVDQRRLV--GAKLEKLAEGEL 72 (1339)
Q Consensus 3 ~l~~L~gHs~~V~~vafSPdg-~~LaSgs~DGtIrIWDl~tg~-------~l~~~~~~~~~~i~~v--s~d~~~Lasgs~ 72 (1339)
.+.+|..|+..|..++.++.. .+++||+.||+|+|||...-. ...++.. ....+..+ +..+..+|.++
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t- 1117 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVST- 1117 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEc-
Confidence 377889999999999998776 899999999999999976311 1111210 11122222 25555665553
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCccc--cccc-cccccccCCC-CeeeeeeCCCCCe-EEEEEecC-cEEE
Q 000709 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRA--AAAE-APTAVSNVTS-GFASPPPSTKGRH-FLVICCVN-KAIF 146 (1339)
Q Consensus 73 d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~--l~~~-~~~~~~~~~~-~V~slafspdg~~-lLasgs~d-g~I~ 146 (1339)
.||.|++.++..... .... ......+..+ .|..-+|....+. .++.+... +++.
T Consensus 1118 --------------------~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1118 --------------------KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred --------------------CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence 588888887765211 1100 0111111122 3333445443322 55555544 4558
Q ss_pred EEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCC
Q 000709 147 LDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSG 226 (1339)
Q Consensus 147 wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spd 226 (1339)
||..+.............+.|++++. +|.++|++.|+..|.+.+||++-+..+.....++..+++.+..+.+.+.
T Consensus 1178 ~D~r~~~~~w~lk~~~~hG~vTSi~i-----dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~ 1252 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVI-----DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQ 1252 (1431)
T ss_pred ecchhhhhHHhhhcCccccceeEEEe-----cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCC
Confidence 89887644333333455679999999 7889999999999999999999988888887677788998843334444
Q ss_pred CCEEEEEe--CCCcEEEEeCCCCCccceeccc-----cc--cc------ccccceEEEEeeccCCCCCEEEEEeCCCcEE
Q 000709 227 EALLVSGG--SDGLLILWSADHGQDSRELVPK-----LS--LK------AHDGGVVAVELSRVMGGSPQLITIGADKTLA 291 (1339)
Q Consensus 227 g~~LaSgS--~DgtVrVWDl~tg~~~~~~~~~-----~~--l~------gH~~~V~svafsp~~~dg~~LaSgs~Dg~Ir 291 (1339)
....++++ ..+.|.+|++.+|.+...+... .. +. .+.-......+. +.+..+.+|+.|..|+
T Consensus 1253 ~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~---~~~~~~ltggsd~kIR 1329 (1431)
T KOG1240|consen 1253 ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVC---EKNGFLLTGGSDMKIR 1329 (1431)
T ss_pred CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecc---cCCceeeecCCcccee
Confidence 45555544 4788999999998654332110 00 00 111112222332 2567999999999999
Q ss_pred EEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecC--CeE-EEccCCcccccccCccccCCCCCCeEEccCC
Q 000709 292 IWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD--SHI-WAIEHPTYSALTRPLCELSSLVPPQVLAHHK 368 (1339)
Q Consensus 292 IWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~D--g~L-WDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~ 368 (1339)
.||........ +. ..+-+........+.+-.++.++.- -.+ .....+..... +....... .+...-..|+
T Consensus 1330 ~wD~~~p~~ss-~~----~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~-~~~~~~~~-~~~~ps~~H~ 1402 (1431)
T KOG1240|consen 1330 KWDPTRPEISS-YA----VPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEAL-RENQKLRP-GPSDPSTYHH 1402 (1431)
T ss_pred eccCCCccccc-cc----ccCccccccccchhccccccCCCccchhhhhhhhhcCchhhc-cccccccc-CCCCCccccc
Confidence 99987544221 10 1222222222223333223333211 111 11111100000 00000000 0111123455
Q ss_pred cccEEEEEEecCCCcEEEEEECCCeEEEEe
Q 000709 369 KLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 369 ~~~I~~la~sp~~~~lLatGs~DG~IlriW 398 (1339)
+ .|++|++.....-+|++++.||.| ++|
T Consensus 1403 d-~Itdma~~~~~q~llvs~s~dG~I-kiW 1430 (1431)
T KOG1240|consen 1403 D-PITDMATLKSEQPLLVSSSRDGVI-KIW 1430 (1431)
T ss_pred c-hhhhhhhhccCccEEEEecCCCee-eec
Confidence 5 899999988777789999999997 899
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.56 E-value=2.2e-13 Score=152.81 Aligned_cols=212 Identities=17% Similarity=0.173 Sum_probs=161.4
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-------~~i~~l~~gH~~~V~sl~wf~~spdg~ 228 (1339)
..+...+|...|..++|.|. +.+.|++||.|.+|.||++-.+ +.+..+. ||...|.-+.|. +.-.+
T Consensus 73 ~~P~v~GHt~~vLDi~w~Pf----nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~-gH~rrVg~V~wH--PtA~N 145 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPF----NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELY-GHQRRVGLVQWH--PTAPN 145 (472)
T ss_pred CCCCccCccccccccccCcc----CCceeecCCCCceEEEEECCCcccccCcccceEEEe-ecceeEEEEeec--ccchh
Confidence 45667899999999999763 5678999999999999998643 4466666 999999999973 44567
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCC
Q 000709 229 LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP 308 (1339)
Q Consensus 229 ~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1339)
.|+|++.|.+|.+||+.+|..+-+ +. |.+.|+++.|+. +|.+|++.+.|+.|||||.++++.+..
T Consensus 146 VLlsag~Dn~v~iWnv~tgeali~------l~-hpd~i~S~sfn~---dGs~l~TtckDKkvRv~dpr~~~~v~e----- 210 (472)
T KOG0303|consen 146 VLLSAGSDNTVSIWNVGTGEALIT------LD-HPDMVYSMSFNR---DGSLLCTTCKDKKVRVIDPRRGTVVSE----- 210 (472)
T ss_pred hHhhccCCceEEEEeccCCceeee------cC-CCCeEEEEEecc---CCceeeeecccceeEEEcCCCCcEeee-----
Confidence 999999999999999999986544 44 999999999998 899999999999999999999998876
Q ss_pred cccccCCc-eeEEEeCCCCCEEEEecCC----e--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCC
Q 000709 309 KLACHSVA-SWCHPRAPNLDILTCVKDS----H--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQ 381 (1339)
Q Consensus 309 ~l~~H~~~-V~svafspdg~iLs~s~Dg----~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~ 381 (1339)
..+|.+. -..+.|-.+|.+++.|... . |||-.+... ++....-+.+..|.---|.++.
T Consensus 211 -~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~e--------------P~~~~elDtSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 211 -GVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEE--------------PIALQELDTSNGVLLPFYDPDT 275 (472)
T ss_pred -cccccCCCcceeEEeccCceeeeccccccccceeccCcccccC--------------cceeEEeccCCceEEeeecCCC
Confidence 2456543 2356677888888766433 2 898775321 1222222223345555677766
Q ss_pred CcEEEEEECCCeEEEEecCCCCCC
Q 000709 382 PHLVATGTNVGVIISEFDPRSLPA 405 (1339)
Q Consensus 382 ~~lLatGs~DG~IlriWd~~~~p~ 405 (1339)
+.+..+|-.|+.| |.|.+...++
T Consensus 276 ~ivYl~GKGD~~I-RYyEit~d~P 298 (472)
T KOG0303|consen 276 SIVYLCGKGDSSI-RYFEITNEPP 298 (472)
T ss_pred CEEEEEecCCcce-EEEEecCCCc
Confidence 7777888899997 8888765443
No 175
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.55 E-value=4.2e-13 Score=145.53 Aligned_cols=272 Identities=16% Similarity=0.142 Sum_probs=185.2
Q ss_pred CeeeeeeC--CCCCeEEEEEecC----cEE---EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 122 GFASPPPS--TKGRHFLVICCVN----KAI---FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 122 ~V~slafs--pdg~~lLasgs~d----g~I---~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
.++++.|+ ++.+..|+.|+.. ..+ .+|..+++...... ..|.-+++.+.|.|.+..-...+|++++ ..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~ 122 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLLATSS--DF 122 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC-CCCCCCccceEecCCccccCcchhhccc--Ce
Confidence 45667776 4556678888632 222 33555555433322 4677899999998743212224566653 46
Q ss_pred EEEEECCCC--eE--EEEE----ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccccc
Q 000709 193 IRVLSMISW--KL--VRRY----TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1339)
Q Consensus 193 IrIWDl~t~--~~--i~~l----~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~ 264 (1339)
+|+|.+... +. ...+ ...+..++++..| .--+.++|.++|-|.+..|||+.++..-. .+..+..|+.
T Consensus 123 LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igtSSiDTTCTiWdie~~~~~~---vkTQLIAHDK 197 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGTSSIDTTCTIWDIETGVSGT---VKTQLIAHDK 197 (364)
T ss_pred EEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEeecccCeEEEEEEeeccccc---eeeEEEecCc
Confidence 999998732 11 1111 1246678999988 45567899999999999999999873211 1335789999
Q ss_pred ceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EE-EEecCCe---EEE
Q 000709 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-IL-TCVKDSH---IWA 339 (1339)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iL-s~s~Dg~---LWD 339 (1339)
.|..++|.. +..+.+++.|.||+||+||++..+....+-.. .........++|+++.. ++ +-..|+. |-|
T Consensus 198 EV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~---p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 198 EVYDIAFLK--GSRDVFASVGADGSVRMFDLRSLEHSTIIYED---PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ceeEEEecc--CccceEEEecCCCcEEEEEecccccceEEecC---CCCCCcceeeccCcCCchHHhhhhcCCceEEEEE
Confidence 999999998 46689999999999999999976654433111 11134556788887654 33 4455553 788
Q ss_pred ccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCce
Q 000709 340 IEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHS 419 (1339)
Q Consensus 340 i~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~~~~~s~~~s 419 (1339)
++.. ..++..+.+|.. .|++++|.|.....|+++++|..+ .+||+...+.- ...+..
T Consensus 273 iR~P--------------~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~~-------~~~dPi 329 (364)
T KOG0290|consen 273 IRVP--------------CTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPRE-------NGEDPI 329 (364)
T ss_pred ecCC--------------CcceehhhcCcc-cccceEecCCCCceeeecCCcceE-EEEeccccccc-------CCCCch
Confidence 8854 245667888888 899999999999999999999998 49999876541 112344
Q ss_pred EEEEecCeEE
Q 000709 420 AVYIVERELK 429 (1339)
Q Consensus 420 ~~~~~~~~l~ 429 (1339)
+.|..++++.
T Consensus 330 lay~a~~EVN 339 (364)
T KOG0290|consen 330 LAYTAGGEVN 339 (364)
T ss_pred hhhhccceee
Confidence 5677777764
No 176
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.53 E-value=1.6e-13 Score=156.47 Aligned_cols=262 Identities=17% Similarity=0.153 Sum_probs=181.2
Q ss_pred CCCCeeeeeeCCCCC-eEEEEEecCcEE-EEEecC--CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEE
Q 000709 119 VTSGFASPPPSTKGR-HFLVICCVNKAI-FLDLVT--MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIR 194 (1339)
Q Consensus 119 ~~~~V~slafspdg~-~lLasgs~dg~I-~wD~~t--~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIr 194 (1339)
+...|++++|+|... .++++|...|.| +||+.+ .....+..+..|..+|.++.|+|. +...+++.|.||+||
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~----n~s~i~ssSyDGtiR 260 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPA----NTSQIYSSSYDGTIR 260 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCC----ChhheeeeccCceee
Confidence 467899999999765 689999999999 888852 222344556788999999999663 456789999999999
Q ss_pred EEECCCCeEEEEEec-CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 195 VLSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 195 IWDl~t~~~i~~l~~-gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
+-|++....-..+.. .....+.++. ++.+...++.+..=|...+||.+++.... ..+.-|+..|++|+++|
T Consensus 261 ~~D~~~~i~e~v~s~~~d~~~fs~~d---~~~e~~~vl~~~~~G~f~~iD~R~~~s~~-----~~~~lh~kKI~sv~~NP 332 (498)
T KOG4328|consen 261 LQDFEGNISEEVLSLDTDNIWFSSLD---FSAESRSVLFGDNVGNFNVIDLRTDGSEY-----ENLRLHKKKITSVALNP 332 (498)
T ss_pred eeeecchhhHHHhhcCccceeeeecc---ccCCCccEEEeecccceEEEEeecCCccc-----hhhhhhhcccceeecCC
Confidence 999986533222210 1222333333 66677777777777799999999876422 23567888999999999
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCC-CEEEEecCCe--EEEccCCccccccc
Q 000709 274 VMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDSH--IWAIEHPTYSALTR 350 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg-~iLs~s~Dg~--LWDi~t~~~~~~~~ 350 (1339)
. ...+|+|+|.|++.+|||++.-..-.. |.-....|...|.+..|||.+ .+++.+.|.+ |||...- +....
T Consensus 333 ~--~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~--sa~~~ 406 (498)
T KOG4328|consen 333 V--CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCI--SAKDE 406 (498)
T ss_pred C--CchheeecccCcceeeeehhhhcCCCC--cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccc--cccCC
Confidence 5 667999999999999999985432221 122246799999999999984 5778888885 8987410 00111
Q ss_pred CccccCCCCCCeEEccCCc----ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCcccc
Q 000709 351 PLCELSSLVPPQVLAHHKK----LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPL 409 (1339)
Q Consensus 351 ~l~~~~~~~~~~tl~~~~~----~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~ 409 (1339)
++ .++..... ....-..|+| +-++|++|-.-..| -++|......++.+
T Consensus 407 p~---------~~I~Hn~~t~RwlT~fKA~W~P-~~~li~vg~~~r~I-Dv~~~~~~q~v~el 458 (498)
T KOG4328|consen 407 PL---------GTIPHNNRTGRWLTPFKAAWDP-DYNLIVVGRYPRPI-DVFDGNGGQMVCEL 458 (498)
T ss_pred cc---------ceeeccCcccccccchhheeCC-CccEEEEeccCcce-eEEcCCCCEEeeec
Confidence 11 11111100 1234568999 67789999888776 68887766555543
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.53 E-value=2e-14 Score=172.28 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=203.7
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
++.|.||.+.|+|+.|...|.++++|+.|..|+||..+++.++.+.. +|...+.-+. .+...+++++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS---------- 251 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAAS---------- 251 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcc----------
Confidence 56789999999999999999999999999999999999999999887 5555555444 2233344443
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc-
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK- 159 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~- 159 (1339)
.|..|++|.+..+..+ ..+.+| ++.|++++|+|-. +.++||++ +||++-.-...++.
T Consensus 252 -----------~D~vIrvWrl~~~~pv----svLrgh-tgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp 310 (1113)
T KOG0644|consen 252 -----------NDKVIRVWRLPDGAPV----SVLRGH-TGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRP 310 (1113)
T ss_pred -----------cCceEEEEecCCCchH----HHHhcc-ccceeeeccCccc-----cCCCCCceEeccccccccccCCCC
Confidence 5889999999998775 456666 9999999999954 57888888 56776211111111
Q ss_pred -cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 160 -QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 160 -~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
.....+-+..+.| ..++..++||+.|+.-+.|.+.... .|...+.-+. ..+....+.+++-.+..
T Consensus 311 ~~~~~~~~~~s~~~-----~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t--~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILF-----ENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVT--RSSDLSSIVVTARNDHR 376 (1113)
T ss_pred CCcccccceeeeec-----cccccccccccCCcccccchhhHhh-------hhccceEEEe--ccccccccceeeeeeeE
Confidence 1112345666666 5677889999999999998765321 1211111111 01112246677778889
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
+++|++.+|...+. +.+|...+..+.+||. +.....+++.||...|||+-.|.+++... .+|.. +.
T Consensus 377 ~~vwnl~~g~l~H~------l~ghsd~~yvLd~Hpf--n~ri~msag~dgst~iwdi~eg~pik~y~-----~gh~k-l~ 442 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHN------LMGHSDEVYVLDVHPF--NPRIAMSAGYDGSTIIWDIWEGIPIKHYF-----IGHGK-LV 442 (1113)
T ss_pred eeeeecccchhhhh------hcccccceeeeeecCC--CcHhhhhccCCCceEeeecccCCcceeee-----cccce-ee
Confidence 99999999987654 6899999999999995 67778899999999999999998887752 44544 44
Q ss_pred EEEeCCCCCEEEEecCC-eEEEccCC
Q 000709 319 CHPRAPNLDILTCVKDS-HIWAIEHP 343 (1339)
Q Consensus 319 svafspdg~iLs~s~Dg-~LWDi~t~ 343 (1339)
.-.||++|.-++++.|. .++-+.++
T Consensus 443 d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 443 DGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred ccccCCCCceEecCCCCCceEEeccC
Confidence 67899999988877664 56666554
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.52 E-value=9.5e-11 Score=136.70 Aligned_cols=329 Identities=24% Similarity=0.367 Sum_probs=223.7
Q ss_pred eEEecCCCC-CEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-CcEEEEEeccCccceEEec--cccceeEeeccccCC
Q 000709 4 LKAFRPTND-KIVKIQL-HPTHP-WLVTADA-SDHVSVWNWEH-RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKG 76 (1339)
Q Consensus 4 l~~L~gHs~-~V~~vaf-SPdg~-~LaSgs~-DGtIrIWDl~t-g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~g 76 (1339)
+..+.++.. .+..+.+ ++++. .++..+. |+.+++||... ...+..+. .|...+..+. +++..++.+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~---- 175 (466)
T COG2319 101 IKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSS---- 175 (466)
T ss_pred EEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCC----
Confidence 455666443 7888888 88888 5555444 99999999987 66666666 4445555443 66766665531
Q ss_pred CccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee
Q 000709 77 KPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR 155 (1339)
Q Consensus 77 k~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~ 155 (1339)
.++.+++|+....... ....+ |...+.++.|+|+++.++++++.|+.+ .||...+...
T Consensus 176 ----------------~~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 176 ----------------LDGTIKLWDLRTGKPL----STLAG-HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred ----------------CCCceEEEEcCCCceE----Eeecc-CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEE
Confidence 2899999999985443 22233 488899999999987455555788877 5676644332
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~-i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS 234 (1339)
.. ....|.... ...| ++++.++++++.|+.+++||...... ...+ .+|...|.++. +.|++..+++++
T Consensus 235 ~~-~~~~~~~~~-~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~---~~~~~~~~~~~~ 303 (466)
T COG2319 235 RS-TLSGHSDSV-VSSF-----SPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVA---FSPDGKLLASGS 303 (466)
T ss_pred ee-ecCCCCcce-eEeE-----CCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEE---ECCCCCEEEEee
Confidence 21 355665554 3367 67788899999999999999986654 4454 48899999996 677888888899
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE-eCCCcEEEEECCCCeeEEEecCCCccccc
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI-GADKTLAIWDTVSFKELRRIKPVPKLACH 313 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg-s~Dg~IrIWDl~t~~~l~~~~~~~~l~~H 313 (1339)
.|+.+++||........... ...|...+..+.| +. ++..++.+ ..|+.+++|++......... ..+
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------~~~ 370 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLT----LKGHEGPVSSLSF-SP--DGSLLVSGGSDDGTIRLWDLRTGKPLKTL------EGH 370 (466)
T ss_pred CCCcEEEEEcCCCceEEEee----ecccCCceEEEEE-CC--CCCEEEEeecCCCcEEeeecCCCceeEEe------cCC
Confidence 99999999988776544321 3467778999999 51 33455555 68899999999887622221 111
Q ss_pred CCceeEEEeCCCCCEE-E-EecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEE
Q 000709 314 SVASWCHPRAPNLDIL-T-CVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1339)
Q Consensus 314 ~~~V~svafspdg~iL-s-~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs 389 (1339)
..+..+.+++ ...+ . +..++. +|+....... .....+. ..+....+++ .+..++.++
T Consensus 371 -~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 431 (466)
T COG2319 371 -SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL---------------RNLDGHT-SRVTSLDFSP-DGKSLASGS 431 (466)
T ss_pred -ceEEEEEECC-CCCEEEEecCCCceEEEecccCeee---------------eeccCCC-CcEEEEEECC-CCcEEEEec
Confidence 1277888888 4433 3 456664 8998864210 0111110 3788888888 566688888
Q ss_pred CCCeEEEEecCCC
Q 000709 390 NVGVIISEFDPRS 402 (1339)
Q Consensus 390 ~DG~IlriWd~~~ 402 (1339)
.++.+ ++|+...
T Consensus 432 ~~~~~-~~~~~~~ 443 (466)
T COG2319 432 SDNTI-RLWDLKT 443 (466)
T ss_pred CCCcE-EEEeccC
Confidence 88886 7998765
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.6e-13 Score=149.22 Aligned_cols=246 Identities=16% Similarity=0.246 Sum_probs=158.2
Q ss_pred CCeEEEEEecCcEE-EEEecCCceeeccccccCC-CCeEEEEEeeccccCCCCEEEEEE----CCCcEEEEECCCCeE-E
Q 000709 132 GRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDN-KSLVCMEFLSRSAVGDVPLVAFGS----SDGVIRVLSMISWKL-V 204 (1339)
Q Consensus 132 g~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~-~~V~~vaf~P~s~Spdg~~LasGs----~DgtIrIWDl~t~~~-i 204 (1339)
+.+.+.+|+.||.| .||+++...........+. .+..|++- .-.++.+++|+ .|-.+.+||++..+. +
T Consensus 83 s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~-----nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l 157 (376)
T KOG1188|consen 83 SPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDL-----NCKKNIIACGTELTRSDASVVLWDVRSEQQLL 157 (376)
T ss_pred CCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeec-----cCcCCeEEeccccccCceEEEEEEeccccchh
Confidence 34467778888777 5587765443333333343 45666666 44677788775 466899999998876 7
Q ss_pred EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE
Q 000709 205 RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1339)
Q Consensus 205 ~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg 284 (1339)
+.+...|...|++++ |.+.+.++|+|||.||-|.++|+.....-. .......|...|.++.|+. +.-+.|.+-
T Consensus 158 ~~~~eSH~DDVT~lr--FHP~~pnlLlSGSvDGLvnlfD~~~d~EeD---aL~~viN~~sSI~~igw~~--~~ykrI~cl 230 (376)
T KOG1188|consen 158 RQLNESHNDDVTQLR--FHPSDPNLLLSGSVDGLVNLFDTKKDNEED---ALLHVINHGSSIHLIGWLS--KKYKRIMCL 230 (376)
T ss_pred hhhhhhccCcceeEE--ecCCCCCeEEeecccceEEeeecCCCcchh---hHHHhhcccceeeeeeeec--CCcceEEEE
Confidence 778779999999998 356678999999999999999998653211 2223456788899999997 233578899
Q ss_pred eCCCcEEEEECCCCeeEEEecCCCcccccCC---ce-eEEEeC-CCC-C-EE-EEe--cCCeEEEccCCcccccccCccc
Q 000709 285 GADKTLAIWDTVSFKELRRIKPVPKLACHSV---AS-WCHPRA-PNL-D-IL-TCV--KDSHIWAIEHPTYSALTRPLCE 354 (1339)
Q Consensus 285 s~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~---~V-~svafs-pdg-~-iL-s~s--~Dg~LWDi~t~~~~~~~~~l~~ 354 (1339)
+...+..+|+++.+.+...+........-.. ++ +-+..+ |.+ . ++ +++ ..++++-+... ..
T Consensus 231 TH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~---------~s 301 (376)
T KOG1188|consen 231 THMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDT---------SS 301 (376)
T ss_pred EccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeec---------cc
Confidence 9999999999998886555432211110000 00 111111 322 2 22 222 22234433311 01
Q ss_pred cCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 355 LSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 355 ~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
.........+.+++...|.++.|.. .+.++++|+.||.+ .+|..
T Consensus 302 ~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l-~~Wk~ 345 (376)
T KOG1188|consen 302 GSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLL-QAWKV 345 (376)
T ss_pred ccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceE-EEEec
Confidence 1122334556665655788888875 67889999999997 79963
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2.7e-13 Score=158.36 Aligned_cols=257 Identities=14% Similarity=0.192 Sum_probs=183.2
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CcEEEEEeccCccceEEec--cccceeEeeccccC
Q 000709 6 AFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--------RQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHK 75 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~t--------g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~ 75 (1339)
+++.|.+.|+.++|+|..+-|++++.||+|++|+++. -+.+.+|. .|...|.+++ .+++.+.+|+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-aH~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-AHEGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-cccCceEEEEecCCceEEEeec----
Confidence 7889999999999999999999999999999999932 24577777 5566666666 6777777775
Q ss_pred CCccccccCCceEEEEEcCCeEEEEEcCCcccc------ccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEE-EE
Q 000709 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA------AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LD 148 (1339)
Q Consensus 76 gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l------~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~-wD 148 (1339)
.||+|+.|++..+.-- ......+.|| ++.|+.+++|+... .|++|+.|++++ |+
T Consensus 364 -----------------~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~-~Llscs~DgTvr~w~ 424 (577)
T KOG0642|consen 364 -----------------IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKD-RLLSCSSDGTVRLWE 424 (577)
T ss_pred -----------------cCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeeccccc-ceeeecCCceEEeec
Confidence 6999999976532211 1223445565 88999999999887 799999999995 44
Q ss_pred ecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCCeeEEEEee
Q 000709 149 LVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG------HKGSISCLMTFM 222 (1339)
Q Consensus 149 ~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~g------H~~~V~sl~wf~ 222 (1339)
...... +........+....+.|- +.+-...++...-+.-.++++.....+..+... ....+..+.
T Consensus 425 ~~~~~~-~~f~~~~e~g~Plsvd~~----ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV--- 496 (577)
T KOG0642|consen 425 PTEESP-CTFGEPKEHGYPLSVDRT----SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV--- 496 (577)
T ss_pred cCCcCc-cccCCccccCCcceEeec----cchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE---
Confidence 443322 222223335567777772 111122222223333344555555444444211 112344443
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 223 ~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
.+|++.+.+++..|+.|+++|..++..++. ...|...|+++++.| ++.+|++++.|+.+++|.+....++.
T Consensus 497 s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s------~~a~~~svtslai~~---ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 497 SHPTADITFTAHEDRSIRFFDNKTGKILHS------MVAHKDSVTSLAIDP---NGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred ecCCCCeeEecccCCceecccccccccchh------eeeccceecceeecC---CCceEEeecCCceeehhhccchheee
Confidence 578889999999999999999999987654 678999999999999 89999999999999999998777765
Q ss_pred E
Q 000709 303 R 303 (1339)
Q Consensus 303 ~ 303 (1339)
.
T Consensus 568 e 568 (577)
T KOG0642|consen 568 E 568 (577)
T ss_pred c
Confidence 5
No 181
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.2e-12 Score=145.03 Aligned_cols=263 Identities=10% Similarity=0.085 Sum_probs=178.4
Q ss_pred eEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCcc--ceEEec--cccceeEeeccccCCC
Q 000709 4 LKAFRPTNDKIVKIQLHP--THPWLVTADASDHVSVWNWEHRQVIYELKAGGVD--QRRLVG--AKLEKLAEGELEHKGK 77 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSP--dg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~--~i~~vs--~d~~~Lasgs~d~~gk 77 (1339)
+..|++|...++.+.|.. ....+.+|+.||+|++||+++...+..+...... .-.+++ -..+.++.|..-.
T Consensus 63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~--- 139 (376)
T KOG1188|consen 63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT--- 139 (376)
T ss_pred hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc---
Confidence 678999999999999987 3458889999999999999988776666543322 222223 2455666553211
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee-
Q 000709 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR- 155 (1339)
Q Consensus 78 ~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~- 155 (1339)
+ .+-.+.+||++..+.. .......|.+.|++++|+|+.+.+|++|+.||.+ ++|.......
T Consensus 140 -------~-------s~A~v~lwDvR~~qq~---l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD 202 (376)
T KOG1188|consen 140 -------R-------SDASVVLWDVRSEQQL---LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED 202 (376)
T ss_pred -------c-------CceEEEEEEeccccch---hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh
Confidence 1 3667999999988663 2455566688899999999999999999999999 5587654322
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-----------CCCCeeEEEEeeeC
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG-----------HKGSISCLMTFMAS 224 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~g-----------H~~~V~sl~wf~~s 224 (1339)
.+.....+...|.++.|+ ++.-+.|.+-+...+..+|+++.+.+...+... ...++-.. ..+
T Consensus 203 aL~~viN~~sSI~~igw~----~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~---~~~ 275 (376)
T KOG1188|consen 203 ALLHVINHGSSIHLIGWL----SKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE---HSP 275 (376)
T ss_pred hHHHhhcccceeeeeeee----cCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec---ccC
Confidence 222234567789999996 444467888899999999999987655444311 01111111 124
Q ss_pred CCCCEEEEEeC-CCcEEEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 225 SGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 225 pdg~~LaSgS~-DgtVrVWDl~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
.+...++.++. -+...++-+..........+...+.+ |..-|.++.|.. .+.++.|||.||.+.+|...
T Consensus 276 ~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~---~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 276 GDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV---KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred CCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc---ccceeeccCCCceEEEEecC
Confidence 45556655555 56666665542111111123334555 777788888876 67899999999999999963
No 182
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.45 E-value=1.1e-11 Score=134.70 Aligned_cols=230 Identities=13% Similarity=0.137 Sum_probs=159.9
Q ss_pred cCCeEEEEEcCCccccc----cccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce-eeccccccCCCC
Q 000709 93 YDDDVRFWQLWRNRAAA----AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG-RDIPKQELDNKS 166 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~----~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~-~~v~~~~~h~~~ 166 (1339)
.+..+|+|.+...+... ........++..++++..|+.-...++.+++-|.+. +||++++.. .....+..|...
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 36789999987422111 111112233456899999998877799999999988 889988722 122345789999
Q ss_pred eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC-CCCeeEEEEeeeCCCCCEEEEEeCC-CcEEEEe
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT-GGH-KGSISCLMTFMASSGEALLVSGGSD-GLLILWS 243 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~-~gH-~~~V~sl~wf~~spdg~~LaSgS~D-gtVrVWD 243 (1339)
|..|+|.- ..-+.+++.+.||++|+||++..+.-..+. ... ..+...++| ...+.+++++-..| ..|.+.|
T Consensus 199 V~DIaf~~----~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw--nkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 199 VYDIAFLK----GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW--NKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred eeEEEecc----CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc--CcCCchHHhhhhcCCceEEEEE
Confidence 99999941 224679999999999999998764433332 222 467777876 45667788876554 5699999
Q ss_pred CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeC
Q 000709 244 ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1339)
Q Consensus 244 l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1339)
++... .+...+.+|...|+.++|.|. ....|+|+|+|..+.|||+..--.-....|... ..-...|..+.|+
T Consensus 273 iR~P~-----tpva~L~~H~a~VNgIaWaPh--S~~hictaGDD~qaliWDl~q~~~~~~~dPila-y~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 273 IRVPC-----TPVARLRNHQASVNGIAWAPH--SSSHICTAGDDCQALIWDLQQMPRENGEDPILA-YTAGGEVNQIQWS 344 (364)
T ss_pred ecCCC-----cceehhhcCcccccceEecCC--CCceeeecCCcceEEEEecccccccCCCCchhh-hhccceeeeeeec
Confidence 98764 356678999999999999994 778999999999999999975321111112111 1245678899998
Q ss_pred CC-CCEEEEecCCe
Q 000709 324 PN-LDILTCVKDSH 336 (1339)
Q Consensus 324 pd-g~iLs~s~Dg~ 336 (1339)
+. ...++.+.+.+
T Consensus 345 ~~~~Dwiai~~~kk 358 (364)
T KOG0290|consen 345 SSQPDWIAICFGKK 358 (364)
T ss_pred ccCCCEEEEEecCe
Confidence 65 55776655543
No 183
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.43 E-value=1.9e-12 Score=142.17 Aligned_cols=236 Identities=15% Similarity=0.160 Sum_probs=171.9
Q ss_pred CCEEEEEEc-------CCCCEEEEEeCCCeEEEEECCCCcEEEEEecc-Cccce---EE--eccccceeEeeccccCCCc
Q 000709 12 DKIVKIQLH-------PTHPWLVTADASDHVSVWNWEHRQVIYELKAG-GVDQR---RL--VGAKLEKLAEGELEHKGKP 78 (1339)
Q Consensus 12 ~~V~~vafS-------Pdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~-~~~~i---~~--vs~d~~~Lasgs~d~~gk~ 78 (1339)
..|...+|- |+..++++.+.+.-|++||.-+|++..++... |.+++ .+ .++||..|..|
T Consensus 105 ~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-------- 176 (406)
T KOG2919|consen 105 ETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-------- 176 (406)
T ss_pred CEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec--------
Confidence 346666654 66779999999999999999999988877653 33332 23 33999999887
Q ss_pred cccccCCceEEEEEcCCeEEEEEcCC-ccccccccccc---cccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCc
Q 000709 79 TEAMRGGSVKQVNFYDDDVRFWQLWR-NRAAAAEAPTA---VSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMR 153 (1339)
Q Consensus 79 ~~~l~~g~V~sVaF~Dg~IrlWDl~~-~~~l~~~~~~~---~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~ 153 (1339)
+...||++|+.. ++.. ....+. .....+.+.+++|+|-....++.|+..+.+-+ +...+.
T Consensus 177 --------------ykrcirvFdt~RpGr~c-~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~ 241 (406)
T KOG2919|consen 177 --------------YKRCIRVFDTSRPGRDC-PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR 241 (406)
T ss_pred --------------ccceEEEeeccCCCCCC-cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence 478999999943 3322 111111 11225678999999987769999998888833 333332
Q ss_pred eeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEE
Q 000709 154 GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLV 231 (1339)
Q Consensus 154 ~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t-~~~i~~l~~gH~~~V~sl~wf~~spdg~~La 231 (1339)
.+....+|.+.|+.+.| .++|+.|.+|+ .|-.|..||++. ..++..+. +|.+.-+.-..|...|++++|+
T Consensus 242 --pl~llggh~gGvThL~~-----~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 242 --PLQLLGGHGGGVTHLQW-----CEDGNKLFSGARKDDKILCWDIRYSRDPVYALE-RHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred --ceeeecccCCCeeeEEe-----ccCcCeecccccCCCeEEEEeehhccchhhhhh-hhccCccceEEEecCCCCceee
Confidence 34456689999999999 67999999998 467899999985 34555554 6766333332566889999999
Q ss_pred EEeCCCcEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC
Q 000709 232 SGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD 287 (1339)
Q Consensus 232 SgS~DgtVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D 287 (1339)
+|+.||.|++||+.. +.. ...+..|+..|+.++++| --+++++++..
T Consensus 314 sG~tdG~V~vwdlk~~gn~------~sv~~~~sd~vNgvslnP---~mpilatssGq 361 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLGNE------VSVTGNYSDTVNGVSLNP---IMPILATSSGQ 361 (406)
T ss_pred ccCCCccEEEEecCCCCCc------ccccccccccccceecCc---ccceeeeccCc
Confidence 999999999999987 442 234677899999999999 57788877754
No 184
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.7e-13 Score=151.45 Aligned_cols=278 Identities=14% Similarity=0.203 Sum_probs=198.9
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec----cccceeEeeccccCCCcc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs----~d~~~Lasgs~d~~gk~~ 79 (1339)
...|.+|.+.|..|.|+..|.+|+||+.|..|.+|||.++..+..|..+|...++... .+.+.++..+.++..+..
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4678999999999999999999999999999999999999999999988877665333 455666666655542222
Q ss_pred ccc-------------cCCceEEEEE------------cCCeEEEEEcCCccccccccccccccCC---CCeeeeeeCCC
Q 000709 80 EAM-------------RGGSVKQVNF------------YDDDVRFWQLWRNRAAAAEAPTAVSNVT---SGFASPPPSTK 131 (1339)
Q Consensus 80 ~~l-------------~~g~V~sVaF------------~Dg~IrlWDl~~~~~l~~~~~~~~~~~~---~~V~slafspd 131 (1339)
.++ +.|+|.-++. .|+.+.-.|+..+....... ...+.. -..++++..|.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~--cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV--CREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee--eeccCCccceeeeeEecCCC
Confidence 221 2255555554 57777777877654432111 111112 25678889998
Q ss_pred CCeEEEEEecCcEEEE-EecCCcee----eccccc------cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000709 132 GRHFLVICCVNKAIFL-DLVTMRGR----DIPKQE------LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1339)
Q Consensus 132 g~~lLasgs~dg~I~w-D~~t~~~~----~v~~~~------~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t 200 (1339)
....+++|+.|...++ |...-... .+..+. ...-.|+|++| +.++.-+++...|-.|+++.-..
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y-----sh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY-----SHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe-----cCCccceeeeecccceEEecccc
Confidence 8889999999998865 65432211 111111 12447999999 76777777777888899995432
Q ss_pred --C----------eEEEEEecCCCC--CeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000709 201 --W----------KLVRRYTGGHKG--SISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1339)
Q Consensus 201 --~----------~~i~~l~~gH~~--~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1339)
| ..++...+||.. .|.++- ||-|...+++|||+-|.|.+|+-.+++.++- +.+-..-|
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN--FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~------MegDr~VV 439 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN--FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF------MEGDRHVV 439 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceee--eccCccceEEecCccceEEEEecchhHHHHH------hhcccceE
Confidence 2 334442238864 577775 4789999999999999999999999887654 46655689
Q ss_pred EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
+|+.=|| --+.|++.|-|..||||-..+.+
T Consensus 440 NCLEpHP---~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 440 NCLEPHP---HLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred eccCCCC---CCchhhccCCccceeeecCCccc
Confidence 9999999 57899999999999999875433
No 185
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=5.4e-11 Score=126.53 Aligned_cols=247 Identities=14% Similarity=0.228 Sum_probs=159.8
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
..|.+-+++|.+++|+.|..+|.|-+..+.+ +.+++...
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~s------------------------l~s~sa~~----------------- 49 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKS------------------------LDSGSAEP----------------- 49 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehh------------------------hhccccCC-----------------
Confidence 4566778999999999999999999998764 11111111
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCC----ceeec-----cccc-
Q 000709 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM----RGRDI-----PKQE- 161 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~----~~~~v-----~~~~- 161 (1339)
.|...+ .... .|+.+++.++|+. .+|++|+++.+.-|-++.. .++.+ +...
T Consensus 50 --~gk~~i-------------v~eq-ahdgpiy~~~f~d---~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 50 --PGKLKI-------------VPEQ-AHDGPIYYLAFHD---DFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred --CCCcce-------------eecc-ccCCCeeeeeeeh---hheeeccCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 111111 0112 2377788888872 2677777744445533221 11111 1111
Q ss_pred -cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEE
Q 000709 162 -LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 162 -~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVr 240 (1339)
..-..|+++-. .|..+.+++++.|+.++-||+++|+..+.+. ||+++|.++. .-.....++||+.||++|
T Consensus 111 ~~evPeINam~l-----dP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv---~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 111 AVEVPEINAMWL-----DPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVV---GRNANGQILSGAEDGTVR 181 (325)
T ss_pred cccCCccceeEe-----ccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeee---ecccCcceeecCCCccEE
Confidence 11346778877 5566667777799999999999999999998 9999999996 333455788999999999
Q ss_pred EEeCCCCCccceecc---cccccccc-cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 241 LWSADHGQDSRELVP---KLSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~---~~~l~gH~-~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
+||.++++++..+.+ ...++.|. .+|-+++.+ .++|++|+ ...+.+|++++.++...|. +.+|
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~-----edWlvCGg-Gp~lslwhLrsse~t~vfp----ipa~--- 248 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN-----EDWLVCGG-GPKLSLWHLRSSESTCVFP----IPAR--- 248 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEecc-----CceEEecC-CCceeEEeccCCCceEEEe----cccc---
Confidence 999999998765422 12233333 457777754 46887765 5678999999998888753 2333
Q ss_pred eeEEEeCCCCCEEEEecCCe--EEEcc
Q 000709 317 SWCHPRAPNLDILTCVKDSH--IWAIE 341 (1339)
Q Consensus 317 V~svafspdg~iLs~s~Dg~--LWDi~ 341 (1339)
+-.+.|..| .++++|+... -|.+.
T Consensus 249 v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 249 VHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eeEeeeecc-eEEEeccccceeeeeec
Confidence 334555443 3566665544 36554
No 186
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=3e-12 Score=140.65 Aligned_cols=352 Identities=13% Similarity=0.133 Sum_probs=208.4
Q ss_pred eeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEE-EECCCcEEEEECCCCeEE
Q 000709 126 PPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKLV 204 (1339)
Q Consensus 126 lafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~Las-Gs~DgtIrIWDl~t~~~i 204 (1339)
++|||+|+ +++++++-+.++=|..+.+...+.. --+.|.-+.| +.|..+++. .+.|+.|.+|++...+..
T Consensus 14 c~fSp~g~-yiAs~~~yrlviRd~~tlq~~qlf~---cldki~yieW-----~ads~~ilC~~yk~~~vqvwsl~Qpew~ 84 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLSRYRLVIRDSETLQLHQLFL---CLDKIVYIEW-----KADSCHILCVAYKDPKVQVWSLVQPEWY 84 (447)
T ss_pred eeECCCCC-eeeeeeeeEEEEeccchhhHHHHHH---HHHHhhheee-----eccceeeeeeeeccceEEEEEeecceeE
Confidence 56999998 9999988866655877765433211 1456777888 566666554 467889999999998888
Q ss_pred EEEecCCCCCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE
Q 000709 205 RRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT 283 (1339)
Q Consensus 205 ~~l~~gH~~~V~sl~wf~~spdg~-~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS 283 (1339)
.++. ....++.+++ .+|+|+ +|.+...|-.|.||.+.+.++.. +.-....+..++|+| |+++.+.
T Consensus 85 ckId-eg~agls~~~---WSPdgrhiL~tseF~lriTVWSL~t~~~~~-------~~~pK~~~kg~~f~~---dg~f~ai 150 (447)
T KOG4497|consen 85 CKID-EGQAGLSSIS---WSPDGRHILLTSEFDLRITVWSLNTQKGYL-------LPHPKTNVKGYAFHP---DGQFCAI 150 (447)
T ss_pred EEec-cCCCcceeee---ECCCcceEeeeecceeEEEEEEeccceeEE-------ecccccCceeEEECC---CCceeee
Confidence 8887 5667778887 489995 55667789999999999876543 222344578899999 8888887
Q ss_pred EeCCCc---EEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEccCCcccccccCccccCCCCC
Q 000709 284 IGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVP 360 (1339)
Q Consensus 284 gs~Dg~---IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~ 360 (1339)
.+.-.. +.|.....+..++. +.-.+...+.+.|+|||..++. ||---.
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~------f~~dT~DltgieWsPdg~~laV------wd~~Le----------------- 201 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKE------FKLDTIDLTGIEWSPDGNWLAV------WDNVLE----------------- 201 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHh------cCCCcccccCceECCCCcEEEE------ecchhh-----------------
Confidence 775322 22222222333333 2333445668999999987765 764311
Q ss_pred CeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccCCCCCCCCce--EEEEecCe-EEEEEeeecc
Q 000709 361 PQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHS--AVYIVERE-LKLVNFQLSS 437 (1339)
Q Consensus 361 ~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~~~~~s~~~s--~~~~~~~~-l~l~~f~l~~ 437 (1339)
...+..+....+..+.|+| .+.++++|+.|+++ |+.+.-+-.++..+..+..-.+.. ++|-.... +++.--.++
T Consensus 202 ykv~aYe~~lG~k~v~wsP-~~qflavGsyD~~l-rvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs- 278 (447)
T KOG4497|consen 202 YKVYAYERGLGLKFVEWSP-CNQFLAVGSYDQML-RVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS- 278 (447)
T ss_pred heeeeeeeccceeEEEecc-ccceEEeeccchhh-hhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc-
Confidence 1122233434688999999 57789999999996 777765544444443322221111 11111011 110000000
Q ss_pred CCCCCCCCCcccccCCcccCCCchhhHHH-hhcccccccC--CCCCccEEEEcCCCCEEEEEECC-CCEEEEEEeCCcee
Q 000709 438 AANPSLGNNGSLSETGRLKGDLPDALQIK-QIKKHISTPV--PHDSYSILSVSSSGKYLAVVWPD-IPYFSVYKVSDWSI 513 (1339)
Q Consensus 438 ~~n~~lg~~~~~S~~G~~~~~~~~~l~v~-~~~r~i~t~~--~~e~~s~l~~SpdGrylaV~~~~-~g~~~Vy~i~~~~~ 513 (1339)
-.+...+....-....+++. ....+. ...| ..+-. |..+.+.+++|+|..|++-..+. -+.+.||++.+.+.
T Consensus 279 f~p~~~~a~~~~~se~~YE~---~~~pv~~~~lk-p~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l 354 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQ---QMTPVKVHKLK-PPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL 354 (447)
T ss_pred cCCCccccCccccchhhhhh---hhcceeeeccc-CCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh
Confidence 01101100000000001000 000000 0011 11111 33445689999999999554332 24566888877654
Q ss_pred ----eecCceeEEEeccCCCeEEEEec
Q 000709 514 ----VDSGSARLLAWDTCRDRFAILES 536 (1339)
Q Consensus 514 ----i~~G~~~~~aWs~~~~~fAvl~~ 536 (1339)
+..-.++.+.|+|.+.|+++...
T Consensus 355 ~avLiQk~piraf~WdP~~prL~vctg 381 (447)
T KOG4497|consen 355 HAVLIQKHPIRAFEWDPGRPRLVVCTG 381 (447)
T ss_pred hhhhhhccceeEEEeCCCCceEEEEcC
Confidence 33666999999999999999964
No 187
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.41 E-value=2.1e-11 Score=149.33 Aligned_cols=273 Identities=16% Similarity=0.140 Sum_probs=187.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeec----cccccCCCCeE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI----PKQELDNKSLV 168 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v----~~~~~h~~~V~ 168 (1339)
++.+.+|++..... +.......+.|.++.|+|..+.++++|+.+|.| .||...+..... .....|..++.
T Consensus 221 ~~~~~vW~~~~p~~-----Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~ 295 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNT-----PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVT 295 (555)
T ss_pred CceEEEEecCCCCC-----ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeE
Confidence 35789999987622 334444478899999999999899999999988 778876654211 12346788999
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE-EEEE----e------cCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL-VRRY----T------GGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~-i~~l----~------~gH~~~V~sl~wf~~spdg~~LaSgS~Dg 237 (1339)
.+.|.. ++.+.-++++|.||.|..|+++.-.. .... . ......++++. +...+.+.|+.|+.+|
T Consensus 296 ~vvW~~---~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~--F~~~~p~~FiVGTe~G 370 (555)
T KOG1587|consen 296 AVVWLQ---NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLK--FEPTDPNHFIVGTEEG 370 (555)
T ss_pred EEEEec---cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEe--eccCCCceEEEEcCCc
Confidence 999965 34446699999999999998864322 1111 0 01234567776 2455677899999999
Q ss_pred cEEEEe---CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC-CCeeEEEecCCCccccc
Q 000709 238 LLILWS---ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACH 313 (1339)
Q Consensus 238 tVrVWD---l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~-t~~~l~~~~~~~~l~~H 313 (1339)
.|..=+ ...... ..+.....+..|.+.|+++.++|+ ....+.+++ |.+|+||... ...++.. +..+
T Consensus 371 ~v~~~~r~g~~~~~~-~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~g-DW~vriWs~~~~~~Pl~~------~~~~ 440 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPE-VSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVG-DWTVRIWSEDVIASPLLS------LDSS 440 (555)
T ss_pred EEEEEeccCCccccc-ccccccccccccCcceEeeecCCC--ccceeeeec-cceeEeccccCCCCcchh------hhhc
Confidence 988733 222220 112234456778999999999996 445666666 9999999977 3333333 5667
Q ss_pred CCceeEEEeCCCCC--EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEE
Q 000709 314 SVASWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT 389 (1339)
Q Consensus 314 ~~~V~svafspdg~--iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs 389 (1339)
...|++++|||-.. ++++..||. |||+..... .|..+...+.. ....+.|++ .+.+|++|.
T Consensus 441 ~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-------------~Pv~s~~~~~~-~l~~~~~s~-~g~~lavGd 505 (555)
T KOG1587|consen 441 PDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-------------EPVLSQKVCSP-ALTRVRWSP-NGKLLAVGD 505 (555)
T ss_pred cceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-------------CCccccccccc-ccceeecCC-CCcEEEEec
Confidence 77799999999876 335566786 899986532 22233333322 567777887 678899999
Q ss_pred CCCeEEEEecCCC
Q 000709 390 NVGVIISEFDPRS 402 (1339)
Q Consensus 390 ~DG~IlriWd~~~ 402 (1339)
..|.+ ++|++..
T Consensus 506 ~~G~~-~~~~l~~ 517 (555)
T KOG1587|consen 506 ANGTT-HILKLSE 517 (555)
T ss_pred CCCcE-EEEEcCc
Confidence 99997 6887753
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.7e-11 Score=146.28 Aligned_cols=296 Identities=14% Similarity=0.136 Sum_probs=195.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C--cEEEEEeccCccceEEec--cccceeEeeccccCCCccccc
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH--R--QVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~t--g--~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l 82 (1339)
.|+-.++|.++||.++++|+|..||.|.||.--. + .....++-| .+.+.++. ++|.+|.+|+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~~LlSGG----------- 270 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDGAYLLSGG----------- 270 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEecCCceEeecc-----------
Confidence 4666689999999999999999999999996332 1 123344433 35555554 8999999886
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceee-cccc-
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRD-IPKQ- 160 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~-v~~~- 160 (1339)
.++.+.+|.+.+++. ..++.+ .+.|..+.++||+..+.++..++.++.+...++..+. +.-.
T Consensus 271 ----------~E~VLv~Wq~~T~~k--qfLPRL----gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~ 334 (792)
T KOG1963|consen 271 ----------REGVLVLWQLETGKK--QFLPRL----GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIK 334 (792)
T ss_pred ----------cceEEEEEeecCCCc--cccccc----CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCcc
Confidence 478899999998863 233333 5679999999999966666666666666543332211 1111
Q ss_pred -------ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe----cCCCC------CeeEEEEeee
Q 000709 161 -------ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT----GGHKG------SISCLMTFMA 223 (1339)
Q Consensus 161 -------~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~----~gH~~------~V~sl~wf~~ 223 (1339)
....+-.+.+.+ +|.-+.++..+..|.|.+||+.+.+.+..+. .-+.+ .++.+. .
T Consensus 335 ~~~~~~k~~~~~l~t~~~i-----dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~---~ 406 (792)
T KOG1963|consen 335 PPTPSTKTRPQSLTTGVSI-----DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVA---R 406 (792)
T ss_pred CCCccccccccccceeEEE-----cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeeh---h
Confidence 112445666777 5556677888899999999998876665542 12222 344443 5
Q ss_pred CCCCCEEEEEe--------CC--CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEE
Q 000709 224 SSGEALLVSGG--------SD--GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIW 293 (1339)
Q Consensus 224 spdg~~LaSgS--------~D--gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIW 293 (1339)
+..|.+++|.- .| -.+|+|-.........+... ....|...+...++.+. ......++++.||.++||
T Consensus 407 ~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~-I~~PH~~~~vat~~~~~-~rs~~~vta~~dg~~KiW 484 (792)
T KOG1963|consen 407 SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTK-INNPHGNAFVATIFLNP-TRSVRCVTASVDGDFKIW 484 (792)
T ss_pred hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEE-EecCCCceeEEEEEecC-cccceeEEeccCCeEEEE
Confidence 66688888763 23 35788987665433322111 23558877777666652 233389999999999999
Q ss_pred ECCCCeeEEEec----CCCcccccCCceeEEEeCCCCCEEEEecCCe--EEEccC
Q 000709 294 DTVSFKELRRIK----PVPKLACHSVASWCHPRAPNLDILTCVKDSH--IWAIEH 342 (1339)
Q Consensus 294 Dl~t~~~l~~~~----~~~~l~~H~~~V~svafspdg~iLs~s~Dg~--LWDi~t 342 (1339)
-+.+.+.+..-. +...-..|...+.+++|+.||.+|++|.|++ +||..+
T Consensus 485 ~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 485 VFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 884332211100 0001234778899999999999999999986 899986
No 189
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.39 E-value=8.8e-13 Score=158.44 Aligned_cols=221 Identities=21% Similarity=0.273 Sum_probs=154.3
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
+..+.+|...|+|+.| ...|.+|++|++|..++||.+.+..++.... ||.+.|+.++ .+.+..+++++|.|
T Consensus 183 ikrLlgH~naVyca~f-----Drtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdla---vs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIF-----DRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLA---VSSNNTMIAAASND 253 (1113)
T ss_pred HHHHHhhhhheeeeee-----ccccceEeecCccceeeeeeccchhhhccCC-CCccccchhc---cchhhhhhhhcccC
Confidence 4456789999999999 7889999999999999999999999999997 9999999997 78888899999999
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 237 gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
..|++|.+..+..+ ..+.||++.|++++|+|. .+.+.||++++||.+ ..............+ ..-
T Consensus 254 ~vIrvWrl~~~~pv------svLrghtgavtaiafsP~-------~sss~dgt~~~wd~r-~~~~~y~prp~~~~~-~~~ 318 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPV------SVLRGHTGAVTAIAFSPR-------ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTE-KDL 318 (1113)
T ss_pred ceEEEEecCCCchH------HHHhccccceeeeccCcc-------ccCCCCCceEecccc-ccccccCCCCCCccc-ccc
Confidence 99999999998754 448999999999999992 278899999999988 221111100001111 122
Q ss_pred eeEEEeCCCCC-EEEEecCCe--EEEccCCcccc-----------c-----------ccCccccCCCCCCeEEccCCccc
Q 000709 317 SWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSA-----------L-----------TRPLCELSSLVPPQVLAHHKKLR 371 (1339)
Q Consensus 317 V~svafspdg~-iLs~s~Dg~--LWDi~t~~~~~-----------~-----------~~~l~~~~~~~~~~tl~~~~~~~ 371 (1339)
+.++.|-.++. +++++.|+. .|.+....+.. + .-..+........+.+.+|.. .
T Consensus 319 ~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd-~ 397 (1113)
T KOG0644|consen 319 VDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD-E 397 (1113)
T ss_pred eeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhccccc-c
Confidence 33444444433 445555552 22221100000 0 000111111222344456666 8
Q ss_pred EEEEEEecCCCcEEEEEECCCeEEEEecCCCC
Q 000709 372 VYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 372 I~~la~sp~~~~lLatGs~DG~IlriWd~~~~ 403 (1339)
++.+.+||-++....+++.||.. .+||+-+.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst-~iwdi~eg 428 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGST-IIWDIWEG 428 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCce-EeeecccC
Confidence 99999999888888889999997 59997754
No 190
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.5e-11 Score=127.90 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=140.0
Q ss_pred CeeeeeeCCCCCeEEEEEecCcEEEE-EecC---Cc-----eeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 122 GFASPPPSTKGRHFLVICCVNKAIFL-DLVT---MR-----GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~dg~I~w-D~~t---~~-----~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
.|.+-+++|.++ +|++|..+|.|.+ .+++ +. ...+.....|..+|+.++|+ ..+|++|+ ||.
T Consensus 12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-------d~~Lls~g-dG~ 82 (325)
T KOG0649|consen 12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-------DDFLLSGG-DGL 82 (325)
T ss_pred HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-------hhheeecc-Cce
Confidence 355667899997 8999999998844 4432 11 11233347899999999993 56777775 499
Q ss_pred EEEEECCCCeE-------EEEEecCCC-----CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc
Q 000709 193 IRVLSMISWKL-------VRRYTGGHK-----GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK 260 (1339)
Q Consensus 193 IrIWDl~t~~~-------i~~l~~gH~-----~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~ 260 (1339)
|+-|.++.... ......-|. ..|+++ | ..|..+-++.++.|+.+.-||+.+|+..++ ++
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam-~--ldP~enSi~~AgGD~~~y~~dlE~G~i~r~------~r 153 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAM-W--LDPSENSILFAGGDGVIYQVDLEDGRIQRE------YR 153 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCcccee-E--eccCCCcEEEecCCeEEEEEEecCCEEEEE------Ec
Confidence 99999864321 111111232 357777 5 466666677777999999999999986554 79
Q ss_pred ccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCc---ccccC-CceeEEEeCCCCCEEEEecCC-
Q 000709 261 AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPK---LACHS-VASWCHPRAPNLDILTCVKDS- 335 (1339)
Q Consensus 261 gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~---l~~H~-~~V~svafspdg~iLs~s~Dg- 335 (1339)
||++.|.++.-.. ....+++|+.||++|+||++++++++.+++... ++.|- ..|-+++. +...+.||...
T Consensus 154 GHtDYvH~vv~R~---~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp~ 228 (325)
T KOG0649|consen 154 GHTDYVHSVVGRN---ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGPK 228 (325)
T ss_pred CCcceeeeeeecc---cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCCc
Confidence 9999999998754 467899999999999999999999999877654 23332 23445554 44466555433
Q ss_pred -eEEEccCC
Q 000709 336 -HIWAIEHP 343 (1339)
Q Consensus 336 -~LWDi~t~ 343 (1339)
.+|+++..
T Consensus 229 lslwhLrss 237 (325)
T KOG0649|consen 229 LSLWHLRSS 237 (325)
T ss_pred eeEEeccCC
Confidence 49999865
No 191
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.36 E-value=1.5e-11 Score=139.07 Aligned_cols=290 Identities=14% Similarity=0.167 Sum_probs=185.2
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 12 DKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 12 ~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
..|..+.|+++.. .|+||+.|..|+||-+..+..- +.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~--------------------------------------~~---- 51 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG--------------------------------------GG---- 51 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCC--------------------------------------CC----
Confidence 5799999999876 9999999999999997642210 00
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecC--------C-------cee
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT--------M-------RGR 155 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t--------~-------~~~ 155 (1339)
+..|.. .....+|...|+++.|+|+|+ +|++|++++.+.++... . ...
T Consensus 52 ---~~~V~y-------------~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~ 114 (434)
T KOG1009|consen 52 ---DMKVEY-------------LSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWV 114 (434)
T ss_pred ---ceeEEE-------------eecccCCcceeEEEEEcCCcC-eeeecCCCceEEEEEecCcCCccccchhhhCccceE
Confidence 111111 122234478899999999998 99999999999442222 1 111
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~ 235 (1339)
......+|.+.|..++| ++++.++++|+-|.++++||+..|+....+. .|.++|..++| .|-++++++=+.
T Consensus 115 v~k~lr~h~~diydL~W-----s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvaw---Dpl~qyv~s~s~ 185 (434)
T KOG1009|consen 115 VKKVLRGHRDDIYDLAW-----SPDSNFLVSGSVDNSVRLWDVHAGQLLAILD-DHEHYVQGVAW---DPLNQYVASKSS 185 (434)
T ss_pred EEEEecccccchhhhhc-----cCCCceeeeeeccceEEEEEeccceeEeecc-ccccccceeec---chhhhhhhhhcc
Confidence 22344678899999999 8899999999999999999999999998887 99999999984 788889999999
Q ss_pred CCcEEEEeCCCCCccceec----c----------cccccccccc----eEEEEeeccCCCCCEEEEEeC----CCcE---
Q 000709 236 DGLLILWSADHGQDSRELV----P----------KLSLKAHDGG----VVAVELSRVMGGSPQLITIGA----DKTL--- 290 (1339)
Q Consensus 236 DgtVrVWDl~tg~~~~~~~----~----------~~~l~gH~~~----V~svafsp~~~dg~~LaSgs~----Dg~I--- 290 (1339)
|+..+++.+...+.++... + ...+ -|+.. ...++|+| +|.++++.+. ++.+
T Consensus 186 dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL-fhDeTlksFFrRlsfTP---dG~llvtPag~~~~g~~~~~n 261 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL-FHDETLKSFFRRLSFTP---DGSLLVTPAGLFKVGGGVFRN 261 (434)
T ss_pred CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee-eecCchhhhhhhcccCC---CCcEEEcccceeeeCCceeec
Confidence 9877777766543322110 0 0000 12211 34577888 7888887542 2333
Q ss_pred --EEEECCCCeeEEEecCCCcccccCCceeEEEeCC------------------CCCEE-EEecCCe-EEEccCCccccc
Q 000709 291 --AIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP------------------NLDIL-TCVKDSH-IWAIEHPTYSAL 348 (1339)
Q Consensus 291 --rIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp------------------dg~iL-s~s~Dg~-LWDi~t~~~~~~ 348 (1339)
++++-. .+. +|...+.+-...+..+.|+| -+.++ .++.+.- |||..+.
T Consensus 262 ~tYvfsrk---~l~--rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~----- 331 (434)
T KOG1009|consen 262 TSYVFSRK---DLK--RPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL----- 331 (434)
T ss_pred eeEeeccc---ccc--CceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc-----
Confidence 233221 111 11122333333333444433 11112 2333332 5665542
Q ss_pred ccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000709 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1339)
Q Consensus 349 ~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I 394 (1339)
.|.....+-+-..|+.++|++ ++..++..+.||..
T Consensus 332 ----------~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyC 366 (434)
T KOG1009|consen 332 ----------EPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFC 366 (434)
T ss_pred ----------cceEEEeeeeeeeecceeecC-CCcEEEEeccCCce
Confidence 233333332223899999999 67778889999974
No 192
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.36 E-value=4.6e-11 Score=146.45 Aligned_cols=251 Identities=12% Similarity=0.075 Sum_probs=167.8
Q ss_pred CCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcE--E---EEEeccCccceEEec----cccceeEeeccccCCCccc
Q 000709 11 NDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQV--I---YELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 11 s~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~--l---~~~~~~~~~~i~~vs----~d~~~Lasgs~d~~gk~~~ 80 (1339)
...|+|+.|+|..+ +|+.|..+|.|.+||+..+.. . ......|.+.+..+. ....-+++++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s--------- 312 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS--------- 312 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---------
Confidence 45799999999766 778888999999999987654 2 222223333333322 1112222222
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccc--cc-----cccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCC
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAE--AP-----TAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTM 152 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~--~~-----~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~ 152 (1339)
.||.|+.|+++.-..-... .. .........++++.|.+.....+++|++.|.|.- +....
T Consensus 313 ------------sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 313 ------------SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ------------cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 5999999987654331110 00 0111224568899999988889999999999944 33222
Q ss_pred cee------eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCCeeEEEEeeeCC
Q 000709 153 RGR------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-SWKLVRRYTGGHKGSISCLMTFMASS 225 (1339)
Q Consensus 153 ~~~------~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~-t~~~i~~l~~gH~~~V~sl~wf~~sp 225 (1339)
+.. .......|.+.|+++.+. |-+..++..+.|.+++||... ...++..+. .+...|++++|. .-
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~n-----PF~~k~fls~gDW~vriWs~~~~~~Pl~~~~-~~~~~v~~vaWS--pt 452 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRN-----PFYPKNFLSVGDWTVRIWSEDVIASPLLSLD-SSPDYVTDVAWS--PT 452 (555)
T ss_pred cccccccccccccccccCcceEeeecC-----CCccceeeeeccceeEeccccCCCCcchhhh-hccceeeeeEEc--Cc
Confidence 111 123456778999999994 445444444449999999987 555666665 788889999973 22
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 226 dg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
....|+++..||.|.+||+...... |..+..-+....+.+.|++ .++.|++|...|++++|++..
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~----Pv~s~~~~~~~l~~~~~s~---~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEE----PVLSQKVCSPALTRVRWSP---NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccC----CcccccccccccceeecCC---CCcEEEEecCCCcEEEEEcCc
Confidence 3458889999999999999865532 2233333455566777887 799999999999999999963
No 193
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.35 E-value=5.7e-10 Score=131.45 Aligned_cols=277 Identities=9% Similarity=0.031 Sum_probs=159.0
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEec-CCceeeccccccCCCCeEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV-TMRGRDIPKQELDNKSLVCM 170 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~-t~~~~~v~~~~~h~~~V~~v 170 (1339)
.++.|++||+.+...+. ..... . .......++++|+++.+++++..++.+ .|+.. .++...+... .....+..+
T Consensus 10 ~~~~I~~~~~~~~g~l~-~~~~~-~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~~i 85 (330)
T PRK11028 10 ESQQIHVWNLNHEGALT-LLQVV-D-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPTHI 85 (330)
T ss_pred CCCCEEEEEECCCCcee-eeeEE-e-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCceEE
Confidence 58899999996432211 11111 1 124466789999998544544444544 56775 3333222211 223456789
Q ss_pred EEeeccccCCCCEEEEEE-CCCcEEEEECCCC----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEE-EeCCCcEEEEeC
Q 000709 171 EFLSRSAVGDVPLVAFGS-SDGVIRVLSMISW----KLVRRYTGGHKGSISCLMTFMASSGEALLVS-GGSDGLLILWSA 244 (1339)
Q Consensus 171 af~P~s~Spdg~~LasGs-~DgtIrIWDl~t~----~~i~~l~~gH~~~V~sl~wf~~spdg~~LaS-gS~DgtVrVWDl 244 (1339)
.| +|+++++++++ .++.|.+||+.+. +.+..+. +.....++. ++|+++++++ ...++.|.+||+
T Consensus 86 ~~-----~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~---~~p~g~~l~v~~~~~~~v~v~d~ 155 (330)
T PRK11028 86 ST-----DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSAN---IDPDNRTLWVPCLKEDRIRLFTL 155 (330)
T ss_pred EE-----CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeE---eCCCCCEEEEeeCCCCEEEEEEE
Confidence 99 78999888876 4889999999742 2233222 223345554 7899988854 456799999999
Q ss_pred CCCCcccee-cccccccccccceEEEEeeccCCCCCEEEEEeC-CCcEEEEECCC--C--eeEEEecCCCcccccCCcee
Q 000709 245 DHGQDSREL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DKTLAIWDTVS--F--KELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 245 ~tg~~~~~~-~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-Dg~IrIWDl~t--~--~~l~~~~~~~~l~~H~~~V~ 318 (1339)
.+...+... ....... .......+.|+| ++++++++.. +++|.+||+.. + +.++.+.....-..+.....
T Consensus 156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p---dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP---NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCCcccccCCCceecC-CCCCCceEEECC---CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 864322110 0001111 123467899999 7888877765 99999999973 2 23333321111001122233
Q ss_pred EEEeCCCCCEE-EEec-CCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000709 319 CHPRAPNLDIL-TCVK-DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1339)
Q Consensus 319 svafspdg~iL-s~s~-Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I 394 (1339)
.+.++|+++++ ++.+ ++. +|++...... + ........ .. ..+.+.++|++.+++++...++.|
T Consensus 232 ~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-----~------~~~~~~~~-~~-~p~~~~~~~dg~~l~va~~~~~~v 298 (330)
T PRK11028 232 DIHITPDGRHLYACDRTASLISVFSVSEDGSV-----L------SFEGHQPT-ET-QPRGFNIDHSGKYLIAAGQKSHHI 298 (330)
T ss_pred eEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-----E------EEeEEEec-cc-cCCceEECCCCCEEEEEEccCCcE
Confidence 68899999966 4333 343 7888643110 0 00111111 11 345689999766655566568886
Q ss_pred EEEecCC
Q 000709 395 ISEFDPR 401 (1339)
Q Consensus 395 lriWd~~ 401 (1339)
.+|+..
T Consensus 299 -~v~~~~ 304 (330)
T PRK11028 299 -SVYEID 304 (330)
T ss_pred -EEEEEc
Confidence 688654
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=5.3e-10 Score=131.71 Aligned_cols=276 Identities=9% Similarity=0.064 Sum_probs=159.0
Q ss_pred EEEeCCCeEEEEECCC-Cc--EEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcC
Q 000709 27 VTADASDHVSVWNWEH-RQ--VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1339)
Q Consensus 27 aSgs~DGtIrIWDl~t-g~--~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~ 103 (1339)
++...++.|++||+.+ ++ .+..+...+......++++++.|..+.. .++.|.+|++.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~--------------------~~~~i~~~~~~ 65 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR--------------------PEFRVLSYRIA 65 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC--------------------CCCcEEEEEEC
Confidence 3446789999999964 43 5566654333333455688888876542 25677778876
Q ss_pred C-ccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCC-ceeeccccccCCCCeEEEEEeeccccCC
Q 000709 104 R-NRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM-RGRDIPKQELDNKSLVCMEFLSRSAVGD 180 (1339)
Q Consensus 104 ~-~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~-~~~~v~~~~~h~~~V~~vaf~P~s~Spd 180 (1339)
. +.... .... ........++|+|+++.++++...++.+ +|++.+. ..........+...+.++++ +|+
T Consensus 66 ~~g~l~~--~~~~--~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~p~ 136 (330)
T PRK11028 66 DDGALTF--AAES--PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANI-----DPD 136 (330)
T ss_pred CCCceEE--eeee--cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEe-----CCC
Confidence 3 22110 0100 1122356799999998555555445555 6787532 11111111122345677888 778
Q ss_pred CCEEEEEE-CCCcEEEEECCCCeEEEE-----EecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCC-ccce
Q 000709 181 VPLVAFGS-SDGVIRVLSMISWKLVRR-----YTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQ-DSRE 252 (1339)
Q Consensus 181 g~~LasGs-~DgtIrIWDl~t~~~i~~-----l~~gH~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~tg~-~~~~ 252 (1339)
++++++++ .++.|.+||+.+...+.. ...........+. ++|++++++++.. +++|.+||+.... .+..
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~---~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMV---FHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEE---ECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 98886554 669999999976332211 1101123345554 7999999988776 9999999997421 1111
Q ss_pred eccccccc---ccccceEEEEeeccCCCCCEEEEEe-CCCcEEEEECCCCe-eEEEecCCCcccccCCceeEEEeCCCCC
Q 000709 253 LVPKLSLK---AHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSFK-ELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1339)
Q Consensus 253 ~~~~~~l~---gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~~-~l~~~~~~~~l~~H~~~V~svafspdg~ 327 (1339)
......+. .+......+.|+| ++++++++. .++.|.+|++.... .+..... ... ....+.+.++|+|+
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~p---dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~---~~~-~~~p~~~~~~~dg~ 286 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITP---DGRHLYACDRTASLISVFSVSEDGSVLSFEGH---QPT-ETQPRGFNIDHSGK 286 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECC---CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEE---Eec-cccCCceEECCCCC
Confidence 10011111 1122344688999 788888875 47899999986432 2221111 111 12345789999999
Q ss_pred EE-EEe-cCCe--EEEcc
Q 000709 328 IL-TCV-KDSH--IWAIE 341 (1339)
Q Consensus 328 iL-s~s-~Dg~--LWDi~ 341 (1339)
+| +++ .+++ +|+++
T Consensus 287 ~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 287 YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEEEccCCcEEEEEEc
Confidence 66 333 3554 78775
No 195
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=142.84 Aligned_cols=220 Identities=14% Similarity=0.180 Sum_probs=164.6
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec----cccceeEeeccccCCCccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG----AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs----~d~~~Lasgs~d~~gk~~~ 80 (1339)
+.|.||++.|+|++|+.+|.+|++|++|-.+.|||.-..++++.+..+|...|+++. ...+++++|.
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA--------- 114 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA--------- 114 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc---------
Confidence 568999999999999999999999999999999999999999999999999999887 4566777765
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccc-----cccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCCce
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAA-----AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRG 154 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~-----~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~~~ 154 (1339)
.|..|+++|+...+.-. ........+|...|..++-.|++++.+.+++.||+++ +|++....
T Consensus 115 ------------gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 115 ------------GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ------------CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 58899999998532211 0112233455788889999999988999999999995 58876321
Q ss_pred eecccc-------c--cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--------C----------eEEEEE
Q 000709 155 RDIPKQ-------E--LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------W----------KLVRRY 207 (1339)
Q Consensus 155 ~~v~~~-------~--~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t--------~----------~~i~~l 207 (1339)
. -+.. . ...-...|+..+| .+..+|++|+.|-..++||.+. + .+++.+
T Consensus 183 c-~p~~~~~~~l~ny~~~lielk~ltisp----~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf 257 (758)
T KOG1310|consen 183 C-NPDEDCPSILVNYNPQLIELKCLTISP----SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYF 257 (758)
T ss_pred C-CccccccHHHHHhchhhheeeeeeecC----CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhhee
Confidence 1 1001 1 1123567888854 2467899999999999999431 1 245555
Q ss_pred ecCCC--------CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 000709 208 TGGHK--------GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1339)
Q Consensus 208 ~~gH~--------~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~ 250 (1339)
..+|. ..++|+....|+|+|.-|+..-..-.|.++|+..++..
T Consensus 258 ~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 258 SPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 44553 45677766679999987777666678999999887654
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.1e-11 Score=141.22 Aligned_cols=183 Identities=19% Similarity=0.294 Sum_probs=137.6
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
.+.+|.+.|+|++| +.+|.+|++||+|-.+.|||.-..+.+..+..||...|.|+.+ ....+.++++||+.|..
T Consensus 45 eL~GH~GCVN~LeW-----n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKF-vP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEW-----NADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKF-VPYTNNRIVLSGAGDKL 118 (758)
T ss_pred hhccccceecceee-----cCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEee-eccCCCeEEEeccCcce
Confidence 46899999999999 8899999999999999999999889999998899999999983 24456678999999999
Q ss_pred EEEEeCCCCCc----cceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 239 LILWSADHGQD----SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 239 VrVWDl~tg~~----~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
|+++|+...+. -....+...+..|...|..++-.| +....+-+++.||+|+-+|++.... .
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~----------c--- 183 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHV----------C--- 183 (758)
T ss_pred EEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCcc----------C---
Confidence 99999985221 001113344677999999999988 2447889999999999999875321 0
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE
Q 000709 315 VASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI 394 (1339)
Q Consensus 315 ~~V~svafspdg~iLs~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I 394 (1339)
.|++.... .+-++. ..- ....|++.+|.++++|++|+.|-..
T Consensus 184 --------~p~~~~~~-----~l~ny~------------------------~~l-ielk~ltisp~rp~~laVGgsdpfa 225 (758)
T KOG1310|consen 184 --------NPDEDCPS-----ILVNYN------------------------PQL-IELKCLTISPSRPYYLAVGGSDPFA 225 (758)
T ss_pred --------CccccccH-----HHHHhc------------------------hhh-heeeeeeecCCCCceEEecCCCchh
Confidence 11110000 000000 000 1577999999999999999999997
Q ss_pred EEEecCC
Q 000709 395 ISEFDPR 401 (1339)
Q Consensus 395 lriWd~~ 401 (1339)
|++|.|
T Consensus 226 -rLYD~R 231 (758)
T KOG1310|consen 226 -RLYDRR 231 (758)
T ss_pred -hhhhhh
Confidence 899954
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=6.9e-11 Score=145.55 Aligned_cols=248 Identities=15% Similarity=0.215 Sum_probs=159.0
Q ss_pred CCEEEEEEcC--CCCEEEEEeCCCeEEEEE-CCCC----cEEEEEec------cCccceEEec---cccceeEeeccccC
Q 000709 12 DKIVKIQLHP--THPWLVTADASDHVSVWN-WEHR----QVIYELKA------GGVDQRRLVG---AKLEKLAEGELEHK 75 (1339)
Q Consensus 12 ~~V~~vafSP--dg~~LaSgs~DGtIrIWD-l~tg----~~l~~~~~------~~~~~i~~vs---~d~~~Lasgs~d~~ 75 (1339)
.+|+.+.+-. |..++++|+.||.||||+ +.++ +.+..+.. +..+.-..++ ..|..+.+|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG----- 1184 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG----- 1184 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-----
Confidence 4688888764 344899999999999996 3332 22222211 0000011111 223333333
Q ss_pred CCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCce
Q 000709 76 GKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG 154 (1339)
Q Consensus 76 gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~ 154 (1339)
. -..|||||.....+... ........++++.-+-.+..++++|..||.+++ |.+....
T Consensus 1185 ----------d-------~r~IRIWDa~~E~~~~d----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1185 ----------D-------VRSIRIWDAHKEQVVAD----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred ----------C-------eeEEEEEecccceeEee----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 1 35799999988766532 111235567777654443349999999999976 7765432
Q ss_pred e-eccccccCCCC--eEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEE--EEecCCC--C-CeeEEEEeeeCCC
Q 000709 155 R-DIPKQELDNKS--LVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVR--RYTGGHK--G-SISCLMTFMASSG 226 (1339)
Q Consensus 155 ~-~v~~~~~h~~~--V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~--~l~~gH~--~-~V~sl~wf~~spd 226 (1339)
. .+.....|++. |..+.+.+ .+.+ .|++|+.||.|++||++...... .+. .|. + ..+++. .++.
T Consensus 1244 ds~v~~~R~h~~~~~Iv~~slq~---~G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yGs~lTal~---VH~h 1315 (1387)
T KOG1517|consen 1244 DSLVCVYREHNDVEPIVHLSLQR---QGLG-ELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYGSALTALT---VHEH 1315 (1387)
T ss_pred cccceeecccCCcccceeEEeec---CCCc-ceeeeccCCeEEEEecccCcccccceee-eccccCccceeee---eccC
Confidence 2 23445677766 99999843 1233 69999999999999999742211 222 333 3 477775 7899
Q ss_pred CCEEEEEeCCCcEEEEeCCCCCccceeccccccc-ccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 227 EALLVSGGSDGLLILWSADHGQDSRELVPKLSLK-AHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 227 g~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~-gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
...+++|+. +.|+||++...+ +..+...-.+. ...+.+.|++||| -.-++++|+.|.+|.||.....
T Consensus 1316 apiiAsGs~-q~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP---~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1316 APIIASGSA-QLIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHP---HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CCeeeecCc-ceEEEEecChhh-hcccccCcccccCcCCCcceeeecc---hhHhhhhccCCceEEEeecCCc
Confidence 999999998 999999997443 33222211122 2335679999999 5778999999999999987654
No 198
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.30 E-value=4.5e-11 Score=134.51 Aligned_cols=216 Identities=13% Similarity=0.181 Sum_probs=154.2
Q ss_pred EecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccC
Q 000709 6 AFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRG 84 (1339)
Q Consensus 6 ~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~ 84 (1339)
.+.||+..|..++|+|... .||||+.|.+|.||.+-.+-+...+.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt---------------------------------- 121 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT---------------------------------- 121 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------------------------------
Confidence 5689999999999999654 89999999999999987543322221
Q ss_pred CceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC
Q 000709 85 GSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 85 g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
.+| ..+.+| ...|--++|+|...++|++++.|..+ .||+.+++. +.... |
T Consensus 122 epv-------------------------v~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea--li~l~-h 172 (472)
T KOG0303|consen 122 EPV-------------------------VELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA--LITLD-H 172 (472)
T ss_pred cce-------------------------EEEeec-ceeEEEEeecccchhhHhhccCCceEEEEeccCCce--eeecC-C
Confidence 011 122333 66688899999888888888777777 789998864 22233 9
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE---eCCCcEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG---GSDGLLI 240 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg---S~DgtVr 240 (1339)
.+.|.++.| +.||.++++.+.|..|||||.++++.+..-. +|.+.-..-+ .|-.++.++-+| ..++++-
T Consensus 173 pd~i~S~sf-----n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Ra--ifl~~g~i~tTGfsr~seRq~a 244 (472)
T KOG0303|consen 173 PDMVYSMSF-----NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARA--IFLASGKIFTTGFSRMSERQIA 244 (472)
T ss_pred CCeEEEEEe-----ccCCceeeeecccceeEEEcCCCCcEeeecc-cccCCCccee--EEeccCceeeecccccccccee
Confidence 999999999 7899999999999999999999999988774 7876433322 145577755444 2478899
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE-EEeCCCcEEEEECCCCe
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La-Sgs~Dg~IrIWDl~t~~ 299 (1339)
+||..+-..-. ...++. .+.+|.---|.+ |..++. +|-.|+.||-|.+....
T Consensus 245 Lwdp~nl~eP~---~~~elD-tSnGvl~PFyD~---dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 245 LWDPNNLEEPI---ALQELD-TSNGVLLPFYDP---DTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCcccccCcc---eeEEec-cCCceEEeeecC---CCCEEEEEecCCcceEEEEecCCC
Confidence 99977543211 112233 345566556666 555555 45579999999987655
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.30 E-value=4.1e-10 Score=127.67 Aligned_cols=165 Identities=19% Similarity=0.214 Sum_probs=133.3
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecC-------CceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVT-------MRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t-------~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg 191 (1339)
...+.++.|.++....+++|+.|.-| .|-+.. ++......+..|...|+++.| +|+|.++++|+++|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf-----~p~gelLASg~D~g 87 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRF-----SPDGELLASGGDGG 87 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEE-----cCCcCeeeecCCCc
Confidence 45688899998876688998888877 453221 133345556789999999999 78999999999999
Q ss_pred cEEEEECC--------C--------CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecc
Q 000709 192 VIRVLSMI--------S--------WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1339)
Q Consensus 192 tIrIWDl~--------t--------~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~ 255 (1339)
.|.+|... + +...+.+. +|...|..++| ++++.++++++.|..+++||+..|.....
T Consensus 88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr-~h~~diydL~W---s~d~~~l~s~s~dns~~l~Dv~~G~l~~~--- 160 (434)
T KOG1009|consen 88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLR-GHRDDIYDLAW---SPDSNFLVSGSVDNSVRLWDVHAGQLLAI--- 160 (434)
T ss_pred eEEEEEecCcCCccccchhhhCccceEEEEEec-ccccchhhhhc---cCCCceeeeeeccceEEEEEeccceeEee---
Confidence 99999866 2 33344444 89999999995 78999999999999999999999987654
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
+.+|...|..++|.| -.+++++-+.|...+.+++...+.++
T Consensus 161 ---~~dh~~yvqgvawDp---l~qyv~s~s~dr~~~~~~~~~~~~~~ 201 (434)
T KOG1009|consen 161 ---LDDHEHYVQGVAWDP---LNQYVASKSSDRHPEGFSAKLKQVIK 201 (434)
T ss_pred ---ccccccccceeecch---hhhhhhhhccCcccceeeeeeeeeee
Confidence 688999999999999 68899999999988888776544333
No 200
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.29 E-value=3.4e-11 Score=140.89 Aligned_cols=206 Identities=14% Similarity=0.106 Sum_probs=142.9
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-------~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS 234 (1339)
.....|+.+.|.|. |...|+++++||.|++|.+..+ ..-..+. +|...|+++.| .+--.+.|++++
T Consensus 625 ~Ngt~vtDl~WdPF----D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRf--HPLAadvLa~as 697 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPF----DDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRF--HPLAADVLAVAS 697 (1012)
T ss_pred ccCceeeecccCCC----ChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEe--cchhhhHhhhhh
Confidence 34668999999653 6778999999999999998753 3334454 89999999984 233467999999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
.|.+|++||+.+++.. ..+.+|.+.|.+++|+| +|+.+++.+.||+|++|+.++++.--. ......+..
T Consensus 698 yd~Ti~lWDl~~~~~~------~~l~gHtdqIf~~AWSp---dGr~~AtVcKDg~~rVy~Prs~e~pv~--Eg~gpvgtR 766 (1012)
T KOG1445|consen 698 YDSTIELWDLANAKLY------SRLVGHTDQIFGIAWSP---DGRRIATVCKDGTLRVYEPRSREQPVY--EGKGPVGTR 766 (1012)
T ss_pred ccceeeeeehhhhhhh------heeccCcCceeEEEECC---CCcceeeeecCceEEEeCCCCCCCccc--cCCCCccCc
Confidence 9999999999988743 34799999999999999 899999999999999999987653211 111112211
Q ss_pred CceeEEEeCCCCCEE-EEecCCe------EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 315 VASWCHPRAPNLDIL-TCVKDSH------IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 315 ~~V~svafspdg~iL-s~s~Dg~------LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
+ -.+.|.-+|+++ ..|.|.. +||..+....++.....+... .+.--.+.++.+.++.+
T Consensus 767 g--ARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------------s~LvP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 767 G--ARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------------SPLVPHYDYDSNVLFLT 831 (1012)
T ss_pred c--eeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC-------------ccccccccCCCceEEEe
Confidence 1 256777888866 5566652 677665432222211111111 11112234456778889
Q ss_pred EECCCeEEEEecCC
Q 000709 388 GTNVGVIISEFDPR 401 (1339)
Q Consensus 388 Gs~DG~IlriWd~~ 401 (1339)
|-.|..| .+|.+-
T Consensus 832 GKGD~~v-~~yEv~ 844 (1012)
T KOG1445|consen 832 GKGDRFV-NMYEVI 844 (1012)
T ss_pred cCCCceE-EEEEec
Confidence 9999987 677654
No 201
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=2.5e-11 Score=142.08 Aligned_cols=206 Identities=17% Similarity=0.183 Sum_probs=158.5
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEec------CCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV------TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG 191 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~------t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg 191 (1339)
|.+.|+.+.|++... .|++++.|+++ .|+++ ....+.+..+..|.++|.|+++ ++++..+++|+.||
T Consensus 293 ~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v-----~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV-----PSNGEHCYSGGIDG 366 (577)
T ss_pred chhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe-----cCCceEEEeeccCc
Confidence 377899999999887 89999999999 57772 2234456677899999999999 78999999999999
Q ss_pred cEEEEECCC------C----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc--cc--------
Q 000709 192 VIRVLSMIS------W----KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD--SR-------- 251 (1339)
Q Consensus 192 tIrIWDl~t------~----~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~--~~-------- 251 (1339)
+|+.|++.. . .....+. ||.+.|+.+. ++.....|++|+.||+|+.|+...... ..
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~---~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLA---LSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee-ccccceeeee---ecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 999996531 1 1223444 9999999886 788888999999999999998764322 00
Q ss_pred ------eec---------------------c------cccccc--cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 252 ------ELV---------------------P------KLSLKA--HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 252 ------~~~---------------------~------~~~l~g--H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
.+. . .....+ -...++-+.++| ...+.+++..|+.|+++|..
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~---~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP---TADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC---CCCeeEecccCCceeccccc
Confidence 000 0 000000 113467788888 67899999999999999999
Q ss_pred CCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCC
Q 000709 297 SFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1339)
Q Consensus 297 t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~ 343 (1339)
+++.++. ...|...++++++.|+|.+| +++.|++ +|.+...
T Consensus 520 ~~~~l~s------~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 520 TGKILHS------MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred ccccchh------eeeccceecceeecCCCceEEeecCCceeehhhccch
Confidence 9998776 68899999999999999865 7889996 6877643
No 202
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=1.5e-11 Score=140.80 Aligned_cols=269 Identities=16% Similarity=0.232 Sum_probs=194.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEc
Q 000709 14 IVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1339)
Q Consensus 14 V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~ 93 (1339)
-..+.|+.+|++|+.|+.-|.|-.+|+.++++..++...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~----------------------------------------- 170 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVM----------------------------------------- 170 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehh-----------------------------------------
Confidence 357889999999999999999999999998888877622
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEe
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFL 173 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~ 173 (1339)
..|.++.|-.+.+ +++++-...+.++|-..-+..|+. ....|..+.|+
T Consensus 171 ---------------------------Etv~Dv~~LHneq-~~AVAQK~y~yvYD~~GtElHClk----~~~~v~rLeFL 218 (545)
T KOG1272|consen 171 ---------------------------ETVRDVTFLHNEQ-FFAVAQKKYVYVYDNNGTELHCLK----RHIRVARLEFL 218 (545)
T ss_pred ---------------------------hhhhhhhhhcchH-HHHhhhhceEEEecCCCcEEeehh----hcCchhhhccc
Confidence 1234455555554 777777777777765544444432 23578889997
Q ss_pred eccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcccee
Q 000709 174 SRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL 253 (1339)
Q Consensus 174 P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~ 253 (1339)
| ..-+|++++..|.++--|+.+|+.+..+. ...+.+..++ .+|-...+-.|...|+|.+|...+...+.
T Consensus 219 P-----yHfLL~~~~~~G~L~Y~DVS~GklVa~~~-t~~G~~~vm~---qNP~NaVih~GhsnGtVSlWSP~skePLv-- 287 (545)
T KOG1272|consen 219 P-----YHFLLVAASEAGFLKYQDVSTGKLVASIR-TGAGRTDVMK---QNPYNAVIHLGHSNGTVSLWSPNSKEPLV-- 287 (545)
T ss_pred c-----hhheeeecccCCceEEEeechhhhhHHHH-ccCCccchhh---cCCccceEEEcCCCceEEecCCCCcchHH--
Confidence 6 45588999999999999999999998886 5667777776 67888899999999999999998776443
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEec
Q 000709 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVK 333 (1339)
Q Consensus 254 ~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~ 333 (1339)
.+..|.++|.++++.+ +|.|++|.|.|+.++|||++....++++. . ......+++|..|-+..+-.
T Consensus 288 ----KiLcH~g~V~siAv~~---~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~------t-p~~a~~ls~SqkglLA~~~G 353 (545)
T KOG1272|consen 288 ----KILCHRGPVSSIAVDR---GGRYMATTGLDRKVKIWDLRNFYQLHTYR------T-PHPASNLSLSQKGLLALSYG 353 (545)
T ss_pred ----HHHhcCCCcceEEECC---CCcEEeecccccceeEeeeccccccceee------c-CCCccccccccccceeeecC
Confidence 3678999999999999 89999999999999999999887666531 1 23445678887774443323
Q ss_pred CC-eEEEcc-CCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCe
Q 000709 334 DS-HIWAIE-HPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1339)
Q Consensus 334 Dg-~LWDi~-t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~ 393 (1339)
+. +||.=. .+.. ....+... ..-.. .|..+.|.| -..+|.+|+..|.
T Consensus 354 ~~v~iw~d~~~~s~----------~~~~pYm~-H~~~~-~V~~l~FcP-~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 354 DHVQIWKDALKGSG----------HGETPYMN-HRCGG-PVEDLRFCP-YEDVLGIGHAGGI 402 (545)
T ss_pred CeeeeehhhhcCCC----------CCCcchhh-hccCc-ccccceecc-HHHeeeccccCCc
Confidence 33 488422 2110 00011110 11122 788999999 4666888888776
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.5e-10 Score=139.43 Aligned_cols=168 Identities=13% Similarity=0.034 Sum_probs=113.3
Q ss_pred eeeeCCCCCeEEEEEecCcEE---EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCC
Q 000709 125 SPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS 200 (1339)
Q Consensus 125 slafspdg~~lLasgs~dg~I---~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t 200 (1339)
+++|+|||+.++++.+.++.. .||..++.... ...+...+.+..| +|||+.|+..+ .+|..+||++..
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~---lt~~~~~~~~~~w-----SpDG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ---LTSGAGNNTEPSW-----SPDGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe---eccCCCCcCCEEE-----CCCCCEEEEEECCCCCceEEEEEC
Confidence 468999998555555556644 33666655433 2345556788999 78999877665 578888887753
Q ss_pred C-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000709 201 W-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 201 ~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
. .....+ .+.. .+.. ++|+|+.|+.++.++ +.+||+.++..... ...+ ...++.|+| +++
T Consensus 324 ~~~~~~~l--~~~~--~~~~---~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~l------t~~~--~~~~~~~sP---dG~ 384 (429)
T PRK01742 324 SGGGASLV--GGRG--YSAQ---ISADGKTLVMINGDN-VVKQDLTSGSTEVL------SSTF--LDESPSISP---NGI 384 (429)
T ss_pred CCCCeEEe--cCCC--CCcc---CCCCCCEEEEEcCCC-EEEEECCCCCeEEe------cCCC--CCCCceECC---CCC
Confidence 2 222222 3433 3454 699999998888765 55599988764321 0111 234678999 899
Q ss_pred EEEEEeCCCcEEEEECC--CCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 280 QLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~--t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
+|+.++.++.+.+|++. +++..++ +..|...++..+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~------l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKAR------LPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEE------ccCCCCCCCCcccCCC
Confidence 99999999998888763 5666666 4677777888999885
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=8.8e-11 Score=134.05 Aligned_cols=197 Identities=21% Similarity=0.231 Sum_probs=140.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcC
Q 000709 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYD 94 (1339)
Q Consensus 15 ~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~D 94 (1339)
.+++|+.+|..|++|+.||++|||++.+...+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------------------------------- 183 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-------------------------------------------- 183 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH--------------------------------------------
Confidence 678899998899999999999999976533322222
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEee
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P 174 (1339)
.| ...|.++.|+|||+ +|++-+.|..-+|+.+++...........+.....+.|
T Consensus 184 ----------------------~~-~~eV~DL~FS~dgk-~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF-- 237 (398)
T KOG0771|consen 184 ----------------------AH-HAEVKDLDFSPDGK-FLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRF-- 237 (398)
T ss_pred ----------------------hh-cCccccceeCCCCc-EEEEecCCceEEEEeccCchhhhcCCcccchhhhhcee--
Confidence 11 44588899999998 88888888777999998854332222233445556777
Q ss_pred ccccCCC---CE--EEEEECCCcEEEEECCCCeE-----EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000709 175 RSAVGDV---PL--VAFGSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1339)
Q Consensus 175 ~s~Spdg---~~--LasGs~DgtIrIWDl~t~~~-----i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl 244 (1339)
+.|+ .+ ++.-..-+.|+.||+..++. .++.. .....|++++ .+.+|++++.|+.||.|-+++.
T Consensus 238 ---~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~---VS~dGkf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 238 ---SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLA---VSDDGKFLALGTMDGSVAIYDA 310 (398)
T ss_pred ---cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEE---EcCCCcEEEEeccCCcEEEEEe
Confidence 4444 22 23333456677777654432 11111 2345788887 8999999999999999999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
.+-++++- .-+.|..-|+.+.|+| +.+++++.+.|.+..+..+.
T Consensus 311 ~~lq~~~~-----vk~aH~~~VT~ltF~P---dsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 311 KSLQRLQY-----VKEAHLGFVTGLTFSP---DSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred ceeeeeEe-----ehhhheeeeeeEEEcC---CcCcccccccCCceeEEEEe
Confidence 88776543 2478999999999999 88999999999988887764
No 205
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=3.2e-10 Score=126.75 Aligned_cols=250 Identities=10% Similarity=0.050 Sum_probs=169.6
Q ss_pred CCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce----eeccc-cccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 119 VTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG----RDIPK-QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 119 ~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~----~~v~~-~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
|.++|.++.|+.+++ +|++|++|..+ +|++...-. +.+.. ...|...|.|++| .....++.+|..+++
T Consensus 55 H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F-----~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 55 HTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF-----DLENRFLYSGERWGT 128 (609)
T ss_pred hccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE-----ccCCeeEecCCCcce
Confidence 388999999999987 99999999988 666543211 12222 2455689999999 567889999999999
Q ss_pred EEEEECCCCeEEEEEec-CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000709 193 IRVLSMISWKLVRRYTG-GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1339)
Q Consensus 193 IrIWDl~t~~~i~~l~~-gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1339)
|.+.|+++.+.+..+.. ...+.|+.+. .+|..+.|++.+.++.|.+||.+....-.. .+.+.........+.|
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~---~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~---~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMD---QHPTDNTLIVVTRAKLVSFIDNRDRQNPIS---LVLPANSGKNFYTAEF 202 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecc---cCCCCceEEEEecCceEEEEeccCCCCCCc---eeeecCCCccceeeee
Confidence 99999999988887741 2234899997 788899999999999999999987652221 1112233445778999
Q ss_pred eccCCCCCEEEEEeCCCcEEEEECCCCee-EEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe---EEEccCCcccc
Q 000709 272 SRVMGGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH---IWAIEHPTYSA 347 (1339)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~---LWDi~t~~~~~ 347 (1339)
+|. ...+|++.+..+-+.+||.+.... +.+......+......-.++.|+|+|..+.+-.-+. +||+....+
T Consensus 203 ~P~--~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~-- 278 (609)
T KOG4227|consen 203 HPE--TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC-- 278 (609)
T ss_pred cCC--CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc--
Confidence 994 677999999999999999975431 111111111222111223788999988553333332 677765321
Q ss_pred cccCccccCCCCCCeEEccC-------CcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 348 LTRPLCELSSLVPPQVLAHH-------KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 348 ~~~~l~~~~~~~~~~tl~~~-------~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
.++..+ +...+.+++|-. .+.+++|+++=-| ++|.+.
T Consensus 279 --------------~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i-~~WklP 322 (609)
T KOG4227|consen 279 --------------FVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGI-HIWKLP 322 (609)
T ss_pred --------------eeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccce-EEEecC
Confidence 111111 112466777775 3459999998776 799754
No 206
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=5.6e-10 Score=123.12 Aligned_cols=323 Identities=14% Similarity=0.127 Sum_probs=189.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCC
Q 000709 16 KIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1339)
Q Consensus 16 ~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg 95 (1339)
-+.|||+|+|+|+++.- .+.|=|.++-+.++.|.. .+.|. ++-.. ...-.+.|+.+.++
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c--ldki~-------yieW~-----------ads~~ilC~~yk~~ 71 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC--LDKIV-------YIEWK-----------ADSCHILCVAYKDP 71 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH--HHHhh-------heeee-----------ccceeeeeeeeccc
Confidence 46899999999999655 788888877554333221 01111 11000 01134667777899
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEee
Q 000709 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1339)
Q Consensus 96 ~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P 174 (1339)
.|.+|++...+.. ..+......+.+++|||||+++|.+...+-.| +|.+.+.++..+ ......+..++|
T Consensus 72 ~vqvwsl~Qpew~-----ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~---~~pK~~~kg~~f-- 141 (447)
T KOG4497|consen 72 KVQVWSLVQPEWY-----CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL---PHPKTNVKGYAF-- 141 (447)
T ss_pred eEEEEEeecceeE-----EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe---cccccCceeEEE--
Confidence 9999999876543 22333356788999999999899888888777 888887765443 223445678889
Q ss_pred ccccCCCCEEEEEECC------------------------------------CcEEEEECCCCeEEEEEecCCCCCeeEE
Q 000709 175 RSAVGDVPLVAFGSSD------------------------------------GVIRVLSMISWKLVRRYTGGHKGSISCL 218 (1339)
Q Consensus 175 ~s~Spdg~~LasGs~D------------------------------------gtIrIWDl~t~~~i~~l~~gH~~~V~sl 218 (1339)
++||++.+.++.- ..+-+||---.-.+..+ ...-.+..+
T Consensus 142 ---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v 216 (447)
T KOG4497|consen 142 ---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFV 216 (447)
T ss_pred ---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEE
Confidence 5688887776541 22334442111111111 122355566
Q ss_pred EEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccc-------------ccccceEEEEeeccCCCCCEEEEEe
Q 000709 219 MTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK-------------AHDGGVVAVELSRVMGGSPQLITIG 285 (1339)
Q Consensus 219 ~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~-------------gH~~~V~svafsp~~~dg~~LaSgs 285 (1339)
. .+|.+++|+.|+.|+.+||.+--+.+...++.....+. .-.....++.|.|. ++=+.-.
T Consensus 217 ~---wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~----~~~a~~~ 289 (447)
T KOG4497|consen 217 E---WSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT----DLEAHIW 289 (447)
T ss_pred E---eccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC----ccccCcc
Confidence 5 68999999999999999997765544333221111111 01112345666662 1111111
Q ss_pred CCCcEEEEECC-CCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe-----EEEccCCcccccccCccccCCCC
Q 000709 286 ADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-----IWAIEHPTYSALTRPLCELSSLV 359 (1339)
Q Consensus 286 ~Dg~IrIWDl~-t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~-----LWDi~t~~~~~~~~~l~~~~~~~ 359 (1339)
.... .+|... +...++.+++......-...+.-++|++|..+++.-.|.. +||++..+.
T Consensus 290 ~~se-~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l-------------- 354 (447)
T KOG4497|consen 290 EESE-TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKL-------------- 354 (447)
T ss_pred ccch-hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhh--------------
Confidence 1111 122221 2234455555444444445677899999999998877763 788885421
Q ss_pred CCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCC
Q 000709 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 360 ~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~ 401 (1339)
...-... .+|....|+|..+.++++-+.... .+|.+.
T Consensus 355 --~avLiQk-~piraf~WdP~~prL~vctg~srL--Y~W~ps 391 (447)
T KOG4497|consen 355 --HAVLIQK-HPIRAFEWDPGRPRLVVCTGKSRL--YFWAPS 391 (447)
T ss_pred --hhhhhhc-cceeEEEeCCCCceEEEEcCCceE--EEEcCC
Confidence 1111122 279999999987776666555544 688654
No 207
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.20 E-value=5e-09 Score=124.97 Aligned_cols=298 Identities=13% Similarity=0.081 Sum_probs=177.6
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+.++..+...-..+.|+|||+++++++.||.|.++|+.+++.+.++..+....-..+++||++++.+..
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~----------- 97 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY----------- 97 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE-----------
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec-----------
Confidence 455555444334478999999999999999999999999999999998776666677799998887642
Q ss_pred CCceEEEEEcCCeEEEEEcCCcccccccccc--ccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPT--AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~--~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~ 160 (1339)
.++.+.++|..+.+.+...... ......+.+.++..++.++.+++.--+.+.+ .+|+...+.... ..
T Consensus 98 ---------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~ 167 (369)
T PF02239_consen 98 ---------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TT 167 (369)
T ss_dssp ---------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EE
T ss_pred ---------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-ee
Confidence 4789999999988766421111 0111345678888888887565555555666 448776533222 22
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecC---CCCCeeEEE-------EeeeCCCCCE
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFG-SSDGVIRVLSMISWKLVRRYTGG---HKGSISCLM-------TFMASSGEAL 229 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasG-s~DgtIrIWDl~t~~~i~~l~~g---H~~~V~sl~-------wf~~spdg~~ 229 (1339)
...........| +|++++++.+ ..++.|-++|.++++.+..+..+ |...+..+- |. ....+..
T Consensus 168 i~~g~~~~D~~~-----dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~-~~~~~~~ 241 (369)
T PF02239_consen 168 IKVGRFPHDGGF-----DPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWA-TSGLGYF 241 (369)
T ss_dssp EE--TTEEEEEE------TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEE-EEBSSSS
T ss_pred eccccccccccc-----CcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEe-eccccce
Confidence 334567778888 7899987775 45678999999999888776433 444444331 21 1112222
Q ss_pred EEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE----eCCCcEEEEECCCCeeEEEec
Q 000709 230 LVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI----GADKTLAIWDTVSFKELRRIK 305 (1339)
Q Consensus 230 LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg----s~Dg~IrIWDl~t~~~l~~~~ 305 (1339)
.++.-....+.+||..+.+.+++ +.....+ .-+..|| +++++.+. ...++|.++|.++.+.+.++.
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~------I~~~G~g-lFi~thP---~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKT------IPTQGGG-LFIKTHP---DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEE------EE-SSSS---EE--T---T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred ecccccCCccccchhhcCeEEEE------EECCCCc-ceeecCC---CCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 22222333555677777666554 4444455 6778899 78888887 456899999999987776642
Q ss_pred CCCcccccCCceeEEEeCCCCCEE--EEecCC-e--EEEccCC
Q 000709 306 PVPKLACHSVASWCHPRAPNLDIL--TCVKDS-H--IWAIEHP 343 (1339)
Q Consensus 306 ~~~~l~~H~~~V~svafspdg~iL--s~s~Dg-~--LWDi~t~ 343 (1339)
. +-...+..+.|+++|+.+ +....+ . +||..+.
T Consensus 312 ~-----~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 312 P-----GPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp H-----HHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred c-----cCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 1 111237789999999944 544333 4 6887765
No 208
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.20 E-value=3.4e-09 Score=119.30 Aligned_cols=243 Identities=14% Similarity=0.173 Sum_probs=163.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCc
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGS 86 (1339)
Q Consensus 9 gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~ 86 (1339)
+....+..+.|+.+...|..|+.||. ++++.+....... ...+++..+. -...+++..+.+
T Consensus 3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~---~~~~~~~IvEmLFSSSLvaiV~~~------------- 65 (391)
T KOG2110|consen 3 GKKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFS---KDTEGVSIVEMLFSSSLVAIVSIK------------- 65 (391)
T ss_pred CCCcceeeeeeccceeEEEccCCCce-eEEecCchHHhhc---ccCCCeEEEEeecccceeEEEecC-------------
Confidence 44567888889999988988988885 7787765333111 1123333333 112222222211
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccc-cccCCC
Q 000709 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPK-QELDNK 165 (1339)
Q Consensus 87 V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~-~~~h~~ 165 (1339)
....+++.+++....+- . -.....|.++.++.+ .|+++-.+.+.++|+++++...... ...+..
T Consensus 66 ------qpr~Lkv~~~Kk~~~IC----e--~~fpt~IL~VrmNr~---RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 66 ------QPRKLKVVHFKKKTTIC----E--IFFPTSILAVRMNRK---RLVVCLEESIYIYDIKDMKLLHTIETTPPNPK 130 (391)
T ss_pred ------CCceEEEEEcccCceEE----E--EecCCceEEEEEccc---eEEEEEcccEEEEecccceeehhhhccCCCcc
Confidence 12345666665543321 0 011345777777653 5677777777788999886532211 123344
Q ss_pred CeEEEEEeeccccCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-EEEE
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGS--SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILW 242 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs--~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt-VrVW 242 (1339)
.+.++.+ +..+.+++.=+ ..|.|.|||..+-+.+..+. .|.+.+-|++ |+++|.+|||+|..|+ |||+
T Consensus 131 gl~AlS~-----n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~-aH~~~lAala---fs~~G~llATASeKGTVIRVf 201 (391)
T KOG2110|consen 131 GLCALSP-----NNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN-AHKGPLAALA---FSPDGTLLATASEKGTVIRVF 201 (391)
T ss_pred ceEeecc-----CCCCceEEecCCCCCceEEEEEcccceeeeEEE-ecCCceeEEE---ECCCCCEEEEeccCceEEEEE
Confidence 4555555 56677887643 56899999999999999998 9999999998 8999999999999998 6899
Q ss_pred eCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
.+.+|+.+.+|.--. --..|.+++|+| ++++|++.|..++|+||.+..-.
T Consensus 202 ~v~~G~kl~eFRRG~----~~~~IySL~Fs~---ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 202 SVPEGQKLYEFRRGT----YPVSIYSLSFSP---DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EcCCccEeeeeeCCc----eeeEEEEEEECC---CCCeEEEecCCCeEEEEEecccc
Confidence 999999877652111 123588999999 89999999999999999987543
No 209
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.19 E-value=2.7e-10 Score=122.76 Aligned_cols=274 Identities=16% Similarity=0.147 Sum_probs=170.9
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
.-|.+++|++.+.+.. .....++...|+.+.--|++. +.+-+.|..+ .|+....... ..|.-.++++.
T Consensus 33 ~~G~V~~w~lqt~r~~----~~~r~~g~~~it~lq~~p~d~--l~tqgRd~~L~lw~ia~s~~i-----~i~Si~~nslg 101 (323)
T KOG0322|consen 33 SVGIVKMWVLQTERDL----PLIRLFGRLFITNLQSIPNDS--LDTQGRDPLLILWTIAYSAFI-----SIHSIVVNSLG 101 (323)
T ss_pred ccceEEEEEeecCccc----hhhhhhccceeeceeecCCcc--hhhcCCCceEEEEEccCcceE-----EEeeeeccccc
Confidence 4688999999988764 445546677888888888764 4555555555 6766554332 22333444555
Q ss_pred EeeccccCCC----CEEEEEECCC-cEEEEECCCCeEEEEEe---cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 172 FLSRSAVGDV----PLVAFGSSDG-VIRVLSMISWKLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 172 f~P~s~Spdg----~~LasGs~Dg-tIrIWDl~t~~~i~~l~---~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
|.+.+..+.+ ..++.-+... .+.+-|......+.... .+..+.++|..|-+-....-+++.|-.+|.|.+||
T Consensus 102 FCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 102 FCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred cccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 5332222222 1122111110 02222222222222111 24567888887531222223566788899999999
Q ss_pred CCCCCcccee----cccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeE
Q 000709 244 ADHGQDSREL----VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 244 l~tg~~~~~~----~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1339)
+.++..+-.+ +.......|..+|.++.|.+. ...=++|+.+..+..|+++.......+. ..+.-..-.|..
T Consensus 182 ~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~---~~rGisgga~dkl~~~Sl~~s~gslq~~--~e~~lknpGv~g 256 (323)
T KOG0322|consen 182 LSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS---CDRGISGGADDKLVMYSLNHSTGSLQIR--KEITLKNPGVSG 256 (323)
T ss_pred ccCCceeeccccccccccchhhccCcceeeeechh---hcCCcCCCccccceeeeeccccCccccc--ceEEecCCCccc
Confidence 9987443222 222335679999999999983 3445788888899999987432111110 112222345677
Q ss_pred EEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000709 320 HPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1339)
Q Consensus 320 vafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Ilr 396 (1339)
+..-||++++ ++|+|++ ||..++. .++..+..|.. .|.+++|+| +..++|.++.|+.| .
T Consensus 257 vrIRpD~KIlATAGWD~RiRVyswrtl---------------~pLAVLkyHsa-gvn~vAfsp-d~~lmAaaskD~rI-S 318 (323)
T KOG0322|consen 257 VRIRPDGKILATAGWDHRIRVYSWRTL---------------NPLAVLKYHSA-GVNAVAFSP-DCELMAAASKDARI-S 318 (323)
T ss_pred eEEccCCcEEeecccCCcEEEEEeccC---------------Cchhhhhhhhc-ceeEEEeCC-CCchhhhccCCceE-E
Confidence 8899999987 6899997 6777754 45778888887 899999999 57789999999998 8
Q ss_pred EecC
Q 000709 397 EFDP 400 (1339)
Q Consensus 397 iWd~ 400 (1339)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9974
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=1.2e-09 Score=133.38 Aligned_cols=233 Identities=15% Similarity=0.063 Sum_probs=145.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEec-C--c-EEEEEecCCceeeccccccCCCCeEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV-N--K-AIFLDLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~-d--g-~I~wD~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
+..|.+||...... .....+ ...+.+..|+|||+ .|+..+. + . +.+||+.+++...+.....+ ..+
T Consensus 183 ~~~i~i~d~dg~~~-----~~lt~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~ 252 (429)
T PRK01742 183 PYEVRVADYDGFNQ-----FIVNRS-SQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGA 252 (429)
T ss_pred eEEEEEECCCCCCc-----eEeccC-CCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCc
Confidence 46899999876542 122232 55788999999998 4555443 2 2 34679888765444333333 346
Q ss_pred EEEeeccccCCCCEEEEEE-CCCcEEEE--ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-CCCcEEEEeCC
Q 000709 170 MEFLSRSAVGDVPLVAFGS-SDGVIRVL--SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSAD 245 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs-~DgtIrIW--Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS-~DgtVrVWDl~ 245 (1339)
++| +|||++|+.++ .+|.+.|| |+.++.. ..+. .|...+.... ++|+|+.|+.++ .++...+|++.
T Consensus 253 ~~w-----SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt-~~~~~~~~~~---wSpDG~~i~f~s~~~g~~~I~~~~ 322 (429)
T PRK01742 253 PAF-----SPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLT-SGAGNNTEPS---WSPDGQSILFTSDRSGSPQVYRMS 322 (429)
T ss_pred eeE-----CCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeec-cCCCCcCCEE---ECCCCCEEEEEECCCCCceEEEEE
Confidence 789 88999888765 67866555 6666554 4454 5666677776 689999777555 57888999876
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
....... ..++.. .+..|+| ++++|+..+.++ +.+||+.+++..... ..+ ...++.|+||
T Consensus 323 ~~~~~~~------~l~~~~--~~~~~Sp---DG~~ia~~~~~~-i~~~Dl~~g~~~~lt------~~~--~~~~~~~sPd 382 (429)
T PRK01742 323 ASGGGAS------LVGGRG--YSAQISA---DGKTLVMINGDN-VVKQDLTSGSTEVLS------STF--LDESPSISPN 382 (429)
T ss_pred CCCCCeE------EecCCC--CCccCCC---CCCEEEEEcCCC-EEEEECCCCCeEEec------CCC--CCCCceECCC
Confidence 4332111 113333 4578999 888988887765 555999888754321 111 1246789999
Q ss_pred CCEE-EEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecC
Q 000709 326 LDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1339)
Q Consensus 326 g~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~ 380 (1339)
|++| .++.++. +|++.... ......+..+.. .++..+|||.
T Consensus 383 G~~i~~~s~~g~~~~l~~~~~~-------------G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 383 GIMIIYSSTQGLGKVLQLVSAD-------------GRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred CCEEEEEEcCCCceEEEEEECC-------------CCceEEccCCCC-CCCCcccCCC
Confidence 9966 4555653 66654211 112334444444 5777888883
No 211
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=5.2e-10 Score=127.86 Aligned_cols=192 Identities=17% Similarity=0.084 Sum_probs=141.6
Q ss_pred eeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe
Q 000709 124 ASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~ 202 (1339)
.+++|+.+|. .+++|+.||.+|+ ++.++. .+.....|...|.++.| ||||++|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~F-----S~dgk~lasig~d-~~~VW~~~~g~ 218 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDF-----SPDGKFLASIGAD-SARVWSVNTGA 218 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcch--hhhhhHhhcCcccccee-----CCCCcEEEEecCC-ceEEEEeccCc
Confidence 6899999997 9999999999954 766553 24456788999999999 8999999999999 89999999997
Q ss_pred EEEEEecCCCCCeeEEEEeeeCCCC-----CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000709 203 LVRRYTGGHKGSISCLMTFMASSGE-----ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1339)
Q Consensus 203 ~i~~l~~gH~~~V~sl~wf~~spdg-----~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1339)
.+..............+ .|+.++ .++++-..-+.|+.||+...+... +........-...|.+++.+. +
T Consensus 219 ~~a~~t~~~k~~~~~~c--RF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~-~l~~~~~~~~~~siSsl~VS~---d 292 (398)
T KOG0771|consen 219 ALARKTPFSKDEMFSSC--RFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN-FLRLRKKIKRFKSISSLAVSD---D 292 (398)
T ss_pred hhhhcCCcccchhhhhc--eecccCCCceEEEEEecCCCCceeEEEeeeecccc-ccchhhhhhccCcceeEEEcC---C
Confidence 77766533333444333 256665 334444556778888776543311 111111122234699999998 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCC
Q 000709 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDS 335 (1339)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg 335 (1339)
|++++.|+.||.|-|++..+.+.++.+ -+.|...|+.+.|+|+.+.+ +.+.|.
T Consensus 293 Gkf~AlGT~dGsVai~~~~~lq~~~~v-----k~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 293 GKFLALGTMDGSVAIYDAKSLQRLQYV-----KEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred CcEEEEeccCCcEEEEEeceeeeeEee-----hhhheeeeeeEEEcCCcCcccccccCC
Confidence 999999999999999999988877765 36899999999999997755 445554
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.14 E-value=2.4e-09 Score=118.40 Aligned_cols=203 Identities=12% Similarity=0.078 Sum_probs=150.5
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCc-eeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~-~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
..+|+|.+|++|+. .++++..+..+ ++.....+ ......+..|...|++|+| +|..+.|++|+.|..-+||.
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdW-----ap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDW-----APKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEee-----cCCCCceeEccCCCCccccc
Confidence 44689999999997 88888888777 44444333 4455667889999999999 77899999999999999999
Q ss_pred C-CC--CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 198 M-IS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 198 l-~t--~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
. .. ++..-.+. .|+...+++.| +|.++.|++||.-+.|.||-+...... |+.+..-+.+...|++++|||
T Consensus 84 ~~~~~~WkptlvLl-RiNrAAt~V~W---sP~enkFAVgSgar~isVcy~E~ENdW--WVsKhikkPirStv~sldWhp- 156 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLL-RINRAATCVKW---SPKENKFAVGSGARLISVCYYEQENDW--WVSKHIKKPIRSTVTSLDWHP- 156 (361)
T ss_pred cCCCCeeccceeEE-EeccceeeEee---cCcCceEEeccCccEEEEEEEecccce--ehhhhhCCccccceeeeeccC-
Confidence 8 33 34444555 79999999984 899999999999999999988765443 223333456778899999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCe--------eEEEecCC----CcccccCCceeEEEeCCCCCEEE-EecCCeE
Q 000709 275 MGGSPQLITIGADKTLAIWDTVSFK--------ELRRIKPV----PKLACHSVASWCHPRAPNLDILT-CVKDSHI 337 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~--------~l~~~~~~----~~l~~H~~~V~svafspdg~iLs-~s~Dg~L 337 (1339)
++-+|+.||.|+..|++..--.. ..-.-.+. .......+.+..+.|+|+|..|+ .+.|+.+
T Consensus 157 --nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 157 --NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred --CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCce
Confidence 78899999999999999642100 00000000 01234556788999999998775 6778764
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.1e-08 Score=114.67 Aligned_cols=195 Identities=14% Similarity=0.119 Sum_probs=126.8
Q ss_pred CCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCcee-----------eccccccCCCCeEEEEEeeccccCCCCEEEEEE
Q 000709 121 SGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGR-----------DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1339)
Q Consensus 121 ~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~-----------~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs 188 (1339)
..|.|++|-|.+..-|++|+..|+.+| +-.+.... .+....+| .+|+++.| .+||..+++++
T Consensus 141 rnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw-----n~dgt~l~tAS 214 (445)
T KOG2139|consen 141 RNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW-----NEDGTILVTAS 214 (445)
T ss_pred cceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEE-----cCCCCEEeecc
Confidence 458899999988779999999999999 33322211 11122233 68999999 78999999988
Q ss_pred -CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-CCccceecccccccccccce
Q 000709 189 -SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGV 266 (1339)
Q Consensus 189 -~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t-g~~~~~~~~~~~l~gH~~~V 266 (1339)
.|..|+|||..++..+.... ...+.++-+. ++||+.+|+.++-|+..++|+... ..+.+ ..--.+.|
T Consensus 215 ~gsssi~iWdpdtg~~~pL~~-~glgg~slLk---wSPdgd~lfaAt~davfrlw~e~q~wt~er-------w~lgsgrv 283 (445)
T KOG2139|consen 215 FGSSSIMIWDPDTGQKIPLIP-KGLGGFSLLK---WSPDGDVLFAATCDAVFRLWQENQSWTKER-------WILGSGRV 283 (445)
T ss_pred cCcceEEEEcCCCCCcccccc-cCCCceeeEE---EcCCCCEEEEecccceeeeehhcccceecc-------eeccCCce
Confidence 56789999999987765553 3456777776 699999999999999999995443 32221 11223479
Q ss_pred EEEEeeccCCCCCE-EEEEeCCCcEEEEECCC--Ce--------eEE---EecCCCcccc---cCCceeEEEeCCCCCEE
Q 000709 267 VAVELSRVMGGSPQ-LITIGADKTLAIWDTVS--FK--------ELR---RIKPVPKLAC---HSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 267 ~svafsp~~~dg~~-LaSgs~Dg~IrIWDl~t--~~--------~l~---~~~~~~~l~~---H~~~V~svafspdg~iL 329 (1339)
...+|+| +|.+ |.+.+..-.|+-..... .. .+. .+.......+ -.+..-+++|.|.|.++
T Consensus 284 qtacWsp---cGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyL 360 (445)
T KOG2139|consen 284 QTACWSP---CGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYL 360 (445)
T ss_pred eeeeecC---CCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEE
Confidence 9999999 5554 44555444333222111 10 010 1111111111 23466799999999988
Q ss_pred EEecCC
Q 000709 330 TCVKDS 335 (1339)
Q Consensus 330 s~s~Dg 335 (1339)
+....+
T Consensus 361 av~fKg 366 (445)
T KOG2139|consen 361 AVIFKG 366 (445)
T ss_pred EEEEcC
Confidence 776443
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.12 E-value=1.4e-09 Score=135.50 Aligned_cols=191 Identities=17% Similarity=0.303 Sum_probs=151.5
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccc
Q 000709 179 GDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLS 258 (1339)
Q Consensus 179 pdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~ 258 (1339)
-+...++.++.++.+.+||...+.....+.........++.-+.++++.-++++|+.-+.|.+|+...... ...
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~------p~~ 170 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK------PIR 170 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC------cce
Confidence 46788999999999999999887776665411111222222224788888999999999999999873221 114
Q ss_pred ccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCe--
Q 000709 259 LKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSH-- 336 (1339)
Q Consensus 259 l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~-- 336 (1339)
+.||++.+.++.|+- ++.++++.|+|+++|+|++.+.+... ...-+|+..||.+.|+|+ .++++++|.+
T Consensus 171 l~GHeG~iF~i~~s~---dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~n-~i~t~gedctcr 241 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSL---DGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLPN-RIITVGEDCTCR 241 (967)
T ss_pred ecccCCceEEEEEcc---CCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEeccc-eeEEeccceEEE
Confidence 789999999999998 89999999999999999999887654 235799999999999999 8889999996
Q ss_pred EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 337 IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 337 LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
+|+.+... ..++..|....||.++.++ +...+.++++||.+ ++|+...
T Consensus 242 vW~~~~~~----------------l~~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~l-k~~~l~~ 289 (967)
T KOG0974|consen 242 VWGVNGTQ----------------LEVYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTL-KLWDLNG 289 (967)
T ss_pred EEecccce----------------ehhhhhhhhcceeEEEEcC-CceEEEeeccCcch-hhhhhhc
Confidence 89766321 2356677777899999999 67889999999997 8999765
No 215
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.12 E-value=7.2e-09 Score=130.26 Aligned_cols=263 Identities=16% Similarity=0.196 Sum_probs=162.9
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCcee-----eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGR-----DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~-----~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtI 193 (1339)
...+..++.++....++++|++||+| +||.+..... ...+....+..+.++.+ -+.++.+|.++.||.|
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~-----~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTM-----CGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEe-----ccCCCeEEEEcCCCeE
Confidence 56666777776663499999999999 6776543221 22222334678888888 5679999999999999
Q ss_pred EEEECCCC-------eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccce
Q 000709 194 RVLSMISW-------KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGV 266 (1339)
Q Consensus 194 rIWDl~t~-------~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V 266 (1339)
++.++... .+.+.......+.+.++..|........|+.+..-+.|..||+++....... + ..-..+.|
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l--k--~~~~hG~v 1198 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL--K--NQLRHGLV 1198 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh--h--cCccccce
Confidence 99998751 2222222123455666654423333347888889999999999987655432 1 22234679
Q ss_pred EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC---CC-EEEEecCC----eEE
Q 000709 267 VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN---LD-ILTCVKDS----HIW 338 (1339)
Q Consensus 267 ~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd---g~-iLs~s~Dg----~LW 338 (1339)
++++.+| .+.+++.|+..|.+.+||++=+.++..+. ..+...+..+..+|- .. .++++..+ .+|
T Consensus 1199 TSi~idp---~~~WlviGts~G~l~lWDLRF~~~i~sw~-----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1199 TSIVIDP---WCNWLVIGTSRGQLVLWDLRFRVPILSWE-----HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred eEEEecC---CceEEEEecCCceEEEEEeecCceeeccc-----CcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 9999999 78899999999999999999887777653 233345554554442 23 44554422 389
Q ss_pred EccCCccccc---ccCccccCCCCCCe-EEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 339 AIEHPTYSAL---TRPLCELSSLVPPQ-VLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 339 Di~t~~~~~~---~~~l~~~~~~~~~~-tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
++.++..... ......+....+.. .-+++.-..+.|.-.. .+-++.+|+.|+.| |.||...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~--~~~~~ltggsd~kI-R~wD~~~ 1335 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE--KNGFLLTGGSDMKI-RKWDPTR 1335 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc--CCceeeecCCccce-eeccCCC
Confidence 9987633111 00000111111110 0001222223333333 34568889999997 8999763
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.11 E-value=2.9e-08 Score=110.12 Aligned_cols=244 Identities=15% Similarity=0.204 Sum_probs=154.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEE
Q 000709 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
...+++|+.|...++.|..+| .+||+.+.-+...+-+ .+..+...+. -...+|+-.+... .-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~-~~~~G~~~veMLfR~N~laLVGGg~--------------~p 70 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ-FIDGGFKIVEMLFRSNYLALVGGGS--------------RP 70 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc-cccCchhhhhHhhhhceEEEecCCC--------------CC
Confidence 455699999999998886655 7999987532222222 1111211111 1222222211000 01
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEec-CCceeeccccccCCCCeEE
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLV-TMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~-t~~~~~v~~~~~h~~~V~~ 169 (1339)
.|....+.|||-...+++. .-.....|.++.++++ .+++.-.+.+.+|... ..+...............+
T Consensus 71 ky~pNkviIWDD~k~~~i~------el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCII------ELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCS 141 (346)
T ss_pred CCCCceEEEEecccCcEEE------EEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEe
Confidence 1235689999955555542 1222567888888774 4666777777777544 2221111111222333444
Q ss_pred EEEeeccccCCCCEEEE-EECCCcEEEEECCCCeE--EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-EEEEeCC
Q 000709 170 MEFLSRSAVGDVPLVAF-GSSDGVIRVLSMISWKL--VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL-LILWSAD 245 (1339)
Q Consensus 170 vaf~P~s~Spdg~~Las-Gs~DgtIrIWDl~t~~~--i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt-VrVWDl~ 245 (1339)
+.- ..+..+|+. |-.-|.|+|-|+...+. ...+. +|...|.|++ .+.+|.++||+|..|+ |||||..
T Consensus 142 ~~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~-AH~s~Iacv~---Ln~~Gt~vATaStkGTLIRIFdt~ 212 (346)
T KOG2111|consen 142 LCP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN-AHDSDIACVA---LNLQGTLVATASTKGTLIRIFDTE 212 (346)
T ss_pred ecC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEE-cccCceeEEE---EcCCccEEEEeccCcEEEEEEEcC
Confidence 433 233444444 44679999999976544 24444 9999999998 8999999999999998 7899999
Q ss_pred CCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 246 HGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
+|..+.++. +| ....|.+++|+| +..+|+++|+.|+|+|+.++..
T Consensus 213 ~g~~l~E~R-----RG~d~A~iy~iaFSp---~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 213 DGTLLQELR-----RGVDRADIYCIAFSP---NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred CCcEeeeee-----cCCchheEEEEEeCC---CccEEEEEcCCCeEEEEEeecC
Confidence 999877642 12 234599999999 8999999999999999998753
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.11 E-value=4.2e-09 Score=116.53 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=176.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+..|.---..|+|.+|++|+..+|.+..+..|.|+.....++-..+
T Consensus 3 ~~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~---------------------------------- 48 (361)
T KOG1523|consen 3 VVVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPA---------------------------------- 48 (361)
T ss_pred eEEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceec----------------------------------
Confidence 3445555678999999999999999999999999987653321111
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEe-cCCceeeccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDL-VTMRGRDIPKQE 161 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~-~t~~~~~v~~~~ 161 (1339)
.++.. |+..|++++|+|..+ .|++|+.|+.- +|.. ..++.+....+.
T Consensus 49 -----------------------------htls~-Hd~~vtgvdWap~sn-rIvtcs~drnayVw~~~~~~~WkptlvLl 97 (361)
T KOG1523|consen 49 -----------------------------HTLSE-HDKIVTGVDWAPKSN-RIVTCSHDRNAYVWTQPSGGTWKPTLVLL 97 (361)
T ss_pred -----------------------------eehhh-hCcceeEEeecCCCC-ceeEccCCCCccccccCCCCeeccceeEE
Confidence 11112 256688899999997 67777766655 7754 555555555667
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL---VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~---i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
.++...+||.| +|.++.|++||....|.||-++...- -+.+...+...|.+++| +|++-+|+.||.|+.
T Consensus 98 RiNrAAt~V~W-----sP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldW---hpnnVLlaaGs~D~k 169 (361)
T KOG1523|consen 98 RINRAATCVKW-----SPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDW---HPNNVLLAAGSTDGK 169 (361)
T ss_pred EeccceeeEee-----cCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeec---cCCcceecccccCcc
Confidence 78999999999 78999999999999999998865322 23334468899999995 788899999999999
Q ss_pred EEEEeCCCCCc-----ccee------c-ccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe-eEEEec
Q 000709 239 LILWSADHGQD-----SREL------V-PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK-ELRRIK 305 (1339)
Q Consensus 239 VrVWDl~tg~~-----~~~~------~-~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~-~l~~~~ 305 (1339)
.||+..--... -.-+ . ...++....+.|..+.|+| +|..|+-.+.|.++.+=|..... .+.+
T Consensus 170 ~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~---sG~~lawv~Hds~v~~~da~~p~~~v~~-- 244 (361)
T KOG1523|consen 170 CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP---SGNRLAWVGHDSTVSFVDAAGPSERVQS-- 244 (361)
T ss_pred eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC---CCCEeeEecCCCceEEeecCCCchhccc--
Confidence 99996421100 0000 0 0112334567899999999 89999999999999999987654 2222
Q ss_pred CCCcccccCCceeEEEeCCCCCEEEEecCC
Q 000709 306 PVPKLACHSVASWCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 306 ~~~~l~~H~~~V~svafspdg~iLs~s~Dg 335 (1339)
+..-.-+..++.|-.+..+++++.|.
T Consensus 245 ----~~~~~lP~ls~~~ise~~vv~ag~~c 270 (361)
T KOG1523|consen 245 ----VATAQLPLLSVSWISENSVVAAGYDC 270 (361)
T ss_pred ----hhhccCCceeeEeecCCceeecCCCC
Confidence 11222455577776666677777664
No 218
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.10 E-value=2.5e-09 Score=124.70 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=137.4
Q ss_pred EEEE-cCCeEEEEEcCCccccccccccccccCCCCeeeeee-----CCCCCeEEEEEecCcEEEE-EecCCceeecccc-
Q 000709 89 QVNF-YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPP-----STKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ- 160 (1339)
Q Consensus 89 sVaF-~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slaf-----spdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~- 160 (1339)
.++| -...+.+|+...+..+...+......-.+ -.|=.| .+++- -+.+|-.-|-+.| |....+...+...
T Consensus 137 ~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~-P~cHdfn~~~a~~~g~-dllIGf~tGqvq~idp~~~~~sklfne~ 214 (636)
T KOG2394|consen 137 RLCFNVGRELYVYSYRGAADLSKPIDKREYKGTS-PTCHDFNSFTATPKGL-DLLIGFTTGQVQLIDPINFEVSKLFNEE 214 (636)
T ss_pred EEEEecCCeEEEEEccCcchhccchhhhcccCCC-CceecccccccCCCCc-ceEEeeccCceEEecchhhHHHHhhhhc
Confidence 3455 45678889888543332111111111011 111222 34453 4556666666655 5544322221111
Q ss_pred -ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--------------CeEEEEEe-cC------------CC
Q 000709 161 -ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--------------WKLVRRYT-GG------------HK 212 (1339)
Q Consensus 161 -~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t--------------~~~i~~l~-~g------------H~ 212 (1339)
......|+|+.|.|. +...++..-.+|.+++||..- +....... .. -.
T Consensus 215 r~i~ktsvT~ikWvpg----~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 215 RLINKSSVTCIKWVPG----SDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred ccccccceEEEEEEeC----CCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 223578999999873 455667777899999997631 11111110 01 12
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEE
Q 000709 213 GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI 292 (1339)
Q Consensus 213 ~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrI 292 (1339)
+.|+.. .|++||++||+.|.||.+||||..+.+.+.. ++.--++..|++|+| |++||++|+.|-.|.|
T Consensus 291 g~in~f---~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~------mkSYFGGLLCvcWSP---DGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 291 GSINEF---AFSPDGKYLATVSQDGFLRIFDFDTQELLGV------MKSYFGGLLCVCWSP---DGKYIVTGGEDDLVTV 358 (636)
T ss_pred ccccce---eEcCCCceEEEEecCceEEEeeccHHHHHHH------HHhhccceEEEEEcC---CccEEEecCCcceEEE
Confidence 234444 4889999999999999999999988765432 344457799999999 9999999999999999
Q ss_pred EECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 293 WDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 293 WDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
|.+...+.+.+ -.+|..+|+.|+|.|
T Consensus 359 wSf~erRVVAR------GqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 359 WSFEERRVVAR------GQGHKSWVSVVAFDP 384 (636)
T ss_pred EEeccceEEEe------ccccccceeeEeecc
Confidence 99999988877 689999999999998
No 219
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.10 E-value=2e-08 Score=113.29 Aligned_cols=236 Identities=12% Similarity=0.142 Sum_probs=165.6
Q ss_pred CeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC--cEEEEECC
Q 000709 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG--VIRVLSMI 199 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg--tIrIWDl~ 199 (1339)
.+..+.|+.+.. +|..|+.||.-.+....... .......+..|-.+-| ...+++..+.+. .+++++++
T Consensus 7 ti~~~~~Nqd~~-~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLF-------SSSLvaiV~~~qpr~Lkv~~~K 76 (391)
T KOG2110|consen 7 TINFIGFNQDST-LLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLF-------SSSLVAIVSIKQPRKLKVVHFK 76 (391)
T ss_pred ceeeeeecccee-EEEccCCCceeEEecCchHH--hhcccCCCeEEEEeec-------ccceeEEEecCCCceEEEEEcc
Confidence 455666888886 99999999988775443211 1112223445666667 345666666544 49999999
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
.+..+..+. ....|.++. . +.+.|+.+=.+ .|.|||+++-+.++++ .+...|..++.++.+++ ++.
T Consensus 77 k~~~ICe~~--fpt~IL~Vr---m--Nr~RLvV~Lee-~IyIydI~~MklLhTI---~t~~~n~~gl~AlS~n~---~n~ 142 (391)
T KOG2110|consen 77 KKTTICEIF--FPTSILAVR---M--NRKRLVVCLEE-SIYIYDIKDMKLLHTI---ETTPPNPKGLCALSPNN---ANC 142 (391)
T ss_pred cCceEEEEe--cCCceEEEE---E--ccceEEEEEcc-cEEEEecccceeehhh---hccCCCccceEeeccCC---CCc
Confidence 888887774 667888886 2 44567666555 4999999998877653 22345667787777776 566
Q ss_pred EEEEEe--CCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe---EEEccCCcccccccCcc
Q 000709 280 QLITIG--ADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH---IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 280 ~LaSgs--~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~---LWDi~t~~~~~~~~~l~ 353 (1339)
+++--+ ..|.|.+||..+-+.+.. +..|.+.+-+++|+++|.+| ++|+.|+ |+.+.++..
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~------I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-------- 208 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNT------INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-------- 208 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeE------EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE--------
Confidence 777433 479999999998887777 57999999999999999987 5677786 566665421
Q ss_pred ccCCCCCCeEEccC-CcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCC
Q 000709 354 ELSSLVPPQVLAHH-KKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLP 404 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~-~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p 404 (1339)
...|+.. .-..|++++|||+ ..+|++.++.++| ++|.+....
T Consensus 209 -------l~eFRRG~~~~~IySL~Fs~d-s~~L~~sS~TeTV-HiFKL~~~~ 251 (391)
T KOG2110|consen 209 -------LYEFRRGTYPVSIYSLSFSPD-SQFLAASSNTETV-HIFKLEKVS 251 (391)
T ss_pred -------eeeeeCCceeeEEEEEEECCC-CCeEEEecCCCeE-EEEEecccc
Confidence 2222221 1237999999995 6678888899997 899877543
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.09 E-value=2.5e-09 Score=124.59 Aligned_cols=195 Identities=16% Similarity=0.214 Sum_probs=133.9
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEec--------------CCce
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLV--------------TMRG 154 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~--------------t~~~ 154 (1339)
|.|.-|.+.+.|....+..+ ............|+|+.|-|.++.++++.-.++.+ .+|.. .+..
T Consensus 190 IGf~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~ 268 (636)
T KOG2394|consen 190 IGFTTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQ 268 (636)
T ss_pred EeeccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCe
Confidence 34456666666654422211 11111112246799999999777677776666655 33321 0000
Q ss_pred ee------------ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEee
Q 000709 155 RD------------IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1339)
Q Consensus 155 ~~------------v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~ 222 (1339)
.. +..+......|...+| +|||++|++.+.||.+||||+.+.+++..+. .--+...|++|
T Consensus 269 f~i~t~ksk~~rNPv~~w~~~~g~in~f~F-----S~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcW-- 340 (636)
T KOG2394|consen 269 FAILTSKSKKTRNPVARWHIGEGSINEFAF-----SPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCW-- 340 (636)
T ss_pred eEEeeeeccccCCccceeEeccccccceeE-----cCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEE--
Confidence 00 1111222446777777 8899999999999999999999887766654 55578899984
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC---------------------------
Q 000709 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM--------------------------- 275 (1339)
Q Consensus 223 ~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~--------------------------- 275 (1339)
+|||++|++|+.|--|.||.+..++.+.. -+||..+|..|+|.|..
T Consensus 341 -SPDGKyIvtGGEDDLVtVwSf~erRVVAR------GqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 341 -SPDGKYIVTGGEDDLVTVWSFEERRVVAR------GQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred -cCCccEEEecCCcceEEEEEeccceEEEe------ccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 99999999999999999999998876654 58999999999998420
Q ss_pred -----C-------------CCCEEEEEeCCCcEEEEECCCCee
Q 000709 276 -----G-------------GSPQLITIGADKTLAIWDTVSFKE 300 (1339)
Q Consensus 276 -----~-------------dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1339)
. ..-.|.+.+.|..+.+||+.....
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 0 012577889999999999976543
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.9e-08 Score=118.05 Aligned_cols=194 Identities=14% Similarity=0.180 Sum_probs=139.1
Q ss_pred EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg 247 (1339)
+.+.+| .+...+++.| ....|+-++++.|+.+.-+. ...+.++++. .++...+|++|+.||.|-+||.+..
T Consensus 137 RDm~y~----~~scDly~~g-sg~evYRlNLEqGrfL~P~~-~~~~~lN~v~---in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 137 RDMKYH----KPSCDLYLVG-SGSEVYRLNLEQGRFLNPFE-TDSGELNVVS---INEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred cccccc----CCCccEEEee-cCcceEEEEccccccccccc-cccccceeee---ecCccceEEecccCceEEEecchhh
Confidence 446664 3455555554 45568889999999988886 6668899887 6788889999999999999999988
Q ss_pred Cccceecccccccccccc-----eEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC--CceeEE
Q 000709 248 QDSRELVPKLSLKAHDGG-----VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS--VASWCH 320 (1339)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~-----V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~--~~V~sv 320 (1339)
..+..+.....+..|.+. |+++.|+- ++-.+++|..+|.|.|||+++.+++.. ..|. ..|..+
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d---~gL~~aVGts~G~v~iyDLRa~~pl~~-------kdh~~e~pi~~l 277 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRD---DGLHVAVGTSTGSVLIYDLRASKPLLV-------KDHGYELPIKKL 277 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecC---CceeEEeeccCCcEEEEEcccCCceee-------cccCCccceeee
Confidence 766554333344455554 99999986 789999999999999999999888765 3444 467788
Q ss_pred EeCCCCC-EEEEecCCe---EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEE
Q 000709 321 PRAPNLD-ILTCVKDSH---IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIIS 396 (1339)
Q Consensus 321 afspdg~-iLs~s~Dg~---LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Ilr 396 (1339)
.|.+.+. -...+.|.+ |||-.++.. ...+.+.. .+..+++-| ++-+++++-.++.+..
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~---------------~asiEpt~--~lND~C~~p-~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKP---------------MASIEPTS--DLNDFCFVP-GSGMFFTANESSKMHT 339 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCc---------------eeeccccC--CcCceeeec-CCceEEEecCCCccee
Confidence 8877633 223344553 899887632 22333332 477888888 5566888888877643
Q ss_pred Ee
Q 000709 397 EF 398 (1339)
Q Consensus 397 iW 398 (1339)
.+
T Consensus 340 yy 341 (703)
T KOG2321|consen 340 YY 341 (703)
T ss_pred EE
Confidence 33
No 222
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.06 E-value=1.9e-09 Score=124.54 Aligned_cols=274 Identities=14% Similarity=0.200 Sum_probs=184.3
Q ss_pred ccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEE
Q 000709 117 SNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV 195 (1339)
Q Consensus 117 ~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrI 195 (1339)
..|.++|..+.|...|. ++++|++|..+ +||+.+++. .+....+|...|....|.|. .+...+++++.||.+++
T Consensus 139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~-~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSP-KLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVRV 213 (559)
T ss_pred cCCCCccceeeecccCc-eeeccCccceEEeehhhccCc-ccccccccccchhhhhccCC---CCCcCceeccccCceee
Confidence 34588999999999998 99999999888 778887654 33345678888888889884 45677999999999999
Q ss_pred EECC-CCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccccc---ceEEE
Q 000709 196 LSMI-SWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDG---GVVAV 269 (1339)
Q Consensus 196 WDl~-t~~~i--~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~---~V~sv 269 (1339)
=.+. ++.+. +.+ ..|.+.|..++. .+-....|.|++.|+.|.-.|++.+.....+. .-..+.. ..+.+
T Consensus 214 s~i~~t~~~e~t~rl-~~h~g~vhklav--~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 214 SEILETGYVENTKRL-APHEGPVHKLAV--EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---CREADEKERVGLYTI 287 (559)
T ss_pred eeeccccceecceec-ccccCccceeee--cCCCCCcccccccccceeeeeeccCCccceee---eeccCCccceeeeeE
Confidence 8764 33332 233 479999999972 34455689999999999999999876543332 1233333 56889
Q ss_pred EeeccCCCCCEEEEEeCCCcEEEEECCCCee------EEEecCCCcccccCCceeEEEeCCCC-CEEEEecCCeEEEccC
Q 000709 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFKE------LRRIKPVPKLACHSVASWCHPRAPNL-DILTCVKDSHIWAIEH 342 (1339)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~------l~~~~~~~~l~~H~~~V~svafspdg-~iLs~s~Dg~LWDi~t 342 (1339)
+.+| .....+++|+.|-.+++||.+.-.. +..+-+..-.......|++++|+.++ .+++.-.|-.||-.+.
T Consensus 288 a~~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 288 AVDP--RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred ecCC--CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 9999 3567999999999999999875332 23333322223334578999999664 4777666665444332
Q ss_pred CcccccccC--ccccCCCCCCeEEccCCc-ccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 343 PTYSALTRP--LCELSSLVPPQVLAHHKK-LRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 343 ~~~~~~~~~--l~~~~~~~~~~tl~~~~~-~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
. ......+ ...... -....+++|.. ..|.++-|-.-...++++|++-|.| ++|+-.....+
T Consensus 366 ~-~~~G~~p~~~s~~~~-~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhI-FiW~K~t~eii 429 (559)
T KOG1334|consen 366 S-MGDGSEPDPSSPREQ-YVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHI-FIWDKKTGEII 429 (559)
T ss_pred c-cccCCCCCCCcchhh-ccchhhcccccccccceeeeccCccceEEecCccceE-EEEecchhHHH
Confidence 1 1111000 000001 11223556653 2477777664367889999999998 79987654433
No 223
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=9.5e-05 Score=97.80 Aligned_cols=231 Identities=13% Similarity=0.150 Sum_probs=132.2
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeC---C---CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC
Q 000709 213 GSISCLMTFMASSGEALLVSGGS---D---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA 286 (1339)
Q Consensus 213 ~~V~sl~wf~~spdg~~LaSgS~---D---gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~ 286 (1339)
..-..++| -.||.+||+.+. + +.+|||+-. |..... -..-.+--.+++|.| .|.+|++...
T Consensus 210 d~~~~ISW---RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~st------SE~v~gLe~~l~WrP---sG~lIA~~q~ 276 (928)
T PF04762_consen 210 DGRVRISW---RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQST------SEPVDGLEGALSWRP---SGNLIASSQR 276 (928)
T ss_pred CCceEEEE---CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEec------cccCCCccCCccCCC---CCCEEEEEEE
Confidence 34455654 789999998775 2 579999976 543221 111122234689999 7899988764
Q ss_pred ---CCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEe-cCC-eEEEccCCcccccccCccccCCCCCC
Q 000709 287 ---DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDS-HIWAIEHPTYSALTRPLCELSSLVPP 361 (1339)
Q Consensus 287 ---Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s-~Dg-~LWDi~t~~~~~~~~~l~~~~~~~~~ 361 (1339)
...|.+|.- +|-....|.. ........|..+.|++|+.+|+.. .|. .+|-..+- .|.++
T Consensus 277 ~~~~~~VvFfEr-NGLrhgeF~l--~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NY--------HWYLK----- 340 (928)
T PF04762_consen 277 LPDRHDVVFFER-NGLRHGEFTL--RFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNY--------HWYLK----- 340 (928)
T ss_pred cCCCcEEEEEec-CCcEeeeEec--CCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCC--------EEEEE-----
Confidence 455667764 3443333321 122345578899999999998764 333 38977643 22221
Q ss_pred eEEccCCcccEEEEEEecCCCcEEEEEECCCeEE-E--EecCCCCCCccccCCCCCCCCceEEEEec-CeEEEEEeeecc
Q 000709 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII-S--EFDPRSLPAVAPLPTPSGSRDHSAVYIVE-RELKLVNFQLSS 437 (1339)
Q Consensus 362 ~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il-r--iWd~~~~p~i~~~~~~~~s~~~s~~~~~~-~~l~l~~f~l~~ 437 (1339)
+.+.......+..+.|||.++..+...+.+|.+. . .|+....+. .+. .+...+.+.+ ..+++..|....
T Consensus 341 qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~------~~~-~D~g~vaVIDG~~lllTpf~~a~ 413 (928)
T PF04762_consen 341 QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG------SSP-NDNGTVAVIDGNKLLLTPFRRAV 413 (928)
T ss_pred EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC------CCc-cCceEEEEEeCCeEEEecccccC
Confidence 2233222224556999999999888888866542 1 233222111 111 1344455544 458888887655
Q ss_pred CCCCCCCCCcccccCCcccCCCchhhHHHhhcccccccCCCCCccEEEEcCCCCEEEEEECCCCEEEEEEe
Q 000709 438 AANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKV 508 (1339)
Q Consensus 438 ~~n~~lg~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGrylaV~~~~~g~~~Vy~i 508 (1339)
..+|.. ..++. ++ .+...++|++++..++++ ..+|.+.+|..
T Consensus 414 VPPPMs-------------------------~~~l~--~~-~~v~~vaf~~~~~~~avl-~~d~~l~~~~~ 455 (928)
T PF04762_consen 414 VPPPMS-------------------------SYELE--LP-SPVNDVAFSPSNSRFAVL-TSDGSLSIYEW 455 (928)
T ss_pred CCchHh-------------------------ceEEc--CC-CCcEEEEEeCCCCeEEEE-ECCCCEEEEEe
Confidence 544321 00011 11 123478888888766454 45667777773
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=7.7e-09 Score=117.19 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=141.7
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC--cEE-EEEecCCceeeccccc--------
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGRDIPKQE-------- 161 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d--g~I-~wD~~t~~~~~v~~~~-------- 161 (1339)
.+|.+.+|....+.......... . ....+..+.-++..+.++++|+.. ..+ +||+...+ .+...+
T Consensus 123 ~sG~l~~~~~k~~d~hss~l~~l-a-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~ 198 (412)
T KOG3881|consen 123 SSGNLQVRHDKSGDLHSSKLIKL-A-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLG 198 (412)
T ss_pred cCCcEEEEeccCCccccccceee-e-cCCceeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCCCCcccc
Confidence 58889999887543211000111 1 124566677778788788888887 444 77877652 221111
Q ss_pred -cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 162 -LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 162 -~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
.-.-+++.+.|.|. + ....|++++.-+.+|+||.+.+ +++..+. -...+++++. ..|++++|++|..-+.+
T Consensus 199 LrVPvW~tdi~Fl~g--~-~~~~fat~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~---l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 199 LRVPVWITDIRFLEG--S-PNYKFATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTG---LTPSGNFIYTGNTKGQL 271 (412)
T ss_pred ceeeeeeccceecCC--C-CCceEEEEecceeEEEecCcccCcceeEec-cccCcceeee---ecCCCcEEEEecccchh
Confidence 11346788999753 1 2678999999999999999865 5667775 5678899997 78999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRR 303 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1339)
..+|++.++... +.+.+..+.|.++..|| ..++++++|-|+.|||+|+.+.+.+..
T Consensus 272 ~~FD~r~~kl~g-----~~~kg~tGsirsih~hp---~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 272 AKFDLRGGKLLG-----CGLKGITGSIRSIHCHP---THPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred heecccCceeec-----cccCCccCCcceEEEcC---CCceEEeeccceeEEEeecccchhhhh
Confidence 999999987643 23788899999999999 789999999999999999998665544
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3.3e-08 Score=120.82 Aligned_cols=171 Identities=14% Similarity=0.042 Sum_probs=110.9
Q ss_pred eeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC-Cc--EEEEE
Q 000709 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GV--IRVLS 197 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-gt--IrIWD 197 (1339)
..+.|+|||+.++++.+.++ +.+||..+++...+ ..+...+....| +|||+.|+..+.+ +. |.++|
T Consensus 246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l---t~~~~~~~~~~w-----SPDG~~I~f~s~~~g~~~Iy~~d 317 (429)
T PRK03629 246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV---TDGRSNNTEPTW-----FPDSQNLAYTSDQAGRPQVYKVN 317 (429)
T ss_pred CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc---cCCCCCcCceEE-----CCCCCEEEEEeCCCCCceEEEEE
Confidence 45789999985655555444 33568887765443 223345677889 7899999887764 44 45556
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D---gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
+.+++.. .+. .+.....+.. ++|+|+.|+..+.+ ..|.+||+.++... . +.. ........|+|
T Consensus 318 ~~~g~~~-~lt-~~~~~~~~~~---~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~------Lt~-~~~~~~p~~Sp- 383 (429)
T PRK03629 318 INGGAPQ-RIT-WEGSQNQDAD---VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V------LTD-TFLDETPSIAP- 383 (429)
T ss_pred CCCCCeE-Eee-cCCCCccCEE---ECCCCCEEEEEEccCCCceEEEEECCCCCeE-E------eCC-CCCCCCceECC-
Confidence 6666543 333 3334455554 68999998876654 35888999877532 1 111 11234678999
Q ss_pred CCCCCEEEEEeCCCc---EEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 275 MGGSPQLITIGADKT---LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~---IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
|+.+|+.++.++. +.+|++. +...+. +.+|...+...+|+|-
T Consensus 384 --DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~------l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 --NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR------LPATDGQVKFPAWSPY 428 (429)
T ss_pred --CCCEEEEEEcCCCceEEEEEECC-CCCeEE------CccCCCCcCCcccCCC
Confidence 8999998887764 6777774 444444 4567777888888873
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.04 E-value=1.7e-08 Score=112.67 Aligned_cols=250 Identities=18% Similarity=0.277 Sum_probs=164.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE-CCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN-WEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWD-l~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
++.++||.+.|+....-|..+-+++.+.|.++|||- .+.++.-..+.........+.. .+.+.|..|-
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~--------- 87 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQ--------- 87 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEE---------
Confidence 678999999999999999999999999999999994 4455544444322223333333 4444444442
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~ 159 (1339)
..|++.-+.+...-......+... .|...+..+-|+...+ ++++++.|..+.| -.+.+.... .
T Consensus 88 ------------~ngtvtefs~sedfnkm~~~r~~~-~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg--~ 151 (404)
T KOG1409|consen 88 ------------DNGTVTEFALSEDFNKMTFLKDYL-AHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLG--G 151 (404)
T ss_pred ------------ecceEEEEEhhhhhhhcchhhhhh-hhhcceeeEEecCCce-eEEEeccccceEEEeeccCCccc--c
Confidence 344444443322100001112222 2367788888988776 8999999999988 444432110 0
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC--CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM--ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG 237 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl--~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg 237 (1339)
... .....++.| |-.+...|...|.|.+..+ ..-..+.++. +|.+.+.++.| .+...+|.+|..|.
T Consensus 152 Y~~-~~~~t~~~~-------d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~-~h~~~~~~l~W---d~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 152 YNF-ETPASALQF-------DALYAFVGDHSGQITMLKLEQNGCQLITTFN-GHTGEVTCLKW---DPGQRLLFSGASDH 219 (404)
T ss_pred eEe-eccCCCCce-------eeEEEEecccccceEEEEEeecCCceEEEEc-CcccceEEEEE---cCCCcEEEeccccC
Confidence 000 111112222 1114555656666665544 3446667776 99999999985 67788999999999
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
.|.+||+...+-. .+.+.+|.+.|..+.+-+ --+.+++++.||.|.+|+++..
T Consensus 220 ~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~---~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 220 SVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQ---HTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ceEEEeccCCcce-----eeeeccchhhhhhhhhhh---hheeeeeccCCCeEEEEeccce
Confidence 9999999866533 345789999999988877 5689999999999999999743
No 227
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.01 E-value=6.7e-10 Score=127.44 Aligned_cols=226 Identities=14% Similarity=0.099 Sum_probs=168.3
Q ss_pred eeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCe
Q 000709 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK 202 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~ 202 (1339)
-+.+.++.+|+++|+.|..+.+..+|+.+++..+ ...-...|.++.|+ .+.++++++ ....++|||-. |.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~v~Etv~Dv~~L-----Hneq~~AVA-QK~y~yvYD~~-Gt 201 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EINVMETVRDVTFL-----HNEQFFAVA-QKKYVYVYDNN-GT 201 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeee---eeehhhhhhhhhhh-----cchHHHHhh-hhceEEEecCC-Cc
Confidence 3568889999966666666666688999986543 12336688999995 456777776 77889999954 66
Q ss_pred EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE
Q 000709 203 LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1339)
Q Consensus 203 ~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La 282 (1339)
.+..+. ....|..+. |-|..-+|++++..|.++.-|+.+|+.+.. +..-.+.+..++-+| -.-.+-
T Consensus 202 ElHClk--~~~~v~rLe---FLPyHfLL~~~~~~G~L~Y~DVS~GklVa~------~~t~~G~~~vm~qNP---~NaVih 267 (545)
T KOG1272|consen 202 ELHCLK--RHIRVARLE---FLPYHFLLVAASEAGFLKYQDVSTGKLVAS------IRTGAGRTDVMKQNP---YNAVIH 267 (545)
T ss_pred EEeehh--hcCchhhhc---ccchhheeeecccCCceEEEeechhhhhHH------HHccCCccchhhcCC---ccceEE
Confidence 666664 346777786 677888999999999999999999997765 344566778888888 567888
Q ss_pred EEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccccCccccCCCC
Q 000709 283 TIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLV 359 (1339)
Q Consensus 283 Sgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~ 359 (1339)
+|...|+|.+|...+.+++.. +.+|.+.|.++++.++|.++ ++|.|.. |||+++-.
T Consensus 268 ~GhsnGtVSlWSP~skePLvK------iLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--------------- 326 (545)
T KOG1272|consen 268 LGHSNGTVSLWSPNSKEPLVK------ILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--------------- 326 (545)
T ss_pred EcCCCceEEecCCCCcchHHH------HHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------------
Confidence 999999999999988776654 68999999999999999966 6788885 99999631
Q ss_pred CCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEec
Q 000709 360 PPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFD 399 (1339)
Q Consensus 360 ~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd 399 (1339)
.+.++.. ......+++|. .+ +||+|..+-+ .+|.
T Consensus 327 ql~t~~t--p~~a~~ls~Sq-kg-lLA~~~G~~v--~iw~ 360 (545)
T KOG1272|consen 327 QLHTYRT--PHPASNLSLSQ-KG-LLALSYGDHV--QIWK 360 (545)
T ss_pred ccceeec--CCCcccccccc-cc-ceeeecCCee--eeeh
Confidence 1122221 12456677776 34 4777766655 6784
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.00 E-value=1.1e-08 Score=127.54 Aligned_cols=194 Identities=20% Similarity=0.216 Sum_probs=139.0
Q ss_pred eeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCe---EEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000709 123 FASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSL---VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V---~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~ 199 (1339)
+....+.-+.+.+.+.++.+....+|...+.. .....+.... .++-+ .++++.-++++|+--+.|.+|++.
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~---~~~i~~~er~~l~~~~~~---g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSV---LSKIQSDERCTLYSSLII---GDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCce---ehhcCCCceEEEEeEEEE---eccCcEEEEEeccccccEEEEecc
Confidence 33344444555355555666666777765532 1122222211 11111 126778899999999999999997
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
..+....+. ||.+.|..+. ++.+|+++++.|+|+++|+|++.+.+... .+.-+|...|+.+.|+| .
T Consensus 164 ~dn~p~~l~-GHeG~iF~i~---~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----~~~fgHsaRvw~~~~~~---n-- 229 (967)
T KOG0974|consen 164 EDNKPIRLK-GHEGSIFSIV---TSLDGRYIASVSDDRSIRLWPIDSREVLG-----CTGFGHSARVWACCFLP---N-- 229 (967)
T ss_pred ccCCcceec-ccCCceEEEE---EccCCcEEEEEecCcceeeeecccccccC-----cccccccceeEEEEecc---c--
Confidence 433333454 9999999997 78999999999999999999999987543 34678999999999998 3
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC-ceeEEEeCCCCCE-EEEecCCe--EEEccCC
Q 000709 280 QLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-ASWCHPRAPNLDI-LTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~-~V~svafspdg~i-Ls~s~Dg~--LWDi~t~ 343 (1339)
.++|++.|.+.++|+... ..+.. ..+|.. .++.++.+++..+ ++++.|+. +|++...
T Consensus 230 ~i~t~gedctcrvW~~~~-~~l~~------y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVNG-TQLEV------YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred eeEEeccceEEEEEeccc-ceehh------hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 999999999999997653 33333 467754 6899999988764 48899996 7887654
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=5.1e-08 Score=119.43 Aligned_cols=170 Identities=13% Similarity=0.029 Sum_probs=107.3
Q ss_pred eeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CCc--EEEEE
Q 000709 124 ASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGV--IRVLS 197 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-Dgt--IrIWD 197 (1339)
.++.|+|+|+.++++.+.++ +.+||..+++...+ ..+........| +|||++|+.+++ +|. |+++|
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~l---t~~~~~~~~~~~-----spDG~~l~f~sd~~g~~~iy~~d 322 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRL---TNHFGIDTEPTW-----APDGKSIYFTSDRGGRPQIYRVA 322 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEEC---ccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEE
Confidence 46789999986666665554 33668887765443 333344566788 789999888774 444 66777
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
+.+++..... .+........ ++|+|+.|+..+.++ .|.+||+.+++.. . +. +........|+|
T Consensus 323 l~~g~~~~lt--~~g~~~~~~~---~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~------Lt-~~~~~~~p~~sp- 388 (433)
T PRK04922 323 ASGGSAERLT--FQGNYNARAS---VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-T------LT-PGSLDESPSFAP- 388 (433)
T ss_pred CCCCCeEEee--cCCCCccCEE---ECCCCCEEEEEECCCCceeEEEEECCCCCeE-E------CC-CCCCCCCceECC-
Confidence 7766543332 2333444555 689999998765443 6999999877532 1 22 222345678999
Q ss_pred CCCCCEEEEEeCC---CcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 275 MGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 275 ~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
++++|+..+.+ +.|.+++...+ ..+. +..+...+...+|+|
T Consensus 389 --dG~~i~~~s~~~g~~~L~~~~~~g~-~~~~------l~~~~g~~~~p~wsp 432 (433)
T PRK04922 389 --NGSMVLYATREGGRGVLAAVSTDGR-VRQR------LVSADGEVREPAWSP 432 (433)
T ss_pred --CCCEEEEEEecCCceEEEEEECCCC-ceEE------cccCCCCCCCCccCC
Confidence 78887766653 45778887543 3333 234445566677776
No 230
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.8e-08 Score=114.26 Aligned_cols=211 Identities=15% Similarity=0.132 Sum_probs=147.7
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----EEEEEeccCccceEEec---cccceeEeeccccCCCccc
Q 000709 8 RPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ----VIYELKAGGVDQRRLVG---AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 8 ~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~----~l~~~~~~~~~~i~~vs---~d~~~Lasgs~d~~gk~~~ 80 (1339)
.+-+..|..++.. ..+|++|-.+|.+++|..+.+. .+..+..+ .+...+. ..-.+++.|+...
T Consensus 102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g--~g~~~~r~~~~~p~Iva~GGke~------ 171 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG--PGLYDVRQTDTDPYIVATGGKEN------ 171 (412)
T ss_pred ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC--CceeeeccCCCCCceEecCchhc------
Confidence 3344445555543 3478899999999999988443 23333333 1222222 2233444443210
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCcccccccc----ccccccCCCCeeeeeeCCC--CCeEEEEEecCcEEEE-EecCCc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEA----PTAVSNVTSGFASPPPSTK--GRHFLVICCVNKAIFL-DLVTMR 153 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~----~~~~~~~~~~V~slafspd--g~~lLasgs~dg~I~w-D~~t~~ 153 (1339)
-..+++||+...+.+.... ..+.-...-+++++.|-+. . ..|++++.-+.+++ |.+.++
T Consensus 172 -------------~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qR 237 (412)
T KOG3881|consen 172 -------------INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQR 237 (412)
T ss_pred -------------ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccC
Confidence 1568888888775543110 0111112346678888876 4 47899998888866 888654
Q ss_pred eeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000709 154 GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1339)
Q Consensus 154 ~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg 233 (1339)
+.+..+......++++.. .|++++|++|..-|.+..||+++++.......+-.+.|.++. .+|...++++|
T Consensus 238 -RPV~~fd~~E~~is~~~l-----~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih---~hp~~~~las~ 308 (412)
T KOG3881|consen 238 -RPVAQFDFLENPISSTGL-----TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIH---CHPTHPVLASC 308 (412)
T ss_pred -cceeEeccccCcceeeee-----cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEE---EcCCCceEEee
Confidence 466667777889999998 678999999999999999999999998885558999999996 79999999999
Q ss_pred eCCCcEEEEeCCCCCccc
Q 000709 234 GSDGLLILWSADHGQDSR 251 (1339)
Q Consensus 234 S~DgtVrVWDl~tg~~~~ 251 (1339)
+.|+.|||+|+.+.+.+.
T Consensus 309 GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred ccceeEEEeecccchhhh
Confidence 999999999999976554
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=3.3e-08 Score=110.87 Aligned_cols=195 Identities=14% Similarity=0.246 Sum_probs=133.7
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
...+..++|++.-- .++++..|-+|++ |-.+ ++..+ ........|+|++|-|. .+..|+.|+..| |.+|..
T Consensus 98 ~~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~-Lks~sQrnvtclawRPl----saselavgCr~g-IciW~~ 169 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK-LKSVSQRNVTCLAWRPL----SASELAVGCRAG-ICIWSD 169 (445)
T ss_pred hcceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce-ecchhhcceeEEEeccC----Ccceeeeeecce-eEEEEc
Confidence 34577889998553 6777888888866 4443 22111 12334678999999775 244678887766 889986
Q ss_pred CC----CeEE--------EEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceeccccccccccc
Q 000709 199 IS----WKLV--------RRYT-GGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDG 264 (1339)
Q Consensus 199 ~t----~~~i--------~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~tg~~~~~~~~~~~l~gH~~ 264 (1339)
.. .+.+ ..+. .|| .+|+++.| .+||..+++++. |..|.+||..++.++.- ..---+
T Consensus 170 s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw---n~dgt~l~tAS~gsssi~iWdpdtg~~~pL------~~~glg 239 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW---NEDGTILVTASFGSSSIMIWDPDTGQKIPL------IPKGLG 239 (445)
T ss_pred CcccccccccccccccchhheeCCCC-ceeeEEEE---cCCCCEEeecccCcceEEEEcCCCCCcccc------cccCCC
Confidence 42 1111 1111 244 78999984 788999998885 67899999999986542 112345
Q ss_pred ceEEEEeeccCCCCCEEEEEeCCCcEEEEEC-CCCeeEEEecCCCcccccCCceeEEEeCCCCCEE--EEecCCeEEEcc
Q 000709 265 GVVAVELSRVMGGSPQLITIGADKTLAIWDT-VSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSHIWAIE 341 (1339)
Q Consensus 265 ~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl-~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL--s~s~Dg~LWDi~ 341 (1339)
++.-+.|+| |+++|..+.-|+..++|.. +++.+.+- ....+.|...+|+|+|.+| +++...+||.+.
T Consensus 240 g~slLkwSP---dgd~lfaAt~davfrlw~e~q~wt~erw-------~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 240 GFSLLKWSP---DGDVLFAATCDAVFRLWQENQSWTKERW-------ILGSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred ceeeEEEcC---CCCEEEEecccceeeeehhcccceecce-------eccCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 688899999 8999999999999999954 33333222 2233478899999999944 677777787765
Q ss_pred C
Q 000709 342 H 342 (1339)
Q Consensus 342 t 342 (1339)
-
T Consensus 310 f 310 (445)
T KOG2139|consen 310 F 310 (445)
T ss_pred e
Confidence 3
No 232
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.96 E-value=3.6e-09 Score=136.28 Aligned_cols=224 Identities=17% Similarity=0.285 Sum_probs=157.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCc
Q 000709 7 FRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGS 86 (1339)
Q Consensus 7 L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~ 86 (1339)
++.|-..|.++.=||..++-+||+.||.|++|.+..++.+..+...
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~---------------------------------- 2249 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA---------------------------------- 2249 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc----------------------------------
Confidence 3456678999999999999999999999999998876665555422
Q ss_pred eEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCC
Q 000709 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNK 165 (1339)
Q Consensus 87 V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~ 165 (1339)
. ...|+.+.|+.+|. -+..+..||.+ .|.... +.....+.|+.
T Consensus 2250 -----------------g---------------~s~vtr~~f~~qGn-k~~i~d~dg~l~l~q~~p---k~~~s~qchnk 2293 (2439)
T KOG1064|consen 2250 -----------------G---------------NSRVTRSRFNHQGN-KFGIVDGDGDLSLWQASP---KPYTSWQCHNK 2293 (2439)
T ss_pred -----------------C---------------cchhhhhhhcccCC-ceeeeccCCceeecccCC---cceeccccCCc
Confidence 1 13356677888887 44444445555 664442 23445677888
Q ss_pred CeEEEEEeeccccCCCCEEEEEE---CCCcEEEEECCCC---eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMISW---KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs---~DgtIrIWDl~t~---~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
......|. +..+++.+ +++.+.+||..-. .++. ..|.+.+++++ +-|...+|+||+.+|.|
T Consensus 2294 ~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~H~~gaT~l~---~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2294 ALSDFRFI-------GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TCHDGGATVLA---YAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred cccceeee-------ehhhhccccCCCCCcccchhcccCcccceee---eecCCCceEEE---EcCcceEEEecCCcCcE
Confidence 88889884 46677654 6789999997522 2333 38999999997 78999999999999999
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce--
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS-- 317 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V-- 317 (1339)
++||++..+..+.| + . ++ ...++++|+..|.++||++.....++++.... .|.+-.
T Consensus 2361 ~l~D~rqrql~h~~------~-----~----~~----~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~---ak~gfFr~ 2418 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTF------Q-----A----LD----TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH---AKQGFFRN 2418 (2439)
T ss_pred EEeehHHHHHHHHh------h-----h----hh----hhheeeccCcccceEEEEccccchhhcCchhh---cccchhhh
Confidence 99999987765542 1 1 22 25799999999999999999887777753221 221110
Q ss_pred --eEEEeCCCCCEEEEecCC
Q 000709 318 --WCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 318 --~svafspdg~iLs~s~Dg 335 (1339)
..+-..+.+++.+|+.|+
T Consensus 2419 ~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2419 IGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred cCceeeeccCceEEEecCCC
Confidence 233344556677777765
No 233
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.96 E-value=1.3e-08 Score=118.20 Aligned_cols=197 Identities=14% Similarity=0.170 Sum_probs=139.6
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.||.+.+.+-... .......|...+.+-.|+|+|. -|++.+.||.|.++.++|..+.. .......|+|++|
T Consensus 83 ~DGkf~il~k~~r------VE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGMLRSt--l~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 83 NDGRFVILNKSAR------VERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGMLRST--VVQNEESIRCARW 153 (737)
T ss_pred CCceEEEecccch------hhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccchHHHH--HhhcCceeEEEEE
Confidence 4666665543221 1233444578899999999997 88899999999776677654432 3345679999999
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
.|+.+.++.+ ..+.+.|=-+.....+.+.. .|.+-|.|+.| ++..++++||+.|-..++||-....
T Consensus 154 -----~p~S~~vl~c-~g~h~~IKpL~~n~k~i~Wk-AHDGiiL~~~W---~~~s~lI~sgGED~kfKvWD~~G~~---- 219 (737)
T KOG1524|consen 154 -----APNSNSIVFC-QGGHISIKPLAANSKIIRWR-AHDGLVLSLSW---STQSNIIASGGEDFRFKIWDAQGAN---- 219 (737)
T ss_pred -----CCCCCceEEe-cCCeEEEeecccccceeEEe-ccCcEEEEeec---CccccceeecCCceeEEeecccCcc----
Confidence 6677777666 34556666666555556666 89999999985 7888999999999999999986443
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEe
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCV 332 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s 332 (1339)
.++-..|+.+|++++|+| + ..++.+| ..+.+ + -....+.|..++||+||..++|+
T Consensus 220 ---Lf~S~~~ey~ITSva~np---d-~~~~v~S---------~nt~R----~-----~~p~~GSifnlsWS~DGTQ~a~g 274 (737)
T KOG1524|consen 220 ---LFTSAAEEYAITSVAFNP---E-KDYLLWS---------YNTAR----F-----SSPRVGSIFNLSWSADGTQATCG 274 (737)
T ss_pred ---cccCChhccceeeeeecc---c-cceeeee---------eeeee----e-----cCCCccceEEEEEcCCCceeecc
Confidence 233467999999999999 5 4444444 22221 1 13345678899999999988765
Q ss_pred -cCCeE
Q 000709 333 -KDSHI 337 (1339)
Q Consensus 333 -~Dg~L 337 (1339)
..|.+
T Consensus 275 t~~G~v 280 (737)
T KOG1524|consen 275 TSTGQL 280 (737)
T ss_pred ccCceE
Confidence 55653
No 234
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.96 E-value=1.8e-07 Score=103.91 Aligned_cols=181 Identities=17% Similarity=0.288 Sum_probs=122.4
Q ss_pred CeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCcccccccc
Q 000709 33 DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEA 112 (1339)
Q Consensus 33 GtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~ 112 (1339)
+.|.|||=....++.++... ..|..+.-....++.. .++.|.+|...++-......
T Consensus 75 NkviIWDD~k~~~i~el~f~--~~I~~V~l~r~riVvv----------------------l~~~I~VytF~~n~k~l~~~ 130 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN--SEIKAVKLRRDRIVVV----------------------LENKIYVYTFPDNPKLLHVI 130 (346)
T ss_pred ceEEEEecccCcEEEEEEec--cceeeEEEcCCeEEEE----------------------ecCeEEEEEcCCChhheeee
Confidence 57999997777788888743 2334443222223222 47788888887542221111
Q ss_pred ccccccCCCCeeeeeeCCCCCeEEEE-EecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC
Q 000709 113 PTAVSNVTSGFASPPPSTKGRHFLVI-CCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD 190 (1339)
Q Consensus 113 ~~~~~~~~~~V~slafspdg~~lLas-gs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D 190 (1339)
.+... ...+.+++-+.+.. +|+. |-.-|.+.+ |+...+.........|...|.|++. +-+|..+||+|..
T Consensus 131 et~~N--PkGlC~~~~~~~k~-~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~L-----n~~Gt~vATaStk 202 (346)
T KOG2111|consen 131 ETRSN--PKGLCSLCPTSNKS-LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVAL-----NLQGTLVATASTK 202 (346)
T ss_pred ecccC--CCceEeecCCCCce-EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEE-----cCCccEEEEeccC
Confidence 11111 11233444333333 4433 445567755 7765543223456899999999999 7899999999999
Q ss_pred Cc-EEEEECCCCeEEEEEecCC-CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 191 GV-IRVLSMISWKLVRRYTGGH-KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 191 gt-IrIWDl~t~~~i~~l~~gH-~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
|+ |||||..++..+..+..|- ...|+|++ |+|++.+|+.+|+.|+|+++.++...
T Consensus 203 GTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia---FSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 203 GTLIRIFDTEDGTLLQELRRGVDRADIYCIA---FSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEEEEEEEcCCCcEeeeeecCCchheEEEEE---eCCCccEEEEEcCCCeEEEEEeecCC
Confidence 86 8999999999999987553 46799997 89999999999999999999987643
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=1.8e-07 Score=114.67 Aligned_cols=204 Identities=14% Similarity=0.059 Sum_probs=129.9
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaSgs~---DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+.+..|...|.+.+|+|||++|+..+. +..|.+||+.+++... +.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~------------------------------- 242 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG------------------------------- 242 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-------------------------------
Confidence 456677778888888888887776653 3567777776654321 11
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcE---EEEEecCCceeecc
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKA---IFLDLVTMRGRDIP 158 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~---I~wD~~t~~~~~v~ 158 (1339)
.....+.+..|+|||+.++++.+.++. .+||..++....+
T Consensus 243 ------------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L- 285 (435)
T PRK05137 243 ------------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL- 285 (435)
T ss_pred ------------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEc-
Confidence 001234567899999866666665543 3558877765443
Q ss_pred ccccCCCCeEEEEEeeccccCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-G--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1339)
Q Consensus 159 ~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-g--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~ 235 (1339)
..+........| +|||++|+..+.. | .|++||+.+++.. .+. .+.+.+.... ++|+|+.|+..+.
T Consensus 286 --t~~~~~~~~~~~-----spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt-~~~~~~~~~~---~SpdG~~ia~~~~ 353 (435)
T PRK05137 286 --TDSPAIDTSPSY-----SPDGSQIVFESDRSGSPQLYVMNADGSNPR-RIS-FGGGRYSTPV---WSPRGDLIAFTKQ 353 (435)
T ss_pred --cCCCCccCceeE-----cCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eee-cCCCcccCeE---ECCCCCEEEEEEc
Confidence 334445667888 7899999887743 3 6888898766543 333 2344555565 6899999987765
Q ss_pred C---CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC------CcEEEEECCCCee
Q 000709 236 D---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD------KTLAIWDTVSFKE 300 (1339)
Q Consensus 236 D---gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D------g~IrIWDl~t~~~ 300 (1339)
+ ..|.+||+.++. .+. +. +...+....|+| |+++|+..+.+ ..|.++|+..+..
T Consensus 354 ~~~~~~i~~~d~~~~~-~~~------lt-~~~~~~~p~~sp---DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 354 GGGQFSIGVMKPDGSG-ERI------LT-SGFLVEGPTWAP---NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCceEEEEEECCCCc-eEe------cc-CCCCCCCCeECC---CCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 4 368888876543 221 11 122466789999 78877765542 2577888865543
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=1.1e-07 Score=116.20 Aligned_cols=172 Identities=15% Similarity=0.040 Sum_probs=103.2
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE-EE--EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CCcEEEEEC
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSM 198 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I-~w--D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-DgtIrIWDl 198 (1339)
..+..|+|||+.++++.+.++.. +| |..++..+.+ ..+........| +|||++|+..++ +|...||.+
T Consensus 242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---t~~~~~~~~~~w-----SpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRL---TQSSGIDTEPFF-----SPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred ccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEEC---CCCCCCCcCeEE-----cCCCCEEEEEecCCCCcEEEEE
Confidence 34678999998666666666644 33 6655543332 334444566778 889999887664 456666654
Q ss_pred --CCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 199 --ISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 199 --~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
.++....... +........ ++|+|++|+..+.++ .|.+||+.+++... +.. ........|+|
T Consensus 314 ~~~~g~~~~lt~--~g~~~~~~~---~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-------lt~-~~~~~~p~~sp 380 (427)
T PRK02889 314 PASGGAAQRVTF--TGSYNTSPR---ISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-------LTD-TTRDESPSFAP 380 (427)
T ss_pred ECCCCceEEEec--CCCCcCceE---ECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-------ccC-CCCccCceECC
Confidence 4444322222 223333454 699999998877654 69999998876321 111 12345789999
Q ss_pred cCCCCCEEEEEeCCC---cEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 274 VMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
++++|+..+.++ .+.+.+. ++...+. +..+.+.+...+|+|-
T Consensus 381 ---dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~------l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 381 ---NGRYILYATQQGGRSVLAAVSS-DGRIKQR------LSVQGGDVREPSWGPF 425 (427)
T ss_pred ---CCCEEEEEEecCCCEEEEEEEC-CCCceEE------eecCCCCCCCCccCCC
Confidence 788887776543 3455555 3443333 2344555666777764
No 237
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.92 E-value=9e-08 Score=104.28 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=106.2
Q ss_pred eeeeeCCCCCeEEEEEecC------------cEEEEEecCCceeecccccc-CCCCeEEEEEeeccccCCCCEEEEE--E
Q 000709 124 ASPPPSTKGRHFLVICCVN------------KAIFLDLVTMRGRDIPKQEL-DNKSLVCMEFLSRSAVGDVPLVAFG--S 188 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~d------------g~I~wD~~t~~~~~v~~~~~-h~~~V~~vaf~P~s~Spdg~~LasG--s 188 (1339)
..+.|+++|+.+++....+ .+.+++..... +..... ..+.|.+++| +|+|+.+++. .
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~---~~~i~l~~~~~I~~~~W-----sP~g~~favi~g~ 80 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP---VESIELKKEGPIHDVAW-----SPNGNEFAVIYGS 80 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc---cceeeccCCCceEEEEE-----CcCCCEEEEEEcc
Confidence 3567899998666655411 11122333322 222222 3456999999 7888886554 4
Q ss_pred CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccc
Q 000709 189 SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGG 265 (1339)
Q Consensus 189 ~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D---gtVrVWDl~tg~~~~~~~~~~~l~gH~~~ 265 (1339)
.++.|.+||++ ++.+..+ +...++.+. ++|+|++|+.|+.+ |.|.+||+++.+.+.. ..|. .
T Consensus 81 ~~~~v~lyd~~-~~~i~~~---~~~~~n~i~---wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~-------~~~~-~ 145 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSF---GTQPRNTIS---WSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIST-------FEHS-D 145 (194)
T ss_pred CCcccEEEcCc-ccEeEee---cCCCceEEE---ECCCCCEEEEEEccCCCcEEEEEECCCCEEeec-------cccC-c
Confidence 67799999997 5666665 346677886 69999999998754 6699999997765543 2233 4
Q ss_pred eEEEEeeccCCCCCEEEEEeC------CCcEEEEECCCCeeEEE
Q 000709 266 VVAVELSRVMGGSPQLITIGA------DKTLAIWDTVSFKELRR 303 (1339)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~------Dg~IrIWDl~t~~~l~~ 303 (1339)
+..++|+| +|++|++++. |+.++||++. |+.+..
T Consensus 146 ~t~~~WsP---dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 146 ATDVEWSP---DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEEEEEcC---CCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 78999999 8999998874 7899999986 666554
No 238
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=1.7e-07 Score=114.55 Aligned_cols=204 Identities=13% Similarity=0.088 Sum_probs=126.4
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEec--CcEE-EEEecCCceeeccccccCCCCeEEEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV--NKAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~--dg~I-~wD~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
..|.+||....... .... ....+.+.+|+|||+.++.+... +..+ ++|+.+++.+.+..... .+....
T Consensus 179 ~~l~~~d~dg~~~~-----~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~ 249 (429)
T PRK03629 179 YELRVSDYDGYNQF-----VVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPA 249 (429)
T ss_pred eeEEEEcCCCCCCE-----Eeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeE
Confidence 46888888765432 1122 24568899999999844443322 2233 55888776555433332 344678
Q ss_pred EeeccccCCCCEEEEE-ECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-CcEEEE--eCC
Q 000709 172 FLSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GLLILW--SAD 245 (1339)
Q Consensus 172 f~P~s~Spdg~~LasG-s~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-gtVrVW--Dl~ 245 (1339)
| +|||+.|+.. +.+| .|++||+.+++..+. . .+...+.... ++|+|+.|+..+.+ +...+| |+.
T Consensus 250 ~-----SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t-~~~~~~~~~~---wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 250 F-----SPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-T-DGRSNNTEPT---WFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred E-----CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-c-CCCCCcCceE---ECCCCCEEEEEeCCCCCceEEEEECC
Confidence 8 8899988865 3444 588999988766443 3 3344556665 69999988877654 444555 665
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC---CcEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
++... . +..+........|+| ++++|+..+.+ ..|.+||+.+++.. .+. ..+ ......|
T Consensus 320 ~g~~~-~------lt~~~~~~~~~~~Sp---DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt-----~~~--~~~~p~~ 381 (429)
T PRK03629 320 GGAPQ-R------ITWEGSQNQDADVSS---DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT-----DTF--LDETPSI 381 (429)
T ss_pred CCCeE-E------eecCCCCccCEEECC---CCCEEEEEEccCCCceEEEEECCCCCeE-EeC-----CCC--CCCCceE
Confidence 55421 1 222333456788999 78888776543 35888999887643 321 111 2235789
Q ss_pred CCCCCEE-EEecCC
Q 000709 323 APNLDIL-TCVKDS 335 (1339)
Q Consensus 323 spdg~iL-s~s~Dg 335 (1339)
+|||+.| ..+.++
T Consensus 382 SpDG~~i~~~s~~~ 395 (429)
T PRK03629 382 APNGTMVIYSSSQG 395 (429)
T ss_pred CCCCCEEEEEEcCC
Confidence 9999965 455554
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=5.9e-06 Score=99.15 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=77.1
Q ss_pred cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee---------EEEecCCCcccccCCceeEEEeCCCCCEEEEe-c
Q 000709 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE---------LRRIKPVPKLACHSVASWCHPRAPNLDILTCV-K 333 (1339)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~---------l~~~~~~~~l~~H~~~V~svafspdg~iLs~s-~ 333 (1339)
....++.|+. ...+|++||.||.+++..+.+... ...+..-.++.||...|.-+.|+.+.+-|+.| .
T Consensus 15 vkL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 15 VKLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred ceEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 4578999998 778999999999999998865321 11222234689999999999999998877665 5
Q ss_pred CCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 334 DSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 334 Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+|- ||-+-.+... ...+...++.-|.+|+|..+ +..++....||.|+
T Consensus 92 ~GlIiVWmlykgsW~--------------EEMiNnRnKSvV~SmsWn~d-G~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWC--------------EEMINNRNKSVVVSMSWNLD-GTKICIVYEDGAVI 140 (1189)
T ss_pred CceEEEEeeecccHH--------------HHHhhCcCccEEEEEEEcCC-CcEEEEEEccCCEE
Confidence 564 7988765321 00111222336788888874 54466555555543
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.84 E-value=6.8e-07 Score=106.84 Aligned_cols=323 Identities=13% Similarity=0.075 Sum_probs=178.3
Q ss_pred CEE-EEEeCCCeEEEEECCCCcEEEEEeccCcc-ceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000709 24 PWL-VTADASDHVSVWNWEHRQVIYELKAGGVD-QRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1339)
Q Consensus 24 ~~L-aSgs~DGtIrIWDl~tg~~l~~~~~~~~~-~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWD 101 (1339)
+++ ++-..+|.|.|.|..+.+.+.++..++.. .....++|++++...+ .|+.|.++|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~---------------------rdg~vsviD 64 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVAN---------------------RDGTVSVID 64 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEE---------------------TTSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEc---------------------CCCeEEEEE
Confidence 444 45567899999999999999999865432 2334568898887764 478999999
Q ss_pred cCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceee-cccccc----CCCCeEEEEEeec
Q 000709 102 LWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRD-IPKQEL----DNKSLVCMEFLSR 175 (1339)
Q Consensus 102 l~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~-v~~~~~----h~~~V~~vaf~P~ 175 (1339)
+.+.+.+.. ... .....++++++||+.+++++...+.+ ++|..+.+... ++.... ....+..+..
T Consensus 65 ~~~~~~v~~---i~~---G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~--- 135 (369)
T PF02239_consen 65 LATGKVVAT---IKV---GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA--- 135 (369)
T ss_dssp TTSSSEEEE---EE----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE---
T ss_pred CCcccEEEE---Eec---CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe---
Confidence 999986531 111 23467899999999666666677777 55988876432 111111 2346667776
Q ss_pred cccCCCCEEEE-EECCCcEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEE-eCCCcEEEEeCCCCCccc
Q 000709 176 SAVGDVPLVAF-GSSDGVIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSG-GSDGLLILWSADHGQDSR 251 (1339)
Q Consensus 176 s~Spdg~~Las-Gs~DgtIrIWDl~t~~~i--~~l~~gH~~~V~sl~wf~~spdg~~LaSg-S~DgtVrVWDl~tg~~~~ 251 (1339)
++....++. --+.+.|.+.|....+.+ ..+ .......... +++++++++.+ ..++.|-++|..+++.+.
T Consensus 136 --s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i--~~g~~~~D~~---~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 136 --SPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTI--KVGRFPHDGG---FDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp ---SSSSEEEEEETTTTEEEEEETTTSSCEEEEEE--E--TTEEEEE---E-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred --cCCCCEEEEEEccCCeEEEEEeccccccceeee--cccccccccc---cCcccceeeecccccceeEEEeeccceEEE
Confidence 566774544 445588888887765433 233 2334455553 78999887664 567799999998876544
Q ss_pred eecccccccccccceEEE-------EeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 252 ELVPKLSLKAHDGGVVAV-------ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 252 ~~~~~~~l~gH~~~V~sv-------afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
.+.. --..|...+..+ .|...+ .+...++.-....+.+||..+++.++++ ...... ..+..||
T Consensus 209 ~i~~--g~~p~~~~~~~~php~~g~vw~~~~-~~~~~~~~ig~~~v~v~d~~~wkvv~~I------~~~G~g-lFi~thP 278 (369)
T PF02239_consen 209 LIDT--GKKPHPGPGANFPHPGFGPVWATSG-LGYFAIPLIGTDPVSVHDDYAWKVVKTI------PTQGGG-LFIKTHP 278 (369)
T ss_dssp EEE---SSSBEETTEEEEEETTTEEEEEEEB-SSSSEEEEEE--TTT-STTTBTSEEEEE------E-SSSS---EE--T
T ss_pred Eeec--cccccccccccccCCCcceEEeecc-ccceecccccCCccccchhhcCeEEEEE------ECCCCc-ceeecCC
Confidence 3210 012233333322 122110 1223323333345667999999988885 333344 4678899
Q ss_pred CCCEEEEe----cC-Ce--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCC-eEEE
Q 000709 325 NLDILTCV----KD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG-VIIS 396 (1339)
Q Consensus 325 dg~iLs~s----~D-g~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG-~Ilr 396 (1339)
+++.+-.. .+ .. |+|..+... ...+......++..+.|++++..+.++..+.+ .| .
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~---------------~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i-~ 342 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKV---------------VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI-V 342 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEE---------------EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE-E
T ss_pred CCccEEeeccCCCCCceEEEEECcCcce---------------eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE-E
Confidence 99977333 33 22 677775411 11222222225889999997666555555444 66 6
Q ss_pred EecCCCCCCcccc
Q 000709 397 EFDPRSLPAVAPL 409 (1339)
Q Consensus 397 iWd~~~~p~i~~~ 409 (1339)
++|..+......+
T Consensus 343 v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 343 VYDAKTLKEKKRI 355 (369)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCcEEEEEE
Confidence 9998876555444
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.82 E-value=3.5e-07 Score=112.10 Aligned_cols=197 Identities=17% Similarity=0.102 Sum_probs=123.8
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC---c-EEEEEecCCceeeccccccCCCCeEEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN---K-AIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d---g-~I~wD~~t~~~~~v~~~~~h~~~V~~v 170 (1339)
..|.+||....... ....+ ...+.+..|+|||+ .|+..+.. . +.+||+.+++...+.. ......+.
T Consensus 184 ~~l~i~D~~g~~~~-----~lt~~-~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~l~~---~~g~~~~~ 253 (433)
T PRK04922 184 YALQVADSDGYNPQ-----TILRS-AEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQRELVAS---FRGINGAP 253 (433)
T ss_pred EEEEEECCCCCCce-----EeecC-CCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEEecc---CCCCccCc
Confidence 46888988654321 12222 45688999999998 55544422 2 3366988776544322 23344577
Q ss_pred EEeeccccCCCCEEEE-EECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCc--EEEEeC
Q 000709 171 EFLSRSAVGDVPLVAF-GSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGL--LILWSA 244 (1339)
Q Consensus 171 af~P~s~Spdg~~Las-Gs~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dgt--VrVWDl 244 (1339)
.| +|||+.|+. .+.+| .|++||+.+++.. .+. .|.......+ ++++|+.|+.++. +|. |.++|+
T Consensus 254 ~~-----SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~---~spDG~~l~f~sd~~g~~~iy~~dl 323 (433)
T PRK04922 254 SF-----SPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT-NHFGIDTEPT---WAPDGKSIYFTSDRGGRPQIYRVAA 323 (433)
T ss_pred eE-----CCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEEC
Confidence 88 789987764 45555 5999999887754 343 4544455565 6899998887764 444 666676
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC---cEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
.+++..+ +..+.......+|+| ++++|+..+.++ .|.+||+.+++.. .+ . +........
T Consensus 324 ~~g~~~~-------lt~~g~~~~~~~~Sp---DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L------t-~~~~~~~p~ 385 (433)
T PRK04922 324 SGGSAER-------LTFQGNYNARASVSP---DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL------T-PGSLDESPS 385 (433)
T ss_pred CCCCeEE-------eecCCCCccCEEECC---CCCEEEEEECCCCceeEEEEECCCCCeE-EC------C-CCCCCCCce
Confidence 6654321 111223345689999 788887765433 6999999887643 32 1 222334678
Q ss_pred eCCCCCEE
Q 000709 322 RAPNLDIL 329 (1339)
Q Consensus 322 fspdg~iL 329 (1339)
|+|||+.+
T Consensus 386 ~spdG~~i 393 (433)
T PRK04922 386 FAPNGSMV 393 (433)
T ss_pred ECCCCCEE
Confidence 99999965
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-07 Score=105.78 Aligned_cols=268 Identities=15% Similarity=0.165 Sum_probs=152.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----EEEEEeccCccceEEeccccceeEeeccccCCCcccccc-C
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-----VIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR-G 84 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~-----~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~-~ 84 (1339)
.+-|.+|.|.-+|.+||||+.+|.|.++.-+... ...+++.|. +.-.+|-+...+....-++-+. +
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe--------pEFDYLkSleieEKinkIrw~~~~ 96 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE--------PEFDYLKSLEIEEKINKIRWLDDG 96 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccC--------cccchhhhhhhhhhhhhceecCCC
Confidence 3568899999999999999999999999754221 122232221 2222232222111100000000 0
Q ss_pred -CceEEEEEcCCeEEEEEcCCcccccc-------------------------------ccccccccCCCCeeeeeeCCCC
Q 000709 85 -GSVKQVNFYDDDVRFWQLWRNRAAAA-------------------------------EAPTAVSNVTSGFASPPPSTKG 132 (1339)
Q Consensus 85 -g~V~sVaF~Dg~IrlWDl~~~~~l~~-------------------------------~~~~~~~~~~~~V~slafspdg 132 (1339)
....-+.-.|.+|++|.+........ ..+.....|+--|.++.++.|+
T Consensus 97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 11111111688999998765432210 0111122345568899999999
Q ss_pred CeEEEEEecCcEEEEEecCCc-eeeccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE--
Q 000709 133 RHFLVICCVNKAIFLDLVTMR-GRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-- 204 (1339)
Q Consensus 133 ~~lLasgs~dg~I~wD~~t~~-~~~v~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i-- 204 (1339)
+ .++++.+=++-.|++.-.. .-.+.-.+.+ ..-|++..|||. ..+.++..++.|+|++-|++...+.
T Consensus 177 E-t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~----~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 177 E-TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH----HCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred c-eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh----HccEEEEecCCCcEEEeechhhhhhcc
Confidence 8 6666555555577543211 1111111222 456889999873 4678888899999999999843111
Q ss_pred --EEEe-----------cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-ccceeccc-------ccccccc
Q 000709 205 --RRYT-----------GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ-DSRELVPK-------LSLKAHD 263 (1339)
Q Consensus 205 --~~l~-----------~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~-~~~~~~~~-------~~l~gH~ 263 (1339)
+.+. .+--..|..+. |+++|+++++-. --+|++||+.... .+..+... +.+. ..
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvK---Fs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY-En 326 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVK---FSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY-EN 326 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceE---EccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh-hc
Confidence 1111 01123456665 899999999743 2689999996432 22221000 0011 11
Q ss_pred cce---EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 264 GGV---VAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 264 ~~V---~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
+.| ..++|+- ++.+++|||....+++++...|.
T Consensus 327 D~IfdKFec~~sg---~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 327 DAIFDKFECSWSG---NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cchhheeEEEEcC---CcceEecccccceEEEecCCCCc
Confidence 222 3577876 77899999999999999976654
No 243
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.80 E-value=2.9e-07 Score=101.26 Aligned_cols=270 Identities=17% Similarity=0.144 Sum_probs=161.9
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCC---CCCeEEEEEecCcEEEE---Ee--cCCceeeccccccCCC
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST---KGRHFLVICCVNKAIFL---DL--VTMRGRDIPKQELDNK 165 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafsp---dg~~lLasgs~dg~I~w---D~--~t~~~~~v~~~~~h~~ 165 (1339)
-|.+.++++...+... .........+.+..+.|+- +|...++-.-..|.+.+ +. .....+.+........
T Consensus 45 ~Gkl~Lys~~d~~~~~--l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~ 122 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV 122 (339)
T ss_pred ccceEEEeecccccCc--cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence 4667777777765543 1122222234455555542 33323444444454433 11 1111111111111122
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEE--EEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~--~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
.-.++.| ++.+..++++-.+|.+.+-+.......+ ..+ +|.-..+... +...+.+++.+|++|+.+..||
T Consensus 123 ~~lslD~-----~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk-~He~E~Wta~--f~~~~pnlvytGgDD~~l~~~D 194 (339)
T KOG0280|consen 123 EALSLDI-----STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK-VHEFEAWTAK--FSDKEPNLVYTGGDDGSLSCWD 194 (339)
T ss_pred eeeEEEe-----eccCceEEEEcCCCcEEEEecceeeeeeccccc-ccceeeeeee--cccCCCceEEecCCCceEEEEE
Confidence 3457788 6677889999999999976665544333 555 8988888776 2455668999999999999999
Q ss_pred CCC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC-CCeeEEEecCCCcccccCCceeEEE
Q 000709 244 ADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 244 l~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~-t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
++. ++.+.. ..+-|..+|.++.-+| ..+.+|++|+.|-.|++||.+ -++++.. ....+.||.+.
T Consensus 195 ~R~p~~~i~~-----n~kvH~~GV~SI~ss~--~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~ 260 (339)
T KOG0280|consen 195 IRIPKTFIWH-----NSKVHTSGVVSIYSSP--PKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIK 260 (339)
T ss_pred ecCCcceeee-----cceeeecceEEEecCC--CCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEE
Confidence 993 332221 1356899999999998 478899999999999999998 4555443 23347899999
Q ss_pred eCCCCC--EE-EEecCC-eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEE-CCCeEEE
Q 000709 322 RAPNLD--IL-TCVKDS-HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGT-NVGVIIS 396 (1339)
Q Consensus 322 fspdg~--iL-s~s~Dg-~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs-~DG~Ilr 396 (1339)
++|.-. ++ +|-..| .|-+++..... + .......+.|.. ..+.-.|.. ...++|+++ .|..++.
T Consensus 261 ~~p~~~~~lL~~CMh~G~ki~~~~~~~~e-----~-----~~~~~s~~~hdS-l~YG~DWd~-~~~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 261 HHPEIFHRLLAACMHNGAKILDSSDKVLE-----F-----QIVLPSDKIHDS-LCYGGDWDS-KDSFLATCSFYDKKIRQ 328 (339)
T ss_pred ecchhhhHHHHHHHhcCceEEEecccccc-----h-----heeeeccccccc-eeecccccc-ccceeeeeeccccceee
Confidence 999744 44 444555 36666643110 0 001123344444 567777755 344577754 4555434
Q ss_pred Eec
Q 000709 397 EFD 399 (1339)
Q Consensus 397 iWd 399 (1339)
+|-
T Consensus 329 ~Wl 331 (339)
T KOG0280|consen 329 LWL 331 (339)
T ss_pred eee
Confidence 663
No 244
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=4.3e-07 Score=107.10 Aligned_cols=251 Identities=14% Similarity=0.098 Sum_probs=161.6
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEE-EEecCCceeeccccccC-CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIF-LDLVTMRGRDIPKQELD-NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~-wD~~t~~~~~v~~~~~h-~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
....+.|..+|||+.++++|...-.|. +|+.....+ +.-| ...+..+..+ +.|-..++.-..|.+|.+..
T Consensus 51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK----FERhlDae~V~feiL----sDD~SK~v~L~~DR~IefHa 122 (703)
T KOG2321|consen 51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK----FERHLDAEVVDFEIL----SDDYSKSVFLQNDRTIEFHA 122 (703)
T ss_pred ccccceeEecCCCcEEEEecccCCceEEEEcccceee----eeecccccceeEEEe----ccchhhheEeecCceeeehh
Confidence 455678889999998889988887774 488765432 2333 3344333332 45555566666788887654
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCC
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGG 277 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~d 277 (1339)
.. |.....-. . ..-..++ ...+...++ .++....|.-+++..|..+.. +....++++++..++ .
T Consensus 123 k~-G~hy~~RI-P--~~GRDm~--y~~~scDly-~~gsg~evYRlNLEqGrfL~P------~~~~~~~lN~v~in~---~ 186 (703)
T KOG2321|consen 123 KY-GRHYRTRI-P--KFGRDMK--YHKPSCDLY-LVGSGSEVYRLNLEQGRFLNP------FETDSGELNVVSINE---E 186 (703)
T ss_pred hc-Ceeeeeec-C--cCCcccc--ccCCCccEE-EeecCcceEEEEccccccccc------cccccccceeeeecC---c
Confidence 32 22211111 1 1222332 123333444 444556788889999886543 344557899999998 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCC-----ceeEEEeCCCCCEE-EEecCCe--EEEccCCcccccc
Q 000709 278 SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSV-----ASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALT 349 (1339)
Q Consensus 278 g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~-----~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~~~~ 349 (1339)
..+|++|+.||.|..||.++...+.++........|.. .|+++.|+.+|-.+ .|..+|. |||++...
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~----- 261 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK----- 261 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC-----
Confidence 67999999999999999998887777765555445554 39999999988766 5667786 79998652
Q ss_pred cCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCccccC
Q 000709 350 RPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLP 410 (1339)
Q Consensus 350 ~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i~~~~ 410 (1339)
++..-......+|..+.|.+.++. =...+.|..++++||.....+...+.
T Consensus 262 ----------pl~~kdh~~e~pi~~l~~~~~~~q-~~v~S~Dk~~~kiWd~~~Gk~~asiE 311 (703)
T KOG2321|consen 262 ----------PLLVKDHGYELPIKKLDWQDTDQQ-NKVVSMDKRILKIWDECTGKPMASIE 311 (703)
T ss_pred ----------ceeecccCCccceeeecccccCCC-ceEEecchHHhhhcccccCCceeecc
Confidence 222222333457888999875332 23334455667999988776666554
No 245
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.75 E-value=0.00022 Score=83.06 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=122.9
Q ss_pred CCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-cEEEEECCCCeEEEEEec
Q 000709 131 KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRRYTG 209 (1339)
Q Consensus 131 dg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg-tIrIWDl~t~~~i~~l~~ 209 (1339)
+|. +++..|.++..+.+...+-. ....+...|+-..+ ..+++-++.|..|| .+-|||..+++. +.+.
T Consensus 331 ~Gd-~ia~VSRGkaFi~~~~~~~~----iqv~~~~~VrY~r~-----~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e- 398 (668)
T COG4946 331 NGD-YIALVSRGKAFIMRPWDGYS----IQVGKKGGVRYRRI-----QVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIE- 398 (668)
T ss_pred CCc-EEEEEecCcEEEECCCCCee----EEcCCCCceEEEEE-----ccCCcceEEeccCCceEEEEecCCceE-EEee-
Confidence 354 77777777776665444422 23456667888888 56777889999998 899999998765 4444
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC--
Q 000709 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD-- 287 (1339)
Q Consensus 210 gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D-- 287 (1339)
..-+.|.++. .+++|+.++.+.....+-+.|+.+|..... -+...+-|+...||| ++++|+-+--+
T Consensus 399 ~~lg~I~av~---vs~dGK~~vvaNdr~el~vididngnv~~i------dkS~~~lItdf~~~~---nsr~iAYafP~gy 466 (668)
T COG4946 399 KDLGNIEAVK---VSPDGKKVVVANDRFELWVIDIDNGNVRLI------DKSEYGLITDFDWHP---NSRWIAYAFPEGY 466 (668)
T ss_pred CCccceEEEE---EcCCCcEEEEEcCceEEEEEEecCCCeeEe------cccccceeEEEEEcC---CceeEEEecCcce
Confidence 5678899997 899999999999999999999999874211 133456799999999 78999876655
Q ss_pred --CcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 288 --KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 288 --g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
..|+++|+..++.... ......=.+-+|.||++.|
T Consensus 467 ~tq~Iklydm~~~Kiy~v-------TT~ta~DfsPaFD~d~ryL 503 (668)
T COG4946 467 YTQSIKLYDMDGGKIYDV-------TTPTAYDFSPAFDPDGRYL 503 (668)
T ss_pred eeeeEEEEecCCCeEEEe-------cCCcccccCcccCCCCcEE
Confidence 4799999998886554 2222223467889999854
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.74 E-value=4.1e-08 Score=113.86 Aligned_cols=287 Identities=16% Similarity=0.210 Sum_probs=174.7
Q ss_pred eeeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEeccCccceEEec--cccceeEeecc
Q 000709 2 LRLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEH-------RQVIYELKAGGVDQRRLVG--AKLEKLAEGEL 72 (1339)
Q Consensus 2 L~l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~t-------g~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~ 72 (1339)
+|+..|.||+..|..++--.+.+-+++++.|.+|++|.++. ..|..+++. |...+..+. .+.+.+++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-Hkk~i~~igfL~~lr~i~S--- 801 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-HKKPIHDIGFLADLRSIAS--- 801 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-ccCcccceeeeeccceeee---
Confidence 57899999999999999888888899999999999999863 224455543 233333332 34444444
Q ss_pred ccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecC
Q 000709 73 EHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVT 151 (1339)
Q Consensus 73 d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t 151 (1339)
.|+.|++||...++.+..............|.|+. +-+...+++.|+...++.+ |.+.
T Consensus 802 --------------------cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 802 --------------------CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred --------------------ccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccc
Confidence 48999999998887664111111111122343332 2234434444467777755 8776
Q ss_pred Cceee---ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000709 152 MRGRD---IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA 228 (1339)
Q Consensus 152 ~~~~~---v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~ 228 (1339)
....+ +....+.+..++|++. .+.|++++.+-.+|.|.+.|.++|+.+..+. .-.-....++ .|..+
T Consensus 861 ce~~~E~kVcna~~Pna~~R~iaV-----a~~GN~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla----apsdq 930 (1034)
T KOG4190|consen 861 CEWTCELKVCNAPGPNALTRAIAV-----ADKGNKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA----APSDQ 930 (1034)
T ss_pred ccceeeEEeccCCCCchheeEEEe-----ccCcchhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc----CchhH
Confidence 65432 2122344678999999 6789999999999999999999999888775 3333344443 56677
Q ss_pred EEEEEeCCCcEEE-EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCC
Q 000709 229 LLVSGGSDGLLIL-WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1339)
Q Consensus 229 ~LaSgS~DgtVrV-WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~ 307 (1339)
.++....|.++.| |....+....+..+.-. ..| |-. .-|.-|+++.....+.+|.-.. .++.+..+
T Consensus 931 ~L~~saldHslaVnWhaldgimh~q~kpppe-pah--------flq--svgpSLV~a~~Gn~lgVYad~a--~~ha~sti 997 (1034)
T KOG4190|consen 931 ALAQSALDHSLAVNWHALDGIMHLQDKPPPE-PAH--------FLQ--SVGPSLVTAQNGNILGVYADSA--ELHAESTI 997 (1034)
T ss_pred HHHhhcccceeEeeehhcCCeeeeccCCCCc-chh--------hhh--ccCceeEEeccCcEEEEEecch--hhhhhhhh
Confidence 8888889999999 97766643222111100 111 111 1355777777777788885321 11111111
Q ss_pred Ccc--cccCCceeEEEeCCCCC-EEEEecCCe
Q 000709 308 PKL--ACHSVASWCHPRAPNLD-ILTCVKDSH 336 (1339)
Q Consensus 308 ~~l--~~H~~~V~svafspdg~-iLs~s~Dg~ 336 (1339)
.++ ....+..++++.-|-+. +++|++.|.
T Consensus 998 tKiR~d~f~G~lTala~LPLN~afLaGne~G~ 1029 (1034)
T KOG4190|consen 998 TKIRPDEFPGTLTALAPLPLNCAFLAGNEHGA 1029 (1034)
T ss_pred ccccccccCCccceeeeccccchhhccCCCCc
Confidence 111 22234455666666544 666766654
No 247
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.73 E-value=1.9e-06 Score=104.87 Aligned_cols=150 Identities=16% Similarity=0.097 Sum_probs=95.2
Q ss_pred eeeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC-C--cEEEE
Q 000709 123 FASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-G--VIRVL 196 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-g--tIrIW 196 (1339)
+.+++|+|+++.++++.+.++ +..||..++....+ ..+........| +++|++|+..+.. + .|.+|
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l---~~~~~~~~~~~~-----s~dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL---TNGPGIDTEPSW-----SPDGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC---CCCCCCCCCEEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 456789999986666655443 33568877654443 223334456678 7899988877653 3 58888
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC---cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG---LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg---tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
|+.+++.. .+. .+...+.... +++++++|+.++.++ .|.+||+.++... . +..+ .......|+|
T Consensus 308 d~~~~~~~-~l~-~~~~~~~~~~---~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~------l~~~-~~~~~p~~sp 374 (417)
T TIGR02800 308 DADGGEVR-RLT-FRGGYNASPS---WSPDGDLIAFVHREGGGFNIAVMDLDGGGER-V------LTDT-GLDESPSFAP 374 (417)
T ss_pred ECCCCCEE-Eee-cCCCCccCeE---ECCCCCEEEEEEccCCceEEEEEeCCCCCeE-E------ccCC-CCCCCceECC
Confidence 88876643 333 3445566665 689999999888876 7889998875421 1 1111 1234568999
Q ss_pred cCCCCCEEEEEeCCC---cEEEEECC
Q 000709 274 VMGGSPQLITIGADK---TLAIWDTV 296 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg---~IrIWDl~ 296 (1339)
++.+|+..+.++ .+.+.+..
T Consensus 375 ---dg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 375 ---NGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred ---CCCEEEEEEeCCCcEEEEEEECC
Confidence 777777766543 35555543
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.73 E-value=1.1e-07 Score=106.01 Aligned_cols=269 Identities=11% Similarity=0.086 Sum_probs=160.8
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE--EecCCc--eeeccccccC------------CCCeEEEEEeeccccCCCCE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMR--GRDIPKQELD------------NKSLVCMEFLSRSAVGDVPL 183 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w--D~~t~~--~~~v~~~~~h------------~~~V~~vaf~P~s~Spdg~~ 183 (1339)
...+.++.|...|. +|++|..+|.+++ +-.+.+ ......+..| ...|..+.|++. .+...
T Consensus 25 adiis~vef~~~Ge-~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~---~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE-RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD---GNLAE 100 (433)
T ss_pred hcceeeEEeecccc-eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCC---CCccE
Confidence 34578899999998 9999999999966 322221 1111122222 346888999752 34566
Q ss_pred EEEEECCCcEEEEECCCC-----------------------------------eEEEEEecCCCCCeeEEEEeeeCCCCC
Q 000709 184 VAFGSSDGVIRVLSMISW-----------------------------------KLVRRYTGGHKGSISCLMTFMASSGEA 228 (1339)
Q Consensus 184 LasGs~DgtIrIWDl~t~-----------------------------------~~i~~l~~gH~~~V~sl~wf~~spdg~ 228 (1339)
++..+.|.+|++|.+... .+.+.+..+|.-.|+++. ++.|+.
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS---~NsD~E 177 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS---VNSDKE 177 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee---ecCccc
Confidence 777779999999987521 122333457888899997 788888
Q ss_pred EEEEEeCCCcEEEEeCCCCCccceec--ccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee----EE
Q 000709 229 LLVSGGSDGLLILWSADHGQDSRELV--PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE----LR 302 (1339)
Q Consensus 229 ~LaSgS~DgtVrVWDl~tg~~~~~~~--~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~----l~ 302 (1339)
.++| ++|=.|.+|++.-......++ ....+..-..-|++..|||. ...+++-.+..|+|++.|++.... -+
T Consensus 178 t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 178 TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 8887 568899999987543222111 01112222345889999994 667888889999999999984221 01
Q ss_pred EecCCC------cccccCCceeEEEeCCCCCEEEEecCC--eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEE
Q 000709 303 RIKPVP------KLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYC 374 (1339)
Q Consensus 303 ~~~~~~------~l~~H~~~V~svafspdg~iLs~s~Dg--~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ 374 (1339)
.|.... -+.+--..|..+.|+++|+++..-.-- +|||++.........++.+.........+..+.-..=..
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFe 334 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFE 334 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeE
Confidence 111111 012223467789999999976443222 489997432111111111100000001111111112345
Q ss_pred EEEecCCCcEEEEEECCCeEEEEecC
Q 000709 375 MVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 375 la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
++|+. +...++||+....+ ++++.
T Consensus 335 c~~sg-~~~~v~TGsy~n~f-rvf~~ 358 (433)
T KOG1354|consen 335 CSWSG-NDSYVMTGSYNNVF-RVFNL 358 (433)
T ss_pred EEEcC-CcceEecccccceE-EEecC
Confidence 78888 45669999999986 88873
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=4.1e-07 Score=108.40 Aligned_cols=212 Identities=10% Similarity=0.147 Sum_probs=149.1
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEE
Q 000709 20 HPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1339)
Q Consensus 20 SPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~Irl 99 (1339)
.|-+.|+|....||.+||||..+++...+|.....- .+ .++--.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~----------------------------s~--------t~~~~~ 45 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL----------------------------SG--------TCTYTK 45 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhc----------------------------cC--------cceeEE
Confidence 345679999999999999999999988888632100 01 122223
Q ss_pred EEcCCcc-ccccccccccccCCCCeeeeee---CCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEee
Q 000709 100 WQLWRNR-AAAAEAPTAVSNVTSGFASPPP---STKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLS 174 (1339)
Q Consensus 100 WDl~~~~-~l~~~~~~~~~~~~~~V~slaf---spdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P 174 (1339)
|.+.-.. +++ ..++.+ ...+...++-|...|.+.. +...++.........|.+.|.++.+
T Consensus 46 w~L~~~~s~~k-------------~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~-- 110 (541)
T KOG4547|consen 46 WGLSADYSPMK-------------WLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILD-- 110 (541)
T ss_pred EEEEeccchHH-------------HHhHHHHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeec--
Confidence 3322111 110 001111 0123347777777777744 8887776555455788999999999
Q ss_pred ccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceec
Q 000709 175 RSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELV 254 (1339)
Q Consensus 175 ~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~ 254 (1339)
+.+-..|.+++.|+.+..|+....+.++.+. +....+.+++ .+||+..+++++ ++|++||+.+++.+..
T Consensus 111 ---~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~---is~D~~~l~~as--~~ik~~~~~~kevv~~-- 179 (541)
T KOG4547|consen 111 ---AQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLC---ISPDGKILLTAS--RQIKVLDIETKEVVIT-- 179 (541)
T ss_pred ---ccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEE---EcCCCCEEEecc--ceEEEEEccCceEEEE--
Confidence 5667789999999999999999999988887 7888888887 899999999876 6899999999987765
Q ss_pred ccccccccccceEEEEeeccCC--CCCEEE-EEeCCCcEEEEECCC
Q 000709 255 PKLSLKAHDGGVVAVELSRVMG--GSPQLI-TIGADKTLAIWDTVS 297 (1339)
Q Consensus 255 ~~~~l~gH~~~V~svafsp~~~--dg~~La-Sgs~Dg~IrIWDl~t 297 (1339)
+.||.+.|.++.|--..+ .|.+++ +...+.-+.+|-...
T Consensus 180 ----ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 180 ----FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ----ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 699999999999987211 134444 444566677776543
No 250
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.70 E-value=6e-07 Score=98.85 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=117.1
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC-C
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI-S 200 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~-t 200 (1339)
..++.|++.+. -++++-.++.+ .++...+..+.+...+.|.-......|. ..+.+++.+|++|+.+..||++ .
T Consensus 124 ~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~----~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFS----DKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecc----cCCCceEEecCCCceEEEEEecCC
Confidence 45778888887 45666566655 4566666666667788999999999995 3456899999999999999999 4
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-CCccceecccccccccccceEEEEeeccCCCCC
Q 000709 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 201 ~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
++.+..-..-|...|.++. ..+|.+.+|++|+.|-.|++||.++ ++.+.. ..-.++|+.+.++|. ...
T Consensus 199 ~~~i~~n~kvH~~GV~SI~--ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-------~~v~GGVWRi~~~p~--~~~ 267 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIY--SSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-------AKVGGGVWRIKHHPE--IFH 267 (339)
T ss_pred cceeeecceeeecceEEEe--cCCCCCceEEEeccccceeeeehhcccCcccc-------CccccceEEEEecch--hhh
Confidence 4555443347999999996 3567789999999999999999984 444332 223488999999994 334
Q ss_pred EEEEEeCCCcEEEEECCCCe
Q 000709 280 QLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 280 ~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
.++.++.-+-.+|-+++.+.
T Consensus 268 ~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 268 RLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred HHHHHHHhcCceEEEecccc
Confidence 44555555556777776543
No 251
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=3.6e-06 Score=103.31 Aligned_cols=155 Identities=13% Similarity=0.046 Sum_probs=105.0
Q ss_pred EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCCeeEEEEee
Q 000709 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFM 222 (1339)
Q Consensus 146 ~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~ 222 (1339)
++|......+. ...+...+.+..| +|||+.|+..+. +..|++||+.+++.. .+. .+.+.+.+..
T Consensus 186 ~~d~dg~~~~~---lt~~~~~v~~p~w-----SpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~-~~~g~~~~~~--- 252 (435)
T PRK05137 186 IMDQDGANVRY---LTDGSSLVLTPRF-----SPNRQEITYMSYANGRPRVYLLDLETGQRE-LVG-NFPGMTFAPR--- 252 (435)
T ss_pred EECCCCCCcEE---EecCCCCeEeeEE-----CCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eee-cCCCcccCcE---
Confidence 44765543322 3466778999999 889999988764 468999999887653 333 4556666665
Q ss_pred eCCCCCEEE-EEeCCCc--EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC-CC--cEEEEECC
Q 000709 223 ASSGEALLV-SGGSDGL--LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DK--TLAIWDTV 296 (1339)
Q Consensus 223 ~spdg~~La-SgS~Dgt--VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-Dg--~IrIWDl~ 296 (1339)
++|+|+.|+ +.+.++. |.+||+.++...+ +..|........|+| |++.|+..+. ++ .|++||+.
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-------Lt~~~~~~~~~~~sp---DG~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-------LTDSPAIDTSPSYSP---DGSQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEE-------ccCCCCccCceeEcC---CCCEEEEEECCCCCCeEEEEECC
Confidence 689998775 5555655 7777888765322 344555567789999 7888877664 33 68888987
Q ss_pred CCeeEEEecCCCcccccCCceeEEEeCCCCCEEE
Q 000709 297 SFKELRRIKPVPKLACHSVASWCHPRAPNLDILT 330 (1339)
Q Consensus 297 t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs 330 (1339)
+++.. .+ ..+...+....|+|||+.|+
T Consensus 323 g~~~~-~l------t~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 323 GSNPR-RI------SFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCeE-Ee------ecCCCcccCeEECCCCCEEE
Confidence 66543 32 22233455678999999664
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=1.7e-05 Score=90.49 Aligned_cols=224 Identities=12% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEec--Cc-EE--EEEecCCceeeccccccCCCCeE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV--NK-AI--FLDLVTMRGRDIPKQELDNKSLV 168 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~--dg-~I--~wD~~t~~~~~v~~~~~h~~~V~ 168 (1339)
++.|.+|++.+...... ...........+-++|+|+++.+.++... .+ +. .||..+++...+..........+
T Consensus 15 s~gI~v~~ld~~~g~l~--~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELS--LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccc--hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 56788998874432211 11112225567789999999844444433 33 33 45766677665555555556668
Q ss_pred EEEEeeccccCCCCEEEEEE-CCCcEEEEECCC-CeE---EEEEecCCCCC----------eeEEEEeeeCCCCCEEEEE
Q 000709 169 CMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS-WKL---VRRYTGGHKGS----------ISCLMTFMASSGEALLVSG 233 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t-~~~---i~~l~~gH~~~----------V~sl~wf~~spdg~~LaSg 233 (1339)
.+++ ++++++++++. ..|.|.++-++. |.. +..+ .|.+. +.+.. +.|++++|+++
T Consensus 93 yvsv-----d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~--~h~g~~p~~rQ~~~h~H~a~---~tP~~~~l~v~ 162 (346)
T COG2706 93 YVSV-----DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV--KHTGSGPHERQESPHVHSAN---FTPDGRYLVVP 162 (346)
T ss_pred EEEE-----CCCCCEEEEEEccCceEEEEEcccCCccccceeee--ecCCCCCCccccCCccceee---eCCCCCEEEEe
Confidence 8888 88999998887 568999999865 322 2222 24443 55554 89999999988
Q ss_pred eC-CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEe-CCCcEEEEECCCC-eeEEEecCCCcc
Q 000709 234 GS-DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDTVSF-KELRRIKPVPKL 310 (1339)
Q Consensus 234 S~-DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl~t~-~~l~~~~~~~~l 310 (1339)
.. --.|.+|++..|..... . ...+ .-..+...|.||| ++++....+ -+++|-+|.+... ..+..++.+..+
T Consensus 163 DLG~Dri~~y~~~dg~L~~~-~-~~~v-~~G~GPRHi~FHp---n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 163 DLGTDRIFLYDLDDGKLTPA-D-PAEV-KPGAGPRHIVFHP---NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred ecCCceEEEEEcccCccccc-c-cccc-CCCCCcceEEEcC---CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 65 24789999997765432 1 1112 3456688999999 788877666 5999999999873 233333333322
Q ss_pred c---ccCCceeEEEeCCCCCEEEEecCC
Q 000709 311 A---CHSVASWCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 311 ~---~H~~~V~svafspdg~iLs~s~Dg 335 (1339)
. .-......+..++||++|-+|.-+
T Consensus 237 P~dF~g~~~~aaIhis~dGrFLYasNRg 264 (346)
T COG2706 237 PEDFTGTNWAAAIHISPDGRFLYASNRG 264 (346)
T ss_pred ccccCCCCceeEEEECCCCCEEEEecCC
Confidence 2 122345588899999999666555
No 253
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1.4e-06 Score=106.71 Aligned_cols=197 Identities=18% Similarity=0.084 Sum_probs=119.9
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEe-cCc---EEEEEecCCceeeccccccCCCCeEEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-VNK---AIFLDLVTMRGRDIPKQELDNKSLVCM 170 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs-~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~v 170 (1339)
..|.+||....... ....+ ...+.+.+|+|||+ .|+..+ .++ +.+||+.+++...+. .....+.+.
T Consensus 176 ~~L~~~D~dG~~~~-----~l~~~-~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~ 245 (427)
T PRK02889 176 YQLQISDADGQNAQ-----SALSS-PEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAP 245 (427)
T ss_pred cEEEEECCCCCCce-----EeccC-CCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccce
Confidence 35666666443221 11222 45688899999998 555444 222 346698887654432 223455678
Q ss_pred EEeeccccCCCCEEE-EEECCCcEEEEE--CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCC-
Q 000709 171 EFLSRSAVGDVPLVA-FGSSDGVIRVLS--MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSAD- 245 (1339)
Q Consensus 171 af~P~s~Spdg~~La-sGs~DgtIrIWD--l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~- 245 (1339)
.| +|||+.|+ +.+.+|...||. ..++. ...+. .|........ ++|||+.|+..+. +|...+|.+.
T Consensus 246 ~~-----SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~---wSpDG~~l~f~s~~~g~~~Iy~~~~ 315 (427)
T PRK02889 246 AW-----SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPF---FSPDGRSIYFTSDRGGAPQIYRMPA 315 (427)
T ss_pred EE-----CCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeE---EcCCCCEEEEEecCCCCcEEEEEEC
Confidence 89 78998887 456777766665 44444 34444 4555555565 6899998876654 4667777654
Q ss_pred -CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC---cEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 246 -HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 246 -tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
++.. .. .++. ........|+| ++++|+..+.++ .|.+||+.+++.... ..+ .......
T Consensus 316 ~~g~~-~~----lt~~--g~~~~~~~~Sp---DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-------t~~-~~~~~p~ 377 (427)
T PRK02889 316 SGGAA-QR----VTFT--GSYNTSPRISP---DGKLLAYISRVGGAFKLYVQDLATGQVTAL-------TDT-TRDESPS 377 (427)
T ss_pred CCCce-EE----EecC--CCCcCceEECC---CCCEEEEEEccCCcEEEEEEECCCCCeEEc-------cCC-CCccCce
Confidence 3332 11 1122 22234578999 888988777654 699999988764322 111 2235689
Q ss_pred eCCCCCEE
Q 000709 322 RAPNLDIL 329 (1339)
Q Consensus 322 fspdg~iL 329 (1339)
|+|||+.|
T Consensus 378 ~spdg~~l 385 (427)
T PRK02889 378 FAPNGRYI 385 (427)
T ss_pred ECCCCCEE
Confidence 99999965
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.64 E-value=1.3e-06 Score=95.31 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=94.5
Q ss_pred cCCCCEEEEEEC----------CCcEEEEECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE--eCCCcEEEEeC
Q 000709 178 VGDVPLVAFGSS----------DGVIRVLSMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSG--GSDGLLILWSA 244 (1339)
Q Consensus 178 Spdg~~LasGs~----------DgtIrIWDl~t-~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg--S~DgtVrVWDl 244 (1339)
+++|.+|+.-.. -+...+|.++. ...+..+.-...+.|.+++ ++|+|+.|+.. ..++.|.+||+
T Consensus 14 ~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~---WsP~g~~favi~g~~~~~v~lyd~ 90 (194)
T PF08662_consen 14 QPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVA---WSPNGNEFAVIYGSMPAKVTLYDV 90 (194)
T ss_pred cccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEE---ECcCCCEEEEEEccCCcccEEEcC
Confidence 567777665433 13355555532 2334444323556799998 58899887554 46789999999
Q ss_pred CCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC---CCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 245 DHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~---Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
+ ++.+.. + +...++.+.|+| +|++|++++. .|.|.+||.++.+.+..+ .| ..++.+.
T Consensus 91 ~-~~~i~~------~--~~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-------~~-~~~t~~~ 150 (194)
T PF08662_consen 91 K-GKKIFS------F--GTQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-------EH-SDATDVE 150 (194)
T ss_pred c-ccEeEe------e--cCCCceEEEECC---CCCEEEEEEccCCCcEEEEEECCCCEEeecc-------cc-CcEEEEE
Confidence 6 333322 2 345688999999 8999999875 467999999988887662 23 3467999
Q ss_pred eCCCCCEE-EEec------CC--eEEEcc
Q 000709 322 RAPNLDIL-TCVK------DS--HIWAIE 341 (1339)
Q Consensus 322 fspdg~iL-s~s~------Dg--~LWDi~ 341 (1339)
|+|+|+++ +++. |. +||++.
T Consensus 151 WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 151 WSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99999966 3332 32 378876
No 255
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=4.6e-06 Score=102.62 Aligned_cols=170 Identities=14% Similarity=0.046 Sum_probs=100.2
Q ss_pred eeeeeCCCCCeEEEEEecCcE---EEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CC--cEEEEE
Q 000709 124 ASPPPSTKGRHFLVICCVNKA---IFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVLS 197 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg~---I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-Dg--tIrIWD 197 (1339)
....|+|||+.++++.+.++. .++|..+++.+.+ ..+........| +|||++|+..+. ++ .|.++|
T Consensus 265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~l---t~~~~~~~~p~w-----SpDG~~I~f~s~~~g~~~Iy~~d 336 (448)
T PRK04792 265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRI---TRHRAIDTEPSW-----HPDGKSLIFTSERGGKPQIYRVN 336 (448)
T ss_pred CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEEC---ccCCCCccceEE-----CCCCCEEEEEECCCCCceEEEEE
Confidence 356899999966666666663 3558877765443 233445567788 789998877664 33 466778
Q ss_pred CCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 198 MISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 198 l~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dg--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
+.+++...... +........ ++|+|++|+..+. ++ .|.++|+.++... . +... .......|+|
T Consensus 337 l~~g~~~~Lt~--~g~~~~~~~---~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~------lt~~-~~d~~ps~sp- 402 (448)
T PRK04792 337 LASGKVSRLTF--EGEQNLGGS---ITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-V------LTST-RLDESPSVAP- 402 (448)
T ss_pred CCCCCEEEEec--CCCCCcCee---ECCCCCEEEEEEecCCceEEEEEECCCCCeE-E------ccCC-CCCCCceECC-
Confidence 87776543322 222233344 6899998877655 34 3555677766531 1 1111 1122347999
Q ss_pred CCCCCEEEEEe-CCCc--EEEEECCCCeeEEEecCCCcccccCCceeEEEeCC
Q 000709 275 MGGSPQLITIG-ADKT--LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 275 ~~dg~~LaSgs-~Dg~--IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafsp 324 (1339)
++++|+..+ .++. +.+++. ++...+. +..+...+...+|+|
T Consensus 403 --dG~~I~~~~~~~g~~~l~~~~~-~G~~~~~------l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 403 --NGTMVIYSTTYQGKQVLAAVSI-DGRFKAR------LPAGQGEVKSPAWSP 446 (448)
T ss_pred --CCCEEEEEEecCCceEEEEEEC-CCCceEE------CcCCCCCcCCCccCC
Confidence 677766554 4443 667776 4554444 233444556677776
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=5.5e-06 Score=101.49 Aligned_cols=172 Identities=14% Similarity=0.029 Sum_probs=101.0
Q ss_pred eeeeeeCCCCCeEEEEEecCc--EE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC-CC--cEEEE
Q 000709 123 FASPPPSTKGRHFLVICCVNK--AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS-DG--VIRVL 196 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg--~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~-Dg--tIrIW 196 (1339)
+....|+|||+.++++.+.++ .+ ++|..+++...+ ..+........| +|||+.|+..+. +| .|+++
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~l---t~~~~~~~~~~~-----spDg~~i~f~s~~~g~~~iy~~ 316 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRV---TNHPAIDTEPFW-----GKDGRTLYFTSDRGGKPQIYKV 316 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEc---ccCCCCcCCeEE-----CCCCCEEEEEECCCCCceEEEE
Confidence 345789999985655655444 23 558887765443 223344556678 789998877764 33 57778
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-C--cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-G--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-g--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
|+.+++..+....+ ....... ++|+|+.|+..+.+ + .|.+||+.++... .+ . +........|+|
T Consensus 317 d~~~g~~~~lt~~~--~~~~~~~---~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~l------t-~~~~~~~p~~sp 383 (430)
T PRK00178 317 NVNGGRAERVTFVG--NYNARPR---LSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-IL------T-DTSLDESPSVAP 383 (430)
T ss_pred ECCCCCEEEeecCC--CCccceE---ECCCCCEEEEEEccCCceEEEEEECCCCCEE-Ec------c-CCCCCCCceECC
Confidence 88777654332212 2223343 68999998877653 3 5788998877532 11 1 111222458999
Q ss_pred cCCCCCEEEEEeCC---CcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC
Q 000709 274 VMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN 325 (1339)
Q Consensus 274 ~~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd 325 (1339)
++++|+..+.+ ..|.+++... ...+. +..+.+.+...+|+|-
T Consensus 384 ---dg~~i~~~~~~~g~~~l~~~~~~g-~~~~~------l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 384 ---NGTMLIYATRQQGRGVLMLVSING-RVRLP------LPTAQGEVREPSWSPY 428 (430)
T ss_pred ---CCCEEEEEEecCCceEEEEEECCC-CceEE------CcCCCCCcCCCccCCC
Confidence 77777766543 3466677753 33333 2233344556666653
No 257
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=6.9e-06 Score=99.81 Aligned_cols=347 Identities=12% Similarity=0.109 Sum_probs=211.2
Q ss_pred eEEecCCCCCEEEEEEcCC------------CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-----ccc-c
Q 000709 4 LKAFRPTNDKIVKIQLHPT------------HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-----AKL-E 65 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPd------------g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-----~d~-~ 65 (1339)
++.++-|...|+.+.|.|- ..+||+++..|.|.+||...+..+..++ ++.+.+.-++ ++. .
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchh
Confidence 6788999999999999862 2378889999999999999888877776 3333332222 222 2
Q ss_pred eeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCC-CCeEEEEEecCcE
Q 000709 66 KLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-GRHFLVICCVNKA 144 (1339)
Q Consensus 66 ~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspd-g~~lLasgs~dg~ 144 (1339)
.|+.-+ ....+.+|+..+|+... ..... .....|+.+.|- .+++.+.|+.+-.
T Consensus 127 ~LlaIh---------------------~ss~lvLwntdtG~k~W---k~~ys--~~iLs~f~~DPfd~rh~~~l~s~g~v 180 (1062)
T KOG1912|consen 127 VLLAIH---------------------GSSTLVLWNTDTGEKFW---KYDYS--HEILSCFRVDPFDSRHFCVLGSKGFV 180 (1062)
T ss_pred eeEEec---------------------CCcEEEEEEccCCceee---ccccC--CcceeeeeeCCCCcceEEEEccCceE
Confidence 222211 35688999999987653 22222 334566777774 3445555555444
Q ss_pred EEEE-ecCCc----eeeccccccCCC----------------C-------eEE--EEEeeccccCCCCEEEEEECCCcEE
Q 000709 145 IFLD-LVTMR----GRDIPKQELDNK----------------S-------LVC--MEFLSRSAVGDVPLVAFGSSDGVIR 194 (1339)
Q Consensus 145 I~wD-~~t~~----~~~v~~~~~h~~----------------~-------V~~--vaf~P~s~Spdg~~LasGs~DgtIr 194 (1339)
+..+ ....+ .+.......|.+ . .+| .+| +|.-+.++.......+.
T Consensus 181 l~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf-----~p~~rn~lfi~~prell 255 (1062)
T KOG1912|consen 181 LSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAF-----SPHWRNILFITFPRELL 255 (1062)
T ss_pred EEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhc-----ChhhhceEEEEeccceE
Confidence 4443 21110 111111111111 0 112 334 44545555555677899
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC----------------CCccc-------
Q 000709 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH----------------GQDSR------- 251 (1339)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t----------------g~~~~------- 251 (1339)
|+|++-..++.... -..+.+.-+.|+ ..+....|++...||.+.+|--+. +...+
T Consensus 256 v~dle~~~~l~vvp-ier~~akfv~vl-P~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~ 333 (1062)
T KOG1912|consen 256 VFDLEYECCLAVVP-IERGGAKFVDVL-PDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEE 333 (1062)
T ss_pred EEcchhhceeEEEE-eccCCcceeEec-cCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechh
Confidence 99999877777664 445555555553 556667788888888888885432 10000
Q ss_pred ----------------------------e----------------------------------ecccccccccccceEEE
Q 000709 252 ----------------------------E----------------------------------LVPKLSLKAHDGGVVAV 269 (1339)
Q Consensus 252 ----------------------------~----------------------------------~~~~~~l~gH~~~V~sv 269 (1339)
+ +.....-.+|..++.+.
T Consensus 334 ~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~ 413 (1062)
T KOG1912|consen 334 FRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCV 413 (1062)
T ss_pred cccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceee
Confidence 0 00000012466677776
Q ss_pred EeeccC--------CC-------CCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecC
Q 000709 270 ELSRVM--------GG-------SPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD 334 (1339)
Q Consensus 270 afsp~~--------~d-------g~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~D 334 (1339)
..+|.. .. -++++.|...|+|.++|+.++..-.. +..|+..|.++.|-.+..+++.+..
T Consensus 414 ~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~------fsvht~~VkgleW~g~sslvSfsys 487 (1062)
T KOG1912|consen 414 RMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAAS------FSVHTSLVKGLEWLGNSSLVSFSYS 487 (1062)
T ss_pred ecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhh------hcccccceeeeeeccceeEEEeeec
Confidence 666531 01 24788999999999999998876555 5789999999999988888854411
Q ss_pred ------C------eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 335 ------S------HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 335 ------g------~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
| .|-|++++. ...+++ +......+|..+..|. .+.+++..-.+.-+ .+||.+.
T Consensus 488 ~~n~~sg~vrN~l~vtdLrtGl----sk~fR~---------l~~~despI~~irvS~-~~~yLai~Fr~~pl-Eiwd~kt 552 (1062)
T KOG1912|consen 488 HVNSASGGVRNDLVVTDLRTGL----SKRFRG---------LQKPDESPIRAIRVSS-SGRYLAILFRREPL-EIWDLKT 552 (1062)
T ss_pred cccccccceeeeEEEEEccccc----cccccc---------CCCCCcCcceeeeecc-cCceEEEEecccch-HHHhhcc
Confidence 1 145677652 222221 1223334889999988 57778888888886 7999976
Q ss_pred CCC
Q 000709 403 LPA 405 (1339)
Q Consensus 403 ~p~ 405 (1339)
...
T Consensus 553 ~~~ 555 (1062)
T KOG1912|consen 553 LRM 555 (1062)
T ss_pred chH
Confidence 443
No 258
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.55 E-value=4.7e-05 Score=89.69 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=142.7
Q ss_pred EcCCCCEEEEEeC----------CCeEEEEECCCCcEEEEEeccCccc--------eEEeccccceeEeeccccCCCccc
Q 000709 19 LHPTHPWLVTADA----------SDHVSVWNWEHRQVIYELKAGGVDQ--------RRLVGAKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 19 fSPdg~~LaSgs~----------DGtIrIWDl~tg~~l~~~~~~~~~~--------i~~vs~d~~~Lasgs~d~~gk~~~ 80 (1339)
+||||+.|+.+.. +..|.|||..+++.+.++..+.... .+.++++++.|.....++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p------ 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP------ 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC------
Confidence 9999997776654 7899999999999999998643323 667779998887654331
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEe-cCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDL-VTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~-~t~~~~~v~~ 159 (1339)
+..+.+.|+.+++.+.... . ..+..-...+. .. +.+.|.+.....+.+ .+++......
T Consensus 127 -------------~~~V~VvD~~~~kvv~ei~---v---p~~~~vy~t~e-~~-~~~~~~Dg~~~~v~~d~~g~~~~~~~ 185 (352)
T TIGR02658 127 -------------SPAVGVVDLEGKAFVRMMD---V---PDCYHIFPTAN-DT-FFMHCRDGSLAKVGYGTKGNPKIKPT 185 (352)
T ss_pred -------------CCEEEEEECCCCcEEEEEe---C---CCCcEEEEecC-Cc-cEEEeecCceEEEEecCCCceEEeee
Confidence 7788999998887653110 0 01111111111 11 222233333333211 1111110000
Q ss_pred cccCC--CCeEEE-EEeeccccCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecC------CCCCeeEEEEeeeCC
Q 000709 160 QELDN--KSLVCM-EFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-----KLVRRYTGG------HKGSISCLMTFMASS 225 (1339)
Q Consensus 160 ~~~h~--~~V~~v-af~P~s~Spdg~~LasGs~DgtIrIWDl~t~-----~~i~~l~~g------H~~~V~sl~wf~~sp 225 (1339)
...+. .++..- .|. ..+|.++..... |+|.+.|+... ..+..+..+ +.+...-++ +++
T Consensus 186 ~vf~~~~~~v~~rP~~~----~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia---~~~ 257 (352)
T TIGR02658 186 EVFHPEDEYLINHPAYS----NKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA---YHR 257 (352)
T ss_pred eeecCCccccccCCceE----cCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE---EcC
Confidence 11111 111000 231 227777766655 99999996432 222222111 223333454 788
Q ss_pred CCCEEEEEeC----------CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC-EEEEEe-CCCcEEEE
Q 000709 226 GEALLVSGGS----------DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIG-ADKTLAIW 293 (1339)
Q Consensus 226 dg~~LaSgS~----------DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~-~LaSgs-~Dg~IrIW 293 (1339)
+++.+..... .+.|.++|..+++.+..+ . -...+..++++| |++ +|++.. .++.|.+.
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i------~-vG~~~~~iavS~---Dgkp~lyvtn~~s~~VsVi 327 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI------E-LGHEIDSINVSQ---DAKPLLYALSTGDKTLYIF 327 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE------e-CCCceeeEEECC---CCCeEEEEeCCCCCcEEEE
Confidence 8888877432 257999999998876652 1 234689999999 666 777555 68899999
Q ss_pred ECCCCeeEEEe
Q 000709 294 DTVSFKELRRI 304 (1339)
Q Consensus 294 Dl~t~~~l~~~ 304 (1339)
|..+++.++++
T Consensus 328 D~~t~k~i~~i 338 (352)
T TIGR02658 328 DAETGKELSSV 338 (352)
T ss_pred ECcCCeEEeee
Confidence 99999998885
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=0.00014 Score=86.61 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=149.8
Q ss_pred CEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--c--EEEEEe-ccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 13 KIVKIQLHPTHPWLVTADA----SDHVSVWNWEHR--Q--VIYELK-AGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSgs~----DGtIrIWDl~tg--~--~l~~~~-~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
.-..++++|++++|.+... +|.|..|++... + .+.+.. .+....-..+.++++.|.++..
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany----------- 106 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY----------- 106 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET-----------
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc-----------
Confidence 4456889999999988866 579999988764 3 344443 2222233344577777776542
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccc---------cccCCCCeeeeeeCCCCCeEEEEEe-cCcEEEEEecCCc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTA---------VSNVTSGFASPPPSTKGRHFLVICC-VNKAIFLDLVTMR 153 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~---------~~~~~~~V~slafspdg~~lLasgs-~dg~I~wD~~t~~ 153 (1339)
.+|.+.++++.....+....... .........++.|+|+++.++++.- .|.+.++++....
T Consensus 107 ---------~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 107 ---------GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp ---------TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred ---------cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 36677777766532211110000 0111345788999999985555443 4444466665543
Q ss_pred --eeecccc-ccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECC--CCe--EEEEEe---cCCCC--CeeEEEE
Q 000709 154 --GRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMI--SWK--LVRRYT---GGHKG--SISCLMT 220 (1339)
Q Consensus 154 --~~~v~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~--t~~--~i~~l~---~gH~~--~V~sl~w 220 (1339)
....... .......+.+.| +|+++++.+.+ .+++|.+|++. ++. .+..+. .+..+ ....+.
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f-----~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~- 251 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAF-----SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA- 251 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE-
T ss_pred ceEEEeeccccccCCCCcEEEE-----cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE-
Confidence 3222122 234668999999 67898876655 67889999988 442 333332 11122 345554
Q ss_pred eeeCCCCCEEEEEe-CCCcEEEEeCCCC-CccceecccccccccccceEEEEeeccCCCCCEEEEEe-CCCcEEEEEC--
Q 000709 221 FMASSGEALLVSGG-SDGLLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLAIWDT-- 295 (1339)
Q Consensus 221 f~~spdg~~LaSgS-~DgtVrVWDl~tg-~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~IrIWDl-- 295 (1339)
++|+|++|.++. .+++|.+|++... ..+.. ...+.........+.++| ++++|+++. .++.|.+|++
T Consensus 252 --ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~---~~~~~~~G~~Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 252 --ISPDGRFLYVSNRGSNSISVFDLDPATGTLTL---VQTVPTGGKFPRHFAFSP---DGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp --E-TTSSEEEEEECTTTEEEEEEECTTTTTEEE---EEEEEESSSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEET
T ss_pred --EecCCCEEEEEeccCCEEEEEEEecCCCceEE---EEEEeCCCCCccEEEEeC---CCCEEEEEecCCCeEEEEEEeC
Confidence 899999877655 5778999999432 22221 112232334588999999 788888776 5778999876
Q ss_pred CCCeeEE
Q 000709 296 VSFKELR 302 (1339)
Q Consensus 296 ~t~~~l~ 302 (1339)
.+|....
T Consensus 324 ~tG~l~~ 330 (345)
T PF10282_consen 324 DTGKLTP 330 (345)
T ss_dssp TTTEEEE
T ss_pred CCCcEEE
Confidence 5666433
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.53 E-value=7.5e-05 Score=88.90 Aligned_cols=252 Identities=12% Similarity=0.057 Sum_probs=145.3
Q ss_pred CeeeeeeCCCCCeEEEEEec----CcEE-EEEe--cCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcE
Q 000709 122 GFASPPPSTKGRHFLVICCV----NKAI-FLDL--VTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVI 193 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~----dg~I-~wD~--~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtI 193 (1339)
....++++|+++ +|.+... ++.+ .+.+ .++++..+............+++ ++++++|+++. .+|.|
T Consensus 38 ~Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~-----~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 38 NPSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAV-----DPDGRFLYVANYGGGSV 111 (345)
T ss_dssp SECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEE-----CTTSSEEEEEETTTTEE
T ss_pred CCceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEE-----ecCCCEEEEEEccCCeE
Confidence 456688999998 5555544 4455 4444 33555555444445667788998 78999998887 58999
Q ss_pred EEEECCC-CeEEEE---Eec---------CCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCc-cceeccccc
Q 000709 194 RVLSMIS-WKLVRR---YTG---------GHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQD-SRELVPKLS 258 (1339)
Q Consensus 194 rIWDl~t-~~~i~~---l~~---------gH~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~tg~~-~~~~~~~~~ 258 (1339)
.++++.. +..... +.. .......++. ++|+++++++... ...|.+|++..... +.. .....
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~---~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~-~~~~~ 187 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVV---FSPDGRFVYVPDLGADRVYVYDIDDDTGKLTP-VDSIK 187 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEE---E-TTSSEEEEEETTTTEEEEEEE-TTS-TEEE-EEEEE
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEE---ECCCCCEEEEEecCCCEEEEEEEeCCCceEEE-eeccc
Confidence 9999986 433322 210 0123345554 7999998877643 45799999977652 211 11111
Q ss_pred ccccccceEEEEeeccCCCCCEEEE-EeCCCcEEEEECC--CCe--eEEEecCCCcccccCCceeEEEeCCCCCEEEEe-
Q 000709 259 LKAHDGGVVAVELSRVMGGSPQLIT-IGADKTLAIWDTV--SFK--ELRRIKPVPKLACHSVASWCHPRAPNLDILTCV- 332 (1339)
Q Consensus 259 l~gH~~~V~svafsp~~~dg~~LaS-gs~Dg~IrIWDl~--t~~--~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s- 332 (1339)
+ ....+...+.|+| +++++.. .-.+++|.+|++. ++. .++.+.....-.........+.++|||++|-.+
T Consensus 188 ~-~~G~GPRh~~f~p---dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 188 V-PPGSGPRHLAFSP---DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp C-STTSSEEEEEE-T---TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEE
T ss_pred c-ccCCCCcEEEEcC---CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEe
Confidence 2 3446689999999 6776654 4568899999988 443 333332221111112256689999999976333
Q ss_pred -cCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecC
Q 000709 333 -KDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDP 400 (1339)
Q Consensus 333 -~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~ 400 (1339)
.++. +|+++.... .+ ..+..+...+. ....++++|++..+++++..++.| .+|+.
T Consensus 264 r~~~sI~vf~~d~~~g-----~l------~~~~~~~~~G~-~Pr~~~~s~~g~~l~Va~~~s~~v-~vf~~ 321 (345)
T PF10282_consen 264 RGSNSISVFDLDPATG-----TL------TLVQTVPTGGK-FPRHFAFSPDGRYLYVANQDSNTV-SVFDI 321 (345)
T ss_dssp CTTTEEEEEEECTTTT-----TE------EEEEEEEESSS-SEEEEEE-TTSSEEEEEETTTTEE-EEEEE
T ss_pred ccCCEEEEEEEecCCC-----ce------EEEEEEeCCCC-CccEEEEeCCCCEEEEEecCCCeE-EEEEE
Confidence 2333 688742211 00 01122222333 578899999666655555567776 56654
No 261
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.52 E-value=4.2e-06 Score=99.96 Aligned_cols=188 Identities=11% Similarity=0.154 Sum_probs=139.8
Q ss_pred EEEEEecCcEE-EEEecCCceeeccccccC-CCCeEEEEEe------ec---------cccCCCCEEEEEECCCcEEEEE
Q 000709 135 FLVICCVNKAI-FLDLVTMRGRDIPKQELD-NKSLVCMEFL------SR---------SAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 135 lLasgs~dg~I-~wD~~t~~~~~v~~~~~h-~~~V~~vaf~------P~---------s~Spdg~~LasGs~DgtIrIWD 197 (1339)
+++....||.+ +||...++...-.....+ .+.-.+..|. |. -.+.+-..++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 77777777777 668777655432222222 2333444442 21 0134556788899999999999
Q ss_pred CCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 198 MISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 198 l~t~~~i~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
...++....+. ..|.+.|.++. .+.+-.+|.|++.|+.+..|+...+..++. +.+....+.+++++|
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~---~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~------~~~~~~~~~sl~is~--- 154 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEIL---DAQRLGCIYSVGADLKVVYILEKEKVIIRI------WKEQKPLVSSLCISP--- 154 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeee---cccccCceEecCCceeEEEEecccceeeee------eccCCCccceEEEcC---
Confidence 99999988886 67999999997 466778999999999999999998877665 355666789999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCC-----CCEE-EE--ecCC-eEEEccC
Q 000709 277 GSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPN-----LDIL-TC--VKDS-HIWAIEH 342 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspd-----g~iL-s~--s~Dg-~LWDi~t 342 (1339)
|+.++++++ ++|++||+++++.+.+ +.||.+.|+++.|.-+ |.++ ++ ...+ .+|-+..
T Consensus 155 D~~~l~~as--~~ik~~~~~~kevv~~------ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTAS--RQIKVLDIETKEVVIT------FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEecc--ceEEEEEccCceEEEE------ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 788998887 7899999999999988 5899999999999766 5544 32 2222 3787664
No 262
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.49 E-value=1.3e-05 Score=97.42 Aligned_cols=198 Identities=19% Similarity=0.129 Sum_probs=122.9
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC--cEE-EEEecCCceeeccccccCCCCeEEEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d--g~I-~wD~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
..|.++|...... .....+ ...+.+..|+|+|+.++.+...+ ..+ +||+.+++...+ ..+...+.++.
T Consensus 170 ~~l~~~d~~g~~~-----~~l~~~-~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~~~~~~~~ 240 (417)
T TIGR02800 170 YELQVADYDGANP-----QTITRS-REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---ASFPGMNGAPA 240 (417)
T ss_pred ceEEEEcCCCCCC-----EEeecC-CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---ecCCCCccceE
Confidence 3577777754322 122222 44678889999998444433332 234 668887754433 23344566788
Q ss_pred EeeccccCCCCEEEEE-ECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-C--cEEEEeCC
Q 000709 172 FLSRSAVGDVPLVAFG-SSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-G--LLILWSAD 245 (1339)
Q Consensus 172 f~P~s~Spdg~~LasG-s~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-g--tVrVWDl~ 245 (1339)
| +|||+.|+.. +.++ .|++||+.++... .+. .|........ ++++++.|+.++.. + .|.+||+.
T Consensus 241 ~-----spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~---~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 241 F-----SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT-NGPGIDTEPS---WSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred E-----CCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC-CCCCCCCCEE---ECCCCCEEEEEECCCCCceEEEEECC
Confidence 9 7899877654 4444 5889999877543 333 3444444555 57899988766543 3 57778877
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC---cEEEEECCCCeeEEEecCCCcccccCCceeEEEe
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK---TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPR 322 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg---~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svaf 322 (1339)
+++... +..+...+....|+| ++.+|+.++.++ .|.+||+.++.. +.+ ..+ .......|
T Consensus 311 ~~~~~~-------l~~~~~~~~~~~~sp---dg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l------~~~-~~~~~p~~ 372 (417)
T TIGR02800 311 GGEVRR-------LTFRGGYNASPSWSP---DGDLIAFVHREGGGFNIAVMDLDGGGE-RVL------TDT-GLDESPSF 372 (417)
T ss_pred CCCEEE-------eecCCCCccCeEECC---CCCEEEEEEccCCceEEEEEeCCCCCe-EEc------cCC-CCCCCceE
Confidence 654321 233445567889999 788888888776 789999987553 221 111 12235689
Q ss_pred CCCCCEE
Q 000709 323 APNLDIL 329 (1339)
Q Consensus 323 spdg~iL 329 (1339)
+|++..|
T Consensus 373 spdg~~l 379 (417)
T TIGR02800 373 APNGRMI 379 (417)
T ss_pred CCCCCEE
Confidence 9999855
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=7.5e-05 Score=88.91 Aligned_cols=320 Identities=13% Similarity=0.087 Sum_probs=178.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEe--ccccceeEeeccccCCCccccccCCceEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~v--s~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
..++..++|++|+++|.+ .++.++|++..++..+.+.... ..+.+ ++.+.+|.+-.--.. -..+..
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~---~~~~L~fSP~g~yL~T~e~~~i------~~~~~~-- 102 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVELK---KTYDLLFSPKGNYLLTWEPWAI------YGPKNA-- 102 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEeccc---eeeeeeeccccccccccccccc------ccCCCC--
Confidence 346788899999888876 6788999999888655544422 22222 366666654321100 000000
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEE
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
....+++|++.++ +.+.. ........ ++..|+.|.. +.+--..+-..+++....+ ......|...|..
T Consensus 103 ---~~pn~~v~~vet~-~~~s~---~q~k~Q~~-W~~qfs~dEs-l~arlv~nev~f~~~~~f~---~~~~kl~~~~i~~ 170 (566)
T KOG2315|consen 103 ---SNPNVLVYNVETG-VQRSQ---IQKKMQNG-WVPQFSIDES-LAARLVSNEVQFYDLGSFK---TIQHKLSVSGITM 170 (566)
T ss_pred ---CCCceeeeeeccc-eehhh---eehhhhcC-cccccccchh-hhhhhhcceEEEEecCCcc---ceeeeeeccceee
Confidence 1346789999884 33211 11111111 6888999875 3332233333355665532 2234677889999
Q ss_pred EEEeeccccCCCCEEEE-----EECCCcEEEEECCCCeE-----EEEEecCCCCCeeEEEEeeeCCCCCEEEEEe--CC-
Q 000709 170 MEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKL-----VRRYTGGHKGSISCLMTFMASSGEALLVSGG--SD- 236 (1339)
Q Consensus 170 vaf~P~s~Spdg~~Las-----Gs~DgtIrIWDl~t~~~-----i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS--~D- 236 (1339)
..++| .|....+++ ++.-+.+|||....... .++|. ..+.|. +.| ......+|+.++ -|
T Consensus 171 f~lSp---gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvq-m~W--N~~gt~LLvLastdVDk 242 (566)
T KOG2315|consen 171 LSLSP---GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQ-MKW--NKLGTALLVLASTDVDK 242 (566)
T ss_pred EEecC---CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc--ccceeE-EEe--ccCCceEEEEEEEeecC
Confidence 99965 344556655 33456799998762211 12221 122232 224 222222333333 23
Q ss_pred --------CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE--EEeCCCcEEEEECCCCeeEEEecC
Q 000709 237 --------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI--TIGADKTLAIWDTVSFKELRRIKP 306 (1339)
Q Consensus 237 --------gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La--Sgs~Dg~IrIWDl~t~~~l~~~~~ 306 (1339)
.++++.++....+.- .+ ...++|.++.|+| ++.-++ -|-.--++-|+|++ +..+..+
T Consensus 243 tn~SYYGEq~Lyll~t~g~s~~V------~L-~k~GPVhdv~W~~---s~~EF~VvyGfMPAkvtifnlr-~~~v~df-- 309 (566)
T KOG2315|consen 243 TNASYYGEQTLYLLATQGESVSV------PL-LKEGPVHDVTWSP---SGREFAVVYGFMPAKVTIFNLR-GKPVFDF-- 309 (566)
T ss_pred CCccccccceEEEEEecCceEEE------ec-CCCCCceEEEECC---CCCEEEEEEecccceEEEEcCC-CCEeEeC--
Confidence 357777777333221 12 2468999999999 564443 34567889999987 5555553
Q ss_pred CCcccccCCceeEEEeCCCCCEE-EEecCC-----eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecC
Q 000709 307 VPKLACHSVASWCHPRAPNLDIL-TCVKDS-----HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSL 380 (1339)
Q Consensus 307 ~~~l~~H~~~V~svafspdg~iL-s~s~Dg-----~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~ 380 (1339)
-.+.-.++-|+|.|.+| .+|.++ .|||+.+... +..+... .-+-+.|+|+
T Consensus 310 ------~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~---------------i~~~~a~---~tt~~eW~Pd 365 (566)
T KOG2315|consen 310 ------PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL---------------IAKFKAA---NTTVFEWSPD 365 (566)
T ss_pred ------CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh---------------ccccccC---CceEEEEcCC
Confidence 22333478899999966 455443 3899986421 2222111 3456899995
Q ss_pred CCcEEEEEEC------CCeEEEEecCCC
Q 000709 381 QPHLVATGTN------VGVIISEFDPRS 402 (1339)
Q Consensus 381 ~~~lLatGs~------DG~IlriWd~~~ 402 (1339)
+.++.|++. |+.+ +||++..
T Consensus 366 -Ge~flTATTaPRlrvdNg~-KiwhytG 391 (566)
T KOG2315|consen 366 -GEYFLTATTAPRLRVDNGI-KIWHYTG 391 (566)
T ss_pred -CcEEEEEeccccEEecCCe-EEEEecC
Confidence 444555543 4444 7888764
No 264
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.48 E-value=3.5e-05 Score=92.70 Aligned_cols=286 Identities=16% Similarity=0.082 Sum_probs=150.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCc---------cceEEeccccceeEeeccccCCCcc------------c
Q 000709 22 THPWLVTADASDHVSVWNWEHRQVIYELKAGGV---------DQRRLVGAKLEKLAEGELEHKGKPT------------E 80 (1339)
Q Consensus 22 dg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~---------~~i~~vs~d~~~Lasgs~d~~gk~~------------~ 80 (1339)
.+..++.++.+|.|.-+|..+|+.+.++..... +.+++...++...+.-.. +|+.. -
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~--tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAE--DGKELWRAKLSSEVLSPP 141 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECC--CCcEeeeeccCceeecCC
Confidence 356777777888888888888888776654321 112211233332222111 11110 0
Q ss_pred cccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~ 159 (1339)
.+.++.| -+...++.+..||..+++.+................+.... ++ .++.+..++.+ .+|..+++..-...
T Consensus 142 ~v~~~~v-~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~--~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 142 LVANGLV-VVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG--GVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred EEECCEE-EEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC--EEEEECCCCEEEEEEccCCCEeeeec
Confidence 1111221 12226788999998888665321100000000000111111 23 45556665555 66888875422111
Q ss_pred cc-cCC-C---CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000709 160 QE-LDN-K---SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1339)
Q Consensus 160 ~~-~h~-~---~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS 234 (1339)
.. ... . ....+.-.| .-.+..++.++.+|.++.||.++++.+.... .... ... ...+..++.++
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p---~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~~~-~~p-----~~~~~~vyv~~ 286 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDP---VVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--ASSY-QGP-----AVDDNRLYVTD 286 (377)
T ss_pred cccCCCCCchhhhhccCCcc---EEECCEEEEEEcCCEEEEEECCCCcEEEeec--cCCc-cCc-----eEeCCEEEEEC
Confidence 00 000 0 000010001 0135678888899999999999998766553 1111 111 12466788888
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
.||.|..+|..+++.+.+.. .+.+ ....+... .+..|++++.||.|++||..+++.+.+++ .+.
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~---~~~~--~~~ssp~i-----~g~~l~~~~~~G~l~~~d~~tG~~~~~~~------~~~ 350 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKND---ELKY--RQLTAPAV-----VGGYLVVGDFEGYLHWLSREDGSFVARLK------TDG 350 (377)
T ss_pred CCCeEEEEECCCCcEEEccc---cccC--CccccCEE-----ECCEEEEEeCCCEEEEEECCCCCEEEEEE------cCC
Confidence 99999999999987654310 1111 11122222 24588899999999999999999887742 233
Q ss_pred CceeEEEeCCCCCEEEEecCCeEEEc
Q 000709 315 VASWCHPRAPNLDILTCVKDSHIWAI 340 (1339)
Q Consensus 315 ~~V~svafspdg~iLs~s~Dg~LWDi 340 (1339)
..++.-....++.++.++.||+|+-+
T Consensus 351 ~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 351 SGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CccccCCEEECCEEEEEeCCceEEEe
Confidence 33333333345668888999987643
No 265
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.46 E-value=1.8e-06 Score=98.85 Aligned_cols=84 Identities=23% Similarity=0.251 Sum_probs=73.3
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
..+|-..++.|+| +||+++|+++..|..||+-....-..+..+.-||+..|..++. -++..|+|||.|++|
T Consensus 147 ~lGhvSml~dVav-----S~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl----~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 147 ILGHVSMLLDVAV-----SPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL----TDNYLLLSGSGDKTL 217 (390)
T ss_pred hhhhhhhhheeee-----cCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeee----ccCceeeecCCCCcE
Confidence 4688999999999 8899999999999999998887767777776699999999972 255679999999999
Q ss_pred EEEeCCCCCccce
Q 000709 240 ILWSADHGQDSRE 252 (1339)
Q Consensus 240 rVWDl~tg~~~~~ 252 (1339)
++||+.+|++++.
T Consensus 218 r~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 218 RLWDITSGKLLDT 230 (390)
T ss_pred EEEecccCCcccc
Confidence 9999999998754
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=2.7e-05 Score=95.45 Aligned_cols=197 Identities=20% Similarity=0.158 Sum_probs=118.8
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 96 ~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.|.++|....... ....+ ...+.+..|+|||+.++.+...++ +.++|+.+++.+.+... ...+....|
T Consensus 180 ~l~~~d~~g~~~~-----~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~ 250 (430)
T PRK00178 180 TLQRSDYDGARAV-----TLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAW 250 (430)
T ss_pred EEEEECCCCCCce-----EEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEE
Confidence 4666777654321 12222 456788999999984444443322 33568888765544322 234456788
Q ss_pred eeccccCCCCEEEE-EECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCC
Q 000709 173 LSRSAVGDVPLVAF-GSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADH 246 (1339)
Q Consensus 173 ~P~s~Spdg~~Las-Gs~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dg--tVrVWDl~t 246 (1339)
+|||+.|+. .+.+| .|++||+.+++.. .+. .+........ ++|+|+.|+..+. ++ .|.+||+.+
T Consensus 251 -----SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt-~~~~~~~~~~---~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 251 -----SPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT-NHPAIDTEPF---WGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred -----CCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc-cCCCCcCCeE---ECCCCCEEEEEECCCCCceEEEEECCC
Confidence 789998874 44454 5888899887654 343 4444455554 6899988776654 33 577778877
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeC-CC--cEEEEECCCCeeEEEecCCCcccccCCceeEEEeC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-Dg--~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1339)
++..+ + +..+ .......|+| +++.|+..+. ++ .|.+||+.+++. +.+. +........|+
T Consensus 321 g~~~~-l----t~~~--~~~~~~~~Sp---dg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt-------~~~~~~~p~~s 382 (430)
T PRK00178 321 GRAER-V----TFVG--NYNARPRLSA---DGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT-------DTSLDESPSVA 382 (430)
T ss_pred CCEEE-e----ecCC--CCccceEECC---CCCEEEEEEccCCceEEEEEECCCCCE-EEcc-------CCCCCCCceEC
Confidence 65322 1 1122 2234568999 7788876664 33 588899988764 3321 11111246899
Q ss_pred CCCCEE
Q 000709 324 PNLDIL 329 (1339)
Q Consensus 324 pdg~iL 329 (1339)
|||+.+
T Consensus 383 pdg~~i 388 (430)
T PRK00178 383 PNGTML 388 (430)
T ss_pred CCCCEE
Confidence 999966
No 267
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=3.1e-05 Score=94.77 Aligned_cols=202 Identities=17% Similarity=0.092 Sum_probs=117.0
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeE--EEEEecCc--EE-EEEecCCceeeccccccCCCCeEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHF--LVICCVNK--AI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~l--Lasgs~dg--~I-~wD~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
..|.+.|....... .+... .....+-.|+|||+.+ +.+...++ .| +.++.+++.+.+... ......
T Consensus 165 ~~l~~~d~dG~~~~-----~lt~~-~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~ 235 (428)
T PRK01029 165 GELWSVDYDGQNLR-----PLTQE-HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLM 235 (428)
T ss_pred ceEEEEcCCCCCce-----EcccC-CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccc
Confidence 35666666655332 11111 3345677999999752 22333332 22 348877765554332 233445
Q ss_pred EEEeeccccCCCCEEEEEEC-----CCcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-CCCcEEE
Q 000709 170 MEFLSRSAVGDVPLVAFGSS-----DGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLIL 241 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~-----DgtIrIWDl~t~--~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS-~DgtVrV 241 (1339)
..| ||||+.|+..++ +..+.+|++..+ .....+..++.+...... ++|||+.|+..+ .+|...+
T Consensus 236 p~w-----SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~---wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 236 PTF-----SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS---FSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred eEE-----CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeE---ECCCCCEEEEEECCCCCceE
Confidence 678 889999887653 223444776642 122333323333345555 699999877665 4676666
Q ss_pred EeC--CC-CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCC---CcEEEEECCCCeeEEEecCCCcccccCC
Q 000709 242 WSA--DH-GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGAD---KTLAIWDTVSFKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 242 WDl--~t-g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~D---g~IrIWDl~t~~~l~~~~~~~~l~~H~~ 315 (1339)
|.+ .. +.... .+..+...+....|+| |++.|+..+.+ ..|.+||+.+++.... .....
T Consensus 308 y~~~~~~~g~~~~------~lt~~~~~~~~p~wSP---DG~~Laf~~~~~g~~~I~v~dl~~g~~~~L-------t~~~~ 371 (428)
T PRK01029 308 YIMQIDPEGQSPR------LLTKKYRNSSCPAWSP---DGKKIAFCSVIKGVRQICVYDLATGRDYQL-------TTSPE 371 (428)
T ss_pred EEEECcccccceE------EeccCCCCccceeECC---CCCEEEEEEcCCCCcEEEEEECCCCCeEEc-------cCCCC
Confidence 644 32 11111 1333445667889999 78888766543 4799999998875432 22223
Q ss_pred ceeEEEeCCCCCEE
Q 000709 316 ASWCHPRAPNLDIL 329 (1339)
Q Consensus 316 ~V~svafspdg~iL 329 (1339)
.+....|+|||+.|
T Consensus 372 ~~~~p~wSpDG~~L 385 (428)
T PRK01029 372 NKESPSWAIDSLHL 385 (428)
T ss_pred CccceEECCCCCEE
Confidence 45678999999855
No 268
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=9.5e-05 Score=87.53 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=72.0
Q ss_pred eeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC-----------CCcE
Q 000709 222 MASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-----------DKTL 290 (1339)
Q Consensus 222 ~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-----------Dg~I 290 (1339)
.+||.|.+|+|-..- -|.+|--.+-..++. -.|. .|.-+.||| ...||+|-|. ...+
T Consensus 217 ~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~R-------F~Hp-~Vq~idfSP---~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 217 RWSPKGTYLVTFHKQ-GIALWGGESFDRIQR-------FYHP-GVQFIDFSP---NEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred EecCCceEEEEEecc-ceeeecCccHHHHHh-------ccCC-CceeeecCC---ccceEEEecCCccccCcccCCCceE
Confidence 369999999987655 478896554443333 2354 388899999 7899998763 2579
Q ss_pred EEEECCCCeeEEEecCCCcccccCCcee-EEEeCCCCCEEEE-ecCC-eEEEcc
Q 000709 291 AIWDTVSFKELRRIKPVPKLACHSVASW-CHPRAPNLDILTC-VKDS-HIWAIE 341 (1339)
Q Consensus 291 rIWDl~t~~~l~~~~~~~~l~~H~~~V~-svafspdg~iLs~-s~Dg-~LWDi~ 341 (1339)
+|||+.+|...+.|... .+ ...+| -..||.|++++++ ..|+ .|++..
T Consensus 285 ~IWDI~tG~lkrsF~~~---~~-~~~~WP~frWS~DdKy~Arm~~~sisIyEtp 334 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVI---KS-PYLKWPIFRWSHDDKYFARMTGNSISIYETP 334 (698)
T ss_pred EEEEccccchhcceecc---CC-CccccceEEeccCCceeEEeccceEEEEecC
Confidence 99999999988887543 11 22233 5779999998875 3344 367655
No 269
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=4.2e-05 Score=94.28 Aligned_cols=197 Identities=16% Similarity=0.128 Sum_probs=114.9
Q ss_pred eEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 96 DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 96 ~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
.+.++|....... .... ....+.+..|+|||+.++.+...++ +.++|..+++...+... ........|
T Consensus 199 ~l~i~d~dG~~~~-----~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~w 269 (448)
T PRK04792 199 QLMIADYDGYNEQ-----MLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRF 269 (448)
T ss_pred EEEEEeCCCCCce-----Eeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeE
Confidence 5666676554321 1111 1456778999999985544444333 33558887765443222 223346788
Q ss_pred eeccccCCCCEEEE-EECCCc--EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCC
Q 000709 173 LSRSAVGDVPLVAF-GSSDGV--IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADH 246 (1339)
Q Consensus 173 ~P~s~Spdg~~Las-Gs~Dgt--IrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dg--tVrVWDl~t 246 (1339)
+|||+.|+. .+.+|. |++||+.+++.. .+. .+........ ++|+++.|+..+. ++ .|.++|+.+
T Consensus 270 -----SPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~---wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 270 -----SPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPS---WHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred -----CCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceE---ECCCCCEEEEEECCCCCceEEEEECCC
Confidence 889998765 455664 778888877653 333 3444555565 6899998876554 34 466667776
Q ss_pred CCccceecccccccccccceEEEEeeccCCCCCEEEEEeC-CC--cEEEEECCCCeeEEEecCCCcccccCCceeEEEeC
Q 000709 247 GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA-DK--TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1339)
Q Consensus 247 g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~-Dg--~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1339)
++... + +..++ ......|+| ++++|+..+. ++ .|.++|+.+++.. .+ .... ......|+
T Consensus 340 g~~~~-L----t~~g~--~~~~~~~Sp---DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~l------t~~~-~d~~ps~s 401 (448)
T PRK04792 340 GKVSR-L----TFEGE--QNLGGSITP---DGRSMIMVNRTNGKFNIARQDLETGAMQ-VL------TSTR-LDESPSVA 401 (448)
T ss_pred CCEEE-E----ecCCC--CCcCeeECC---CCCEEEEEEecCCceEEEEEECCCCCeE-Ec------cCCC-CCCCceEC
Confidence 65321 1 12222 234568999 7777776554 44 4555788777642 22 1111 11245799
Q ss_pred CCCCEE
Q 000709 324 PNLDIL 329 (1339)
Q Consensus 324 pdg~iL 329 (1339)
|||+.|
T Consensus 402 pdG~~I 407 (448)
T PRK04792 402 PNGTMV 407 (448)
T ss_pred CCCCEE
Confidence 999955
No 270
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=114.31 Aligned_cols=196 Identities=17% Similarity=0.246 Sum_probs=148.2
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
.+-..|.++.-| |...+.++|+.||.|++|.+..++.+..+..+....|+.+. |+..|+.+..+..||.+.+
T Consensus 2206 ~~v~~v~r~~sH-----p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~---f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2206 HPVENVRRMTSH-----PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSR---FNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred cccCceeeecCC-----CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhh---hcccCCceeeeccCCceee
Confidence 345677888774 56789999999999999999999888888755567888776 8889999999999999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEe---CCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG---ADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs---~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
|.+... +....+.|+.....+.|-. ..+++++ +++.+.+||..-.....- + ..+|...++
T Consensus 2278 ~q~~pk-------~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~---v--~~~H~~gaT 2340 (2439)
T KOG1064|consen 2278 WQASPK-------PYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSL---V--HTCHDGGAT 2340 (2439)
T ss_pred cccCCc-------ceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccce---e--eeecCCCce
Confidence 998722 3445688999888888864 5677665 578999999753221111 1 268999999
Q ss_pred EEEeCCCCC-EEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 319 CHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 319 svafspdg~-iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
++++-|..+ +++||.+|. |||++.+.. .+.+. . ++ ...++.+|+..|.+
T Consensus 2341 ~l~~~P~~qllisggr~G~v~l~D~rqrql---------------~h~~~------~----~~--~~~~f~~~ss~g~i- 2392 (2439)
T KOG1064|consen 2341 VLAYAPKHQLLISGGRKGEVCLFDIRQRQL---------------RHTFQ------A----LD--TREYFVTGSSEGNI- 2392 (2439)
T ss_pred EEEEcCcceEEEecCCcCcEEEeehHHHHH---------------HHHhh------h----hh--hhheeeccCcccce-
Confidence 999999988 559999996 899986522 11111 1 22 34569999999997
Q ss_pred EEecCCCCCCccccC
Q 000709 396 SEFDPRSLPAVAPLP 410 (1339)
Q Consensus 396 riWd~~~~p~i~~~~ 410 (1339)
+||+......+.+++
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999998776666554
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=97.93 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=119.9
Q ss_pred EEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecC
Q 000709 136 LVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW-----KLVRRYTGG 210 (1339)
Q Consensus 136 Lasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~-----~~i~~l~~g 210 (1339)
+.+|.+.+....|+.++.... -.....|.++.| ...++++..|+.+|.|..+|++.+ .+...+ -
T Consensus 228 fs~G~sqqv~L~nvetg~~qs----f~sksDVfAlQf-----~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--y 296 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS----FQSKSDVFALQF-----AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--Y 296 (425)
T ss_pred ecccccceeEEEEeecccccc----cccchhHHHHHh-----cccCCeeEecccCCcEEEEEeeecccCCCcceEEE--E
Confidence 456666666677998875432 225667888888 456889999999999999999854 455666 4
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcE
Q 000709 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTL 290 (1339)
Q Consensus 211 H~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~I 290 (1339)
|...|+|+.- ..-++.+|++.+.+|+|++||.+.-++-. ...++.||-..-.-+-++- .+....++++++|...
T Consensus 297 h~Ssvtslq~--Lq~s~q~LmaS~M~gkikLyD~R~~K~~~---~V~qYeGHvN~~a~l~~~v-~~eeg~I~s~GdDcyt 370 (425)
T KOG2695|consen 297 HDSSVTSLQI--LQFSQQKLMASDMTGKIKLYDLRATKCKK---SVMQYEGHVNLSAYLPAHV-KEEEGSIFSVGDDCYT 370 (425)
T ss_pred cCcchhhhhh--hccccceEeeccCcCceeEeeehhhhccc---ceeeeeccccccccccccc-ccccceEEEccCeeEE
Confidence 9999999972 34477899999999999999999876632 1334678854433333332 1255688899999999
Q ss_pred EEEECCCCeeEEEecCCCcccccCCceeEEEeC
Q 000709 291 AIWDTVSFKELRRIKPVPKLACHSVASWCHPRA 323 (1339)
Q Consensus 291 rIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs 323 (1339)
|||.+.++..+.++... .......+++++|.
T Consensus 371 RiWsl~~ghLl~tipf~--~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFP--YSASEVDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCC--Cccccccccceehh
Confidence 99999999988875322 12223345566654
No 272
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.35 E-value=0.00018 Score=84.88 Aligned_cols=333 Identities=11% Similarity=0.005 Sum_probs=186.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEE--eccccceeEeeccccCCCccccccCCce
Q 000709 10 TNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRL--VGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 10 Hs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~--vs~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
-.-.+..+.|||.|.+|++.. -..|.+|+...+..+..+. + ..+.. ++|.+.+|.+-+..+...+-.-. .++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~-~--~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~--sp~ 104 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFR-H--PDVKYLDFSPNEKYLVTWSREPIIEPEIEI--SPF 104 (561)
T ss_pred cCcchhheeecCcchheehhh-ccceEEccccchhheeeee-c--CCceecccCcccceeeeeccCCccChhhcc--CCc
Confidence 345688899999999999874 4568999988877666665 2 23343 34899999887655432111000 110
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCCee-eeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCC
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFA-SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKS 166 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~-slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~ 166 (1339)
+ ++..+.+||+.++..+........ ....+ -+.|+-+.. +++--..+...+.++ +.+....+........
T Consensus 105 ~----~~n~~~vwd~~sg~iv~sf~~~~q---~~~~Wp~~k~s~~D~-y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~g 175 (561)
T COG5354 105 T----SKNNVFVWDIASGMIVFSFNGISQ---PYLGWPVLKFSIDDK-YVARVVGSSLYIHEI-TDNIEEHPFKNLRPVG 175 (561)
T ss_pred c----ccCceeEEeccCceeEeeccccCC---cccccceeeeeecch-hhhhhccCeEEEEec-CCccccCchhhccccc
Confidence 0 355899999999977632111110 10122 466777776 444334444445564 4443333222333567
Q ss_pred eEEEEEeeccccCCCCEEEE-----EECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-------
Q 000709 167 LVCMEFLSRSAVGDVPLVAF-----GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG------- 234 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~Las-----Gs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS------- 234 (1339)
|....|+|.. ++..|+. +..++++++|.+..+..+.+-. -..-.-..+. +.+.|++|+.--
T Consensus 176 i~dFsisP~~---n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLk---W~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 176 ILDFSISPEG---NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLK---WQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred eeeEEecCCC---CCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEE---EecCCceEEEEEEEeeecc
Confidence 8888886532 2333443 4567899999987655543321 1112222333 345555444211
Q ss_pred ----CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEE--EEEeCCCcEEEEECCCCeeEEEecCCC
Q 000709 235 ----SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL--ITIGADKTLAIWDTVSFKELRRIKPVP 308 (1339)
Q Consensus 235 ----~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~L--aSgs~Dg~IrIWDl~t~~~l~~~~~~~ 308 (1339)
....+.++++....+ .. ..+..++|...+|.| .++.+ ++|-.+-.+.++|++.. ....+
T Consensus 249 KsyfgesnLyl~~~~e~~i-~V------~~~~~~pVhdf~W~p---~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~---- 313 (561)
T COG5354 249 KSYFGESNLYLLRITERSI-PV------EKDLKDPVHDFTWEP---LSSRFAVISGYMPASVSVFDLRGN-LRFYF---- 313 (561)
T ss_pred cceeccceEEEEeeccccc-ce------eccccccceeeeecc---cCCceeEEecccccceeecccccc-eEEec----
Confidence 124567777763322 11 125578899999999 44444 44558999999999865 33322
Q ss_pred cccccCCceeEEEeCCCCCE-EEEecCCe-----EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCC
Q 000709 309 KLACHSVASWCHPRAPNLDI-LTCVKDSH-----IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP 382 (1339)
Q Consensus 309 ~l~~H~~~V~svafspdg~i-Ls~s~Dg~-----LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~ 382 (1339)
-...-..+.|+|.+++ |.+|-|+. +||....- .....+.+. ...-+.|+|++.
T Consensus 314 ----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf--------------~~~~~~~~~---n~s~~~wspd~q 372 (561)
T COG5354 314 ----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF--------------KVAGAFNGL---NTSYCDWSPDGQ 372 (561)
T ss_pred ----CCcccccccccCcccEEEEecCCccccceEEeccCCce--------------EEEEEeecC---CceEeeccCCce
Confidence 1122235779999884 46676652 78876431 111122222 244567999544
Q ss_pred cEEEEEE------CCCeEEEEecCCC
Q 000709 383 HLVATGT------NVGVIISEFDPRS 402 (1339)
Q Consensus 383 ~lLatGs------~DG~IlriWd~~~ 402 (1339)
+ +.+.. .|..| .+||+..
T Consensus 373 F-~~~~~ts~k~~~Dn~i-~l~~v~g 396 (561)
T COG5354 373 F-YDTDTTSEKLRVDNSI-KLWDVYG 396 (561)
T ss_pred E-EEecCCCcccccCcce-EEEEecC
Confidence 3 44432 24555 6787664
No 273
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00013 Score=89.35 Aligned_cols=197 Identities=14% Similarity=0.057 Sum_probs=113.3
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc---E-E-EEEecCC---ceeeccccccCCCC
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---A-I-FLDLVTM---RGRDIPKQELDNKS 166 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg---~-I-~wD~~t~---~~~~v~~~~~h~~~ 166 (1339)
..|.+.++.+++... ............|+|||+.++.+...++ . + .|+...+ ..+.+ ...+...
T Consensus 211 ~~I~~~~l~~g~~~~------lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~ 282 (428)
T PRK01029 211 PKIFLGSLENPAGKK------ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGT 282 (428)
T ss_pred ceEEEEECCCCCceE------eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCC
Confidence 356667777664321 1111333456789999985555543322 1 2 2455442 21121 1112233
Q ss_pred eEEEEEeeccccCCCCEEEEEE-CCCcEEEE--ECCC-CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcE
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGS-SDGVIRVL--SMIS-WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLL 239 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs-~DgtIrIW--Dl~t-~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D---gtV 239 (1339)
.....| +|||+.|+..+ .+|...|| ++.. +.....+. .+...+.... ++|+|+.|+..+.+ ..|
T Consensus 283 ~~~p~w-----SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~---wSPDG~~Laf~~~~~g~~~I 353 (428)
T PRK01029 283 QGNPSF-----SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPA---WSPDGKKIAFCSVIKGVRQI 353 (428)
T ss_pred cCCeEE-----CCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCcccee---ECCCCCEEEEEEcCCCCcEE
Confidence 456788 88999888776 45655555 4432 23334443 4445666666 69999988876653 469
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC---CCcEEEEECCCCeeEEEecCCCcccccCCc
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~---Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~ 316 (1339)
.+||+.+++... +......+....|+| |++.|+..+. +..|.+||+.+++.... ......
T Consensus 354 ~v~dl~~g~~~~-------Lt~~~~~~~~p~wSp---DG~~L~f~~~~~g~~~L~~vdl~~g~~~~L-------t~~~g~ 416 (428)
T PRK01029 354 CVYDLATGRDYQ-------LTTSPENKESPSWAI---DSLHLVYSAGNSNESELYLISLITKKTRKI-------VIGSGE 416 (428)
T ss_pred EEEECCCCCeEE-------ccCCCCCccceEECC---CCCEEEEEECCCCCceEEEEECCCCCEEEe-------ecCCCc
Confidence 999998876422 222233567789999 7777764432 35688889987765433 122233
Q ss_pred eeEEEeCCC
Q 000709 317 SWCHPRAPN 325 (1339)
Q Consensus 317 V~svafspd 325 (1339)
+...+|+|.
T Consensus 417 ~~~p~Ws~~ 425 (428)
T PRK01029 417 KRFPSWGAF 425 (428)
T ss_pred ccCceecCC
Confidence 445667664
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.34 E-value=6.9e-06 Score=92.30 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=68.5
Q ss_pred eccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000709 156 DIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1339)
Q Consensus 156 ~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~ 235 (1339)
.+.....|.+.+.|+.| .+....+.+|..|..+.+||+-..+-+.....+|.+.|..+. .-+--..+++++.
T Consensus 189 ~i~~~~~h~~~~~~l~W-----d~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~---~~~~t~~l~S~~e 260 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKW-----DPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS---YAQHTRQLISCGE 260 (404)
T ss_pred eEEEEcCcccceEEEEE-----cCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh---hhhhheeeeeccC
Confidence 35567889999999999 677889999999999999999866555444459999999985 4455678999999
Q ss_pred CCcEEEEeCC
Q 000709 236 DGLLILWSAD 245 (1339)
Q Consensus 236 DgtVrVWDl~ 245 (1339)
||.|.+||++
T Consensus 261 dg~i~~w~mn 270 (404)
T KOG1409|consen 261 DGGIVVWNMN 270 (404)
T ss_pred CCeEEEEecc
Confidence 9999999986
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.33 E-value=1.8e-06 Score=103.98 Aligned_cols=259 Identities=14% Similarity=0.176 Sum_probs=169.8
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccC--CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD--NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h--~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
...+..+..+|.|+ =++.++.-|.+++|+...-. .+....| .-.|-.+.|+|. +.-.+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~gr-di~lAsr~gl~i~dld~p~~--ppr~l~h~tpw~vad~qws~h---~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGR-DIVLASRQGLYIIDLDDPFT--PPRWLHHITPWQVADVQWSPH---PAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccc-hhhhhhhcCeEEEeccCCCC--CceeeeccCcchhcceecccC---CCCceeEEecCcchhhhhh
Confidence 45677788899997 67788888888887654321 1122233 335777889763 3344444444555566899
Q ss_pred CC--CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC
Q 000709 198 MI--SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM 275 (1339)
Q Consensus 198 l~--t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~ 275 (1339)
+. +.+.+.-+..||...|+.+.| .......+++++.|-.|..||+++... +.+....-...-..|.|+-
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~--~~q~pdVlatcsvdt~vh~wd~rSp~~-----p~ys~~~w~s~asqVkwny-- 168 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINF--NPQHPDVLATCSVDTYVHAWDMRSPHR-----PFYSTSSWRSAASQVKWNY-- 168 (1081)
T ss_pred hhcCCccceEEEEecCccceecccc--CCCCCcceeeccccccceeeeccCCCc-----ceeeeecccccCceeeecc--
Confidence 85 334455555699999999984 445567999999999999999997652 2222333334456788887
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCee-EEEecCCCcccccCCceeEEEeCCC--CCEEEEecCCe--EEEccCCcccc---
Q 000709 276 GGSPQLITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPN--LDILTCVKDSH--IWAIEHPTYSA--- 347 (1339)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspd--g~iLs~s~Dg~--LWDi~t~~~~~--- 347 (1339)
....+...+..+.|++||.+.|.. +.. +.+|...|..+.|..- +.+++++.|++ .||....+...
T Consensus 169 -k~p~vlasshg~~i~vwd~r~gs~pl~s------~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~ 241 (1081)
T KOG0309|consen 169 -KDPNVLASSHGNDIFVWDLRKGSTPLCS------LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241 (1081)
T ss_pred -cCcchhhhccCCceEEEeccCCCcceEE------ecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccccccee
Confidence 344566667888999999997763 333 5678888888888764 55778999997 68876542210
Q ss_pred cc----------cCcc---------------------------ccCCCCCCeEEccCCcccEEEEEEecC---------C
Q 000709 348 LT----------RPLC---------------------------ELSSLVPPQVLAHHKKLRVYCMVAHSL---------Q 381 (1339)
Q Consensus 348 ~~----------~~l~---------------------------~~~~~~~~~tl~~~~~~~I~~la~sp~---------~ 381 (1339)
.. .++. ......++.+|.+|.+ .|....|-.. .
T Consensus 242 vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 242 VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch-HHHHHhhhhcccccCCCCcc
Confidence 00 0000 0124556777778876 5544444321 3
Q ss_pred CcEEEEEECCCeEEEEecCCC
Q 000709 382 PHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 382 ~~lLatGs~DG~IlriWd~~~ 402 (1339)
.+.|+|.+.|..+ |+|-+..
T Consensus 321 dfQLVTWSkD~~l-rlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTL-RLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCce-EeeeccH
Confidence 4679999999996 8997764
No 276
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.33 E-value=0.00038 Score=83.72 Aligned_cols=215 Identities=13% Similarity=0.022 Sum_probs=114.0
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcE-EEEEecCCceeeccccccCCCCe----
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKA-IFLDLVTMRGRDIPKQELDNKSL---- 167 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~-I~wD~~t~~~~~v~~~~~h~~~V---- 167 (1339)
.++.+..+|..+++.+.... . ...+.+.-...++ .++.++.++. ..||..+++..-. .......+
T Consensus 113 ~~g~l~ald~~tG~~~W~~~---~---~~~~~~~p~v~~~--~v~v~~~~g~l~a~d~~tG~~~W~--~~~~~~~~~~~~ 182 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAK---L---SSEVLSPPLVANG--LVVVRTNDGRLTALDAATGERLWT--YSRVTPALTLRG 182 (377)
T ss_pred CCCEEEEEECCCCcEeeeec---c---CceeecCCEEECC--EEEEECCCCeEEEEEcCCCceeeE--EccCCCceeecC
Confidence 57888888988877653111 1 1111111111133 3444444554 4778888764321 11111110
Q ss_pred -EEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---CeeEEEEeeeC--CCCCEEEEEeCCCcEEE
Q 000709 168 -VCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG---SISCLMTFMAS--SGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 168 -~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~---~V~sl~wf~~s--pdg~~LaSgS~DgtVrV 241 (1339)
.+... .+..++.++.++.+..+|.++++.+......... .+..+..+..+ -.+..++.++.+|.+..
T Consensus 183 ~~sp~~-------~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a 255 (377)
T TIGR03300 183 SASPVI-------ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAA 255 (377)
T ss_pred CCCCEE-------ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEE
Confidence 11112 1346788888999999999998776543211110 00000000001 13557888889999999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEE
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
||..+|+.+.... ... ...... .+..++.++.||.|..+|..+++.+..... +... ...+..
T Consensus 256 ~d~~tG~~~W~~~----~~~----~~~p~~-----~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~---~~~~--~~ssp~ 317 (377)
T TIGR03300 256 LDLRSGRVLWKRD----ASS----YQGPAV-----DDNRLYVTDADGVVVALDRRSGSELWKNDE---LKYR--QLTAPA 317 (377)
T ss_pred EECCCCcEEEeec----cCC----ccCceE-----eCCEEEEECCCCeEEEEECCCCcEEEcccc---ccCC--ccccCE
Confidence 9999987654321 111 111222 345778888999999999999987655311 1111 111111
Q ss_pred eCCCCCEEEEecCCeE--EEccCC
Q 000709 322 RAPNLDILTCVKDSHI--WAIEHP 343 (1339)
Q Consensus 322 fspdg~iLs~s~Dg~L--WDi~t~ 343 (1339)
. -++.+++++.+|.| ||..++
T Consensus 318 i-~g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 318 V-VGGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred E-ECCEEEEEeCCCEEEEEECCCC
Confidence 2 23456677888874 565554
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.32 E-value=0.00019 Score=96.61 Aligned_cols=167 Identities=9% Similarity=-0.033 Sum_probs=107.0
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecc------ccc------cCCCCeEEEEEeeccccCCCCE-EEEEE
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP------KQE------LDNKSLVCMEFLSRSAVGDVPL-VAFGS 188 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~------~~~------~h~~~V~~vaf~P~s~Spdg~~-LasGs 188 (1339)
-+.++|+|++..++++.+.++.| +||..++...... ... ........|+| +|++.+ +++-+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIav-----spdG~~LYVADs 759 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISL-----SPDLKELYIADS 759 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEE-----eCCCCEEEEEEC
Confidence 35789999554477777777766 5687665432110 000 01234667888 678874 45556
Q ss_pred CCCcEEEEECCCCeEEEEEe-----------cC-C--------CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 189 SDGVIRVLSMISWKLVRRYT-----------GG-H--------KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 189 ~DgtIrIWDl~t~~~i~~l~-----------~g-H--------~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
.++.|++||+.++......- -+ + -..-.+++ ++++|+++++-+.+++|++||..++.
T Consensus 760 ~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gva---vd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 760 ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVL---CAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceee---EeCCCcEEEEECCCCEEEEEECCCCe
Confidence 77999999998764321110 00 0 01123554 67889999999999999999998765
Q ss_pred ccceeccc-------ccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee
Q 000709 249 DSRELVPK-------LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1339)
Q Consensus 249 ~~~~~~~~-------~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1339)
.......- ....++-.....+++++ +++++++-+.+++|++||+.+++.
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~---dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGE---NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeC---CCCEEEEECCCCEEEEEECCCCcc
Confidence 43211000 00122234578899998 788999999999999999998764
No 278
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=0.0013 Score=75.39 Aligned_cols=183 Identities=10% Similarity=0.058 Sum_probs=115.5
Q ss_pred cCcEEEEEec--CCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CCcEEEEECCC--CeEE--EEEecCC
Q 000709 141 VNKAIFLDLV--TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMIS--WKLV--RRYTGGH 211 (1339)
Q Consensus 141 ~dg~I~wD~~--t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---DgtIrIWDl~t--~~~i--~~l~~gH 211 (1339)
..++.+|++. +++.. ......+...++-++| +++++.|.++.. +|.|--|.+.. |+.. .... .-
T Consensus 15 s~gI~v~~ld~~~g~l~-~~~~v~~~~nptyl~~-----~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~-~~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-LLQLVAELGNPTYLAV-----NPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT-LP 87 (346)
T ss_pred CCceEEEEEeCcccccc-hhhhccccCCCceEEE-----CCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-cC
Confidence 5567788555 44332 2233456778888999 778988888864 46777777653 5432 2211 11
Q ss_pred CCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCCCCCccceecccccccccccc----------eEEEEeeccCCCCCE
Q 000709 212 KGSISCLMTFMASSGEALLVSGGS-DGLLILWSADHGQDSRELVPKLSLKAHDGG----------VVAVELSRVMGGSPQ 280 (1339)
Q Consensus 212 ~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~----------V~svafsp~~~dg~~ 280 (1339)
..+-..++ +++++++++++.. -|.|.++-++....+.. ...+..|.+. +.+..+.| ++++
T Consensus 88 g~~p~yvs---vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP---~~~~ 158 (346)
T COG2706 88 GSPPCYVS---VDEDGRFVFVANYHSGSVSVYPLQADGSLQP---VVQVVKHTGSGPHERQESPHVHSANFTP---DGRY 158 (346)
T ss_pred CCCCeEEE---ECCCCCEEEEEEccCceEEEEEcccCCcccc---ceeeeecCCCCCCccccCCccceeeeCC---CCCE
Confidence 22224554 7999999998875 58899999976433221 1122334444 88889999 8888
Q ss_pred EEEEeC-CCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE--EEecCCe--EEEccC
Q 000709 281 LITIGA-DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL--TCVKDSH--IWAIEH 342 (1339)
Q Consensus 281 LaSgs~-Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL--s~s~Dg~--LWDi~t 342 (1339)
|++..- --+|.+|++..|+.... .+. .+ .-...-+.+.|+|+++++ .+=-+++ +|.++.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~-~~~-~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPA-DPA-EV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred EEEeecCCceEEEEEcccCccccc-ccc-cc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 888763 45789999997764322 111 11 223345689999999965 4445565 688875
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.30 E-value=5e-06 Score=95.36 Aligned_cols=161 Identities=18% Similarity=0.151 Sum_probs=107.6
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE-EEEecCCce--eeccccccCCCCeEEEEEeeccccCCCCEEEEE---ECCCcEEEE
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFG---SSDGVIRVL 196 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I-~wD~~t~~~--~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasG---s~DgtIrIW 196 (1339)
...+.+++.++ +++++..+... ++++..... +.+.... -....+.+.| -.+...+..+ ++...+.+|
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~-----~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISF-----IREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeee-----eeccceEEEEeecCCceeeeee
Confidence 34455677777 66666555554 555544321 1111111 1222233333 1223333333 345566666
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCC
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
....+.+...+ ||-.-++.++ +++|+++|+++..|..||+-....-..+..| ..||+.-|..++.-+
T Consensus 138 s~~~~~~~~~l--GhvSml~dVa---vS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-----clGH~eFVS~isl~~--- 204 (390)
T KOG3914|consen 138 SADSGRCEPIL--GHVSMLLDVA---VSPDDQFIITADRDEKIRVSRYPATFVIESF-----CLGHKEFVSTISLTD--- 204 (390)
T ss_pred cccccCcchhh--hhhhhhheee---ecCCCCEEEEecCCceEEEEecCcccchhhh-----ccccHhheeeeeecc---
Confidence 66555544333 9999999997 7999999999999999999888766555543 578999999999986
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 000709 277 GSPQLITIGADKTLAIWDTVSFKELRRI 304 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1339)
+..|+|+|.|++|++||+.+|++++++
T Consensus 205 -~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 -NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -CceeeecCCCCcEEEEecccCCccccc
Confidence 567999999999999999999988764
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=0.00017 Score=86.04 Aligned_cols=261 Identities=15% Similarity=0.145 Sum_probs=149.4
Q ss_pred CEEEEEEcCCCCEEEEE-----eCC-----CeEEEEECCCCcEEEEEeccCcc-ceEEeccccc---eeEeec-----cc
Q 000709 13 KIVKIQLHPTHPWLVTA-----DAS-----DHVSVWNWEHRQVIYELKAGGVD-QRRLVGAKLE---KLAEGE-----LE 73 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSg-----s~D-----GtIrIWDl~tg~~l~~~~~~~~~-~i~~vs~d~~---~Lasgs-----~d 73 (1339)
.++++.|||-|.+|.|= ..+ -.+++|+++++.....++..... +....+.|.. ++++.+ .+
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLG 154 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecC
Confidence 68899999999998862 122 35779999997666555533222 1111111111 011100 00
Q ss_pred cCCCccccccCC-----------ceEEEEE-------cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeE
Q 000709 74 HKGKPTEAMRGG-----------SVKQVNF-------YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHF 135 (1339)
Q Consensus 74 ~~gk~~~~l~~g-----------~V~sVaF-------~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~l 135 (1339)
........++.. .-..|++ ....+|+|.+.............. ....=..+.|++.|..+
T Consensus 155 ~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~L 232 (566)
T KOG2315|consen 155 SFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTAL 232 (566)
T ss_pred CccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--cccceeEEEeccCCceE
Confidence 000111111111 2233333 455788888763322110000000 01112347788888766
Q ss_pred EEEEecC--c---------EE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEE--EECCCcEEEEECCCC
Q 000709 136 LVICCVN--K---------AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAF--GSSDGVIRVLSMISW 201 (1339)
Q Consensus 136 Lasgs~d--g---------~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~Las--Gs~DgtIrIWDl~t~ 201 (1339)
|+..+.| . .+ .++.....+ . ..-...++|.++.| +++++-+++ |-.=..+.|||++ +
T Consensus 233 LvLastdVDktn~SYYGEq~Lyll~t~g~s~-~--V~L~k~GPVhdv~W-----~~s~~EF~VvyGfMPAkvtifnlr-~ 303 (566)
T KOG2315|consen 233 LVLASTDVDKTNASYYGEQTLYLLATQGESV-S--VPLLKEGPVHDVTW-----SPSGREFAVVYGFMPAKVTIFNLR-G 303 (566)
T ss_pred EEEEEEeecCCCccccccceEEEEEecCceE-E--EecCCCCCceEEEE-----CCCCCEEEEEEecccceEEEEcCC-C
Confidence 6655422 1 22 335552211 1 22334789999999 677866555 4466789999987 5
Q ss_pred eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC---CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCC
Q 000709 202 KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD---GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGS 278 (1339)
Q Consensus 202 ~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D---gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg 278 (1339)
..+..+. .++=+++- |+|.|++|+.++.+ |.|-|||+.+.+++..+ ..- .-+-+.|+| ||
T Consensus 304 ~~v~df~---egpRN~~~---fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~------~a~--~tt~~eW~P---dG 366 (566)
T KOG2315|consen 304 KPVFDFP---EGPRNTAF---FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF------KAA--NTTVFEWSP---DG 366 (566)
T ss_pred CEeEeCC---CCCccceE---ECCCCCEEEEeecCCCCCceEEEeccchhhcccc------ccC--CceEEEEcC---CC
Confidence 6666653 34445552 89999999988865 78999999987766542 222 234579999 89
Q ss_pred CEEEEEeC------CCcEEEEECCCCeeEE
Q 000709 279 PQLITIGA------DKTLAIWDTVSFKELR 302 (1339)
Q Consensus 279 ~~LaSgs~------Dg~IrIWDl~t~~~l~ 302 (1339)
.+|+|+.. |+.++||++. |..+.
T Consensus 367 e~flTATTaPRlrvdNg~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWHYT-GSLLH 395 (566)
T ss_pred cEEEEEeccccEEecCCeEEEEec-Cceee
Confidence 99998875 7889999986 45444
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.24 E-value=0.0016 Score=77.07 Aligned_cols=288 Identities=13% Similarity=0.062 Sum_probs=157.7
Q ss_pred CCCEEEEEeCC-----CeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCe
Q 000709 22 THPWLVTADAS-----DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDD 96 (1339)
Q Consensus 22 dg~~LaSgs~D-----GtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~ 96 (1339)
++.+++..... ++|.|.|..+++.+.++..+..... .+++|++.|..+..-.. + +..|. .+..
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~----R-~~~G~------~~d~ 78 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYS----R-IARGK------RTDY 78 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEecccc----c-cccCC------CCCE
Confidence 44455544333 8999999999999999998766655 48899998887753100 0 01122 4789
Q ss_pred EEEEEcCCccccccccc-cc-cccCCCCeeeeeeCCCCCeEEEEEec-CcEE-EEEecCCceeeccccccCCCCeEEEEE
Q 000709 97 VRFWQLWRNRAAAAEAP-TA-VSNVTSGFASPPPSTKGRHFLVICCV-NKAI-FLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 97 IrlWDl~~~~~l~~~~~-~~-~~~~~~~V~slafspdg~~lLasgs~-dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
|.+||..+.+.+..... .. .......-..++++|||++++++.-. +..+ ++|+.+++... .... .+...-...
T Consensus 79 V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~--ei~v-p~~~~vy~t 155 (352)
T TIGR02658 79 VEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR--MMDV-PDCYHIFPT 155 (352)
T ss_pred EEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE--EEeC-CCCcEEEEe
Confidence 99999999877632110 00 00012233467899999955555534 6666 66999876532 1111 111111111
Q ss_pred eeccccCCCCEEEEEECCCcEEEEECCC-CeE-EEEEe--cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 173 LSRSAVGDVPLVAFGSSDGVIRVLSMIS-WKL-VRRYT--GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~DgtIrIWDl~t-~~~-i~~l~--~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
++..+.+- +.||......+.+ ++. ..... .+-..++..--. +...++.++..... |+|.+-|+....
T Consensus 156 ------~e~~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~-~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 156 ------ANDTFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPA-YSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred ------cCCccEEE-eecCceEEEEecCCCceEEeeeeeecCCccccccCCc-eEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 22222222 2445444433321 221 11110 010111111000 12337777776555 999999975543
Q ss_pred cccee-ccccccc-----ccccceEEEEeeccCCCCCEEEEEe----------CCCcEEEEECCCCeeEEEecCCCcccc
Q 000709 249 DSREL-VPKLSLK-----AHDGGVVAVELSRVMGGSPQLITIG----------ADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1339)
Q Consensus 249 ~~~~~-~~~~~l~-----gH~~~V~svafsp~~~dg~~LaSgs----------~Dg~IrIWDl~t~~~l~~~~~~~~l~~ 312 (1339)
..... ....... -..+++.-+++++ ++..+.... ..+.|.++|..+++.+.++. .
T Consensus 227 ~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-----v- 297 (352)
T TIGR02658 227 AKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-----L- 297 (352)
T ss_pred ceecceeeeccccccccccCCCcceeEEEcC---CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-----C-
Confidence 21110 0001111 1234455699998 566665532 12589999999999988852 2
Q ss_pred cCCceeEEEeCCCCC-EE--EEecCCe--EEEccCC
Q 000709 313 HSVASWCHPRAPNLD-IL--TCVKDSH--IWAIEHP 343 (1339)
Q Consensus 313 H~~~V~svafspdg~-iL--s~s~Dg~--LWDi~t~ 343 (1339)
...++.++++||++ +| +...++. +.|..++
T Consensus 298 -G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 298 -GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred -CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 23678999999999 55 3334443 7887765
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=1.4e-06 Score=106.44 Aligned_cols=205 Identities=16% Similarity=0.226 Sum_probs=138.8
Q ss_pred ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 157 IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 157 v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
...+..|....+|++| +.+.++|+.|+..|.|++|++.+|....... +|...|+-+. .+.+|..+++.+.-
T Consensus 1094 w~~frd~~~~fTc~af-----s~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~ve---Ps~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAF-----SGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVE---PSVDGSTQLTSSSS 1164 (1516)
T ss_pred chhhhccccceeeEEe-----ecCCceEEeeeccceEEEEEccCcccccccc-cccccccccc---ccCCcceeeeeccc
Confidence 3445667889999999 7889999999999999999999999888876 9999999997 78888877765543
Q ss_pred C--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe-cCCCccccc
Q 000709 237 G--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI-KPVPKLACH 313 (1339)
Q Consensus 237 g--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~-~~~~~l~~H 313 (1339)
. -.-+|++.+--. ++.++. .-.++.|+. ....-+.|..-....+||++++..+.++ .+.. +.
T Consensus 1165 S~PlsaLW~~~s~~~-----~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~---~~ 1229 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGG-----PRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQTYLTDTV---TS 1229 (1516)
T ss_pred cCchHHHhccccccC-----cccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHHhcCcch---hh
Confidence 3 467899875211 122222 245678876 3333344554567789999999877763 2221 11
Q ss_pred CCceeEEEeCCCCCEEEEecCCeEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCe
Q 000709 314 SVASWCHPRAPNLDILTCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGV 393 (1339)
Q Consensus 314 ~~~V~svafspdg~iLs~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~ 393 (1339)
+-.-.+..|+|+..++- +||-+||++.... +..|..-.. -..-.||| .++.++..+
T Consensus 1230 ~y~~n~a~FsP~D~LIl--ndGvLWDvR~~~a---------------Ih~FD~ft~--~~~G~FHP-~g~eVIINS---- 1285 (1516)
T KOG1832|consen 1230 SYSNNLAHFSPCDTLIL--NDGVLWDVRIPEA---------------IHRFDQFTD--YGGGGFHP-SGNEVIINS---- 1285 (1516)
T ss_pred hhhccccccCCCcceEe--eCceeeeeccHHH---------------Hhhhhhhee--cccccccC-CCceEEeec----
Confidence 22225788999988664 5889999986421 111211111 12346899 455566554
Q ss_pred EEEEecCCCCCCccccCC
Q 000709 394 IISEFDPRSLPAVAPLPT 411 (1339)
Q Consensus 394 IlriWd~~~~p~i~~~~~ 411 (1339)
.+||+|+...+.+.|.
T Consensus 1286 --EIwD~RTF~lLh~VP~ 1301 (1516)
T KOG1832|consen 1286 --EIWDMRTFKLLHSVPS 1301 (1516)
T ss_pred --hhhhhHHHHHHhcCcc
Confidence 4899998777776654
No 283
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=0.002 Score=79.53 Aligned_cols=165 Identities=19% Similarity=0.224 Sum_probs=118.5
Q ss_pred cCchhhHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccch
Q 000709 927 LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKEN 1006 (1339)
Q Consensus 927 i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1339)
||+- -.++=|+..=-.|.+=..+.+. -+.|.+-+--|++|.|+.-.+.|.. +
T Consensus 706 i~~~---~~~~pLrdFvgle~Cd~~TRka-ml~FSfyvtiG~MD~AfksI~~IkS------~------------------ 757 (1416)
T KOG3617|consen 706 IGKT---LVAKPLRDFVGLENCDESTRKA-MLDFSFYVTIGSMDAAFKSIQFIKS------D------------------ 757 (1416)
T ss_pred cchh---hhhhhHHHhcCccccCHHHHHh-hhceeEEEEeccHHHHHHHHHHHhh------h------------------
Confidence 5553 3445555444455666677774 8899999999999999998875433 2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcC
Q 000709 1007 IVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLG 1086 (1339)
Q Consensus 1007 ~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~ 1086 (1339)
..|..++..+..+.++++|.-|+-+.+++.+ .-+|.-+....-+.-.|.+-.|.+-|
T Consensus 758 ------------~vW~nmA~McVkT~RLDVAkVClGhm~~aRg-----------aRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 758 ------------SVWDNMASMCVKTRRLDVAKVCLGHMKNARG-----------ARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred ------------HHHHHHHHHhhhhccccHHHHhhhhhhhhhh-----------HHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 5999999999999999999999999965541 12233333333355566777778777
Q ss_pred CChHHHHHH-HHcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHHHHHHHhhh
Q 000709 1087 LGREAAFSA-AILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQKE 1143 (1339)
Q Consensus 1087 ~~~~~af~~-~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~~~ 1143 (1339)
.. +-|... .....++..=|+++..||+.||.-.|-++-+=.++.---..-+.|...
T Consensus 815 Ml-EeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 815 ML-EEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 77 444444 366777788889999999999999999998877766655555566544
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=0.00036 Score=82.79 Aligned_cols=318 Identities=10% Similarity=0.065 Sum_probs=181.3
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEEEE
Q 000709 15 VKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNF 92 (1339)
Q Consensus 15 ~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF 92 (1339)
+-+.|||.|.||+|- +-.-|.+|--.+-..++.|. | .++..++ |..++|++-+....+..- +..
T Consensus 214 tyv~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF~-H--p~Vq~idfSP~EkYLVT~s~~p~~~~~----~d~------ 279 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTF-HKQGIALWGGESFDRIQRFY-H--PGVQFIDFSPNEKYLVTYSPEPIIVEE----DDN------ 279 (698)
T ss_pred eeEEecCCceEEEEE-eccceeeecCccHHHHHhcc-C--CCceeeecCCccceEEEecCCccccCc----ccC------
Confidence 468999999999987 55568899866655566664 2 3444444 889999887643321110 001
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEF 172 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf 172 (1339)
....++|||+.+|......... ........-..||.|++ +++--..+++.+++..+..... .....-..|....|
T Consensus 280 e~~~l~IWDI~tG~lkrsF~~~--~~~~~~WP~frWS~DdK-y~Arm~~~sisIyEtpsf~lld--~Kslki~gIr~Fsw 354 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSFPVI--KSPYLKWPIFRWSHDDK-YFARMTGNSISIYETPSFMLLD--KKSLKISGIRDFSW 354 (698)
T ss_pred CCceEEEEEccccchhcceecc--CCCccccceEEeccCCc-eeEEeccceEEEEecCceeeec--ccccCCccccCccc
Confidence 3468999999999765422211 11011223456999998 7777777777777655433222 12233567888888
Q ss_pred eeccccCCCCEEEEEECC-----CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe----------CCC
Q 000709 173 LSRSAVGDVPLVAFGSSD-----GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG----------SDG 237 (1339)
Q Consensus 173 ~P~s~Spdg~~LasGs~D-----gtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS----------~Dg 237 (1339)
+|.+++|+.=+.. ..+.+-.+-+++.+++-. -| .|..+. +++..+|.+|+.-- .=.
T Consensus 355 -----sP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n-lf--nVsDck-LhWQk~gdyLcvkvdR~tK~~~~g~f~ 425 (698)
T KOG2314|consen 355 -----SPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN-LF--NVSDCK-LHWQKSGDYLCVKVDRHTKSKVKGQFS 425 (698)
T ss_pred -----CCCcceEEEEcccccCCcceEEEEecCccceeeecc-ce--eeeccE-EEeccCCcEEEEEEEeeccccccceEe
Confidence 7778777754321 246666666666665542 22 233332 12566777776421 111
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC---CCcEEEEECCC-CeeEEEecCCCccccc
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVS-FKELRRIKPVPKLACH 313 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~---Dg~IrIWDl~t-~~~l~~~~~~~~l~~H 313 (1339)
.+-|+.++....- .-. ..-...|...+|-| .|+.+++-+. ..++.+|.+.+ ..... .+..+..
T Consensus 426 n~eIfrireKdIp-----ve~-velke~vi~FaWEP---~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~---lVk~~dk- 492 (698)
T KOG2314|consen 426 NLEIFRIREKDIP-----VEV-VELKESVIAFAWEP---HGDKFAVISGNTVKNTVSFYAVETNIKKPS---LVKELDK- 492 (698)
T ss_pred eEEEEEeeccCCC-----cee-eecchheeeeeecc---CCCeEEEEEccccccceeEEEeecCCCchh---hhhhhcc-
Confidence 2445555543321 111 22346688999999 5555554432 46788998873 22211 1222222
Q ss_pred CCceeEEEeCCCCCEEE-E---ecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEE
Q 000709 314 SVASWCHPRAPNLDILT-C---VKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVAT 387 (1339)
Q Consensus 314 ~~~V~svafspdg~iLs-~---s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLat 387 (1339)
...+.+.|+|.|++++ + |..|. ++|.....+ ..+-...+- ..+.+.|.| .|.++.+
T Consensus 493 -~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~---------------k~~~~~eh~-~at~veWDP-tGRYvvT 554 (698)
T KOG2314|consen 493 -KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL---------------KDTASPEHF-AATEVEWDP-TGRYVVT 554 (698)
T ss_pred -cccceEEEcCCCcEEEEEEecccccceEEEecchhhh---------------hhccCcccc-ccccceECC-CCCEEEE
Confidence 3345789999999663 2 33443 577663211 011111222 577899999 5677888
Q ss_pred EECC
Q 000709 388 GTNV 391 (1339)
Q Consensus 388 Gs~D 391 (1339)
++..
T Consensus 555 ~ss~ 558 (698)
T KOG2314|consen 555 SSSS 558 (698)
T ss_pred eeeh
Confidence 7653
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00012 Score=89.46 Aligned_cols=161 Identities=13% Similarity=0.173 Sum_probs=123.4
Q ss_pred CeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeecc-----ccC--CCCEEEEEECCCcEE
Q 000709 122 GFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRS-----AVG--DVPLVAFGSSDGVIR 194 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s-----~Sp--dg~~LasGs~DgtIr 194 (1339)
.-.++.|+|.| +++-|+.+-+.++|..+.+ .+.....|...|+.+.|.|.. .|| ..-+|+++...|.|.
T Consensus 17 N~~A~Dw~~~G--LiAygshslV~VVDs~s~q--~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGSHSLVSVVDSRSLQ--LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccCccc--eEEEecCceEEEEehhhhh--hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 35678899988 8899998888888887764 355678899999999998832 232 234678888899999
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg-~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
+||...+..+..+. .|..++..++|+..-++. .+|+.-....+|.+|+..+|+..... ..-.....|+.+.|
T Consensus 93 l~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~------~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 93 LVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY------DYSHEILSCFRVDP 165 (1062)
T ss_pred EEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc------ccCCcceeeeeeCC
Confidence 99999988888876 889999999998655666 57777788889999999999876541 22233456788888
Q ss_pred cCCCCCEEEEEeCCCcEEEEEC
Q 000709 274 VMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
+ |.+.+..-+..|.|.+.+.
T Consensus 166 f--d~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 166 F--DSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred C--CcceEEEEccCceEEEEec
Confidence 6 6677777777777777665
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.13 E-value=7.9e-06 Score=98.68 Aligned_cols=297 Identities=11% Similarity=0.107 Sum_probs=173.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEH-RQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~t-g~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
+++..+..+|.|+-+|.++.-|.. +-|+.. +..-+-+. |... ..++-.- ......-+.+.|
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~--h~tp--------w~vad~q-------ws~h~a~~~wiV 86 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLH--HITP--------WQVADVQ-------WSPHPAKPYWIV 86 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeee--ccCc--------chhccee-------cccCCCCceeEE
Confidence 467788999999988888776654 445442 22221111 1000 0000000 000001344455
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEE
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVC 169 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~ 169 (1339)
.+....-.+|++....... .......|...|+.+.|+++.+.++++++.|..+ .||+++........... ...-..
T Consensus 87 sts~qkaiiwnlA~ss~~a--Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asq 163 (1081)
T KOG0309|consen 87 STSNQKAIIWNLAKSSSNA--IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQ 163 (1081)
T ss_pred ecCcchhhhhhhhcCCccc--eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc-cccCce
Confidence 5556666677765432211 1222233488899999999999899999999888 78988765422222222 345567
Q ss_pred EEEeeccccCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC
Q 000709 170 MEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ 248 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~-~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~ 248 (1339)
|.|. -....+...+..+.|++||.+.+. .+..++ +|...|+.+. +.......+.+++.||+|+.||.....
T Consensus 164 Vkwn-----yk~p~vlasshg~~i~vwd~r~gs~pl~s~K-~~vs~vn~~~--fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 164 VKWN-----YKDPNVLASSHGNDIFVWDLRKGSTPLCSLK-GHVSSVNSID--FNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred eeec-----ccCcchhhhccCCceEEEeccCCCcceEEec-ccceeeehHH--HhhhhhhhhcccCCCCceeeecccccc
Confidence 8884 334445555678889999998764 455555 8999999887 244455678899999999999987654
Q ss_pred ccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeE----EEecCCCcccccCCceeEEEeCC
Q 000709 249 DSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL----RRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 249 ~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l----~~~~~~~~l~~H~~~V~svafsp 324 (1339)
...+ . ....+.+|+.-.|-|. +++.++.---.+..+.+++.++.... ....++..+.||.+.|....|-.
T Consensus 236 ~e~~----~-~vtt~~piw~~r~~Pf-g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~ 309 (1081)
T KOG0309|consen 236 TESK----R-TVTTNFPIWRGRYLPF-GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRK 309 (1081)
T ss_pred cccc----e-eccccCcceecccccc-CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhh
Confidence 3211 1 1223455666677774 33433332222335555555432211 11234455789988775444422
Q ss_pred --------CC---CEEEEecCCe--EEEccCC
Q 000709 325 --------NL---DILTCVKDSH--IWAIEHP 343 (1339)
Q Consensus 325 --------dg---~iLs~s~Dg~--LWDi~t~ 343 (1339)
|. ++++=|.|.+ +|-+...
T Consensus 310 r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 310 RKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 22 2678888885 8988754
No 287
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.12 E-value=6.1e-06 Score=65.12 Aligned_cols=36 Identities=22% Similarity=0.564 Sum_probs=35.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWD 39 (1339)
+++|++|.+.|++|+|+|++.+|++|+.|++|+|||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 789999999999999999999999999999999998
No 288
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=3.6e-06 Score=102.89 Aligned_cols=219 Identities=15% Similarity=0.225 Sum_probs=143.0
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCcccccc
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
+++|+.|+...+|++|+-+.+.|+.|+..|.|+++|+.+|.......+|
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH------------------------------- 1142 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH------------------------------- 1142 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc-------------------------------
Confidence 6889999999999999999999999999999999999987655544432
Q ss_pred CCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE--EEEecCCceeeccccc
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQE 161 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I--~wD~~t~~~~~v~~~~ 161 (1339)
.+.|+-+.-+.+|..+|.+.+...-. .|+..+- .. ..
T Consensus 1143 ------------------------------------~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~-~~----~~ 1181 (1516)
T KOG1832|consen 1143 ------------------------------------QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST-GG----PR 1181 (1516)
T ss_pred ------------------------------------ccccccccccCCcceeeeeccccCchHHHhccccc-cC----cc
Confidence 33445555566776566655555533 6765441 11 11
Q ss_pred cCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC--CCCeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 162 LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH--KGSISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 162 ~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH--~~~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
..-..-.|+.| +.....-+.|+......|||++++..+.++..+. ..+-..++ .|+|+..+++ .||
T Consensus 1182 Hsf~ed~~vkF-----sn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a--~FsP~D~LIl---ndG-- 1249 (1516)
T KOG1832|consen 1182 HSFDEDKAVKF-----SNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLA--HFSPCDTLIL---NDG-- 1249 (1516)
T ss_pred ccccccceeeh-----hhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccc--ccCCCcceEe---eCc--
Confidence 12334567888 3444444555555678899999988776643221 11222232 3899988887 455
Q ss_pred EEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeE
Q 000709 240 ILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWC 319 (1339)
Q Consensus 240 rVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~s 319 (1339)
.+||++..+.++.|.. ++.. ..=.||| .|..++.-+ .|||+++.+.++.... + .-..
T Consensus 1250 vLWDvR~~~aIh~FD~-ft~~------~~G~FHP---~g~eVIINS-----EIwD~RTF~lLh~VP~---L-----dqc~ 1306 (1516)
T KOG1832|consen 1250 VLWDVRIPEAIHRFDQ-FTDY------GGGGFHP---SGNEVIINS-----EIWDMRTFKLLHSVPS---L-----DQCA 1306 (1516)
T ss_pred eeeeeccHHHHhhhhh-heec------ccccccC---CCceEEeec-----hhhhhHHHHHHhcCcc---c-----cceE
Confidence 4899998877665421 1111 1236899 677777666 5999999887776321 1 2236
Q ss_pred EEeCCCCCEE
Q 000709 320 HPRAPNLDIL 329 (1339)
Q Consensus 320 vafspdg~iL 329 (1339)
+.|+..|.++
T Consensus 1307 VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1307 VTFNSTGDVM 1316 (1516)
T ss_pred EEeccCccch
Confidence 7788888765
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.09 E-value=0.0013 Score=77.90 Aligned_cols=183 Identities=13% Similarity=0.049 Sum_probs=118.5
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC--------
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-------- 191 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg-------- 191 (1339)
.-.+..++|||.|. +|++....++..|+..... +. .......|..+.| ||.++||++=+...
T Consensus 32 ~~p~~~~~~SP~G~-~l~~~~~~~V~~~~g~~~~-~l---~~~~~~~V~~~~f-----SP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 32 NWPVAYVSESPLGT-YLFSEHAAGVECWGGPSKA-KL---VRFRHPDVKYLDF-----SPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred CcchhheeecCcch-heehhhccceEEccccchh-he---eeeecCCceeccc-----CcccceeeeeccCCccChhhcc
Confidence 55678899999997 8888888888888665543 11 2333457888999 78999999866533
Q ss_pred -------cEEEEECCCCeEEEEEecCCCCC--ee-EEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccc
Q 000709 192 -------VIRVLSMISWKLVRRYTGGHKGS--IS-CLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKA 261 (1339)
Q Consensus 192 -------tIrIWDl~t~~~i~~l~~gH~~~--V~-sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~g 261 (1339)
.+.+||..++..+..+. +.... .+ -+ .++.+..+++-- ....++|+++ ++..... +...++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~---k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~--p~~~lr- 172 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVL---KFSIDDKYVARV-VGSSLYIHEI-TDNIEEH--PFKNLR- 172 (561)
T ss_pred CCccccCceeEEeccCceeEeecc-ccCCccccccee---eeeecchhhhhh-ccCeEEEEec-CCccccC--chhhcc-
Confidence 48999999999998886 43333 22 22 356666665543 3457899997 4432211 112222
Q ss_pred cccceEEEEeeccCCCCCEEEE-----EeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 262 HDGGVVAVELSRVMGGSPQLIT-----IGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 262 H~~~V~svafsp~~~dg~~LaS-----gs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
..+|....|+|. .++..|+. .+.++++++|.+..++.+.+-. +. ...-..+.|++.|.++
T Consensus 173 -~~gi~dFsisP~-~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~----lf--k~~~~qLkW~~~g~~l 237 (561)
T COG5354 173 -PVGILDFSISPE-GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN----LF--KVSGVQLKWQVLGKYL 237 (561)
T ss_pred -ccceeeEEecCC-CCCceEEEEccccCCCCcEEEEEEccCCCeeeeee----eE--eecccEEEEecCCceE
Confidence 356888899993 13444553 4678999999998766655421 11 1111267888888854
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.09 E-value=0.00067 Score=74.45 Aligned_cols=179 Identities=9% Similarity=-0.010 Sum_probs=116.7
Q ss_pred EEEEEecCcEEEE-EecCCceeeccccccCCC--CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC-Ce-EEEEEec
Q 000709 135 FLVICCVNKAIFL-DLVTMRGRDIPKQELDNK--SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS-WK-LVRRYTG 209 (1339)
Q Consensus 135 lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~--~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t-~~-~i~~l~~ 209 (1339)
-+..++.|+++.. ++..+..+ ...|.. .+.++.+ ++|++++++.++...|..|.+.. ++ ..+....
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~----~~~h~~~~~~ns~~~-----snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a 200 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK----FAVHNQNLTQNSLHY-----SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA 200 (344)
T ss_pred ceeeccCCcceeEEEEecCccc----ceeeccccceeeeEE-----cCCCceEEEecCCCcceEEEeCCccceeeeeEec
Confidence 4556777777743 44433221 233433 3777888 88999999999999999998864 23 3332333
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCc
Q 000709 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1339)
Q Consensus 210 gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~ 289 (1339)
.....-.+.. ++.....+|++..||++.|||++......... ..+-..|.+.+..+.|++. +--++|.-.-.-+.
T Consensus 201 ~t~D~gF~~S---~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~-sstrp~hnGa~R~c~Fsl~-g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 201 PTSDHGFYNS---FSENDLQFAVVFQDGTCAIYDVRNMATPMAEI-SSTRPHHNGAFRVCRFSLY-GLLDLLFISEHFSR 275 (344)
T ss_pred ccCCCceeee---eccCcceEEEEecCCcEEEEEecccccchhhh-cccCCCCCCceEEEEecCC-CcceEEEEecCcce
Confidence 4445556665 57788899999999999999998754322111 1122458999999999982 12245555566789
Q ss_pred EEEEECCCCeeEEEecCCC-cccccCCc-eeEEEeCCCCC
Q 000709 290 LAIWDTVSFKELRRIKPVP-KLACHSVA-SWCHPRAPNLD 327 (1339)
Q Consensus 290 IrIWDl~t~~~l~~~~~~~-~l~~H~~~-V~svafspdg~ 327 (1339)
+.+.|+++++..+.+.... ....|... +..-.|+.++.
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 9999999988766653332 23444433 66666666655
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.03 E-value=6.7e-05 Score=81.79 Aligned_cols=145 Identities=20% Similarity=0.237 Sum_probs=89.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-----CCcEEEEeCCCCCcccee
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKL-VRRYTGGHKGSISCLMTFMASSGEALLVSGGS-----DGLLILWSADHGQDSREL 253 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~-i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-----DgtVrVWDl~tg~~~~~~ 253 (1339)
.++.++++..||.+.+++.+.-.. ..++...|.+.. +.+ .-..++.+.++.. -+..+.|+++..+....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~---~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~- 174 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRK---ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP- 174 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhccccccccc-ccc---eeecccEEecCCcceEeeccceeeecccccccccc-
Confidence 467799999999999999764211 111111121111 111 1123444443321 12344555543322110
Q ss_pred cccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC--EEEE
Q 000709 254 VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--ILTC 331 (1339)
Q Consensus 254 ~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--iLs~ 331 (1339)
. +.-...|.+++-||. ..+++++|+.||.+-+||.+..... ...+..|...++.+-|+|... ++++
T Consensus 175 -~----~~~~~~v~~l~~hp~--qq~~v~cgt~dg~~~l~d~rn~~~p-----~S~l~ahk~~i~eV~FHpk~p~~Lft~ 242 (319)
T KOG4714|consen 175 -S----KKALDAVTALCSHPA--QQHLVCCGTDDGIVGLWDARNVAMP-----VSLLKAHKAEIWEVHFHPKNPEHLFTC 242 (319)
T ss_pred -c----ccccccchhhhCCcc--cccEEEEecCCCeEEEEEcccccch-----HHHHHHhhhhhhheeccCCCchheeEe
Confidence 1 111234999999994 5678889999999999999976432 234789999999999999743 8899
Q ss_pred ecCCeEEEcc
Q 000709 332 VKDSHIWAIE 341 (1339)
Q Consensus 332 s~Dg~LWDi~ 341 (1339)
++||.+|.+.
T Consensus 243 sedGslw~wd 252 (319)
T KOG4714|consen 243 SEDGSLWHWD 252 (319)
T ss_pred cCCCcEEEEc
Confidence 9999986655
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.03 E-value=0.0017 Score=87.76 Aligned_cols=210 Identities=10% Similarity=-0.020 Sum_probs=128.3
Q ss_pred CeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc-------cc-------CCCCeEEEEEeeccccC-CCCEEE
Q 000709 122 GFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ-------EL-------DNKSLVCMEFLSRSAVG-DVPLVA 185 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~-------~~-------h~~~V~~vaf~P~s~Sp-dg~~La 185 (1339)
.-..+++++++..++++-..++.| ++|..++....+... .. .-....+++| ++ ++.+++
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~-----dp~~g~LyV 699 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF-----EPVNEKVYI 699 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEE-----ecCCCeEEE
Confidence 357788998877455666666666 458766543222100 00 0124567888 56 566777
Q ss_pred EEECCCcEEEEECCCCeEEEEEe-c-------CCC------CCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCcc
Q 000709 186 FGSSDGVIRVLSMISWKLVRRYT-G-------GHK------GSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDS 250 (1339)
Q Consensus 186 sGs~DgtIrIWDl~t~~~i~~l~-~-------gH~------~~V~sl~wf~~spdg~-~LaSgS~DgtVrVWDl~tg~~~ 250 (1339)
+.+.++.|++||..++... .+. . ++. .....++ ++++++ ++++-+.+++|++||+.++...
T Consensus 700 ad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIa---vspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGIS---LSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred EECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEE---EeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 7778899999999876543 221 0 111 1233454 678887 5566677899999999876421
Q ss_pred ceec-------ccccccc--------cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCC-------
Q 000709 251 RELV-------PKLSLKA--------HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVP------- 308 (1339)
Q Consensus 251 ~~~~-------~~~~l~g--------H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~------- 308 (1339)
.... ....+.. .-....+++|++ ++.++++-+.+++|++||..++..........
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~---dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~ 852 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK---DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK 852 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeC---CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCc
Confidence 1000 0000100 112346888988 78889999999999999998877654322110
Q ss_pred cccccCCceeEEEeCCCCCEE-EEecCCe--EEEccCC
Q 000709 309 KLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHP 343 (1339)
Q Consensus 309 ~l~~H~~~V~svafspdg~iL-s~s~Dg~--LWDi~t~ 343 (1339)
...++......++++++|+++ +.+.+++ +||+.++
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 012233456689999999965 4455665 7888765
No 293
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.99 E-value=3.6e-05 Score=83.84 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=94.9
Q ss_pred EEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000709 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1339)
Q Consensus 135 lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~ 214 (1339)
+...-..|..+.|+.+..+... ......+.|.+++-||. ..+.+++|+.||.+-+||++.......+...|+..
T Consensus 152 ~g~~n~~d~~~a~~~~p~~t~~--~~~~~~~~v~~l~~hp~----qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~ 225 (319)
T KOG4714|consen 152 CGNWNAQDNFYANTLDPIKTLI--PSKKALDAVTALCSHPA----QQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE 225 (319)
T ss_pred cceEeeccceeeeccccccccc--ccccccccchhhhCCcc----cccEEEEecCCCeEEEEEcccccchHHHHHHhhhh
Confidence 3444455556666554332211 12233445999999763 36678899999999999999887666666689999
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc-----------------cce-ecccccccccccceEEEEeeccCC
Q 000709 215 ISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD-----------------SRE-LVPKLSLKAHDGGVVAVELSRVMG 276 (1339)
Q Consensus 215 V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~-----------------~~~-~~~~~~l~gH~~~V~svafsp~~~ 276 (1339)
++-+. |.+.++..|++++.||.+-.||..+.-. ++. +.....+......|+++...
T Consensus 226 i~eV~--FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~---- 299 (319)
T KOG4714|consen 226 IWEVH--FHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL---- 299 (319)
T ss_pred hhhee--ccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc----
Confidence 99996 3566789999999999999999874210 110 00000111222335555543
Q ss_pred CCCEEEEEeCCCcEEEEE
Q 000709 277 GSPQLITIGADKTLAIWD 294 (1339)
Q Consensus 277 dg~~LaSgs~Dg~IrIWD 294 (1339)
+..|++|++-+.|++++
T Consensus 300 -g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 300 -GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred -CceEEeccccceEEEec
Confidence 56888888888887765
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.91 E-value=0.0017 Score=78.85 Aligned_cols=265 Identities=13% Similarity=0.021 Sum_probs=138.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEe--ccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEE
Q 000709 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLV--GAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFW 100 (1339)
Q Consensus 23 g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~v--s~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlW 100 (1339)
+..++.++.+|.+.-+|.++|+.+.+...... +... -.++..++ +. .++.+..+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~ssP~v~~~~v~v-~~---------------------~~g~l~al 175 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE--ALSRPVVSDGLVLV-HT---------------------SNGMLQAL 175 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCc--eecCCEEECCEEEE-EC---------------------CCCEEEEE
Confidence 44667778899999999999999988764321 1100 01222222 11 34555666
Q ss_pred EcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccC--CC---CeEEEEEee
Q 000709 101 QLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELD--NK---SLVCMEFLS 174 (1339)
Q Consensus 101 Dl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h--~~---~V~~vaf~P 174 (1339)
|..+++.+................+.... ++. +++ ++.++.+ .+|..+++..-....... .. ....+.-.|
T Consensus 176 d~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~-v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP 252 (394)
T PRK11138 176 NESDGAVKWTVNLDVPSLTLRGESAPATA-FGG-AIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTP 252 (394)
T ss_pred EccCCCEeeeecCCCCcccccCCCCCEEE-CCE-EEE-EcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCc
Confidence 66655544211100000000000001111 232 333 4444444 567777653211000000 00 011111111
Q ss_pred ccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceec
Q 000709 175 RSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELV 254 (1339)
Q Consensus 175 ~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~ 254 (1339)
. -.+..++.++.+|.+..+|..+++.+-+...+. ...+. ..+..|+.++.||.|..+|..+|+.+....
T Consensus 253 ~---v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~---~~~~~-----~~~~~vy~~~~~g~l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 253 V---VVGGVVYALAYNGNLVALDLRSGQIVWKREYGS---VNDFA-----VDGGRIYLVDQNDRVYALDTRGGVELWSQS 321 (394)
T ss_pred E---EECCEEEEEEcCCeEEEEECCCCCEEEeecCCC---ccCcE-----EECCEEEEEcCCCeEEEEECCCCcEEEccc
Confidence 0 125567777889999999999998765543111 11111 145677778899999999999987543210
Q ss_pred ccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecC
Q 000709 255 PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKD 334 (1339)
Q Consensus 255 ~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~D 334 (1339)
.+. + ....+..+. +.+|+.++.||.|.+.|..+|+.+.+.+. ....+.+-..-.+++++.++.|
T Consensus 322 ---~~~-~-~~~~sp~v~-----~g~l~v~~~~G~l~~ld~~tG~~~~~~~~------~~~~~~s~P~~~~~~l~v~t~~ 385 (394)
T PRK11138 322 ---DLL-H-RLLTAPVLY-----NGYLVVGDSEGYLHWINREDGRFVAQQKV------DSSGFLSEPVVADDKLLIQARD 385 (394)
T ss_pred ---ccC-C-CcccCCEEE-----CCEEEEEeCCCEEEEEECCCCCEEEEEEc------CCCcceeCCEEECCEEEEEeCC
Confidence 011 1 111222222 35788899999999999999998776421 1112222111235678888999
Q ss_pred CeEEEcc
Q 000709 335 SHIWAIE 341 (1339)
Q Consensus 335 g~LWDi~ 341 (1339)
|.|+-++
T Consensus 386 G~l~~~~ 392 (394)
T PRK11138 386 GTVYAIT 392 (394)
T ss_pred ceEEEEe
Confidence 9877654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.90 E-value=0.0097 Score=67.20 Aligned_cols=181 Identities=12% Similarity=-0.018 Sum_probs=114.1
Q ss_pred eeeeeC-CCCCeEEEEEecCcEEEEEecCCceeeccccc--c-CCCCeEEEEEeeccccCCCCEEEEEECC--------C
Q 000709 124 ASPPPS-TKGRHFLVICCVNKAIFLDLVTMRGRDIPKQE--L-DNKSLVCMEFLSRSAVGDVPLVAFGSSD--------G 191 (1339)
Q Consensus 124 ~slafs-pdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~--~-h~~~V~~vaf~P~s~Spdg~~LasGs~D--------g 191 (1339)
..+.+. +++ .++.+..++..++|..+++...+.... . ....++.+++ .++|++.++.... |
T Consensus 43 ~G~~~~~~~g--~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~v-----d~~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 43 NGMAFDRPDG--RLYVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAV-----DPDGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEECTTS--EEEEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGSE
T ss_pred ceEEEEccCC--EEEEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEE-----cCCCCEEEEecCCCcccccccc
Confidence 445555 554 455556677777788887665443332 1 3457888999 7899977776644 5
Q ss_pred cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEE-EEeCCCcEEEEeCCCCCc-cceecccccccccccceEEE
Q 000709 192 VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLV-SGGSDGLLILWSADHGQD-SRELVPKLSLKAHDGGVVAV 269 (1339)
Q Consensus 192 tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~La-SgS~DgtVrVWDl~tg~~-~~~~~~~~~l~gH~~~V~sv 269 (1339)
.|..++.. ++...... .-...+.++ ++++++.|. +-+..+.|..+++..... +........+....+..-.+
T Consensus 116 ~v~~~~~~-~~~~~~~~--~~~~pNGi~---~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~ 189 (246)
T PF08450_consen 116 SVYRIDPD-GKVTVVAD--GLGFPNGIA---FSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGL 189 (246)
T ss_dssp EEEEEETT-SEEEEEEE--EESSEEEEE---EETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEE
T ss_pred ceEEECCC-CeEEEEec--CcccccceE---ECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcc
Confidence 57777777 55443332 345567786 789998665 667788899999864332 22111111222222347889
Q ss_pred EeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeC-CCCC
Q 000709 270 ELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRA-PNLD 327 (1339)
Q Consensus 270 afsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafs-pdg~ 327 (1339)
++.. ++++.++....+.|.++|.+ |+.+..+. .....+++++|. ++..
T Consensus 190 ~vD~---~G~l~va~~~~~~I~~~~p~-G~~~~~i~------~p~~~~t~~~fgg~~~~ 238 (246)
T PF08450_consen 190 AVDS---DGNLWVADWGGGRIVVFDPD-GKLLREIE------LPVPRPTNCAFGGPDGK 238 (246)
T ss_dssp EEBT---TS-EEEEEETTTEEEEEETT-SCEEEEEE-------SSSSEEEEEEESTTSS
T ss_pred eEcC---CCCEEEEEcCCCEEEEECCC-ccEEEEEc------CCCCCEEEEEEECCCCC
Confidence 9988 78888888889999999988 88777653 223367888883 5544
No 296
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.90 E-value=0.00015 Score=80.45 Aligned_cols=250 Identities=14% Similarity=0.186 Sum_probs=142.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-E----EEEEeccCc--------------cceEEeccc--cceeEe
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ-V----IYELKAGGV--------------DQRRLVGAK--LEKLAE 69 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~-~----l~~~~~~~~--------------~~i~~vs~d--~~~Las 69 (1339)
.+.|++|.|.-.|.||++|...|.|.++.-+... | ..+|+.+.. ..|....+. ...|++
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4579999999999999999999999999765322 1 223332221 111111111 112222
Q ss_pred eccccCCCccccccCCceEEEEEcCCeEEEEEcCCccccc-----------------------cc---------------
Q 000709 70 GELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAA-----------------------AE--------------- 111 (1339)
Q Consensus 70 gs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~-----------------------~~--------------- 111 (1339)
+ .|.+|++|.+....... ..
T Consensus 106 t----------------------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p 163 (460)
T COG5170 106 T----------------------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKP 163 (460)
T ss_pred c----------------------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEecc
Confidence 2 58899999876542110 00
Q ss_pred cccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEec--CCceeeccccccC-----CCCeEEEEEeeccccCCCCEE
Q 000709 112 APTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLV--TMRGRDIPKQELD-----NKSLVCMEFLSRSAVGDVPLV 184 (1339)
Q Consensus 112 ~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~--t~~~~~v~~~~~h-----~~~V~~vaf~P~s~Spdg~~L 184 (1339)
.+.....|.--+.++.|..|.+ .++++.+-++-.|++. .+.. .+.-.+.| ..-|++..|||. ....+
T Consensus 164 ~rvyaNaH~yhiNSiS~NsD~e-t~lSaDdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~----~cn~f 237 (460)
T COG5170 164 CRVYANAHPYHINSISFNSDKE-TLLSADDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPE----MCNVF 237 (460)
T ss_pred ceeccccceeEeeeeeecCchh-eeeeccceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHh----HcceE
Confidence 0111122344577899998887 6665555455577543 2222 11112333 346888999763 45677
Q ss_pred EEEECCCcEEEEECCCCeEE----EEE-----------ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCC-
Q 000709 185 AFGSSDGVIRVLSMISWKLV----RRY-----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQ- 248 (1339)
Q Consensus 185 asGs~DgtIrIWDl~t~~~i----~~l-----------~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~- 248 (1339)
...++.|.|++-|++..... +.+ ..+-...|..+. |+++|+++++-+ --+|++||++..+
T Consensus 238 mYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~k---Fs~ngryIlsRd-yltvkiwDvnm~k~ 313 (460)
T COG5170 238 MYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFK---FSDNGRYILSRD-YLTVKIWDVNMAKN 313 (460)
T ss_pred EEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceE---EcCCCcEEEEec-cceEEEEecccccC
Confidence 77889999999999843111 000 011223445554 899999998754 3589999998754
Q ss_pred ccceeccccccc------ccccce---EEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 249 DSRELVPKLSLK------AHDGGV---VAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 249 ~~~~~~~~~~l~------gH~~~V---~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
++++..-...+. -..+.| ..+.|+- |...+++|+..+..-+|-.
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg---d~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG---DDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecC---Ccccccccccccceeeecc
Confidence 233211000000 011223 2356665 6778888888877777763
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.87 E-value=4.5e-05 Score=85.90 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=105.9
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCce--eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRG--RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~--~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
.+.|.++.|...++ ++..|+.+|.| .+|++.+.. ........|...|+|+..+ .-++++|++.+.+|+|++|
T Consensus 252 ksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~L----q~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 252 KSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQIL----QFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred chhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhh----ccccceEeeccCcCceeEe
Confidence 56788899998886 89999999988 459876521 1122346789999998875 2368889999999999999
Q ss_pred ECCCCeE---EEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 197 SMISWKL---VRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 197 Dl~t~~~---i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
|++--++ +..++ ||...-.-+- +...+....++++++|...|+|.++.|..+.+.. +.....+..+.+++|..
T Consensus 327 D~R~~K~~~~V~qYe-GHvN~~a~l~-~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip--f~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYE-GHVNLSAYLP-AHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP--FPYSASEVDIPSVAFDS 402 (425)
T ss_pred eehhhhcccceeeee-cccccccccc-cccccccceEEEccCeeEEEEEecccCceeeccC--CCCccccccccceehhc
Confidence 9986666 88887 8876655553 3467778899999999999999999998776532 22222333455566543
No 298
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.86 E-value=0.0011 Score=72.81 Aligned_cols=222 Identities=9% Similarity=-0.037 Sum_probs=129.6
Q ss_pred EEEEcCC-----CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec---cccceeEeeccccCCCccccccCCce
Q 000709 16 KIQLHPT-----HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG---AKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 16 ~vafSPd-----g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs---~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
.+.|-|. -.+||.||..|...+|...+.+....+-..+..++..+. .....+..++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s---------------- 135 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS---------------- 135 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc----------------
Confidence 4566663 348999999999999999876554433323333333322 1111111111
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccC-CCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecc-ccccCC
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNV-TSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP-KQELDN 164 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~-~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~-~~~~h~ 164 (1339)
.|.++++.++..+... ..-|. .-.+.++.++++++ ++++.++...| ++.+.......+. ......
T Consensus 136 -----ndht~k~~~~~~~s~~------~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 136 -----NDHTGKTMVVSGDSNK------FAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred -----CCcceeEEEEecCccc------ceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 3566666665544221 11111 12377899999998 66666666655 5533322111111 222334
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCCeeEEEEeeeCCCC--CEEEEEeCCCc
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV----RRYTGGHKGSISCLMTFMASSGE--ALLVSGGSDGL 238 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i----~~l~~gH~~~V~sl~wf~~spdg--~~LaSgS~Dgt 238 (1339)
+.-.|..| +.....+|+++.||++.|||++..... ......|++.+..+. |++.| .+|+..-.=+.
T Consensus 204 D~gF~~S~-----s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~---Fsl~g~lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 204 DHGFYNSF-----SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCR---FSLYGLLDLLFISEHFSR 275 (344)
T ss_pred CCceeeee-----ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEE---ecCCCcceEEEEecCcce
Confidence 55567888 778889999999999999999865332 122346899999887 67655 35555555678
Q ss_pred EEEEeCCCCCccceecc-ccccccccc-ceEEEEeec
Q 000709 239 LILWSADHGQDSRELVP-KLSLKAHDG-GVVAVELSR 273 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~-~~~l~gH~~-~V~svafsp 273 (1339)
+.|.|++++...+.+.+ .-....|.. .+..-.|+.
T Consensus 276 ~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 276 VHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred EEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 99999998875443211 111222332 266666665
No 299
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0084 Score=75.11 Aligned_cols=168 Identities=17% Similarity=0.091 Sum_probs=122.3
Q ss_pred CcEEEEEcCCCcEEEEecChhHHHhHHHHhcCCHHHHHHHHHh--cCc----hhhHHHHHHHHhCCcchhhcccccccCc
Q 000709 884 DGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASR--LGR----EHHDDLAQFMLGMGYATEALHLPGISKR 957 (1339)
Q Consensus 884 ~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~--i~~----~~~~~~a~fL~~~G~~e~Al~~~~d~~~ 957 (1339)
.+.+|++..++.++.+.=-...-+.-++.....|+-|..++.. .+. +.|.+.+.||-++|-.++|..-+-..
T Consensus 317 ~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t-- 394 (933)
T KOG2114|consen 317 SFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIET-- 394 (933)
T ss_pred CCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH--
Confidence 3467788888888876555555666677778899999999987 343 33788899999999999999766554
Q ss_pred cEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHH
Q 000709 958 LEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIA 1037 (1339)
Q Consensus 958 ~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a 1037 (1339)
.|-+|.+.=|.+.++. ++=+.|..+.
T Consensus 395 --------I~~le~s~Vi~kfLda-------------------------------------q~IknLt~YL--------- 420 (933)
T KOG2114|consen 395 --------IGFLEPSEVIKKFLDA-------------------------------------QRIKNLTSYL--------- 420 (933)
T ss_pred --------cccCChHHHHHHhcCH-------------------------------------HHHHHHHHHH---------
Confidence 6677777777766432 3445555542
Q ss_pred HHHHHHHHhcCCccccccccchhh-hHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHHHcCCchH
Q 000709 1038 REALKRLAAAGSVKGALQGHELRG-LALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAE 1116 (1339)
Q Consensus 1038 ~~~~~~~~~~~~~~~~~~~~d~~~-l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~ 1116 (1339)
+|+.+. + |-..|... |+-+|...+|.++|.+..+.+. .|.+ -=|++.++++|.+.+.+.|
T Consensus 421 -e~L~~~---g-----la~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---------~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 421 -EALHKK---G-----LANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---------FFDVETALEILRKSNYLDE 481 (933)
T ss_pred -HHHHHc---c-----cccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---------eeeHHHHHHHHHHhChHHH
Confidence 344444 2 11123333 4456778999999999988877 6655 2399999999999999999
Q ss_pred HHHHHHHhCC
Q 000709 1117 AVLHAHAHGR 1126 (1339)
Q Consensus 1117 A~~~A~t~~~ 1126 (1339)
|.++|..|+.
T Consensus 482 a~~LA~k~~~ 491 (933)
T KOG2114|consen 482 AELLATKFKK 491 (933)
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 300
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.81 E-value=0.013 Score=78.02 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=137.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
...|.|++||||+.+|+....+++|.+-+ .+...+.+...+..+- ...+.+..|..... .-++|..-+..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~-----~~~~~VsVGWGkKe----TQF~Gs~gK~a 189 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLDSDDF-----GESKHVSVGWGKKE----TQFHGSAGKAA 189 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecCcccc-----CCCceeeeccCccc----CccCcchhhhh
Confidence 35799999999999999999999998876 4556666655331110 11223333321110 00111000000
Q ss_pred EEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEec---C---cEEEEEecCCceeeccccccCC
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCV---N---KAIFLDLVTMRGRDIPKQELDN 164 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~---d---g~I~wD~~t~~~~~v~~~~~h~ 164 (1339)
+- .+-|.... ........ .++.-..++|..||+ ++++.+- . +.+++.-+.|.... ..+.-.
T Consensus 190 a~-----~~~~p~~~---~~d~~~~s--~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~ReG~L~s--tSE~v~ 256 (928)
T PF04762_consen 190 AR-----QLRDPTVP---KVDEGKLS--WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSREGELQS--TSEPVD 256 (928)
T ss_pred hh-----hccCCCCC---ccccCccc--cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCCceEEe--ccccCC
Confidence 00 00000000 00001111 244556789999998 6666653 3 34444333344322 222333
Q ss_pred CCeEEEEEeeccccCCCCEEEEEEC---CCcEEEEECCCCeEEEEEe---cCCCCCeeEEEEeeeCCCCCEEEEEeCCCc
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSS---DGVIRVLSMISWKLVRRYT---GGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~---DgtIrIWDl~t~~~i~~l~---~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt 238 (1339)
+--.+++| .|.|++|++... ...|.+|.- +|-....|. ......|..+. ++.++..|+..-.|.
T Consensus 257 gLe~~l~W-----rPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~---Wn~ds~iLAv~~~~~- 326 (928)
T PF04762_consen 257 GLEGALSW-----RPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELA---WNSDSEILAVWLEDR- 326 (928)
T ss_pred CccCCccC-----CCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEE---ECCCCCEEEEEecCC-
Confidence 44456888 678999998864 456777774 343333332 13456788887 588999999977665
Q ss_pred EEEEeCCCCCccceecccccccc-cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 239 LILWSADHGQDSRELVPKLSLKA-HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~g-H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
|.+|-..+-.. ..+..+.- ....+..+.||| .+...|...+.+|.+..+++.
T Consensus 327 vqLWt~~NYHW----YLKqei~~~~~~~~~~~~Wdp--e~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 327 VQLWTRSNYHW----YLKQEIRFSSSESVNFVKWDP--EKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred ceEEEeeCCEE----EEEEEEEccCCCCCCceEECC--CCCCEEEEEecCCcEEEEEEE
Confidence 99999876542 22222321 223355599999 466778888877888777653
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.80 E-value=0.0082 Score=66.83 Aligned_cols=220 Identities=14% Similarity=0.026 Sum_probs=123.4
Q ss_pred CCCeEEEEECCCCcEEEEEeccC-ccceEE-eccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcCCcccc
Q 000709 31 ASDHVSVWNWEHRQVIYELKAGG-VDQRRL-VGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLWRNRAA 108 (1339)
Q Consensus 31 ~DGtIrIWDl~tg~~l~~~~~~~-~~~i~~-vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l 108 (1339)
.+|+|..||..+|+.+.+..... ...... ...++..+..++ .++.+..||..+++.+
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---------------------~~~~l~~~d~~tG~~~ 59 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---------------------GDGNLYALDAKTGKVL 59 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---------------------TTSEEEEEETTTSEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---------------------CCCEEEEEECCCCCEE
Confidence 37899999999999999997532 222221 112333333332 4778888888777654
Q ss_pred ccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeec-cccccCC-C--CeEEEEEeeccccCCCCEE
Q 000709 109 AAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDI-PKQELDN-K--SLVCMEFLSRSAVGDVPLV 184 (1339)
Q Consensus 109 ~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v-~~~~~h~-~--~V~~vaf~P~s~Spdg~~L 184 (1339)
..... .+ .+...-...++. +++...++.+..+|..+++.... ....... . ......+ ++..+
T Consensus 60 W~~~~--~~----~~~~~~~~~~~~-v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-------~~~~~ 125 (238)
T PF13360_consen 60 WRFDL--PG----PISGAPVVDGGR-VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-------DGDRL 125 (238)
T ss_dssp EEEEC--SS----CGGSGEEEETTE-EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-------ETTEE
T ss_pred EEeec--cc----cccceeeecccc-cccccceeeeEecccCCcceeeeeccccccccccccccCceE-------ecCEE
Confidence 31111 00 011111222332 44444334344679888875432 1111111 1 1222333 47888
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCCe----------eEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceec
Q 000709 185 AFGSSDGVIRVLSMISWKLVRRYTGGHKGSI----------SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELV 254 (1339)
Q Consensus 185 asGs~DgtIrIWDl~t~~~i~~l~~gH~~~V----------~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~ 254 (1339)
+.+..++.|..+|.++|+.+.... .+.... .+-. ...++ .+..++.++.+..+|+.+++.+..
T Consensus 126 ~~~~~~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~-- 198 (238)
T PF13360_consen 126 YVGTSSGKLVALDPKTGKLLWKYP-VGEPRGSSPISSFSDINGSP---VISDG-RVYVSSGDGRVVAVDLATGEKLWS-- 198 (238)
T ss_dssp EEEETCSEEEEEETTTTEEEEEEE-SSTT-SS--EEEETTEEEEE---ECCTT-EEEEECCTSSEEEEETTTTEEEEE--
T ss_pred EEEeccCcEEEEecCCCcEEEEee-cCCCCCCcceeeecccccce---EEECC-EEEEEcCCCeEEEEECCCCCEEEE--
Confidence 999889999999999999988876 333221 1111 22244 777777777544349999874422
Q ss_pred ccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 000709 255 PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELR 302 (1339)
Q Consensus 255 ~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~ 302 (1339)
.. ...+..+ ... ++..|+.++.++.|..||+.+|+.+-
T Consensus 199 ----~~--~~~~~~~-~~~---~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 199 ----KP--ISGIYSL-PSV---DGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ----EC--SS-ECEC-EEC---CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ----ec--CCCccCC-cee---eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 01 1112221 222 56788888899999999999998653
No 302
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.79 E-value=0.00011 Score=81.63 Aligned_cols=210 Identities=12% Similarity=0.130 Sum_probs=128.9
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE--EecCCceee--ccccccC------------CCCeEEEEEeeccccCCC-C
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL--DLVTMRGRD--IPKQELD------------NKSLVCMEFLSRSAVGDV-P 182 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w--D~~t~~~~~--v~~~~~h------------~~~V~~vaf~P~s~Spdg-~ 182 (1339)
...|+++.|...|. ++++|..+|.+++ +-.+..|.. ...++.| ...|..+.|.- +.+ .
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~----~t~r~ 100 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD----DTGRN 100 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec----CCCcc
Confidence 34688999999997 9999988888865 322222221 1112333 23577888852 222 4
Q ss_pred EEEEEECCCcEEEEECCCC-------------------------------------eEE-----EEEecCCCCCeeEEEE
Q 000709 183 LVAFGSSDGVIRVLSMISW-------------------------------------KLV-----RRYTGGHKGSISCLMT 220 (1339)
Q Consensus 183 ~LasGs~DgtIrIWDl~t~-------------------------------------~~i-----~~l~~gH~~~V~sl~w 220 (1339)
.++..+.|.+|++|.+... +.+ +.....|.-.|+++.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS- 179 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS- 179 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee-
Confidence 4666669999999987432 000 111135666677776
Q ss_pred eeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccc-----ccceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 221 FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH-----DGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 221 f~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH-----~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
+..+...++| +.|-.|.+|++.-......+ ..++.| ..-|++..|||. ....+.-.+..|.|++-|+
T Consensus 180 --~NsD~et~lS-aDdLrINLWnl~i~D~sFnI---VDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG~Ikl~Dl 251 (460)
T COG5170 180 --FNSDKETLLS-ADDLRINLWNLEIIDGSFNI---VDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKGEIKLNDL 251 (460)
T ss_pred --ecCchheeee-ccceeeeeccccccCCceEE---EeccCccHHHHHHHHhhcccCHh--HcceEEEecCCCcEEehhh
Confidence 6677777776 56889999998754322211 112333 345889999993 5667777888999999999
Q ss_pred CCCe-eE---EEe----cCC--CcccccCCceeEEEeCCCCCEEEEecCC--eEEEccCC
Q 000709 296 VSFK-EL---RRI----KPV--PKLACHSVASWCHPRAPNLDILTCVKDS--HIWAIEHP 343 (1339)
Q Consensus 296 ~t~~-~l---~~~----~~~--~~l~~H~~~V~svafspdg~iLs~s~Dg--~LWDi~t~ 343 (1339)
+... |. ..+ .++ .-+.+-...|..+.|+++|+++.+-.-. +|||++..
T Consensus 252 Rq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 252 RQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccc
Confidence 8321 00 011 111 1123334567788999999877543223 48999864
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.77 E-value=0.0075 Score=67.57 Aligned_cols=226 Identities=18% Similarity=0.216 Sum_probs=123.4
Q ss_pred eeeCCCCCeEEEEEecCcEEEE-----EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC
Q 000709 126 PPPSTKGRHFLVICCVNKAIFL-----DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS 200 (1339)
Q Consensus 126 lafspdg~~lLasgs~dg~I~w-----D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t 200 (1339)
++.+.+|+ +|++-- |..|.+ |..+-..++ ...+.....-+.++| |||+.+||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk-~lAi~q-d~~iEiRsa~Ddf~si~~kc-qVpkD~~PQWRkl~W-----SpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGK-LLAILQ-DQCIEIRSAKDDFSSIIGKC-QVPKDPNPQWRKLAW-----SPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCc-EEEEEe-ccEEEEEeccCCchheeEEE-ecCCCCCchheEEEE-----CCCCcEEEEEcCCCeEEEEeccc
Confidence 44567887 555544 444433 222221111 122233445677999 89999999999999999999875
Q ss_pred CeEEEEEecCC------CCCeeEEEEeeeCCC---CCEEEEEeCCCcEEEEeCCCCC--ccceecccccccc-cccceEE
Q 000709 201 WKLVRRYTGGH------KGSISCLMTFMASSG---EALLVSGGSDGLLILWSADHGQ--DSRELVPKLSLKA-HDGGVVA 268 (1339)
Q Consensus 201 ~~~i~~l~~gH------~~~V~sl~wf~~spd---g~~LaSgS~DgtVrVWDl~tg~--~~~~~~~~~~l~g-H~~~V~s 268 (1339)
..+..+..++ ...|..+.+.....+ ...|+.-..+|.++-|-+..+. .-++ ...+.+.. +..+|++
T Consensus 75 -~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e-~hsfsf~~~yp~Gi~~ 152 (282)
T PF15492_consen 75 -SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE-NHSFSFSSHYPHGINS 152 (282)
T ss_pred -ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee-eEEEEecccCCCceeE
Confidence 3334443232 234555542111111 2356666788888877764332 1111 12233333 4678999
Q ss_pred EEeeccCCCCCEEEEEeCCCc-----------EEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC--
Q 000709 269 VELSRVMGGSPQLITIGADKT-----------LAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-- 335 (1339)
Q Consensus 269 vafsp~~~dg~~LaSgs~Dg~-----------IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg-- 335 (1339)
+.|+| ..++|+.||.... +.-|.+-+ -+|..+.++..+|.
T Consensus 153 ~vy~p---~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~------------------------~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 153 AVYHP---KHRLLLVGGCEQNQDGMSKASSCGLTAWRILS------------------------DSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEEcC---CCCEEEEeccCCCCCccccccccCceEEEEcC------------------------CCCcEEEccccCcccc
Confidence 99999 5667776664222 11222211 12222222222221
Q ss_pred ------eEEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 336 ------HIWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 336 ------~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
.+|.+-+.. ...........|..|..|| ++.+|++-+.+|.| .+|++......
T Consensus 206 ~~~~~~~~~~~~~~~----------------~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~l-sLW~iPsL~~~ 264 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFK----------------FFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSL-SLWEIPSLRLQ 264 (282)
T ss_pred ccccccceeecccee----------------eeeccccCCCceEEEEECC-CCCEEEEEEcCCeE-EEEecCcchhh
Confidence 133322110 0111122233799999999 68889999999997 79997764433
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.77 E-value=0.00024 Score=91.12 Aligned_cols=166 Identities=17% Similarity=0.039 Sum_probs=127.7
Q ss_pred HhHHHHhcCCHHHHHHHHHhcCchhhHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccC
Q 000709 907 RCRCLAAYGDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIG 986 (1339)
Q Consensus 907 ~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~ 986 (1339)
+|+.-...|+|++|+.-+..++..+.+..-.|.++.|.+.+||.++.-+++.+-+ .....|..+...
T Consensus 886 kF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~---------i~~~ya~hL~~~---- 952 (1265)
T KOG1920|consen 886 KFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKV---------IYEAYADHLREE---- 952 (1265)
T ss_pred heeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHH---------HHHHHHHHHHHh----
Confidence 4666666799999999999999989999999999999999999988553222211 111122222111
Q ss_pred CCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHh
Q 000709 987 QDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRL 1066 (1339)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~ 1066 (1339)
.+|..=+-.+...|+++.|.+||+.+ + |+++++-+.
T Consensus 953 --------------------------------~~~~~Aal~Ye~~GklekAl~a~~~~---~---------dWr~~l~~a 988 (1265)
T KOG1920|consen 953 --------------------------------LMSDEAALMYERCGKLEKALKAYKEC---G---------DWREALSLA 988 (1265)
T ss_pred --------------------------------ccccHHHHHHHHhccHHHHHHHHHHh---c---------cHHHHHHHH
Confidence 48888899999999999999999999 7 777777776
Q ss_pred Hh-cCChhHH----HHHHHHHHHcCCChHHHHHHH-HcCCHHHHHHHHHHcCCchHHHHHHHHhCCCCh
Q 000709 1067 AN-HGELTRL----SGLVTNLISLGLGREAAFSAA-ILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSL 1129 (1339)
Q Consensus 1067 ~~-~g~~~~l----~~l~~~a~~~~~~~~~af~~~-~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~ 1129 (1339)
.. .-..+++ .+|+..+.++++.-.+|=... +++|+++++.+|++.-++.+|.+-|..|+...+
T Consensus 989 ~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 989 AQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 62 2333333 467788888888856665554 999999999999999999999999999996544
No 305
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.70 E-value=0.029 Score=64.64 Aligned_cols=242 Identities=16% Similarity=0.122 Sum_probs=145.6
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCC-eEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEE
Q 000709 12 DKIVKIQLHPTHP-WLVTADASD-HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 12 ~~V~~vafSPdg~-~LaSgs~DG-tIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
.+...++.+|+.. .++.+-.-| ...+||..+++.+..+.... +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~----------g------------------------- 49 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP----------G------------------------- 49 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC----------C-------------------------
Confidence 3556788999544 666666554 57889999988877665221 0
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEe-----cCcEE-EEEecCCceeeccccccC
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-----VNKAI-FLDLVTMRGRDIPKQELD 163 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs-----~dg~I-~wD~~t~~~~~v~~~~~h 163 (1339)
..+.+| -.||+||+ +|.+.- ..|.| +||... ....+..+..+
T Consensus 50 -----------------------RHFyGH-------g~fs~dG~-~LytTEnd~~~g~G~IgVyd~~~-~~~ri~E~~s~ 97 (305)
T PF07433_consen 50 -----------------------RHFYGH-------GVFSPDGR-LLYTTENDYETGRGVIGVYDAAR-GYRRIGEFPSH 97 (305)
T ss_pred -----------------------CEEecC-------EEEcCCCC-EEEEeccccCCCcEEEEEEECcC-CcEEEeEecCC
Confidence 112233 45778887 444442 23455 667762 23445455556
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEEC------------------CCcEEEEECCCCeEEEEEe---cCCCCCeeEEEEee
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSS------------------DGVIRVLSMISWKLVRRYT---GGHKGSISCLMTFM 222 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~------------------DgtIrIWDl~t~~~i~~l~---~gH~~~V~sl~wf~ 222 (1339)
.-....+.+ .|||+.|+.+.- +-++...|..+++.+.+.. .-|.-+|..++
T Consensus 98 GIGPHel~l-----~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa--- 169 (305)
T PF07433_consen 98 GIGPHELLL-----MPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA--- 169 (305)
T ss_pred CcChhhEEE-----cCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE---
Confidence 556667777 567877666531 2346667777888776642 23677888887
Q ss_pred eCCCCCEEEEEeCCCc-------EEEEeCCCCCccceec-ccccccccccceEEEEeeccCCCCCEE-EEEeCCCcEEEE
Q 000709 223 ASSGEALLVSGGSDGL-------LILWSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQL-ITIGADKTLAIW 293 (1339)
Q Consensus 223 ~spdg~~LaSgS~Dgt-------VrVWDl~tg~~~~~~~-~~~~l~gH~~~V~svafsp~~~dg~~L-aSgs~Dg~IrIW 293 (1339)
...+|..++..-..|. |-+++... ....+. +......-.+.+-+|++++ ++.++ +|+-.-+.+.+|
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~---~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADR---DGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeC---CCCEEEEECCCCCEEEEE
Confidence 5777766665544332 33333222 111110 1111234456789999998 66666 555578999999
Q ss_pred ECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEccC
Q 000709 294 DTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH 342 (1339)
Q Consensus 294 Dl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~t 342 (1339)
|..+++.+... .-..+..++..+++ ++.++..|.++.+..
T Consensus 245 d~~tg~~~~~~--------~l~D~cGva~~~~~-f~~ssG~G~~~~~~~ 284 (305)
T PF07433_consen 245 DAATGRLLGSV--------PLPDACGVAPTDDG-FLVSSGQGQLIRLSP 284 (305)
T ss_pred ECCCCCEeecc--------ccCceeeeeecCCc-eEEeCCCccEEEccC
Confidence 99999987652 12344566666666 666666677776664
No 306
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.67 E-value=0.0088 Score=73.12 Aligned_cols=194 Identities=9% Similarity=-0.067 Sum_probs=113.7
Q ss_pred CEEEEEEcCCCCE-EEEEeC---CCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceE
Q 000709 13 KIVKIQLHPTHPW-LVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVK 88 (1339)
Q Consensus 13 ~V~~vafSPdg~~-LaSgs~---DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~ 88 (1339)
.+..-.|||||+. ++..+. +..|.++|+.+|+...-............+||++.|+......
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~-------------- 254 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPK-------------- 254 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccC--------------
Confidence 5678999999984 654433 3578899998887654443222222344568888776543211
Q ss_pred EEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc---EEEEEecCCceeeccccccCCC
Q 000709 89 QVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNK 165 (1339)
Q Consensus 89 sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~ 165 (1339)
.+..|.++|+.+++... +..+ ........|+|||+.++.+....+ +.++|+.+++.+.+.. ...
T Consensus 255 ----g~~~Iy~~dl~~g~~~~-----LT~~-~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~---~g~ 321 (419)
T PRK04043 255 ----GQPDIYLYDTNTKTLTQ-----ITNY-PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF---HGK 321 (419)
T ss_pred ----CCcEEEEEECCCCcEEE-----cccC-CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc---CCC
Confidence 24577778877764321 1111 112234579999985555554333 3355888876644422 111
Q ss_pred CeEEEEEeeccccCCCCEEEEEECC---------CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGSSD---------GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~D---------gtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
. ...| ||||++|+..+.. ..|.+.|+.++.. +.+. .. ....... ++|||+.|+..+.+
T Consensus 322 ~--~~~~-----SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT-~~-~~~~~p~---~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSV-----STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLT-AN-GVNQFPR---FSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceE-----CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECC-CC-CCcCCeE---ECCCCCEEEEEEcc
Confidence 2 2377 8899998877654 2688889887764 3343 22 2222343 69999987765543
Q ss_pred -Cc--EEEEeCCC
Q 000709 237 -GL--LILWSADH 246 (1339)
Q Consensus 237 -gt--VrVWDl~t 246 (1339)
+. +.+.++..
T Consensus 389 ~~~~~L~~~~l~g 401 (419)
T PRK04043 389 GNQSALGIIRLNY 401 (419)
T ss_pred CCcEEEEEEecCC
Confidence 22 44555543
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.63 E-value=0.00061 Score=85.01 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=125.8
Q ss_pred CCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 000709 132 GRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGH 211 (1339)
Q Consensus 132 g~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH 211 (1339)
+..++..|-.+.++.+|.++.+.... .......|.-|.. +++++.+|...|+|.+-|.++.+.++++. .|
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~--~~v~a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~-aH 216 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRT--TNVSASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFD-AH 216 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeee--eeccCCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeee-cc
Confidence 33467777788888889988754332 2223334666666 68999999999999999999999999998 99
Q ss_pred CCCeeEEEEeeeCCCCCEEEEEeC---------CCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEE
Q 000709 212 KGSISCLMTFMASSGEALLVSGGS---------DGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLI 282 (1339)
Q Consensus 212 ~~~V~sl~wf~~spdg~~LaSgS~---------DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~La 282 (1339)
.+.|..+. -.|++|++|+. |..|+|||++.-+.+. | +.-|.+ ..-+.|+|. -...++
T Consensus 217 s~siSDfD-----v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~---P---I~~~~~-P~flrf~Ps--l~t~~~ 282 (1118)
T KOG1275|consen 217 SGSISDFD-----VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS---P---IQFPYG-PQFLRFHPS--LTTRLA 282 (1118)
T ss_pred ccceeeee-----ccCCeEEEeecccccccccccchhhhhhhhhhhccC---C---cccccC-chhhhhccc--ccceEE
Confidence 99998775 47889999976 5568999999866542 1 121222 245788883 456888
Q ss_pred EEeCCCcEEEEECCCCe----eEEEecCCCcccccCCceeEEEeCCCCCEEE-EecCCe--EEE
Q 000709 283 TIGADKTLAIWDTVSFK----ELRRIKPVPKLACHSVASWCHPRAPNLDILT-CVKDSH--IWA 339 (1339)
Q Consensus 283 Sgs~Dg~IrIWDl~t~~----~l~~~~~~~~l~~H~~~V~svafspdg~iLs-~s~Dg~--LWD 339 (1339)
.++..|...+-|..+.. .+.. .......+..+.++++++.++ +-.+|. +|.
T Consensus 283 V~S~sGq~q~vd~~~lsNP~~~~~~------v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 283 VTSQSGQFQFVDTATLSNPPAGVKM------VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEecccceeeccccccCCCccceeE------EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 99999999999943221 1111 122234478899999999775 445564 786
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.62 E-value=0.014 Score=65.52 Aligned_cols=177 Identities=16% Similarity=0.175 Sum_probs=113.4
Q ss_pred CCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccc----cCCCCeEEEEEeeccccCC-CCEEEEEECCCcEE
Q 000709 121 SGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQE----LDNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIR 194 (1339)
Q Consensus 121 ~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~----~h~~~V~~vaf~P~s~Spd-g~~LasGs~DgtIr 194 (1339)
-.-+.++||||+. +|+.+...|.|++ |+....+..++... .-...|..+.|.....++. ...|++-..+|.++
T Consensus 44 PQWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 44 PQWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred chheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 3467899999997 9999999999955 88754443332211 1145778888865322222 23466667888888
Q ss_pred EEECCC-----CeEEE--EEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----------CcEEEEeCCCCCccce----
Q 000709 195 VLSMIS-----WKLVR--RYTGGHKGSISCLMTFMASSGEALLVSGGSD-----------GLLILWSADHGQDSRE---- 252 (1339)
Q Consensus 195 IWDl~t-----~~~i~--~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-----------gtVrVWDl~tg~~~~~---- 252 (1339)
=|-+.. .+... .+...+...|.++. +++..++|+.|+.. .-+..|.+-++..-..
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v---y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAV---YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEE---EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 777532 22222 33334577888886 78888887776542 1366787654321100
Q ss_pred -------------eccccc--c----cccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 000709 253 -------------LVPKLS--L----KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1339)
Q Consensus 253 -------------~~~~~~--l----~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1339)
+..... + ......|..|..+| |+..|++...+|.|.+|++.+.+..+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP---dg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP---DGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECC---CCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 000000 0 12356799999999 8999999999999999999987766654
No 309
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=0.00012 Score=85.93 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=121.9
Q ss_pred ccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCC-c----eeeccccccCCCCeEEEEEeeccccCCCCEEEEEE
Q 000709 115 AVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTM-R----GRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS 188 (1339)
Q Consensus 115 ~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~-~----~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs 188 (1339)
..+| ...|+.++--.+.. -+++++.|+++ .|.++.. . ..+..+...|..+|..+.|+ .+.++++++
T Consensus 731 f~GH-~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-----~~lr~i~Sc- 802 (1034)
T KOG4190|consen 731 FTGH-QEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-----ADLRSIASC- 802 (1034)
T ss_pred ccCc-HHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeee-----eccceeeec-
Confidence 3444 55566665444443 67899999999 6655421 1 11334567899999999994 466677655
Q ss_pred CCCcEEEEECCCCeEEEEEe----cCCCCCeeEEEEeeeCCCCCEEEE-EeCCCcEEEEeCCCCCccceecccccccccc
Q 000709 189 SDGVIRVLSMISWKLVRRYT----GGHKGSISCLMTFMASSGEALLVS-GGSDGLLILWSADHGQDSRELVPKLSLKAHD 263 (1339)
Q Consensus 189 ~DgtIrIWDl~t~~~i~~l~----~gH~~~V~sl~wf~~spdg~~LaS-gS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~ 263 (1339)
||.|.+||.--++.+..+. .+..+.|.|+. +-+..++.. |+...+|+++|.+.+....+++ +..-.+..
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k-Vcna~~Pn 876 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGCSAESTVKLFDARSCEWTCELK-VCNAPGPN 876 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEecc----cCcchheeeeccchhhheeeecccccceeeEE-eccCCCCc
Confidence 7889999987776665442 23345566663 434555544 4889999999999887665542 22234555
Q ss_pred cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecC
Q 000709 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1339)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~ 306 (1339)
.-+.+++..+ .|+.++.+-..|+|.+.|.++|+.+..+++
T Consensus 877 a~~R~iaVa~---~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 877 ALTRAIAVAD---KGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred hheeEEEecc---CcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 6788999988 899999999999999999999998877654
No 310
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.56 E-value=0.061 Score=65.33 Aligned_cols=278 Identities=14% Similarity=0.071 Sum_probs=139.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEc
Q 000709 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQL 102 (1339)
Q Consensus 23 g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl 102 (1339)
+..++.++.+|.|.-+|..+|+.+.+...........- ..+..+. + .-...++.|. +...++.+.-+|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~~~~~~-~--------~~~v~~~~v~-v~~~~g~l~ald~ 137 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSK-NKSALLS-G--------GVTVAGGKVY-IGSEKGQVYALNA 137 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCccccccc-ccccccc-c--------ccEEECCEEE-EEcCCCEEEEEEC
Confidence 56777888899999999999999998875431110000 0000000 0 0000112222 1114678888888
Q ss_pred CCccccccccccccccCCCCeee-eeeCCCCCeEEEEEecCc-EEEEEecCCceeeccccccCCCCeEEEEEeeccccCC
Q 000709 103 WRNRAAAAEAPTAVSNVTSGFAS-PPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD 180 (1339)
Q Consensus 103 ~~~~~l~~~~~~~~~~~~~~V~s-lafspdg~~lLasgs~dg-~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spd 180 (1339)
.+++.+.... .. ..+.+ ... .++ .++++..++ ++.+|..+++..-............. .-.|. -.
T Consensus 138 ~tG~~~W~~~---~~---~~~~ssP~v-~~~--~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~-~~sP~---v~ 204 (394)
T PRK11138 138 EDGEVAWQTK---VA---GEALSRPVV-SDG--LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG-ESAPA---TA 204 (394)
T ss_pred CCCCCccccc---CC---CceecCCEE-ECC--EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC-CCCCE---EE
Confidence 8887653211 11 11111 111 133 344455455 44668888764321111100000000 00110 01
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CCeeEEEEeeeCC--CCCEEEEEeCCCcEEEEeCCCCCccceecc
Q 000709 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK---GSISCLMTFMASS--GEALLVSGGSDGLLILWSADHGQDSRELVP 255 (1339)
Q Consensus 181 g~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~---~~V~sl~wf~~sp--dg~~LaSgS~DgtVrVWDl~tg~~~~~~~~ 255 (1339)
+..++.++.+|.+..+|..+++.+........ ..+..+.-...+| .+..++.++.+|.+..+|..+|+.+.+.
T Consensus 205 ~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-- 282 (394)
T PRK11138 205 FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-- 282 (394)
T ss_pred CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee--
Confidence 34577788899999999998876554421110 0000000000111 2456777788999999999999765431
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC
Q 000709 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg 335 (1339)
.+. ....+.. .+..|+.++.|+.+..+|..+++.+-+... +. +. ...+... -++.++.++.||
T Consensus 283 --~~~----~~~~~~~-----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~-~~-~~~sp~v-~~g~l~v~~~~G 345 (394)
T PRK11138 283 --EYG----SVNDFAV-----DGGRIYLVDQNDRVYALDTRGGVELWSQSD---LL-HR-LLTAPVL-YNGYLVVGDSEG 345 (394)
T ss_pred --cCC----CccCcEE-----ECCEEEEEcCCCeEEEEECCCCcEEEcccc---cC-CC-cccCCEE-ECCEEEEEeCCC
Confidence 111 1111222 345777888999999999999986544211 11 10 1111111 256677788888
Q ss_pred eEE--EccCC
Q 000709 336 HIW--AIEHP 343 (1339)
Q Consensus 336 ~LW--Di~t~ 343 (1339)
.|+ |..++
T Consensus 346 ~l~~ld~~tG 355 (394)
T PRK11138 346 YLHWINREDG 355 (394)
T ss_pred EEEEEECCCC
Confidence 754 54444
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.55 E-value=0.0079 Score=73.53 Aligned_cols=175 Identities=12% Similarity=0.019 Sum_probs=105.7
Q ss_pred CeeeeeeCCCCCeEEEEEecC---cEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-CC--CcEE
Q 000709 122 GFASPPPSTKGRHFLVICCVN---KAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SD--GVIR 194 (1339)
Q Consensus 122 ~V~slafspdg~~lLasgs~d---g~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~D--gtIr 194 (1339)
......|+|||+.+++..+.. ..+ ++|+.+++.+.+.. ..+......| +|||+.++... .+ ..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~-----SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDV-----SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEE-----CCCCCEEEEEEccCCCcEEE
Confidence 566889999998534433322 233 45888887655432 3445566778 88998776543 23 4688
Q ss_pred EEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC--cEEEEeCCCCCccceecccccccccccceEEEEe
Q 000709 195 VLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1339)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dg--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1339)
++|+.+++.. .+. .+........ ++|||+.|+-.+. .+ .|.+.|+.+++..+. +..+. ....|
T Consensus 261 ~~dl~~g~~~-~LT-~~~~~d~~p~---~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl-----t~~g~----~~~~~ 326 (419)
T PRK04043 261 LYDTNTKTLT-QIT-NYPGIDVNGN---FVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV-----VFHGK----NNSSV 326 (419)
T ss_pred EEECCCCcEE-Ecc-cCCCccCccE---ECCCCCEEEEEECCCCCceEEEEECCCCCeEeC-----ccCCC----cCceE
Confidence 8898877643 343 2333222333 6899987776654 23 577788877654221 11221 12489
Q ss_pred eccCCCCCEEEEEeCC---------CcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 272 SRVMGGSPQLITIGAD---------KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 272 sp~~~dg~~LaSgs~D---------g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
+| +++.|+-.+.. ..|.+.|+.++.. +.+ .... ......|+|||+.|
T Consensus 327 SP---DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~L------T~~~-~~~~p~~SPDG~~I 382 (419)
T PRK04043 327 ST---YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRL------TANG-VNQFPRFSSDGGSI 382 (419)
T ss_pred CC---CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EEC------CCCC-CcCCeEECCCCCEE
Confidence 99 78877766543 3678888887764 332 1111 12257899999955
No 312
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.55 E-value=0.00022 Score=56.14 Aligned_cols=39 Identities=38% Similarity=0.644 Sum_probs=35.5
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 201 ~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
|+++..+. +|.+.|++++ ++|++++|++|+.|++|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~---~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIA---WSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEE---EETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEE---EecccccceeeCCCCEEEEEC
Confidence 46778887 9999999998 688999999999999999997
No 313
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.0037 Score=77.73 Aligned_cols=182 Identities=13% Similarity=0.083 Sum_probs=116.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEE
Q 000709 12 DKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 12 ~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
+.++|+++| ++.|+-|.++|.|++.+... .. ++...+. . ...+|.++++++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s-~----~~~~Gey~asCS-------------------- 90 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHS-S----SILEGEYVASCS-------------------- 90 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccc-c----cccCCceEEEec--------------------
Confidence 557788887 67899999999999999653 22 2222111 1 146788999887
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCC-----CCeEEEEEecCcEEEE--EecCCceeeccccccCC
Q 000709 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTK-----GRHFLVICCVNKAIFL--DLVTMRGRDIPKQELDN 164 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspd-----g~~lLasgs~dg~I~w--D~~t~~~~~v~~~~~h~ 164 (1339)
.||.|.+-.+.+.+.. ........+.+++++|+ .+ .+++|+.-|.+.. ++- ++...+ ......
T Consensus 91 -~DGkv~I~sl~~~~~~------~~~df~rpiksial~Pd~~~~~sk-~fv~GG~aglvL~er~wl-gnk~~v-~l~~~e 160 (846)
T KOG2066|consen 91 -DDGKVVIGSLFTDDEI------TQYDFKRPIKSIALHPDFSRQQSK-QFVSGGMAGLVLSERNWL-GNKDSV-VLSEGE 160 (846)
T ss_pred -CCCcEEEeeccCCccc------eeEecCCcceeEEeccchhhhhhh-heeecCcceEEEehhhhh-cCccce-eeecCc
Confidence 4566666555444322 11122456888999997 33 6788888884433 121 111111 234457
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-----CeeEEEEeeeCCCCCEEEEEeCCCcE
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKG-----SISCLMTFMASSGEALLVSGGSDGLL 239 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~-----~V~sl~wf~~spdg~~LaSgS~DgtV 239 (1339)
+.|.++.| .|++|+-++++| |+|||..+++.+..+...|.. .-..+.|. +...|+.|-.| +|
T Consensus 161 G~I~~i~W-------~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~----~~~~LVIGW~d-~v 227 (846)
T KOG2066|consen 161 GPIHSIKW-------RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ----DEDRLVIGWGD-SV 227 (846)
T ss_pred cceEEEEe-------cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEec----CCCeEEEecCC-eE
Confidence 89999999 599999998888 899999998888777644421 12234442 44556665444 78
Q ss_pred EEEeCC
Q 000709 240 ILWSAD 245 (1339)
Q Consensus 240 rVWDl~ 245 (1339)
++..++
T Consensus 228 ~i~~I~ 233 (846)
T KOG2066|consen 228 KICSIK 233 (846)
T ss_pred EEEEEe
Confidence 888877
No 314
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.50 E-value=0.14 Score=60.65 Aligned_cols=345 Identities=12% Similarity=0.066 Sum_probs=193.2
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCcEEEEEecc-CccceEEeccccceeEeeccccC-
Q 000709 5 KAFRPTNDKIVKIQLHPTHPWLVT-------ADASDHVSVWNWEHRQVIYELKAG-GVDQRRLVGAKLEKLAEGELEHK- 75 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~~LaS-------gs~DGtIrIWDl~tg~~l~~~~~~-~~~~i~~vs~d~~~Lasgs~d~~- 75 (1339)
+.+..|-+-|+.-.|+|+|+++|- +.....+.+.+.+.|+..+-.-.+ ....+.-..++++.+++...-..
T Consensus 72 ~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF 151 (668)
T COG4946 72 LRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFGRRFTRVAGWIPDGEIIVSTDFHTPF 151 (668)
T ss_pred eEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEeccccceeeccCCCCCEEEEeccCCCc
Confidence 456678888999999999998885 233456888888998876544332 22233333488888887643221
Q ss_pred ------------CCccccccCCceEEEEEcCCeEEE----EEcCCccccccccccccccCCCC-------------eeee
Q 000709 76 ------------GKPTEAMRGGSVKQVNFYDDDVRF----WQLWRNRAAAAEAPTAVSNVTSG-------------FASP 126 (1339)
Q Consensus 76 ------------gk~~~~l~~g~V~sVaF~Dg~Irl----WDl~~~~~l~~~~~~~~~~~~~~-------------V~sl 126 (1339)
+--..-+.-|+...+.+.||.+.+ +|+...+ ...+...+. +-++
T Consensus 152 ~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK-------~YkGGtrGklWis~d~g~tFeK~vdl 224 (668)
T COG4946 152 SQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWK-------GYKGGTRGKLWISSDGGKTFEKFVDL 224 (668)
T ss_pred ccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccc-------cccCCccceEEEEecCCcceeeeeec
Confidence 111122233677777777775554 2221111 111110000 0000
Q ss_pred eeCCCCC-----eEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 127 PPSTKGR-----HFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 127 afspdg~-----~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
.=+-..+ ++......+| +...|+... ++ ..|... -.+-|+..+.||+.|+.. ..|.|.+||.
T Consensus 225 ~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGk---Dl---rrHTnF---tdYY~R~~nsDGkrIvFq-~~GdIylydP 294 (668)
T COG4946 225 DGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGK---DL---RRHTNF---TDYYPRNANSDGKRIVFQ-NAGDIYLYDP 294 (668)
T ss_pred CCCcCCceEEcceEEEEecccCccceEEeccCCc---hh---hhcCCc---hhccccccCCCCcEEEEe-cCCcEEEeCC
Confidence 0000000 0111111111 111122221 11 112110 112233336789888765 6788999999
Q ss_pred CCCeEEEEEecCC--------CCCeeEEEE--eeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEE
Q 000709 199 ISWKLVRRYTGGH--------KGSISCLMT--FMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVA 268 (1339)
Q Consensus 199 ~t~~~i~~l~~gH--------~~~V~sl~w--f~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~s 268 (1339)
.+.+.. .+.-+. ...+.-..+ .+...+|++++..|. |...+.+...+-.++ .+|.++|.-
T Consensus 295 ~td~le-kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--------v~~~~~VrY 364 (668)
T COG4946 295 ETDSLE-KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--------VGKKGGVRY 364 (668)
T ss_pred CcCcce-eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE--------cCCCCceEE
Confidence 875432 222120 001111110 012346788887774 566666665554332 467888888
Q ss_pred EEeeccCCCCCEEEEEeCCC-cEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-eEE--EccCCc
Q 000709 269 VELSRVMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIW--AIEHPT 344 (1339)
Q Consensus 269 vafsp~~~dg~~LaSgs~Dg-~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg-~LW--Di~t~~ 344 (1339)
..+.. +..-++.|..|| .+-|+|..+++.-+. ...-+.|.++..+++|+.+..+.|. .|| |+.++.
T Consensus 365 ~r~~~---~~e~~vigt~dgD~l~iyd~~~~e~kr~-------e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 365 RRIQV---DPEGDVIGTNDGDKLGIYDKDGGEVKRI-------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred EEEcc---CCcceEEeccCCceEEEEecCCceEEEe-------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 78776 667889999999 899999998875443 4556788999999999988777776 466 555542
Q ss_pred ccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeE---EEEecCCCC
Q 000709 345 YSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVI---ISEFDPRSL 403 (1339)
Q Consensus 345 ~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~I---lriWd~~~~ 403 (1339)
...+.......|+..+||| ++..+|-+--+|.+ ++++|+...
T Consensus 435 ----------------v~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 435 ----------------VRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ----------------eeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCC
Confidence 1222223333799999999 67778888777753 267777653
No 315
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.47 E-value=0.002 Score=80.66 Aligned_cols=192 Identities=14% Similarity=0.189 Sum_probs=131.1
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccc
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL 259 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l 259 (1339)
++..++.|+....+..+|+++.+..+... -..+.|.-++ .+++.+.+|...|+|.+-|.++-+.+++ +
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR-----~Nnr~lf~G~t~G~V~LrD~~s~~~iht------~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMR-----YNNRNLFCGDTRGTVFLRDPNSFETIHT------F 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEE-----ecCcEEEeecccceEEeecCCcCceeee------e
Confidence 45567778777788899999888777664 3333466554 4788999999999999999998876665 7
Q ss_pred cccccceEEEEeeccCCCCCEEEEEeC---------CCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCC--E
Q 000709 260 KAHDGGVVAVELSRVMGGSPQLITIGA---------DKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLD--I 328 (1339)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~---------Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~--i 328 (1339)
..|++.|..+..+ |+.|+++|. |.-|+|||++..+.+.- + .-+-++ .-+.|+|.-. +
T Consensus 214 ~aHs~siSDfDv~-----GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P---I---~~~~~P-~flrf~Psl~t~~ 281 (1118)
T KOG1275|consen 214 DAHSGSISDFDVQ-----GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP---I---QFPYGP-QFLRFHPSLTTRL 281 (1118)
T ss_pred eccccceeeeecc-----CCeEEEeecccccccccccchhhhhhhhhhhccCC---c---ccccCc-hhhhhcccccceE
Confidence 8999999887764 678888875 55689999987665433 2 222222 2466777633 4
Q ss_pred EEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEEEEecCCCCCCc
Q 000709 329 LTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAV 406 (1339)
Q Consensus 329 Ls~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~IlriWd~~~~p~i 406 (1339)
+.++..|. +-|..+. +++. .....+...+. .+..+++++ ++..++.|..+|.| .+|.-+..|.+
T Consensus 282 ~V~S~sGq~q~vd~~~l-----sNP~------~~~~~v~p~~s-~i~~fDiSs-n~~alafgd~~g~v-~~wa~~~~P~F 347 (1118)
T KOG1275|consen 282 AVTSQSGQFQFVDTATL-----SNPP------AGVKMVNPNGS-GISAFDISS-NGDALAFGDHEGHV-NLWADRPQPQF 347 (1118)
T ss_pred EEEecccceeecccccc-----CCCc------cceeEEccCCC-cceeEEecC-CCceEEEecccCcE-eeecCCCCCcc
Confidence 55666664 4442211 1110 11223344444 589999999 67789999999997 89987776665
Q ss_pred ccc
Q 000709 407 APL 409 (1339)
Q Consensus 407 ~~~ 409 (1339)
...
T Consensus 348 n~~ 350 (1118)
T KOG1275|consen 348 NEY 350 (1118)
T ss_pred CCC
Confidence 543
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.39 E-value=0.058 Score=60.90 Aligned_cols=223 Identities=13% Similarity=-0.007 Sum_probs=122.1
Q ss_pred eeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE
Q 000709 125 SPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL 203 (1339)
Q Consensus 125 slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~ 203 (1339)
++.|.+....++++...++.| +|+..++..... .. .....+.++ .+++ .++.+..++ +.++|+.+++.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~---~~--~~~~G~~~~----~~~g-~l~v~~~~~-~~~~d~~~g~~ 72 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI---DL--PGPNGMAFD----RPDG-RLYVADSGG-IAVVDPDTGKV 72 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE---ES--SSEEEEEEE----CTTS-EEEEEETTC-EEEEETTTTEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE---ec--CCCceEEEE----ccCC-EEEEEEcCc-eEEEecCCCcE
Confidence 456777444477777666655 788887654221 11 227777773 1454 455554544 56669998855
Q ss_pred EEEEec---C-CCCCeeEEEEeeeCCCCCEEEEEeCC--------CcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000709 204 VRRYTG---G-HKGSISCLMTFMASSGEALLVSGGSD--------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1339)
Q Consensus 204 i~~l~~---g-H~~~V~sl~wf~~spdg~~LaSgS~D--------gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1339)
...... . .....+.++ +.++|++.++.... |.|..++.. ++... +...-...+.++|
T Consensus 73 ~~~~~~~~~~~~~~~~ND~~---vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-------~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 73 TVLADLPDGGVPFNRPNDVA---VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-------VADGLGFPNGIAF 141 (246)
T ss_dssp EEEEEEETTCSCTEEEEEEE---E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------EEEEESSEEEEEE
T ss_pred EEEeeccCCCcccCCCceEE---EcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------EecCcccccceEE
Confidence 443331 1 334566675 79999988877654 456666666 33211 1223345789999
Q ss_pred eccCCCCCEE-EEEeCCCcEEEEECCCCee-EEEecCCCcccccCCceeEEEeCCCCCEEEEe-cCCeEEEccCCccccc
Q 000709 272 SRVMGGSPQL-ITIGADKTLAIWDTVSFKE-LRRIKPVPKLACHSVASWCHPRAPNLDILTCV-KDSHIWAIEHPTYSAL 348 (1339)
Q Consensus 272 sp~~~dg~~L-aSgs~Dg~IrIWDl~t~~~-l~~~~~~~~l~~H~~~V~svafspdg~iLs~s-~Dg~LWDi~t~~~~~~ 348 (1339)
+| +++.| ++-+..+.|..|++..... +...+....+.......-.+++..+|.+.++. ..+.|+.++.. .
T Consensus 142 s~---dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G--- 214 (246)
T PF08450_consen 142 SP---DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G--- 214 (246)
T ss_dssp ET---TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---
T ss_pred CC---cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---
Confidence 99 67655 5677888999998853221 21111111112222335678898898866554 44566554421 0
Q ss_pred ccCccccCCCCCCeEEccCCcccEEEEEEe-cCCCcEEEE
Q 000709 349 TRPLCELSSLVPPQVLAHHKKLRVYCMVAH-SLQPHLVAT 387 (1339)
Q Consensus 349 ~~~l~~~~~~~~~~tl~~~~~~~I~~la~s-p~~~~lLat 387 (1339)
.....+..... .+++++|. ++...+++|
T Consensus 215 ----------~~~~~i~~p~~-~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 215 ----------KLLREIELPVP-RPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ----------CEEEEEE-SSS-SEEEEEEESTTSSEEEEE
T ss_pred ----------cEEEEEcCCCC-CEEEEEEECCCCCEEEEE
Confidence 11222332323 68888885 433444444
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.35 E-value=0.022 Score=63.37 Aligned_cols=190 Identities=14% Similarity=0.040 Sum_probs=104.9
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000709 22 THPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1339)
Q Consensus 22 dg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWD 101 (1339)
++.++++++.++.|..||..+|+.+.++..........+..++..++. ..++.+..+|
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~----------------------~~~~~l~~~d 92 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVG----------------------TSDGSLYALD 92 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEE----------------------ETTSEEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccc----------------------cceeeeEecc
Confidence 566777888999999999999999999885322111111122222211 1466788888
Q ss_pred cCCccccccc-cccccccCCCCeeeeeeCCCCCeEEEEEecCc-EEEEEecCCceeeccccccCC--CC------e-EEE
Q 000709 102 LWRNRAAAAE-APTAVSNVTSGFASPPPSTKGRHFLVICCVNK-AIFLDLVTMRGRDIPKQELDN--KS------L-VCM 170 (1339)
Q Consensus 102 l~~~~~l~~~-~~~~~~~~~~~V~slafspdg~~lLasgs~dg-~I~wD~~t~~~~~v~~~~~h~--~~------V-~~v 170 (1339)
..+++.+... .... .. ...........++. .++++..++ ++.+|..+++........... .. + ..+
T Consensus 93 ~~tG~~~W~~~~~~~-~~-~~~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 93 AKTGKVLWSIYLTSS-PP-AGVRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TTTSCEEEEEEE-SS-CT-CSTB--SEEEEETT-EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEE
T ss_pred cCCcceeeeeccccc-cc-cccccccCceEecC-EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccce
Confidence 8777765421 1110 00 01111222222355 555565444 446699888653221111111 11 1 122
Q ss_pred EEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 000709 171 EFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1339)
Q Consensus 171 af~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~ 250 (1339)
.+ .++ .+..++.++.+.-+|..+++.+-... ...+..+ ....+..|+.++.++.|..||+.+|+.+
T Consensus 170 ~~------~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~----~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 170 VI------SDG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL----PSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EC------CTT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC----EECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred EE------ECC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC----ceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 22 234 77777777754444999998664322 2223332 2346777887779999999999999754
No 318
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.017 Score=72.44 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=124.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEEEEcCC
Q 000709 18 QLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDD 95 (1339)
Q Consensus 18 afSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg 95 (1339)
+|++.+..++.|+.+|.|.+.|- .-+.++.|+.+..+.+..+- .....|++...|..+. ..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~n----------------p~ 92 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGN----------------PV 92 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCC----------------ce
Confidence 35678889999999999888873 34555777766544344443 2224666655443221 12
Q ss_pred eEEEEEcCCcc------ccc--cccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE---EecCCceeeccccccCC
Q 000709 96 DVRFWQLWRNR------AAA--AEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL---DLVTMRGRDIPKQELDN 164 (1339)
Q Consensus 96 ~IrlWDl~~~~------~l~--~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w---D~~t~~~~~v~~~~~h~ 164 (1339)
.+++|++...+ |+. ............++.+++.+.+-+ .+|+|-.||.|.. |+...+...........
T Consensus 93 llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~ 171 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK 171 (933)
T ss_pred EEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCC
Confidence 78999986542 210 001111111255788889998876 8999999999844 65443333333334457
Q ss_pred CCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeC
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSA 244 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl 244 (1339)
.+|+.+.+ ..++..++....-..|.+|.+....+.......|...++|.. +++....|++++ +..|.+||.
T Consensus 172 ~pITgL~~-----~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss---~~~~t~qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 172 EPITGLAL-----RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS---FSDGTYQFICAG-SEFLYFYDS 242 (933)
T ss_pred CCceeeEE-----ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee---cCCCCccEEEec-CceEEEEcC
Confidence 89999999 456666344445567999999854433332337788888886 454444344433 457899988
Q ss_pred CCCC
Q 000709 245 DHGQ 248 (1339)
Q Consensus 245 ~tg~ 248 (1339)
...+
T Consensus 243 d~~~ 246 (933)
T KOG2114|consen 243 DGRG 246 (933)
T ss_pred CCcc
Confidence 7443
No 319
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.011 Score=73.78 Aligned_cols=187 Identities=17% Similarity=0.196 Sum_probs=124.3
Q ss_pred CCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000709 121 SGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 121 ~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~ 199 (1339)
..++|++++. .+++-|..+|.+.. +.. +.. .....|... ..+|.++++||.||+|.|..+-
T Consensus 40 D~is~~av~~---~~~~~GtH~g~v~~~~~~-~~~---~~~~~~s~~-----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 40 DAISCCAVHD---KFFALGTHRGAVYLTTCQ-GNP---KTNFDHSSS-----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hHHHHHHhhc---ceeeeccccceEEEEecC-Ccc---ccccccccc-----------ccCCceEEEecCCCcEEEeecc
Confidence 3456666653 38899999998865 332 221 111222211 2479999999999999999998
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCC-----CCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeecc
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSG-----EALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spd-----g~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
+.+...++. ...++.+++ ++|+ .+.+++|+.-| +.++.-+--.... ...+..-.+.|.++.|.
T Consensus 102 ~~~~~~~~d--f~rpiksia---l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~----~v~l~~~eG~I~~i~W~-- 169 (846)
T KOG2066|consen 102 TDDEITQYD--FKRPIKSIA---LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD----SVVLSEGEGPIHSIKWR-- 169 (846)
T ss_pred CCccceeEe--cCCcceeEE---eccchhhhhhhheeecCcce-EEEehhhhhcCcc----ceeeecCccceEEEEec--
Confidence 887766663 667888886 6766 57899999988 7776543211111 11355567889999997
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC-eEEEcc
Q 000709 275 MGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS-HIWAIE 341 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg-~LWDi~ 341 (1339)
+++|+-++++| |++||..+++.+..+.+..........-..+.|.++.+++.|-.|. +|..++
T Consensus 170 ---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 170 ---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ---CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEe
Confidence 46888888776 5999999998887765544222222233468898888777765554 355555
No 320
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.27 E-value=0.067 Score=69.75 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=72.4
Q ss_pred EEEEeeccccCCCCEEEEEE-----CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE---eCCCcEE
Q 000709 169 CMEFLSRSAVGDVPLVAFGS-----SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG---GSDGLLI 240 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs-----~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg---S~DgtVr 240 (1339)
.|.| -.||.++++.. ....|+|||-+ +..-. ....-.+.-.++.| -|.|.++++- +.|+.|.
T Consensus 200 ~IsW-----RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 200 SISW-----RGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-TSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred eEEE-----ccCCcEEEEEEEeccCCceeEEEeccc-chhhc-ccCcccccccceee---cCCCCeEeeeeecCCCCcEE
Confidence 4777 67999998832 33789999976 43322 21123344456665 5688888874 3466899
Q ss_pred EEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEE---EeCCCcEEEEECCCCe
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLIT---IGADKTLAIWDTVSFK 299 (1339)
Q Consensus 241 VWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaS---gs~Dg~IrIWDl~t~~ 299 (1339)
++.-+.-. -.++... +......|..++|+. ++..|++ ......|++|-+.+..
T Consensus 270 ffErNGL~-hg~f~l~--~p~de~~ve~L~Wns---~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 270 FFERNGLR-HGEFVLP--FPLDEKEVEELAWNS---NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred EEecCCcc-ccccccC--CcccccchheeeecC---CCCceeeeecccccceEEEEEecCeE
Confidence 99865322 2222111 222334489999998 7888887 4455569999987754
No 321
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.26 E-value=0.032 Score=68.98 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=84.6
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce-eccc
Q 000709 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE-LVPK 256 (1339)
Q Consensus 178 Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~-~~~~ 256 (1339)
+..+.+++.|++-|.+++|+-..++....-. +-...+.++. ..+++..++|.|+..|.|.++-++.+..-.. +...
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-~~~~~~~~~~--~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-EGATGITCVR--SVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccc-cCccceEEEE--EecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 4478999999999999999977665544333 2345555554 3788999999999999999998876432111 0001
Q ss_pred ccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 257 LSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 257 ~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
. -+.|...|++++|++ ++..+.+|...|+|..-.+.+
T Consensus 119 ~-d~~~~~rVTal~Ws~---~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 119 C-DKSHKCRVTALEWSK---NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred c-cccCCceEEEEEecc---cccEEeecCCCceEEEEEech
Confidence 1 134788999999999 899999999999999888776
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0057 Score=70.81 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=51.8
Q ss_pred eEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-cccceeEeec
Q 000709 4 LKAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGE 71 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-~d~~~Lasgs 71 (1339)
++.+.+|...|..++|||... ++..++.+.+|+|.|+++..++..+..+..-+..+.+ .+..++..|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec
Confidence 345678888999999999888 7889999999999999999988888766544444444 3344555543
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.042 Score=60.62 Aligned_cols=267 Identities=14% Similarity=0.095 Sum_probs=134.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec-cccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEE
Q 000709 23 HPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG-AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQ 101 (1339)
Q Consensus 23 g~~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs-~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWD 101 (1339)
|++++.|+..|.+.+-+..+|..++.+.....-.+.... .++..+..|+ +|+.....|
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs---------------------hd~~~yalD 121 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS---------------------HDGNFYALD 121 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec---------------------CCCcEEEec
Confidence 567888889999999999999888877755444444333 6666666665 577777778
Q ss_pred cCCccccccccccccccCCCCeeeeeeCC-CCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEE-EEeeccccC
Q 000709 102 LWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCM-EFLSRSAVG 179 (1339)
Q Consensus 102 l~~~~~l~~~~~~~~~~~~~~V~slafsp-dg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~v-af~P~s~Sp 179 (1339)
..+..++.+ ...+ .....+-+..+ ++. +.++...+..+..+.+......+ .......+|..- .+
T Consensus 122 ~~~~~cVyk---skcg--G~~f~sP~i~~g~~s-ly~a~t~G~vlavt~~~~~~~~~-w~~~~~~PiF~splc------- 187 (354)
T KOG4649|consen 122 PKTYGCVYK---SKCG--GGTFVSPVIAPGDGS-LYAAITAGAVLAVTKNPYSSTEF-WAATRFGPIFASPLC------- 187 (354)
T ss_pred ccccceEEe---cccC--CceeccceecCCCce-EEEEeccceEEEEccCCCCccee-hhhhcCCccccCcee-------
Confidence 777766642 1111 22233344455 443 55554445555655444321111 001112222211 01
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC--------cEEEEeCCCCCccc
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG--------LLILWSADHGQDSR 251 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg--------tVrVWDl~tg~~~~ 251 (1339)
-+..+..++-||.+.-+| ..|+.+.++ ...++|..-- ....|..+.+..+..+. .-.+|..++|...+
T Consensus 188 v~~sv~i~~VdG~l~~f~-~sG~qvwr~--~t~GpIf~~P-c~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t~~ 263 (354)
T KOG4649|consen 188 VGSSVIITTVDGVLTSFD-ESGRQVWRP--ATKGPIFMEP-CESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTTLH 263 (354)
T ss_pred ccceEEEEEeccEEEEEc-CCCcEEEee--cCCCceeccc-ccCCCcceEEEEecCCeEEEeccccceEEEEecCCcEEE
Confidence 145666677788888777 556666655 3444543221 11123333444443332 23456666654332
Q ss_pred ee-cccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC---------CCeeEEEecCCCcccccCCceeEEE
Q 000709 252 EL-VPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV---------SFKELRRIKPVPKLACHSVASWCHP 321 (1339)
Q Consensus 252 ~~-~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~---------t~~~l~~~~~~~~l~~H~~~V~sva 321 (1339)
.+ .++..+.-|+-.+. ..+++..++.||++.|.-.+ .++ ++.+.. + .-.+.|.+-.
T Consensus 264 vy~~p~l~F~~h~~~~S---------~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~-lq~~~~---~-el~~eIFsSP 329 (354)
T KOG4649|consen 264 VYLSPKLRFDLHSPGIS---------YPKLLRRSSGDGKVMILMTSKSLAEISSNGGE-LQNLEA---I-ELSNEIFSSP 329 (354)
T ss_pred EEeCcccceeccCCCCc---------chhhhhhhcCCCcEEEEEecccccccccCCCc-cceEEE---e-ecCcccccCC
Confidence 21 12222222322111 13567778889999887443 222 111100 0 1111222211
Q ss_pred eCCCCCEEEEecCCe--EEEccC
Q 000709 322 RAPNLDILTCVKDSH--IWAIEH 342 (1339)
Q Consensus 322 fspdg~iLs~s~Dg~--LWDi~t 342 (1339)
.--+|+++.+++|.. -||+.+
T Consensus 330 vii~grl~igcRDdYv~cldl~~ 352 (354)
T KOG4649|consen 330 VIIDGRLLIGCRDDYVRCLDLDT 352 (354)
T ss_pred eEEccEEEEEEccCeEEEEeccc
Confidence 112577888888886 477664
No 324
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.24 E-value=0.00014 Score=87.61 Aligned_cols=214 Identities=16% Similarity=0.177 Sum_probs=136.0
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCCeeEEEEeeeCCCCCEEEEEeC----CCc
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV-RRYTGGHKGSISCLMTFMASSGEALLVSGGS----DGL 238 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i-~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~----Dgt 238 (1339)
..++.|+++.. ..+...++.|..+|.|-+-.++...-- ..+..+|..+.++++| ..-|.++||.|-. |..
T Consensus 56 tqy~kcva~~y---~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAw--neLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 56 TQYVKCVASFY---GNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAW--NELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCCceeehhhc---CCchhhhhhccccCceEEeecCCcccccceeccccccccccccc--ccccHHHHHhhhhhhcccCC
Confidence 45788888743 234568899999999999988754332 4444589999999996 4557778887743 567
Q ss_pred EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCcee
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASW 318 (1339)
Q Consensus 239 VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~ 318 (1339)
+.+||+.++-.+..-.+.+.- +...+.++++|-. +.+++++|...+.++++|++-... +. ..-.+..+.
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlr---d~klvlaGm~sr~~~ifdlRqs~~-~~------~svnTk~vq 199 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLR---DTKLVLAGMTSRSVHIFDLRQSLD-SV------SSVNTKYVQ 199 (783)
T ss_pred ccceecccccCCCcccccccc-ccccCcccccccc---Ccchhhcccccchhhhhhhhhhhh-hh------hhhhhhhcc
Confidence 999999887321110111111 2445567888886 788999999999999999972111 10 112233444
Q ss_pred EEEeCC-CCCEEEEecCCe--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 319 CHPRAP-NLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 319 svafsp-dg~iLs~s~Dg~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
.+..+| .+.+++...|+. +||.... ...++..... -....-.++..++|+|....++++...|..++
T Consensus 200 G~tVdp~~~nY~cs~~dg~iAiwD~~rn----ienpl~~i~~------~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNSDGDIAIWDTYRN----IENPLQIILR------NENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred cceecCCCCCceeccccCceeeccchhh----hccHHHHHhh------CCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 566677 556777666774 8993211 1111111000 00001115889999998888888888777667
Q ss_pred EEecCCCC
Q 000709 396 SEFDPRSL 403 (1339)
Q Consensus 396 riWd~~~~ 403 (1339)
+++|+...
T Consensus 270 rlydi~~v 277 (783)
T KOG1008|consen 270 RLYDICVV 277 (783)
T ss_pred EEeccccc
Confidence 99988754
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0028 Score=74.02 Aligned_cols=173 Identities=14% Similarity=0.055 Sum_probs=112.1
Q ss_pred CCeeeeeeCCCCCeEEEEEec-CcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCC-C--CEEEEEECCCcEEE
Q 000709 121 SGFASPPPSTKGRHFLVICCV-NKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGD-V--PLVAFGSSDGVIRV 195 (1339)
Q Consensus 121 ~~V~slafspdg~~lLasgs~-dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spd-g--~~LasGs~DgtIrI 195 (1339)
..|.+++.+-++. ++.+.++ |+.++. |+.+...........-.+. +.|.. ++. - ..-++.-.++.|.+
T Consensus 54 ~~I~sl~~S~dg~-L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~---a~wv~---skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 54 GVILSLAVSYDGW-LFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF---AEWVT---SKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred HHHHhhhccccce-eEeeccCcccceeEEEeeccchhhhcccccCCCc---eEEec---CCCCeeeeEEeecccCCCcEE
Confidence 3455666667774 7777677 888855 7665432211111222223 33321 121 1 22233347899999
Q ss_pred EECCCCe-EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC------CCccceec---ccccccccccc
Q 000709 196 LSMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH------GQDSRELV---PKLSLKAHDGG 265 (1339)
Q Consensus 196 WDl~t~~-~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t------g~~~~~~~---~~~~l~gH~~~ 265 (1339)
+|-.... ....+..-|..+|.++. +.+.+..++|....|.|.-|.... ......++ ..+.+......
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~---y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~ 203 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIR---YNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTE 203 (558)
T ss_pred ECCcCCcCccceecccccCceEEEE---eeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccC
Confidence 9987554 33444457999999996 788899999999999999998873 11111111 11222334556
Q ss_pred eEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecC
Q 000709 266 VVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKP 306 (1339)
Q Consensus 266 V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~ 306 (1339)
..++.|+| ++..+.+-+.|..|++++..+++.++.+..
T Consensus 204 pts~Efsp---~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 204 PTSFEFSP---DGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccceEEcc---ccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 78999999 889999999999999999999998887643
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.04 E-value=0.29 Score=56.57 Aligned_cols=204 Identities=11% Similarity=0.046 Sum_probs=123.7
Q ss_pred eeeeeeCCCCCeEEEEEecCcEE--EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-----CCCcEEE
Q 000709 123 FASPPPSTKGRHFLVICCVNKAI--FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-----SDGVIRV 195 (1339)
Q Consensus 123 V~slafspdg~~lLasgs~dg~I--~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-----~DgtIrI 195 (1339)
...++.+|.....++.+..-+.. +||..+++.............--...| |+||++|++.- ..|.|-|
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~f-----s~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVF-----SPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEE-----cCCCCEEEEeccccCCCcEEEEE
Confidence 45678889666688888877766 559988865432221111222334567 88999999864 3578999
Q ss_pred EECC-CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe------------------CCCcEEEEeCCCCCccceeccc
Q 000709 196 LSMI-SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG------------------SDGLLILWSADHGQDSRELVPK 256 (1339)
Q Consensus 196 WDl~-t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS------------------~DgtVrVWDl~tg~~~~~~~~~ 256 (1339)
||.. +.+.+..+. .|.-.-..+. ..+|++.|+.+- .+-.+.+-|..+|+.+.+
T Consensus 82 yd~~~~~~ri~E~~-s~GIGPHel~---l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q---- 153 (305)
T PF07433_consen 82 YDAARGYRRIGEFP-SHGIGPHELL---LMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ---- 153 (305)
T ss_pred EECcCCcEEEeEec-CCCcChhhEE---EcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeee----
Confidence 9998 667777776 5554444554 578887766642 123455566677765543
Q ss_pred ccc--cccccceEEEEeeccCCCCCEEEEEeCCC-------cEEEEECCCCeeEEEecCCC-cccccCCceeEEEeCCCC
Q 000709 257 LSL--KAHDGGVVAVELSRVMGGSPQLITIGADK-------TLAIWDTVSFKELRRIKPVP-KLACHSVASWCHPRAPNL 326 (1339)
Q Consensus 257 ~~l--~gH~~~V~svafsp~~~dg~~LaSgs~Dg-------~IrIWDl~t~~~l~~~~~~~-~l~~H~~~V~svafspdg 326 (1339)
..+ .-|...+..+++.+ ++..++..-..| .|-+++. ++.++.+.... ....-.+-+-+|++++++
T Consensus 154 ~~Lp~~~~~lSiRHLa~~~---~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g 228 (305)
T PF07433_consen 154 VELPPDLHQLSIRHLAVDG---DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDG 228 (305)
T ss_pred eecCccccccceeeEEecC---CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCC
Confidence 234 44777899999988 555554443332 2333333 23233222111 112334556799999999
Q ss_pred CEEE-Ee-cCCe--EEEccCCc
Q 000709 327 DILT-CV-KDSH--IWAIEHPT 344 (1339)
Q Consensus 327 ~iLs-~s-~Dg~--LWDi~t~~ 344 (1339)
.+++ +| .-+. +||..++.
T Consensus 229 ~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 229 RLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CEEEEECCCCCEEEEEECCCCC
Confidence 8664 34 3333 89998764
No 327
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.04 E-value=0.044 Score=66.33 Aligned_cols=277 Identities=13% Similarity=0.159 Sum_probs=132.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEE
Q 000709 13 KIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIY-ELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~-~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
.|+++.|.++..-|+.|...|.|.||.+...+.-. .-...+.+. ..+.+- .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~------~~~~~~--~-------------------- 54 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDY------NFRRFS--L-------------------- 54 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------------S----G--------------------
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCc------cccccc--c--------------------
Confidence 58999999998899999999999999987543322 000000000 000000 0
Q ss_pred EcCCeEEEEEcCCc---cccccccc-cccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeecccc------
Q 000709 92 FYDDDVRFWQLWRN---RAAAAEAP-TAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQ------ 160 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~---~~l~~~~~-~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~------ 160 (1339)
.++.-.+-|+... .......+ .......+.|++++.|.-| ++++|..+|.+ ++|++..........
T Consensus 55 -~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~ 131 (395)
T PF08596_consen 55 -NNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLS 131 (395)
T ss_dssp -GGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-
T ss_pred -cCCCcceEEehhhCCcccccccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccc
Confidence 0011111121110 00000001 1111225679999998666 99999999987 559976544322111
Q ss_pred ccCCCCeEEEEEeeccccCCC---CEEEEEECCCcEEEEECC--C-CeEEEEEe---cCCCCCeeEEEEeeeCCCC----
Q 000709 161 ELDNKSLVCMEFLSRSAVGDV---PLVAFGSSDGVIRVLSMI--S-WKLVRRYT---GGHKGSISCLMTFMASSGE---- 227 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg---~~LasGs~DgtIrIWDl~--t-~~~i~~l~---~gH~~~V~sl~wf~~spdg---- 227 (1339)
......|+++.|.......|+ -.+++|++.|.+.+|.+. . +.....+. ..|.+.|..+.-+ ...+|
T Consensus 132 ~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i-~~~~G~~a~ 210 (395)
T PF08596_consen 132 KSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPI-NADTGESAL 210 (395)
T ss_dssp SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEE-ETTT--B-B
T ss_pred cccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEE-ECCCCCccc
Confidence 223568999999653222343 578899999999999874 1 22221111 2567788777632 12211
Q ss_pred ---------------CEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccC--CCCCEEEEEeCCCcE
Q 000709 228 ---------------ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVM--GGSPQLITIGADKTL 290 (1339)
Q Consensus 228 ---------------~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~--~dg~~LaSgs~Dg~I 290 (1339)
+-++....+..+|++...+.+..+.. +. ..-....+.+-+.. ..+..|++-..+|.|
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~-----~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i 284 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKS-----FD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSI 284 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE------S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEE
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccccee-----ec-cccccceEEEEeecccCCceEEEEEECCCcE
Confidence 23444556788999998877655431 11 11112233342100 146688888999999
Q ss_pred EEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 291 AIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 291 rIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
++|.+-.-+.+...+.... .+...+....++++|+++
T Consensus 285 ~i~SLP~Lkei~~~~l~~~--~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 285 RIYSLPSLKEIKSVSLPPP--LDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp EEEETTT--EEEEEE-SS-----HHHHTT-EE-TTS-EE
T ss_pred EEEECCCchHhhcccCCCc--cccccccccEECCCCCEE
Confidence 9999999888877543211 122233355667888866
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.00 E-value=0.14 Score=62.69 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=68.3
Q ss_pred EEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000709 194 RVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1339)
Q Consensus 194 rIWDl~t~--~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1339)
.+|+.... +++....-.....|.|++ .+|+...|+.|+.||+|.+||...+... +..+.-.++.++|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca---~sp~E~kLvlGC~DgSiiLyD~~~~~t~--------~~ka~~~P~~iaW 307 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCA---RSPSEDKLVLGCEDGSIILYDTTRGVTL--------LAKAEFIPTLIAW 307 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEe---cCcccceEEEEecCCeEEEEEcCCCeee--------eeeecccceEEEE
Confidence 45666543 233333335788899887 7999999999999999999999766322 1223445788999
Q ss_pred eccCCCCCEEEEEeCCCcEEEEECC
Q 000709 272 SRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
|| ++.++++|+.-|.+.+||+.
T Consensus 308 Hp---~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 308 HP---DGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cC---CCcEEEEEcCCceEEEEEee
Confidence 99 89999999999999999976
No 329
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.89 E-value=0.072 Score=58.88 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=81.1
Q ss_pred CCCCCeEEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000709 129 STKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1339)
Q Consensus 129 spdg~~lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l 207 (1339)
.++.+.+++.|+..+.+ -+|..+++..-. ..-...|-|-+.. -|++++.|+..|.+++.+.++|..+..+
T Consensus 19 ~~dskT~v~igSHs~~~~avd~~sG~~~We---~ilg~RiE~sa~v------vgdfVV~GCy~g~lYfl~~~tGs~~w~f 89 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWE---AILGVRIECSAIV------VGDFVVLGCYSGGLYFLCVKTGSQIWNF 89 (354)
T ss_pred ecCCceEEEEecCCceEEEecCCCCcEEee---hhhCceeeeeeEE------ECCEEEEEEccCcEEEEEecchhheeee
Confidence 45666788999988887 459998875332 2234455554442 2788999999999999999999877776
Q ss_pred ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccce
Q 000709 208 TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 208 ~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~ 252 (1339)
.. .+.|.+-+ ...+++.++..|+.|++....|.++..++..
T Consensus 90 ~~--~~~vk~~a--~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 90 VI--LETVKVRA--QCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ee--hhhhccce--EEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 52 23333332 2477899999999999999999998877654
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.74 E-value=0.23 Score=62.30 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred CcEEEEECCC-----CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEe-CCCcEEEEeCCCCCccc--eecccccccc-
Q 000709 191 GVIRVLSMIS-----WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGG-SDGLLILWSADHGQDSR--ELVPKLSLKA- 261 (1339)
Q Consensus 191 gtIrIWDl~t-----~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS-~DgtVrVWDl~tg~~~~--~~~~~~~l~g- 261 (1339)
+.|.+.|..+ .+.+..+. -......+. ++|||++++.++ .+.+|.|.|+.+.+... .+.+...+.+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~---vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae 370 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVP--VPKNPHGVN---TSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE 370 (635)
T ss_pred CEEEEEECCccccCCcceEEEEE--CCCCccceE---ECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence 4566777666 33444443 233445555 799999877655 59999999998754310 0001111100
Q ss_pred --cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 262 --HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 262 --H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
-..+....+|.+ ++....|-.-|..|..||+..
T Consensus 371 vevGlGPLHTaFDg---~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 371 PELGLGPLHTAFDG---RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eccCCCcceEEECC---CCCEEEeEeecceeEEEehHH
Confidence 123345678887 778888889999999999875
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.69 E-value=0.0025 Score=77.89 Aligned_cols=295 Identities=14% Similarity=0.105 Sum_probs=149.4
Q ss_pred CceEEECCCccEEEEEeeeEEEEeecCccccccccccccccccceeeeee-e-EEeCCCcceEEeecc---------ccc
Q 000709 687 PEWTAWDQTVEYCAFAYQHYIVISSLCPQYRYLGDVAIPYATGAVWHRRQ-L-FVVTPTTIECVFVDA---------GVA 755 (1339)
Q Consensus 687 ~~~~~w~~~~~~~a~~~~~~i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~-~-f~~t~~~i~~~~~~~---------~~~ 755 (1339)
++.++= |.+.++...+.|.+|+-.. -+.+.++.+..++...|..++ + -+.|.+.|-..--+. |.+
T Consensus 111 ~~~If~---G~LL~~~~~~~i~~yDw~~-~~~i~~i~v~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 111 VEKIFG---GNLLGVKSSDFICFYDWET-GKLIRRIDVSAVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp EEEEE----SSSEEEEETTEEEEE-TTT---EEEEESS-E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-G
T ss_pred cceEEc---CcEEEEECCCCEEEEEhhH-cceeeEEecCCCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCch
Confidence 444543 7777777788788887642 234555555546888998652 2 225666665432221 111
Q ss_pred chhhhhhHHHHHHHHHhhhhhhhhccccceehhhccchhhhhhccccCCCchhhhhhhcccccCCCCCcccCCCCccccC
Q 000709 756 AIDVETMKMKEEMKLKEVQSRAVAEHGELALIAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEG 835 (1339)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1339)
+..+..+|+ .+.++++.|+|||++||...
T Consensus 187 ----~~f~~~~E~---~~~IkSg~W~~d~fiYtT~~-------------------------------------------- 215 (443)
T PF04053_consen 187 ----DAFELIHEI---SERIKSGCWVEDCFIYTTSN-------------------------------------------- 215 (443)
T ss_dssp ----GGEEEEEEE----S--SEEEEETTEEEEE-TT--------------------------------------------
T ss_pred ----hceEEEEEe---cceeEEEEEEcCEEEEEcCC--------------------------------------------
Confidence 012333443 35699999999998777541
Q ss_pred CCCCCcccccccccceeeecCCceeeEEeccCCCCCCCCcceEEEEEeCcEEEEEc---CCCcEEEEecChhHHHhHHHH
Q 000709 836 DDSMMPKDIEERKVNEIAVGGGGVAVAVTRFPTEQKRPIGPLVVVGVKDGVLWLID---RYMCAHALSLSHPGIRCRCLA 912 (1339)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~l~g~~~~~l~~~d---~~~~~~~~~l~~~~~~~~~~~ 912 (1339)
-+.++.. |...++..-+..+|++. ++..++.+.=+...+.|..-.
T Consensus 216 --------------------------~lkYl~~------Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 216 --------------------------HLKYLVN------GETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp --------------------------EEEEEET------TEEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --------------------------eEEEEEc------CCcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 2334443 56777777888899876 334566555444555554433
Q ss_pred hcCCHHHHHHHHHhcCchhhHHHHHHHH-hCCcchhhcccccccCccEEE---eecccccHHHHHHHHHhccCCCccCCC
Q 000709 913 AYGDSVSAVKWASRLGREHHDDLAQFML-GMGYATEALHLPGISKRLEFD---LAMQSNDLKRALQCLITMSNSRDIGQD 988 (1339)
Q Consensus 913 ~~~~~~~a~~~~~~i~~~~~~~~a~fL~-~~G~~e~Al~~~~d~~~~~f~---La~~~g~l~~a~~~~~~~~~~~~~~~~ 988 (1339)
.-=+|..| +=+...+.+.+.++ .+- ++.++++++-- ...+.|..+.|+++++. .
T Consensus 264 ~~~~fk~a------v~~~d~~~v~~~i~~~~l-------l~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D------~--- 321 (443)
T PF04053_consen 264 SELEFKTA------VLRGDFEEVLRMIAASNL-------LPNIPKDQGQSIARFLEKKGYPELALQFVTD------P--- 321 (443)
T ss_dssp HHHHHHHH------HHTT-HHH-----HHHHT-------GGG--HHHHHHHHHHHHHTT-HHHHHHHSS-------H---
T ss_pred HHHHHHHH------HHcCChhhhhhhhhhhhh-------cccCChhHHHHHHHHHHHCCCHHHHHhhcCC------h---
Confidence 32233333 11222223322222 111 11111111111 12357888888888741 0
Q ss_pred CCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHh
Q 000709 989 HPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLAN 1068 (1339)
Q Consensus 989 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~ 1068 (1339)
..+ -+.|++.|++++|.++.+.. .+. +-+..|.-.++.
T Consensus 322 -----------------------------~~r----FeLAl~lg~L~~A~~~a~~~---~~~------~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 322 -----------------------------DHR----FELALQLGNLDIALEIAKEL---DDP------EKWKQLGDEALR 359 (443)
T ss_dssp -----------------------------HHH----HHHHHHCT-HHHHHHHCCCC---STH------HHHHHHHHHHHH
T ss_pred -----------------------------HHH----hHHHHhcCCHHHHHHHHHhc---CcH------HHHHHHHHHHHH
Confidence 023 57999999999999998877 311 267888888888
Q ss_pred cCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHH---HcCCchHHHHHHHHhCCCChHHHHHHHH
Q 000709 1069 HGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQ---DTGMLAEAVLHAHAHGRPSLKNLVEAWN 1137 (1339)
Q Consensus 1069 ~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~---~~~~~~~A~~~A~t~~~~~~~~~~~~w~ 1137 (1339)
.||.+-.++- ..+.++.....|.....||.+...++.. ..|++..|...|---| .+.++|+...
T Consensus 360 ~g~~~lAe~c---~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lg--d~~~cv~lL~ 426 (443)
T PF04053_consen 360 QGNIELAEEC---YQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLG--DVEECVDLLI 426 (443)
T ss_dssp TTBHHHHHHH---HHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT---HHHHHHHHH
T ss_pred cCCHHHHHHH---HHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcC--CHHHHHHHHH
Confidence 8888776666 5556666444566668888887766644 4557776555444333 5666665443
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.62 E-value=0.0039 Score=46.33 Aligned_cols=36 Identities=17% Similarity=0.539 Sum_probs=33.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWN 39 (1339)
Q Consensus 4 l~~L~gHs~~V~~vafSPdg~~LaSgs~DGtIrIWD 39 (1339)
+..+.+|...|.++.|++++.++++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 677889999999999999999999999999999996
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.47 E-value=0.29 Score=55.45 Aligned_cols=205 Identities=10% Similarity=0.004 Sum_probs=111.4
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccC-CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELD-NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h-~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
...+..++|+|+.+.++++....+.++. +.. ++... ..... .+-.-.|++ ..++.++++--.++.+.+++
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g~~D~EgI~y-----~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDGFGDYEGITY-----LGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--EEE-SS-SSEEEEEE------STTEEEEEETTTTEEEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCCCCCceeEEE-----ECCCEEEEEEcCCCcEEEEE
Confidence 3458999999987778888888888744 653 44322 22222 356778888 45666666555689999998
Q ss_pred CCCC------eEEEEEe----cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC---CCcccee--ccccccccc
Q 000709 198 MISW------KLVRRYT----GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH---GQDSREL--VPKLSLKAH 262 (1339)
Q Consensus 198 l~t~------~~i~~l~----~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t---g~~~~~~--~~~~~l~gH 262 (1339)
+... .....+. ..++..+-.++ +++.++.|+.+-...-.+++.+.. ....... ........+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla---~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLA---YDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEE---EETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EeccccccchhhceEEecccccCCCcceEEEE---EcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 8321 1112221 13556788898 567666666677776677777654 2111110 000001223
Q ss_pred ccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccC---CceeEEEeCCCCCEEEEecCCeEE
Q 000709 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHS---VASWCHPRAPNLDILTCVKDSHIW 338 (1339)
Q Consensus 263 ~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~---~~V~svafspdg~iLs~s~Dg~LW 338 (1339)
-..+.++.++| ..+.+++-...++.|.++| .+|+.+..+.......+-. ..--.|+|.++|.+...|+-+.+|
T Consensus 170 ~~d~S~l~~~p--~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy 245 (248)
T PF06977_consen 170 VRDLSGLSYDP--RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFY 245 (248)
T ss_dssp SS---EEEEET--TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEE
T ss_pred eccccceEEcC--CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEE
Confidence 34578999999 4677888888899999999 6677666553322222211 234488999999877777766554
No 334
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.018 Score=67.48 Aligned_cols=224 Identities=12% Similarity=0.012 Sum_probs=139.9
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--C-eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-C
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--W-KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-D 236 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t--~-~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-D 236 (1339)
-.|.+.|+.+.- ...+++.+++.||.++.|.-.. + +.++.+. .|.+.|.+++ .+-++.++.|.+. |
T Consensus 6 ymhrd~i~hv~~------tka~fiiqASlDGh~KFWkKs~isGvEfVKhFr-aHL~~I~sl~---~S~dg~L~~Sv~d~D 75 (558)
T KOG0882|consen 6 YMHRDVITHVFP------TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFR-AHLGVILSLA---VSYDGWLFRSVEDPD 75 (558)
T ss_pred hcccceeeeEee------ehhheEEeeecchhhhhcCCCCccceeehhhhH-HHHHHHHhhh---ccccceeEeeccCcc
Confidence 357777777755 2467999999999999997543 2 3444454 7888888886 7889999999888 9
Q ss_pred CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC-EE-EEEeCCCcEEEEECCCCeeEEEecCCCcccccC
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QL-ITIGADKTLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 237 gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~-~L-aSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
..++++|+.+-..+.-+. ..-+.+ .+. ...++ ++.. .| ++.-.++.+.++|-....+..- ..-.-|.
T Consensus 76 hs~KvfDvEn~DminmiK-L~~lPg---~a~-wv~sk--Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~----~fkklH~ 144 (558)
T KOG0882|consen 76 HSVKVFDVENFDMINMIK-LVDLPG---FAE-WVTSK--GDKISLIAVSLFKSGKIFVVDGFGDFCQDG----YFKKLHF 144 (558)
T ss_pred cceeEEEeeccchhhhcc-cccCCC---ceE-EecCC--CCeeeeEEeecccCCCcEEECCcCCcCccc----eeccccc
Confidence 999999998654332110 011121 121 12223 1222 22 2334689999999775442211 1135688
Q ss_pred CceeEEEeCCCCCEE-EEecCCe--EEEccCCccc-ccccCccccCCCCCCeEEccCCcccEEEEEEecCCCcEEEEEEC
Q 000709 315 VASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYS-ALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTN 390 (1339)
Q Consensus 315 ~~V~svafspdg~iL-s~s~Dg~--LWDi~t~~~~-~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~lLatGs~ 390 (1339)
.+|.++.+.+-++.+ +.-..|. -|.... .+. +..+..+..+....+..+...+. ...++.|+| .+..+.+-..
T Consensus 145 sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt-~pts~Efsp-~g~qistl~~ 221 (558)
T KOG0882|consen 145 SPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKT-EPTSFEFSP-DGAQISTLNP 221 (558)
T ss_pred CceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhccccccc-CccceEEcc-ccCcccccCc
Confidence 999999999988855 4444454 487653 121 11122333333333334444444 678999999 5666888888
Q ss_pred CCeEEEEecCCCCCCcccc
Q 000709 391 VGVIISEFDPRSLPAVAPL 409 (1339)
Q Consensus 391 DG~IlriWd~~~~p~i~~~ 409 (1339)
|..| |+++.+....+..+
T Consensus 222 DrkV-R~F~~KtGklvqei 239 (558)
T KOG0882|consen 222 DRKV-RGFVFKTGKLVQEI 239 (558)
T ss_pred ccEE-EEEEeccchhhhhh
Confidence 8887 89888875554443
No 335
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.034 Score=64.67 Aligned_cols=94 Identities=11% Similarity=-0.003 Sum_probs=74.1
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC-EEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEe
Q 000709 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL 271 (1339)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~-~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf 271 (1339)
+++.+..+.+...-+ .+|...|..++ |+|..+ ++..++.+.+|+|.|+++..++.. +..| ..+++++|
T Consensus 175 v~~l~~~~fkssq~l-p~~g~~Irdla---fSp~~~GLl~~asl~nkiki~dlet~~~vss------y~a~-~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL-PGEGSFIRDLA---FSPFNEGLLGLASLGNKIKIMDLETSCVVSS------YIAY-NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhhcc-cccchhhhhhc---cCccccceeeeeccCceEEEEecccceeeeh------eecc-CCceeeee
Confidence 556665555555533 48889999997 777766 788999999999999998876544 3445 77999999
Q ss_pred eccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 272 SRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 272 sp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
.- ++.++|..|-..|.|.|||++..+
T Consensus 244 Dl--de~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 244 DL--DERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred cc--CCcceeEEeccCceEEEEEccCCC
Confidence 98 467899999999999999998644
No 336
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.33 E-value=1.2 Score=52.34 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=126.8
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEECCCCcEEEEEeccCc--------cceEEeccccceeEeeccccCCC
Q 000709 16 KIQLHPTHPWLVTAD----------ASDHVSVWNWEHRQVIYELKAGGV--------DQRRLVGAKLEKLAEGELEHKGK 77 (1339)
Q Consensus 16 ~vafSPdg~~LaSgs----------~DGtIrIWDl~tg~~l~~~~~~~~--------~~i~~vs~d~~~Lasgs~d~~gk 77 (1339)
.+..+|+|+.+.+++ ..-.|.+||..+-....++..... .....++.+++.+.....
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~----- 114 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNF----- 114 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEE-----
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEcc-----
Confidence 367899999777643 245799999999988887764322 122233344444433221
Q ss_pred ccccccCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEec-CCceee
Q 000709 78 PTEAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLV-TMRGRD 156 (1339)
Q Consensus 78 ~~~~l~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~-t~~~~~ 156 (1339)
.+ -..|.+-|+...+.+. ... ...+..+--+.+. .+...|+++....+.+. .++...
T Consensus 115 -------TP-------a~SVtVVDl~~~kvv~----ei~---~PGC~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 115 -------TP-------ATSVTVVDLAAKKVVG----EID---TPGCWLIYPSGNR-GFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp -------SS-------SEEEEEEETTTTEEEE----EEE---GTSEEEEEEEETT-EEEEEETTSCEEEEEETSTSSEEE
T ss_pred -------CC-------CCeEEEEECCCCceee----eec---CCCEEEEEecCCC-ceEEEecCCceEEEEECCCCCEeE
Confidence 11 2355666666655431 000 1112222222333 36666666666666554 333321
Q ss_pred ccc--cccCCCCeE-EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeE--EEEEecC-------C--CCCeeEEEEee
Q 000709 157 IPK--QELDNKSLV-CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKL--VRRYTGG-------H--KGSISCLMTFM 222 (1339)
Q Consensus 157 v~~--~~~h~~~V~-~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~--i~~l~~g-------H--~~~V~sl~wf~ 222 (1339)
... +....+++. .-++ +..+..++.-+.+|.|+-.|+..... ...+.-. + .+.-.-++
T Consensus 173 ~~t~~F~~~~dp~f~~~~~-----~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A--- 244 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAY-----SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA--- 244 (342)
T ss_dssp EEEEESSTTTS-B-S--EE-----ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE---
T ss_pred eeccccCCCCcccccccce-----ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee---
Confidence 111 111222222 2233 23455666678999999988875432 2222100 0 01111122
Q ss_pred eCCCCCEEEEEeC---CC-------cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEe-CCCcEE
Q 000709 223 ASSGEALLVSGGS---DG-------LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG-ADKTLA 291 (1339)
Q Consensus 223 ~spdg~~LaSgS~---Dg-------tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs-~Dg~Ir 291 (1339)
+++..+.|..--. ++ .|-++|+.+++.+.++ .+ ...+.+|..+. ++.++|++.+ .++.|.
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri----~l---~~~~~Si~Vsq--d~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARI----PL---EHPIDSIAVSQ--DDKPLLYALSAGDGTLD 315 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEE----EE---EEEESEEEEES--SSS-EEEEEETTTTEEE
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEE----eC---CCccceEEEcc--CCCcEEEEEcCCCCeEE
Confidence 3443434333211 11 3777788888877653 12 23477899988 4677887665 589999
Q ss_pred EEECCCCeeEEEec
Q 000709 292 IWDTVSFKELRRIK 305 (1339)
Q Consensus 292 IWDl~t~~~l~~~~ 305 (1339)
+||..+|+.+++++
T Consensus 316 v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 316 VYDAATGKLVRSIE 329 (342)
T ss_dssp EEETTT--EEEEE-
T ss_pred EEeCcCCcEEeehh
Confidence 99999999998864
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.32 E-value=0.0031 Score=76.47 Aligned_cols=198 Identities=12% Similarity=0.135 Sum_probs=121.2
Q ss_pred CCeeeeeeCCCC-CeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE----CCCcEE
Q 000709 121 SGFASPPPSTKG-RHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS----SDGVIR 194 (1339)
Q Consensus 121 ~~V~slafspdg-~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs----~DgtIr 194 (1339)
..+.|+++.-+. +.++++|..+|.|.+ ......-..-.....+..+.++++|.+ -|.++|+.|- .|..+.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwne----LDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNE----LDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccccccccccccccc----ccHHHHHhhhhhhcccCCcc
Confidence 346666654433 358899999998865 433222111112345667889999953 2566777774 356799
Q ss_pred EEECCCC--e--EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEE
Q 000709 195 VLSMISW--K--LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVE 270 (1339)
Q Consensus 195 IWDl~t~--~--~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~sva 270 (1339)
|||+.++ . .-..+..+......+++|. .+.+++.+|...+.|+++|++....... .-.+..|..+.
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~-------svnTk~vqG~t 202 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVS-------SVNTKYVQGIT 202 (783)
T ss_pred ceecccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhh-------hhhhhhcccce
Confidence 9999875 1 1122221244556688763 7888999999999999999984322111 11223355567
Q ss_pred eeccCCCCCEEEEEeCCCcEEEEE-CCCCe-eEEEecCCCcccccC----CceeEEEeCCC--CCEEEEecCC-e--EEE
Q 000709 271 LSRVMGGSPQLITIGADKTLAIWD-TVSFK-ELRRIKPVPKLACHS----VASWCHPRAPN--LDILTCVKDS-H--IWA 339 (1339)
Q Consensus 271 fsp~~~dg~~LaSgs~Dg~IrIWD-l~t~~-~l~~~~~~~~l~~H~----~~V~svafspd--g~iLs~s~Dg-~--LWD 339 (1339)
..|. ...++++-. ||.|-+|| .+.-+ .++. +.... ..+..++|.|. |.++++..|. + ++|
T Consensus 203 Vdp~--~~nY~cs~~-dg~iAiwD~~rnienpl~~------i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlyd 273 (783)
T KOG1008|consen 203 VDPF--SPNYFCSNS-DGDIAIWDTYRNIENPLQI------ILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYD 273 (783)
T ss_pred ecCC--CCCceeccc-cCceeeccchhhhccHHHH------HhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEec
Confidence 7774 456777666 99999999 44322 1111 11111 23778999986 4455777776 3 566
Q ss_pred cc
Q 000709 340 IE 341 (1339)
Q Consensus 340 i~ 341 (1339)
+.
T Consensus 274 i~ 275 (783)
T KOG1008|consen 274 IC 275 (783)
T ss_pred cc
Confidence 65
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.25 E-value=0.68 Score=58.03 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=65.0
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE------------------eCCCcEEEEeC
Q 000709 183 LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG------------------GSDGLLILWSA 244 (1339)
Q Consensus 183 ~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg------------------S~DgtVrVWDl 244 (1339)
.++.++.+|.+..+|.++++.+-....... .+. .++ ..+..+ ..+|.|.-.|.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~----~~~---~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ----PMA---YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc----ccc---cCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 678888999999999999988766531100 111 122 222221 24677888888
Q ss_pred CCCCccceecccccccccc------cce--EEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 000709 245 DHGQDSRELVPKLSLKAHD------GGV--VAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1339)
Q Consensus 245 ~tg~~~~~~~~~~~l~gH~------~~V--~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1339)
.+|+.+.+.. +..+. ... ..+.. .+..|+.++.||.|+.+|..+|+.+-++
T Consensus 374 ~tG~~~W~~~----~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~dG~l~ald~~tG~~lW~~ 432 (488)
T cd00216 374 KTGKVVWEKR----EGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAADGYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCcEeeEee----CCccccccccCCcccCcceEe-----cCCeEEEECCCCeEEEEECCCCceeeEE
Confidence 8887665421 11110 011 11222 3468888899999999999999988775
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.24 E-value=1.2 Score=53.37 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=125.4
Q ss_pred cCCCCEEEEEe---------CCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEE
Q 000709 20 HPTHPWLVTAD---------ASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQV 90 (1339)
Q Consensus 20 SPdg~~LaSgs---------~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sV 90 (1339)
|||+++++... ..+.+.|||+.+++............-...+|+++.++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~------------------- 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR------------------- 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-------------------
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-------------------
Confidence 68888777632 24678999999876554333222233334557887777653
Q ss_pred EEcCCeEEEEEcCCcccccccc----ccccc--------cCCCCeeeeeeCCCCCeEEEEEecCcEE-E-----------
Q 000709 91 NFYDDDVRFWQLWRNRAAAAEA----PTAVS--------NVTSGFASPPPSTKGRHFLVICCVNKAI-F----------- 146 (1339)
Q Consensus 91 aF~Dg~IrlWDl~~~~~l~~~~----~~~~~--------~~~~~V~slafspdg~~lLasgs~dg~I-~----------- 146 (1339)
++.|.+++..++...+... ....| .....-..+.||||++.++..-.++..+ .
T Consensus 62 ---~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~ 138 (353)
T PF00930_consen 62 ---DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS 138 (353)
T ss_dssp ---TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE
T ss_pred ---cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc
Confidence 5566666654443221000 00000 0012235677999998554444333322 1
Q ss_pred ------------------------EEecCCceeecccc---ccCCCCeEEEEEeeccccCCCCEEEEE--ECCC---cEE
Q 000709 147 ------------------------LDLVTMRGRDIPKQ---ELDNKSLVCMEFLSRSAVGDVPLVAFG--SSDG---VIR 194 (1339)
Q Consensus 147 ------------------------wD~~t~~~~~v~~~---~~h~~~V~~vaf~P~s~Spdg~~LasG--s~Dg---tIr 194 (1339)
+|+.+++...+... ......+..+.| ++++..|+.. +.+. .+.
T Consensus 139 ~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W-----~~d~~~l~~~~~nR~q~~~~l~ 213 (353)
T PF00930_consen 139 QYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGW-----SPDGKRLWVQWLNRDQNRLDLV 213 (353)
T ss_dssp SS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEE-----EETTEEEEEEEEETTSTEEEEE
T ss_pred cCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccccee-----cCCCcEEEEEEcccCCCEEEEE
Confidence 12222221111111 122445677777 4566633333 3332 466
Q ss_pred EEECCCCeEEEEEecCCCCCee---EEEEeee-CCCCCEEEEEeCCCcEEEEe--CCCCCccceecccccccccccceEE
Q 000709 195 VLSMISWKLVRRYTGGHKGSIS---CLMTFMA-SSGEALLVSGGSDGLLILWS--ADHGQDSRELVPKLSLKAHDGGVVA 268 (1339)
Q Consensus 195 IWDl~t~~~i~~l~~gH~~~V~---sl~wf~~-spdg~~LaSgS~DgtVrVWD--l~tg~~~~~~~~~~~l~gH~~~V~s 268 (1339)
++|..++.+.........+.|. ... + + ..+..+|.....||.-+++- ...+. .+ .+....-.|..
T Consensus 214 ~~d~~tg~~~~~~~e~~~~Wv~~~~~~~-~-~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~------~lT~G~~~V~~ 284 (353)
T PF00930_consen 214 LCDASTGETRVVLEETSDGWVDVYDPPH-F-LGPDGNEFLWISERDGYRHLYLYDLDGGK-PR------QLTSGDWEVTS 284 (353)
T ss_dssp EEEECTTTCEEEEEEESSSSSSSSSEEE-E--TTTSSEEEEEEETTSSEEEEEEETTSSE-EE------ESS-SSS-EEE
T ss_pred EEECCCCceeEEEEecCCcceeeecccc-c-ccCCCCEEEEEEEcCCCcEEEEEcccccc-ee------ccccCceeecc
Confidence 7787766443333222333332 332 1 3 34455555666777666554 44333 11 13334455644
Q ss_pred -EEeeccCCCCCEEEEEeCC----CcEEEEECC-CCeeEEEecCCCcccccCCceeEEEeCCCCCEE
Q 000709 269 -VELSRVMGGSPQLITIGAD----KTLAIWDTV-SFKELRRIKPVPKLACHSVASWCHPRAPNLDIL 329 (1339)
Q Consensus 269 -vafsp~~~dg~~LaSgs~D----g~IrIWDl~-t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL 329 (1339)
+.|++ .++.+..++..+ ..|..-++. .+. ++.+ .+.......+.|||+++++
T Consensus 285 i~~~d~--~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~L------T~~~~~~~~~~~Spdg~y~ 342 (353)
T PF00930_consen 285 ILGWDE--DNNRIYFTANGDNPGERHLYRVSLDSGGE-PKCL------TCEDGDHYSASFSPDGKYY 342 (353)
T ss_dssp EEEEEC--TSSEEEEEESSGGTTSBEEEEEETTETTE-EEES------STTSSTTEEEEE-TTSSEE
T ss_pred cceEcC--CCCEEEEEecCCCCCceEEEEEEeCCCCC-eEec------cCCCCCceEEEECCCCCEE
Confidence 66776 234444566553 245555666 333 3442 2222222689999999955
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.24 E-value=0.19 Score=63.07 Aligned_cols=189 Identities=12% Similarity=0.026 Sum_probs=111.6
Q ss_pred EcCCCCEEE-EEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeecccc-CCCccccccCCceEEEEEcCCe
Q 000709 19 LHPTHPWLV-TADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEH-KGKPTEAMRGGSVKQVNFYDDD 96 (1339)
Q Consensus 19 fSPdg~~La-Sgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~-~gk~~~~l~~g~V~sVaF~Dg~ 96 (1339)
++|||+.+. +.-..+.+.+.|.++.+...++..........+++++.++.+.+.+. .+..+..+..+. ...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-------~d~ 272 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-------RDW 272 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc-------Cce
Confidence 556777553 33345788889999888888887665444445557777776654221 111111111110 112
Q ss_pred EEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCC--ceeeccccccCCCCeEEEEEee
Q 000709 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTM--RGRDIPKQELDNKSLVCMEFLS 174 (1339)
Q Consensus 97 IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~--~~~~v~~~~~h~~~V~~vaf~P 174 (1339)
+.++++...+ .+.++|+... . ..+...++|..+. ....+.....-...+..+.+
T Consensus 273 ~vvfni~~ie--------------------a~vkdGK~~~-V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~v-- 328 (635)
T PRK02888 273 VVVFNIARIE--------------------EAVKAGKFKT-I-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNT-- 328 (635)
T ss_pred EEEEchHHHH--------------------HhhhCCCEEE-E-CCCEEEEEECCccccCCcceEEEEECCCCccceEE--
Confidence 2222222211 2345777333 3 2344557788761 00122233445677888999
Q ss_pred ccccCCCCEEEEEE-CCCcEEEEECCCCe------------EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 175 RSAVGDVPLVAFGS-SDGVIRVLSMISWK------------LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 175 ~s~Spdg~~LasGs-~DgtIrIWDl~t~~------------~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
||||+++++++ .+.+|.|.|+.+.+ .+.... --.++.. .. |..+|+...|-..|..|..
T Consensus 329 ---SPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLH-Ta---FDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 329 ---SPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLH-TA---FDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred ---CCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcce-EE---ECCCCCEEEeEeecceeEE
Confidence 88999877665 68999999998754 233333 2223333 22 6888898999999999999
Q ss_pred EeCCC
Q 000709 242 WSADH 246 (1339)
Q Consensus 242 WDl~t 246 (1339)
||+..
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99875
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=96.11 E-value=0.059 Score=65.90 Aligned_cols=114 Identities=11% Similarity=0.036 Sum_probs=76.0
Q ss_pred eeeeeeCCCCCeEEEEE----ecCcEE-----EEEecCCceeecccc-ccCCCCeEEEEEeeccccCCCCEEEEEECCCc
Q 000709 123 FASPPPSTKGRHFLVIC----CVNKAI-----FLDLVTMRGRDIPKQ-ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGV 192 (1339)
Q Consensus 123 V~slafspdg~~lLasg----s~dg~I-----~wD~~t~~~~~v~~~-~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dgt 192 (1339)
..++.|+...++.+.+- +.++.. +++....+.+.+... ......|.|+++ +|+...++.|+.||+
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~-----sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCAR-----SPSEDKLVLGCEDGS 282 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEec-----CcccceEEEEecCCe
Confidence 35666776444344333 223322 223333333333222 345778999999 789999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC
Q 000709 193 IRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG 247 (1339)
Q Consensus 193 IrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg 247 (1339)
|.+||...+... +. .+.-..+.++ ++|+|..|++|+..|.+.+||+.-.
T Consensus 283 iiLyD~~~~~t~--~~-ka~~~P~~ia---WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 283 IILYDTTRGVTL--LA-KAEFIPTLIA---WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCCCeee--ee-eecccceEEE---EcCCCcEEEEEcCCceEEEEEeecC
Confidence 999998765322 21 2334566676 5899999999999999999998654
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.07 E-value=2.3 Score=53.29 Aligned_cols=110 Identities=16% Similarity=0.190 Sum_probs=64.2
Q ss_pred CCCcEEEEECCCCeEEEEEecCCCC-------------------CeeEEEEeeeCCCCCEEEEEeCCC------------
Q 000709 189 SDGVIRVLSMISWKLVRRYTGGHKG-------------------SISCLMTFMASSGEALLVSGGSDG------------ 237 (1339)
Q Consensus 189 ~DgtIrIWDl~t~~~i~~l~~gH~~-------------------~V~sl~wf~~spdg~~LaSgS~Dg------------ 237 (1339)
.++.+..+|..+++.+-++...+.. .|.+-. .+.+.+..++.++.|+
T Consensus 173 ~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~p--a~d~~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 173 VRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASP--TYDPKTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCe--eEeCCCCEEEEECCCCCCCccCCccCCC
Confidence 3678999999999887766422111 011100 1234456777777665
Q ss_pred ------cEEEEeCCCCCccceeccccccccccc----ceEEEEeeccC-CCC---CEEEEEeCCCcEEEEECCCCeeEEE
Q 000709 238 ------LLILWSADHGQDSRELVPKLSLKAHDG----GVVAVELSRVM-GGS---PQLITIGADKTLAIWDTVSFKELRR 303 (1339)
Q Consensus 238 ------tVrVWDl~tg~~~~~~~~~~~l~gH~~----~V~svafsp~~-~dg---~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1339)
.|.-+|..+|+....+. ...|.. ......+.+.. -++ ..++.++.+|.+...|..+|+.+-.
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~~~----~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~ 326 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWFYQ----TTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISA 326 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEEee----CCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeE
Confidence 78999999998765421 111211 00111111100 022 2677888999999999999998765
Q ss_pred e
Q 000709 304 I 304 (1339)
Q Consensus 304 ~ 304 (1339)
.
T Consensus 327 ~ 327 (488)
T cd00216 327 R 327 (488)
T ss_pred e
Confidence 4
No 343
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.07 E-value=0.074 Score=69.59 Aligned_cols=69 Identities=17% Similarity=0.077 Sum_probs=44.1
Q ss_pred HhcCCHHHHHHHHHhcCch---hhHHHHHHHHhCCcchhhcccccccC--ccE---------EEeecccccHHHHHHHHH
Q 000709 912 AAYGDSVSAVKWASRLGRE---HHDDLAQFMLGMGYATEALHLPGISK--RLE---------FDLAMQSNDLKRALQCLI 977 (1339)
Q Consensus 912 ~~~~~~~~a~~~~~~i~~~---~~~~~a~fL~~~G~~e~Al~~~~d~~--~~~---------f~La~~~g~l~~a~~~~~ 977 (1339)
.-.|++++|.+++..+++. -++.++.-+.+.|..++|+.+...-. ..+ ...+.++|+++.|.++..
T Consensus 270 ~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3458888888888775543 26777788888888888887653310 111 123446677777777766
Q ss_pred hcc
Q 000709 978 TMS 980 (1339)
Q Consensus 978 ~~~ 980 (1339)
.+.
T Consensus 350 ~m~ 352 (697)
T PLN03081 350 GLI 352 (697)
T ss_pred HHH
Confidence 543
No 344
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.01 E-value=0.11 Score=62.48 Aligned_cols=205 Identities=15% Similarity=0.058 Sum_probs=127.6
Q ss_pred HHhcCCHHHHHHHHHhcCc------hhhHHHHHHHHhCCcchhhccccccc----Ccc-E-----E--Ee---ecccccH
Q 000709 911 LAAYGDSVSAVKWASRLGR------EHHDDLAQFMLGMGYATEALHLPGIS----KRL-E-----F--DL---AMQSNDL 969 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~i~~------~~~~~~a~fL~~~G~~e~Al~~~~d~----~~~-~-----f--~L---a~~~g~l 969 (1339)
....|+++.|.+++.+.-+ .-+..++..+..+|-.++|++....- +.. . + .| .++.|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 4456899999888776321 23666777888888888887643221 110 0 1 11 2456888
Q ss_pred HHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 000709 970 KRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGS 1049 (1339)
Q Consensus 970 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~ 1049 (1339)
+.|++.....-.. . +. ...-|..||+.+...|+++.|.+.|+++....
T Consensus 197 ~~A~~~~~~al~~---~-------------------------p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 244 (389)
T PRK11788 197 DAARALLKKALAA---D-------------------------PQ---CVRASILLGDLALAQGDYAAAIEALERVEEQD- 244 (389)
T ss_pred HHHHHHHHHHHhH---C-------------------------cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence 8888877643211 0 00 12578889999999999999999999984321
Q ss_pred ccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHH-H---HHcCCHHHHHHHHHHc-CCchHHH----HH
Q 000709 1050 VKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS-A---AILGDNALMEKAWQDT-GMLAEAV----LH 1120 (1339)
Q Consensus 1050 ~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~-~---~~lgd~~~~~~~l~~~-~~~~~A~----~~ 1120 (1339)
+ .....-+..|..+|...|+.+...+..+.+.........+.. + ...|++++++++|.+. ...|... ++
T Consensus 245 p--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 245 P--EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred h--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 1 000011356778899999999999998888775433222221 1 1678899998888653 2223221 12
Q ss_pred HHH---hCCCChHHHHHHHHHHHhhhcCCCCc
Q 000709 1121 AHA---HGRPSLKNLVEAWNKMLQKEVDHTPT 1149 (1339)
Q Consensus 1121 A~t---~~~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1339)
+.. ++.....+.++.+++++.+.+...|.
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 221 12335667778888888877766665
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.87 E-value=3.5 Score=47.13 Aligned_cols=230 Identities=14% Similarity=0.177 Sum_probs=120.2
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCcEEEEEeccCccceEEec--cccceeEeeccccCCCccccccCCceEEEEEcCCeE
Q 000709 21 PTHPWLVTADASDHVSVWNWE-HRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDV 97 (1339)
Q Consensus 21 Pdg~~LaSgs~DGtIrIWDl~-tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~I 97 (1339)
..+++|+.|..+| |.++++. ........+... +..+. ++.+.|+.- .|+.+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~---I~ql~vl~~~~~llvL----------------------sd~~l 58 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSS---ITQLSVLPELNLLLVL----------------------SDGQL 58 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecce---EEEEEEecccCEEEEE----------------------cCCcc
Confidence 3577899998888 8889883 223333222221 22222 333333332 47888
Q ss_pred EEEEcCCccccccccc----------cccccCCCCeeeee--eCCCCCeEEEEEecCcEEEEEecCC--ce-eecccccc
Q 000709 98 RFWQLWRNRAAAAEAP----------TAVSNVTSGFASPP--PSTKGRHFLVICCVNKAIFLDLVTM--RG-RDIPKQEL 162 (1339)
Q Consensus 98 rlWDl~~~~~l~~~~~----------~~~~~~~~~V~sla--fspdg~~lLasgs~dg~I~wD~~t~--~~-~~v~~~~~ 162 (1339)
+++++..-........ ..... ...+...+ -...+...|+++....+.++.+... +. ..... ..
T Consensus 59 ~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke-~~ 136 (275)
T PF00780_consen 59 YVYDLDSLEPVSTSAPLAFPKSRSLPTKLPE-TKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKE-IS 136 (275)
T ss_pred EEEEchhhccccccccccccccccccccccc-cCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEE-EE
Confidence 8888766544321100 00111 12233333 2234444677777666666644432 21 12211 23
Q ss_pred CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-----------CCeeEEEEeeeCCCCCEEE
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK-----------GSISCLMTFMASSGEALLV 231 (1339)
Q Consensus 163 h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~-----------~~V~sl~wf~~spdg~~La 231 (1339)
-.+.+.++.|. ++.++.|..++ ..+.|+.++.....+..... .++..+. -+++.+|+
T Consensus 137 lp~~~~~i~~~-------~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~e~Ll 204 (275)
T PF00780_consen 137 LPDPPSSIAFL-------GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQ----LSDNEFLL 204 (275)
T ss_pred cCCCcEEEEEe-------CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEE----eCCceEEE
Confidence 35789999993 67788887555 78899987655443321111 1222221 23345555
Q ss_pred EEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEe
Q 000709 232 SGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRI 304 (1339)
Q Consensus 232 SgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~ 304 (1339)
+ .|..-.+-|.. |+..+. ....+. ..+.++++.. ++|+..+. +.|.||++.+++.++++
T Consensus 205 ~--~~~~g~fv~~~-G~~~r~--~~i~W~---~~p~~~~~~~-----pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 205 C--YDNIGVFVNKN-GEPSRK--STIQWS---SAPQSVAYSS-----PYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred E--ecceEEEEcCC-CCcCcc--cEEEcC---CchhEEEEEC-----CEEEEECC-CEEEEEECcCCcEEEEE
Confidence 3 23344444443 433321 111222 2455666654 57777666 55999999999998875
No 346
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.79 E-value=0.069 Score=65.59 Aligned_cols=216 Identities=16% Similarity=0.148 Sum_probs=143.4
Q ss_pred HHHHhcCCHHHHHHHHHhc-----CchhhHHHHHHHHhCCcchhhcccccccCccEE----EeecccccHHHHHHHHHhc
Q 000709 909 RCLAAYGDSVSAVKWASRL-----GREHHDDLAQFMLGMGYATEALHLPGISKRLEF----DLAMQSNDLKRALQCLITM 979 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i-----~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f----~La~~~g~l~~a~~~~~~~ 979 (1339)
..++-.++|.+|+.++.+| ...++-.+|...-.+|-.|.|-++.+.. + +| ++--+.|+.+.|..++.+-
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-~-~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-D-LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-c-hhHHHHHHHhccccHHHHHHHHHHh
Confidence 3455668999999999874 2344677888889999999998877662 2 33 2333678888888888643
Q ss_pred cCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccch
Q 000709 980 SNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHEL 1059 (1339)
Q Consensus 980 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~ 1059 (1339)
-.. + -+|+ -+..-++....+|.+..||..|--. +.|.-|.+.+|-
T Consensus 818 ~~~-----e-----------------------~t~~----~yiakaedldehgkf~eaeqlyiti---~~p~~aiqmydk 862 (1636)
T KOG3616|consen 818 HGP-----E-----------------------ATIS----LYIAKAEDLDEHGKFAEAEQLYITI---GEPDKAIQMYDK 862 (1636)
T ss_pred cCc-----h-----------------------hHHH----HHHHhHHhHHhhcchhhhhheeEEc---cCchHHHHHHHh
Confidence 221 1 0122 4555577777888888888777665 655444443332
Q ss_pred hh-----hHHHhHhcCCh--hHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHHhCCCCh-HH
Q 000709 1060 RG-----LALRLANHGEL--TRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSL-KN 1131 (1339)
Q Consensus 1060 ~~-----l~ll~~~~g~~--~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~-~~ 1131 (1339)
.+ +-|+--.+|+. +.-+.+++..+.+|+...+-.+-+-.||....|+++..++++.+||+.|||-|.... +.
T Consensus 863 ~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 863 HGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred hCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 21 22222334442 233456777889999966667777899999999999999999999999999998766 56
Q ss_pred HHHHHHHHHhhhc---CCCCcchhhHHHHHHhc
Q 000709 1132 LVEAWNKMLQKEV---DHTPTAKTDAAAAFLAS 1161 (1339)
Q Consensus 1132 ~~~~w~~~l~~~~---~~~~~~~~~~~~~~~~~ 1161 (1339)
+.-+|-+.+.-.. ---+-.+..+|.+|-++
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d 975 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAAD 975 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhc
Confidence 6688988763211 11223455566665543
No 347
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.59 E-value=0.1 Score=64.79 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=102.2
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEEC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSM 198 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl 198 (1339)
...|.--+++..++ +++.|+.-|.+.| +-..+..+..+ ..+ ...+.++... |++..++|.|+..|.|.++-+
T Consensus 33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~-~~~-~~~~~~~~~v----s~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK-NEG-ATGITCVRSV----SSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc-ccC-ccceEEEEEe----cchhHhhhhhcCCceEEeehh
Confidence 34455556667777 8999999999977 55444332221 122 3334443332 678889999999999999988
Q ss_pred CCCe-----EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 199 ISWK-----LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 199 ~t~~-----~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
+... .+......|...|+|++| ++++..|.+|...|+|..-.+.+.. ... .....+..-...|.-+.+..
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~W---s~~~~k~ysGD~~Gkv~~~~L~s~~-~~~-~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEW---SKNGMKLYSGDSQGKVVLTELDSRQ-AFL-SKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEe---cccccEEeecCCCceEEEEEechhh-hhc-cccceeeccCcceEEeeccc
Confidence 6532 223333457889999995 8999999999999999998887731 111 12223344566777777764
Q ss_pred cCCCCCEEEEEeCCCcEEEEECCCC
Q 000709 274 VMGGSPQLITIGADKTLAIWDTVSF 298 (1339)
Q Consensus 274 ~~~dg~~LaSgs~Dg~IrIWDl~t~ 298 (1339)
+.+|++... +. .+++.+.+
T Consensus 181 ----~~LLVStl~-r~-~Lc~tE~e 199 (726)
T KOG3621|consen 181 ----SYLLVSTLT-RC-ILCQTEAE 199 (726)
T ss_pred ----ceehHhhhh-hh-heeecchh
Confidence 444444332 22 34555543
No 348
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.57 E-value=0.11 Score=63.82 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=99.0
Q ss_pred CcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHH
Q 000709 943 GYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFL 1022 (1339)
Q Consensus 943 G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 1022 (1339)
|-...|..+-+ ...+|--||.-||+++|...+..+... .+.+ .+|+
T Consensus 436 ~takvayeld~--~~iefgaaid~~df~ra~afles~~~~--~da~------------------------------amw~ 481 (1636)
T KOG3616|consen 436 GTAKVAYELDE--GLIEFGAAIDDGDFDRATAFLESLEMG--PDAE------------------------------AMWI 481 (1636)
T ss_pred cceeEEEEecC--cceecccccccCchHHHHHHHHhhccC--ccHH------------------------------HHHH
Confidence 44455555543 378899999999999999998753322 1111 6999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhH--hcCChh---HHHHHHHHHHHcCCChHHHHHHHH
Q 000709 1023 DLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLA--NHGELT---RLSGLVTNLISLGLGREAAFSAAI 1097 (1339)
Q Consensus 1023 ~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~--~~g~~~---~l~~l~~~a~~~~~~~~~af~~~~ 1097 (1339)
+|++.||..||+-+|+.||.-. +.+-.|--+||...++--.+ .-|+-+ +.+-|+.+..++=+ .+-..-+-
T Consensus 482 ~laelale~~nl~iaercfaai---~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkfk--~ae~ifle 556 (1636)
T KOG3616|consen 482 RLAELALEAGNLFIAERCFAAI---GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKFK--EAEMIFLE 556 (1636)
T ss_pred HHHHHHHHhccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhh--HHHHHHHh
Confidence 9999999999999999999987 64333333333322222111 123333 33334333332211 11112235
Q ss_pred cCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHH
Q 000709 1098 LGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLV 1133 (1339)
Q Consensus 1098 lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~ 1133 (1339)
.++.++++-++++--++.||.-.|+.-|.|.+..+-
T Consensus 557 qn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk 592 (1636)
T KOG3616|consen 557 QNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLK 592 (1636)
T ss_pred cccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHH
Confidence 688999999999999999999999999988776553
No 349
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.38 E-value=0.31 Score=66.14 Aligned_cols=227 Identities=15% Similarity=0.089 Sum_probs=115.8
Q ss_pred HHhcCCHHHHHHHHHhc-------CchhhHHHHHHHHhCCcchhhcccccccCccEE-----------EeecccccHHHH
Q 000709 911 LAAYGDSVSAVKWASRL-------GREHHDDLAQFMLGMGYATEALHLPGISKRLEF-----------DLAMQSNDLKRA 972 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~i-------~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f-----------~La~~~g~l~~a 972 (1339)
....|+++.|.+++..+ +...++.++..+-+.|..++|+++...-.+..+ +...+.|+++.|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 34557788777766552 123366777777777877777776544211111 234567778888
Q ss_pred HHHHHhccCCCccCCCCCCCCcccccccccccchhhhh------h----hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000709 973 LQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEA------V----QGIVKFAKEFLDLIDAADATGQANIAREALK 1042 (1339)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~ 1042 (1339)
+++...|... +...+..-.+.|+..=.+..+..++ + .++..+..-|..|.+.+.+.|+++.|++.|+
T Consensus 527 l~lf~~M~~~---Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 527 FGAYGIMRSK---NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHc---CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777665332 1110000111112111111111111 1 0111122356777777777777777777777
Q ss_pred HHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCC-hHHHHHHH-----HcCCHHHHHHHHHHc---CC
Q 000709 1043 RLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG-REAAFSAA-----ILGDNALMEKAWQDT---GM 1113 (1339)
Q Consensus 1043 ~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~-~~~af~~~-----~lgd~~~~~~~l~~~---~~ 1113 (1339)
++...+- . ....-|..|+-.|+..|+.++..++.+.+...|-. +...|.++ -.|+++++.+++.+. |.
T Consensus 604 ~M~e~gi-~--p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 604 MIHEYNI-K--GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHcCC-C--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7754430 0 01123566677777777777777777777766532 12333332 456777776666542 22
Q ss_pred chHHH---HHHHHhCC-CChHHHHHHHHHHHhhh
Q 000709 1114 LAEAV---LHAHAHGR-PSLKNLVEAWNKMLQKE 1143 (1339)
Q Consensus 1114 ~~~A~---~~A~t~~~-~~~~~~~~~w~~~l~~~ 1143 (1339)
-+... .+...|+. ..+.+..+.|+++....
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 11110 11222222 34566777777765543
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.34 E-value=1.8 Score=51.87 Aligned_cols=253 Identities=13% Similarity=0.138 Sum_probs=129.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEecc------------------CccceEEeccccceeEeecc
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAG------------------GVDQRRLVGAKLEKLAEGEL 72 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l~~~~~~------------------~~~~i~~vs~d~~~Lasgs~ 72 (1339)
...+....|||+|++++.. .++.|.+++..++...+--..+ .......-+||++.|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 4568889999999999988 5689999999887544322222 01223334588998888776
Q ss_pred ccCCCc-ccccc---C-C---ceEEEEE-----cCC--eEEEEEcCCccccccccccccccCCCCeeeeeeCCCCC-eEE
Q 000709 73 EHKGKP-TEAMR---G-G---SVKQVNF-----YDD--DVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGR-HFL 136 (1339)
Q Consensus 73 d~~gk~-~~~l~---~-g---~V~sVaF-----~Dg--~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~-~lL 136 (1339)
|...-. ..+.. . + .+..+.+ .+. .+.++|+.+++................+..+.|.++++ .++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 654221 11111 1 1 3444444 122 45568887776532222211222356788999999987 333
Q ss_pred EEEecCcEE----EEEecCCceeeccccccCCCCe---EEEEEeeccccCCCC-EEEEEECCCc--EEEEECCCCeEEEE
Q 000709 137 VICCVNKAI----FLDLVTMRGRDIPKQELDNKSL---VCMEFLSRSAVGDVP-LVAFGSSDGV--IRVLSMISWKLVRR 206 (1339)
Q Consensus 137 asgs~dg~I----~wD~~t~~~~~v~~~~~h~~~V---~~vaf~P~s~Spdg~-~LasGs~Dgt--IrIWDl~t~~~i~~ 206 (1339)
.....++.. .+|..++.++.+. ......+| ....|. .+++. ++.....||. |.+++..++. .+.
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~-~e~~~~Wv~~~~~~~~~----~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~ 274 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVL-EETSDGWVDVYDPPHFL----GPDGNEFLWISERDGYRHLYLYDLDGGK-PRQ 274 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEE-EEESSSSSSSSSEEEE-----TTTSSEEEEEEETTSSEEEEEEETTSSE-EEE
T ss_pred EEcccCCCEEEEEEEECCCCceeEEE-EecCCcceeeecccccc----cCCCCEEEEEEEcCCCcEEEEEcccccc-eec
Confidence 333433322 3388777655432 22333333 244442 13444 4444556775 4455655555 344
Q ss_pred EecCCCCCeeEEEEeeeCCCCC-EEEEEeCCC----cEEEEeCC-CCCccceecccccccccccceEEEEeeccCCCCCE
Q 000709 207 YTGGHKGSISCLMTFMASSGEA-LLVSGGSDG----LLILWSAD-HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQ 280 (1339)
Q Consensus 207 l~~gH~~~V~sl~wf~~spdg~-~LaSgS~Dg----tVrVWDl~-tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~ 280 (1339)
+. ...-.|..+.. ++++++ +.+++..++ .|..-++. .+. ... +....+.-..+.|+| ++++
T Consensus 275 lT-~G~~~V~~i~~--~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-~~~------LT~~~~~~~~~~~Sp---dg~y 341 (353)
T PF00930_consen 275 LT-SGDWEVTSILG--WDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-PKC------LTCEDGDHYSASFSP---DGKY 341 (353)
T ss_dssp SS--SSS-EEEEEE--EECTSSEEEEEESSGGTTSBEEEEEETTETTE-EEE------SSTTSSTTEEEEE-T---TSSE
T ss_pred cc-cCceeecccce--EcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-eEe------ccCCCCCceEEEECC---CCCE
Confidence 44 45566766643 455554 444665532 44444555 332 222 222222126899999 6776
Q ss_pred EEE
Q 000709 281 LIT 283 (1339)
Q Consensus 281 LaS 283 (1339)
++-
T Consensus 342 ~v~ 344 (353)
T PF00930_consen 342 YVD 344 (353)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 351
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.21 E-value=0.19 Score=65.84 Aligned_cols=89 Identities=12% Similarity=0.118 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChH-HHHHH--
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-AAFSA-- 1095 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-~af~~-- 1095 (1339)
.-|..|...+...|+++.|.+.|++....+ + .....-|..|+-.|+..|+.+...++...+.+.|-..+ ..+.+
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g-~--~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li 367 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSG-V--SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHH
Confidence 378888888888888888888887774433 1 01122466667777777777777777777776662111 11221
Q ss_pred ---HHcCCHHHHHHHHHH
Q 000709 1096 ---AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1096 ---~~lgd~~~~~~~l~~ 1110 (1339)
.-.|+++++.+++.+
T Consensus 368 ~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 368 DLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHCCCHHHHHHHHHh
Confidence 145666666666554
No 352
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.19 E-value=0.17 Score=68.45 Aligned_cols=171 Identities=16% Similarity=0.077 Sum_probs=87.3
Q ss_pred HHhcCCHHHHHHHHHhcCc-------hhhHHHHHHHHhCCcchhhcccccccCccE------------EEeecccccHHH
Q 000709 911 LAAYGDSVSAVKWASRLGR-------EHHDDLAQFMLGMGYATEALHLPGISKRLE------------FDLAMQSNDLKR 971 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~i~~-------~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~------------f~La~~~g~l~~ 971 (1339)
..-.|++++|.+++..+.+ ..++.++..+.+.|..++|+.+..+- ..+ ++.+.+.|+++.
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 3456888888887766221 34677888888888888888876442 211 334566788888
Q ss_pred HHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhh--------hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000709 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQ--------GIVKFAKEFLDLIDAADATGQANIAREALKR 1043 (1339)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~ 1043 (1339)
|+++...|.+. +...+..-.+.|+..=.+..+..++.. ++..+...|..|.+.+...|+++.|.+.|++
T Consensus 668 A~~l~~eM~k~---G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 668 AFEILQDARKQ---GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888766432 111010001111111112211111110 0111223555566666666666666666655
Q ss_pred HHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCC
Q 000709 1044 LAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLG 1088 (1339)
Q Consensus 1044 ~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~ 1088 (1339)
.+..+-. -...-|..|+..|+..|+.+...++.+.+.+.|..
T Consensus 745 M~~~Gi~---Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 745 MKRLGLC---PNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHcCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 5333200 01112455555555566666666665555555543
No 353
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.13 E-value=0.73 Score=63.96 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCCh-HH----HH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-EA----AF 1093 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-~~----af 1093 (1339)
..+..||+.++.+|+++.|+++|+++-... ++.+ .-+..|..+|...|+.++..++.+.+......+ +. +.
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~---~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA---DARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 467789999999999999999999985432 2111 124577888999999999999988877653221 21 11
Q ss_pred HHHHcCCHHHHHHHHHHcCCc----h----HHHHH---HHHhC-CCChHHHHHHHHHHHhhh
Q 000709 1094 SAAILGDNALMEKAWQDTGML----A----EAVLH---AHAHG-RPSLKNLVEAWNKMLQKE 1143 (1339)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~~~~~----~----~A~~~---A~t~~-~~~~~~~~~~w~~~l~~~ 1143 (1339)
+...+|+.+++++++.+.-.. + .|.++ |+.|- .....+.++.|++.|...
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 112789999999888875332 1 22222 44442 235677778888887533
No 354
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.11 E-value=0.071 Score=61.42 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=75.2
Q ss_pred HHHHhcCCHHHHHHHHHh---cCch---hhHHHHHHHHhCCcchhhccccccc----Ccc-----EEEeecccccHHHHH
Q 000709 909 RCLAAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLPGIS----KRL-----EFDLAMQSNDLKRAL 973 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~---i~~~---~~~~~a~fL~~~G~~e~Al~~~~d~----~~~-----~f~La~~~g~l~~a~ 973 (1339)
.++...+|++.|.+...+ +++. ...+++.+ ...|.+++|+.+.... ++. -..++.+.++.+.+.
T Consensus 52 ~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 52 DLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence 445566888888876665 2222 35567777 5778888888766431 111 123455667777777
Q ss_pred HHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000709 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1339)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~ 1053 (1339)
++...+....... ....-|..+|..+...|+.+.|+++|+++-... |+..
T Consensus 131 ~~l~~~~~~~~~~-----------------------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~ 180 (280)
T PF13429_consen 131 ELLEKLEELPAAP-----------------------------DSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDP 180 (280)
T ss_dssp HHHHHHHH-T--------------------------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-H
T ss_pred HHHHHHHhccCCC-----------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence 6665432111000 122689999999999999999999999995543 2100
Q ss_pred ccccchhhhHHHhHhcCChhHHHHHHHHHHHcC----CChHHHHHH--HHcCCHHHHHHHHHHc
Q 000709 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLG----LGREAAFSA--AILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1054 ~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~----~~~~~af~~--~~lgd~~~~~~~l~~~ 1111 (1339)
. -...|+.++...|+.++++++++...... .. ..+|+. ..+|+.++++..|.+.
T Consensus 181 ~---~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~-~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 181 D---ARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDL-WDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp H---HHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCH-CHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHH-HHHHHHHhcccccccccccccccc
Confidence 0 14567778888999999888877776653 22 234443 4899999999998863
No 355
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.02 E-value=0.32 Score=63.07 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=69.0
Q ss_pred EEEEEecCcEEEEEecCCceeecccccc----CCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000709 135 FLVICCVNKAIFLDLVTMRGRDIPKQEL----DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1339)
Q Consensus 135 lLasgs~dg~I~wD~~t~~~~~v~~~~~----h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~g 210 (1339)
.++.-+.+++.+||.+-...+.+ .... ......|++- +.+| +||+|+.+|.||+|| +.+...++...+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v-~~~~k~Y~~~~~Fs~~aT-----t~~G-~iavgs~~G~IRLyd-~~g~~AKT~lp~ 616 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLV-DSQSKQYSSKNNFSCFAT-----TEDG-YIAVGSNKGDIRLYD-RLGKRAKTALPG 616 (794)
T ss_pred eEEEECCCceEEeccCCCCCcee-eccccccccCCCceEEEe-----cCCc-eEEEEeCCCcEEeec-ccchhhhhcCCC
Confidence 56666777788998875322122 1111 2445677776 4444 799999999999999 445555666667
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000709 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 211 H~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~ 245 (1339)
-..+|.+|+ .+.||++|+..+ +..+.+++..
T Consensus 617 lG~pI~~iD---vt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 617 LGDPIIGID---VTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCeeEEE---ecCCCcEEEEee-cceEEEEEEe
Confidence 889999998 899999988755 5567777753
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.98 E-value=6.3 Score=49.96 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=23.7
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEec
Q 000709 24 PWLVTADASDHVSVWNWEHRQVIYELKA 51 (1339)
Q Consensus 24 ~~LaSgs~DGtIrIWDl~tg~~l~~~~~ 51 (1339)
..++.++.|+.|.-.|.++|+.+.++..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 4567778899999999999999988764
No 357
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=94.94 E-value=0.62 Score=57.11 Aligned_cols=169 Identities=15% Similarity=0.063 Sum_probs=100.0
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccc
Q 000709 7 FRPTNDKIVKIQLHPTHPWLVTAD---AS-DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAM 82 (1339)
Q Consensus 7 L~gHs~~V~~vafSPdg~~LaSgs---~D-GtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l 82 (1339)
+..-...+..-+|+|+++.++... .. ..+.++|+.+++....+...........++|++.|+......
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd-------- 259 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD-------- 259 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC--------
Confidence 333445566778999998766542 22 469999999988777666555566667779998887765331
Q ss_pred cCCceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE---EEEecCCceeeccc
Q 000709 83 RGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIPK 159 (1339)
Q Consensus 83 ~~g~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I---~wD~~t~~~~~v~~ 159 (1339)
..-.|.+.|+..++.. .+. +....-..-.|+|||+.++.+.+..|.- +.|........+
T Consensus 260 ----------g~~~iy~~dl~~~~~~-----~Lt-~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri-- 321 (425)
T COG0823 260 ----------GSPDIYLMDLDGKNLP-----RLT-NGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL-- 321 (425)
T ss_pred ----------CCccEEEEcCCCCcce-----ecc-cCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe--
Confidence 1335666677666522 111 1122223667999999666665555543 336655443222
Q ss_pred cccCCCCeEEEEEeeccccCCCCEEEEEECC-Cc--EEEEECCCCeEEEEE
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSD-GV--IRVLSMISWKLVRRY 207 (1339)
Q Consensus 160 ~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D-gt--IrIWDl~t~~~i~~l 207 (1339)
......-.+-.| ||||++|+..+.. |. |.+.|+.++...+.+
T Consensus 322 -T~~~~~~~~p~~-----SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 322 -TFSGGGNSNPVW-----SPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred -eccCCCCcCccC-----CCCCCEEEEEeccCCceeeEEeccCCCCcEEEc
Confidence 222222124455 8999999988743 43 666666555433333
No 358
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=94.89 E-value=0.08 Score=38.94 Aligned_cols=39 Identities=28% Similarity=0.577 Sum_probs=32.2
Q ss_pred CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 201 WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 201 ~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
++++..+. .|...|.++. +.+++..+++++.|+.+++||
T Consensus 2 ~~~~~~~~-~~~~~i~~~~---~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK-GHTGPVTSVA---FSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE-ecCCceeEEE---ECCCCCEEEEecCCCeEEEcC
Confidence 34556665 7889999998 567778999999999999996
No 359
>PLN03077 Protein ECB2; Provisional
Probab=94.86 E-value=0.47 Score=63.74 Aligned_cols=136 Identities=12% Similarity=0.037 Sum_probs=77.5
Q ss_pred HhcCCHHHHHHHHHhcCch---hhHHHHHHHHhCCcchhhccccccc------Cc-cEE----EeecccccHHHHHHHHH
Q 000709 912 AAYGDSVSAVKWASRLGRE---HHDDLAQFMLGMGYATEALHLPGIS------KR-LEF----DLAMQSNDLKRALQCLI 977 (1339)
Q Consensus 912 ~~~~~~~~a~~~~~~i~~~---~~~~~a~fL~~~G~~e~Al~~~~d~------~~-~~f----~La~~~g~l~~a~~~~~ 977 (1339)
...|++++|.+++..+.+. -++.++.-+.+.|..++|+++...- |+ .-| ..+.++|+++.|.++..
T Consensus 334 ~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 3458888888888775432 2677777777888888888765421 00 011 12334677777777766
Q ss_pred hccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccc
Q 000709 978 TMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGH 1057 (1339)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 1057 (1339)
.+.+. +.. .....|..|.+.+.+.|+++.|++.|++...-+ ..
T Consensus 414 ~~~~~---g~~---------------------------~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-------~v 456 (857)
T PLN03077 414 LAERK---GLI---------------------------SYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-------VI 456 (857)
T ss_pred HHHHh---CCC---------------------------cchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-------ee
Confidence 54322 111 001356666677777777777777776662211 11
Q ss_pred chhhhHHHhHhcCChhHHHHHHHHHHH
Q 000709 1058 ELRGLALRLANHGELTRLSGLVTNLIS 1084 (1339)
Q Consensus 1058 d~~~l~ll~~~~g~~~~l~~l~~~a~~ 1084 (1339)
-|..+...|+..|+.++..++.+.+..
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455566666666666655555555543
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.85 E-value=6.7 Score=46.20 Aligned_cols=189 Identities=11% Similarity=0.048 Sum_probs=104.9
Q ss_pred CeEEEEECCCCcEEEEEeccCccceEEec----c-----ccceeEeeccccCCCccccccCCceEEEEEcCCeEEEEEcC
Q 000709 33 DHVSVWNWEHRQVIYELKAGGVDQRRLVG----A-----KLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRFWQLW 103 (1339)
Q Consensus 33 GtIrIWDl~tg~~l~~~~~~~~~~i~~vs----~-----d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~IrlWDl~ 103 (1339)
..|++.|-.+.+.+.++.......+.++. . ...+++.|..-..+... .. ..|.|.++++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~-----~~------~~Gri~v~~i~ 70 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDP-----EP------SSGRILVFEIS 70 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSS-----S-------S-EEEEEEEEC
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccc-----cc------cCcEEEEEEEE
Confidence 35788888887777777655444444443 2 14566666421110000 00 12778888887
Q ss_pred Cc-cccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCc-eeeccccccCCCCeEEEEEeeccccCCC
Q 000709 104 RN-RAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMR-GRDIPKQELDNKSLVCMEFLSRSAVGDV 181 (1339)
Q Consensus 104 ~~-~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~-~~~v~~~~~h~~~V~~vaf~P~s~Spdg 181 (1339)
.. ...............+.|++++-- ++ .++++....+.++++...+ ........ ....+.++.. .+
T Consensus 71 ~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~--~lv~~~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~-------~~ 139 (321)
T PF03178_consen 71 ESPENNFKLKLIHSTEVKGPVTAICSF-NG--RLVVAVGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSV-------FK 139 (321)
T ss_dssp SS-----EEEEEEEEEESS-EEEEEEE-TT--EEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEE-------ET
T ss_pred cccccceEEEEEEEEeecCcceEhhhh-CC--EEEEeecCEEEEEEccCcccchhhheec-ceEEEEEEec-------cc
Confidence 74 100000111222236678888755 34 4666666777777777665 33322222 2337777776 36
Q ss_pred CEEEEEECCCcEEEEECCC-CeEEEEE-ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC
Q 000709 182 PLVAFGSSDGVIRVLSMIS-WKLVRRY-TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH 246 (1339)
Q Consensus 182 ~~LasGs~DgtIrIWDl~t-~~~i~~l-~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t 246 (1339)
++|+.|.....+.++.++. ...+..+ .......++++. +-.+++.++.+..+|.|.++....
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~---~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAE---FLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEE---EE-SSSEEEEEETTSEEEEEEE-S
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEE---EecCCcEEEEEcCCCeEEEEEECC
Confidence 7999999888888885543 3322222 223455677775 332335999999999999998763
No 361
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.72 E-value=11 Score=45.23 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=72.4
Q ss_pred EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEEC---CC-cEEEEECCC-CeEEEEEecCCCCCeeEE
Q 000709 144 AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSS---DG-VIRVLSMIS-WKLVRRYTGGHKGSISCL 218 (1339)
Q Consensus 144 ~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~---Dg-tIrIWDl~t-~~~i~~l~~gH~~~V~sl 218 (1339)
++.+|+.+++.+.+ ......+..+.|+| .|..+|+.|-. +. .-|||-+++ +...+.+. .|.....+-
T Consensus 170 i~~idl~tG~~~~v---~~~~~wlgH~~fsP----~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~-~~~~~e~~g 241 (386)
T PF14583_consen 170 IFTIDLKTGERKVV---FEDTDWLGHVQFSP----TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVH-RRMEGESVG 241 (386)
T ss_dssp EEEEETTT--EEEE---EEESS-EEEEEEET----TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEE
T ss_pred EEEEECCCCceeEE---EecCccccCcccCC----CCCCEEEEeccCCcceeceEEEEEEcCCCcceeee-cCCCCcccc
Confidence 34558887765443 33466788899943 23444555432 22 136665543 33333333 333222222
Q ss_pred EEeeeCCCCCEEEEEe-----CCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC-----
Q 000709 219 MTFMASSGEALLVSGG-----SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK----- 288 (1339)
Q Consensus 219 ~wf~~spdg~~LaSgS-----~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg----- 288 (1339)
.- ++.++|..|.--+ .+..|.-.|..++.... +. .......+-.++ |+.+++-=+.|.
T Consensus 242 HE-fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-------~~-~~p~~~H~~ss~---Dg~L~vGDG~d~p~~v~ 309 (386)
T PF14583_consen 242 HE-FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-------LM-EMPWCSHFMSSP---DGKLFVGDGGDAPVDVA 309 (386)
T ss_dssp EE-EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-------EE-EE-SEEEEEE-T---TSSEEEEEE--------
T ss_pred cc-cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-------EE-eCCceeeeEEcC---CCCEEEecCCCCCcccc
Confidence 11 3678887665422 24456667777664321 11 111122233344 677776544432
Q ss_pred -----------cEEEEECCCCeeEEEecC---CCcccccCC-ceeEEEeCCCCCEE--EEecCCe--EEEcc
Q 000709 289 -----------TLAIWDTVSFKELRRIKP---VPKLACHSV-ASWCHPRAPNLDIL--TCVKDSH--IWAIE 341 (1339)
Q Consensus 289 -----------~IrIWDl~t~~~l~~~~~---~~~l~~H~~-~V~svafspdg~iL--s~s~Dg~--LWDi~ 341 (1339)
-|+++++..++....... ...+.+|.. .=....|+|||+.| .+...|. ||-+.
T Consensus 310 ~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 310 DAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -----------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466788877664321110 001122221 12367899999954 4445553 55443
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.69 E-value=3.5 Score=46.94 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=102.3
Q ss_pred EEEEEEcCCCCEEEEEeCCC--eEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEE
Q 000709 14 IVKIQLHPTHPWLVTADASD--HVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVN 91 (1339)
Q Consensus 14 V~~vafSPdg~~LaSgs~DG--tIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVa 91 (1339)
...+.|..+|.++-+.|.-| .|+.+|+.+|+.+....... +++..|- .+.++.++.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------~~FgEGi---------t~~~d~l~qLT 106 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------RYFGEGI---------TILGDKLYQLT 106 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------T--EEEE---------EEETTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------cccceeE---------EEECCEEEEEE
Confidence 45678877787777777665 89999999999887665332 3333332 23357899999
Q ss_pred EcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccC---CCCeE
Q 000709 92 FYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELD---NKSLV 168 (1339)
Q Consensus 92 F~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h---~~~V~ 168 (1339)
|.++...+||..+.+.+.. ... ...=+.++ .+++.++++-+.+.+..+|..+.+.......... -..++
T Consensus 107 Wk~~~~f~yd~~tl~~~~~----~~y--~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN 178 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGT----FPY--PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN 178 (264)
T ss_dssp SSSSEEEEEETTTTEEEEE----EE---SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred ecCCeEEEEccccceEEEE----Eec--CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence 9999999999988765531 111 12234555 4566688888878777889887654322111112 34677
Q ss_pred EEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000709 169 CMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1339)
Q Consensus 169 ~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l 207 (1339)
.+.|. +|...|-.-....|...|..+|+....+
T Consensus 179 ELE~i------~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 179 ELEYI------NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEE------TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred eEEEE------cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 78884 6777777777888999999999988776
No 363
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.65 E-value=5.9 Score=45.07 Aligned_cols=199 Identities=10% Similarity=0.113 Sum_probs=96.3
Q ss_pred EEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEec--cccceeEeeccccCCCcccc
Q 000709 5 KAFRPTNDKIVKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 5 ~~L~gHs~~V~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
+.+.+-.+.+..++|+|+.. ++++....+.|...+. +|+.++++...+....-.+. .++.++++..
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E---------- 83 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE---------- 83 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET----------
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc----------
Confidence 46677777899999999866 5556667788888886 58899988765433322222 3334443322
Q ss_pred ccCCceEEEEEcCCeEEEEEcCCcccc-c-c---cccc-ccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecC----
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAA-A-A---EAPT-AVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVT---- 151 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrlWDl~~~~~l-~-~---~~~~-~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t---- 151 (1339)
.++.+.+.++...... . . .... ........+-.++|++.++.++++.-.+-..++.+..
T Consensus 84 -----------r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~ 152 (248)
T PF06977_consen 84 -----------RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGG 152 (248)
T ss_dssp -----------TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-S
T ss_pred -----------CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCc
Confidence 2445555554221110 0 0 0000 1112244588999999888677765554433333322
Q ss_pred Cceee-----ccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCC------CCeeEE
Q 000709 152 MRGRD-----IPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYT--GGHK------GSISCL 218 (1339)
Q Consensus 152 ~~~~~-----v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~--~gH~------~~V~sl 218 (1339)
..... ..........+..+.++| ..+++++....+..|..+| .+|+.+..+. .+.. ..--.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~d~S~l~~~p----~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 153 FDLFVSDDQDLDDDKLFVRDLSGLSYDP----RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp S--EEEE-HHHH-HT--SS---EEEEET----TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred cceeeccccccccccceeccccceEEcC----CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEE
Confidence 11110 110122344678899976 3577888888889999999 5576665543 2211 134455
Q ss_pred EEeeeCCCCCEEEEE
Q 000709 219 MTFMASSGEALLVSG 233 (1339)
Q Consensus 219 ~wf~~spdg~~LaSg 233 (1339)
+ +.++|++.+++
T Consensus 228 a---~d~~G~LYIvs 239 (248)
T PF06977_consen 228 A---FDPDGNLYIVS 239 (248)
T ss_dssp E---E-TT--EEEEE
T ss_pred E---ECCCCCEEEEc
Confidence 4 67787666653
No 364
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=94.47 E-value=6.2 Score=46.37 Aligned_cols=214 Identities=12% Similarity=-0.019 Sum_probs=108.7
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCe
Q 000709 18 QLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDD 96 (1339)
Q Consensus 18 afSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~ 96 (1339)
.|.++.. ++.+--..+.|.-||..+++...-........+..+...+.++++ +..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~------------------------~~g 86 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC------------------------EHG 86 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE------------------------ccc
Confidence 5667766 444555678888888876644332222333333333344444333 223
Q ss_pred EEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEe-----cC-----c-EEEEEecCCceeeccccccCCC
Q 000709 97 VRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICC-----VN-----K-AIFLDLVTMRGRDIPKQELDNK 165 (1339)
Q Consensus 97 IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs-----~d-----g-~I~wD~~t~~~~~v~~~~~h~~ 165 (1339)
+.+++...+...........+......+.+...|+|..++-+-+ .. + +.++|.. +.... ....+-.
T Consensus 87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~~~~--l~~~~~~ 163 (307)
T COG3386 87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GGVVR--LLDDDLT 163 (307)
T ss_pred cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CCEEE--eecCcEE
Confidence 33444332222111111222222345566777888873332222 01 2 2244542 22211 2233344
Q ss_pred CeEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCC--C----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCC-
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMIS--W----KLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDG- 237 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~-DgtIrIWDl~t--~----~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg- 237 (1339)
..+.|+| |||++.+..... .+.|.-|++.. + +........+.+..-.++ ...+|++.+++-.+|
T Consensus 164 ~~NGla~-----SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~---vDadG~lw~~a~~~g~ 235 (307)
T COG3386 164 IPNGLAF-----SPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA---VDADGNLWVAAVWGGG 235 (307)
T ss_pred ecCceEE-----CCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceE---EeCCCCEEEecccCCc
Confidence 5677999 889987777654 47787777752 1 211122212334444443 567788776555554
Q ss_pred cEEEEeCCCCCccceecccccccccccceEEEEeec
Q 000709 238 LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 238 tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
.|.+|+.. ++.+..+ .-....+.+++|--
T Consensus 236 ~v~~~~pd-G~l~~~i------~lP~~~~t~~~FgG 264 (307)
T COG3386 236 RVVRFNPD-GKLLGEI------KLPVKRPTNPAFGG 264 (307)
T ss_pred eEEEECCC-CcEEEEE------ECCCCCCccceEeC
Confidence 89999988 7765542 22335577777754
No 365
>PLN03077 Protein ECB2; Provisional
Probab=94.45 E-value=0.77 Score=61.72 Aligned_cols=196 Identities=14% Similarity=0.079 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHHHhcCchh---hHHHHHHHHhCCcchhhcccccccCccE-------E----EeecccccHHHHHHHHH
Q 000709 912 AAYGDSVSAVKWASRLGREH---HDDLAQFMLGMGYATEALHLPGISKRLE-------F----DLAMQSNDLKRALQCLI 977 (1339)
Q Consensus 912 ~~~~~~~~a~~~~~~i~~~~---~~~~a~fL~~~G~~e~Al~~~~d~~~~~-------f----~La~~~g~l~~a~~~~~ 977 (1339)
.-.|++++|.+++..+.+.. ++.++.-+...|..++|+.+...- ... | .-+-++|+++.+.++-.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m-~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHH-HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 34588888888887754432 566777777778888877654331 100 0 11223455555555544
Q ss_pred hccCCCccCCCCCCCCcccccccccccchhhhhhhh---hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccc
Q 000709 978 TMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQG---IVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1339)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~ 1054 (1339)
.+... +...+..-.|.++.+-.|..++.++..- ..++..-|..|...+...|+.+.|.+.|++....+ ++ -
T Consensus 514 ~~~~~---g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g-~~--P 587 (857)
T PLN03077 514 HVLRT---GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESG-VN--P 587 (857)
T ss_pred HHHHh---CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC--C
Confidence 33221 1111111222333333333333322110 11223479999999999999999999999886543 11 1
Q ss_pred cccchhhhHHHhHhcCChhHHHHHHHHHH-HcCC-ChHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHH
Q 000709 1055 QGHELRGLALRLANHGELTRLSGLVTNLI-SLGL-GREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAH 1122 (1339)
Q Consensus 1055 ~~~d~~~l~ll~~~~g~~~~l~~l~~~a~-~~~~-~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~ 1122 (1339)
...-|..|+-.|+..|+.++..++.+... ..|- .+...|.| ++++|.+.|++.||..+-+
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHHHHHHHH
Confidence 22356777778888899999888888887 4443 21223443 3444455555555544433
No 366
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.39 E-value=0.29 Score=53.88 Aligned_cols=179 Identities=17% Similarity=0.016 Sum_probs=111.5
Q ss_pred hcCCHHHHHHHHHh---cCchh---hHHHHHHHHhCCcchhhcc-------cccccCccEE----EeecccccHHHHHHH
Q 000709 913 AYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALH-------LPGISKRLEF----DLAMQSNDLKRALQC 975 (1339)
Q Consensus 913 ~~~~~~~a~~~~~~---i~~~~---~~~~a~fL~~~G~~e~Al~-------~~~d~~~~~f----~La~~~g~l~~a~~~ 975 (1339)
.+||+..|.+-++. ++++. |--+|.+.++.|..+.|-+ +.-+..+.-= =|| +.|+.++|.+-
T Consensus 47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~ 125 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQ 125 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHH
Confidence 45888888776665 55544 6778899999998765533 3222100000 011 22356666655
Q ss_pred HHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccc
Q 000709 976 LITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQ 1055 (1339)
Q Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~ 1055 (1339)
...-.+... ..... .-|.-+|--++++|+++.|++.|+|+
T Consensus 126 F~~Al~~P~--------------------------Y~~~s---~t~eN~G~Cal~~gq~~~A~~~l~ra----------- 165 (250)
T COG3063 126 FERALADPA--------------------------YGEPS---DTLENLGLCALKAGQFDQAEEYLKRA----------- 165 (250)
T ss_pred HHHHHhCCC--------------------------CCCcc---hhhhhhHHHHhhcCCchhHHHHHHHH-----------
Confidence 432111111 11122 57888999999999999999999999
Q ss_pred ccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHH
Q 000709 1056 GHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEA 1135 (1339)
Q Consensus 1056 ~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~ 1135 (1339)
|+....+-..+.+|+..-.++|++ .-|= +++.++..+.. .....+=+.+.+|+.-| =...+.+
T Consensus 166 ---------L~~dp~~~~~~l~~a~~~~~~~~y-~~Ar--~~~~~~~~~~~--~~A~sL~L~iriak~~g---d~~~a~~ 228 (250)
T COG3063 166 ---------LELDPQFPPALLELARLHYKAGDY-APAR--LYLERYQQRGG--AQAESLLLGIRIAKRLG---DRAAAQR 228 (250)
T ss_pred ---------HHhCcCCChHHHHHHHHHHhcccc-hHHH--HHHHHHHhccc--ccHHHHHHHHHHHHHhc---cHHHHHH
Confidence 556778888899999999999988 2221 22222222211 11112235778999888 4567789
Q ss_pred HHHHHhhhcCCCCc
Q 000709 1136 WNKMLQKEVDHTPT 1149 (1339)
Q Consensus 1136 w~~~l~~~~~~~~~ 1149 (1339)
|...|++.-..++.
T Consensus 229 Y~~qL~r~fP~s~e 242 (250)
T COG3063 229 YQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHhCCCcHH
Confidence 99999988766655
No 367
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=94.37 E-value=0.23 Score=66.89 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChH-----HHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-----AAF 1093 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-----~af 1093 (1339)
.-|..+|..+...|+++.|+++|+++.... ++.+. -+..|..+|...|+.+....+.+.+.+..-.+. .+.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~---a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSN---YQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 577888888888888888888888885443 22221 234566677778888888888777776543211 111
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 000709 1094 SAAILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~~ 1111 (1339)
+...+||++++++.|.+.
T Consensus 686 al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 686 VNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 223778888887777654
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.37 E-value=2.6 Score=53.88 Aligned_cols=236 Identities=14% Similarity=0.096 Sum_probs=119.2
Q ss_pred CCCCEEEEEeCC------CeEEEEECCCCcEEEEEeccCccceEE-eccccceeEeeccccCCCccccccCCceEEEEEc
Q 000709 21 PTHPWLVTADAS------DHVSVWNWEHRQVIYELKAGGVDQRRL-VGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1339)
Q Consensus 21 Pdg~~LaSgs~D------GtIrIWDl~tg~~l~~~~~~~~~~i~~-vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~ 93 (1339)
..+.+++.||.+ ..+..+|..+++............... +..++...+.|+.+. +. ..
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~-~~-------~~------- 347 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDS-GS-------DR------- 347 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccC-CC-------cc-------
Confidence 345577777766 467888888775544333222222222 225566667776542 00 11
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE------EEEecCCceeeccccccCCCCe
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI------FLDLVTMRGRDIPKQELDNKSL 167 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I------~wD~~t~~~~~v~~~~~h~~~V 167 (1339)
-..+-.||...++... ..+.........+. .-+|. +.++|+.|+.- ++|..+.+...+..........
T Consensus 348 l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v~----~l~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~ 421 (571)
T KOG4441|consen 348 LSSVERYDPRTNQWTP-VAPMNTKRSDFGVA----VLDGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH 421 (571)
T ss_pred cceEEEecCCCCceec-cCCccCccccceeE----EECCE-EEEEeccccccccccEEEecCCCCcccccCCCCcceeee
Confidence 1344455555554332 11111111111111 12465 77888877643 5566665554433222222333
Q ss_pred EEEEEeeccccCCCCEEEEEECCC------cEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-
Q 000709 168 VCMEFLSRSAVGDVPLVAFGSSDG------VIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL- 238 (1339)
Q Consensus 168 ~~vaf~P~s~Spdg~~LasGs~Dg------tIrIWDl~t~~~i--~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt- 238 (1339)
..+.+ +|.+.++|+.++ ++..||..+.+.. ..+.....+ ..++ .-++.+.+.|+.|+.
T Consensus 422 gv~~~-------~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~--~g~a----~~~~~iYvvGG~~~~~ 488 (571)
T KOG4441|consen 422 GVAVL-------GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG--FGVA----VLNGKIYVVGGFDGTS 488 (571)
T ss_pred EEEEE-------CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc--ceEE----EECCEEEEECCccCCC
Confidence 33444 688888888554 5778888765433 222211111 1122 126778888888763
Q ss_pred ----EEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC-----cEEEEECCCCe
Q 000709 239 ----LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-----TLAIWDTVSFK 299 (1339)
Q Consensus 239 ----VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-----~IrIWDl~t~~ 299 (1339)
|..+|..+.+... ...+......+..+.+ ++...+.|+.|+ +|..||..+.+
T Consensus 489 ~~~~VE~ydp~~~~W~~----v~~m~~~rs~~g~~~~-----~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 489 ALSSVERYDPETNQWTM----VAPMTSPRSAVGVVVL-----GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ccceEEEEcCCCCceeE----cccCccccccccEEEE-----CCEEEEEecccCccccceeEEcCCCCCc
Confidence 7778887765322 2222222222322332 467788888776 45566655443
No 369
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.18 E-value=3.9 Score=48.11 Aligned_cols=56 Identities=25% Similarity=0.306 Sum_probs=40.2
Q ss_pred cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC-EEEEE-eCCCcEEEEeCCCCCccce
Q 000709 192 VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA-LLVSG-GSDGLLILWSADHGQDSRE 252 (1339)
Q Consensus 192 tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~-~LaSg-S~DgtVrVWDl~tg~~~~~ 252 (1339)
.|.+||+.+++.+.++.- ...+.+|. .+.+.+ +|++. ..++.+.+||..+|+.++.
T Consensus 270 eVWv~D~~t~krv~Ri~l--~~~~~Si~---Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL--EHPIDSIA---VSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--EEEESEEE---EESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred EEEEEECCCCeEEEEEeC--CCccceEE---EccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 488889999999999862 34577776 455544 55544 4589999999999987665
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=94.01 E-value=0.81 Score=59.51 Aligned_cols=141 Identities=8% Similarity=0.008 Sum_probs=91.4
Q ss_pred CCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCC-----CCCEEEEEeCCCcEEEEeCCCCC--ccc
Q 000709 180 DVPLVAFG-SSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS-----GEALLVSGGSDGLLILWSADHGQ--DSR 251 (1339)
Q Consensus 180 dg~~LasG-s~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~sp-----dg~~LaSgS~DgtVrVWDl~tg~--~~~ 251 (1339)
+.+.|+.- .....|+-.|++.|+.+..+.-.....|..++ ... +...-+.|-.+..+..||.+-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~---p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA---PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec---ccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 34444443 35678999999999999999733334466664 111 23345667888999999998643 221
Q ss_pred eecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEE
Q 000709 252 ELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC 331 (1339)
Q Consensus 252 ~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~ 331 (1339)
. ....+ .......|++-.. .-+||.|+.+|.||+||- .|+.-++ .+.+...+|..|..+.||++|.+
T Consensus 569 ~--~~k~Y-~~~~~Fs~~aTt~----~G~iavgs~~G~IRLyd~-~g~~AKT-----~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 569 S--QSKQY-SSKNNFSCFATTE----DGYIAVGSNKGDIRLYDR-LGKRAKT-----ALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred c--ccccc-ccCCCceEEEecC----CceEEEEeCCCcEEeecc-cchhhhh-----cCCCCCCCeeEEEecCCCcEEEE
Confidence 1 11111 1233456666543 569999999999999994 3332222 25677889999999999997765
Q ss_pred ecCCe
Q 000709 332 VKDSH 336 (1339)
Q Consensus 332 s~Dg~ 336 (1339)
..+..
T Consensus 636 Tc~ty 640 (794)
T PF08553_consen 636 TCKTY 640 (794)
T ss_pred eecce
Confidence 55554
No 371
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.93 E-value=0.5 Score=62.47 Aligned_cols=165 Identities=14% Similarity=-0.032 Sum_probs=105.2
Q ss_pred HHHhcCCHHHHHHHHHhc----C--chhhHHHHHHHHhCCcchhhccccccc----Cc------cEEEeecccccHHHHH
Q 000709 910 CLAAYGDSVSAVKWASRL----G--REHHDDLAQFMLGMGYATEALHLPGIS----KR------LEFDLAMQSNDLKRAL 973 (1339)
Q Consensus 910 ~~~~~~~~~~a~~~~~~i----~--~~~~~~~a~fL~~~G~~e~Al~~~~d~----~~------~~f~La~~~g~l~~a~ 973 (1339)
+....|++++|.+++... | ...+..++..+..+|..++|+.+.... |+ ....+.++.|+++.|.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344558888887766551 1 123667777788888888777654221 11 1123445667777777
Q ss_pred HHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000709 974 QCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1339)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~ 1053 (1339)
+++..+.... .. ....|..+|..+..+|+++.|.++|+++-... ++.
T Consensus 690 ~~~~~~~~~~-~~------------------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~- 736 (899)
T TIGR02917 690 KIAKSLQKQH-PK------------------------------AALGFELEGDLYLRQKDYPAAIQAYRKALKRA-PSS- 736 (899)
T ss_pred HHHHHHHhhC-cC------------------------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCc-
Confidence 7776543321 00 11477888999999999999999999874332 111
Q ss_pred ccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-----HHcCCHHHHHHHHHH
Q 000709 1054 LQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-----AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1054 ~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-----~~lgd~~~~~~~l~~ 1110 (1339)
..+..+..+|...|+.++..++...+......+..++.. ..+|+.+++++++.+
T Consensus 737 ---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 737 ---QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred ---hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 234567788888999988888887777655442322222 257899998888765
No 372
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=93.89 E-value=0.55 Score=56.40 Aligned_cols=87 Identities=18% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChH-HHHH----
Q 000709 1020 EFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-AAFS---- 1094 (1339)
Q Consensus 1020 ~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-~af~---- 1094 (1339)
-|..||..++.+|+++.|+++|+++.... ++ ...-+..|..+|...|+.++..++.+.+...+-.+. .++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQ---CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 35556666667777777777777663221 10 001123345566666776666666666655432211 1111
Q ss_pred H-HHcCCHHHHHHHHHH
Q 000709 1095 A-AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1095 ~-~~lgd~~~~~~~l~~ 1110 (1339)
+ ...|+.+++++.|.+
T Consensus 258 ~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 258 CYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 1 145666666665554
No 373
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.82 E-value=2.5 Score=41.82 Aligned_cols=106 Identities=19% Similarity=0.255 Sum_probs=69.5
Q ss_pred eEEEEEeeccccCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000709 167 LVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 167 V~~vaf~P~s~Spd-g~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~ 245 (1339)
|+++++... ..+ .+.|++||.|..||+|+-. ..+..+. -.+.|.+++ .-.+..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~--d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~----~~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDF--DGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLC----SLGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEec--CCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEE----EcCCCEEEEEecCCEEEEEeCc
Confidence 556666431 222 2679999999999999744 5666664 556788886 2234789999999999999864
Q ss_pred CCCccceecccccccccccceEEEEeeccC-CCCCEEEEEeCCCcEE
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVM-GGSPQLITIGADKTLA 291 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~-~dg~~LaSgs~Dg~Ir 291 (1339)
... .. .+. +..+.++.+.... ++-+-|++|-.+|.|-
T Consensus 72 ~Rl--WR------iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 72 QRL--WR------IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cee--ee------ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 322 11 122 2337777766532 2235789999998874
No 374
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=93.63 E-value=0.57 Score=61.91 Aligned_cols=170 Identities=15% Similarity=0.060 Sum_probs=97.9
Q ss_pred HhHHHHhcCCHHHHHHHHHh---c---CchhhHHHHHHHHhCCcchhhcccccccCcc-------EE---EeecccccHH
Q 000709 907 RCRCLAAYGDSVSAVKWASR---L---GREHHDDLAQFMLGMGYATEALHLPGISKRL-------EF---DLAMQSNDLK 970 (1339)
Q Consensus 907 ~~~~~~~~~~~~~a~~~~~~---i---~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~-------~f---~La~~~g~l~ 970 (1339)
+-+....+|++++|...+.+ + ..+.+..++.-+..+|-.++|+......... .. .+....|+++
T Consensus 28 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 28 AAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHH
Confidence 34556667888888877765 1 2233566777777788888887643321111 11 1234567777
Q ss_pred HHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 000709 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1339)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~ 1050 (1339)
.|++.+...... ..+ .....|..+|..+...|+++.|+++|+++.... +
T Consensus 108 ~a~~~~~~~~~~---~~~---------------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 156 (899)
T TIGR02917 108 QVLDELPGKTLL---DDE---------------------------GAAELLALRGLAYLGLGQLELAQKSYEQALAID-P 156 (899)
T ss_pred HHHHhhcccccC---Cch---------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 777766422100 000 012466777888888888888888888774332 1
Q ss_pred cccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-----HHcCCHHHHHHHHHH
Q 000709 1051 KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-----AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1051 ~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-----~~lgd~~~~~~~l~~ 1110 (1339)
+. ..-+-.+..+|...|+.++..++.+.+......+..++.. ...||.+++++.+.+
T Consensus 157 ~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 218 (899)
T TIGR02917 157 RS---LYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK 218 (899)
T ss_pred CC---hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 1134566777777888888777777776654331222221 156777776665543
No 375
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.62 E-value=0.62 Score=60.10 Aligned_cols=93 Identities=9% Similarity=-0.030 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-ccccc--ccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHH
Q 000709 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSV-KGALQ--GHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS 1094 (1339)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~-~~~~~--~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~ 1094 (1339)
..-|..+|.....+|+++.|+++|+++.....- .+... ..-+.....+|...|+.++..++.+.|....-.+..++.
T Consensus 467 ~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~ 546 (615)
T TIGR00990 467 PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVA 546 (615)
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 356777888888888888888888887333100 00000 000111222334467777777777776655433222222
Q ss_pred H-----HHcCCHHHHHHHHHH
Q 000709 1095 A-----AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1095 ~-----~~lgd~~~~~~~l~~ 1110 (1339)
. +.+|+++++++.+.+
T Consensus 547 ~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 547 TMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHH
Confidence 1 266777777776654
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.57 E-value=3.6 Score=48.47 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=86.7
Q ss_pred CeEEEEEec----------CcEE-EEEecCC-----ceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 133 RHFLVICCV----------NKAI-FLDLVTM-----RGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 133 ~~lLasgs~----------dg~I-~wD~~t~-----~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
..++++|.. .|.+ ++++... +.+.+. .....+.|+++.-. +.+|+.+ .++.|.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~-~~~~~g~V~ai~~~-------~~~lv~~-~g~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH-STEVKGPVTAICSF-------NGRLVVA-VGNKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE-EEEESS-EEEEEEE-------TTEEEEE-ETTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE-EEeecCcceEhhhh-------CCEEEEe-ecCEEEEE
Confidence 457776642 1555 4477663 332222 23347889998772 3345555 35789999
Q ss_pred ECCCCe-EEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCC-CccceecccccccccccceEEEEeecc
Q 000709 197 SMISWK-LVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHG-QDSRELVPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 197 Dl~t~~-~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg-~~~~~~~~~~~l~gH~~~V~svafsp~ 274 (1339)
++...+ ....-.......+.++.. .+++++.|.....|.++..+.. ..+..+ . -......++++.|-+
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~-----~~~~I~vgD~~~sv~~~~~~~~~~~l~~v---a-~d~~~~~v~~~~~l~- 182 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSV-----FKNYILVGDAMKSVSLLRYDEENNKLILV---A-RDYQPRWVTAAEFLV- 182 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEE-----ETTEEEEEESSSSEEEEEEETTTE-EEEE---E-EESS-BEEEEEEEE--
T ss_pred EccCcccchhhheecceEEEEEEec-----cccEEEEEEcccCEEEEEEEccCCEEEEE---E-ecCCCccEEEEEEec-
Confidence 998776 554433234447777763 2669999999899988755442 111110 0 122345688888886
Q ss_pred CCCCCEEEEEeCCCcEEEEECC
Q 000709 275 MGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 275 ~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
+++.++.+..+|.|.++...
T Consensus 183 --d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 183 --DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp --SSSEEEEEETTSEEEEEEE-
T ss_pred --CCcEEEEEcCCCeEEEEEEC
Confidence 34699999999999999875
No 377
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.56 E-value=1.9 Score=52.50 Aligned_cols=231 Identities=11% Similarity=0.042 Sum_probs=138.6
Q ss_pred HHHhHHHHhcCCHHHHHHHHHh---cCchhh-H---HHHHHHHhCCcchhhcc----cccccCcc------EEEeecccc
Q 000709 905 GIRCRCLAAYGDSVSAVKWASR---LGREHH-D---DLAQFMLGMGYATEALH----LPGISKRL------EFDLAMQSN 967 (1339)
Q Consensus 905 ~~~~~~~~~~~~~~~a~~~~~~---i~~~~~-~---~~a~fL~~~G~~e~Al~----~~~d~~~~------~f~La~~~g 967 (1339)
.+.-+.+..+|+++.|.+++.. .+++.. . ..+++...+|-++.|++ +....|++ ..++.++.|
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3334556788999999998876 333321 1 23778888999999987 33333443 367778899
Q ss_pred cHHHHHHHHHhccCCCccCCCCCCCCcccc-----ccccc---ccchhh---hhhhhhh----hhHHHHHHHHHHHHHcC
Q 000709 968 DLKRALQCLITMSNSRDIGQDHPGLDLNDI-----LTLTT---KKENIV---EAVQGIV----KFAKEFLDLIDAADATG 1032 (1339)
Q Consensus 968 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~---~~~~~~~----~~~~~w~~l~~~al~~g 1032 (1339)
+.+.|++++..+.+....+.+ ++.++ +.+.. .+++.. +....+. ++..-+-.++......|
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEE----HRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 999999888776544222111 11110 01111 111100 0001111 12334555799999999
Q ss_pred CHHHHHHHHHHHHhcCCccccccccchhhhHHHhHh--cCChhHHHHHHHHHHHcCCChHH-HHH----HHHcCCHHHHH
Q 000709 1033 QANIAREALKRLAAAGSVKGALQGHELRGLALRLAN--HGELTRLSGLVTNLISLGLGREA-AFS----AAILGDNALME 1105 (1339)
Q Consensus 1033 ~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~--~g~~~~l~~l~~~a~~~~~~~~~-af~----~~~lgd~~~~~ 1105 (1339)
+.+.|++.++++-... .-..|+++|.. .|+.++..+.++...++.-.+.. .+. |.-.|+.+++.
T Consensus 278 ~~~~A~~~L~~~l~~~---------~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 278 DHDTAQQIILDGLKRQ---------YDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred CHHHHHHHHHHHHhcC---------CCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999884422 34566666664 48877777776665554433122 222 12789999999
Q ss_pred HHHHHcCCc----hHHHHHHHHhCC-CChHHHHHHHHHHHhhhcCCCC
Q 000709 1106 KAWQDTGML----AEAVLHAHAHGR-PSLKNLVEAWNKMLQKEVDHTP 1148 (1339)
Q Consensus 1106 ~~l~~~~~~----~~A~~~A~t~~~-~~~~~~~~~w~~~l~~~~~~~~ 1148 (1339)
+.|.+.=.. .-..++|+.|-. ....+..+.|++.|.......|
T Consensus 349 ~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 396 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTLQNNP 396 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcccCC
Confidence 888776332 323567777665 3457778888888775544433
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.50 E-value=34 Score=45.10 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=92.9
Q ss_pred CCEEEEEEC----------CCcEEEEECCCCeEEEEEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000709 181 VPLVAFGSS----------DGVIRVLSMISWKLVRRYT-GGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1339)
Q Consensus 181 g~~LasGs~----------DgtIrIWDl~t~~~i~~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~ 249 (1339)
+.++++|.. .|.|.+|.+...+.++... ..-.+.+.++.-| +|+++| +-...|++|++.+++.
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f----ngkllA--~In~~vrLye~t~~~e 860 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF----NGKLLA--GINQSVRLYEWTTERE 860 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh----CCeEEE--ecCcEEEEEEccccce
Confidence 678888763 4778888887643333332 1235667777533 676766 5677999999988865
Q ss_pred cceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC--CCeeEEEecCCCcccccCCceeEEEeCCCCC
Q 000709 250 SRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--SFKELRRIKPVPKLACHSVASWCHPRAPNLD 327 (1339)
Q Consensus 250 ~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~--t~~~l~~~~~~~~l~~H~~~V~svafspdg~ 327 (1339)
++. -..|..++..+...- .++.|+.|..=+++.+.-.+ .|.....- -..|..+.+++.+-.+..
T Consensus 861 Lr~------e~~~~~~~~aL~l~v---~gdeI~VgDlm~Sitll~y~~~eg~f~evA-----rD~~p~Wmtaveil~~d~ 926 (1096)
T KOG1897|consen 861 LRI------ECNISNPIIALDLQV---KGDEIAVGDLMRSITLLQYKGDEGNFEEVA-----RDYNPNWMTAVEILDDDT 926 (1096)
T ss_pred ehh------hhcccCCeEEEEEEe---cCcEEEEeeccceEEEEEEeccCCceEEee-----hhhCccceeeEEEecCce
Confidence 443 245677788888877 78899999988877765544 33332221 256777777888777766
Q ss_pred EEEEecCCeEEEcc
Q 000709 328 ILTCVKDSHIWAIE 341 (1339)
Q Consensus 328 iLs~s~Dg~LWDi~ 341 (1339)
++.+-.+|.++-++
T Consensus 927 ylgae~~gNlf~v~ 940 (1096)
T KOG1897|consen 927 YLGAENSGNLFTVR 940 (1096)
T ss_pred EEeecccccEEEEE
Confidence 77666677655444
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.39 E-value=4.4 Score=49.82 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=79.9
Q ss_pred CeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EE--EecCCceeeccccccCCCCeEEEE
Q 000709 95 DDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FL--DLVTMRGRDIPKQELDNKSLVCME 171 (1339)
Q Consensus 95 g~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~w--D~~t~~~~~v~~~~~h~~~V~~va 171 (1339)
..+.++|+.+++..... .....-...+|+|||+.++.+...|+.. +| |..+.....+ .+...+.+
T Consensus 218 ~~i~~~~l~~g~~~~i~------~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L----t~~~gi~~-- 285 (425)
T COG0823 218 PRIYYLDLNTGKRPVIL------NFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL----TNGFGINT-- 285 (425)
T ss_pred ceEEEEeccCCccceee------ccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec----ccCCcccc--
Confidence 35888898887653211 1123344568999999888888888766 33 7776653222 22222222
Q ss_pred EeeccccCCCCEEEEEECCC---cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-Cc--EEEEeCC
Q 000709 172 FLSRSAVGDVPLVAFGSSDG---VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-GL--LILWSAD 245 (1339)
Q Consensus 172 f~P~s~Spdg~~LasGs~Dg---tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-gt--VrVWDl~ 245 (1339)
+| +++|||++|+..++.+ .|.++|++.....+... .-.... .-. .+|+|++|+..+.. |. |.+.|+.
T Consensus 286 -~P-s~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~-~p~---~SpdG~~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 286 -SP-SWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNS-NPV---WSPDGDKIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred -Cc-cCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCc-Ccc---CCCCCCEEEEEeccCCceeeEEeccC
Confidence 22 2389999999887543 46677777665533322 222222 332 68999999887753 44 5556665
Q ss_pred CCC
Q 000709 246 HGQ 248 (1339)
Q Consensus 246 tg~ 248 (1339)
++.
T Consensus 359 ~~~ 361 (425)
T COG0823 359 SGG 361 (425)
T ss_pred CCC
Confidence 554
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.38 E-value=36 Score=44.88 Aligned_cols=203 Identities=12% Similarity=0.082 Sum_probs=99.4
Q ss_pred Ceeeee--eCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC
Q 000709 122 GFASPP--PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 122 ~V~sla--fspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~ 199 (1339)
.++.+. ++++-..+++.+--+.+..+.+... ......... ......+..+ .-.++.|+-... ..||+++-.
T Consensus 406 g~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e-~ee~~~~gf-~~~~~Tif~S----~i~g~~lvQvTs-~~iRl~ss~ 478 (1096)
T KOG1897|consen 406 GMWSLKSMVDENYDNYLVLSFISETRVLNISEE-VEETEDPGF-STDEQTIFCS----TINGNQLVQVTS-NSIRLVSSA 478 (1096)
T ss_pred ceeEeeccccccCCcEEEEEeccceEEEEEccc-eEEeccccc-cccCceEEEE----ccCCceEEEEec-ccEEEEcch
Confidence 456666 5555555777777777776644332 222111111 1122222221 123444554433 347887754
Q ss_pred CCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCC
Q 000709 200 SWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP 279 (1339)
Q Consensus 200 t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~ 279 (1339)
.....+. ..+.+++.. .+.+...++.++.++.+...++..+..... . -+..+..|.|+.++|..++..
T Consensus 479 --~~~~~W~--~p~~~ti~~---~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~--~---~~~~e~evaCLDisp~~d~~~ 546 (1096)
T KOG1897|consen 479 --GLRSEWR--PPGKITIGV---VSANASQVVVAGGGLALFYLEIEDGGLREV--S---HKEFEYEVACLDISPLGDAPN 546 (1096)
T ss_pred --hhhhccc--CCCceEEEE---EeecceEEEEecCccEEEEEEeeccceeee--e---eheecceeEEEecccCCCCCC
Confidence 1222332 223333332 233555777777777777777776652111 0 122346799999998533334
Q ss_pred ---EEEEEeCCCcEEEEE-CCCCeeEEEecCCCcccccCCceeEEEeCCCCC-EEEEecCCe----EEEccCCcc
Q 000709 280 ---QLITIGADKTLAIWD-TVSFKELRRIKPVPKLACHSVASWCHPRAPNLD-ILTCVKDSH----IWAIEHPTY 345 (1339)
Q Consensus 280 ---~LaSgs~Dg~IrIWD-l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~-iLs~s~Dg~----LWDi~t~~~ 345 (1339)
+++.|..+..+.+-- +.+...+.... .....-...|.-..+--|.. ++++..||. +.|..++..
T Consensus 547 ~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~--l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~l 619 (1096)
T KOG1897|consen 547 KSRLLAVGLWSDISMILTFLPDLILITHEQ--LSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQL 619 (1096)
T ss_pred cceEEEEEeecceEEEEEECCCcceeeeec--cCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceE
Confidence 888888777665443 23332222210 00111112233334444344 457778886 456666543
No 381
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.31 E-value=26 Score=43.02 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=40.1
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF 221 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf 221 (1339)
.+.+..|+. ||++++++.-..+|.+.+.+..-.+....+...-......+.|+
T Consensus 216 ~~~i~~iav-----Spng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC 268 (410)
T PF04841_consen 216 DGPIIKIAV-----SPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC 268 (410)
T ss_pred CCCeEEEEE-----CCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE
Confidence 457899999 88999999999999999988765566655543334556677775
No 382
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.35 Score=59.56 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=73.7
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCee-EEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSIS-CLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~-sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
...|.-+.| +|.-.+||.+..+|.|.+..+. ++.+.++. -|...++ +++| .|||++|+.|-.||+|++-
T Consensus 20 ~~~i~~~ew-----nP~~dLiA~~t~~gelli~R~n-~qRlwtip-~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEW-----NPKMDLIATRTEKGELLIHRLN-WQRLWTIP-IPGENVTASLCW---RPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEE-----cCccchhheeccCCcEEEEEec-cceeEecc-CCCCccceeeee---cCCCCEEEEEecCCeEEEE
Confidence 346777899 6788899999999999999988 88888885 5777777 9985 7899999999999999999
Q ss_pred eCCCCCccceecccccccccccceEEEEeec
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSR 273 (1339)
Q Consensus 243 Dl~tg~~~~~~~~~~~l~gH~~~V~svafsp 273 (1339)
|+.++..+..+ ...-...|.++-|.+
T Consensus 90 Dve~~~~l~~~-----~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSF-----LFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceecc-----ccccccchheeeccc
Confidence 99988765431 111233455555654
No 383
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.24 E-value=24 Score=42.47 Aligned_cols=147 Identities=14% Similarity=0.022 Sum_probs=72.3
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEE---EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAI---FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVL 196 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I---~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIW 196 (1339)
....+.=+|.++|+.+|..+..++.- .+|+.+++..++......+ .....+ +++++.++-...+..++-.
T Consensus 35 ~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~--~~g~~~-----s~~~~~~~Yv~~~~~l~~v 107 (386)
T PF14583_consen 35 RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDN--TFGGFL-----SPDDRALYYVKNGRSLRRV 107 (386)
T ss_dssp ---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE------TTSSEEEEEETTTEEEEE
T ss_pred ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCC--ccceEE-----ecCCCeEEEEECCCeEEEE
Confidence 34555667889998777777655533 4599998766553322211 112334 5778888777677789999
Q ss_pred ECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC----------------------CcEEEEeCCCCCccceec
Q 000709 197 SMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD----------------------GLLILWSADHGQDSRELV 254 (1339)
Q Consensus 197 Dl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D----------------------gtVrVWDl~tg~~~~~~~ 254 (1339)
|+.+.+....+. .....+-...|. .+.++..++-.-.. ..|.--|+.+|+..
T Consensus 108 dL~T~e~~~vy~-~p~~~~g~gt~v-~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~---- 181 (386)
T PF14583_consen 108 DLDTLEERVVYE-VPDDWKGYGTWV-ANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK---- 181 (386)
T ss_dssp ETTT--EEEEEE---TTEEEEEEEE-E-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE----
T ss_pred ECCcCcEEEEEE-CCccccccccee-eCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee----
Confidence 999886554443 455555445453 45566666543211 23444455555421
Q ss_pred ccccccccccceEEEEeeccCCCCCEEEEE
Q 000709 255 PKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1339)
Q Consensus 255 ~~~~l~gH~~~V~svafsp~~~dg~~LaSg 284 (1339)
++..-...+..+.|+|. +..+|+-|
T Consensus 182 ---~v~~~~~wlgH~~fsP~--dp~li~fC 206 (386)
T PF14583_consen 182 ---VVFEDTDWLGHVQFSPT--DPTLIMFC 206 (386)
T ss_dssp ---EEEEESS-EEEEEEETT--EEEEEEEE
T ss_pred ---EEEecCccccCcccCCC--CCCEEEEe
Confidence 12223456788999993 44444444
No 384
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=19 Score=43.60 Aligned_cols=204 Identities=11% Similarity=0.040 Sum_probs=129.4
Q ss_pred EEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEc
Q 000709 15 VKIQLHPTHP-WLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFY 93 (1339)
Q Consensus 15 ~~vafSPdg~-~LaSgs~DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~ 93 (1339)
.++++++.++ ..++...++.|.+.|..+.+.+.....+....-..+.+++..+....... .
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~------------------~ 138 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN------------------G 138 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc------------------C
Confidence 4678888888 44455557999999988888888887666555555566766555443110 2
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEE-EEEecCCceeeccc---cccCCCCeEE
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK---QELDNKSLVC 169 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I-~wD~~t~~~~~v~~---~~~h~~~V~~ 169 (1339)
++.+.+.|..+++.+.. ...+. .+ ..++++|+|...+++-..++.+ .+|........ .. ..........
T Consensus 139 ~~~vsvid~~t~~~~~~---~~vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~ 211 (381)
T COG3391 139 NNTVSVIDAATNKVTAT---IPVGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAG 211 (381)
T ss_pred CceEEEEeCCCCeEEEE---EecCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCce
Confidence 56677777766655431 11111 22 7789999998666666567777 55866554321 11 1222445667
Q ss_pred EEEeeccccCCCCEEEEEECC---CcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CCcEEEEeCC
Q 000709 170 MEFLSRSAVGDVPLVAFGSSD---GVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DGLLILWSAD 245 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~D---gtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-DgtVrVWDl~ 245 (1339)
+.+ ++++.++...... +.+...|..++.....-...-......+. .+|+|..+.+... .+.|.+-|..
T Consensus 212 i~v-----~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~---~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 212 IAV-----DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVA---VDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred EEE-----CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCcee---ECCCCCEEEEEecCCCeEEEEeCC
Confidence 888 7889876665443 58999999988776652211111334443 7899998888744 4888888888
Q ss_pred CCCccc
Q 000709 246 HGQDSR 251 (1339)
Q Consensus 246 tg~~~~ 251 (1339)
+.....
T Consensus 284 ~~~v~~ 289 (381)
T COG3391 284 TDRVVK 289 (381)
T ss_pred CCceee
Confidence 766543
No 385
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.07 E-value=28 Score=42.73 Aligned_cols=62 Identities=18% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCc
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQD 249 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~ 249 (1339)
+....+....++.+.+.+-...+. + ...+.+..++ .||+++++|.-..+|.+.+....-.+.
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i--~~~~~i~~ia---vSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---I--DSDGPIIKIA---VSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---c--cCCCCeEEEE---ECCCCCEEEEEECCCCEEEEECcccce
Confidence 444444445555555444322111 2 2345788887 899999999999999999887655443
No 386
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.99 E-value=0.62 Score=60.13 Aligned_cols=163 Identities=9% Similarity=-0.039 Sum_probs=107.3
Q ss_pred cCCHHHHHHHHHh-cC-----c---hhhHHHHHHHHhCCcchhhcccccc----cCccE---EE---eecccccHHHHHH
Q 000709 914 YGDSVSAVKWASR-LG-----R---EHHDDLAQFMLGMGYATEALHLPGI----SKRLE---FD---LAMQSNDLKRALQ 974 (1339)
Q Consensus 914 ~~~~~~a~~~~~~-i~-----~---~~~~~~a~fL~~~G~~e~Al~~~~d----~~~~~---f~---La~~~g~l~~a~~ 974 (1339)
.+++++|++++.. +. + ..+..++.++..+|.+++|+..... .|+.- +. +.+++|+++.|++
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 4788888887765 21 1 1267778888899999988864321 12211 22 2347788999988
Q ss_pred HHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccc
Q 000709 975 CLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1339)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~ 1054 (1339)
.....-.. +. .+...|..+|......|+++.|.++|+++.... ++.+.
T Consensus 387 ~~~~al~~-~p------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 387 DFDKALKL-NS------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHHHHHHh-CC------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 87532111 00 112689999999999999999999999995442 21111
Q ss_pred cccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHH-----HHHcCCHHHHHHHHHHc
Q 000709 1055 QGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFS-----AAILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1055 ~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~-----~~~lgd~~~~~~~l~~~ 1111 (1339)
-+..|..+|...|+.+....+.+.+....-.+..++. ...+|+++++++.+.+.
T Consensus 435 ---~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 435 ---SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 1345778888999999999998888775433121221 12678888888877653
No 387
>PHA02713 hypothetical protein; Provisional
Probab=92.96 E-value=7 Score=49.89 Aligned_cols=146 Identities=7% Similarity=0.045 Sum_probs=77.3
Q ss_pred CCCeEEEEEecCc-----EE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-------------
Q 000709 131 KGRHFLVICCVNK-----AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG------------- 191 (1339)
Q Consensus 131 dg~~lLasgs~dg-----~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg------------- 191 (1339)
+++ +.+.|+.++ .+ ++|..+.+...+............+.+ ++.+.+.|+.++
T Consensus 351 ~g~-IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~-------~g~IYviGG~~~~~~~~~~~~~~~~ 422 (557)
T PHA02713 351 DDT-IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL-------DQYIYIIGGRTEHIDYTSVHHMNSI 422 (557)
T ss_pred CCE-EEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE-------CCEEEEEeCCCcccccccccccccc
Confidence 455 666676543 23 568777655444332222222233334 577777777542
Q ss_pred ----------cEEEEECCCCeEE--EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC------CcEEEEeCCC-CCccce
Q 000709 192 ----------VIRVLSMISWKLV--RRYTGGHKGSISCLMTFMASSGEALLVSGGSD------GLLILWSADH-GQDSRE 252 (1339)
Q Consensus 192 ----------tIrIWDl~t~~~i--~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D------gtVrVWDl~t-g~~~~~ 252 (1339)
.+..||..+.+.. ..+..+... .+++ .-++.+.+.|+.+ ..|..||..+ .+.
T Consensus 423 ~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~--~~~~----~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W--- 493 (557)
T PHA02713 423 DMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR--PGVV----SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW--- 493 (557)
T ss_pred cccccccccceEEEECCCCCeEeecCCCCccccc--CcEE----EECCEEEEEeCCCCCCccceeEEEecCCCCCCe---
Confidence 4778998765442 222211111 1222 1256777777754 2467788887 442
Q ss_pred ecccccccccccceEEEEeeccCCCCCEEEEEeCCC--cEEEEECCCCe
Q 000709 253 LVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK--TLAIWDTVSFK 299 (1339)
Q Consensus 253 ~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg--~IrIWDl~t~~ 299 (1339)
.....+.........+.+ ++.+.+.||.|+ ++..||..+.+
T Consensus 494 -~~~~~m~~~r~~~~~~~~-----~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 494 -ELITTTESRLSALHTILH-----DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -eEccccCcccccceeEEE-----CCEEEEEeeecceeehhhcCccccc
Confidence 222223322222333333 468889999888 66777776544
No 388
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.93 E-value=1.6 Score=47.02 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=25.5
Q ss_pred HHHhcCCHHHHHHHHHh---cCc---hhhHHHHHHHHhCCcchhhcc
Q 000709 910 CLAAYGDSVSAVKWASR---LGR---EHHDDLAQFMLGMGYATEALH 950 (1339)
Q Consensus 910 ~~~~~~~~~~a~~~~~~---i~~---~~~~~~a~fL~~~G~~e~Al~ 950 (1339)
+....|++++|.+++.. ..+ ..+..++..+..+|..++|+.
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34567999999988765 221 124556666666666665554
No 389
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.76 E-value=0.34 Score=62.75 Aligned_cols=103 Identities=19% Similarity=0.260 Sum_probs=71.2
Q ss_pred EEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCC
Q 000709 135 FLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGS 214 (1339)
Q Consensus 135 lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~ 214 (1339)
+++.|++.|-+.....+++............+|++++| +.+|.+++.|-.+|.|.+||+..++.++.+. .|..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvaf-----n~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap 174 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAF-----NQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAP 174 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEe-----cCCCceeccccCCCcEEEEEccCCcceeeee-ecCCc
Confidence 67888877777552223333222223344789999999 7899999999999999999999999888886 66666
Q ss_pred eeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000709 215 ISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 215 V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~ 245 (1339)
+..+-......++..+.++...|. +|.+.
T Consensus 175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 665532223344456777666665 66653
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.63 E-value=31 Score=42.09 Aligned_cols=257 Identities=14% Similarity=0.136 Sum_probs=119.4
Q ss_pred CEEEEEEcCCCCEEEEE-eCC----CeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCce
Q 000709 13 KIVKIQLHPTHPWLVTA-DAS----DHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSV 87 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSg-s~D----GtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V 87 (1339)
.+....+||+|++||-+ +.. .+|+|.|+++|+.+...-...........++++.+.-...+...... ..+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~---~~~-- 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTS---DSG-- 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS----CCG--
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccc---cCC--
Confidence 34467899999988855 333 46999999999876543111111112233555555444332211100 000
Q ss_pred EEEEEcCCeEEEEEcCCccccccccccccccCCCC-eeeeeeCCCCCeEEEEEecCcE---E-EEEecCC---ceeeccc
Q 000709 88 KQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSG-FASPPPSTKGRHFLVICCVNKA---I-FLDLVTM---RGRDIPK 159 (1339)
Q Consensus 88 ~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~-V~slafspdg~~lLasgs~dg~---I-~wD~~t~---~~~~v~~ 159 (1339)
....|+.|++.+...-- .....+..... ...+..+++++.+++....... + .+|.... ... ...
T Consensus 200 -----~~~~v~~~~~gt~~~~d--~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~-~~~ 271 (414)
T PF02897_consen 200 -----YPRQVYRHKLGTPQSED--ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK-PKL 271 (414)
T ss_dssp -----CCEEEEEEETTS-GGG---EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S-EEE
T ss_pred -----CCcEEEEEECCCChHhC--eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC-cEE
Confidence 14457777776653320 01111221222 5678899999865554443332 3 3376653 111 111
Q ss_pred cccCCCCe-EEEEEeeccccCCCCEEEEEE---CCCcEEEEECCCCe---EEEEEecCCCC--CeeEEEEeeeCCCCCEE
Q 000709 160 QELDNKSL-VCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMISWK---LVRRYTGGHKG--SISCLMTFMASSGEALL 230 (1339)
Q Consensus 160 ~~~h~~~V-~~vaf~P~s~Spdg~~LasGs---~DgtIrIWDl~t~~---~i~~l~~gH~~--~V~sl~wf~~spdg~~L 230 (1339)
.......+ ..+.. . .+.+++... .++.|.-.++.... ....+. .|.. .+..+..+ .+.++
T Consensus 272 l~~~~~~~~~~v~~-----~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~----~~~Lv 340 (414)
T PF02897_consen 272 LSPREDGVEYYVDH-----H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLF----KDYLV 340 (414)
T ss_dssp EEESSSS-EEEEEE-----E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEE----TTEEE
T ss_pred EeCCCCceEEEEEc-----c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEE----CCEEE
Confidence 12222333 33444 1 233333332 33567677777554 222333 4544 34444311 33455
Q ss_pred EEEeCCC--cEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC---CCcEEEEECCCCee
Q 000709 231 VSGGSDG--LLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA---DKTLAIWDTVSFKE 300 (1339)
Q Consensus 231 aSgS~Dg--tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~---Dg~IrIWDl~t~~~ 300 (1339)
++-..++ .|+++++..+...... .+.. .+.|..+...+ ....+.++.+. -.++..||+.+++.
T Consensus 341 l~~~~~~~~~l~v~~~~~~~~~~~~----~~p~-~g~v~~~~~~~--~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 341 LSYRENGSSRLRVYDLDDGKESREI----PLPE-AGSVSGVSGDF--DSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETTEEEEEEEETT-TEEEEEE----ESSS-SSEEEEEES-T--T-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEEEECCccEEEEEECCCCcEEeee----cCCc-ceEEeccCCCC--CCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 5555554 4778888822222211 1121 23355555544 23344444443 46788889888774
No 391
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=92.57 E-value=0.25 Score=54.21 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=45.1
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcc
Q 000709 181 VPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDS 250 (1339)
Q Consensus 181 g~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~ 250 (1339)
+..+++|+.+|.|.+|++............-...|-++- ..-.++.+.++++.||.||.|++.-++.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I--p~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI--PNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceecc--ccccccceeEEeccCCceeeeccccCcee
Confidence 667999999999999998732111111112233444442 23455668999999999999999876643
No 392
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.04 E-value=0.35 Score=40.30 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Q 000709 11 NDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVI 46 (1339)
Q Consensus 11 s~~V~~vafSPdg~~LaSgs~DGtIrIWDl~tg~~l 46 (1339)
...|.+++|+|+.++||.|..+|.|.|+.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 467999999999999999999999999998 55543
No 393
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=0.54 Score=57.97 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=59.0
Q ss_pred eCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceE-EEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeE
Q 000709 223 ASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVV-AVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1339)
Q Consensus 223 ~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~-svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1339)
++|.-.++|.+..+|.|.+..++ .+.+.+ +.-|...++ +++|.| ||+.|+.|-.||+|++.|+.++..+
T Consensus 28 wnP~~dLiA~~t~~gelli~R~n-~qRlwt------ip~p~~~v~~sL~W~~---DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 28 WNPKMDLIATRTEKGELLIHRLN-WQRLWT------IPIPGENVTASLCWRP---DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred EcCccchhheeccCCcEEEEEec-cceeEe------ccCCCCccceeeeecC---CCCEEEEEecCCeEEEEEccCCCce
Confidence 57888999999999999998887 444443 344555666 999999 8999999999999999999998877
Q ss_pred EE
Q 000709 302 RR 303 (1339)
Q Consensus 302 ~~ 303 (1339)
..
T Consensus 98 ~~ 99 (665)
T KOG4640|consen 98 VS 99 (665)
T ss_pred ec
Confidence 65
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=91.88 E-value=3.9 Score=40.44 Aligned_cols=98 Identities=14% Similarity=0.154 Sum_probs=65.7
Q ss_pred eCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000709 128 PSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRR 206 (1339)
Q Consensus 128 fspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~ 206 (1339)
|..+|+.-|++|++|..|++ +-.. +.......+.|.++.-+ .+..++.+..+|+|-+|+-. ..+-+
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~~e-----~~~Ei~e~~~v~~L~~~------~~~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKGDE-----IVAEITETDKVTSLCSL------GGGRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeCCc-----EEEEEecccceEEEEEc------CCCEEEEEecCCEEEEEeCc--ceeee
Confidence 45567778999999999976 3221 11123345678888773 34679999999999999853 22333
Q ss_pred EecCCCCCeeEEEEeeeCCCC-CEEEEEeCCCcEE
Q 000709 207 YTGGHKGSISCLMTFMASSGE-ALLVSGGSDGLLI 240 (1339)
Q Consensus 207 l~~gH~~~V~sl~wf~~spdg-~~LaSgS~DgtVr 240 (1339)
.. .++.++++.++.+..+| .-|++|-.+|.|-
T Consensus 77 iK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 32 44558888866555444 3688888888764
No 395
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.85 E-value=0.46 Score=61.65 Aligned_cols=105 Identities=17% Similarity=0.284 Sum_probs=73.2
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccc
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSL 259 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l 259 (1339)
-+.+++.|++.|.+-..|+...-........-.++|++++ |+.+|.+++.|-.+|.|.+||+..++..+. +
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsva---fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~------i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVA---FNQDGSLLLAGLGDGHVTVWDMHRAKILKV------I 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeE---ecCCCceeccccCCCcEEEEEccCCcceee------e
Confidence 3567999999999999998753111111113467999998 899999999999999999999999887654 3
Q ss_pred cccccceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 260 KAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 260 ~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
..|..++.++-++-...++..++++..-|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 444444444444332224556777777776 5654
No 396
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.66 E-value=1.2 Score=57.16 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~ 1048 (1339)
..|++|++....+|++..|.-||-|+--.+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 699999999999999999999999995443
No 397
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.64 E-value=0.9 Score=58.51 Aligned_cols=145 Identities=16% Similarity=0.127 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHhcCchhhHHHHHHHHhCCcchhhcccccccCccEEEeec--------ccccHHHHHHHHHhccCCCccC
Q 000709 915 GDSVSAVKWASRLGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAM--------QSNDLKRALQCLITMSNSRDIG 986 (1339)
Q Consensus 915 ~~~~~a~~~~~~i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~--------~~g~l~~a~~~~~~~~~~~~~~ 986 (1339)
-|-..+++++.+++.---+.||.--...+.+|||..+. .|||+-. ..++||+|.+.|.....
T Consensus 1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~if-----kkf~~n~~A~~VLie~i~~ldRA~efAe~~n~----- 1103 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIF-----KKFDMNVSAIQVLIENIGSLDRAYEFAERCNE----- 1103 (1666)
T ss_pred cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHH-----HHhcccHHHHHHHHHHhhhHHHHHHHHHhhCC-----
Confidence 45566667777766655666777767777777777654 3344432 25788888888864322
Q ss_pred CCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHh
Q 000709 987 QDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRL 1066 (1339)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~ 1066 (1339)
+ ..|.+||.+-|.+|.+..|.+.|-|+.|-. .|....-..
T Consensus 1104 -p------------------------------~vWsqlakAQL~~~~v~dAieSyikadDps---------~y~eVi~~a 1143 (1666)
T KOG0985|consen 1104 -P------------------------------AVWSQLAKAQLQGGLVKDAIESYIKADDPS---------NYLEVIDVA 1143 (1666)
T ss_pred -h------------------------------HHHHHHHHHHHhcCchHHHHHHHHhcCCcH---------HHHHHHHHH
Confidence 2 699999999999999999999999994443 778888899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCh----HHHHHHHHcCCHHHHHHHHH
Q 000709 1067 ANHGELTRLSGLVTNLISLGLGR----EAAFSAAILGDNALMEKAWQ 1109 (1339)
Q Consensus 1067 ~~~g~~~~l~~l~~~a~~~~~~~----~~af~~~~lgd~~~~~~~l~ 1109 (1339)
..+|+-+.|-+-+-+|.+..+-. ..-|+.+-+|...+..+.+.
T Consensus 1144 ~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~ 1190 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIA 1190 (1666)
T ss_pred HhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhc
Confidence 99999999999999998866421 22344456777777666554
No 398
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.27 E-value=1.9 Score=52.51 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred EEEEEecCcEEEEEecCCceeeccccccC----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecC
Q 000709 135 FLVICCVNKAIFLDLVTMRGRDIPKQELD----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGG 210 (1339)
Q Consensus 135 lLasgs~dg~I~wD~~t~~~~~v~~~~~h----~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~g 210 (1339)
-|+.-+++++.+||++-.....+...+.| .....|.+- . ..-+|++||.+|.||+||- .+...++..++
T Consensus 397 TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT-----T-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPg 469 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT-----T-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPG 469 (644)
T ss_pred cEEeecCCceEEecccccCcceeeeeeccccccccccceeee-----c-CCceEEEeecCCcEEeehh-hhhhhhhcccc
Confidence 45666777777998763322112122222 223445554 2 3458999999999999996 67777777678
Q ss_pred CCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCC
Q 000709 211 HKGSISCLMTFMASSGEALLVSGGSDGLLILWSAD 245 (1339)
Q Consensus 211 H~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~ 245 (1339)
....|..+. .+.+|++|+..+ +..+.+-++.
T Consensus 470 LG~~I~hVd---vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVD---VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEE---eeccCcEEEEec-ccEEEEEEEe
Confidence 899999997 788999887644 5566666653
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.26 E-value=8.7 Score=46.91 Aligned_cols=268 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred eeeeCCCCCeEEEEEecCcEEEE-----------EecCCceeeccccccCC-CCeEEEEEeec------cccCCCCEEEE
Q 000709 125 SPPPSTKGRHFLVICCVNKAIFL-----------DLVTMRGRDIPKQELDN-KSLVCMEFLSR------SAVGDVPLVAF 186 (1339)
Q Consensus 125 slafspdg~~lLasgs~dg~I~w-----------D~~t~~~~~v~~~~~h~-~~V~~vaf~P~------s~Spdg~~Las 186 (1339)
.++.+|+++ +++.+..++.+++ +..+............. ..|+++.|.|. ...+|...|+.
T Consensus 6 ~isls~~~d-~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~V 84 (415)
T PF14655_consen 6 SISLSPDGD-LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAV 84 (415)
T ss_pred eEEecCCCC-EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEE
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCC------------------------------------CEE
Q 000709 187 GSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE------------------------------------ALL 230 (1339)
Q Consensus 187 Gs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg------------------------------------~~L 230 (1339)
|..+|.|++|. ++|..+..-. -|..+|..+. ..... +.+
T Consensus 85 G~ssG~vrfyt-e~G~LL~~Q~-~h~~pV~~ik---~~~~~~~~~~~~~~eel~ily~~~v~~Idg~sL~~~L~~~~~~~ 159 (415)
T PF14655_consen 85 GTSSGYVRFYT-ENGVLLLSQL-LHEEPVLKIK---CRSTKIPRHPGDSSEELSILYPSAVVIIDGFSLFSVLRACRNQV 159 (415)
T ss_pred EecccEEEEEe-ccchHHHHHh-cCccceEEEE---ecccCCCCCCcccccEEEEEECCEEEEEecHHHHHHHHHHHHhh
Q ss_pred EEEeCCC---------cEEEEeCCCCCccceecccccccccccceE----------EEEeeccCCCCCEEEEEeCCCcEE
Q 000709 231 VSGGSDG---------LLILWSADHGQDSRELVPKLSLKAHDGGVV----------AVELSRVMGGSPQLITIGADKTLA 291 (1339)
Q Consensus 231 aSgS~Dg---------tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~----------svafsp~~~dg~~LaSgs~Dg~Ir 291 (1339)
+.+..++ ..+.|.++....+.............-.-. .+.-++ .....++++|.+-.+-
T Consensus 160 ~~~~~~~~~~~~~~~L~ykKw~l~~~~~i~D~~~~G~~~~~~fd~l~~aS~~gf~a~~~~s~--~~~~~~i~~G~~P~v~ 237 (415)
T PF14655_consen 160 ARGAASGSDSPAPPPLSYKKWNLQSQDTINDAAICGPMPPSTFDHLVTASIGGFNAKYRSSP--PRMSRYITVGSSPFVS 237 (415)
T ss_pred hhhhhcccccCCCCccceeEecCCCCCcEeeEEEecCCCCcHHHHHHhhhcccccceeecCC--cceEEEEEecCCceEE
Q ss_pred EEECCCCeeEEEecC-----------------------------------------------CCcccccCCceeEEEeCC
Q 000709 292 IWDTVSFKELRRIKP-----------------------------------------------VPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 292 IWDl~t~~~l~~~~~-----------------------------------------------~~~l~~H~~~V~svafsp 324 (1339)
.|-...+..-..+.. ...+......+.++..+|
T Consensus 238 f~~~~e~~s~~~ls~va~~aVas~l~sav~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~l~D~~R~~~~i~~sP 317 (415)
T PF14655_consen 238 FYYASEGSSQPLLSDVASSAVASKLTSAVSGWLGWGSWRSEQQPQEKQPPEPKPEPAAPLPMRFGLPDSKREGESICLSP 317 (415)
T ss_pred EEEccCCCCcccHHHHHHHHHHHHHHhhhHhhcccCCCCCccccccccccccCcCCCcccceEEeeccCCceEEEEEECC
Q ss_pred CCCEEEEecC-Ce--EEEccCCcccccccCccccCCCCCCeEEccCCcccEEEEEEecCCCc-----------------E
Q 000709 325 NLDILTCVKD-SH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPH-----------------L 384 (1339)
Q Consensus 325 dg~iLs~s~D-g~--LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~la~sp~~~~-----------------l 384 (1339)
++.+++.+++ |+ |+|+.++ .-+..+++..+..+.-+........ +
T Consensus 318 ~~~laA~tDslGRV~LiD~~~~---------------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 318 SGRLAAVTDSLGRVLLIDVARG---------------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCCEEEEEcCCCcEEEEECCCC---------------hhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Q ss_pred EEEEECCCeEEEEecCCCCCCccccCCCCCCC
Q 000709 385 VATGTNVGVIISEFDPRSLPAVAPLPTPSGSR 416 (1339)
Q Consensus 385 LatGs~DG~IlriWd~~~~p~i~~~~~~~~s~ 416 (1339)
++-.-.-|.| .+|.++..+.+..+....+.+
T Consensus 383 vIyaprRg~l-EvW~~~~g~Rv~a~~v~k~~r 413 (415)
T PF14655_consen 383 VIYAPRRGIL-EVWSMRQGPRVAAFNVGKGCR 413 (415)
T ss_pred EEEeccCCeE-EEEecCCCCEEEEEEeCCCcE
No 400
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=91.20 E-value=1.6 Score=60.55 Aligned_cols=186 Identities=20% Similarity=0.168 Sum_probs=105.7
Q ss_pred HHhcCCHHHHHHHHHhc------CchhhHHHHHHHHhCCcchhhcccccccCcc--------------------EEEeec
Q 000709 911 LAAYGDSVSAVKWASRL------GREHHDDLAQFMLGMGYATEALHLPGISKRL--------------------EFDLAM 964 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~i------~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~--------------------~f~La~ 964 (1339)
....|++++|++.+.++ ..+.+...+.|+..+|..++|+.....-+.. +-+..+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44557777777766551 1233556667777777777776543221111 011234
Q ss_pred ccccHHHHHHHHHhccCCCccCCCCCCCCccccccccc---ccchhhhhhhhhh-------hhHHHHHHHHHHHHHcCCH
Q 000709 965 QSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTT---KKENIVEAVQGIV-------KFAKEFLDLIDAADATGQA 1034 (1339)
Q Consensus 965 ~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~w~~l~~~al~~g~~ 1034 (1339)
..|+.++|++++..- . +.. ++ .+.+.. ++.+..+++...- .+..-|..|+......|++
T Consensus 585 ~~G~~~eA~~~l~~~--p---~~~----~~--~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ--P---PST----RI--DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HCCCHHHHHHHHHhC--C---CCc----hH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 566777777766521 0 000 00 111111 2222222221111 1336788999999999999
Q ss_pred HHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCCh-----H-HHH-----HHHHcCCHHH
Q 000709 1035 NIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----E-AAF-----SAAILGDNAL 1103 (1339)
Q Consensus 1035 ~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-----~-~af-----~~~~lgd~~~ 1103 (1339)
+.|+++|+++.... +.. ..-...+..+|...|+.++..++.+.+....... + ..+ .....|+.++
T Consensus 654 ~eA~~~l~~ll~~~-p~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 654 AAARAQLAKLPATA-NDS---LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred HHHHHHHHHHhccC-CCC---hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 99999999884321 100 0123457788889999999999988887753210 1 111 1126789999
Q ss_pred HHHHHHHc
Q 000709 1104 MEKAWQDT 1111 (1339)
Q Consensus 1104 ~~~~l~~~ 1111 (1339)
+++.|.+.
T Consensus 730 A~~~y~~A 737 (1157)
T PRK11447 730 ALETYKDA 737 (1157)
T ss_pred HHHHHHHH
Confidence 99988765
No 401
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.63 E-value=17 Score=47.58 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=53.8
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEEEecC----------C----ceeecccc-----ccCCCCeEEEEEeeccccCC
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFLDLVT----------M----RGRDIPKQ-----ELDNKSLVCMEFLSRSAVGD 180 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~wD~~t----------~----~~~~v~~~-----~~h~~~V~~vaf~P~s~Spd 180 (1339)
.-.|..+.++++|+ +++..+..++.++.+.. + .|+.+... ..+...|..+.|||. +.+
T Consensus 84 ~f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~--s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW--SES 160 (717)
T ss_pred ceeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC--CCC
Confidence 34688899999998 66666667766543311 1 11111111 122458999999996 567
Q ss_pred CCEEEEEECCCcEEEEECCCC
Q 000709 181 VPLVAFGSSDGVIRVLSMISW 201 (1339)
Q Consensus 181 g~~LasGs~DgtIrIWDl~t~ 201 (1339)
+..|+.-+.|+++|+||+...
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCeEEEEecCCEEEEEecCCC
Confidence 889999999999999999753
No 402
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=90.57 E-value=8.1 Score=42.83 Aligned_cols=87 Identities=10% Similarity=-0.053 Sum_probs=55.2
Q ss_pred CEEEEEeCCCcEEEEe--CCCCCccceecccccccc----cccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeE
Q 000709 228 ALLVSGGSDGLLILWS--ADHGQDSRELVPKLSLKA----HDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL 301 (1339)
Q Consensus 228 ~~LaSgS~DgtVrVWD--l~tg~~~~~~~~~~~l~g----H~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l 301 (1339)
.+-.+-+.+-+|.-|| ..+|..... ...+.++. ..-..-.+++.. +|.+.++.-..++|...|..+|+.+
T Consensus 171 ~fY~iDsln~~V~a~dyd~~tG~~snr-~~i~dlrk~~~~e~~~PDGm~ID~---eG~L~Va~~ng~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 171 KFYYIDSLNYEVDAYDYDCPTGDLSNR-KVIFDLRKSQPFESLEPDGMTIDT---EGNLYVATFNGGTVQKVDPTTGKIL 246 (310)
T ss_pred EEEEEccCceEEeeeecCCCcccccCc-ceeEEeccCCCcCCCCCCcceEcc---CCcEEEEEecCcEEEEECCCCCcEE
Confidence 3455667788898888 556554321 01111111 011123344444 6888888889999999999999999
Q ss_pred EEecCCCcccccCCceeEEEeCC
Q 000709 302 RRIKPVPKLACHSVASWCHPRAP 324 (1339)
Q Consensus 302 ~~~~~~~~l~~H~~~V~svafsp 324 (1339)
..++. .+..++|++|--
T Consensus 247 ~eikl------Pt~qitsccFgG 263 (310)
T KOG4499|consen 247 LEIKL------PTPQITSCCFGG 263 (310)
T ss_pred EEEEc------CCCceEEEEecC
Confidence 88642 266788888853
No 403
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=90.53 E-value=3.9 Score=44.10 Aligned_cols=146 Identities=11% Similarity=0.001 Sum_probs=88.3
Q ss_pred hHHHHHHHHhCCcchhhccccccc----Cc---c---EEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccc
Q 000709 932 HDDLAQFMLGMGYATEALHLPGIS----KR---L---EFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLT 1001 (1339)
Q Consensus 932 ~~~~a~fL~~~G~~e~Al~~~~d~----~~---~---~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1001 (1339)
+..++..+..+|..++|+...... |. . .-.+.+..|+++.|++.....-.. .
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~--------------- 95 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL---N--------------- 95 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---C---------------
Confidence 445666666677776666543210 11 1 112445678888888776532110 0
Q ss_pred cccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHH
Q 000709 1002 TKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTN 1081 (1339)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~ 1081 (1339)
-.....|..+|.....+|+++.|++.|+++..... ......-+..+..+|...|+.+...+..+.
T Consensus 96 -------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 96 -------------PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL--YPQPARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred -------------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc--cccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 01125788899999999999999999999843210 001111345577888899999999888888
Q ss_pred HHHcCCChHHHHHH-----HHcCCHHHHHHHHHH
Q 000709 1082 LISLGLGREAAFSA-----AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1082 a~~~~~~~~~af~~-----~~lgd~~~~~~~l~~ 1110 (1339)
+......+..++.. ...|+.+++++.+.+
T Consensus 161 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 161 ALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87765432212111 256777777776664
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.52 E-value=31 Score=39.86 Aligned_cols=199 Identities=11% Similarity=0.028 Sum_probs=113.6
Q ss_pred CCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCce-eeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEE
Q 000709 120 TSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRG-RDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLS 197 (1339)
Q Consensus 120 ~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~-~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWD 197 (1339)
...+.++.|+|+.+.++++....-.+++ +.+ |+. +.++..-. ...-.|+| ..++.++++--.++.+.++.
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~--~DpE~Iey-----ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGF--SDPETIEY-----IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEeccccc--CChhHeEE-----ecCCEEEEEehhcceEEEEE
Confidence 4449999999999977777777777766 443 433 22222222 23345777 45677777777888888887
Q ss_pred CCCCeEEEE-----Ee---cCC-CCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccccccccc------
Q 000709 198 MISWKLVRR-----YT---GGH-KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAH------ 262 (1339)
Q Consensus 198 l~t~~~i~~-----l~---~gH-~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH------ 262 (1339)
+.....+.. +. ..+ +...-.++ .++....|..+-.-.-++++.+..+...-. ......+
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA---~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~---~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLA---WDPVDHRLFVAKERNPIGIFEVTQSPSSLS---VHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeee---cCCCCceEEEEEccCCcEEEEEecCCcccc---cccccCcccccce
Confidence 764422111 11 123 55667787 477777777777777777777664331110 0001111
Q ss_pred -ccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCce---eEEEeCCCCCEEEEecCC
Q 000709 263 -DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVAS---WCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 263 -~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V---~svafspdg~iLs~s~Dg 335 (1339)
-..|.++.|++ ..+.+|+-+..++.+.-.|.. |..+..+.......+-+..| -.++..++|.+-..|+-+
T Consensus 231 f~~DvSgl~~~~--~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 231 FVLDVSGLEFNA--ITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred EeeccccceecC--CCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 13477888988 366777777788888888865 44344433222223333322 245555555544444333
No 405
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=90.47 E-value=1.9 Score=47.36 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHH-HhHhcCC--hhHHHHHHHHHHHcCCChHHHH--
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLAL-RLANHGE--LTRLSGLVTNLISLGLGREAAF-- 1093 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~l-l~~~~g~--~~~l~~l~~~a~~~~~~~~~af-- 1093 (1339)
+-|..||..++..|+++.|.+||+++.... ++.+- -+..+.. +|...|+ .++..++.+.+.+..-.+..++
T Consensus 74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~---~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~ 149 (198)
T PRK10370 74 EQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAE---LYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALML 149 (198)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHH
Confidence 799999999999999999999999995543 21111 1233444 3455566 4788888888888776533332
Q ss_pred ---HHHHcCCHHHHHHHHHHc
Q 000709 1094 ---SAAILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1094 ---~~~~lgd~~~~~~~l~~~ 1111 (1339)
.++.+||++++++.|.+.
T Consensus 150 LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 150 LASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 223788888888888753
No 406
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=90.44 E-value=26 Score=41.25 Aligned_cols=201 Identities=12% Similarity=-0.003 Sum_probs=105.0
Q ss_pred cCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEEEecCCce-eeccccc--cCCCCeEE
Q 000709 93 YDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRG-RDIPKQE--LDNKSLVC 169 (1339)
Q Consensus 93 ~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~wD~~t~~~-~~v~~~~--~h~~~V~~ 169 (1339)
..+.|.-|+..+++... . ...+.+.++..-..+. . +.++..+..+++..++.. ..+.... ......+.
T Consensus 45 ~~~~i~r~~~~~g~~~~-----~--~~p~~~~~~~~~d~~g-~-Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 45 LGGRIHRLDPETGKKRV-----F--PSPGGFSSGALIDAGG-R-LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred CCCeEEEecCCcCceEE-----E--ECCCCcccceeecCCC-e-EEEEccccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 46677777776553321 0 0112223333222332 3 344555666666554443 2111111 11345566
Q ss_pred EEEeeccccCCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC-CC
Q 000709 170 MEFLSRSAVGDVPLVAFGSS-----------DGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS-DG 237 (1339)
Q Consensus 170 vaf~P~s~Spdg~~LasGs~-----------DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~-Dg 237 (1339)
+.. .|+|.+.++-.. -|.++.+|. .+..++.+. .|-..-+.++ +|||++.|..+.. .+
T Consensus 116 ~~v-----~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~-~~~~~~NGla---~SpDg~tly~aDT~~~ 185 (307)
T COG3386 116 GVV-----DPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLD-DDLTIPNGLA---FSPDGKTLYVADTPAN 185 (307)
T ss_pred eeE-----cCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeec-CcEEecCceE---ECCCCCEEEEEeCCCC
Confidence 777 567876665433 133444443 455555544 5556667787 7999977776655 47
Q ss_pred cEEEEeCCC--CCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCC-cEEEEECCCCeeEEEecCCCcccccC
Q 000709 238 LLILWSADH--GQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADK-TLAIWDTVSFKELRRIKPVPKLACHS 314 (1339)
Q Consensus 238 tVrVWDl~t--g~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg-~IrIWDl~t~~~l~~~~~~~~l~~H~ 314 (1339)
.|.-|++.. +..... ........+.+..-.++... ++.+.+++..+| .|.+|+.. ++.+..+. -..
T Consensus 186 ~i~r~~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDa---dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~------lP~ 254 (307)
T COG3386 186 RIHRYDLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDA---DGNLWVAAVWGGGRVVRFNPD-GKLLGEIK------LPV 254 (307)
T ss_pred eEEEEecCcccCccCCc-ceEEEccCCCCCCCceEEeC---CCCEEEecccCCceEEEECCC-CcEEEEEE------CCC
Confidence 888887763 211110 01111222345555666665 677765555554 89999988 88777743 222
Q ss_pred CceeEEEeC
Q 000709 315 VASWCHPRA 323 (1339)
Q Consensus 315 ~~V~svafs 323 (1339)
..+++++|-
T Consensus 255 ~~~t~~~Fg 263 (307)
T COG3386 255 KRPTNPAFG 263 (307)
T ss_pred CCCccceEe
Confidence 445566664
No 407
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=90.41 E-value=2 Score=48.35 Aligned_cols=112 Identities=16% Similarity=0.103 Sum_probs=84.1
Q ss_pred ecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000709 963 AMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALK 1042 (1339)
Q Consensus 963 a~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~ 1042 (1339)
.+..|++..|..-++.....+.. +.+-|-.||-.+++.|+++.|+..|.
T Consensus 110 ~~~~g~~~~A~~~~rkA~~l~p~-------------------------------d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAARLAPT-------------------------------DWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred HHHhcchHHHHHHHHHHhccCCC-------------------------------ChhhhhHHHHHHHHccChhHHHHHHH
Confidence 57788889888888754332111 22689999999999999999999999
Q ss_pred HHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChH-----HHHHHHHcCCHHHHHHHHH
Q 000709 1043 RLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGRE-----AAFSAAILGDNALMEKAWQ 1109 (1339)
Q Consensus 1043 ~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~-----~af~~~~lgd~~~~~~~l~ 1109 (1339)
++-.+. +++.. =+..|..+|...||++..+++..-+...+..+. .+|+--.-||+.++.++-.
T Consensus 159 qAl~L~-~~~p~---~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 159 QALELA-PNEPS---IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHhc-cCCch---hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 996554 33332 357899999999999999999999999887423 2333337888888887754
No 408
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=90.30 E-value=3.1 Score=55.29 Aligned_cols=182 Identities=16% Similarity=0.013 Sum_probs=109.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-------hhhHHHHHHHHhCCcchhhcccc----cccCcc-------EEE---eecccc
Q 000709 909 RCLAAYGDSVSAVKWASRLGR-------EHHDDLAQFMLGMGYATEALHLP----GISKRL-------EFD---LAMQSN 967 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i~~-------~~~~~~a~fL~~~G~~e~Al~~~----~d~~~~-------~f~---La~~~g 967 (1339)
..++.+|++++|++.+..+-+ .-...++..+..+|-+++|+.+. ...+.. ... +.++.|
T Consensus 245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 245 GALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 345778999999987776322 22334788889999999998642 221221 111 335779
Q ss_pred cHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000709 968 DLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1339)
Q Consensus 968 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1339)
++++|++.+..+..... .. .. ++.+.... ++-. ...-+..++.....+|+.+.|+++|+++...
T Consensus 325 ~~~eA~~~l~~~~~~~P-~~------~~-~~~~~~~~-------p~~~-~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 325 NYPGALTVTAHTINNSP-PF------LR-LYGSPTSI-------PNDD-WLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred cHHHHHHHHHHHhhcCC-ce------Ee-ecCCCCCC-------CCch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998765433210 00 00 00000000 0000 0023456799999999999999999998544
Q ss_pred CCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCCh-----HHHHHHHHcCCHHHHHHHHHH
Q 000709 1048 GSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-----EAAFSAAILGDNALMEKAWQD 1110 (1339)
Q Consensus 1048 ~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-----~~af~~~~lgd~~~~~~~l~~ 1110 (1339)
. +... .=+..|..+|...|+.++..++.+.+....-.+ ..+..+.-+|+.+++++++.+
T Consensus 389 ~-P~n~---~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 389 A-PGNQ---GLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred C-CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 2111 013556777888899999999988888865332 112222367777777776653
No 409
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=90.02 E-value=2.1 Score=52.17 Aligned_cols=167 Identities=14% Similarity=-0.019 Sum_probs=97.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCc-----hhhHHH-HHHHHhCCcchhhcccc----cccCccE-------EEeecccccHHH
Q 000709 909 RCLAAYGDSVSAVKWASRLGR-----EHHDDL-AQFMLGMGYATEALHLP----GISKRLE-------FDLAMQSNDLKR 971 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i~~-----~~~~~~-a~fL~~~G~~e~Al~~~----~d~~~~~-------f~La~~~g~l~~ 971 (1339)
-.++..|||+.|.+.+..-++ ..++-+ |+.-..+|.++.|.+.. ...++.+ .+++++.|+.+.
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 445667999999998887433 223444 44447888877775432 2122322 678899999999
Q ss_pred HHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 000709 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVK 1051 (1339)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~ 1051 (1339)
|++.+..+.+. ..+.. .-.+-+++.++.+|+.+.|.+-|.+....+.+
T Consensus 172 Al~~l~~~~~~-~P~~~------------------------------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~- 219 (398)
T PRK10747 172 ARHGVDKLLEV-APRHP------------------------------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG- 219 (398)
T ss_pred HHHHHHHHHhc-CCCCH------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-
Confidence 99998765332 11111 45666799999999999999888888544421
Q ss_pred ccccccchh--------hhHHHhHhcCChhHHHHHHHHH--HHcCCChHHHHHH----HHcCCHHHHHHHHHHc
Q 000709 1052 GALQGHELR--------GLALRLANHGELTRLSGLVTNL--ISLGLGREAAFSA----AILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1052 ~~~~~~d~~--------~l~ll~~~~g~~~~l~~l~~~a--~~~~~~~~~af~~----~~lgd~~~~~~~l~~~ 1111 (1339)
...++. .|+-......+.+.+.++.+.. ....+. .+.+.. ...||.+++.++|.+.
T Consensus 220 ---~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~-~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 220 ---DEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV-ALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111222 1122222333445555553332 112222 222322 2778888887776543
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.99 E-value=11 Score=42.93 Aligned_cols=203 Identities=10% Similarity=0.041 Sum_probs=105.7
Q ss_pred EEcCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEEeccCccce-EEeccccceeEeecccc-----CCCccccccCC
Q 000709 18 QLHPTHPWLVTADAS-----DHVSVWNWEHR-QVIYELKAGGVDQR-RLVGAKLEKLAEGELEH-----KGKPTEAMRGG 85 (1339)
Q Consensus 18 afSPdg~~LaSgs~D-----GtIrIWDl~tg-~~l~~~~~~~~~~i-~~vs~d~~~Lasgs~d~-----~gk~~~~l~~g 85 (1339)
.|||||.||...-.| |.|-|||...+ +.+.++..++...- ..+.+||+.++.....- -++.-..+ .
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl--d 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL--D 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch--h
Confidence 699999999876443 88999998754 55667765544332 23448888887653110 01100000 0
Q ss_pred ceEEEEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc-----EEEE--EecCCceeecc
Q 000709 86 SVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-----AIFL--DLVTMRGRDIP 158 (1339)
Q Consensus 86 ~V~sVaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg-----~I~w--D~~t~~~~~v~ 158 (1339)
. ..-.+.+.|..+++.+.+..-....+ ...|+.++..+||. +++.|-.-| --.+ -......+.+.
T Consensus 198 s------MePSlvlld~atG~liekh~Lp~~l~-~lSiRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~ 269 (366)
T COG3490 198 S------MEPSLVLLDAATGNLIEKHTLPASLR-QLSIRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLD 269 (366)
T ss_pred h------cCccEEEEeccccchhhhccCchhhh-hcceeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccC
Confidence 0 24456667766666553221111111 34577788888886 444432111 1111 11111111110
Q ss_pred c----cccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEE
Q 000709 159 K----QELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSG 233 (1339)
Q Consensus 159 ~----~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSg 233 (1339)
. ...-..+|-+|+.+ -+..+++..+ ..+...+||..++..+..-. -.....+. ....-|+..
T Consensus 270 ~pee~~~~~anYigsiA~n-----~~~glV~lTSP~GN~~vi~da~tG~vv~~a~---l~daaGva-----~~~~gf~vs 336 (366)
T COG3490 270 LPEEQTAAFANYIGSIAAN-----RRDGLVALTSPRGNRAVIWDAATGAVVSEAA---LPDAAGVA-----AAKGGFAVS 336 (366)
T ss_pred CCHHHHHHHHhhhhheeec-----ccCCeEEEecCCCCeEEEEEcCCCcEEeccc---ccccccce-----eccCceEEe
Confidence 0 01114578888883 3344554444 55667899999998765432 11122221 233345555
Q ss_pred eCCCcEEEEe
Q 000709 234 GSDGLLILWS 243 (1339)
Q Consensus 234 S~DgtVrVWD 243 (1339)
+.+|.+.++.
T Consensus 337 sg~G~~~~~s 346 (366)
T COG3490 337 SGQGRIIFYS 346 (366)
T ss_pred cCCceEEecc
Confidence 7788888774
No 411
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=89.97 E-value=24 Score=42.83 Aligned_cols=169 Identities=15% Similarity=0.088 Sum_probs=106.6
Q ss_pred CEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEE
Q 000709 13 KIVKIQLHPTHPWLVTADA---SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQ 89 (1339)
Q Consensus 13 ~V~~vafSPdg~~LaSgs~---DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~s 89 (1339)
.-..++|+|++..+..+.. ++++.+.|..+++.+.+...+....-..+.+++..+....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~------------------ 178 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTN------------------ 178 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEe------------------
Confidence 4557899999986666544 6899999999999988866554344455557777555442
Q ss_pred EEEcCCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecC--cEE-EEEecCCceeeccccccCCCC
Q 000709 90 VNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVN--KAI-FLDLVTMRGRDIPKQELDNKS 166 (1339)
Q Consensus 90 VaF~Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~d--g~I-~wD~~t~~~~~v~~~~~h~~~ 166 (1339)
..++.+.+.|........ ......-.....-..+.+++++..+.+....+ +.+ ++|..++............ .
T Consensus 179 --~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~ 254 (381)
T COG3391 179 --SDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-A 254 (381)
T ss_pred --cCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-C
Confidence 146777787765553331 11010111123345678999998555555444 355 6688776543321122223 5
Q ss_pred eEEEEEeeccccCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe
Q 000709 167 LVCMEFLSRSAVGDVPLVAFGSS-DGVIRVLSMISWKLVRRYT 208 (1339)
Q Consensus 167 V~~vaf~P~s~Spdg~~LasGs~-DgtIrIWDl~t~~~i~~l~ 208 (1339)
...+.+ +|+|.++.+... .+.+.+-|..+......+.
T Consensus 255 ~~~v~~-----~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 255 PRGVAV-----DPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CCceeE-----CCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 566777 678998888754 4889999988877777654
No 412
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.94 E-value=3 Score=49.54 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=74.0
Q ss_pred cChhHHHhHHHHhcCCHHHHHHHHHhcCch-h--------hHHHHHHHH-------hCCcchhhccccccc---CccEEE
Q 000709 901 LSHPGIRCRCLAAYGDSVSAVKWASRLGRE-H--------HDDLAQFML-------GMGYATEALHLPGIS---KRLEFD 961 (1339)
Q Consensus 901 l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~-~--------~~~~a~fL~-------~~G~~e~Al~~~~d~---~~~~f~ 961 (1339)
+++..-+-..++-+||++.|++++.-+... . .-.+-+||+ .+-|.+.||.+-.-. ...+=.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn 498 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGN 498 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCc
Confidence 444555567788899999999988763221 1 112336774 457888888754321 123557
Q ss_pred eecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Q 000709 962 LAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREAL 1041 (1339)
Q Consensus 962 La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~ 1041 (1339)
++...|+++.|.+.-++--+ +...--+-...+|-.|.++|+++.|.+||
T Consensus 499 ~~f~ngd~dka~~~ykeal~-------------------------------ndasc~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 499 IAFANGDLDKAAEFYKEALN-------------------------------NDASCTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred eeeecCcHHHHHHHHHHHHc-------------------------------CchHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence 88899999999988653211 11111123334588899999999999999
Q ss_pred HHH
Q 000709 1042 KRL 1044 (1339)
Q Consensus 1042 ~~~ 1044 (1339)
.++
T Consensus 548 ~kl 550 (840)
T KOG2003|consen 548 LKL 550 (840)
T ss_pred HHH
Confidence 988
No 413
>PRK12370 invasion protein regulator; Provisional
Probab=89.90 E-value=3 Score=53.14 Aligned_cols=88 Identities=11% Similarity=-0.077 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHH-H----
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAA-F---- 1093 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~a-f---- 1093 (1339)
.-|..+|..+..+|+++.|+.+|+++-..+ ++.+. -+..|..+|...|+.++.....+.|....-.+..+ +
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~---a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLS-PISAD---IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 466667777777777777777777764332 22111 23445566667777776666666666544331111 1
Q ss_pred HHHHcCCHHHHHHHHHH
Q 000709 1094 SAAILGDNALMEKAWQD 1110 (1339)
Q Consensus 1094 ~~~~lgd~~~~~~~l~~ 1110 (1339)
..+..|+.+++++.+.+
T Consensus 415 ~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 415 ITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHhccCHHHHHHHHHH
Confidence 12356777766666544
No 414
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.87 E-value=7.7 Score=50.59 Aligned_cols=89 Identities=19% Similarity=0.022 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHH--HH
Q 000709 1018 AKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAF--SA 1095 (1339)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af--~~ 1095 (1339)
..-|..||.....+|+++.|..+|+++-... +.... -...|..+|...|+.+........+...+-.+..++ .+
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~---a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPY---VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 3567777777777777777777777774332 11110 123456666777777776666665554432211111 11
Q ss_pred ---HHcCCHHHHHHHHHH
Q 000709 1096 ---AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1096 ---~~lgd~~~~~~~l~~ 1110 (1339)
..+|+.+++++.|.+
T Consensus 360 ~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 360 AALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 267777777777664
No 415
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=6.5 Score=48.10 Aligned_cols=138 Identities=9% Similarity=0.035 Sum_probs=86.9
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCC--E-----EEEEeCCCcEEEEeCCCCCc-cceecc
Q 000709 184 VAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEA--L-----LVSGGSDGLLILWSADHGQD-SRELVP 255 (1339)
Q Consensus 184 LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~--~-----LaSgS~DgtVrVWDl~tg~~-~~~~~~ 255 (1339)
+.++.....++-.|++.|+.+.... -|.. |+-+. +.|+.+ . =+.|-.|..|.-||.+-... .-.+..
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk-~~~d-i~mv~---~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWK-FEDD-INMVD---ITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEee-ccCC-cceee---ccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 4455566678888999999998886 4444 55443 344332 1 23466788999999884322 111111
Q ss_pred cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCC
Q 000709 256 KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDS 335 (1339)
Q Consensus 256 ~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg 335 (1339)
...+.. .....|.+-. ..-+|+.||.+|.||+||- .+..-++ -+.+...+|..|..+.+|++|.|..+.
T Consensus 424 ~kqy~~-k~nFsc~aTT----~sG~IvvgS~~GdIRLYdr-i~~~AKT-----AlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 424 SKQYST-KNNFSCFATT----ESGYIVVGSLKGDIRLYDR-IGRRAKT-----ALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred cccccc-ccccceeeec----CCceEEEeecCCcEEeehh-hhhhhhh-----cccccCCceeeEEeeccCcEEEEeccc
Confidence 111111 1223344433 3569999999999999996 4443333 267888899999999999988776666
Q ss_pred eE
Q 000709 336 HI 337 (1339)
Q Consensus 336 ~L 337 (1339)
.|
T Consensus 493 yL 494 (644)
T KOG2395|consen 493 YL 494 (644)
T ss_pred EE
Confidence 53
No 416
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.70 E-value=3.6 Score=53.62 Aligned_cols=233 Identities=12% Similarity=-0.001 Sum_probs=127.4
Q ss_pred HHHHhcCCHHHHHHHHHh---cCch---hhHHHHHHHHhCCcchhhccccc-------ccCccEE--EeecccccHHHHH
Q 000709 909 RCLAAYGDSVSAVKWASR---LGRE---HHDDLAQFMLGMGYATEALHLPG-------ISKRLEF--DLAMQSNDLKRAL 973 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~---i~~~---~~~~~a~fL~~~G~~e~Al~~~~-------d~~~~~f--~La~~~g~l~~a~ 973 (1339)
..+...|++++|.+.+.+ +.+. .+..+++-+..+|-.++|+.... +++...+ -..++.|++++|.
T Consensus 118 ~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~ 197 (656)
T PRK15174 118 SVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDH 197 (656)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHH
Confidence 345667999999887766 2222 36677888899999998876332 1111111 1245678999998
Q ss_pred HHHHhccCCCccCCCCCCCCcccccccc-cccchhhhhhhhh-------hhhHHHHHHHHHHHHHcCCHHH----HHHHH
Q 000709 974 QCLITMSNSRDIGQDHPGLDLNDILTLT-TKKENIVEAVQGI-------VKFAKEFLDLIDAADATGQANI----AREAL 1041 (1339)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~w~~l~~~al~~g~~~~----a~~~~ 1041 (1339)
+.++.+-.....+.. .....+... ....+..++.... -.....|..||.....+|+++. |+.+|
T Consensus 198 ~~~~~~l~~~~~~~~----~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 198 DLARALLPFFALERQ----ESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHhcCCCcch----hHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 887654221111100 000000000 0111111111111 1123567778999999999985 78999
Q ss_pred HHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-----HHcCCHHHHHHHHHHc----C
Q 000709 1042 KRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-----AILGDNALMEKAWQDT----G 1112 (1339)
Q Consensus 1042 ~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-----~~lgd~~~~~~~l~~~----~ 1112 (1339)
+++-... ++.+ .-+..|..+|...|+.+......+.+....-.+..+... ..+|+++++++.|.+. .
T Consensus 274 ~~Al~l~-P~~~---~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 274 RHALQFN-SDNV---RIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHhhC-CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9885442 2111 123567778888999998888888888765442222111 2679999988877653 2
Q ss_pred CchHHHH-HHHHhC-CCChHHHHHHHHHHHhhhcCCCCc
Q 000709 1113 MLAEAVL-HAHAHG-RPSLKNLVEAWNKMLQKEVDHTPT 1149 (1339)
Q Consensus 1113 ~~~~A~~-~A~t~~-~~~~~~~~~~w~~~l~~~~~~~~~ 1149 (1339)
..+.+.. .|..|. .....+.++..++.|+..-+..|.
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~ 388 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQ 388 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchh
Confidence 2233222 222221 123455555555555544443333
No 417
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.45 E-value=16 Score=46.77 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred eEEEEEecCc------EE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC------CcEEEEECCC
Q 000709 134 HFLVICCVNK------AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD------GVIRVLSMIS 200 (1339)
Q Consensus 134 ~lLasgs~dg------~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D------gtIrIWDl~t 200 (1339)
.+++.|+.++ .+ .+|..+.......... ....-.+++++ ++...++|+.| .++..||..+
T Consensus 286 ~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~------~~~lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 286 KLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL------NGKLYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred eEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE------CCEEEEEccccCCCcccceEEEecCCC
Confidence 3677777663 23 3377666544433333 22233445553 57788889888 3577888876
Q ss_pred CeEEE--EEe-cCCCCCeeEEEEeeeCCCCCEEEEEeCCCc-----EEEEeCCCCCccceecccccccccccceEEEEee
Q 000709 201 WKLVR--RYT-GGHKGSISCLMTFMASSGEALLVSGGSDGL-----LILWSADHGQDSRELVPKLSLKAHDGGVVAVELS 272 (1339)
Q Consensus 201 ~~~i~--~l~-~gH~~~V~sl~wf~~spdg~~LaSgS~Dgt-----VrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafs 272 (1339)
.+... .+. ..+...+..+ +|.+.+.|+.||. |-.||..+.+.. ....+......+-.+.+
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg~~~l~svE~YDp~~~~W~----~va~m~~~r~~~gv~~~- 426 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDGEKSLNSVECYDPVTNKWT----PVAPMLTRRSGHGVAVL- 426 (571)
T ss_pred CceeccCCccCccccceeEEE-------CCEEEEEeccccccccccEEEecCCCCccc----ccCCCCcceeeeEEEEE-
Confidence 65433 222 1122233322 7889999999965 677888766532 11112211122222222
Q ss_pred ccCCCCCEEEEEeCCC------cEEEEECCCCe
Q 000709 273 RVMGGSPQLITIGADK------TLAIWDTVSFK 299 (1339)
Q Consensus 273 p~~~dg~~LaSgs~Dg------~IrIWDl~t~~ 299 (1339)
++.+.+.||.|+ ++..||..+.+
T Consensus 427 ----~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 427 ----GGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred ----CCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 567888888654 56778887655
No 418
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.35 E-value=11 Score=47.97 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 000709 1025 IDAADATGQANIAREALKRLAA 1046 (1339)
Q Consensus 1025 ~~~al~~g~~~~a~~~~~~~~~ 1046 (1339)
|..-.-.++++-|-+||+-.++
T Consensus 372 ~rledir~emDd~~~~f~lL~n 393 (1102)
T KOG1924|consen 372 GRLEDIRAEMDDANEVFELLAN 393 (1102)
T ss_pred hHHHhhhhhhccHHHHHHHHHH
Confidence 4444558888999999987754
No 419
>PHA02713 hypothetical protein; Provisional
Probab=89.14 E-value=6.8 Score=50.04 Aligned_cols=91 Identities=8% Similarity=-0.005 Sum_probs=51.4
Q ss_pred EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC------CcEEEEECCC---CeEEEEEecCCCCCee
Q 000709 146 FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD------GVIRVLSMIS---WKLVRRYTGGHKGSIS 216 (1339)
Q Consensus 146 ~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D------gtIrIWDl~t---~~~i~~l~~gH~~~V~ 216 (1339)
++|..+.+...+............+.+ ++.+.+.|+.+ ..+..||..+ |..+..+. ..... .
T Consensus 436 ~YDP~td~W~~v~~m~~~r~~~~~~~~-------~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~-~ 506 (557)
T PHA02713 436 RYDTVNNIWETLPNFWTGTIRPGVVSH-------KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSA-L 506 (557)
T ss_pred EECCCCCeEeecCCCCcccccCcEEEE-------CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-ccccc-c
Confidence 557776655444332222222223333 57777777654 2467899886 44444443 22222 2
Q ss_pred EEEEeeeCCCCCEEEEEeCCC--cEEEEeCCCCCc
Q 000709 217 CLMTFMASSGEALLVSGGSDG--LLILWSADHGQD 249 (1339)
Q Consensus 217 sl~wf~~spdg~~LaSgS~Dg--tVrVWDl~tg~~ 249 (1339)
++. .-++.+.+.|+.|+ ++-.||..+.+.
T Consensus 507 ~~~----~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 507 HTI----LHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred eeE----EECCEEEEEeeecceeehhhcCcccccc
Confidence 222 22788999999998 777888877653
No 420
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.85 E-value=19 Score=41.10 Aligned_cols=132 Identities=15% Similarity=0.079 Sum_probs=75.7
Q ss_pred eCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC-cEEEEECCCCeEEEE
Q 000709 128 PSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG-VIRVLSMISWKLVRR 206 (1339)
Q Consensus 128 fspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg-tIrIWDl~t~~~i~~ 206 (1339)
...||+.-+++.+.+|.++.-..- ...-..|+|||. ...-++.+-.-| ...++|..+.+....
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~~~~l------------paR~Hgi~~~p~----~~ravafARrPGtf~~vfD~~~~~~pv~ 106 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVFATAL------------PARGHGIAFHPA----LPRAVAFARRPGTFAMVFDPNGAQEPVT 106 (366)
T ss_pred eccCCceeEEEEccCCceeeeeec------------ccccCCeecCCC----CcceEEEEecCCceEEEECCCCCcCcEE
Confidence 345777666677777766441111 111123566442 123344444434 356788887766555
Q ss_pred EecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEE
Q 000709 207 YTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQL 281 (1339)
Q Consensus 207 l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-----gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~L 281 (1339)
+........+.= - .||+||.+|...-.| |.|-|||.+.+- ...-++..|.-+...+.|.+ |++.+
T Consensus 107 ~~s~~~RHfyGH-G-vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-----qrvgE~~t~GiGpHev~lm~---DGrtl 176 (366)
T COG3490 107 LVSQEGRHFYGH-G-VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-----QRVGEFSTHGIGPHEVTLMA---DGRTL 176 (366)
T ss_pred EecccCceeecc-c-ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----ceecccccCCcCcceeEEec---CCcEE
Confidence 531111111100 0 289999999876544 779999998542 12334677877888899998 78887
Q ss_pred EEEe
Q 000709 282 ITIG 285 (1339)
Q Consensus 282 aSgs 285 (1339)
+.+.
T Consensus 177 vvan 180 (366)
T COG3490 177 VVAN 180 (366)
T ss_pred EEeC
Confidence 7654
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=88.72 E-value=5.8 Score=50.60 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=71.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCC-----CCccceec
Q 000709 180 DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADH-----GQDSRELV 254 (1339)
Q Consensus 180 dg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~t-----g~~~~~~~ 254 (1339)
-++..++-++...+.|||.+.+.....-.-...+.|..+.|. ..++++.+++.+..+.|.++.-.. ........
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWt-st~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWT-STPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceee-ecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 355555555666899999998764433321457899999996 889999999999999999986421 11111111
Q ss_pred ccccccccc-cceEEEEeeccCCCCCEEEEEeCCCcEEEEEC
Q 000709 255 PKLSLKAHD-GGVVAVELSRVMGGSPQLITIGADKTLAIWDT 295 (1339)
Q Consensus 255 ~~~~l~gH~-~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl 295 (1339)
....+..|+ .+|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~---~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLK---DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EEEEeecCCCCCccceeEec---CCeEEEEe--CCEEEEECC
Confidence 122234444 5688999998 66555443 467777763
No 422
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.47 E-value=83 Score=40.03 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=39.2
Q ss_pred cEEEEECCCCeEEEEEecCCCCCeeEEE------EeeeCCCCC---EEEEEeCCCcEEEEeCCCCCcc
Q 000709 192 VIRVLSMISWKLVRRYTGGHKGSISCLM------TFMASSGEA---LLVSGGSDGLLILWSADHGQDS 250 (1339)
Q Consensus 192 tIrIWDl~t~~~i~~l~~gH~~~V~sl~------wf~~spdg~---~LaSgS~DgtVrVWDl~tg~~~ 250 (1339)
+|.-.|+++++..-.+.. ..+.++... .+....+|+ .++.+..+|.+.+.|-.+|+.+
T Consensus 272 s~vAld~~TG~~~W~~Q~-~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQT-TPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eEEEEccccCCEEEeeeC-CCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 677789999988777652 222222111 112334665 7889999999999999999875
No 423
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=88.08 E-value=53 Score=37.39 Aligned_cols=152 Identities=11% Similarity=0.062 Sum_probs=85.0
Q ss_pred CCCeEEEEEecCcEEEEEec-CCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEE--
Q 000709 131 KGRHFLVICCVNKAIFLDLV-TMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY-- 207 (1339)
Q Consensus 131 dg~~lLasgs~dg~I~wD~~-t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l-- 207 (1339)
.++ .|+.|+++|...++.. ..... ...+...|..+... ++-+.+++-+ |+.++++++.........
T Consensus 6 ~~~-~L~vGt~~Gl~~~~~~~~~~~~----~i~~~~~I~ql~vl-----~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~ 74 (275)
T PF00780_consen 6 WGD-RLLVGTEDGLYVYDLSDPSKPT----RILKLSSITQLSVL-----PELNLLLVLS-DGQLYVYDLDSLEPVSTSAP 74 (275)
T ss_pred CCC-EEEEEECCCEEEEEecCCccce----eEeecceEEEEEEe-----cccCEEEEEc-CCccEEEEchhhcccccccc
Confidence 354 7888899997777772 22111 12233349999884 4555666554 599999998754333210
Q ss_pred -----------ecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccc-eecccccccccccceEEEEeeccC
Q 000709 208 -----------TGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSR-ELVPKLSLKAHDGGVVAVELSRVM 275 (1339)
Q Consensus 208 -----------~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~-~~~~~~~l~gH~~~V~svafsp~~ 275 (1339)
.-.....+...+ ......+...+.....++|.+|......... . ...++. -...+.+++|..
T Consensus 75 ~~~~~~~~~~~~~~~~~~v~~f~-~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~--~~ke~~-lp~~~~~i~~~~-- 148 (275)
T PF00780_consen 75 LAFPKSRSLPTKLPETKGVSFFA-VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSK--LLKEIS-LPDPPSSIAFLG-- 148 (275)
T ss_pred ccccccccccccccccCCeeEEe-eccccccceEEEEEECCEEEEEEEECCcccccc--eeEEEE-cCCCcEEEEEeC--
Confidence 001222233221 0022344445555666699998887642111 1 111121 236688999985
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 000709 276 GGSPQLITIGADKTLAIWDTVSFKELRR 303 (1339)
Q Consensus 276 ~dg~~LaSgs~Dg~IrIWDl~t~~~l~~ 303 (1339)
+.|+.|..+ ...+.|+.++.....
T Consensus 149 ---~~i~v~~~~-~f~~idl~~~~~~~l 172 (275)
T PF00780_consen 149 ---NKICVGTSK-GFYLIDLNTGSPSEL 172 (275)
T ss_pred ---CEEEEEeCC-ceEEEecCCCCceEE
Confidence 577777644 467889997765444
No 424
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.68 E-value=15 Score=44.63 Aligned_cols=212 Identities=12% Similarity=0.096 Sum_probs=91.5
Q ss_pred CCCEEEEEE-CCCcEEEEECCC----CeEEEEEec--CCC-CCeeEEEEeeeCCCCCEEEEEeCC------CcEEEEeCC
Q 000709 180 DVPLVAFGS-SDGVIRVLSMIS----WKLVRRYTG--GHK-GSISCLMTFMASSGEALLVSGGSD------GLLILWSAD 245 (1339)
Q Consensus 180 dg~~LasGs-~DgtIrIWDl~t----~~~i~~l~~--gH~-~~V~sl~wf~~spdg~~LaSgS~D------gtVrVWDl~ 245 (1339)
+.++|+..+ ..+.|+|+|..+ .+..+.+.. -+. ..+..-..+..-|+|++++|+-.| |.+.+.|-.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 778999999973 456666641 011 122222222234688888885332 456677766
Q ss_pred CCCccceecccccccccccceEEEEeeccCCCCCEEEEEeC--------------------CCcEEEEECCCCeeEEEec
Q 000709 246 HGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGA--------------------DKTLAIWDTVSFKELRRIK 305 (1339)
Q Consensus 246 tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~--------------------Dg~IrIWDl~t~~~l~~~~ 305 (1339)
+-.....|... .+...--..+-|+| ..+.++|... ..++.+||+.+.+.++++.
T Consensus 166 tf~v~g~We~~---~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 166 TFEVKGRWEKD---RGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp T--EEEE--SB----TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred cccccceeccC---CCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 55444333110 11122345677788 5677777642 3589999999999999874
Q ss_pred CCCcccccCCceeEEEeCCC--CC--EEEEecCCeEEEccCCcc-cccccCccccC-----CCCCCeEEccCC--cccEE
Q 000709 306 PVPKLACHSVASWCHPRAPN--LD--ILTCVKDSHIWAIEHPTY-SALTRPLCELS-----SLVPPQVLAHHK--KLRVY 373 (1339)
Q Consensus 306 ~~~~l~~H~~~V~svafspd--g~--iLs~s~Dg~LWDi~t~~~-~~~~~~l~~~~-----~~~~~~tl~~~~--~~~I~ 373 (1339)
.. ........+.|..+ .. ++.+.-.+.||.+....- .-..+...++. +......+..-. -.-|+
T Consensus 240 Lg----~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 240 LG----EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp S-----TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred cC----CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 32 11122335555544 33 454555555665543110 00000011000 000000000000 12578
Q ss_pred EEEEecCCCcEEEEEECCCeEEEEecCCC
Q 000709 374 CMVAHSLQPHLVATGTNVGVIISEFDPRS 402 (1339)
Q Consensus 374 ~la~sp~~~~lLatGs~DG~IlriWd~~~ 402 (1339)
.|..|.++.+|.++.-.+|.| |.||+..
T Consensus 316 DI~iSlDDrfLYvs~W~~Gdv-rqYDISD 343 (461)
T PF05694_consen 316 DILISLDDRFLYVSNWLHGDV-RQYDISD 343 (461)
T ss_dssp -EEE-TTS-EEEEEETTTTEE-EEEE-SS
T ss_pred eEEEccCCCEEEEEcccCCcE-EEEecCC
Confidence 999999888888888889997 8999874
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.38 E-value=8.8 Score=49.49 Aligned_cols=114 Identities=15% Similarity=0.109 Sum_probs=74.1
Q ss_pred CCceEEEEEcCCeEEEEEcCCcc-----------c---cccccccccccCCCCeeeeeeC--CCCCeEEEEEecCcEE-E
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNR-----------A---AAAEAPTAVSNVTSGFASPPPS--TKGRHFLVICCVNKAI-F 146 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrlWDl~~~~-----------~---l~~~~~~~~~~~~~~V~slafs--pdg~~lLasgs~dg~I-~ 146 (1339)
+..|..++.+||.|.+|.+.+-- . .....+.........+++++++ ...+ ++|+++....| +
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EEEEecCCceEEE
Confidence 46788889999999999763210 0 0011122334446689999998 6565 88888888877 4
Q ss_pred E--EecCCceeeccccccCCCCeEEEEEeeccccCCCC-EEEEEECCCcEEEEECC
Q 000709 147 L--DLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMI 199 (1339)
Q Consensus 147 w--D~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~-~LasGs~DgtIrIWDl~ 199 (1339)
+ .....+..... ...+..-|-||.|.+....++|. ++++++-.|.+.+|++.
T Consensus 192 Faf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 4 33222221111 22467789999998864444554 78888999999998874
No 426
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.36 E-value=3 Score=53.90 Aligned_cols=74 Identities=26% Similarity=0.469 Sum_probs=46.7
Q ss_pred eCcEEEEEcCCCcEEEEecChhHHHhHHHHhcCCHHHHHHHHHhcCchhhHHHHHHHH-h---CCcchhhcccccccCcc
Q 000709 883 KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVKWASRLGREHHDDLAQFML-G---MGYATEALHLPGISKRL 958 (1339)
Q Consensus 883 ~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~~~~~a~fL~-~---~G~~e~Al~~~~d~~~~ 958 (1339)
.|..+||-|=++ -|.|++.+++ .+|.++|+++-.+. + .+-+-+. + .||.|.+|.|. |.-
T Consensus 714 HD~ifW~GDFNY---RI~l~nEEVr--~~v~~~d~~kL~e~----D-----QL~~q~~~G~vF~gF~E~~ltF~---PTY 776 (1080)
T KOG0566|consen 714 HDYIFWLGDFNY---RIDLSNEEVR--RLVRNQDLDKLLEY----D-----QLTQQMNAGQVFPGFHEGQLTFP---PTY 776 (1080)
T ss_pred CceEEEecccce---eecCCHHHHH--HHHHhccHHHHhhH----H-----HHHHHHhcCcccccccccccccC---Ccc
Confidence 677788877553 3455555554 57889998876442 1 1222221 1 48999999987 899
Q ss_pred EEEeecccccHHHHHHH
Q 000709 959 EFDLAMQSNDLKRALQC 975 (1339)
Q Consensus 959 ~f~La~~~g~l~~a~~~ 975 (1339)
|||+- .+++|...++
T Consensus 777 KyD~g--Td~YDTSeK~ 791 (1080)
T KOG0566|consen 777 KYDPG--TDDYDTSEKC 791 (1080)
T ss_pred cccCC--CCccccchhc
Confidence 99974 4555554443
No 427
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=87.02 E-value=2.8 Score=43.29 Aligned_cols=26 Identities=27% Similarity=0.075 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
..|..+||.++++|+.+.|+.+|+++
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 46777899999999999999999986
No 428
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=86.85 E-value=1.5 Score=36.50 Aligned_cols=33 Identities=6% Similarity=0.082 Sum_probs=28.8
Q ss_pred ccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCe
Q 000709 263 DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 263 ~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~ 299 (1339)
...|.+++|+| ..++|+.++.||.|.+|++ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 34599999999 7899999999999999998 444
No 429
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=18 Score=39.68 Aligned_cols=152 Identities=15% Similarity=0.044 Sum_probs=88.5
Q ss_pred CCCEEEEEeC--CCeEEEEECCCCcEEEEEeccCccceEEeccccceeEeeccccCCCccccccCCceEEEEEcCCeEEE
Q 000709 22 THPWLVTADA--SDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMRGGSVKQVNFYDDDVRF 99 (1339)
Q Consensus 22 dg~~LaSgs~--DGtIrIWDl~tg~~l~~~~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~~g~V~sVaF~Dg~Irl 99 (1339)
+|.++.+.+. ...|++||+.+|+.+.+-.... + +.+..|. ...+..++.+.|.+|.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~---------~~FgEGi---------t~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-D---------TVFGEGI---------TKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC-c---------cccccce---------eeccceEEEEEeccceeEE
Confidence 4566666654 3579999999999887765321 1 1222221 1124688999999999999
Q ss_pred EEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCcEEEE-EecCCceeeccccccCC---CCeEEEEEeec
Q 000709 100 WQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQELDN---KSLVCMEFLSR 175 (1339)
Q Consensus 100 WDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg~I~w-D~~t~~~~~v~~~~~h~---~~V~~vaf~P~ 175 (1339)
+|..+.+++. .... .+.=+.+ ..|++. |+.+....+++| |..+............. ..++.+.|
T Consensus 116 ~d~~t~~~lg----~~~y--~GeGWgL--t~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~--- 183 (262)
T COG3823 116 YDADTLEELG----RFSY--EGEGWGL--TSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW--- 183 (262)
T ss_pred EChHHhhhhc----cccc--CCcceee--ecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee---
Confidence 9998887763 1111 1111222 234553 444445556666 77654322111111222 23455666
Q ss_pred cccCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 000709 176 SAVGDVPLVAFGSSDGVIRVLSMISWKLVRRY 207 (1339)
Q Consensus 176 s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l 207 (1339)
-+|...+-.-.+..|...|..+|+.+..+
T Consensus 184 ---VdG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 184 ---VDGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred ---eccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 36777777777777778888888777665
No 430
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.64 E-value=20 Score=40.97 Aligned_cols=121 Identities=16% Similarity=0.146 Sum_probs=72.6
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
......+.| ..++.++-+.+.-| .|+.+|+.+++......-...-.--.+.. . ++++..-.-.++...+
T Consensus 44 ~aFTQGL~~-----~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~---~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 44 TAFTQGLEF-----LDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI---L-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp T-EEEEEEE-----EETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE---E-TTEEEEEESSSSEEEE
T ss_pred cccCccEEe-----cCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE---E-CCEEEEEEecCCeEEE
Confidence 345566777 34677777777666 79999999998776654233333333331 1 3445555567899999
Q ss_pred EeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEec
Q 000709 242 WSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1339)
Q Consensus 242 WDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~ 305 (1339)
||..+-+.+.++ .+.+ .=+.++. ++..|+.......|+++|..+.+..+++.
T Consensus 115 yd~~tl~~~~~~----~y~~---EGWGLt~-----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 115 YDPNTLKKIGTF----PYPG---EGWGLTS-----DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EETTTTEEEEEE----E-SS---S--EEEE-----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EccccceEEEEE----ecCC---cceEEEc-----CCCEEEEECCccceEEECCcccceEEEEE
Confidence 999887665542 2332 3345552 45566666667889999998887777653
No 431
>PRK12370 invasion protein regulator; Provisional
Probab=86.40 E-value=2 Score=54.72 Aligned_cols=89 Identities=12% Similarity=-0.061 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHH--H-HH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAA--F-SA 1095 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~a--f-~~ 1095 (1339)
.-|..+|..+..+|+++.|.++|+++-... + -.... +..++..+...|+.++....+..+......++.. + .+
T Consensus 373 ~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P--~~~~~-~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 373 DIKYYYGWNLFMAGQLEEALQTINECLKLD-P--TRAAA-GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C--CChhh-HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 578889999999999999999999995443 2 11000 1123334556888888887777776553111111 1 12
Q ss_pred ---HHcCCHHHHHHHHHHc
Q 000709 1096 ---AILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1096 ---~~lgd~~~~~~~l~~~ 1111 (1339)
..+|+.+++++.+.+.
T Consensus 449 ~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHhCCCHHHHHHHHHHh
Confidence 2689999999988764
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.28 E-value=6 Score=49.10 Aligned_cols=70 Identities=7% Similarity=-0.013 Sum_probs=43.8
Q ss_pred eeeeCCCCCeEEEEEecCcEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEE-CCCcEEEEECCC
Q 000709 125 SPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGS-SDGVIRVLSMIS 200 (1339)
Q Consensus 125 slafspdg~~lLasgs~dg~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs-~DgtIrIWDl~t 200 (1339)
.+.|+|....+.+-...|-.|..++..... .++......+.|.|.+| ..||+.|+++- +.=.-++||-..
T Consensus 117 GCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi~~~G~IhCACW-----T~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 117 GCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADIKTSGLIHCACW-----TKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred cccccCCCceEEEEecCceeEeeeeeeCCc-eEEEeccCCceEEEEEe-----cCcCCEEEEEeCCeEEEEEecCch
Confidence 567999998444445555556556554332 23233455789999999 78998877653 333457888543
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=86.21 E-value=71 Score=37.56 Aligned_cols=152 Identities=13% Similarity=0.049 Sum_probs=80.3
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCC--CeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEE
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMIS--WKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t--~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrV 241 (1339)
...+..+.. ++||.++++++......-||.-. ++...+ .....|..|. |.+++.+.+.+ ..|.|++
T Consensus 144 ~gs~~~~~r-----~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r---~~~~riq~~g---f~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 144 SGSINDITR-----SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR---NSSRRIQSMG---FSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp ---EEEEEE------TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEE---E-TTS-EEEEE-TTTEEEE
T ss_pred cceeEeEEE-----CCCCcEEEEECcccEEEEecCCCccceEEcc---Cccceehhce---ecCCCCEEEEe-CCcEEEE
Confidence 466778777 78999998886666667888653 344333 3567888886 78888776654 8888888
Q ss_pred EeCCCCCccceecc-cccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEE
Q 000709 242 WSADHGQDSRELVP-KLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 242 WDl~tg~~~~~~~~-~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
=+.... ..+|.. ...+....-.+..++|.+ +....++|+ .|.+ +.....|+..+.... ...-..+++.+
T Consensus 212 s~~~~~--~~~w~~~~~~~~~~~~~~ld~a~~~---~~~~wa~gg-~G~l-~~S~DgGktW~~~~~---~~~~~~n~~~i 281 (302)
T PF14870_consen 212 SDDPDD--GETWSEPIIPIKTNGYGILDLAYRP---PNEIWAVGG-SGTL-LVSTDGGKTWQKDRV---GENVPSNLYRI 281 (302)
T ss_dssp EE-TTE--EEEE---B-TTSS--S-EEEEEESS---SS-EEEEES-TT-E-EEESSTTSS-EE-GG---GTTSSS---EE
T ss_pred ccCCCC--ccccccccCCcccCceeeEEEEecC---CCCEEEEeC-CccE-EEeCCCCccceECcc---ccCCCCceEEE
Confidence 772211 111111 111222344589999998 566666555 4443 346666776665321 22334567888
Q ss_pred EeCCCCCEEEEecCCeE
Q 000709 321 PRAPNLDILTCVKDSHI 337 (1339)
Q Consensus 321 afspdg~iLs~s~Dg~L 337 (1339)
.|.++.+-++.+.+|.|
T Consensus 282 ~f~~~~~gf~lG~~G~l 298 (302)
T PF14870_consen 282 VFVNPDKGFVLGQDGVL 298 (302)
T ss_dssp EEEETTEEEEE-STTEE
T ss_pred EEcCCCceEEECCCcEE
Confidence 88877677777888864
No 434
>PRK13616 lipoprotein LpqB; Provisional
Probab=85.97 E-value=23 Score=45.51 Aligned_cols=151 Identities=13% Similarity=0.026 Sum_probs=85.1
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEE------CCC--cEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeC
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGS------SDG--VIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGS 235 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs------~Dg--tIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~ 235 (1339)
...+...++ |++|+.++..- .|. .|.+++.. +.. ..+..+. ..+.-. ++++|..|.+.+.
T Consensus 349 ~~~vsspai-----SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~--~~t~Ps---WspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAAL-----SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGH--SLTRPS---WSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceE-----CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCC--CCCCce---ECCCCCceEEEec
Confidence 346778888 78999887765 243 45555643 222 3333233 245554 5888877776653
Q ss_pred C------------CcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEE---EECCCCee
Q 000709 236 D------------GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAI---WDTVSFKE 300 (1339)
Q Consensus 236 D------------gtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrI---WDl~t~~~ 300 (1339)
. +.+.+.++..+... ....+.|..+.|+| ||..|+... +++|.+ -....|.
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~---------~~~~g~Issl~wSp---DG~RiA~i~-~g~v~Va~Vvr~~~G~- 482 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVA---------SRVPGPISELQLSR---DGVRAAMII-GGKVYLAVVEQTEDGQ- 482 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhh---------hccCCCcCeEEECC---CCCEEEEEE-CCEEEEEEEEeCCCCc-
Confidence 3 22222233322210 02345799999999 788777665 477777 4444454
Q ss_pred EEEecCCCccc-ccCCceeEEEeCCCCCEEEEecCC--eEEEcc
Q 000709 301 LRRIKPVPKLA-CHSVASWCHPRAPNLDILTCVKDS--HIWAIE 341 (1339)
Q Consensus 301 l~~~~~~~~l~-~H~~~V~svafspdg~iLs~s~Dg--~LWDi~ 341 (1339)
..+.....+. +-...+.++.|..++.++.+..++ .+|.+.
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 2221111122 223335789999999977554443 378765
No 435
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=85.72 E-value=5.3 Score=48.90 Aligned_cols=168 Identities=14% Similarity=0.017 Sum_probs=100.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCch------hhHHHHHHHHhCCcchhhcccccc----cCcc-------EEEeecccccHHH
Q 000709 909 RCLAAYGDSVSAVKWASRLGRE------HHDDLAQFMLGMGYATEALHLPGI----SKRL-------EFDLAMQSNDLKR 971 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i~~~------~~~~~a~fL~~~G~~e~Al~~~~d----~~~~-------~f~La~~~g~l~~ 971 (1339)
..++..||++.|.+.+.+..+. .+--.|+....+|-.+.|.++... .++. .-.+.++.|+.+.
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3456779999999988773221 134557888888988887654322 1232 2556677899999
Q ss_pred HHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Q 000709 972 ALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVK 1051 (1339)
Q Consensus 972 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~ 1051 (1339)
|++.+..+... ..+. ..-+.-++..++.+|+.+.|.+.+++....+
T Consensus 172 Al~~l~~l~~~-~P~~------------------------------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~--- 217 (409)
T TIGR00540 172 ARHGVDKLLEM-APRH------------------------------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAG--- 217 (409)
T ss_pred HHHHHHHHHHh-CCCC------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC---
Confidence 99998765432 1111 1467788999999999999999999986443
Q ss_pred ccccccchhhhHHHh----Hh----cCChhHHHHHHHHHHHc--CCChHHHHH-H--H-HcCCHHHHHHHHHHcC
Q 000709 1052 GALQGHELRGLALRL----AN----HGELTRLSGLVTNLISL--GLGREAAFS-A--A-ILGDNALMEKAWQDTG 1112 (1339)
Q Consensus 1052 ~~~~~~d~~~l~ll~----~~----~g~~~~l~~l~~~a~~~--~~~~~~af~-~--~-~lgd~~~~~~~l~~~~ 1112 (1339)
++...++..+-..+ .. ....+.|.++.+..-.. .+. ...+. + + ..|+.+++++++.+.=
T Consensus 218 -~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~-~l~~~~a~~l~~~g~~~~A~~~l~~~l 290 (409)
T TIGR00540 218 -LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNI-ALKIALAEHLIDCDDHDSAQEIIFDGL 290 (409)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCH-HHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 22222332222211 11 22234555443322211 222 21121 1 2 8899999998887653
No 436
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=85.67 E-value=95 Score=37.82 Aligned_cols=207 Identities=16% Similarity=0.084 Sum_probs=99.8
Q ss_pred CCeEEEEEcCCccccccccccccccCCCCeeeeeeCCCCCeEEEEEecCc-----------EEEEEecCCceeecccccc
Q 000709 94 DDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK-----------AIFLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 94 Dg~IrlWDl~~~~~l~~~~~~~~~~~~~~V~slafspdg~~lLasgs~dg-----------~I~wD~~t~~~~~v~~~~~ 162 (1339)
...++++|+.+++.+..... . .....+.|.++++.++.+..++. +.++.+.+........+..
T Consensus 149 ~~~l~v~Dl~tg~~l~d~i~---~---~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 149 WYTLRVFDLETGKFLPDGIE---N---PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEEEETTTTEEEEEEEE---E---EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred eEEEEEEECCCCcCcCCccc---c---cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 35799999999866521111 1 11123899999986767664442 1244555543332223333
Q ss_pred CCC-C-eEEEEEeeccccCCCCEEEEEECC----CcEEEEECCCC----eEEEEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000709 163 DNK-S-LVCMEFLSRSAVGDVPLVAFGSSD----GVIRVLSMISW----KLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1339)
Q Consensus 163 h~~-~-V~~vaf~P~s~Spdg~~LasGs~D----gtIrIWDl~t~----~~i~~l~~gH~~~V~sl~wf~~spdg~~LaS 232 (1339)
... . ...+.. ++|+++|+..+.. ..+.+.|+..+ .....+.....+....+. +.++.+++.
T Consensus 223 ~~~~~~~~~~~~-----s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~----~~~~~~yi~ 293 (414)
T PF02897_consen 223 PDEPFWFVSVSR-----SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD----HHGDRLYIL 293 (414)
T ss_dssp TTCTTSEEEEEE------TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE----EETTEEEEE
T ss_pred cCCCcEEEEEEe-----cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE----ccCCEEEEe
Confidence 332 2 556666 7899997765432 34788888764 223333312333333332 224444443
Q ss_pred Ee---CCCcEEEEeCCCCCccceecccccccccccc--eEEEEeeccCCCCCEEEEEeCCC--cEEEEECCCCeeEEEec
Q 000709 233 GG---SDGLLILWSADHGQDSRELVPKLSLKAHDGG--VVAVELSRVMGGSPQLITIGADK--TLAIWDTVSFKELRRIK 305 (1339)
Q Consensus 233 gS---~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~--V~svafsp~~~dg~~LaSgs~Dg--~IrIWDl~t~~~l~~~~ 305 (1339)
.. ..+.|...++........ ...+..|... +..+... ++.+++..-.++ .|++|++..+.....+.
T Consensus 294 Tn~~a~~~~l~~~~l~~~~~~~~---~~~l~~~~~~~~l~~~~~~----~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 294 TNDDAPNGRLVAVDLADPSPAEW---WTVLIPEDEDVSLEDVSLF----KDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp E-TT-TT-EEEEEETTSTSGGGE---EEEEE--SSSEEEEEEEEE----TTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred eCCCCCCcEEEEecccccccccc---eeEEcCCCCceeEEEEEEE----CCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 32 235666677776553111 1124445553 4444443 234555555554 57889998333333321
Q ss_pred CCCcccccCCceeEEEeCCCCC
Q 000709 306 PVPKLACHSVASWCHPRAPNLD 327 (1339)
Q Consensus 306 ~~~~l~~H~~~V~svafspdg~ 327 (1339)
+.. .+.|..+...+++.
T Consensus 367 ----~p~-~g~v~~~~~~~~~~ 383 (414)
T PF02897_consen 367 ----LPE-AGSVSGVSGDFDSD 383 (414)
T ss_dssp ----SSS-SSEEEEEES-TT-S
T ss_pred ----CCc-ceEEeccCCCCCCC
Confidence 111 23345555555555
No 437
>PRK13616 lipoprotein LpqB; Provisional
Probab=85.38 E-value=59 Score=41.91 Aligned_cols=72 Identities=18% Similarity=0.165 Sum_probs=42.9
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEE---EECCCCe-EE---EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRV---LSMISWK-LV---RRYTGGHKGSISCLMTFMASSGEALLVSGGSD 236 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrI---WDl~t~~-~i---~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D 236 (1339)
...|..+.| ||||..++... ++.|.+ -....+. .+ ..+..+-...+.++.|. .++. |+.+..+
T Consensus 447 ~g~Issl~w-----SpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~---~~~~-L~V~~~~ 516 (591)
T PRK13616 447 PGPISELQL-----SRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR---TGDS-LVVGRSD 516 (591)
T ss_pred CCCcCeEEE-----CCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe---cCCE-EEEEecC
Confidence 457999999 89999988876 477776 4434443 11 11221233345778774 4444 4455555
Q ss_pred CcEEEEeCC
Q 000709 237 GLLILWSAD 245 (1339)
Q Consensus 237 gtVrVWDl~ 245 (1339)
+...+|.+.
T Consensus 517 ~~~~v~~v~ 525 (591)
T PRK13616 517 PEHPVWYVN 525 (591)
T ss_pred CCCceEEEe
Confidence 555566554
No 438
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.92 E-value=8.5 Score=46.84 Aligned_cols=98 Identities=13% Similarity=0.091 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------cccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSV------KGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAA 1092 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~------~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~a 1092 (1339)
+.+.-.|+...-|++|+-|.+-|.++...... +.+.+.| +-++++-=++|+....+|...|.+..--...|
T Consensus 463 Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~---Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A 539 (606)
T KOG0547|consen 463 EVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVH---KALLVLQWKEDINQAENLLRKAIELDPKCEQA 539 (606)
T ss_pred hHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhh---hhHhhhchhhhHHHHHHHHHHHHccCchHHHH
Confidence 45555699999999999999999999554321 2223222 22333335699999999999999877665777
Q ss_pred HHHH-----HcCCHHHHHHHHHHcCCchHHHHHHHHhC
Q 000709 1093 FSAA-----ILGDNALMEKAWQDTGMLAEAVLHAHAHG 1125 (1339)
Q Consensus 1093 f~~~-----~lgd~~~~~~~l~~~~~~~~A~~~A~t~~ 1125 (1339)
+..+ ..|+++++|+++- .++.+|||-.
T Consensus 540 ~~tlaq~~lQ~~~i~eAielFE------ksa~lArt~~ 571 (606)
T KOG0547|consen 540 YETLAQFELQRGKIDEAIELFE------KSAQLARTES 571 (606)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH------HHHHHHHhHH
Confidence 7752 8899999999887 4667777643
No 439
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.89 E-value=12 Score=47.77 Aligned_cols=104 Identities=13% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC---------
Q 000709 226 GEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV--------- 296 (1339)
Q Consensus 226 dg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~--------- 296 (1339)
-++.-+.-+...++.|||.+.+....+ ..+ ...+.|.++.|... ++++.+++.|-.+.|.+|--.
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~----~~f-~~~~~I~dLDWtst-~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p 113 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYE----ESF-SEDDPIRDLDWTST-PDGQSILAVGFPHHVLLYTQLRYDYTNKGP 113 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEe----eee-cCCCceeeceeeec-CCCCEEEEEEcCcEEEEEEccchhhhcCCc
Confidence 444444445556799999998764322 122 34677999999874 578899999999999998532
Q ss_pred CCeeEEEecCCCcccccC-CceeEEEeCCCCCEEEEecCCe-EEE
Q 000709 297 SFKELRRIKPVPKLACHS-VASWCHPRAPNLDILTCVKDSH-IWA 339 (1339)
Q Consensus 297 t~~~l~~~~~~~~l~~H~-~~V~svafspdg~iLs~s~Dg~-LWD 339 (1339)
+...++.+. +..|+ ..|....|.++|.++.++...- |+|
T Consensus 114 ~w~~i~~i~----i~~~T~h~Igds~Wl~~G~LvV~sGNqlfv~d 154 (631)
T PF12234_consen 114 SWAPIRKID----ISSHTPHPIGDSIWLKDGTLVVGSGNQLFVFD 154 (631)
T ss_pred ccceeEEEE----eecCCCCCccceeEecCCeEEEEeCCEEEEEC
Confidence 222333321 34444 4688899999998876654443 443
No 440
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.75 E-value=2.9 Score=54.41 Aligned_cols=108 Identities=15% Similarity=0.009 Sum_probs=72.0
Q ss_pred HHHHhcCCHHHHHHHHHh---cCchh---hHHHHHHHHhCCcchhhccc-------ccccCccEEEee---cccccHHHH
Q 000709 909 RCLAAYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHL-------PGISKRLEFDLA---MQSNDLKRA 972 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~---i~~~~---~~~~a~fL~~~G~~e~Al~~-------~~d~~~~~f~La---~~~g~l~~a 972 (1339)
+.+..+|++++|.+++.+ +.+++ +-..|.-|.++++.|+||.. .-++.++.+-+| .++|+.++|
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHH
Confidence 345567999999998887 44444 55677788899999888752 222233444443 466777888
Q ss_pred HHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000709 973 LQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1339)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1339)
.++-..+-. ...+ +++-|-.+|......|+.+.|..+|+++.+.
T Consensus 174 ~~~y~~~~~-~~p~------------------------------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 174 DACFERLSR-QHPE------------------------------FENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHh-cCCC------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777654322 1111 2267777888888888888888888888444
No 441
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=84.70 E-value=2.6 Score=48.75 Aligned_cols=123 Identities=21% Similarity=0.146 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHh----cCchhhHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHhccCCCccCCCCC
Q 000709 915 GDSVSAVKWASR----LGREHHDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHP 990 (1339)
Q Consensus 915 ~~~~~a~~~~~~----i~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~ 990 (1339)
+||++|++.+.+ -|+.+.-.||+|.- |.|.+.-. ..+++.|.+.++.- +.
T Consensus 155 reW~KAId~A~~L~k~~~q~~~~eIAqfyC-----ELAq~~~~------------~~~~d~A~~~l~kA-----lq---- 208 (389)
T COG2956 155 REWEKAIDVAERLVKLGGQTYRVEIAQFYC-----ELAQQALA------------SSDVDRARELLKKA-----LQ---- 208 (389)
T ss_pred hHHHHHHHHHHHHHHcCCccchhHHHHHHH-----HHHHHHhh------------hhhHHHHHHHHHHH-----Hh----
Confidence 888888887775 46666777888854 55554332 33455555555320 00
Q ss_pred CCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcC
Q 000709 991 GLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHG 1070 (1339)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g 1070 (1339)
+|.. ..+-=..||+.++.+|+++-|.++|++. -.-+.+++..-+..|.-.|...|
T Consensus 209 --------------a~~~--------cvRAsi~lG~v~~~~g~y~~AV~~~e~v---~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 209 --------------ADKK--------CVRASIILGRVELAKGDYQKAVEALERV---LEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred --------------hCcc--------ceehhhhhhHHHHhccchHHHHHHHHHH---HHhChHHHHHHHHHHHHHHHHhC
Confidence 0000 0022345899999999999999999998 44455666666677777888888
Q ss_pred ChhHHHHHHHHHHHcCCC
Q 000709 1071 ELTRLSGLVTNLISLGLG 1088 (1339)
Q Consensus 1071 ~~~~l~~l~~~a~~~~~~ 1088 (1339)
..+....-+..+.....+
T Consensus 264 ~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 264 KPAEGLNFLRRAMETNTG 281 (389)
T ss_pred CHHHHHHHHHHHHHccCC
Confidence 888877777777766655
No 442
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=84.07 E-value=15 Score=50.03 Aligned_cols=82 Identities=15% Similarity=0.044 Sum_probs=45.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH-----HHc
Q 000709 1024 LIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA-----AIL 1098 (1339)
Q Consensus 1024 l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~-----~~l 1098 (1339)
|+......|+++.|..+|+++.... ++ ..-+..|..+|...|+.+...+....+....-.+..+... ...
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~-P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIA-PS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444444477777777777774332 11 1134556666677777777766666666654331212111 156
Q ss_pred CCHHHHHHHHHH
Q 000709 1099 GDNALMEKAWQD 1110 (1339)
Q Consensus 1099 gd~~~~~~~l~~ 1110 (1339)
|+.+++++.+.+
T Consensus 657 G~~eeAi~~l~~ 668 (987)
T PRK09782 657 GDIAQSREMLER 668 (987)
T ss_pred CCHHHHHHHHHH
Confidence 677776666554
No 443
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=84.00 E-value=3 Score=46.09 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=57.8
Q ss_pred EEEEEecCcEE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-
Q 000709 135 FLVICCVNKAI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHK- 212 (1339)
Q Consensus 135 lLasgs~dg~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~- 212 (1339)
-+++|+.++.+ .|++.... ...-........|-|+--. -.++.+..+++.||.||.|+..-.+.+...- .|+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g-~~~d~~~s~~e~i~~~Ip~----~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~ 145 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEG-AHSDRVCSGEESIDLGIPN----GRDSSLGCVGAQDGRIRACNIKPNKVLGYVG-QHNF 145 (238)
T ss_pred eEEeecccceEEEecCCccc-hHHHhhhcccccceecccc----ccccceeEEeccCCceeeeccccCceeeeec-cccC
Confidence 56777778877 55444110 0011112223344443221 2345688999999999999998777766553 565
Q ss_pred CCeeEEEEeeeCCCCCEEEEE--eCCCcEEEEeCCC
Q 000709 213 GSISCLMTFMASSGEALLVSG--GSDGLLILWSADH 246 (1339)
Q Consensus 213 ~~V~sl~wf~~spdg~~LaSg--S~DgtVrVWDl~t 246 (1339)
.++.... ....+..++++ |.|..++.|++..
T Consensus 146 ~~~e~~i---vv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELI---VVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeE---EecCCceEEeeccccchhhhhcchhh
Confidence 3333332 34445555555 6666666666543
No 444
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.99 E-value=59 Score=41.89 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=39.4
Q ss_pred hHhcCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHHHcC-----------CchHHHHHHHHhCCCChHHHHH
Q 000709 1066 LANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTG-----------MLAEAVLHAHAHGRPSLKNLVE 1134 (1339)
Q Consensus 1066 ~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~-----------~~~~A~~~A~t~~~~~~~~~~~ 1134 (1339)
++..||..++.+++....+.|.. -..|...++..+.....+- .| +...+.-.|+.+....+..+++
T Consensus 256 al~~~d~~~al~~l~~L~~~g~~-~~~il~~L~~~lR~Ll~lk--~g~~~~~l~i~p~~~~~~~~qa~~~s~~~L~~~l~ 332 (585)
T PRK14950 256 ALLAKDLKAALRTLNAVAADGAD-LRQFTRDLVEYLRQVMLLN--SGADRSLLDLTADEKAALQKVSQIANLEALTKWVK 332 (585)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHh--hcCccccccCCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44578888888888888888875 5555543333333332221 12 1123345666677666655555
Q ss_pred HHHH
Q 000709 1135 AWNK 1138 (1339)
Q Consensus 1135 ~w~~ 1138 (1339)
.-.+
T Consensus 333 ~l~~ 336 (585)
T PRK14950 333 AFSQ 336 (585)
T ss_pred HHHH
Confidence 4443
No 445
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=83.01 E-value=7 Score=40.49 Aligned_cols=65 Identities=9% Similarity=-0.027 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCC
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGL 1087 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~ 1087 (1339)
.-|..+|..+...|+++.|..+|+++.... +..+- -+-.|...|...|+.++..+....|....-
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~---a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPE---PVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 689999999999999999999999995432 11100 134455555566666666666555555443
No 446
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=82.67 E-value=0.69 Score=53.23 Aligned_cols=142 Identities=18% Similarity=0.171 Sum_probs=26.9
Q ss_pred hHHHHHHHHhCCcchhhccccc-c------cCcc-----EEEeecccccHHHHHHHHHhccCCCccCCCCCCCCcccccc
Q 000709 932 HDDLAQFMLGMGYATEALHLPG-I------SKRL-----EFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILT 999 (1339)
Q Consensus 932 ~~~~a~fL~~~G~~e~Al~~~~-d------~~~~-----~f~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 999 (1339)
..++|+-+-..|.+++||.+.. . ..+. .-+||..+++.+.|.++...+-.....
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-------------- 76 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-------------- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------------
Confidence 3456777777788888876552 1 1122 237777788888877776544322110
Q ss_pred cccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCccccccccchhhhHHHhHhcCChhHHHHH
Q 000709 1000 LTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAA-AGSVKGALQGHELRGLALRLANHGELTRLSGL 1078 (1339)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~-~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l 1078 (1339)
......+|+.. +..++.+.|.+.+.++-. ++++ .-+..++-+|...|+.+++..+
T Consensus 77 -----------------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~~~~~~~~ 132 (280)
T PF13429_consen 77 -----------------NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDP------RYLLSALQLYYRLGDYDEAEEL 132 (280)
T ss_dssp -----------------------------------------------------------------H-HHHTT-HHHHHHH
T ss_pred -----------------ccccccccccc-ccccccccccccccccccccccc------chhhHHHHHHHHHhHHHHHHHH
Confidence 11356667777 677777766544433200 0211 1334555667777888888888
Q ss_pred HHHHHHcCCC-hHHH-HHH---H--HcCCHHHHHHHHHHc
Q 000709 1079 VTNLISLGLG-REAA-FSA---A--ILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1079 ~~~a~~~~~~-~~~a-f~~---~--~lgd~~~~~~~l~~~ 1111 (1339)
++.+...... .+.. |.. . -.|+.+++++.+.+.
T Consensus 133 l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 133 LEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp HHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776654421 1222 221 1 567888887777654
No 447
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=82.46 E-value=3.7 Score=41.25 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAA 1046 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~ 1046 (1339)
.-|..+|.....+|+++.|.++|+++..
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5888899999999999999999998843
No 448
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.44 E-value=3.4 Score=36.41 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000709 1018 AKEFLDLIDAADATGQANIAREALKRLAAA 1047 (1339)
Q Consensus 1018 ~~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1339)
+..|..+|..+..+|+++.|+++|+++-..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 379999999999999999999999999544
No 449
>PHA03098 kelch-like protein; Provisional
Probab=82.32 E-value=53 Score=41.62 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=52.1
Q ss_pred CCCeEEEEEec--C-----cEEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC--------CcEEE
Q 000709 131 KGRHFLVICCV--N-----KAIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD--------GVIRV 195 (1339)
Q Consensus 131 dg~~lLasgs~--d-----g~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D--------gtIrI 195 (1339)
+++ +.+.|+. + ...++|..+.+...+...........++.. ++...+.|+.+ ..+.+
T Consensus 389 ~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~v~~ 460 (534)
T PHA03098 389 NNL-IYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH-------DGKIYVIGGISYIDNIKVYNIVES 460 (534)
T ss_pred CCE-EEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE-------CCEEEEECCccCCCCCcccceEEE
Confidence 454 6666652 1 123568777655443222111111222223 56666777643 23888
Q ss_pred EECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 000709 196 LSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQ 248 (1339)
Q Consensus 196 WDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-----gtVrVWDl~tg~ 248 (1339)
||..+.+....-...+...-.++. .-++.+++.|+.+ +.|.+||..+.+
T Consensus 461 yd~~~~~W~~~~~~~~~r~~~~~~----~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 461 YNPVTNKWTELSSLNFPRINASLC----IFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ecCCCCceeeCCCCCcccccceEE----EECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 998865443221101111112222 1166777777654 467788877654
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=82.26 E-value=0.68 Score=58.92 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEe--------eeCCCCCEEEEEeC
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTF--------MASSGEALLVSGGS 235 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf--------~~spdg~~LaSgS~ 235 (1339)
..++.-|.|.|. -++.-++..+-.++.|++.++.+... ..+. +|...+..+++| ..+|||..|+.++.
T Consensus 180 gs~~~~V~wcp~--~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~r-sHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPI--AVNKVYICYGLKGGEIRLLNINRALR-SLFR-SHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeeccc--ccccceeeeccCCCceeEeeechHHH-HHHH-hcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 455666777654 34567888888999999988764322 2333 687777666432 36899999999999
Q ss_pred CCcEEEEeCC-CCCccceecccccccccccc--eEEEEeeccC------CCCCEEEEEeC-CCcEEEEECCCCeeE
Q 000709 236 DGLLILWSAD-HGQDSRELVPKLSLKAHDGG--VVAVELSRVM------GGSPQLITIGA-DKTLAIWDTVSFKEL 301 (1339)
Q Consensus 236 DgtVrVWDl~-tg~~~~~~~~~~~l~gH~~~--V~svafsp~~------~dg~~LaSgs~-Dg~IrIWDl~t~~~l 301 (1339)
||.+++|.+. +|+.... +...++.|++. |.++ |+... +.-.+++++++ .+.+++|....++|+
T Consensus 256 dG~v~f~Qiyi~g~~~~r--clhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 256 DGSVGFYQIYITGKIVHR--CLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCccceeeeeeeccccHh--hhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999999764 2322211 22234556532 3333 33210 00124555554 567999998888776
No 451
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=81.41 E-value=5.2 Score=47.67 Aligned_cols=171 Identities=15% Similarity=0.061 Sum_probs=95.1
Q ss_pred ecChhHHHhHHHHhcCCHHHHHHHHHhcCchh-hHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHHHh
Q 000709 900 SLSHPGIRCRCLAAYGDSVSAVKWASRLGREH-HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCLIT 978 (1339)
Q Consensus 900 ~l~~~~~~~~~~~~~~~~~~a~~~~~~i~~~~-~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~~~ 978 (1339)
++.-..++=+|++.-||+++|....-.|=+.. -+.-|.++.+.=++- .+ ++.+....+++|+.+...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy------~~------~~~ka~~hf~qal~ldpd 235 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY------ND------NADKAINHFQQALRLDPD 235 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc------cc------chHHHHHHHhhhhccChh
Confidence 34556777789999999999988666533222 344455555442211 11 112222233333333211
Q ss_pred ccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccc
Q 000709 979 MSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHE 1058 (1339)
Q Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d 1058 (1339)
-.+++. .--.... -+.|+.=|..+-++|++..|.|||..+-+. ..+.
T Consensus 236 h~~sk~-----------------------~~~~~k~---le~~k~~gN~~fk~G~y~~A~E~Yteal~i-------dP~n 282 (486)
T KOG0550|consen 236 HQKSKS-----------------------ASMMPKK---LEVKKERGNDAFKNGNYRKAYECYTEALNI-------DPSN 282 (486)
T ss_pred hhhHHh-----------------------HhhhHHH---HHHHHhhhhhHhhccchhHHHHHHHHhhcC-------Cccc
Confidence 000000 0000111 168999999999999999999999999544 3346
Q ss_pred hhhhHHHhHhcC----ChhHHHHHHHHHHHcCCChH---HHHH----H-HHcCCHHHHHHHHHHcCCch
Q 000709 1059 LRGLALRLANHG----ELTRLSGLVTNLISLGLGRE---AAFS----A-AILGDNALMEKAWQDTGMLA 1115 (1339)
Q Consensus 1059 ~~~l~ll~~~~g----~~~~l~~l~~~a~~~~~~~~---~af~----~-~~lgd~~~~~~~l~~~~~~~ 1115 (1339)
..-++.||.+.+ .+.+|++-+..|...=.... -|++ | +.|++.+++|+.+.++.+..
T Consensus 283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 667777777654 23344444444444333211 1222 3 27888888888887665543
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.35 E-value=1.5 Score=56.03 Aligned_cols=120 Identities=8% Similarity=0.009 Sum_probs=78.5
Q ss_pred ccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECC--CCeE----EEEEecCCCCCeeEEEEeeeCCCCCEEEEEe
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMI--SWKL----VRRYTGGHKGSISCLMTFMASSGEALLVSGG 234 (1339)
Q Consensus 161 ~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~--t~~~----i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS 234 (1339)
++-.+.|..+.|- ...+|.+. -.-|.+.|||+. .|+. .-+.......++.-+.|+.+-++.-++..+-
T Consensus 129 kgf~G~v~dl~fa-h~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~ 202 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFA-HTKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL 202 (1283)
T ss_pred hcCCCCccccccc-ccCChHHH-----HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc
Confidence 4556778888882 22223333 234678899875 3332 2222223455667777887888888999999
Q ss_pred CCCcEEEEeCCCCCccceecccccccccccceEEEEe-----------eccCCCCCEEEEEeCCCcEEEEECC
Q 000709 235 SDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVEL-----------SRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 235 ~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svaf-----------sp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
.+++|++..++.... .-+.+|..++..++| +| ||..++.++.||.+++|.+.
T Consensus 203 ~~~~i~lL~~~ra~~-------~l~rsHs~~~~d~a~~~~g~~~l~~lSp---DGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 203 KGGEIRLLNINRALR-------SLFRSHSQRVTDMAFFAEGVLKLASLSP---DGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred CCCceeEeeechHHH-------HHHHhcCCCcccHHHHhhchhhheeeCC---CCcEEEEeecCCccceeeee
Confidence 999999987765432 114557777666554 55 88899999999988888653
No 453
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.03 E-value=19 Score=43.90 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=73.3
Q ss_pred CeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEE-----------------------------------------
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLV----------------------------------------- 204 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i----------------------------------------- 204 (1339)
.|+++.| +++..-+++|...|.|.||.+...+..
T Consensus 3 ~v~~vs~-----a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSF-----APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEE-----ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEe-----cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence 4677777 566777888888888888876421110
Q ss_pred -EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccc--cccccccceEEEEeecc--CCCC-
Q 000709 205 -RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKL--SLKAHDGGVVAVELSRV--MGGS- 278 (1339)
Q Consensus 205 -~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~--~l~gH~~~V~svafsp~--~~dg- 278 (1339)
..+.....+.|++++ .+ |=-+++.|..+|++.|.|++....+..-.... .-......|+++.|... .+|+
T Consensus 78 P~~l~~~~~g~vtal~---~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALK---NS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEE---S-SEEEEE---E--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred chhheeccCCcEeEEe---cC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 111113467788886 44 55699999999999999998776554311111 11123456888888742 1233
Q ss_pred --CEEEEEeCCCcEEEEECC
Q 000709 279 --PQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 279 --~~LaSgs~Dg~IrIWDl~ 296 (1339)
..+++|...|.+.+|.+.
T Consensus 154 SSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEE
T ss_pred cceEEEEEeCCCCEEEEEEe
Confidence 578889999999999763
No 454
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=80.68 E-value=22 Score=46.32 Aligned_cols=80 Identities=18% Similarity=0.013 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHH--
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-- 1096 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-- 1096 (1339)
.-|..||+....+|+++-+..|.-.++- ++-++.+--..+++.+.+.|.+ +.|-.|+
T Consensus 174 ~ay~tL~~IyEqrGd~eK~l~~~llAAH--------------------L~p~d~e~W~~ladls~~~~~i-~qA~~cy~r 232 (895)
T KOG2076|consen 174 IAYYTLGEIYEQRGDIEKALNFWLLAAH--------------------LNPKDYELWKRLADLSEQLGNI-NQARYCYSR 232 (895)
T ss_pred hhHHHHHHHHHHcccHHHHHHHHHHHHh--------------------cCCCChHHHHHHHHHHHhcccH-HHHHHHHHH
Confidence 5899999999999999998888887732 2557777778888889999988 4444442
Q ss_pred ---HcCC----HHHHHHHHHHcCCchHHHH
Q 000709 1097 ---ILGD----NALMEKAWQDTGMLAEAVL 1119 (1339)
Q Consensus 1097 ---~lgd----~~~~~~~l~~~~~~~~A~~ 1119 (1339)
+.++ +-++..+++++|.++.|+.
T Consensus 233 AI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 4444 3567899999999999874
No 455
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.58 E-value=2.8 Score=52.54 Aligned_cols=92 Identities=11% Similarity=0.057 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCCh-HHHHHHH-
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGR-EAAFSAA- 1096 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~-~~af~~~- 1096 (1339)
.-|--||-.+++|++++.|+.-||++...+..+.++.-| +...|-..|..++.-.+.+.|..-.-.+ ...|..+
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~----~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH----IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh----hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 689999999999999999999999998877555555433 3445666788888888888888755442 2457652
Q ss_pred ---HcCCHHHHHHHHHHcCCc
Q 000709 1097 ---ILGDNALMEKAWQDTGML 1114 (1339)
Q Consensus 1097 ---~lgd~~~~~~~l~~~~~~ 1114 (1339)
.+++.++|.+.|.+-..+
T Consensus 566 il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh
Confidence 789999999988765543
No 456
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.51 E-value=1.3e+02 Score=35.70 Aligned_cols=75 Identities=8% Similarity=-0.040 Sum_probs=42.4
Q ss_pred ccceEEEEeeccC----CCCCEEEEEeCCCcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEE-EEecCCeE
Q 000709 263 DGGVVAVELSRVM----GGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSHI 337 (1339)
Q Consensus 263 ~~~V~svafsp~~----~dg~~LaSgs~Dg~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iL-s~s~Dg~L 337 (1339)
...+..+.|.... -.+.++++.-..+.|...++.....+..... -+......+..+++.|||.+. +...+|.|
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~i 329 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FLGGFGGRPRDVAQGPDGALYVSDDSDGKI 329 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--ECTTSSS-EEEEEEETTSEEEEEE-TTTTE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--ccccCCCCceEEEEcCCCeEEEEECCCCeE
Confidence 3567778877510 0345666666667887777764433322111 123444478899999999865 44567778
Q ss_pred EE
Q 000709 338 WA 339 (1339)
Q Consensus 338 WD 339 (1339)
|.
T Consensus 330 yR 331 (331)
T PF07995_consen 330 YR 331 (331)
T ss_dssp EE
T ss_pred eC
Confidence 73
No 457
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.44 E-value=1.6e+02 Score=38.97 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=21.2
Q ss_pred cceEEEEeeccCCCCCEEEEEeCCCcEEEEECCC
Q 000709 264 GGVVAVELSRVMGGSPQLITIGADKTLAIWDTVS 297 (1339)
Q Consensus 264 ~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t 297 (1339)
..|..+.|||...++..|+.-..|+++|+||+..
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 3466667776433456666666677777777654
No 458
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=80.22 E-value=7.5 Score=44.81 Aligned_cols=89 Identities=22% Similarity=0.118 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcC-ChhHHHHHHHHHHHcCCChHH-----H
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHG-ELTRLSGLVTNLISLGLGREA-----A 1092 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g-~~~~l~~l~~~a~~~~~~~~~-----a 1092 (1339)
+.|..||.+++.+|+++.|..+|.++--...-|..+.+. -.=.|.|..-| ...+-+.|.+.+.+....|.. |
T Consensus 157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g--~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLG--LAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 799999999999999999999999983322111111000 11123344433 345667777777777666221 2
Q ss_pred HHHHHcCCHHHHHHHHH
Q 000709 1093 FSAAILGDNALMEKAWQ 1109 (1339)
Q Consensus 1093 f~~~~lgd~~~~~~~l~ 1109 (1339)
|.++..||+++++..|+
T Consensus 235 ~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 235 FAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHcccHHHHHHHHH
Confidence 33346677776666655
No 459
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=80.20 E-value=27 Score=46.52 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=67.5
Q ss_pred HHHHhcCCHHHHHHHHHhcC----ch--hhHHHHHHHHhCCcchhhcccccc-------cCccEEEee---cccccHHHH
Q 000709 909 RCLAAYGDSVSAVKWASRLG----RE--HHDDLAQFMLGMGYATEALHLPGI-------SKRLEFDLA---MQSNDLKRA 972 (1339)
Q Consensus 909 ~~~~~~~~~~~a~~~~~~i~----~~--~~~~~a~fL~~~G~~e~Al~~~~d-------~~~~~f~La---~~~g~l~~a 972 (1339)
+.+.-.|+.++|+++..... .. -+..+|..+..+|..++|+.+... ++...+.|+ +..|++++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55667799999988766622 22 277888888888888888754322 123333333 356777777
Q ss_pred HHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 000709 973 LQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAA 1046 (1339)
Q Consensus 973 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~ 1046 (1339)
++.++.+... ..+ +.. |..||.....+|+++.|..+|+++-.
T Consensus 103 ~~~l~~~l~~-~P~------------------------------~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 103 LVKAKQLVSG-APD------------------------------KAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHh-CCC------------------------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776543221 111 115 77788888888888888888887733
No 460
>PHA03247 large tegument protein UL36; Provisional
Probab=80.17 E-value=29 Score=50.09 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=18.0
Q ss_pred HHHHhCCcchhhcccccccCccEEEee
Q 000709 937 QFMLGMGYATEALHLPGISKRLEFDLA 963 (1339)
Q Consensus 937 ~fL~~~G~~e~Al~~~~d~~~~~f~La 963 (1339)
.||.+-=|--.||..-..+ +.||-+|
T Consensus 785 YflRGa~YSakAl~ad~~~-~~RF~VA 810 (3151)
T PHA03247 785 YFHRGAVYSAKALLAGDAR-DRRFHVA 810 (3151)
T ss_pred HHHhhHHHHHHHHhcccCC-CceEEEe
Confidence 4555666777777766664 7888887
No 461
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=79.93 E-value=3.2 Score=43.03 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAA 1047 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1339)
.-|..+|......|+++.|.++|+++-..
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999998433
No 462
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=79.85 E-value=1.8e+02 Score=36.84 Aligned_cols=151 Identities=12% Similarity=0.102 Sum_probs=83.3
Q ss_pred CceEEEEEcCCe-EEEEEc--CCccccccccccccccCCCCeeeeeeCCC----CCeEEEEEecCcEEEEEec--CCc-e
Q 000709 85 GSVKQVNFYDDD-VRFWQL--WRNRAAAAEAPTAVSNVTSGFASPPPSTK----GRHFLVICCVNKAIFLDLV--TMR-G 154 (1339)
Q Consensus 85 g~V~sVaF~Dg~-IrlWDl--~~~~~l~~~~~~~~~~~~~~V~slafspd----g~~lLasgs~dg~I~wD~~--t~~-~ 154 (1339)
.++.+++|.||. |.+-++ ..++.... .....+. ...|..+.|.|- .+.+|++-....+.+|-+. ..+ .
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfG-ds~viGq-FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~ 97 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFG-DSKVIGQ-FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERN 97 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccC-CccEeec-cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccc
Confidence 688889996664 444444 33332111 1122222 345889999885 4458888888888799543 111 1
Q ss_pred eeccccccC-----CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCCeeEEEEeeeCCCC
Q 000709 155 RDIPKQELD-----NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISW--KLVRRYTGGHKGSISCLMTFMASSGE 227 (1339)
Q Consensus 155 ~~v~~~~~h-----~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~--~~i~~l~~gH~~~V~sl~wf~~spdg 227 (1339)
+.+.....+ .--...+.||| ....|++-.....-.+++++.. +....+ ...+.|.|.+| .+||
T Consensus 98 K~l~sQtcEi~e~~pvLpQGCVWHP-----k~~iL~VLT~~dvSV~~sV~~d~srVkaDi--~~~G~IhCACW---T~DG 167 (671)
T PF15390_consen 98 KLLMSQTCEIREPFPVLPQGCVWHP-----KKAILTVLTARDVSVLPSVHCDSSRVKADI--KTSGLIHCACW---TKDG 167 (671)
T ss_pred cceeeeeeeccCCcccCCCcccccC-----CCceEEEEecCceeEeeeeeeCCceEEEec--cCCceEEEEEe---cCcC
Confidence 111111111 11234466854 5666666555444456676533 333333 46788999996 5688
Q ss_pred CEEEEE-eCCCcEEEEeCCCC
Q 000709 228 ALLVSG-GSDGLLILWSADHG 247 (1339)
Q Consensus 228 ~~LaSg-S~DgtVrVWDl~tg 247 (1339)
+.|+.+ +..=.-.+||-...
T Consensus 168 ~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 168 QRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CEEEEEeCCeEEEEEecCchh
Confidence 776654 33344568886544
No 463
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=79.79 E-value=6.7 Score=49.04 Aligned_cols=159 Identities=23% Similarity=0.171 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHh-c-------Cchh------hHHHHHHHHhCCcchhhcccccccCccEEEeecccccHHHHHHHH
Q 000709 911 LAAYGDSVSAVKWASR-L-------GREH------HDDLAQFMLGMGYATEALHLPGISKRLEFDLAMQSNDLKRALQCL 976 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~-i-------~~~~------~~~~a~fL~~~G~~e~Al~~~~d~~~~~f~La~~~g~l~~a~~~~ 976 (1339)
.+.+|+|+.|..+... + |.+| .+.+|.++..+|-+.+|..+. +.|+.|.
T Consensus 209 y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly-----------------~~AL~i~ 271 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLY-----------------EEALTIR 271 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHH-----------------HHHHHHH
Confidence 4567999999887665 1 2112 345667777777777776655 4455554
Q ss_pred HhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccc
Q 000709 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQG 1056 (1339)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~ 1056 (1339)
...-. -. .+++ +.-...|+.+..++|++..|+.|++++-+. ...+.+
T Consensus 272 e~~~G-----~~-------------------h~~v------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I---~~~~~~ 318 (508)
T KOG1840|consen 272 EEVFG-----ED-------------------HPAV------AATLNNLAVLYYKQGKFAEAEEYCERALEI---YEKLLG 318 (508)
T ss_pred HHhcC-----CC-------------------CHHH------HHHHHHHHHHHhccCChHHHHHHHHHHHHH---HHHhhc
Confidence 32111 01 0111 146788999999999999999999998322 111111
Q ss_pred c-------chhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH---HHcCCHHHHHHHHHHcCCchHHHHHHH
Q 000709 1057 H-------ELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA---AILGDNALMEKAWQDTGMLAEAVLHAH 1122 (1339)
Q Consensus 1057 ~-------d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~---~~lgd~~~~~~~l~~~~~~~~A~~~A~ 1122 (1339)
. -+..+..+++..++.+...++...+.+.=.. +|-. -+-|=....-.++..+|++.||.-+.+
T Consensus 319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~---~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD---APGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh---hccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1 2345566666667666666665544331110 1110 012222333445666777776665544
No 464
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.66 E-value=3.3 Score=30.97 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
+-|..||..+..+|+++.|.++|+++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 57899999999999999999999998
No 465
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.60 E-value=3.3 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLA 1045 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1339)
+-|-.+|.....+|+++.|.+||+++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 579999999999999999999999983
No 466
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=79.58 E-value=13 Score=48.54 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=64.2
Q ss_pred HHHHHHHhcCc--hhhHHHHHHHHhCCcchhhccc-------ccccCccEEEee---cccccHHHHHHHHHhccCCCccC
Q 000709 919 SAVKWASRLGR--EHHDDLAQFMLGMGYATEALHL-------PGISKRLEFDLA---MQSNDLKRALQCLITMSNSRDIG 986 (1339)
Q Consensus 919 ~a~~~~~~i~~--~~~~~~a~fL~~~G~~e~Al~~-------~~d~~~~~f~La---~~~g~l~~a~~~~~~~~~~~~~~ 986 (1339)
++..++.+.++ +-|..+|+-++..|..|+|+.+ .-|....+.++| .+.+++++|++.+...-.. +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~-~p- 151 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG-GS- 151 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-CC-
Confidence 34444444443 4477899999999999998763 222234445544 4678888888887643111 11
Q ss_pred CCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000709 987 QDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLA 1045 (1339)
Q Consensus 987 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~ 1045 (1339)
.....-..+|......|+++.|+++|.++.
T Consensus 152 -----------------------------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 152 -----------------------------SSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 112456667999999999999999999993
No 467
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.97 E-value=2.2e+02 Score=38.22 Aligned_cols=29 Identities=7% Similarity=-0.279 Sum_probs=13.3
Q ss_pred HcCCHHHHHHHHHHcCCc--hHHHHHHHHhC
Q 000709 1097 ILGDNALMEKAWQDTGML--AEAVLHAHAHG 1125 (1339)
Q Consensus 1097 ~lgd~~~~~~~l~~~~~~--~~A~~~A~t~~ 1125 (1339)
++..+.++++.+...... ..-.++.|...
T Consensus 334 ~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 334 AADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 344455555555554432 33334444443
No 468
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=78.71 E-value=55 Score=43.78 Aligned_cols=73 Identities=21% Similarity=0.226 Sum_probs=38.9
Q ss_pred hcCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHH--H--------HHHH--cCCchHHHHHHHHhCCCChHHHHHH
Q 000709 1068 NHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALME--K--------AWQD--TGMLAEAVLHAHAHGRPSLKNLVEA 1135 (1339)
Q Consensus 1068 ~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~--~--------~l~~--~~~~~~A~~~A~t~~~~~~~~~~~~ 1135 (1339)
..||...+-.+++.....|.. -..|...++.-+...+ + .+.+ ..+.......|+.++...|..+++.
T Consensus 259 ~~~D~a~al~~l~~Li~~G~d-p~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L~~qA~~~s~~~L~r~ie~ 337 (824)
T PRK07764 259 AAGDGAALFGTVDRVIEAGHD-PRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRMRAQAQRLGPAELTRAADV 337 (824)
T ss_pred HcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 467888888888887777765 4445442222221111 1 1111 1222233455677777777777766
Q ss_pred HHHHHh
Q 000709 1136 WNKMLQ 1141 (1339)
Q Consensus 1136 w~~~l~ 1141 (1339)
..+.+.
T Consensus 338 l~ea~~ 343 (824)
T PRK07764 338 VNDGLT 343 (824)
T ss_pred HHHHHH
Confidence 666643
No 469
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=78.40 E-value=85 Score=37.35 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=35.4
Q ss_pred eEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceeccc-ccccccccceEEEEeeccCCCCCEEE
Q 000709 216 SCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPK-LSLKAHDGGVVAVELSRVMGGSPQLI 282 (1339)
Q Consensus 216 ~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~-~~l~gH~~~V~svafsp~~~dg~~La 282 (1339)
+.|+ +.|+++++++ ...|.|++++ ..+.....+... ............++++|......+|.
T Consensus 5 ~~~a---~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lY 67 (331)
T PF07995_consen 5 RSMA---FLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLY 67 (331)
T ss_dssp EEEE---EETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred eEEE---EeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEE
Confidence 4555 6788888776 5699999999 444331111111 12344567899999999433333443
No 470
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=78.40 E-value=72 Score=39.07 Aligned_cols=159 Identities=12% Similarity=0.056 Sum_probs=71.3
Q ss_pred CCCCCeEEEEEe-------cCcEEEEEecCCceeecccccc---CCCCeEEEEEeeccccCCCCEEEEEEC---------
Q 000709 129 STKGRHFLVICC-------VNKAIFLDLVTMRGRDIPKQEL---DNKSLVCMEFLSRSAVGDVPLVAFGSS--------- 189 (1339)
Q Consensus 129 spdg~~lLasgs-------~dg~I~wD~~t~~~~~v~~~~~---h~~~V~~vaf~P~s~Spdg~~LasGs~--------- 189 (1339)
-|+|+ +++++- ..+.+.+|-++.+.+. .... ....-+.+-|+ |..+.++|...
T Consensus 138 lp~G~-imIS~lGd~~G~g~Ggf~llD~~tf~v~g--~We~~~~~~~~gYDfw~q-----pr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 138 LPDGR-IMISALGDADGNGPGGFVLLDGETFEVKG--RWEKDRGPQPFGYDFWYQ-----PRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-TTT--EEE--E--SB-TT------EEEE-----TTTTEEEE-B---HHHHTT-
T ss_pred cCCcc-EEEEeccCCCCCCCCcEEEEcCccccccc--eeccCCCCCCCCCCeEEc-----CCCCEEEEeccCChhhcccC
Confidence 36786 666652 3345566777654432 1221 23345667774 45666666542
Q ss_pred -----------CCcEEEEECCCCeEEEEEecCCCC-CeeEEEEeeeCCCCCE-EEEEeCCCcEEEEeC-CCCCccc----
Q 000709 190 -----------DGVIRVLSMISWKLVRRYTGGHKG-SISCLMTFMASSGEAL-LVSGGSDGLLILWSA-DHGQDSR---- 251 (1339)
Q Consensus 190 -----------DgtIrIWDl~t~~~i~~l~~gH~~-~V~sl~wf~~spdg~~-LaSgS~DgtVrVWDl-~tg~~~~---- 251 (1339)
..++.+||+.+.+.++++.-+..+ -..-+.|. ..|+..+ ++.+....+|..|-- ..++...
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRfl-H~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi 288 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFL-HDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVI 288 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE--SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEec-CCCCccceEEEEeccceEEEEEEcCCCCeeeeEEE
Confidence 457999999999999999745443 34456533 4555544 455555666665544 3332111
Q ss_pred eeccc----c-------cccccccceEEEEeeccCCCCCEEE-EEeCCCcEEEEECCCCe
Q 000709 252 ELVPK----L-------SLKAHDGGVVAVELSRVMGGSPQLI-TIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 252 ~~~~~----~-------~l~gH~~~V~svafsp~~~dg~~La-Sgs~Dg~IrIWDl~t~~ 299 (1339)
++... . .+..-..-|+.+..|. |.++|. ++-.+|.|+.||+.+-.
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl---DDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISL---DDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-T---TS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEcc---CCCEEEEEcccCCcEEEEecCCCC
Confidence 00000 0 0011134578899998 455554 55579999999998643
No 471
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=78.19 E-value=2.3e+02 Score=37.14 Aligned_cols=137 Identities=15% Similarity=0.086 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccccccc---------chhh--hHHHhHhcCChhHHHHHHHHHHHcCCCh
Q 000709 1021 FLDLIDAADATGQANIAREALKRLAAAGSVKGALQGH---------ELRG--LALRLANHGELTRLSGLVTNLISLGLGR 1089 (1339)
Q Consensus 1021 w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~---------d~~~--l~ll~~~~g~~~~l~~l~~~a~~~~~~~ 1089 (1339)
...|++.+ .|++..|...+.++..++ .+-+... +-+. -++-++..|+..++.++++.....|..
T Consensus 203 L~~Ia~~A--~GslRdAlnLLDqaia~g--~g~It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d- 277 (709)
T PRK08691 203 LQLLGRAA--AGSMRDALSLLDQAIALG--SGKVAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVG- 277 (709)
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHhc--CCCcCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 44445444 577777777776654432 1111111 1111 122345567888888887777777765
Q ss_pred HHHHHH-H--HcCCHHHHHHHHHH--cCCchHHHHHHHHhCCCChHHHHHHHHHHHh--hhcCCCCcchhhHHHHHHhcc
Q 000709 1090 EAAFSA-A--ILGDNALMEKAWQD--TGMLAEAVLHAHAHGRPSLKNLVEAWNKMLQ--KEVDHTPTAKTDAAAAFLASL 1162 (1339)
Q Consensus 1090 ~~af~~-~--~lgd~~~~~~~l~~--~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l~--~~~~~~~~~~~~~~~~~~~~~ 1162 (1339)
-..|.. + ++-|+... +..-+ ....++...+.+--..-....+-..|+-.|+ +++.-.|..++-.=+.+|..+
T Consensus 278 ~~~~l~~L~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~ 356 (709)
T PRK08691 278 FDNALGELAILLQQLALI-QAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRML 356 (709)
T ss_pred HHHHHHHHHHHHHHHHHh-hcCchhccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 333332 1 22221111 00000 0011122222222222223444455555543 455668888888888888777
Q ss_pred C
Q 000709 1163 E 1163 (1339)
Q Consensus 1163 ~ 1163 (1339)
.
T Consensus 357 ~ 357 (709)
T PRK08691 357 A 357 (709)
T ss_pred h
Confidence 5
No 472
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=78.18 E-value=1.3e+02 Score=37.34 Aligned_cols=59 Identities=15% Similarity=0.266 Sum_probs=35.7
Q ss_pred CCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCcccee-cccccccccccceEEEEeecc
Q 000709 213 GSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSREL-VPKLSLKAHDGGVVAVELSRV 274 (1339)
Q Consensus 213 ~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~-~~~~~l~gH~~~V~svafsp~ 274 (1339)
..-+.|. +.|++++|++--..|.|++++-.++...... .+......-.++...|+++|.
T Consensus 30 ~~Pw~ma---flPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 30 NKPWALL---WGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCceEEE---EcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 3445565 6789988877655799999986554321110 011111113678999999994
No 473
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=78.13 E-value=12 Score=45.09 Aligned_cols=88 Identities=15% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHH---
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSA--- 1095 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~--- 1095 (1339)
.+++..|+.+...|+++.|.++|.++-... ++.+ .-+..++.+|...|+.+.....++.|....-.+-.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~---~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLD-PNNA---ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 578889999999999999999999995443 2111 124566778888999999999888887765442223221
Q ss_pred --HHcCCHHHHHHHHHH
Q 000709 1096 --AILGDNALMEKAWQD 1110 (1339)
Q Consensus 1096 --~~lgd~~~~~~~l~~ 1110 (1339)
+.+|+++++++.|.+
T Consensus 79 ~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 79 ACMKLEEYQTAKAALEK 95 (356)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 267888888877653
No 474
>PHA02790 Kelch-like protein; Provisional
Probab=78.03 E-value=59 Score=40.77 Aligned_cols=103 Identities=13% Similarity=-0.007 Sum_probs=51.1
Q ss_pred CCCeEEEEEecCcE---E-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 000709 131 KGRHFLVICCVNKA---I-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRR 206 (1339)
Q Consensus 131 dg~~lLasgs~dg~---I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~ 206 (1339)
+|+ +.+.|+.++. + ++|..+.+...+............+.+ ++.+.+.| |.+.+||.++.+....
T Consensus 362 ~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~-------~~~IYv~G---G~~e~ydp~~~~W~~~ 430 (480)
T PHA02790 362 NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF-------GRRLFLVG---RNAEFYCESSNTWTLI 430 (480)
T ss_pred CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE-------CCEEEEEC---CceEEecCCCCcEeEc
Confidence 465 6666664432 2 567776655443332222222223334 56666666 4577899876544322
Q ss_pred EecCCCCCeeEEEEeeeCCCCCEEEEEeCC-----CcEEEEeCCCCC
Q 000709 207 YTGGHKGSISCLMTFMASSGEALLVSGGSD-----GLLILWSADHGQ 248 (1339)
Q Consensus 207 l~~gH~~~V~sl~wf~~spdg~~LaSgS~D-----gtVrVWDl~tg~ 248 (1339)
-.-.+...-.++. --++++.+.|+.+ .+|..||..+++
T Consensus 431 ~~m~~~r~~~~~~----v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 431 DDPIYPRDNPELI----IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCCCccccEEE----EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 1101211112222 1266777887754 345566665543
No 475
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=77.15 E-value=3.5 Score=31.95 Aligned_cols=24 Identities=17% Similarity=0.057 Sum_probs=21.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 1021 FLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 1021 w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
|..||+....+|+++.|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678999999999999999999996
No 476
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=76.95 E-value=7.9 Score=31.67 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCEEEEEEcCCC---CEEEEEeCCCeEEEEECCC
Q 000709 12 DKIVKIQLHPTH---PWLVTADASDHVSVWNWEH 42 (1339)
Q Consensus 12 ~~V~~vafSPdg---~~LaSgs~DGtIrIWDl~t 42 (1339)
+.|.++.|||.. .+|+-+-+.|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 4899988999999999985
No 477
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=76.93 E-value=4.1 Score=35.57 Aligned_cols=52 Identities=13% Similarity=0.061 Sum_probs=40.4
Q ss_pred ecccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000709 963 AMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALK 1042 (1339)
Q Consensus 963 a~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~ 1042 (1339)
.++.|+++.|+++.+.+-... + .+..-|..||..+..+|+++.|.+.|+
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~----P---------------------------~~~~a~~~lg~~~~~~g~~~~A~~~~~ 55 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD----P---------------------------DNPEAWYLLGRILYQQGRYDEALAYYE 55 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS----T---------------------------THHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC----C---------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 567899999999987643320 0 133799999999999999999999999
Q ss_pred HHH
Q 000709 1043 RLA 1045 (1339)
Q Consensus 1043 ~~~ 1045 (1339)
++.
T Consensus 56 ~a~ 58 (65)
T PF13432_consen 56 RAL 58 (65)
T ss_dssp HHH
T ss_pred HHH
Confidence 883
No 478
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=76.77 E-value=13 Score=43.36 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=90.6
Q ss_pred cChhHHHhHHHHhcCCHHHHHHHHHh-c--CchhhHHHHHHHHhCCcchhhcc----cccccCccEEE---------eec
Q 000709 901 LSHPGIRCRCLAAYGDSVSAVKWASR-L--GREHHDDLAQFMLGMGYATEALH----LPGISKRLEFD---------LAM 964 (1339)
Q Consensus 901 l~~~~~~~~~~~~~~~~~~a~~~~~~-i--~~~~~~~~a~fL~~~G~~e~Al~----~~~d~~~~~f~---------La~ 964 (1339)
+....+.||+.+..|.++.+..-+.. - +-.-...+|.|+...+-.|.++. ...+. ....+ +-+
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~-~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQ-AGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS----CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhc-cccccHHHHHHHHHHHH
Confidence 34568899999999999987654433 1 11225678899988666666653 22231 22111 223
Q ss_pred ccccHHHHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 965 QSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 965 ~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
..|+++.|++++... +.. +.---+.+.+|..+++++|++-+++.
T Consensus 114 ~~~~~~~AL~~l~~~------~~l------------------------------E~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSL------------------------------ELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCH------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcc------Ccc------------------------------cHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356777777665321 000 22223467899999999999999999
Q ss_pred HhcCCccccccccchhhhHHHhHhcCC--hhHHHHHHHHHHHc-CCCh---HHHHHH-HHcCCHHHHHHHHHHc
Q 000709 1045 AAAGSVKGALQGHELRGLALRLANHGE--LTRLSGLVTNLISL-GLGR---EAAFSA-AILGDNALMEKAWQDT 1111 (1339)
Q Consensus 1045 ~~~~~~~~~~~~~d~~~l~ll~~~~g~--~~~l~~l~~~a~~~-~~~~---~~af~~-~~lgd~~~~~~~l~~~ 1111 (1339)
+.+.. .+.+..= ..+.+.+..|. ...--...+....+ |..- |.-..| +.+|++++++++|.+.
T Consensus 158 ~~~~e--D~~l~qL--a~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 158 QQIDE--DSILTQL--AEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HCCSC--CHHHHHH--HHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HhcCC--cHHHHHH--HHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76641 1111110 11123333443 44444444443333 3321 122223 3899999999998874
No 479
>PHA03098 kelch-like protein; Provisional
Probab=76.52 E-value=69 Score=40.57 Aligned_cols=146 Identities=12% Similarity=0.124 Sum_probs=69.2
Q ss_pred CCCeEEEEEecCc-----EE-EEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECC------CcEEEEEC
Q 000709 131 KGRHFLVICCVNK-----AI-FLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSD------GVIRVLSM 198 (1339)
Q Consensus 131 dg~~lLasgs~dg-----~I-~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~D------gtIrIWDl 198 (1339)
+++ +++.|+.++ .+ ++|..+.+................+.+ ++.+.+.|+.+ ..+..||.
T Consensus 342 ~~~-lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~-------~~~iYv~GG~~~~~~~~~~v~~yd~ 413 (534)
T PHA03098 342 NNR-IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV-------NNLIYVIGGISKNDELLKTVECFSL 413 (534)
T ss_pred CCE-EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE-------CCEEEEECCcCCCCcccceEEEEeC
Confidence 454 666666542 12 457666554433222211111122222 56777777632 45889998
Q ss_pred CCCeEEEE--EecCCCCCeeEEEEeeeCCCCCEEEEEeCCC--------cEEEEeCCCCCccceecccccccccccceEE
Q 000709 199 ISWKLVRR--YTGGHKGSISCLMTFMASSGEALLVSGGSDG--------LLILWSADHGQDSRELVPKLSLKAHDGGVVA 268 (1339)
Q Consensus 199 ~t~~~i~~--l~~gH~~~V~sl~wf~~spdg~~LaSgS~Dg--------tVrVWDl~tg~~~~~~~~~~~l~gH~~~V~s 268 (1339)
.+.+.... +..++. -.++. ..++.+++.|+.++ .+.+||..+++.... ..+.........
T Consensus 414 ~t~~W~~~~~~p~~r~--~~~~~----~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~----~~~~~~r~~~~~ 483 (534)
T PHA03098 414 NTNKWSKGSPLPISHY--GGCAI----YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL----SSLNFPRINASL 483 (534)
T ss_pred CCCeeeecCCCCcccc--CceEE----EECCEEEEECCccCCCCCcccceEEEecCCCCceeeC----CCCCcccccceE
Confidence 76544321 111111 11221 12566667776432 378888877653221 111111111111
Q ss_pred EEeeccCCCCCEEEEEeCC-----CcEEEEECCCCe
Q 000709 269 VELSRVMGGSPQLITIGAD-----KTLAIWDTVSFK 299 (1339)
Q Consensus 269 vafsp~~~dg~~LaSgs~D-----g~IrIWDl~t~~ 299 (1339)
+.+ ++.+++.||.+ +.|.+||..+.+
T Consensus 484 ~~~-----~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 484 CIF-----NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEE-----CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 222 35666777654 467777776543
No 480
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=75.70 E-value=3.5 Score=49.97 Aligned_cols=102 Identities=18% Similarity=0.088 Sum_probs=74.9
Q ss_pred HHhcCCHHHHHHHHHhc---CchhhHHHHHHHHhCCcchhhcccccccCcc-----------EEEeecccccHHHHHHHH
Q 000709 911 LAAYGDSVSAVKWASRL---GREHHDDLAQFMLGMGYATEALHLPGISKRL-----------EFDLAMQSNDLKRALQCL 976 (1339)
Q Consensus 911 ~~~~~~~~~a~~~~~~i---~~~~~~~~a~fL~~~G~~e~Al~~~~d~~~~-----------~f~La~~~g~l~~a~~~~ 976 (1339)
.-..++++.|.+++.++ .++..-.+|+.+..++.-.+|+++.... -+ .-+..++.++.+.|+++|
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~a-L~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iA 257 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEA-LKENPQDSELLNLQAEFLLSKKKYELALEIA 257 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34568899999999883 3455677888888888887887755432 11 344577888999999999
Q ss_pred HhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
+...+.... . -+-|..|++.+...|+++.|..++.-+
T Consensus 258 k~av~lsP~----------------------------~---f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 258 KKAVELSPS----------------------------E---FETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCch----------------------------h---HHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 864332111 1 169999999999999999999888755
No 481
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=75.70 E-value=13 Score=40.20 Aligned_cols=29 Identities=24% Similarity=0.140 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAA 1047 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~ 1047 (1339)
.-|.+||+...+-|+++.|.+||.++.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 67899999999999999999999999544
No 482
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.58 E-value=1.8e+02 Score=33.97 Aligned_cols=122 Identities=11% Similarity=0.126 Sum_probs=79.4
Q ss_pred CCCeEEEEEeeccccCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEe
Q 000709 164 NKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWS 243 (1339)
Q Consensus 164 ~~~V~~vaf~P~s~Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWD 243 (1339)
...+.++.| +|+.+.|++......-.||=-..|+.++++.-..-+.--.+. +-.+++++++--.++++.++.
T Consensus 85 ~~nvS~LTy-----np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ie---yig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 85 TANVSSLTY-----NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIE---YIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccceee-----CCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeE---EecCCEEEEEehhcceEEEEE
Confidence 445999999 788888888877777777777789999887522223333444 334666777777788898888
Q ss_pred CCCCCccceecc-cccc--ccc-ccceEEEEeeccCCCCCEEEEEeCCCcEEEEECC
Q 000709 244 ADHGQDSRELVP-KLSL--KAH-DGGVVAVELSRVMGGSPQLITIGADKTLAIWDTV 296 (1339)
Q Consensus 244 l~tg~~~~~~~~-~~~l--~gH-~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~ 296 (1339)
+..+..+..... ...+ ..+ +.+.-.++|.| ....|..+=.-+=+.||.+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~---~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP---VDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCC---CCceEEEEEccCCcEEEEEe
Confidence 776543222111 2222 123 66788999999 55666666666666666554
No 483
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.12 E-value=2.1e+02 Score=34.78 Aligned_cols=204 Identities=12% Similarity=0.048 Sum_probs=97.9
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCCeeEEEE-eeeCCCCCE--EEEEeC-C---CcEEEEeCCCCC-c
Q 000709 178 VGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMT-FMASSGEAL--LVSGGS-D---GLLILWSADHGQ-D 249 (1339)
Q Consensus 178 Spdg~~LasGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~w-f~~spdg~~--LaSgS~-D---gtVrVWDl~tg~-~ 249 (1339)
.|...+|+....++-+.+||+. |+.++.+..+. .+.+.. +-|.-+++. |+.++. + .+|++|.+.... .
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr---~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~ 140 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLD-GKELQSLPVGR---PNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE 140 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETT-S-EEEEE-SS----EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE
T ss_pred CcccceEEEEeCCCCEEEEcCC-CcEEEeecCCC---cceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc
Confidence 4566778888888899999998 55666664333 333321 112223433 344432 2 479999876321 1
Q ss_pred cceecc-cccccccccceEEEEeeccCCCC-CEEEEEeCCCcEEEEECC---CC----eeEEEecCCCcccccCCceeEE
Q 000709 250 SRELVP-KLSLKAHDGGVVAVELSRVMGGS-PQLITIGADKTLAIWDTV---SF----KELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 250 ~~~~~~-~~~l~gH~~~V~svafsp~~~dg-~~LaSgs~Dg~IrIWDl~---t~----~~l~~~~~~~~l~~H~~~V~sv 320 (1339)
+..+.. ...+..-...++.+|+.....++ -+.+....+|.+..|.+. .+ +.+++|.. ...+-.+
T Consensus 141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-------~sQ~EGC 213 (381)
T PF02333_consen 141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-------GSQPEGC 213 (381)
T ss_dssp EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--------SS-EEEE
T ss_pred ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-------CCcceEE
Confidence 221100 00111122347778875422234 466778889998888774 23 34555432 2245566
Q ss_pred EeCCCCCEE-EEecCCeEEEccCCcccccccCccccCCCCCCeEEcc-CCcccEEEEEEec---CCCcEEEEEECCCeEE
Q 000709 321 PRAPNLDIL-TCVKDSHIWAIEHPTYSALTRPLCELSSLVPPQVLAH-HKKLRVYCMVAHS---LQPHLVATGTNVGVII 395 (1339)
Q Consensus 321 afspdg~iL-s~s~Dg~LWDi~t~~~~~~~~~l~~~~~~~~~~tl~~-~~~~~I~~la~sp---~~~~lLatGs~DG~Il 395 (1339)
........| .+=++.-||.+.-.........+. ....+ +-...|-.|+.-. ..+++|++.-.++..
T Consensus 214 VVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v--------~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf- 284 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLV--------ASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF- 284 (381)
T ss_dssp EEETTTTEEEEEETTTEEEEEESSCCC-S--EEE--------EEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE-
T ss_pred EEecccCCEEEecCccEEEEEecCCCCCCcceee--------ecccccccccCccceEEEecCCCCeEEEEEcCCCCeE-
Confidence 666654455 444555599876321111111111 01111 1112455565532 235777777777776
Q ss_pred EEecCC
Q 000709 396 SEFDPR 401 (1339)
Q Consensus 396 riWd~~ 401 (1339)
.+|+..
T Consensus 285 ~Vy~r~ 290 (381)
T PF02333_consen 285 AVYDRE 290 (381)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 577644
No 484
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=73.91 E-value=1.6e+02 Score=33.17 Aligned_cols=101 Identities=12% Similarity=0.050 Sum_probs=68.0
Q ss_pred eeeeeCCCCCeEEEEEecCcEE-EEE--ecCCceee---ccccc----cCCCCeEEEEEeeccccCCCCEEEEEECCCcE
Q 000709 124 ASPPPSTKGRHFLVICCVNKAI-FLD--LVTMRGRD---IPKQE----LDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVI 193 (1339)
Q Consensus 124 ~slafspdg~~lLasgs~dg~I-~wD--~~t~~~~~---v~~~~----~h~~~V~~vaf~P~s~Spdg~~LasGs~DgtI 193 (1339)
+.++|+.+.+.+..+-+.+..+ -|| ..++.... +...+ ......-.++. ..+|++.+++-..++|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I-----D~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI-----DTEGNLYVATFNGGTV 235 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE-----ccCCcEEEEEecCcEE
Confidence 4678988888788888888888 565 44543221 10011 11122333444 4578889999999999
Q ss_pred EEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEE
Q 000709 194 RVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVS 232 (1339)
Q Consensus 194 rIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaS 232 (1339)
..+|..+|+.+..+. --...|+|++ +.-++-..+.+
T Consensus 236 ~~~dp~tGK~L~eik-lPt~qitscc--FgGkn~d~~yv 271 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIK-LPTPQITSCC--FGGKNLDILYV 271 (310)
T ss_pred EEECCCCCcEEEEEE-cCCCceEEEE--ecCCCccEEEE
Confidence 999999999999987 5688899997 24554445544
No 485
>PRK14574 hmsH outer membrane protein; Provisional
Probab=73.40 E-value=54 Score=43.91 Aligned_cols=144 Identities=13% Similarity=0.055 Sum_probs=87.3
Q ss_pred HhHHHHhcCCHHHHHHHHHh---cCchh---hHHHHHHHHhCCcchhhccccccc--Cc----cEEE----eecccccHH
Q 000709 907 RCRCLAAYGDSVSAVKWASR---LGREH---HDDLAQFMLGMGYATEALHLPGIS--KR----LEFD----LAMQSNDLK 970 (1339)
Q Consensus 907 ~~~~~~~~~~~~~a~~~~~~---i~~~~---~~~~a~fL~~~G~~e~Al~~~~d~--~~----~~f~----La~~~g~l~ 970 (1339)
+.....-.||++.|...+.. +.+.+ .+.++.++-..|-.++|+.+.+.- ++ ..+- +.+..|+.+
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444456999999998877 23332 457788888889999999854331 11 1111 344679999
Q ss_pred HHHHHHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Q 000709 971 RALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSV 1050 (1339)
Q Consensus 971 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~ 1050 (1339)
.|+++.+.+... +.+.. .-+.-|+......++.+.|.+.++++ ...
T Consensus 120 ~Aiely~kaL~~-dP~n~------------------------------~~l~gLa~~y~~~~q~~eAl~~l~~l---~~~ 165 (822)
T PRK14574 120 QALALWQSSLKK-DPTNP------------------------------DLISGMIMTQADAGRGGVVLKQATEL---AER 165 (822)
T ss_pred HHHHHHHHHHhh-CCCCH------------------------------HHHHHHHHHHhhcCCHHHHHHHHHHh---ccc
Confidence 999998765432 11111 45566788888999999999999988 433
Q ss_pred cccccccchhhhHHHhHh--cCCh-hHHHHHHHHHHHcCCC
Q 000709 1051 KGALQGHELRGLALRLAN--HGEL-TRLSGLVTNLISLGLG 1088 (1339)
Q Consensus 1051 ~~~~~~~d~~~l~ll~~~--~g~~-~~l~~l~~~a~~~~~~ 1088 (1339)
.+. ....+.+.|.. .++. +.|..+-+......+.
T Consensus 166 dp~----~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n 202 (822)
T PRK14574 166 DPT----VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS 202 (822)
T ss_pred Ccc----hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC
Confidence 232 22225555555 3333 4444443334444443
No 486
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.73 E-value=2.8e+02 Score=35.94 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=11.7
Q ss_pred hcCChhHHHHHHHHHHHcCC
Q 000709 1068 NHGELTRLSGLVTNLISLGL 1087 (1339)
Q Consensus 1068 ~~g~~~~l~~l~~~a~~~~~ 1087 (1339)
..++...+..++....+.|.
T Consensus 257 ~~~D~~aal~~l~~Ll~~g~ 276 (624)
T PRK14959 257 AAQDCLGVANVVRELLDRGV 276 (624)
T ss_pred hcCCHHHHHHHHHHHHHcCC
Confidence 45566666666655555553
No 487
>PHA02790 Kelch-like protein; Provisional
Probab=72.45 E-value=70 Score=40.12 Aligned_cols=144 Identities=8% Similarity=-0.000 Sum_probs=70.9
Q ss_pred CCCeEEEEEecCc---EEEEEecCCceeeccccccCCCCeEEEEEeeccccCCCCEEEEEECCC---cEEEEECCCCeEE
Q 000709 131 KGRHFLVICCVNK---AIFLDLVTMRGRDIPKQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDG---VIRVLSMISWKLV 204 (1339)
Q Consensus 131 dg~~lLasgs~dg---~I~wD~~t~~~~~v~~~~~h~~~V~~vaf~P~s~Spdg~~LasGs~Dg---tIrIWDl~t~~~i 204 (1339)
++. +.++|+.++ .-+||..+.+...++...........+.. +|.+.+.|+.++ .+..||.++.+..
T Consensus 318 ~~~-iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~-------~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 318 NNK-LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI-------NNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred CCE-EEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE-------CCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 454 666666432 23667666554444333222222233334 677778877553 4778998765443
Q ss_pred EEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEE
Q 000709 205 RRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITI 284 (1339)
Q Consensus 205 ~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSg 284 (1339)
..-...+...-.++. .-++.+.+.|+ .+.+||..+++... ...+....... +++.. ++.+.+.|
T Consensus 390 ~~~~m~~~r~~~~~~----~~~~~IYv~GG---~~e~ydp~~~~W~~----~~~m~~~r~~~-~~~v~----~~~IYviG 453 (480)
T PHA02790 390 FGPSTYYPHYKSCAL----VFGRRLFLVGR---NAEFYCESSNTWTL----IDDPIYPRDNP-ELIIV----DNKLLLIG 453 (480)
T ss_pred eCCCCCCccccceEE----EECCEEEEECC---ceEEecCCCCcEeE----cCCCCCCcccc-EEEEE----CCEEEEEC
Confidence 321101111111222 22566666664 57789987665321 11222111222 23332 45677777
Q ss_pred eCC-----CcEEEEECCCC
Q 000709 285 GAD-----KTLAIWDTVSF 298 (1339)
Q Consensus 285 s~D-----g~IrIWDl~t~ 298 (1339)
|.+ .++..||..+.
T Consensus 454 G~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CcCCCcccceEEEEECCCC
Confidence 754 34566666543
No 488
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=71.60 E-value=2.1e+02 Score=33.64 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=75.4
Q ss_pred CCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEEeCCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCc
Q 000709 210 GHKGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKT 289 (1339)
Q Consensus 210 gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVWDl~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~ 289 (1339)
.-.+.+..+. .+++|+++++++.-....-||-....-. +. -..-...|.+|.|.| ++.+.+ ....|.
T Consensus 142 ~~~gs~~~~~---r~~dG~~vavs~~G~~~~s~~~G~~~w~----~~--~r~~~~riq~~gf~~---~~~lw~-~~~Gg~ 208 (302)
T PF14870_consen 142 ETSGSINDIT---RSSDGRYVAVSSRGNFYSSWDPGQTTWQ----PH--NRNSSRRIQSMGFSP---DGNLWM-LARGGQ 208 (302)
T ss_dssp S----EEEEE---E-TTS-EEEEETTSSEEEEE-TT-SS-E----EE--E--SSS-EEEEEE-T---TS-EEE-EETTTE
T ss_pred CCcceeEeEE---ECCCCcEEEEECcccEEEEecCCCccce----EE--ccCccceehhceecC---CCCEEE-EeCCcE
Confidence 4556777775 6899999988876666677876432211 11 122356799999999 555555 448899
Q ss_pred EEEEE-CCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEEecCCeEEEccC-CcccccccCccccCCCCCCeEEcc-
Q 000709 290 LAIWD-TVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTCVKDSHIWAIEH-PTYSALTRPLCELSSLVPPQVLAH- 366 (1339)
Q Consensus 290 IrIWD-l~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~s~Dg~LWDi~t-~~~~~~~~~l~~~~~~~~~~tl~~- 366 (1339)
|++=+ ....+.... +........-.+..++|.+++.+.+++..|.|+.-.. +.. -.....
T Consensus 209 ~~~s~~~~~~~~w~~--~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGkt---------------W~~~~~~ 271 (302)
T PF14870_consen 209 IQFSDDPDDGETWSE--PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKT---------------WQKDRVG 271 (302)
T ss_dssp EEEEE-TTEEEEE-----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS----------------EE-GGG
T ss_pred EEEccCCCCcccccc--ccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCcc---------------ceECccc
Confidence 88877 233332222 1111222334577899999988888877777654332 210 000000
Q ss_pred -CCcccEEEEEEecCCCcEEEEEECCCeEE
Q 000709 367 -HKKLRVYCMVAHSLQPHLVATGTNVGVII 395 (1339)
Q Consensus 367 -~~~~~I~~la~sp~~~~lLatGs~DG~Il 395 (1339)
+-...++.|.|.+. .. -++-+.+|+++
T Consensus 272 ~~~~~n~~~i~f~~~-~~-gf~lG~~G~ll 299 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNP-DK-GFVLGQDGVLL 299 (302)
T ss_dssp TTSSS---EEEEEET-TE-EEEE-STTEEE
T ss_pred cCCCCceEEEEEcCC-Cc-eEEECCCcEEE
Confidence 00114777888762 33 45556788876
No 489
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=71.36 E-value=1.3e+02 Score=31.04 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=71.2
Q ss_pred cCCCCEEEEEECCCcEEEEECCCC--------eEEEEEecCCCCCeeEEEEeee--CCCCCEEEEEeCCCcEEEEeCCCC
Q 000709 178 VGDVPLVAFGSSDGVIRVLSMISW--------KLVRRYTGGHKGSISCLMTFMA--SSGEALLVSGGSDGLLILWSADHG 247 (1339)
Q Consensus 178 Spdg~~LasGs~DgtIrIWDl~t~--------~~i~~l~~gH~~~V~sl~wf~~--spdg~~LaSgS~DgtVrVWDl~tg 247 (1339)
....+-|+.++.-|.|.|++.... ..+..+ .-...|++++.-.+ ..+...|+.|+ ...+..||+...
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 445567888889999999987632 233444 35677888863333 23455677665 557899999877
Q ss_pred CccceecccccccccccceEEEEeeccCCCCCEEEEEeCCCcEEEEECCCCee
Q 000709 248 QDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKE 300 (1339)
Q Consensus 248 ~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs~Dg~IrIWDl~t~~~ 300 (1339)
..+. ++.-.++|+++.+-...+...-++..+.+..|.-||....+.
T Consensus 84 ~d~F-------yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 84 SDLF-------YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEI 129 (136)
T ss_pred chhh-------hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEE
Confidence 6543 244567899988865322223444444467777777664443
No 490
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=71.12 E-value=9.8 Score=48.37 Aligned_cols=167 Identities=16% Similarity=0.077 Sum_probs=114.5
Q ss_pred HHHhHHHHhcCCHHHHHHHHHh-c--Cch--hhHHHHHHHHhCCcchhhcccccccCccE----E-EeecccccHHHHHH
Q 000709 905 GIRCRCLAAYGDSVSAVKWASR-L--GRE--HHDDLAQFMLGMGYATEALHLPGISKRLE----F-DLAMQSNDLKRALQ 974 (1339)
Q Consensus 905 ~~~~~~~~~~~~~~~a~~~~~~-i--~~~--~~~~~a~fL~~~G~~e~Al~~~~d~~~~~----f-~La~~~g~l~~a~~ 974 (1339)
.+.|=++ -|+..+|.++..+ + |+. .|..+..|+...-++|.|.++..+ ...| | -+.+..++++.|.+
T Consensus 430 vi~CY~~--lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~-~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 430 VILCYLL--LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY-ISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHH--hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh-hhHHHHHhhccccccchhHHHHHH
Confidence 4444443 3688888887776 2 233 367788999999999999999988 3555 2 23445589999888
Q ss_pred HHHhccCCCccCCCCCCCCcccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccc
Q 000709 975 CLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGAL 1054 (1339)
Q Consensus 975 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~ 1054 (1339)
.... +-.-...+. .-|-.+|-.|+..++.+.|.+||.++-.- .|..+.
T Consensus 507 hle~-sl~~nplq~------------------------------~~wf~~G~~ALqlek~q~av~aF~rcvtL-~Pd~~e 554 (777)
T KOG1128|consen 507 HLER-SLEINPLQL------------------------------GTWFGLGCAALQLEKEQAAVKAFHRCVTL-EPDNAE 554 (777)
T ss_pred HHHH-HhhcCccch------------------------------hHHHhccHHHHHHhhhHHHHHHHHHHhhc-CCCchh
Confidence 8752 110011111 68999999999999999999999999433 233333
Q ss_pred cccchhhhHHHhHhcCChhHHHHHHHHHHHcCCChHHH----HH--HHHcCCHHHHHHHHHH
Q 000709 1055 QGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAA----FS--AAILGDNALMEKAWQD 1110 (1339)
Q Consensus 1055 ~~~d~~~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~a----f~--~~~lgd~~~~~~~l~~ 1110 (1339)
-+..|+=.|...|.+.+-....+.|.+.+.. +.- |. +--.|..++++++..+
T Consensus 555 ---aWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 555 ---AWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred ---hhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHH
Confidence 6778899999999999999998888886632 211 11 2255666666665553
No 491
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=71.02 E-value=1.5e+02 Score=35.82 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCeEEEEEeeccccCCCCEEEEEE-----------CCC-cEEEEECCC--Ce--EEEEEecCCCCCeeEEEEeeeCCCCC
Q 000709 165 KSLVCMEFLSRSAVGDVPLVAFGS-----------SDG-VIRVLSMIS--WK--LVRRYTGGHKGSISCLMTFMASSGEA 228 (1339)
Q Consensus 165 ~~V~~vaf~P~s~Spdg~~LasGs-----------~Dg-tIrIWDl~t--~~--~i~~l~~gH~~~V~sl~wf~~spdg~ 228 (1339)
..+..|+| .++|+++++-. ..+ .|.+++-.. ++ ....+. ..-.....++ +.+++
T Consensus 14 ~~P~~ia~-----d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~---~~~~G- 83 (367)
T TIGR02604 14 RNPIAVCF-----DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLA---VAVGG- 83 (367)
T ss_pred CCCceeeE-----CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCcccee---EecCC-
Confidence 45677888 77888776643 123 677776432 22 223333 2223446665 56677
Q ss_pred EEEEEeCCCcEEEEeCCCCC-c---cceeccccccc--ccccceEEEEeeccCCCCCEEEEEeCC---------------
Q 000709 229 LLVSGGSDGLLILWSADHGQ-D---SRELVPKLSLK--AHDGGVVAVELSRVMGGSPQLITIGAD--------------- 287 (1339)
Q Consensus 229 ~LaSgS~DgtVrVWDl~tg~-~---~~~~~~~~~l~--gH~~~V~svafsp~~~dg~~LaSgs~D--------------- 287 (1339)
++++ +.+...++.|..... . ...+...+... .+....+.+.|.| |+.+.++-+..
T Consensus 84 lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp---DG~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 84 VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP---DGWLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC---CCCEEEecccCCCceeccCCCccCcc
Confidence 5554 444333344543221 1 11111111111 1234578899999 77766655521
Q ss_pred ----CcEEEEECCCCeeEEEecCCCcccccCCceeEEEeCCCCCEEEE
Q 000709 288 ----KTLAIWDTVSFKELRRIKPVPKLACHSVASWCHPRAPNLDILTC 331 (1339)
Q Consensus 288 ----g~IrIWDl~t~~~l~~~~~~~~l~~H~~~V~svafspdg~iLs~ 331 (1339)
+.|.-+|..+++. ..+ ..++ .+.+.++|+++|.++++
T Consensus 160 ~~~~g~i~r~~pdg~~~-e~~-----a~G~-rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGKL-RVV-----AHGF-QNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cccCceEEEEecCCCeE-EEE-----ecCc-CCCccceECCCCCEEEE
Confidence 3344444443332 221 1232 34457888888887654
No 492
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.70 E-value=28 Score=39.44 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=78.4
Q ss_pred HhHHHHhcCCHHHHHHHHHh----cCchhh--HHHHHHHHhCCcchhhcccc----cccCccEEEeecccccHHHHHHHH
Q 000709 907 RCRCLAAYGDSVSAVKWASR----LGREHH--DDLAQFMLGMGYATEALHLP----GISKRLEFDLAMQSNDLKRALQCL 976 (1339)
Q Consensus 907 ~~~~~~~~~~~~~a~~~~~~----i~~~~~--~~~a~fL~~~G~~e~Al~~~----~d~~~~~f~La~~~g~l~~a~~~~ 976 (1339)
-|=.|+-+|+.+.|.+|+.+ .|.+++ ---|-+||..|..++|+++. .|+|.+ -++. ++=+.++
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~---~v~~----KRKlAil 130 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD---TVIR----KRKLAIL 130 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch---hHHH----HHHHHHH
Confidence 35567788999999998876 444432 23467899999999999743 332111 1111 1222222
Q ss_pred HhccCCCccCCCCCCCCcccccccccccchhh---hhhhhhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcccc
Q 000709 977 ITMSNSRDIGQDHPGLDLNDILTLTTKKENIV---EAVQGIVKFAKEFLDLIDAADATGQANIAREALKRLAAAGSVKGA 1053 (1339)
Q Consensus 977 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~ 1053 (1339)
+.+... .|-|. +-+..-...++-|+.|++.+++-|+|+-|.-||...-=....+..
T Consensus 131 ka~GK~---------------------l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l 189 (289)
T KOG3060|consen 131 KAQGKN---------------------LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL 189 (289)
T ss_pred HHcCCc---------------------HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH
Confidence 211110 01111 111122235589999999999999999999999998322211111
Q ss_pred ccccchhhhHHHhHhcCChhHH
Q 000709 1054 LQGHELRGLALRLANHGELTRL 1075 (1339)
Q Consensus 1054 ~~~~d~~~l~ll~~~~g~~~~l 1075 (1339)
=|.+|+-++...|-.+.+
T Consensus 190 ----~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 190 ----YFQRLAEVLYTQGGAENL 207 (289)
T ss_pred ----HHHHHHHHHHHHhhHHHH
Confidence 245555555555544443
No 493
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=70.62 E-value=2e+02 Score=32.84 Aligned_cols=156 Identities=11% Similarity=-0.009 Sum_probs=87.1
Q ss_pred CeEEEEEeeccccCCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCCeeEEEEeeeCCCCCEEEEEeCCCcEEEE
Q 000709 166 SLVCMEFLSRSAVGDVPLVAFGS---SDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 166 ~V~~vaf~P~s~Spdg~~LasGs---~DgtIrIWDl~t~~~i~~l~~gH~~~V~sl~wf~~spdg~~LaSgS~DgtVrVW 242 (1339)
.+...++ ++++..++... ....++++.. +........+. .+..-. +++++...+....+...+++
T Consensus 25 ~~~s~Av-----S~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS---~d~~g~~W~v~~~~~~~~~~ 92 (253)
T PF10647_consen 25 DVTSPAV-----SPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPS---WDPDGWVWTVDDGSGGVRVV 92 (253)
T ss_pred cccceEE-----CCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--cccccc---ccCCCCEEEEEcCCCceEEE
Confidence 6778888 78898877665 3334555543 33333322122 455454 57777777777777777777
Q ss_pred e-CCCCCccceecccccccccccceEEEEeeccCCCCCEEEEEe---CCCcEEEEECC---CCeeEEEecCCCcccccCC
Q 000709 243 S-ADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIG---ADKTLAIWDTV---SFKELRRIKPVPKLACHSV 315 (1339)
Q Consensus 243 D-l~tg~~~~~~~~~~~l~gH~~~V~svafsp~~~dg~~LaSgs---~Dg~IrIWDl~---t~~~l~~~~~~~~l~~H~~ 315 (1339)
. ...+..... ......-...|..+.++| |+..++... .++.|.+=-+. .+.......+.........
T Consensus 93 ~~~~~g~~~~~---~v~~~~~~~~I~~l~vSp---DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 93 RDSASGTGEPV---EVDWPGLRGRITALRVSP---DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EecCCCcceeE---EecccccCCceEEEEECC---CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccC
Confidence 4 333332211 001111112799999999 787776555 35777766543 2311111112222234456
Q ss_pred ceeEEEeCCCCCEEEEe--cCCeEEE
Q 000709 316 ASWCHPRAPNLDILTCV--KDSHIWA 339 (1339)
Q Consensus 316 ~V~svafspdg~iLs~s--~Dg~LWD 339 (1339)
.+..+.|.+++.++..+ .+..+|.
T Consensus 167 ~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred cceeeeecCCCEEEEEeCCCCCceeE
Confidence 78899999999876433 3344555
No 494
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.56 E-value=18 Score=43.90 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAG 1048 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~ 1048 (1339)
..|..||+-..+.++.+.|++||+|+-.++
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 799999999999999999999999997776
No 495
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=70.46 E-value=30 Score=40.90 Aligned_cols=96 Identities=13% Similarity=-0.048 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccc-ccccc---chhhhHHHhHhcCChhHHHHH---HHHHHHcCC----
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKG-ALQGH---ELRGLALRLANHGELTRLSGL---VTNLISLGL---- 1087 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~-~~~~~---d~~~l~ll~~~~g~~~~l~~l---~~~a~~~~~---- 1087 (1339)
..|+.++..++.+|+++.|..+|+++ ..... +.-.. +.-.++..+-..|........ +........
T Consensus 187 ~~~~~la~~~~~~G~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 187 HNWWHLALFYLERGDYEAALAIYDTH---IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH---hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 47889999999999999999999997 21211 11111 222445555556654444443 333322211
Q ss_pred -ChHHHHH--HHHcCCHHHHHHHHHHcCCchHH
Q 000709 1088 -GREAAFS--AAILGDNALMEKAWQDTGMLAEA 1117 (1339)
Q Consensus 1088 -~~~~af~--~~~lgd~~~~~~~l~~~~~~~~A 1117 (1339)
.+...++ +...|+.+++.++|.......++
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 1111112 13788899998888776555544
No 496
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=69.70 E-value=8.2 Score=28.89 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRL 1044 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~ 1044 (1339)
+-|..+|......|+++.|.++|+++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999999998
No 497
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.58 E-value=21 Score=35.35 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=62.4
Q ss_pred hhHHHhHhcCChhHHHHHHHHHHHcCCChHHHHHHHHcCCHHHHHHHHHHcCCchHHHHHHHHhCCCChHHHHHHHHHHH
Q 000709 1061 GLALRLANHGELTRLSGLVTNLISLGLGREAAFSAAILGDNALMEKAWQDTGMLAEAVLHAHAHGRPSLKNLVEAWNKML 1140 (1339)
Q Consensus 1061 ~l~ll~~~~g~~~~l~~l~~~a~~~~~~~~~af~~~~lgd~~~~~~~l~~~~~~~~A~~~A~t~~~~~~~~~~~~w~~~l 1140 (1339)
.|+.+|..+ +...|..+ ....+. =|++++++.|.+.|+|.|=+.|=++.| .-.+.++.|++.-
T Consensus 4 aLlk~Yl~~-~~~~l~~l---lr~~N~-----------C~~~~~e~~L~~~~~~~eL~~lY~~kg--~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 4 ALLKCYLET-NPSLLGPL---LRLPNY-----------CDLEEVEEVLKEHGKYQELVDLYQGKG--LHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHh-CHHHHHHH---HccCCc-----------CCHHHHHHHHHHcCCHHHHHHHHHccC--ccHHHHHHHHHHh
Confidence 577788888 77777776 333322 289999999999999998887766555 5689999999876
Q ss_pred h---hhcCCCCcchhhHH-HHHHhccCCCCc
Q 000709 1141 Q---KEVDHTPTAKTDAA-AAFLASLEEPKL 1167 (1339)
Q Consensus 1141 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~ 1167 (1339)
. ......+..++... ..+|..|....+
T Consensus 67 ~~~~~~~~~~~~~~~~~~iv~yL~~L~~~~~ 97 (108)
T PF10366_consen 67 DEEDSDEEDPFLSGVKETIVQYLQKLGNEDL 97 (108)
T ss_pred cccccccccccccCchhHHHHHHHhCChhhh
Confidence 6 22333444444444 678888765444
No 498
>PHA03247 large tegument protein UL36; Provisional
Probab=69.18 E-value=1.1e+02 Score=44.78 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=6.0
Q ss_pred hhHHHHHHhcc
Q 000709 1152 TDAAAAFLASL 1162 (1339)
Q Consensus 1152 ~~~~~~~~~~~ 1162 (1339)
..++..||.-|
T Consensus 1176 ~~~~~sFL~~l 1186 (3151)
T PHA03247 1176 PACPLAFLVAL 1186 (3151)
T ss_pred ccchHHHHHHH
Confidence 44556666544
No 499
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=69.17 E-value=43 Score=39.60 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCccccccccchhhhHHHhHhcCChhHHHHHHHHHH
Q 000709 1019 KEFLDLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLI 1083 (1339)
Q Consensus 1019 ~~w~~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~l~ll~~~~g~~~~l~~l~~~a~ 1083 (1339)
.-+..||.....+|+++.|+.+|++.-........+..+.+-.|.++|...|+.++...+.+.+.
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 45677788888888888888888877332100011111222346677777777777777766654
No 500
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=69.06 E-value=8.8 Score=47.14 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=8.2
Q ss_pred cCChhHHHHHHHHHHHcC
Q 000709 1069 HGELTRLSGLVTNLISLG 1086 (1339)
Q Consensus 1069 ~g~~~~l~~l~~~a~~~~ 1086 (1339)
.|+---|+-|-+....+.
T Consensus 165 ~gE~~PLKTlSe~SlqkE 182 (574)
T PF07462_consen 165 IGEPFPLKTLSEESLQKE 182 (574)
T ss_pred cCCCcccccccHHHHhhh
Confidence 344444555444444433
Done!