Query 000709
Match_columns 1339
No_of_seqs 811 out of 4072
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 21:11:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/000709.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_18-21//hhsearch_pdb/000709hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 1.0 1 1 666.7 80.1 771 3-1145 5-798 (814)
2 1nr0_A Actin interacting prote 1.0 1 1 342.5 55.3 333 9-405 16-358 (611)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 334.7 56.6 402 4-527 608-1055(1249)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 327.5 47.7 336 4-403 650-1035(1249)
5 1nr0_A Actin interacting prote 1.0 1 1 324.2 57.5 434 4-535 52-510 (611)
6 2ymu_A WD-40 repeat protein; u 1.0 1 1 322.2 62.5 320 4-402 9-334 (577)
7 1vyh_C Platelet-activating fac 1.0 1 1 315.8 40.4 289 4-401 101-410 (410)
8 2ymu_A WD-40 repeat protein; u 1.0 1 1 313.8 55.3 320 3-400 49-373 (577)
9 3mkq_A Coatomer beta'-subunit; 1.0 1 1 310.4 57.7 253 3-299 47-304 (814)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 301.1 44.3 251 3-295 9-310 (902)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=666.71 Aligned_cols=771 Identities=17% Similarity=0.222 Sum_probs=487.5
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCC
Q ss_conf 36792689998899999389999999968990999977988099998136755327753--5666368402355798530
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 3 rl~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
..+.|.+|.+.|++++|||++++|++++.||.|+|||+.+++.+..+. .|...+.++. ++++.|++++
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--------- 74 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGS--------- 74 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEE---------
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEEECCCCEEEEEE---------
T ss_conf 000450589856899988999989999479989999899991677873-3899688999968999899992---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEECCCCEEECCC
Q ss_conf 02598437998709929999867764113356510246888866421079999299999569499-99910896000241
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I-~wD~~t~~~~~i~~ 159 (1339)
.|+.|++|++.+++.. ....+| ...|.+++|+|+++ ++++++.|+.+ +||+.++. .....
T Consensus 75 ------------~dg~i~vw~~~~~~~~----~~~~~~-~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~-~~~~~ 135 (814)
T 3mkq_A 75 ------------DDFRIRVFNYNTGEKV----VDFEAH-PDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNW-ALEQT 135 (814)
T ss_dssp ------------TTSEEEEEETTTCCEE----EEEECC-SSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTS-EEEEE
T ss_pred ------------CCCEEEEEECCCCCEE----EEEECC-CCCEEEEEEECCCC-EEEEECCCCEEEEEECCCCC-EEEEE
T ss_conf ------------8994999989999587----998168-99789999958999-89999289989999899995-48799
Q ss_pred CCCCCCCEEEEEEEECCCCC-CCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECC--CCCEEEEEECC
Q ss_conf 12489983799991123269-9999999988991999977998599999068887805999866289--99999999489
Q 000709 160 QELDNKSLVCMEFLSRSAVG-DVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASS--GEALLVSGGSD 236 (1339)
Q Consensus 160 ~~~h~~~V~~Iaf~P~s~Sp-dg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~sp--dg~~LaSgS~D 236 (1339)
...|...|.++.| +| ++..+++++.||.|++||+.++.....+...+...+.+++ +++ ++.++++++.|
T Consensus 136 ~~~~~~~v~~~~~-----~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~l~~~~~d 207 (814)
T 3mkq_A 136 FEGHEHFVMCVAF-----NPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD---YYPLPDKPYMITASDD 207 (814)
T ss_dssp EECCSSCEEEEEE-----ETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEE---ECCSTTCCEEEEECTT
T ss_pred ECCCCCCEEEEEE-----ECCCCCEEEEEECCCEEEEEECCCCCCEEEEECCCCCCEEEEE---EEECCCCCEEEEEECC
T ss_conf 8379986889999-----7699999999948894999989999610698358889779999---9977999899999389
Q ss_pred CCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCC
Q ss_conf 91999958999852000142012235666599995102799999999969991999989997268884687854566776
Q 000709 237 GLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVA 316 (1339)
Q Consensus 237 gtIrVWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~~~l~~H~~~ 316 (1339)
+.|++||+.++..... +.+|...|.+++|+| ++.++++++.||.|++||+.+++.... +..|...
T Consensus 208 g~i~~~d~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~l~~~~~dg~v~vwd~~~~~~~~~------~~~~~~~ 272 (814)
T 3mkq_A 208 LTIKIWDYQTKSCVAT------LEGHMSNVSFAVFHP---TLPIIISGSEDGTLKIWNSSTYKVEKT------LNVGLER 272 (814)
T ss_dssp SEEEEEETTTTEEEEE------EECCSSCEEEEEECS---SSSEEEEEETTSCEEEEETTTCSEEEE------ECCSSSS
T ss_pred CEEEEEECCCCCEEEE------ECCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEE------EECCCCC
T ss_conf 9799999999918899------847888878999859---999999990899699998999947778------4068886
Q ss_pred EEEEEECCCCC--EEEEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCC
Q ss_conf 04987479998--999841972--99835786455666743557888982770588625899999039991999997899
Q 000709 317 SWCHPRAPNLD--ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVG 392 (1339)
Q Consensus 317 V~siafspdg~--iLs~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG 392 (1339)
+++++|+|++. +++++.++. +|++... ...+.++| ++.++++++.+.
T Consensus 273 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~-~g~~~~~~~~~~ 323 (814)
T 3mkq_A 273 SWCIATHPTGRKNYIASGFDNGFTVLSLGND----------------------------EPTLSLDP-VGKLVWSGGKNA 323 (814)
T ss_dssp EEEEEECTTCGGGEEEEEETTEEEEEECSCC----------------------------SCCEEECS-SSEEEEECCTTS
T ss_pred EEEEEECCCCCCEEEEEEECCCEEEEECCCC----------------------------CCEEEECC-CCCEEEECCCCC
T ss_conf 7999992499950999990798799976799----------------------------74167779-987899776366
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
Q ss_conf 49999458999975566899999985189996591999986404688888888852256886348894146787411333
Q 000709 393 VIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQIKQIKKHI 472 (1339)
Q Consensus 393 ~IlriWd~~~~p~i~~l~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~l~~~~~~S~~G~~~~~~~~~l~v~~~~r~i 472 (1339)
... .+.......... ...+.... ...+..
T Consensus 324 ~~~-------------------------------~~~~~~~~~~~~-----------~~~~~~~~---------~~~~~~ 352 (814)
T 3mkq_A 324 AAS-------------------------------DIFTAVIRGNEE-----------VEQDEPLS---------LQTKEL 352 (814)
T ss_dssp CTT-------------------------------CEEEEECCSCCC-----------CCSSSCBC---------CCCEEE
T ss_pred CCE-------------------------------EEEEEECCCCCC-----------CCCCCCCE---------EEEECC
T ss_conf 411-------------------------------246653046555-----------55676201---------465117
Q ss_pred CCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCH
Q ss_conf 45678999518999389998999979999799999489514305753399862699818998336888867788899814
Q 000709 473 STPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVDSGSARLLAWDTCRDRFAILESALTPRLPIIPKGGSSR 552 (1339)
Q Consensus 473 ~t~~~~e~~s~l~~SpdGkylaV~~~~~g~~~Iy~i~~~~~i~~Gs~~~~aW~~~~~~fAvl~~~~~~~i~~~~k~~~~~ 552 (1339)
. ..... ...+.+||+|+++++.. ++.+.+|++..+.....+.+..++|++++..+|+....-
T Consensus 353 ~-~~~~~-~~~~~~spdg~~la~~~--~~~~~i~~~~~~~~~~~~~i~~~~~spdg~~la~~~~~g-------------- 414 (814)
T 3mkq_A 353 G-SVDVF-PQSLAHSPNGRFVTVVG--DGEYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDETG-------------- 414 (814)
T ss_dssp C-CCSSC-CSEEEECTTSSEEEEEE--TTEEEEEETTTTEEEEEEECSEEEECTTSSCEEEECTTC--------------
T ss_pred C-CCCCC-CCEEEECCCCCEEEEEC--CCEEEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCC--------------
T ss_conf 8-87657-74068999999899942--988999987454456799547999947998599996898--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 58999999999999999873012335665214787412576407999880110035122167603664343100000112
Q 000709 553 KAKEAAAAAAAAQAAAASAASSATVQARILLDDGTSNILMRSIGGSSEPVIGLHGGALLGVAYRTSRRISPIAATAISTI 632 (1339)
Q Consensus 553 k~ke~~~aaa~~~aaa~aaa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~llgv~~~~~~~~~~~~~~~~~~~ 632 (1339)
++.+-..+......+ ....+...+++++.|+.+.
T Consensus 415 -----------------------~v~l~~~~~~~~~~v-----~~~~~s~dg~~~~~l~~~~------------------ 448 (814)
T 3mkq_A 415 -----------------------QIKYYKNFKEVTSWS-----VPMHSAIDRLFSGALLGVK------------------ 448 (814)
T ss_dssp -----------------------CEEEEETTEECTTCC-----CCCSSCCCEEECSSSEEEE------------------
T ss_pred -----------------------CEEEEECCCCCCCEE-----ECCCCCCCCEECCEEEEEE------------------
T ss_conf -----------------------399997777752439-----7378675523654699996------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEEE------EEEE
Q ss_conf 3588778888898875324789887899887799847993235532013679998467987996599999------5007
Q 000709 633 QSMPLSGFGSSGLSSFTTFDDGFSSQKSPAEAAPQNFQLYSWETFQPVGGLLPQPEWTAWDQTVEYCAFA------YQHY 706 (1339)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ydw~~~~~v~~~~~~~~~v~w~~~~~~~a~~------~~~~ 706 (1339)
....+.+||+++.+.++.+.....++.|++++.++++. +++.
T Consensus 449 --------------------------------~d~~v~~~d~~~~~~~~~~~~~~~~v~~s~dg~~la~~~~~~~~~~~~ 496 (814)
T 3mkq_A 449 --------------------------------SDGFVYFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEAS 496 (814)
T ss_dssp --------------------------------ETTEEEEECTTTCCEEEEESSCEEEEEECTTSSEEEEEECCCSSCSCS
T ss_pred --------------------------------CCCEEEEEECCCCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCCCE
T ss_conf --------------------------------699899999876959999735888799969999999998676667742
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 99960675332233212234445201110268847996147754266421234456778987887662101120231000
Q 000709 707 IVISSLCPQYRYLGDVAIPYATGAVWHRRQLFVVTPTTIECVFVDAGVAAIDVETMKMKEEMKLKEVQSRAVAEHGELAL 786 (1339)
Q Consensus 707 i~i~~~~~~~~~~~~~~~~~~~s~~w~~~~~f~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1339)
++++.++....... +.++. +.+..+++-.|.... + ....++++.|.+++.+
T Consensus 497 ~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~-------------~---~~~~i~s~~w~~~~~i 547 (814)
T 3mkq_A 497 GYTLLFNKDAYLEA------ANNGN-------IDDSEGVDEAFDVLY-------------E---LSESITSGKWVGDVFI 547 (814)
T ss_dssp EEEEEECHHHHHHH------HHHTC-------CBTTTBCTTTEEEEE-------------E---ECSCCSEEEEETTEEE
T ss_pred EEEEEECHHHHHHH------HHCCC-------CCCCCCHHHHEEEEE-------------E---ECCEEEEEEEECCEEE
T ss_conf 89999546886666------64168-------762125022213645-------------7---6427876598088899
Q ss_pred HHHCCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECC
Q ss_conf 01301101221000149970111322001345789974347877433599999941000112210332178612477506
Q 000709 787 IAVESSQTAAQDRIKLRPPMLQVVRLASFQHAASVPPFLTMPKQTKVEGDDSMMPKDIEERKVNEIAVGGGGVAVAVTRF 866 (1339)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~l 866 (1339)
|+ ...+++.|+.+|+.+++.++
T Consensus 548 ~~----------------------------------------------------------t~~~~~~~~~~~~~~~~~~~ 569 (814)
T 3mkq_A 548 FT----------------------------------------------------------TATNRLNYFVGGKTYNLAHY 569 (814)
T ss_dssp EE----------------------------------------------------------CTTSEEEEEETTEEEEEEEC
T ss_pred EE----------------------------------------------------------CCCCEEEEEECCEEEEEEEC
T ss_conf 97----------------------------------------------------------68870899969866899998
Q ss_pred CCCCCCCCCCEEEEEE--ECCEEEEECCCCCEEEEECCHHHHHHHHHHHCCCHHHHHH-HHHHCC-CHHHHHHHHHHHHC
Q ss_conf 8888899964699899--5868999907884899956936788477894599899999-997239-11467899999917
Q 000709 867 PTEQKRPIGPLVVVGV--KDGVLWLIDRYMCAHALSLSHPGIRCRCLAAYGDSVSAVK-WASRLG-REHHDDLAQFMLGM 942 (1339)
Q Consensus 867 ~~~~~~~~~~~~llg~--~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~d~~~a~~-~~~~i~-~~~~~~~a~fL~~~ 942 (1339)
+. ++|++|| .++++|++|++.++..+.|+..+++|++++.+++++.|.+ +++.|+ +.+++++++||+++
T Consensus 570 ~~-------~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~~~~~~~l~~~ 642 (814)
T 3mkq_A 570 TK-------EMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQ 642 (814)
T ss_dssp SS-------CCEEEEEEGGGTEEEEECTTCCEEEEECCHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHHHHHHHHHHHT
T ss_pred CC-------CEEEEEEEECCCEEEEECCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 96-------67999998329999999288887999989099999699870799999988874288467899999999868
Q ss_pred CCCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 96023113455567667873301263999999988604887569999998732100001111002465510023388999
Q 000709 943 GYATEALHLPGISKRLEFDLAMQSNDLKRALQCLITMSNSRDIGQDHPGLDLNDILTLTTKKENIVEAVQGIVKFAKEFL 1022 (1339)
Q Consensus 943 G~~e~AL~~~~d~~~~kf~La~~~g~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 1022 (1339)
|++|+||++++| +.++|++++++|+++.|+++++.+++ + .+|+
T Consensus 643 ~~~~~a~~~~~~-~~~~f~~~l~~~~~~~A~~~~~~~~~------~------------------------------~~W~ 685 (814)
T 3mkq_A 643 EYYEEALNISPD-QDQKFELALKVGQLTLARDLLTDESA------E------------------------------MKWR 685 (814)
T ss_dssp TCHHHHHHHCCC-HHHHHHHHHHHTCHHHHHHHHTTCCC------H------------------------------HHHH
T ss_pred CCHHHHEECCCC-CCHHEEHHHHCCCHHHHHHHHHHHCC------H------------------------------HHHH
T ss_conf 986896052789-31425021450999999999986176------7------------------------------6899
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHH-HCCCH
Q ss_conf 99999998199899999999988529853222212202467886713994689989999998299768999999-90999
Q 000709 1023 DLIDAADATGQANIAREALKRLAAAGSVKGALQGHELRGLALRLANHGELTRLSGLVTNLISLGLGREAAFSAA-ILGDN 1101 (1339)
Q Consensus 1023 ~l~~~al~~g~~~~a~~~~~~~~~~~~~~~~~~~~d~~~L~lly~~~g~~~~l~~l~~~a~~~~~~~~~af~~~-~lgd~ 1101 (1339)
+||++|+.+|++++|++||+++ + |+++|.+||...|+.++|.+|+++++..|+. +.||.++ ++||+
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~---~---------d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~-~~A~~~~~~~g~~ 752 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNA---H---------DLESLFLLHSSFNNKEGLVTLAKDAETTGKF-NLAFNAYWIAGDI 752 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH---T---------CHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHC---C---------CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHCCCH
T ss_conf 9999999849989999999870---2---------7135589987729999999999999985866-7999999880999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCC
Q ss_conf 999999998599169999999709997--57899999999852117
Q 000709 1102 ALMEKAWQDTGMLAEAVLHAHAHGRPS--LKNLVEAWNKMLQKEVD 1145 (1339)
Q Consensus 1102 ~~~~~~l~~t~~~~~A~~~A~t~~~~~--~~~~~~~w~~~l~~~~~ 1145 (1339)
++|+++|++++|+++|+++|++|+|+. +++++++|++.|....+
T Consensus 753 ~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~ 798 (814)
T 3mkq_A 753 QGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGK 798 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999986994789999987099757889999999999876164
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=342.49 Aligned_cols=333 Identities=14% Similarity=0.158 Sum_probs=251.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 89998899999389999999968990999977988099998136755327753--5666368402355798530025984
Q 000709 9 PTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEAMRGGS 86 (1339)
Q Consensus 9 gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~l~~g~ 86 (1339)
.+.+.+.+++|+|+|++|++++ ++.|++||+.++..+..+. +|.+.+.++. |++++|++++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~--------------- 78 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGD--------------- 78 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEE---------------
T ss_pred CCCCCEEEEEECCCCCEEEECC-CCEEEEECCCCCCCCEEEC-CCCCCEEEEEECCCCCEEEEEE---------------
T ss_conf 4068236976679999799679-9979994578724273765-8998659999999996899994---------------
Q ss_pred EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCC----EEEEEECCCCEEECCCCCC
Q ss_conf 379987099299998677641133565102468888664210799992999995694----9999910896000241124
Q 000709 87 VKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNK----AIFLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 87 V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg----~I~wD~~t~~~~~i~~~~~ 162 (1339)
.|+.|++||+..++... .....+| ...|.+++|+|+++ .+++++.+. .+ +.+..+.. ...+..
T Consensus 79 ------~d~~v~lWd~~~~~~~~--~~~~~~~-~~~v~~v~fs~dg~-~l~~~~~~~~~~~~v-~~wd~~~~--~~~l~g 145 (611)
T 1nr0_A 79 ------VHGNVRIWDTTQTTHIL--KTTIPVF-SGPVKDISWDSESK-RIAAVGEGRERFGHV-FLFDTGTS--NGNLTG 145 (611)
T ss_dssp ------TTSEEEEEESSSTTCCE--EEEEECS-SSCEEEEEECTTSC-EEEEEECCSSCSEEE-EETTTCCB--CBCCCC
T ss_pred ------CCCCEEEEECCCCCCEE--EEEECCC-CCCEEEEEECCCCC-EEEEEECCCCCEEEE-EEEECCCC--CCEECC
T ss_conf ------89978994898984156--6762255-78448999899999-799998997736699-99638997--632547
Q ss_pred CCCCEEEEEEEECCCCCCCC-EEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 89983799991123269999-99999889919999779985999990688878059998662899999999948991999
Q 000709 163 DNKSLVCMEFLSRSAVGDVP-LVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLIL 241 (1339)
Q Consensus 163 h~~~V~~Iaf~P~s~Spdg~-~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg~~LaSgS~DgtIrV 241 (1339)
|...|++++| +|++. .+++|+.|++|++||..++++...+. +|...|.+++ |+|++++|++++.|++|++
T Consensus 146 h~~~v~~v~f-----~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~---fspdg~~las~s~D~~i~l 216 (611)
T 1nr0_A 146 QARAMNSVDF-----KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVR---YNPDGSLFASTGGDGTIVL 216 (611)
T ss_dssp CSSCEEEEEE-----CSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEE---ECTTSSEEEEEETTSCEEE
T ss_pred CCCCCEEEEE-----CCCCCEEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCCEEE
T ss_conf 8898369998-----89998299999289809999799975766520-0257169999---9799998999989991999
Q ss_pred EECCCCCCCCEEC-CCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 9589998520001-420122356665999951027999999999699919999899972688846878545667760498
Q 000709 242 WSADHGQDSRELV-PKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 242 WDi~sg~~i~~~~-~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~~~l~~H~~~V~si 320 (1339)
||+.+++....+. ......+|.+.|.+++|+| ++.+|++++.|++|++||+.+++++.++... ..+......+
T Consensus 217 wd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp---dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~~~ 290 (611)
T 1nr0_A 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP---DGTKIASASADKTIKIWNVATLKVEKTIPVG---TRIEDQQLGI 290 (611)
T ss_dssp EETTTCCEEEECBCTTSSSCSSSSCEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECC---SSGGGCEEEE
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC---CCCCCEEEEE
T ss_conf 889998286651366432356678789999979---9999999908980999968887013440478---8766406899
Q ss_pred EECCCCCEEEEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 7479998999841972--99835786455666743557888982770588625899999039991999997899499994
Q 000709 321 PRAPNLDILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEF 398 (1339)
Q Consensus 321 afspdg~iLs~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG~IlriW 398 (1339)
.|. ...+++++.|+. +|+...+. ....+.+|.. .|++++|+| ++.++++++.||.| ++|
T Consensus 291 ~~~-~~~l~s~s~d~~i~~~~~~~~~---------------~~~~~~gh~~-~v~~l~~sp-dg~~l~s~s~D~~v-~~W 351 (611)
T 1nr0_A 291 IWT-KQALVSISANGFINFVNPELGS---------------IDQVRYGHNK-AITALSSSA-DGKTLFSADAEGHI-NSW 351 (611)
T ss_dssp EEC-SSCEEEEETTCCEEEEETTTTE---------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-EEE
T ss_pred EEC-CCEEEEEECCCCEEEEECCCCC---------------CCEEECCCCC-CEEEEEEEC-CCCEEEEEECCCCE-EEE
T ss_conf 973-8879999589968999688997---------------4469837888-889999918-99989999589849-999
Q ss_pred CCCCCCC
Q ss_conf 5899997
Q 000709 399 DPRSLPA 405 (1339)
Q Consensus 399 d~~~~p~ 405 (1339)
|......
T Consensus 352 d~~~~~~ 358 (611)
T 1nr0_A 352 DISTGIS 358 (611)
T ss_dssp ETTTCCE
T ss_pred ECCCCCE
T ss_conf 7887925
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=334.74 Aligned_cols=402 Identities=13% Similarity=0.118 Sum_probs=301.2
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCCC
Q ss_conf 6792689998899999389999999968990999977988099998136755327753--56663684023557985300
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
...+.+|.+.|++++|+|++++|++|+.||+|++||..+++.+..+. +|...+.++. +++..+++++
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---------- 676 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---------- 676 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCEEEEEE----------
T ss_conf 27871666648999987999989999488949999989997888760-6777789999926999899981----------
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCC-CEEEEEEECCCEE-EEEECCCCEEECCC
Q ss_conf 259843799870992999986776411335651024688886642107999-9299999569499-99910896000241
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKG-RHFLVICCVNKAI-FLDLVTMRGRDIPK 159 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg-~~lLvsgs~dg~I-~wD~~t~~~~~i~~ 159 (1339)
.|+.|++||+.+++++ ....+| ...|.++.|++++ ..++++++.|+.+ +||+.++++ +..
T Consensus 677 -----------~d~~v~vwd~~~~~~~----~~~~~~-~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~ 738 (1249)
T 3sfz_A 677 -----------ADKKVKIWDSATGKLV----HTYDEH-SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC--RNT 738 (1249)
T ss_dssp -----------TTSEEEEEETTTCCEE----EEEECC-SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE--EEE
T ss_pred -----------CCCEEEEEECCCCCEE----EEECCC-CCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCCH--HHE
T ss_conf -----------8995999877999368----999589-9737999984089965999980897099998999634--220
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------------CCCCCEEEEEEEEECCCC
Q ss_conf 12489983799991123269999999998899199997799859999906------------888780599986628999
Q 000709 160 QELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------------GHKGSISCLMTFMASSGE 227 (1339)
Q Consensus 160 ~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~------------gH~~~V~sI~wf~~spdg 227 (1339)
...|...|.++.| +|++.++++++.||.|++||+.+++....+.. .+...+.+++ +++++
T Consensus 739 ~~~h~~~v~~~~~-----sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~s~dg 810 (1249)
T 3sfz_A 739 MFGHTNSVNHCRF-----SPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCS---WSADG 810 (1249)
T ss_dssp ECCCSSCEEEEEE-----CSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCC---BCTTS
T ss_pred ECCCCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEE---ECCCC
T ss_conf 1277797889999-----259998999978985999968888655302023210246776445650179999---97899
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCC
Q ss_conf 99999948991999958999852000142012235666599995102799999999969991999989997268884687
Q 000709 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPV 307 (1339)
Q Consensus 228 ~~LaSgS~DgtIrVWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~ 307 (1339)
..+++++ ++.+.+||+.++.....+ ..+|...|.+++|+| ++.++++++.|+.|++|++.++..+..
T Consensus 811 ~~l~~~~-~~~v~~~d~~~~~~~~~~-----~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vwd~~~~~~~~~---- 877 (1249)
T 3sfz_A 811 DKIIVAA-KNKVLLFDIHTSGLLAEI-----HTGHHSTIQYCDFSP---YDHLAVIALSQYCVELWNIDSRLKVAD---- 877 (1249)
T ss_dssp SEEEEEE-TTEEEEEETTTCCEEEEE-----ECSSSSCCCEEEECS---STTEEEEECSSSCEEEEETTTTEEEEE----
T ss_pred CEEEEEC-CCCEEEEEECCCCCEEEE-----CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEE----
T ss_conf 8899975-895999995689723577-----478777607999827---888899994798699998678956532----
Q ss_pred CCCCCCCCCEEEEEECCCCCE-EEEECCCE--EEECCCCCCCCCCC-----------------------CCCCCCCCCCC
Q ss_conf 854566776049874799989-99841972--99835786455666-----------------------74355788898
Q 000709 308 PKLACHSVASWCHPRAPNLDI-LTCVKDSH--IWAIEHPTYSALTR-----------------------PLCELSSLVPP 361 (1339)
Q Consensus 308 ~~l~~H~~~V~siafspdg~i-Ls~s~Dg~--IWDi~t~~~~~~~~-----------------------~l~~~~~~~~~ 361 (1339)
+.+|...|+++.|+|++.. ++++.|+. +|++.......... ...........
T Consensus 878 --~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (1249)
T 3sfz_A 878 --CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQ 955 (1249)
T ss_dssp --ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCC
T ss_pred --CCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCE
T ss_conf --278766568999989999899995897289887466520102113310368975998689981377624898447650
Q ss_pred EEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEECCCCCC
Q ss_conf 27705886258999990399919999978994999945899997556689999998518999659199998640468888
Q 000709 362 QVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSLPAVAPLPTPSGSRDHSAVYIVERELKLVNFQLSSAANP 441 (1339)
Q Consensus 362 ~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG~IlriWd~~~~p~i~~l~~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~ 441 (1339)
....... .+.+++|+| ++.++++|+.+|.| ++|+.........+....
T Consensus 956 -~~~~~~~-~i~~~~~sp-~g~~l~~g~~~g~i-~i~d~~~~~~~~~~~~h~---------------------------- 1003 (1249)
T 3sfz_A 956 -IDYLPEA-QVSCCCLSP-HLEYVAFGDEDGAI-KIIELPNNRVFSSGVGHK---------------------------- 1003 (1249)
T ss_dssp -EEEECCS-CEEEEEECT-TSSEEEEEETTSCC-EEEETTTTSCEEECCCCS----------------------------
T ss_pred -EEECCCC-CEEEEEECC-CCCEEEEECCCCCE-EEEECCCCCEEEECCCCC----------------------------
T ss_conf -8972567-278999958-99779998699988-999757872344303677----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCEEEE----CC
Q ss_conf 88888522568863488941467874113334567899951899938999899997999979999948951430----57
Q 000709 442 SLGNNGSLSETGRLKGDLPDALQIKQIKKHISTPVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSIVD----SG 517 (1339)
Q Consensus 442 ~l~~~~~~S~~G~~~~~~~~~l~v~~~~r~i~t~~~~e~~s~l~~SpdGkylaV~~~~~g~~~Iy~i~~~~~i~----~G 517 (1339)
.....+.++++|+++ +....++.+.+|++...+... .+
T Consensus 1004 -------------------------------------~~v~~l~~s~dg~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~ 1045 (1249)
T 3sfz_A 1004 -------------------------------------KAVRHIQFTADGKTL-ISSSEDSVIQVWNWQTGDYVFLQAHQE 1045 (1249)
T ss_dssp -------------------------------------SCCCCEEECSSSSCE-EEECSSSBEEEEETTTTEEECCBCCSS
T ss_pred -------------------------------------CCEEEEEECCCCCEE-EEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf -------------------------------------716899998999989-998699879999879996689852787
Q ss_pred CEEEEEECCC
Q ss_conf 5339986269
Q 000709 518 SARLLAWDTC 527 (1339)
Q Consensus 518 s~~~~aW~~~ 527 (1339)
.+..++|+++
T Consensus 1046 ~v~~~~~~~~ 1055 (1249)
T 3sfz_A 1046 TVKDFRLLQD 1055 (1249)
T ss_dssp CEEEEEECSS
T ss_pred CEEEEEECCC
T ss_conf 3899999089
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=327.47 Aligned_cols=336 Identities=16% Similarity=0.207 Sum_probs=214.4
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--C--CCCEEEEECCCCCCCCC
Q ss_conf 6792689998899999389999999968990999977988099998136755327753--5--66636840235579853
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--A--KLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~--d~~~Lasgs~d~~gk~~ 79 (1339)
++.+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++++..+. +|...+.++. + +...+++++
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~-------- 720 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGS-------- 720 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEE--------
T ss_pred EEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCCEEEEEEE--------
T ss_conf 88760677778999992699989998189959998779993689995-899737999984089965999980--------
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEECCCCEEECC
Q ss_conf 002598437998709929999867764113356510246888866421079999299999569499-9991089600024
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I-~wD~~t~~~~~i~ 158 (1339)
.|+.|++||+.++++. ....+| ...|.+++|+|+++ ++++++.|+.+ +||+.+++.....
T Consensus 721 -------------~d~~v~vwd~~~~~~~----~~~~~h-~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 721 -------------NDFFLKLWDLNQKECR----NTMFGH-TNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp -------------TTSCEEEEETTSSSEE----EEECCC-SSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred -------------CCCEEEEEECCCCCHH----HEECCC-CCCEEEEEEECCCC-EEEEEECCCEEEEEECCCCCCCCEE
T ss_conf -------------8970999989996342----201277-79788999925999-8999978985999968888655302
Q ss_pred CC-----------CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCC
Q ss_conf 11-----------2489983799991123269999999998899199997799859999906888780599986628999
Q 000709 159 KQ-----------ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGE 227 (1339)
Q Consensus 159 ~~-----------~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg 227 (1339)
.. ......+.++.| ++++..+++++ ++.+.+||..++.....+..+|...+.++. +++++
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~-----s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~---~sp~~ 852 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSW-----SADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCD---FSPYD 852 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCB-----CTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEE---ECSST
T ss_pred CCCCCCCCCCCCCCCCCCEEEEEEE-----CCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCCCEEEEE---ECCCC
T ss_conf 0232102467764456501799999-----78998899975-895999995689723577478777607999---82788
Q ss_pred CEEEEEECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEE------
Q ss_conf 99999948991999958999852000142012235666599995102799999999969991999989997268------
Q 000709 228 ALLVSGGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKEL------ 301 (1339)
Q Consensus 228 ~~LaSgS~DgtIrVWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l------ 301 (1339)
..+++++.|+.|++|++.++..... +.+|...|.+++|+| ++.++++++.|+.|++|++.+....
T Consensus 853 ~~l~~~~~dg~v~vwd~~~~~~~~~------~~~h~~~v~~v~~sp---dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~ 923 (1249)
T 3sfz_A 853 HLAVIALSQYCVELWNIDSRLKVAD------CRGHLSWVHGVMFSP---DGSSFLTASDDQTIRVWETKKVCKNSAIVLK 923 (1249)
T ss_dssp TEEEEECSSSCEEEEETTTTEEEEE------ECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred CEEEEEECCCEEEEEECCCCCEEEE------CCCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEEEECCC
T ss_conf 8899994798699998678956532------278766568999989---9998999958972898874665201021133
Q ss_pred -----------------------E--EECCCCCCCCCCCCEEEEEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCC
Q ss_conf -----------------------8--846878545667760498747999899-9841972--99835786455666743
Q 000709 302 -----------------------R--RIKPVPKLACHSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLC 353 (1339)
Q Consensus 302 -----------------------~--~l~~~~~l~~H~~~V~siafspdg~iL-s~s~Dg~--IWDi~t~~~~~~~~~l~ 353 (1339)
. ..........+...+.+++|+|++.++ +++.||. +|++.++.
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~--------- 994 (1249)
T 3sfz_A 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR--------- 994 (1249)
T ss_dssp EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS---------
T ss_pred CEEEEEECCCCCEEEEECCCCCEEEEECCCCEEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC---------
T ss_conf 10368975998689981377624898447650897256727899995899779998699988999757872---------
Q ss_pred CCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 55788898277058862589999903999199999789949999458999
Q 000709 354 ELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISEFDPRSL 403 (1339)
Q Consensus 354 ~~~~~~~~~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG~IlriWd~~~~ 403 (1339)
....+..|.. .|.+++|+| ++.++++++.||.| ++|+....
T Consensus 995 ------~~~~~~~h~~-~v~~l~~s~-dg~~l~s~~~dg~i-~vwd~~~~ 1035 (1249)
T 3sfz_A 995 ------VFSSGVGHKK-AVRHIQFTA-DGKTLISSSEDSVI-QVWNWQTG 1035 (1249)
T ss_dssp ------CEEECCCCSS-CCCCEEECS-SSSCEEEECSSSBE-EEEETTTT
T ss_pred ------EEEECCCCCC-CEEEEEECC-CCCEEEEECCCCEE-EEEECCCC
T ss_conf ------3443036777-168999989-99989998699879-99987999
No 5
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=324.22 Aligned_cols=434 Identities=11% Similarity=0.111 Sum_probs=305.3
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC--EEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCC
Q ss_conf 67926899988999993899999999689909999779880--99998136755327753--566636840235579853
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQ--VIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPT 79 (1339)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~--~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~ 79 (1339)
++.|.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ ....+. +|...+..+. ++++.|++++.+..
T Consensus 52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~~~~---- 126 (611)
T 1nr0_A 52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGEGRE---- 126 (611)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEECCSS----
T ss_pred CEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCC----
T ss_conf 7376589986599999999968999948997899489898415667622-55784489998999997999989977----
Q ss_pred CCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEECCCCEEECC
Q ss_conf 002598437998709929999867764113356510246888866421079999299999569499-9991089600024
Q 000709 80 EAMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 80 ~~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I-~wD~~t~~~~~i~ 158 (1339)
..+.+++||. ++.. ..+.+| ...|.+++|+|+++..+++++.|+.+ +||..++++ ..
T Consensus 127 -------------~~~~v~~wd~--~~~~----~~l~gh-~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~--~~ 184 (611)
T 1nr0_A 127 -------------RFGHVFLFDT--GTSN----GNLTGQ-ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--KS 184 (611)
T ss_dssp -------------CSEEEEETTT--CCBC----BCCCCC-SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE--EE
T ss_pred -------------CEEEEEEEEC--CCCC----CEECCC-CCCCEEEEECCCCCEEEEEEECCCEEEEEECCCCEE--EE
T ss_conf -------------3669999638--9976----325478-898369998899982999992898099997999757--66
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEEC------CCCCCEEEEEEEEECCCCCEEEE
Q ss_conf 112489983799991123269999999998899199997799859999906------88878059998662899999999
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTG------GHKGSISCLMTFMASSGEALLVS 232 (1339)
Q Consensus 159 ~~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~------gH~~~V~sI~wf~~spdg~~LaS 232 (1339)
.+..|...|++++| +|++.++++|+.|++|++||..+++++..+.. +|.+.|.+++ |+|++.+|++
T Consensus 185 ~l~~H~~~V~~v~f-----spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~---~spdg~~l~s 256 (611)
T 1nr0_A 185 TFGEHTKFVHSVRY-----NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT---WSPDGTKIAS 256 (611)
T ss_dssp EECCCSSCEEEEEE-----CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE---ECTTSSEEEE
T ss_pred EECCCCCCEEEEEE-----CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEE---ECCCCCEEEE
T ss_conf 52002571699999-----799998999989991999889998286651366432356678789999---9799999999
Q ss_pred EECCCCEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 94899199995899985200014201223566659999510279999999996999199998999726888468785456
Q 000709 233 GGSDGLLILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLAC 312 (1339)
Q Consensus 233 gS~DgtIrVWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~~~l~~ 312 (1339)
++.|++|++||+.++++...+... ..+...+..+.| ++..+++++.|+.+++|+...++.... +.+
T Consensus 257 ~s~D~~v~lWd~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~l~s~s~d~~i~~~~~~~~~~~~~------~~g 322 (611)
T 1nr0_A 257 ASADKTIKIWNVATLKVEKTIPVG---TRIEDQQLGIIW-----TKQALVSISANGFINFVNPELGSIDQV------RYG 322 (611)
T ss_dssp EETTSEEEEEETTTTEEEEEEECC---SSGGGCEEEEEE-----CSSCEEEEETTCCEEEEETTTTEEEEE------ECC
T ss_pred EECCCEEEEEECCCCCEEEEECCC---CCCCCEEEEEEE-----CCCEEEEEECCCCEEEEECCCCCCCEE------ECC
T ss_conf 908980999968887013440478---876640689997-----388799995899689996889974469------837
Q ss_pred CCCCEEEEEECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEE-CCCCCCCEEEEEEECCCCCEEEEE
Q ss_conf 67760498747999899-9841972--9983578645566674355788898277-058862589999903999199999
Q 000709 313 HSVASWCHPRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVL-AHHKKLRVYCMVAHSLQPHLVATG 388 (1339)
Q Consensus 313 H~~~V~siafspdg~iL-s~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl-~~~~~~~I~~ia~sp~~~~lIatG 388 (1339)
|...|++++|+|++.+| +++.|++ +||+.++.. ...+ ..|.. .|.+++|++ ++. ++++
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------------~~~~~~~h~~-~v~~~~~s~-~~~-l~s~ 384 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------------NRVFPDVHAT-MITGIKTTS-KGD-LFTV 384 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------------EECSSCSCSS-CEEEEEECT-TSC-EEEE
T ss_pred CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCCE---------------EEECCCCCCC-EEEEEEECC-CCC-EEEE
T ss_conf 888889999918999899995898499997887925---------------6321667765-078999878-996-9999
Q ss_pred ECCCEEEEEECCCCCCCCCCCC---CCCCCCCCEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 7899499994589999755668---9999998518999659199998640468888888885225688634889414678
Q 000709 389 TNVGVIISEFDPRSLPAVAPLP---TPSGSRDHSAVYIVERELKLVNFQLSSAANPSLGNNGSLSETGRLKGDLPDALQI 465 (1339)
Q Consensus 389 s~DG~IlriWd~~~~p~i~~l~---~~~~s~~~s~~~~~~~~l~l~~f~l~~~~n~~l~~~~~~S~~G~~~~~~~~~l~v 465 (1339)
+.|+.+ ++|+........... .... ....+.+..++... +.+.++.. .+
T Consensus 385 s~d~~v-~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~~------------------~~~~~~~v--------~~ 436 (611)
T 1nr0_A 385 SWDDHL-KVVPAGGSGVDSSKAVANKLSS-QPLGLAVSADGDIA------------------VAACYKHI--------AI 436 (611)
T ss_dssp ETTTEE-EEECSSSSSSCTTSCCEEECSS-CEEEEEECTTSSCE------------------EEEESSEE--------EE
T ss_pred ECCCCE-EEEECCCCCCCCCCEEEEECCC-CCCEEEEECCCCEE------------------EEEECCEE--------EE
T ss_conf 848966-8954688543565212001489-97079980799699------------------99967639--------99
Q ss_pred HHHCCCCCC-CCCCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCEE------EECCCEEEEEECCCCCEEEEEE
Q ss_conf 741133345-678999518999389998999979999799999489514------3057533998626998189983
Q 000709 466 KQIKKHIST-PVPHDSYSILSVSSSGKYLAVVWPDIPYFSVYKVSDWSI------VDSGSARLLAWDTCRDRFAILE 535 (1339)
Q Consensus 466 ~~~~r~i~t-~~~~e~~s~l~~SpdGkylaV~~~~~g~~~Iy~i~~~~~------i~~Gs~~~~aW~~~~~~fAvl~ 535 (1339)
....+ +.. ... .....+++||||+++ +....++.+.+|++..... ...+.+.+++|+|+...++.-.
T Consensus 437 ~~~~~-~~~~~~~-~~v~~va~spdg~~l-asgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s 510 (611)
T 1nr0_A 437 YSHGK-LTEVPIS-YNSSCVALSNDKQFV-AVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATD 510 (611)
T ss_dssp EETTE-EEEEECS-SCEEEEEECTTSCEE-EEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EECCC-EEEEECC-CCCEEEEEECCCCEE-EEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCEEEEEC
T ss_conf 84894-3464068-895499992899899-99689973999994599222410157788607999989999899994
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=322.21 Aligned_cols=320 Identities=18% Similarity=0.268 Sum_probs=240.1
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCCC
Q ss_conf 6792689998899999389999999968990999977988099998136755327753--56663684023557985300
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTEA 81 (1339)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~~ 81 (1339)
.+.|+||++.|++++|||+|++||+|+.|+.|+|||. +++++.++. +|...|.++. +++++|++++
T Consensus 9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~-gh~~~V~~l~fspdg~~las~~---------- 76 (577)
T 2ymu_A 9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASAS---------- 76 (577)
T ss_dssp EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSEEEEEE----------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEE----------
T ss_conf 4398789985799999899899999938998999979-997899996-8989989999989999999996----------
Q ss_pred CCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEE-EECCCCEEECCCC
Q ss_conf 259843799870992999986776411335651024688886642107999929999956949999-9108960002411
Q 000709 82 MRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFL-DLVTMRGRDIPKQ 160 (1339)
Q Consensus 82 l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I~w-D~~t~~~~~i~~~ 160 (1339)
.|+.|++||... +++ ....+| ...|.+++|+|+++ ++++++.|+.+++ +..... ....
T Consensus 77 -----------~d~~i~vWd~~~-~~~----~~~~~~-~~~v~~~~~s~d~~-~l~~~~~d~~~~~~~~~~~~---~~~~ 135 (577)
T 2ymu_A 77 -----------DDKTVKLWNRNG-QLL----QTLTGH-SSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQL---LQTL 135 (577)
T ss_dssp -----------TTSCEEEEETTS-CEE----EEECCC-SSCEEEEEECTTSS-EEEEEETTSCEEEEETTCCE---EEEE
T ss_pred -----------CCCEEEEEECCC-CEE----EEEECC-CCCEEEEEECCCCC-EEEEECCCCCEEECCCCCCE---EEEC
T ss_conf -----------989799998999-789----999789-99889999989999-89998079833520235520---0110
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 24899837999911232699999999988991999977998599999068887805999866289999999994899199
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg~~LaSgS~DgtIr 240 (1339)
..+...+.++.+ ++++..+++++.++.+++|+.... ...... .|...+.++. +++++.++++++.|+.|+
T Consensus 136 ~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~d~~v~ 205 (577)
T 2ymu_A 136 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRNGQ-LLQTLT-GHSSSVWGVA---FSPDGQTIASASDDKTVK 205 (577)
T ss_dssp CCCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTTSC-EEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSEEE
T ss_pred CCCCCCEEEEEE-----ECCCCCCEECCCCCCEECCCCCEE-EEEECC-CCCCCEEEEE---ECCCCCEEEEECCCCEEE
T ss_conf 477774355542-----037763200255531000000000-000026-8776356654---169977899985999899
Q ss_pred EEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 99589998520001420122356665999951027999999999699919999899972688846878545667760498
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 241 VWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~~~l~~H~~~V~si 320 (1339)
+||.. ++.... +.+|...|.+++|+| ++.+|++++.|+.|++|+.. ++.+.. +.+|...|.++
T Consensus 206 ~w~~~-~~~~~~------~~~~~~~v~~~~~s~---dg~~l~~~~~d~~i~~w~~~-~~~~~~------~~~~~~~v~~v 268 (577)
T 2ymu_A 206 LWNRN-GQLLQT------LTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVNGV 268 (577)
T ss_dssp EECTT-SCEEEE------EECCSSCEEEEEECT---TSSCEEEEETTSCEEEECTT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEEEE------EECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99499-968999------946889889999979---99999999189989999599-979999------80688987999
Q ss_pred EECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 747999899-9841972--9983578645566674355788898277058862589999903999199999789949999
Q 000709 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1339)
Q Consensus 321 afspdg~iL-s~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG~Ilri 397 (1339)
+|+|++..+ +++.|+. +|+.... ....+.+|.. .|++++|+| ++.++++++.||.+ ++
T Consensus 269 ~~~~d~~~l~~~~~d~~i~~w~~~~~----------------~~~~~~~h~~-~v~~~~~~~-~~~~l~t~~~d~~i-~~ 329 (577)
T 2ymu_A 269 AFRPDGQTIASASDDKTVKLWNRNGQ----------------LLQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 329 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSC----------------EEEEECCCSS-CEEEEEECT-TSSEEEEEETTSCE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCC----------------EEEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 99689999999959997999948995----------------8999706889-769999999-99999999699959-99
Q ss_pred ECCCC
Q ss_conf 45899
Q 000709 398 FDPRS 402 (1339)
Q Consensus 398 Wd~~~ 402 (1339)
|+...
T Consensus 330 w~~~~ 334 (577)
T 2ymu_A 330 WNRNG 334 (577)
T ss_dssp EETTS
T ss_pred EECCC
T ss_conf 96999
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=1.00 E-value=1 Score=315.77 Aligned_cols=289 Identities=19% Similarity=0.301 Sum_probs=230.2
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 67926899988999993899999999689909999779880999981367553277535666368402355798530025
Q 000709 4 LKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVGAKLEKLAEGELEHKGKPTEAMR 83 (1339)
Q Consensus 4 l~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs~d~~~Lasgs~d~~gk~~~~l~ 83 (1339)
...+.+|.+.|++++|+|++++|++|+.||+|+|||+.+++.+..+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--------------------------------- 147 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--------------------------------- 147 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC---------------------------------
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEE---------------------------------
T ss_conf 07661667768999996999989999389859999899993778881---------------------------------
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEECCCCEEECCCCCC
Q ss_conf 98437998709929999867764113356510246888866421079999299999569499-99910896000241124
Q 000709 84 GGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDIPKQEL 162 (1339)
Q Consensus 84 ~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I-~wD~~t~~~~~i~~~~~ 162 (1339)
+| ...|.+++|+|+++ ++++|+.|+.+ +||+.++++ +.....
T Consensus 148 ---------------------------------~h-~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~--~~~~~~ 190 (410)
T 1vyh_C 148 ---------------------------------GH-TDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFEC--IRTMHG 190 (410)
T ss_dssp ---------------------------------CC-SSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCE--EECCCC
T ss_pred ---------------------------------CC-CCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCE--EEEECC
T ss_conf ---------------------------------66-78687899859999-999991898199995899826--699828
Q ss_pred CCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 89983799991123269999999998899199997799859999906888780599986628999999999489919999
Q 000709 163 DNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLILW 242 (1339)
Q Consensus 163 h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg~~LaSgS~DgtIrVW 242 (1339)
|...|.++.| +|++.++++|+.|++|++||++++.++..+. +|...|.++. +++++.++++|+.|++|++|
T Consensus 191 h~~~V~~v~~-----~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~---~~~~g~~l~s~s~D~~v~vw 261 (410)
T 1vyh_C 191 HDHNVSSVSI-----MPNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVR---PNQDGTLIASCSNDQTVRVW 261 (410)
T ss_dssp CSSCEEEEEE-----CSSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEE---ECTTSSEEEEEETTSCEEEE
T ss_pred CCCCEEEEEE-----ECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEE---ECCCCCEEEEECCCCEEEEE
T ss_conf 9997789999-----6799999999689969999899994899992-7886289999---98999999999189909999
Q ss_pred ECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCC-----------------CCCEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf 5899985200014201223566659999510279-----------------99999999699919999899972688846
Q 000709 243 SADHGQDSRELVPKLSLKAHDGGVVAVELSRVMG-----------------GSPQLITIGADKTLAIWDTVSFKELRRIK 305 (1339)
Q Consensus 243 Di~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~-----------------dg~~LvSgs~DgtIkIWDl~s~~~l~~l~ 305 (1339)
|+.++.+... +.+|...|.++.|+|... .+.+|++|+.|+.|++||++++.++..
T Consensus 262 d~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~-- 333 (410)
T 1vyh_C 262 VVATKECKAE------LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT-- 333 (410)
T ss_dssp ETTTCCEEEE------ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEE--
T ss_pred ECCCCCEEEE------ECCCCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEE--
T ss_conf 8989743667------33787458999985865543101212555556678888999993898499998899966999--
Q ss_pred CCCCCCCCCCCEEEEEECCCCC-EEEEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCC
Q ss_conf 8785456677604987479998-999841972--9983578645566674355788898277058862589999903999
Q 000709 306 PVPKLACHSVASWCHPRAPNLD-ILTCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQP 382 (1339)
Q Consensus 306 ~~~~l~~H~~~V~siafspdg~-iLs~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ia~sp~~~ 382 (1339)
+.+|...|+++.|+|++. +++++.|++ +||+.++ .....+..|.. .|++++|+| ++
T Consensus 334 ----~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---------------~~~~~~~~h~~-~v~~l~~~~-~~ 392 (410)
T 1vyh_C 334 ----LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---------------RCMKTLNAHEH-FVTSLDFHK-TA 392 (410)
T ss_dssp ----EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---------------CCCEEEECCSS-CEEEEEECS-SS
T ss_pred ----EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC---------------CEEEEECCCCC-CEEEEEECC-CC
T ss_conf ----9778885899999499899999959792999989999---------------06899847778-689999828-99
Q ss_pred CEEEEEECCCEEEEEECCC
Q ss_conf 1999997899499994589
Q 000709 383 HLVATGTNVGVIISEFDPR 401 (1339)
Q Consensus 383 ~lIatGs~DG~IlriWd~~ 401 (1339)
.++++|+.||.| ++|+.+
T Consensus 393 ~~l~sgs~D~~i-~vW~~r 410 (410)
T 1vyh_C 393 PYVVTGSVDQTV-KVWECR 410 (410)
T ss_dssp SCEEEEETTSEE-EEEC--
T ss_pred CEEEEEECCCCE-EEEECC
T ss_conf 999999279948-997379
No 8
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=313.82 Aligned_cols=320 Identities=19% Similarity=0.286 Sum_probs=207.8
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCC
Q ss_conf 36792689998899999389999999968990999977988099998136755327753--5666368402355798530
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 3 rl~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
.+++|.+|.+.|++++|+|++++|++++.|++|+|||. +++++..+. +|...+..+. ++++.+++++
T Consensus 49 ~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--------- 117 (577)
T 2ymu_A 49 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASAS--------- 117 (577)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---------
T ss_pred EEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEC-CCCEEEEEE-CCCCCEEEEEECCCCCEEEEEC---------
T ss_conf 89999689899899999899999999969897999989-997899997-8999889999989999899980---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCCC
Q ss_conf 02598437998709929999867764113356510246888866421079999299999569499999108960002411
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAIFLDLVTMRGRDIPKQ 160 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I~wD~~t~~~~~i~~~ 160 (1339)
.|+.+++|+....... ...++ ...+.++.++++++ .++.++.+..+.+....... ....
T Consensus 118 ------------~d~~~~~~~~~~~~~~-----~~~~~-~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~ 176 (577)
T 2ymu_A 118 ------------DDKTVKLWNRNGQLLQ-----TLTGH-SSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQL--LQTL 176 (577)
T ss_dssp ------------TTSCEEEEETTCCEEE-----EECCC-SSCEEEEEECTTSS-CEEEEETTSEEEEECTTSCE--EEEE
T ss_pred ------------CCCCEEECCCCCCEEE-----ECCCC-CCCEEEEEEECCCC-CCEECCCCCCEECCCCCEEE--EEEC
T ss_conf ------------7983352023552001-----10477-77435554203776-32002555310000000000--0002
Q ss_pred CCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCCEE
Q ss_conf 24899837999911232699999999988991999977998599999068887805999866289999999994899199
Q 000709 161 ELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGLLI 240 (1339)
Q Consensus 161 ~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg~~LaSgS~DgtIr 240 (1339)
..+...+.++.| ++++.++++++.|+.|++||.. ++.+..+. +|...|.+++ +++++..|++++.|+.|+
T Consensus 177 ~~~~~~v~~~~~-----~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~~-~~~~~v~~~~---~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 177 TGHSSSVWGVAF-----SPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVA---FSPDGQTIASASDDKTVK 246 (577)
T ss_dssp ECCSSCEEEEEE-----CTTSSCEEEEETTSEEEEECTT-SCEEEEEE-CCSSCEEEEE---ECTTSSCEEEEETTSCEE
T ss_pred CCCCCCEEEEEE-----CCCCCEEEEECCCCEEEEEECC-CCEEEEEE-CCCCCEEEEE---ECCCCCEEEEEECCCEEE
T ss_conf 687763566541-----6997789998599989999499-96899994-6889889999---979999999991899899
Q ss_pred EEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEE
Q ss_conf 99589998520001420122356665999951027999999999699919999899972688846878545667760498
Q 000709 241 LWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSPQLITIGADKTLAIWDTVSFKELRRIKPVPKLACHSVASWCH 320 (1339)
Q Consensus 241 VWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~~LvSgs~DgtIkIWDl~s~~~l~~l~~~~~l~~H~~~V~si 320 (1339)
+||.. ++.+. .+.+|...|++++|+| ++..+++++.|+.|++|+.. ++.+.. +.+|...|+++
T Consensus 247 ~w~~~-~~~~~------~~~~~~~~v~~v~~~~---d~~~l~~~~~d~~i~~w~~~-~~~~~~------~~~h~~~v~~~ 309 (577)
T 2ymu_A 247 LWNRN-GQLLQ------TLTGHSSSVNGVAFRP---DGQTIASASDDKTVKLWNRN-GQLLQT------LTGHSSSVWGV 309 (577)
T ss_dssp EECTT-SCEEE------EECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETT-SCEEEE------ECCCSSCEEEE
T ss_pred EEECC-CCEEE------EEECCCCCEEEEEECC---CCCEEEEEECCCEEEEEECC-CCEEEE------EECCCCCEEEE
T ss_conf 99599-97999------9806889879999968---99999999599979999489-958999------70688976999
Q ss_pred EECCCCCEE-EEECCCE--EEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 747999899-9841972--9983578645566674355788898277058862589999903999199999789949999
Q 000709 321 PRAPNLDIL-TCVKDSH--IWAIEHPTYSALTRPLCELSSLVPPQVLAHHKKLRVYCMVAHSLQPHLVATGTNVGVIISE 397 (1339)
Q Consensus 321 afspdg~iL-s~s~Dg~--IWDi~t~~~~~~~~~l~~~~~~~~~~tl~~~~~~~I~~ia~sp~~~~lIatGs~DG~Ilri 397 (1339)
+|+|++..+ +++.|+. +|+..... ...+..|.. .+++++|+| ++.++++|+.||.+ ++
T Consensus 310 ~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------~~~~~~~~~-~v~~~~~s~-~g~~l~~~~~dg~v-~~ 370 (577)
T 2ymu_A 310 AFSPDGQTIASASDDKTVKLWNRNGQH----------------LQTLTGHSS-SVWGVAFSP-DGQTIASASDDKTV-KL 370 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSCE----------------EEEECCCSS-CEEEEEECT-TSSEEEEEETTSEE-EE
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCE----------------EEEEECCCC-CEEEEEECC-CCCEEEEEECCCEE-EE
T ss_conf 999999999999699959999699972----------------578747889-779999989-99999999699989-99
Q ss_pred ECC
Q ss_conf 458
Q 000709 398 FDP 400 (1339)
Q Consensus 398 Wd~ 400 (1339)
|+.
T Consensus 371 ~~~ 373 (577)
T 2ymu_A 371 WNR 373 (577)
T ss_dssp EET
T ss_pred ECC
T ss_conf 908
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=1.00 E-value=1 Score=310.38 Aligned_cols=253 Identities=13% Similarity=0.219 Sum_probs=206.0
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCC
Q ss_conf 36792689998899999389999999968990999977988099998136755327753--5666368402355798530
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 3 rl~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
.++.+.+|...|++++|+|++++|++++.||.|++||+.+++.+..+. +|...+..+. +++..+++++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~--------- 116 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGS--------- 116 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEE---------
T ss_pred EEEEEECCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEE-CCCCCEEEEEEECCCCEEEEEC---------
T ss_conf 677873389968899996899989999289949999899995879981-6899789999958999899992---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECC-CCCEEEEEEECCCEE-EEEECCCCEEECC
Q ss_conf 02598437998709929999867764113356510246888866421079-999299999569499-9991089600024
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPST-KGRHFLVICCVNKAI-FLDLVTMRGRDIP 158 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafsp-dg~~lLvsgs~dg~I-~wD~~t~~~~~i~ 158 (1339)
.|+.|++|++..+.... ....+| ...+.+++|+| ++. .+++++.|+.+ +||..++.....
T Consensus 117 ------------~dg~i~vw~~~~~~~~~---~~~~~~-~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~~~- 178 (814)
T 3mkq_A 117 ------------DDLTVKLWNWENNWALE---QTFEGH-EHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPNFT- 178 (814)
T ss_dssp ------------TTSEEEEEEGGGTSEEE---EEEECC-SSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCSEE-
T ss_pred ------------CCCEEEEEECCCCCEEE---EEECCC-CCCEEEEEEECCCCC-EEEEEECCCEEEEEECCCCCCEEE-
T ss_conf ------------89989999899995487---998379-986889999769999-999994889499998999961069-
Q ss_pred CCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCCEEEEEECCCC
Q ss_conf 11248998379999112326999999999889919999779985999990688878059998662899999999948991
Q 000709 159 KQELDNKSLVCMEFLSRSAVGDVPLVAFGSSDGVIRVLSMISWKLVRRYTGGHKGSISCLMTFMASSGEALLVSGGSDGL 238 (1339)
Q Consensus 159 ~~~~h~~~V~~Iaf~P~s~Spdg~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH~~~V~sI~wf~~spdg~~LaSgS~Dgt 238 (1339)
....+...+.++.|+| .+++.++++++.|+.|++||+.+++.+..+. +|...|.+++ +++++.++++++.||.
T Consensus 179 ~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~---~~~~~~~l~~~~~dg~ 251 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYP---LPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAV---FHPTLPIIISGSEDGT 251 (814)
T ss_dssp EECCCTTCCCEEEECC---STTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEE---ECSSSSEEEEEETTSC
T ss_pred EECCCCCCEEEEEEEE---CCCCCEEEEEECCCEEEEEECCCCCEEEEEC-CCCCCEEEEE---ECCCCCEEEEEECCCE
T ss_conf 8358889779999997---7999899999389979999999991889984-7888878999---8599999999908996
Q ss_pred EEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCC-EEEEEECCCCEEEEECCCCE
Q ss_conf 99995899985200014201223566659999510279999-99999699919999899972
Q 000709 239 LILWSADHGQDSRELVPKLSLKAHDGGVVAVELSRVMGGSP-QLITIGADKTLAIWDTVSFK 299 (1339)
Q Consensus 239 IrVWDi~sg~~i~~~~~~~~l~gH~~~V~siafsp~~~dg~-~LvSgs~DgtIkIWDl~s~~ 299 (1339)
|++||+.++..... +..|...+.+++|+| ++. .+++.+.|+.+.+|++....
T Consensus 252 v~vwd~~~~~~~~~------~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 252 LKIWNSSTYKVEKT------LNVGLERSWCIATHP---TGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEEETTTCSEEEE------ECCSSSSEEEEEECT---TCGGGEEEEEETTEEEEEECSCCS
T ss_pred EEEEECCCCCEEEE------EECCCCCEEEEEECC---CCCCEEEEEEECCCEEEEECCCCC
T ss_conf 99998999947778------406888679999924---999509999907987999767997
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=301.12 Aligned_cols=251 Identities=12% Similarity=0.099 Sum_probs=168.2
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCEEEEC--CCCCEEEEECCCCCCCCCC
Q ss_conf 36792689998899999389999999968990999977988099998136755327753--5666368402355798530
Q 000709 3 RLKAFRPTNDKIVKIQLHPTHPWLVTADASDHVSVWNWEHRQVIYELKAGGVDQRRLVG--AKLEKLAEGELEHKGKPTE 80 (1339)
Q Consensus 3 rl~~L~gHs~~V~sIafSPdg~~LaSgs~DGtI~IWDl~tg~~i~~l~~~~~~~i~~vs--~d~~~Lasgs~d~~gk~~~ 80 (1339)
+.....||.+.|++++|+|++.+||+|+.||+|+||+..+.+.+..+. |...+..+. + +++|++++
T Consensus 9 ~~~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s--------- 76 (902)
T 2oaj_A 9 AETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN--------- 76 (902)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE---------
T ss_pred CCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEECC--CCCCEEEEEECC-CCEEEEEE---------
T ss_conf 120216889984899997999989999297989999689947999868--999779999908-98899998---------
Q ss_pred CCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCEE-EEEECCCCEEEC--
Q ss_conf 02598437998709929999867764113356510246888866421079999299999569499-999108960002--
Q 000709 81 AMRGGSVKQVNFYDDDVRFWQLWRNRAAAAEAPTAVSNVTSGFASPPPSTKGRHFLVICCVNKAI-FLDLVTMRGRDI-- 157 (1339)
Q Consensus 81 ~l~~g~V~sVaF~Dg~IrIWDl~~~~~i~~~~~~~~~~~~~~V~siafspdg~~lLvsgs~dg~I-~wD~~t~~~~~i-- 157 (1339)
.|+.|++||+.+++++. .. .+ ...|++++|+|+++ ++++|+.|+.+ +||+.++.....
T Consensus 77 ------------~D~~v~lWd~~~~~~~~----~~-~~-~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i 137 (902)
T 2oaj_A 77 ------------AKDTVYVLSLYSQKVLT----TV-FV-PGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKL 137 (902)
T ss_dssp ------------TTCEEEEEETTTCSEEE----EE-EC-SSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred ------------CCCEEEEEECCCCCEEE----EE-CC-CCCEEEEEECCCCC-EEEEECCCCCEEEEECCCCCCCCCEE
T ss_conf ------------95959999899996899----97-48-99879999879999-89999499929999999996265030
Q ss_pred -------CCCCCCCCCEEEEEEEECCCCCC-CCEEEEEECCCCEEEEECCCCEEEEEEECCC------------------
Q ss_conf -------41124899837999911232699-9999999889919999779985999990688------------------
Q 000709 158 -------PKQELDNKSLVCMEFLSRSAVGD-VPLVAFGSSDGVIRVLSMISWKLVRRYTGGH------------------ 211 (1339)
Q Consensus 158 -------~~~~~h~~~V~~Iaf~P~s~Spd-g~~LvsGs~DgtIrIWDl~t~~~i~~l~~gH------------------ 211 (1339)
.....|...|++++| +|+ +..+++|+.|+.| +||+++++++..+. +|
T Consensus 138 ~~~~~~~~~~~~h~~~V~sl~~-----sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 138 DNLQKSSFFPAARLSPIVSIQW-----NPRDIGTVLISYEYVTL-TYSLVENEIKQSFI-YELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp CCHHHHHTCSSSCCCCCCEEEE-----ETTEEEEEEEECSSCEE-EEETTTTEEEEEEC-CCBCTTCCCSTTCCCTTSCB
T ss_pred CCCCCCCCCCCCCCCCEEEEEE-----CCCCCCEEEEEECCCCE-EEECCCCCEEEEEE-CCCCCCCCCCCCCCCCCCCC
T ss_conf 4321000254457897389997-----66999989999189849-99877896579983-35577677765443323456
Q ss_pred CCCEEEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCEECCCCCCC-------------CCCCCEEEEEEECCC-CC
Q ss_conf 8780599986628999999999489919999589998520001420122-------------356665999951027-99
Q 000709 212 KGSISCLMTFMASSGEALLVSGGSDGLLILWSADHGQDSRELVPKLSLK-------------AHDGGVVAVELSRVM-GG 277 (1339)
Q Consensus 212 ~~~V~sI~wf~~spdg~~LaSgS~DgtIrVWDi~sg~~i~~~~~~~~l~-------------gH~~~V~siafsp~~-~d 277 (1339)
...|++++ |+|++.+|++++.|++|++||+++++++.... ..... .|...|++++|++.. ++
T Consensus 211 ~~~V~~v~---fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~-l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd 286 (902)
T 2oaj_A 211 TPKVIQSL---YHPNSLHIITIHEDNSLVFWDANSGHMIMART-VFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPE 286 (902)
T ss_dssp CCCEEEEE---ECTTSSEEEEEETTCCEEEEETTTCCEEEEEC-SSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTT
T ss_pred CCCEEEEE---ECCCCCEEEEEECCCEEEEEECCCCCEEEEEE-ECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 77768999---85999999999899939999878996888885-012345787776788885556774579997349998
Q ss_pred -CCEEEEEECC-----CCEEEEEC
Q ss_conf -9999999699-----91999989
Q 000709 278 -SPQLITIGAD-----KTLAIWDT 295 (1339)
Q Consensus 278 -g~~LvSgs~D-----gtIkIWDl 295 (1339)
+.++++|+.| ..+++|++
T Consensus 287 ~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 287 YTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEEEEEEEECSTTSSCCCEEEEEE
T ss_pred CCEEEEECCCCCCCCCCEEEEEEC
T ss_conf 878999688777788852899954
Done!