BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000711
(1338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/258 (27%), Positives = 117/258 (45%), Gaps = 35/258 (13%)
Query: 410 ADRIHELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVE 469
A+RI E++ +L E P R E IEF V +++++T ++
Sbjct: 327 AERIFEIL----DLEEEKDDPDAVELREVRGE---IEFKNVWFSYDKKKPVLKDITFHIK 379
Query: 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKEIFYVPQRPY 523
PG + + GP GSGK+++ +L + + G I G+ S L I V Q
Sbjct: 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTI 439
Query: 524 TAVGTLRDQLIY--PLTSDQEVE---PLTHGGMVELLKNVDLEYLLDRYPPEKEI---NW 575
T+++ L Y P +D+E++ LTH ++ + P E +
Sbjct: 440 LFSTTVKENLKYGNPGATDEEIKEAAKLTHS-----------DHFIKHLPEGYETVLTDN 488
Query: 576 GDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISH 633
G++LS G++Q L + R F PK ILDE TS V T E+ A + + G + I I+H
Sbjct: 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAH 548
Query: 634 RPALVAFHDVVLSL-DGE 650
R + D+++ L DGE
Sbjct: 549 RLNTIKNADLIIVLRDGE 566
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 116/281 (41%), Gaps = 60/281 (21%)
Query: 1065 RIFELEELLDAAQPGDD-------EISGSSQHK--WNSTDYQDSISFSKLDIITPSQKLL 1115
RIFE+ LD + DD E+ G + K W S D +K +
Sbjct: 329 RIFEI---LDLEEEKDDPDAVELREVRGEIEFKNVWFSYD---------------KKKPV 370
Query: 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG--CG 1173
+ +TF I PG+ + + GP GSGK+++ +L + V G + I + S
Sbjct: 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430
Query: 1174 IFYVPQRPYTCLGTLRDQIIY--PLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
I V Q T+++ + Y P + +E A KL D ++K + E
Sbjct: 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHS-----------DHFIKHLPE 479
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATS 1287
G E V D N ED LS G++Q L + R F PK ILDE T+ T
Sbjct: 480 GY--------ETVLTD---NGED-LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 1288 VDVEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328
++ +++L + G T + + R I L + L DGE
Sbjct: 528 KSIQAAMWKLME--GKTSIIIAHRLNTIKNADLIIVLRDGE 566
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 94/196 (47%), Gaps = 15/196 (7%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE---- 514
+++ L+ VEPG L + GP+G GKS++ +L + + G I G LN E
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRS 1153
Query: 515 -IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
I V Q P ++ + +IY L + +T + E + ++ + P E
Sbjct: 1154 QIAIVSQEPTLFDCSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFET 1209
Query: 574 NWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV-RAM-GTSC 628
GD +LS G++QR+ +AR PK +LDE TSA+ T+ E+ + RA G +C
Sbjct: 1210 RVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTC 1269
Query: 629 ITISHRPALVAFHDVV 644
I I+HR V D +
Sbjct: 1270 IVIAHRLNTVMNADCI 1285
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYV 518
++ + L+V G + + G +G GKS++ +L + ++ G I GV D+N E
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFL-- 490
Query: 519 PQRPYTAVGTLRDQLIYPLTSDQEV----EPLTHGGMVELLKNVDLEYLLDRYPPEKEIN 574
R AV + ++ ++ T ++ + E +T MV K + E + P
Sbjct: 491 --RKNVAVVS-QEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTL 547
Query: 575 WGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMGTSC 628
GD +LS G++QR+ +AR PK +LDE TSA+ + E ++ K A G +
Sbjct: 548 VGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKA-AKGRTT 606
Query: 629 ITISHRPALVAFHDVVLSLDGEGEWRVHDKR 659
I I+HR + + D+++S V D R
Sbjct: 607 IIIAHRLSTIRNADLIISCKNGQVVEVGDHR 637
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 25/180 (13%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHID----EEAGSGC 1172
+ L+F + PG++L + GP+G GKS+V +L + + G + I E S
Sbjct: 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155
Query: 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
I V Q P ++ + IIY L + ++ + +L + N ++ + EG
Sbjct: 1156 AI--VSQEPTLFDCSIAENIIYGLDPSSVTMAQVE---EAARLANIHN----FIAELPEG 1206
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1292
VG + LS G++QR+ +AR PK +LDE T+A + E+
Sbjct: 1207 F-------ETRVG-----DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 35/221 (15%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC--GI 1174
R + + G+++ + G +G GKS++ +L + V+ G +T + + +
Sbjct: 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494
Query: 1175 FYVPQRPYTCLGTLRDQIIYP---LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
V Q P T+ + I ++REE + A K+ EK + T + + Y L
Sbjct: 495 AVVSQEPALFNCTIEENISLGKEGITREEM-VAACKM-ANAEKFIKT--LPNGY--NTLV 548
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD-- 1289
G R + L S G++QR+ +AR PK +LDE T+A +
Sbjct: 549 GDRGTQL------------------SGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590
Query: 1290 --VEEQLYRLAKDMGITFVTSSQRPALIPFHSLELRLIDGE 1328
V++ L + AK G T + + R + I L + +G+
Sbjct: 591 GIVQQALDKAAK--GRTTIIIAHRLSTIRNADLIISCKNGQ 629
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 23/257 (8%)
Query: 414 HELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVL--VENLTLKVEPG 471
H + +I + I+ S Q G + E N ++FSGV PT + ++ L+L+V+ G
Sbjct: 1003 HIIRIIEKTPEIDSYSTQ--GLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059
Query: 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------LNKEIFYVPQRPYTA 525
L + G +G GKS++ ++L + ++G + G L ++ V Q P
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLG 582
++ + + Y S +++ +V K ++ +D P + GD +LS G
Sbjct: 1120 DCSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMGTSCITISHRPALVA 639
++QR+ +AR +P +LDE TSA+ T+ E + K R G +CI I+HR + +
Sbjct: 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLSTIQ 1234
Query: 640 FHDVVLSLDGEGEWRVH 656
D+++ + G+ + H
Sbjct: 1235 NADLIVVIQ-NGKVKEH 1250
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDLNKE 514
+++ L LKV+ G + + G +G GKS+ +++ L+ + G ++ G + +E
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 515 IF-YVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
I V Q P T+ + + Y +T D+ + + + + + L + D E
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGE 522
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTS 627
+ G +LS G++QR+ +AR PK +LDE TSA+ T+ E A K R G +
Sbjct: 523 R----GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRT 577
Query: 628 CITISHRPALVAFHDVVLSLDG 649
I I+HR + V DV+ DG
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDG 599
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 128/317 (40%), Gaps = 59/317 (18%)
Query: 995 VTKQLPHNVTWGLSLL-----YAMEH-KGDRALVSTQGELAHALRFLASVVSQSFLAFGD 1048
+ K + N++ G + L YA+ G ++S + + L SV+ +F + G
Sbjct: 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAF-SVGQ 343
Query: 1049 ILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII 1108
F G +F++ + +P D S S HK + + Q ++ F +
Sbjct: 344 ASPNIEAFANARGAAYEVFKIID----NKPSIDSFSKSG-HKPD--NIQGNLEFKNIHFS 396
Query: 1109 TPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE 1166
PS+K + + L ++ G+++ + G +G GKS+ ++++ L+ + G ++ Q I
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 1167 EAGSGCGIFY-------VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219
+ Y V Q P T+ + I Y RE+ + + EK V
Sbjct: 457 -----INVRYLREIIGVVSQEPVLFATTIAENIRY--GREDVTMDEI------EKAVKEA 503
Query: 1220 NILDSYLK-----TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1274
N D +K L G R + L S G++QR+ +AR P
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQL------------------SGGQKQRIAIARALVRNP 545
Query: 1275 KFGILDECTNATSVDVE 1291
K +LDE T+A + E
Sbjct: 546 KILLLDEATSALDTESE 562
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 113/288 (39%), Gaps = 53/288 (18%)
Query: 1029 AHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDD------- 1081
A A RF A +V+Q + F ++L + V + + ++ A
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 1082 ---EISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA--RQLTFEIVPGKSLLVTGPNG 1136
EI S + ++ FS + P++ + + L+ E+ G++L + G +G
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 1137 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSGCGIFYVPQRPYTCLGTLRDQI 1192
GKS+V ++L + ++GS+ + I + + GI V Q P ++ + I
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI--VSQEPILFDCSIAENI 1127
Query: 1193 IYP-----LSREEAELRALK---LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEV 1244
Y +S EE +RA K +H + L D N T L G
Sbjct: 1128 AYGDNSRVVSYEEI-VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG------------ 1174
Query: 1245 GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1292
G++QR+ +AR +P +LDE T+A + E+
Sbjct: 1175 --------------GQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 23/257 (8%)
Query: 414 HELMVISRELSIEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVL--VENLTLKVEPG 471
H + +I + I+ S Q G + E N ++FSGV PT + ++ L+L+V+ G
Sbjct: 1003 HIIRIIEKTPEIDSYSTQ--GLKPNMLEGN-VQFSGVVFNYPTRPSIPVLQGLSLEVKKG 1059
Query: 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------LNKEIFYVPQRPYTA 525
L + G +G GKS++ ++L + ++G + G L ++ V Q P
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF 1119
Query: 526 VGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLG 582
++ + + Y S +++ +V K ++ +D P + GD +LS G
Sbjct: 1120 DCSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175
Query: 583 EQQRLGMARLFYHKPKFAILDECTSAVTTDME---ERFCAKVRAMGTSCITISHRPALVA 639
++QR+ +AR +P +LDE TSA+ T+ E + K R G +CI I+HR + +
Sbjct: 1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKARE-GRTCIVIAHRLSTIQ 1234
Query: 640 FHDVVLSLDGEGEWRVH 656
D+++ + G+ + H
Sbjct: 1235 NADLIVVIQ-NGKVKEH 1250
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 19/202 (9%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG-----VGSDLNKE 514
+++ L LKV+ G + + G +G GKS+ +++ L+ + G ++ G + +E
Sbjct: 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLRE 464
Query: 515 IF-YVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
I V Q P T+ + + Y +T D+ + + + + + L + D E
Sbjct: 465 IIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI--MKLPHQFDTLVGE 522
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA---KVRAMGTS 627
+ G +LS G++QR+ +AR PK +LDE TSA+ T+ E A K R G +
Sbjct: 523 R----GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE-GRT 577
Query: 628 CITISHRPALVAFHDVVLSLDG 649
I I+HR + V DV+ DG
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDG 599
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 128/317 (40%), Gaps = 59/317 (18%)
Query: 995 VTKQLPHNVTWGLSLL-----YAMEH-KGDRALVSTQGELAHALRFLASVVSQSFLAFGD 1048
+ K + N++ G + L YA+ G ++S + + L SV+ +F + G
Sbjct: 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAF-SVGQ 343
Query: 1049 ILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII 1108
F G +F++ + +P D S S HK + + Q ++ F +
Sbjct: 344 ASPNIEAFANARGAAYEVFKIID----NKPSIDSFSKSG-HKPD--NIQGNLEFKNIHFS 396
Query: 1109 TPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE 1166
PS+K + + L ++ G+++ + G +G GKS+ ++++ L+ + G ++ Q I
Sbjct: 397 YPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456
Query: 1167 EAGSGCGIFY-------VPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTT 1219
+ Y V Q P T+ + I Y RE+ + + EK V
Sbjct: 457 -----INVRYLREIIGVVSQEPVLFATTIAENIRY--GREDVTMDEI------EKAVKEA 503
Query: 1220 NILDSYLK-----TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKP 1274
N D +K L G R + L S G++QR+ +AR P
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQL------------------SGGQKQRIAIARALVRNP 545
Query: 1275 KFGILDECTNATSVDVE 1291
K +LDE T+A + E
Sbjct: 546 KILLLDEATSALDTESE 562
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 53/288 (18%)
Query: 1029 AHALRFLASVVSQSFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDD------- 1081
A RF A +V+Q + F ++L + V + + ++ A
Sbjct: 950 AACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 1082 ---EISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLA--RQLTFEIVPGKSLLVTGPNG 1136
EI S + ++ FS + P++ + + L+ E+ G++L + G +G
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 1137 SGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEA----GSGCGIFYVPQRPYTCLGTLRDQI 1192
GKS+V ++L + ++GS+ + I + + GI V Q P ++ + I
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI--VSQEPILFDCSIAENI 1127
Query: 1193 IYP-----LSREEAELRALK---LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEV 1244
Y +S EE +RA K +H + L D N T L G
Sbjct: 1128 AYGDNSRVVSYEEI-VRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSG------------ 1174
Query: 1245 GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEE 1292
G++QR+ +AR +P +LDE T+A + E+
Sbjct: 1175 --------------GQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 22/199 (11%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------LNK 513
++ +++ + +P S + GP+G GKS++F +L + +G I G D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 514 EIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEY---LLDRYPPE 570
+I +V Q GT+R+ L Y L D E +L + +DL + ++ P +
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLEGDYTDE--------DLWQVLDLAFARSFVENMPDQ 128
Query: 571 KEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--G 625
G+ ++S G++QRL +AR F PK +LDE T+++ ++ E + ++ G
Sbjct: 129 LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKG 188
Query: 626 TSCITISHRPALVAFHDVV 644
+ + I+HR + + D +
Sbjct: 189 RTTLVIAHRLSTIVDADKI 207
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 26/197 (13%)
Query: 1100 ISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTK 1159
+S +D + + R ++FE P + GP+G GKS++F +L + +G +T
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 1160 PSQHIDEEAGSG--CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVD 1217
Q ID + I +V Q GT+R+ + Y L + + D
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTD-------------ED 108
Query: 1218 TTNILD-SYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
+LD ++ ++ +E + E E G +S G++QRL +AR F PK
Sbjct: 109 LWQVLDLAFARSFVENMPDQLNTEVGERGVK--------ISGGQRQRLAIARAFLRNPKI 160
Query: 1277 GILDECTNATSVDVEEQ 1293
+LDE T S+D E +
Sbjct: 161 LMLDEAT--ASLDSESE 175
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF V G +++++ V PG L + GP+G+GKS++ R+L + + SG I
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113
Query: 505 PG------VGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTS--DQEVEPLTHGGMVELLK 556
G + L I VPQ T+ D + Y + + EVE
Sbjct: 114 DGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQA------- 166
Query: 557 NVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM 613
+ + +P G+ +LS GE+QR+ +AR P +LDE TSA+ T
Sbjct: 167 -AGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225
Query: 614 EERF---CAKVRAMGTSCITISHRPALVAFHDVVLSL-DG 649
E AKV A T+ I ++HR + V D +L + DG
Sbjct: 226 ERAIQASLAKVCANRTT-IVVAHRLSTVVNADQILVIKDG 264
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--EAGSGCGI 1174
+ ++F ++PG++L + GP+G+GKS++ R+L + + SG + Q I + +A I
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130
Query: 1175 FYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
VPQ T+ D I Y R + + E I D+ + EG
Sbjct: 131 GVVPQDTVLFNDTIADNIRYG--------RVTAGNDEVEAAAQAAGIHDAIM-AFPEG-- 179
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA 1285
Y + E G LS GE+QR+ +AR P +LDE T+A
Sbjct: 180 --YRTQVGERGLK--------LSGGEKQRVAIARTILKAPGIILLDEATSA 220
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K Q NG R + S+ N + FS + +V GN +++N+ L +E G L ITG GSGK+S
Sbjct: 23 EKVQQSNGDRKHXSDENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G + + Q + GT+++ +I+ ++ D+
Sbjct: 80 LLMLILGELEASEGIIKHSG-------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYK- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K L+ + ++ + G+ LS G++ R+ +AR Y +LD
Sbjct: 132 ------SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Score = 36.6 bits (83), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 56/231 (24%)
Query: 1071 ELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLL 1130
ELL+ Q + G +H + ++++SFS L ++ + + + I G+ L
Sbjct: 20 ELLEKVQQSN----GDRKHXSD----ENNVSFSHLCLVGNP---VLKNINLNIEKGEMLA 68
Query: 1131 VTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRD 1190
+TG GSGK+S+ ++ G G + + + + Q + GT+++
Sbjct: 69 ITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGTIKE 117
Query: 1191 QIIYPLSREE----AELRALKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREEV 1244
II+ +S +E + ++A +L K + N T+L GV LS
Sbjct: 118 NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN-------TVLGEGGVTLSG------- 163
Query: 1245 GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
G++ R+ +AR + +LD V EEQ++
Sbjct: 164 --------------GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 31/205 (15%)
Query: 445 IEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAK 504
IEF GV+ + P G V ++ ++ G + + GP+GSGK+++ R++ GL G +
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 505 PGVGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMV 552
G K + +P + VG T+ D + + L + + +
Sbjct: 75 GG------KRVTDLPPQKRN-VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVR 127
Query: 553 ELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
ELL+ + LE +R+P ELS G+QQR+ +AR +P+ + DE +A+ T
Sbjct: 128 ELLRFMRLESYANRFP--------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 613 MEERFCAKVR----AMGTSCITISH 633
+ VR MG + + ++H
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTH 204
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 35/224 (15%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
+I F ++ I P R ++F+I G+ + + GP+GSGK+++ R++ GL G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 1159 KPSQHIDEEAGSGCGIFYVPQRPYTCLG--TLRDQIIYPLSREEAELRALKLHGKGEKLV 1216
+ + + + V Q Y T+ D + + L EK V
Sbjct: 74 IGGKRVTDLPPQKRNVGLVFQN-YALFQHMTVYDNVSFGLR---------------EKRV 117
Query: 1217 DTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKF 1276
+D+ ++ +L +RL R + LS G+QQR+ +AR +P+
Sbjct: 118 PKDE-MDARVRELLRFMRLESYANR----------FPHELSGGQQQRVALARALAPRPQV 166
Query: 1277 GILDECTNATSVDVEEQLYRLAK----DMGIT--FVTSSQRPAL 1314
+ DE A + +L + +MG+T FVT Q AL
Sbjct: 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEAL 210
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K Q NG R + S+ N + FS + +V GN +++N+ L +E G L ITG GSGK+S
Sbjct: 23 EKVQQSNGDRKHSSDENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G + + Q + GT+++ +I+ ++ D+
Sbjct: 80 LLMLILGELEASEGIIKHSG-------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYK- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K L+ + ++ + G+ LS G++ R+ +AR Y +LD
Sbjct: 132 ------SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 96/232 (41%), Gaps = 58/232 (25%)
Query: 1071 ELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSL 1129
ELL+ Q + G +H S+D ++++SFS L ++ P + + + I G+ L
Sbjct: 20 ELLEKVQQSN----GDRKH---SSD-ENNVSFSHLCLVGNP----VLKNINLNIEKGEML 67
Query: 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 1189
+TG GSGK+S+ ++ G G + + + + Q + GT++
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGTIK 116
Query: 1190 DQIIYPLSREE----AELRALKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREE 1243
+ II+ +S +E + ++A +L K + N T+L GV LS
Sbjct: 117 ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDN-------TVLGEGGVTLSG------ 163
Query: 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
G++ R+ +AR + +LD V EEQ++
Sbjct: 164 ---------------GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K Q NG R + S+ N + FS + +V GN +++N+ L +E G L ITG GSGK+S
Sbjct: 23 EKVQQSNGDRKHSSDENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G + + Q + GT+++ +I ++ D+
Sbjct: 80 LLMLILGELEASEGIIKHSG-------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYK- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K L+ + ++ + G+ LS G++ R+ +AR Y +LD
Sbjct: 132 ------SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Score = 35.4 bits (80), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 58/232 (25%)
Query: 1071 ELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSL 1129
ELL+ Q + G +H S+D ++++SFS L ++ P + + + I G+ L
Sbjct: 20 ELLEKVQQSN----GDRKH---SSD-ENNVSFSHLCLVGNP----VLKNINLNIEKGEML 67
Query: 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 1189
+TG GSGK+S+ ++ G G + + + + Q + GT++
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGTIK 116
Query: 1190 DQIIYPLSREE----AELRALKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREE 1243
+ II +S +E + ++A +L K + N T+L GV LS
Sbjct: 117 ENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDN-------TVLGEGGVTLSG------ 163
Query: 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
G++ R+ +AR + +LD V EEQ++
Sbjct: 164 ---------------GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 84/180 (46%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K Q NG R + S+ N + FS + +V GN +++N+ L +E G L ITG GSGK+S
Sbjct: 23 EKVQQSNGDRKHSSDENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G + + Q + GT+++ +I ++ D+
Sbjct: 80 LLMLILGELEASEGIIKHSG-------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYK- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K L+ + ++ + G+ LS G++ R+ +AR Y +LD
Sbjct: 132 ------SVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 185
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 58/232 (25%)
Query: 1071 ELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSL 1129
ELL+ Q + G +H S+D ++++SFS L ++ P + + + I G+ L
Sbjct: 20 ELLEKVQQSN----GDRKH---SSD-ENNVSFSHLCLVGNP----VLKNINLNIEKGEML 67
Query: 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 1189
+TG GSGK+S+ ++ G G + + + + Q + GT++
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGTIK 116
Query: 1190 DQIIYPLSREE----AELRALKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREE 1243
+ II +S +E + ++A +L K + N T+L GV LS
Sbjct: 117 ENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDN-------TVLGEGGVTLSG------ 163
Query: 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
G++ R+ +AR + +LD V EEQ++
Sbjct: 164 ---------------GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 200
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 24/193 (12%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V ++N+ + +E G I GP+G+GK++ R++ GL +G + N ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 519 PQRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGMV---------ELLKNVDLEYLLDRY 567
P+ + + +YP LT+ + + PLT+ M E+ K +D+ ++L+ +
Sbjct: 79 PEDRKIGM-VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---- 623
P ELS G+QQR+ +AR P +LDE S + M + A V+
Sbjct: 138 P--------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 624 MGTSCITISHRPA 636
+G + + +SH PA
Sbjct: 190 LGVTLLVVSHDPA 202
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 56/218 (25%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
+ I G+ + GP+G+GK++ R++ GL +G L + D+ + G V
Sbjct: 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL-----YFDDRLVASNGKLIV 77
Query: 1178 PQRPYTCLGTLRDQIIYP----------------LSREEAELRALKLHGKGEKLVDTTNI 1221
P + +YP +S+EE R ++ K++D ++
Sbjct: 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEV----AKILDIHHV 133
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
L+ + RE LS G+QQR+ +AR P +LDE
Sbjct: 134 LNHF--------------PRE-------------LSGGQQQRVALARALVKDPSLLLLDE 166
Query: 1282 CTNATSVDVEEQLYRLAKD----MGITFVTSSQRPALI 1315
+ + + L K+ +G+T + S PA I
Sbjct: 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI 204
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG---VGSD 510
TP +EN++L + G LL+ G GSGKS+L +++ GL SG + G G +
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75
Query: 511 LNKEI---FYVPQRPYTAVGTLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDLEYLL 564
+ + I F P+ + A D++ + + + D++ PL M E + +D +
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVF-DEVAFAVKNFYPDRDPVPLVKKAM-EFV-GLDFDSFK 132
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAK 620
DR P LS GE++R+ +A + H+P ILDE + TD+ R K
Sbjct: 133 DRVPF--------FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL-LRIVEK 183
Query: 621 VRAMGTSCITISHRPALVAFH 641
+ +G + I ISH V H
Sbjct: 184 WKTLGKTVILISHDIETVINH 204
Score = 37.7 bits (86), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 26/174 (14%)
Query: 1109 TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-LTKPSQHIDEE 1167
TP +K ++ I G+ LLV G GSGKS++ +++ GL SG L + E
Sbjct: 16 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 75
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
GI + Q P DQ +E + + + +K
Sbjct: 76 IRRNIGIAF--QYP-------EDQFFAERVFDEVAFAVKNFYPDRDPV--------PLVK 118
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+E V L + ++ V + LS GE++R+ +A + H+P ILDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF--------FLSGGEKRRVAIASVIVHEPDILILDE 164
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 21/203 (10%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWP------LVSGHIAKPGVGSDLNK 513
+++++ L +E G + G +G GKS+L ++ + L+ GH K + L
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415
Query: 514 EIFYVPQRPYTAVGTLRDQLIY--PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEK 571
+I V Q T+++ ++ P +D+EV VE K + + P
Sbjct: 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEV--------VEAAKMANAHDFIMNLPQGY 467
Query: 572 EINWGD---ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERF--CAKVRAMGT 626
+ G+ +LS G++QRL +AR+F + P ILDE TSA+ + E V +
Sbjct: 468 DTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDR 527
Query: 627 SCITISHRPALVAFHDVVLSLDG 649
+ + ++HR + + D ++ ++
Sbjct: 528 TTLIVAHRLSTITHADKIVVIEN 550
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 124/300 (41%), Gaps = 57/300 (19%)
Query: 1035 LASVVSQSFLAFGDILELHRKFVELS---GGINRIFEL-EELLD-----AAQPGDDEISG 1085
LA+ V L FG + L F L+ ++R+F+L +E D AQP
Sbjct: 280 LAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQP------- 332
Query: 1086 SSQHKWNSTDYQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRV 1145
+ K D D +SF D P + + + I G+++ G +G GKS++ +
Sbjct: 333 -IEIKQGRIDI-DHVSFQYNDNEAP----ILKDINLSIEKGETVAFVGMSGGGKSTLINL 386
Query: 1146 LRGLWPVVSGSLTKPSQHI-DEEAGS-GCGIFYVPQRPYTCLGTLRDQIIY--PLSREEA 1201
+ + V SG + +I D GS I V Q T+++ I+ P + +E
Sbjct: 387 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 446
Query: 1202 ELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGE 1260
+ A K+ + +++ G+D + + LS G+
Sbjct: 447 VVEAAKMANAHDFIMNLPQ------------------------GYDTEVGERGVKLSGGQ 482
Query: 1261 QQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGITFVTSSQRPALIPFHSL 1320
+QRL +AR+F + P ILDE T+A ++ E + + A D V S R LI H L
Sbjct: 483 KQRLSIARIFLNNPPILILDEATSALDLE-SESIIQEALD-----VLSKDRTTLIVAHRL 536
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 25/201 (12%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG---VGSD 510
TP +EN++L + G LL+ G GSGKS+L +++ GL SG + G G +
Sbjct: 18 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 77
Query: 511 LNKEI---FYVPQRPYTAVGTLRDQLIYPLTS---DQEVEPLTHGGMVELLKNVDLEYLL 564
+ + I F P+ + A D++ + + + D++ PL M E + +D +
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVF-DEVAFAVKNFYPDRDPVPLVKKAM-EFV-GLDFDSFK 134
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAK 620
DR P LS GE++R+ +A + H+P ILDE + TD+ R K
Sbjct: 135 DRVPF--------FLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL-LRIVEK 185
Query: 621 VRAMGTSCITISHRPALVAFH 641
+ +G + I ISH V H
Sbjct: 186 WKTLGKTVILISHDIETVINH 206
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 26/174 (14%)
Query: 1109 TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS-LTKPSQHIDEE 1167
TP +K ++ I G+ LLV G GSGKS++ +++ GL SG L + E
Sbjct: 18 TPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE 77
Query: 1168 AGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLK 1227
GI + Q P DQ +E + + + +K
Sbjct: 78 IRRNIGIAF--QYP-------EDQFFAERVFDEVAFAVKNFYPDRDPV--------PLVK 120
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+E V L + ++ V + LS GE++R+ +A + H+P ILDE
Sbjct: 121 KAMEFVGLDFDSFKDRVPF--------FLSGGEKRRVAIASVIVHEPDILILDE 166
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 445 IEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
++F V P +VLV + LT + PG + GPNGSGKS++ +L L+ G +
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 503 ---AKPGVGSD---LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLK 556
KP + L++++ V Q P +L++ + Y LT +E +T V+
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEIT-AAAVKSGA 133
Query: 557 NVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD---- 612
+ + L Y E + G +LS G++Q + +AR KP ILD+ TSA+ +
Sbjct: 134 HSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQ 192
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDG 649
+E+ S + I+ +LV D +L L+G
Sbjct: 193 VEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEG 229
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 40/211 (18%)
Query: 1100 ISFSKLDIITPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL 1157
+ F + P++ L+ + LTF + PG+ + GPNGSGKS+V +L+ L+ G L
Sbjct: 15 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 74
Query: 1158 ---TKP-----SQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLH 1209
KP +++ + + V Q P +L++ I Y L+++
Sbjct: 75 LLDGKPLPQYEHRYLHRQVAA------VGQEPQVFGRSLQENIAYGLTQKPTM------- 121
Query: 1210 GKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARL 1269
E++ T + S + + G+ Y E +E G LS G++Q + +AR
Sbjct: 122 ---EEI--TAAAVKSGAHSFISGLPQGYDTEVDEAGSQ--------LSGGQRQAVALARA 168
Query: 1270 FFHKPKFGILDECTNA----TSVDVEEQLYR 1296
KP ILD+ T+A + + VE+ LY
Sbjct: 169 LIRKPCVLILDDATSALDANSQLQVEQLLYE 199
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 22/166 (13%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKE-- 514
N ++NL+LKVE G +I GP G+GK+ ++ G SG I G +DL+ E
Sbjct: 13 NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKH 72
Query: 515 -IFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
I +V Q P+ V + L + + + +P +++ +++ +E+LLDR P
Sbjct: 73 DIAFVYQNYSLFPHMNV---KKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPL 126
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE 615
LS GEQQR+ +AR PK +LDE SA+ +E
Sbjct: 127 --------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 84/204 (41%), Gaps = 34/204 (16%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYV 1177
L+ ++ G+ ++ GP G+GK+ ++ G SG + + + + + I +V
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77
Query: 1178 PQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSY 1237
Q Y L + L+ + +K+ D +LD+ +++ +
Sbjct: 78 YQN-------------YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTA-----RDLKIEH 119
Query: 1238 LLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNA----TSVDVEEQ 1293
LL+R + LS GEQQR+ +AR PK +LDE +A T + E
Sbjct: 120 LLDRNPL----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169
Query: 1294 LYRLAKDMGITF--VTSSQRPALI 1315
L L K +T +T Q A I
Sbjct: 170 LSVLHKKNKLTVLHITHDQTEARI 193
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNK- 513
+++ + + + G +++ GP+GSGKS+ R L L G I G+ ++LNK
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 514 --EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
E+ V QR P+ V L + + P+ + +ELL V L+ Y
Sbjct: 78 REEVGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 624
P D LS G+ QR+ +AR +PK + DE TSA+ +M + ++ +
Sbjct: 136 P--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 187
Query: 625 GTSCITISHRPALV-AFHDVVLSLDG 649
G + + ++H D VL +DG
Sbjct: 188 GMTMVVVTHEMGFAREVGDRVLFMDG 213
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 53/229 (23%)
Query: 1096 YQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---- 1151
+Q SF L+++ + + I G+ ++V GP+GSGKS+ R L L
Sbjct: 7 HQLKKSFGSLEVL--------KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 58
Query: 1152 --VVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS-----REEAELR 1204
++ G K + G+ + + + L + + P+ RE+AE +
Sbjct: 59 EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK 118
Query: 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
A++L L+ V L D + D LS G+ QR+
Sbjct: 119 AMEL---------------------LDKVGLK----------DKAHAYPDSLSGGQAQRV 147
Query: 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQ 1310
+AR +PK + DE T+A ++ ++ + K + G+T V +
Sbjct: 148 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 196
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNK- 513
+++ + + + G +++ GP+GSGKS+ R L L G I G+ ++LNK
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 514 --EIFYVPQR----PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRY 567
E+ V QR P+ V L + + P+ + +ELL V L+ Y
Sbjct: 99 REEVGMVFQRFNLFPHMTV--LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--- 624
P D LS G+ QR+ +AR +PK + DE TSA+ +M + ++ +
Sbjct: 157 P--------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE 208
Query: 625 GTSCITISHRPALV-AFHDVVLSLDG 649
G + + ++H D VL +DG
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG 234
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 53/229 (23%)
Query: 1096 YQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP---- 1151
+Q SF L+++ + + I G+ ++V GP+GSGKS+ R L L
Sbjct: 28 HQLKKSFGSLEVL--------KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG 79
Query: 1152 --VVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLS-----REEAELR 1204
++ G K + G+ + + + L + + P+ RE+AE +
Sbjct: 80 EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAK 139
Query: 1205 ALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRL 1264
A++L L+ V L D + D LS G+ QR+
Sbjct: 140 AMEL---------------------LDKVGLK----------DKAHAYPDSLSGGQAQRV 168
Query: 1265 GMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDM---GITFVTSSQ 1310
+AR +PK + DE T+A ++ ++ + K + G+T V +
Sbjct: 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTH 217
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 459 VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYV 518
V ++N+ + +E G I GP+G+GK++ R++ GL +G + N ++
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 519 PQRPYTAVGTLRDQLIYP-LTSDQEVE-PLTHGGMV---------ELLKNVDLEYLLDRY 567
P+ + + +YP LT+ + + PLT+ M E+ K +D+ ++L+ +
Sbjct: 79 PEDRKIGM-VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHF 137
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRA---- 623
P ELS +QQR+ +AR P +LDE S + M + A V+
Sbjct: 138 P--------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 624 MGTSCITISHRPA 636
+G + + +SH PA
Sbjct: 190 LGVTLLVVSHDPA 202
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 433 NGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
+GS + ++F V P NV V + LT + PG + GPNGSGKS++ +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 491 LGGLWPLVSGHI---AKPGVGSD---LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
L L+ G + +P V D L+ ++ V Q P + R+ + Y LT +E
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME 124
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAI 601
+T M + + +P + E+ G++LS G++Q + +AR KP+ I
Sbjct: 125 EITAVAMESGAHD-----FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 602 LDECTSAVTTDMEER 616
LD+ TSA+ + R
Sbjct: 180 LDQATSALDAGNQLR 194
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL---TKPSQHIDEEAGSGCGIF 1175
LTF + PGK + GPNGSGKS+V +L+ L+ G + +P D +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY-LHTQVA 96
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
V Q P + R+ I Y L+R E++ T ++S + G
Sbjct: 97 AVGQEPLLFGRSFRENIAYGLTRTPTM----------EEI--TAVAMESGAHDFISGFPQ 144
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
Y E E G + LS G++Q + +AR KP+ ILD+ T+A + ++
Sbjct: 145 GYDTEVGETG--------NQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQ 196
Query: 1296 RL 1297
RL
Sbjct: 197 RL 198
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 91/195 (46%), Gaps = 16/195 (8%)
Query: 433 NGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
+GS + ++F V P NV V + LT + PG + GPNGSGKS++ +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 491 LGGLWPLVSGHI---AKPGVGSD---LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
L L+ G + +P V D L+ ++ V Q P + R+ + Y LT +E
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME 124
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAI 601
+T M + + +P + E+ G++L++G++Q + +AR KP+ I
Sbjct: 125 EITAVAMESGAHD-----FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLI 179
Query: 602 LDECTSAVTTDMEER 616
LD TSA+ + R
Sbjct: 180 LDNATSALDAGNQLR 194
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 24/182 (13%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL---TKPSQHIDEEAGSGCGIF 1175
LTF + PGK + GPNGSGKS+V +L+ L+ G + +P D +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY-LHTQVA 96
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
V Q P + R+ I Y L+R E++ T ++S + G
Sbjct: 97 AVGQEPLLFGRSFRENIAYGLTRTPTM----------EEI--TAVAMESGAHDFISGFPQ 144
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
Y E E G + L++G++Q + +AR KP+ ILD T+A + ++
Sbjct: 145 GYDTEVGETG--------NQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1296 RL 1297
RL
Sbjct: 197 RL 198
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 87/199 (43%), Gaps = 17/199 (8%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNK 513
++ + V+PGS + + G GSGKS+L ++ L G + + DL
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417
Query: 514 EIFYVPQRPYTAVGTLRDQLIY---PLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
I VPQ GT+++ L + T D+ VE + + + + L + Y
Sbjct: 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS-----LPEGYDSR 472
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCIT 630
E G S G++QRL +AR KPK ILD+CTS+V E+R ++ C T
Sbjct: 473 VE-RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 631 --ISHRPALVAFHDVVLSL 647
I+ + D +L L
Sbjct: 532 FIITQKIPTALLADKILVL 550
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 52/284 (18%)
Query: 1042 SFLAFGDILELHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWNSTDYQDSIS 1101
S + G+IL V S R+ E+ A + D+ ++ + + S+S
Sbjct: 295 SLMMIGNILNF---IVRASASAKRVLEVLNEKPAIEEADNALA--------LPNVEGSVS 343
Query: 1102 FSKLDI--ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVL-RGLWP----VVS 1154
F ++ + +L+ + F + PG + V G GSGKS++ ++ R + P V
Sbjct: 344 FENVEFRYFENTDPVLS-GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402
Query: 1155 GSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 1214
L + + + G I VPQ GT+++ + + RE+A ++
Sbjct: 403 DELDVRTVKLKDLRGH---ISAVPQETVLFSGTIKENLKW--GREDA---------TDDE 448
Query: 1215 LVDTTNI--LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH 1272
+V+ I + ++ ++ EG Y E G + S G++QRL +AR
Sbjct: 449 IVEAAKIAQIHDFIISLPEG----YDSRVERGGRN--------FSGGQKQRLSIARALVK 496
Query: 1273 KPKFGILDECTNATSVDVEEQ----LYRLAKDMGITFVTSSQRP 1312
KPK ILD+CT++ E++ L R K TF+ + + P
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGC-TTFIITQKIP 539
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 16/195 (8%)
Query: 433 NGSRNYFSEANYIEFSGVKVVTPT-GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRV 490
+GS + ++F V P NV V + LT + PG + GPNGSGKS++ +
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 491 LGGLWPLVSGHI---AKPGVGSD---LNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVE 544
L L+ G + +P V D L+ ++ V Q P + R+ + Y LT +E
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTME 124
Query: 545 PLTHGGMVELLKNVDLEYLLDRYPP--EKEIN-WGDELSLGEQQRLGMARLFYHKPKFAI 601
+T M + + +P + E+ G++LS G++Q + +AR KP+ I
Sbjct: 125 EITAVAMESGAHD-----FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 602 LDECTSAVTTDMEER 616
LD TSA+ + R
Sbjct: 180 LDNATSALDAGNQLR 194
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 24/182 (13%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSL---TKPSQHIDEEAGSGCGIF 1175
LTF + PGK + GPNGSGKS+V +L+ L+ G + +P D +
Sbjct: 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHY-LHTQVA 96
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
V Q P + R+ I Y L+R E++ T ++S + G
Sbjct: 97 AVGQEPLLFGRSFRENIAYGLTRTPTM----------EEI--TAVAMESGAHDFISGFPQ 144
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
Y E E G + LS G++Q + +AR KP+ ILD T+A + ++
Sbjct: 145 GYDTEVGETG--------NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQ 196
Query: 1296 RL 1297
RL
Sbjct: 197 RL 198
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 21/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K Q NG R + S+ N + FS + +V GN +++N+ L +E G L ITG GSGK+S
Sbjct: 23 EKVQQSNGDRKHSSDENNVSFSHLCLV---GNPVLKNINLNIEKGEMLAITGSTGSGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G + + Q + GT+++ +I + +
Sbjct: 80 LLMLILGELEASEGIIKHSG-------RVSFCSQFSWIMPGTIKENIIGVSYDEYRYKS- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K L+ + ++ + G+ LS G++ R+ +AR Y +LD
Sbjct: 132 -------VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLD 184
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 57/231 (24%)
Query: 1071 ELLDAAQPGDDEISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSL 1129
ELL+ Q + G +H S+D ++++SFS L ++ P + + + I G+ L
Sbjct: 20 ELLEKVQQSN----GDRKH---SSD-ENNVSFSHLCLVGNP----VLKNINLNIEKGEML 67
Query: 1130 LVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLR 1189
+TG GSGK+S+ ++ G G + + + + Q + GT++
Sbjct: 68 AITGSTGSGKTSLLMLILGELEASEGIIKHSGR-----------VSFCSQFSWIMPGTIK 116
Query: 1190 DQII---YPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREEV 1244
+ II Y R ++ ++A +L K + N T+L GV LS
Sbjct: 117 ENIIGVSYDEYRYKSVVKACQLQQDITKFAEQDN-------TVLGEGGVTLSG------- 162
Query: 1245 GWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLY 1295
G++ R+ +AR + +LD V EEQ++
Sbjct: 163 --------------GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVF 199
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGSDLNKEIFYVP 519
V++L+L+++ G L++ GP+G GK++ R + GL G I + + +D K +F P
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 520 QRPYTAV----------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+ A T+ D + +PL QE++ E+ + + L LL+
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVR----EVAEXLGLTELLN 137
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 621
R P ELS G++QR+ + R +PK + DE S + + + A++
Sbjct: 138 RKP--------RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 622 RAMGTSCITISH 633
R +G + I ++H
Sbjct: 190 RQLGVTTIYVTH 201
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHI-DEEAGSGCGIF 1175
+ L+ EI G+ L++ GP+G GK++ R + GL G + + D E G
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKG-----V 77
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELR-ALKLHGKGEKLVDTTNILDSYLKTILEGVR 1234
+VP + + +YP + LKL ++ +D ++ + E +
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKR------VREVAEXLG 131
Query: 1235 LSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTNATS---VDV 1290
L+ LL R+ LS G++QR+ + R +PK + DE +N + V
Sbjct: 132 LTELLNRKPRE----------LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKX 181
Query: 1291 EEQLYRLAKDMGIT--FVTSSQRPA 1313
+L +L + +G+T +VT Q A
Sbjct: 182 RAELKKLQRQLGVTTIYVTHDQVEA 206
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 28/221 (12%)
Query: 445 IEFSGVKVVTP--TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI 502
IEFS V P T + ++++ + G+ + G GSGKS++ ++L + G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 503 AKPGVGSDLNKE--------IFYVPQRPYTAVGTLRDQLIYPL--TSDQEVEPLTHGGMV 552
K G G ++NK I VPQ T++ ++Y +D+EV +
Sbjct: 77 -KIG-GKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV--------I 126
Query: 553 ELLKNVDLEYLLDRYPPEKEI---NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
+ K+ L ++ P + + N G +LS GE+QR+ +AR PK I DE TS++
Sbjct: 127 KATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSL 186
Query: 610 TTDMEERFCAKVRAM--GTSCITISHRPALVAFHDVVLSLD 648
+ E F V + + I I+HR + ++ + ++ L+
Sbjct: 187 DSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLN 227
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 28/208 (13%)
Query: 1099 SISFSKLDIITPSQK--LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGS 1156
+I FS ++ P Q + + F I G + + G GSGKS++ ++L + G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 1157 LTKPSQHIDEEAGSGCG--IFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEK 1214
+ +++++ + I VPQ T++ I+Y KL E+
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYG-----------KLDATDEE 124
Query: 1215 LVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGMARLFFHK 1273
++ T + +L +E WD + + + LS GE+QR+ +AR
Sbjct: 125 VIKAT-----------KSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173
Query: 1274 PKFGILDECTNATSVDVEEQLYRLAKDM 1301
PK I DE T++ E + +D+
Sbjct: 174 PKIVIFDEATSSLDSKTEYLFQKAVEDL 201
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 16/237 (6%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSG 483
++ + + G R +EF V P V + N+ LK+ G + + G +GSG
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 484 KSSLFRVLGGLWPLVSGHIAKPG------VGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
KS++ ++ + + GHI G + L ++ V Q + T+ + + Y
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 538 TSDQEVEPLTHGG-MVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595
T + E + M + ++ ++ LD E G LS G++QR+ +AR
Sbjct: 442 TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGEN----GVLLSGGQRQRIAIARALLR 497
Query: 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHD-VVLSLDG 649
ILDE TSA+ T+ E A + + + + I+HR + + D +V+ DG
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDG 554
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 104/509 (20%), Positives = 199/509 (39%), Gaps = 74/509 (14%)
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK---SYLRKNSFYKVFNMSSK 856
+IG+ +L+ S + I ++ ++ + R R+ H++ ++ K S + +
Sbjct: 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS---- 126
Query: 857 SIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL 916
RIT+D E++ + SG + +V+ I+ M + Q + ++ ++ +
Sbjct: 127 ------RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSI 180
Query: 917 GFLRSVTPEFGDLTSREQQLEGTFRFMHER-LRAHAESVAFFGGGAREKAMIESRFREXX 975
+R V+ F ++ Q G E+ L+ H E V FGG E RF +
Sbjct: 181 A-IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKE-VLIFGGQEVET----KRFDKVS 234
Query: 976 XXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVS--TQGELAHALR 1033
D + + + L+L + + +++ T G +
Sbjct: 235 NKMRLQGMKMVSASSISDPIIQLIA-----SLALAFVLYAASFPSVMDSLTAGTI----- 284
Query: 1034 FLASVVSQSFLAFGDILE-LHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWN 1092
+VV S +A L+ L + G+ L +LD+ Q D+ G
Sbjct: 285 ---TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GKRVIDRA 338
Query: 1093 STDYQDSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151
+ D + F + P +++ A R + +I GK++ + G +GSGKS++ ++ +
Sbjct: 339 TGDLE----FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 1152 VVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP----LSREEAELRA 1205
+ G + + E A + V Q + T+ + I Y SRE+ E A
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAA 454
Query: 1206 LKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLG 1265
+ +D N +D+ L TI +G + L LS G++QR+
Sbjct: 455 RMAYA-----MDFINKMDNGLDTI--------------IGENGVL-----LSGGQRQRIA 490
Query: 1266 MARLFFHKPKFGILDECTNATSVDVEEQL 1294
+AR ILDE T+A + E +
Sbjct: 491 IARALLRDSPILILDEATSALDTESERAI 519
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 31/192 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI-AKPGVGSDLNKEIFYVP 519
V ++L+V+ G +++ GP+G GK++ R++ GL G I + +D K IF P
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 520 QRPYTAV----------GTLRDQLIYPL----TSDQEVEPLTHGGMVELLKNVDLEYLLD 565
+ A+ T+ D + +PL QE++ E+ + + L LL+
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR----EVAELLGLTELLN 134
Query: 566 RYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---- 621
R P ELS G++QR+ + R KP+ ++DE S + + R A++
Sbjct: 135 RKP--------RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 622 RAMGTSCITISH 633
R +G + I ++H
Sbjct: 187 RQLGVTTIYVTH 198
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 45/215 (20%)
Query: 1116 ARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIF 1175
R+++ E+ G+ +++ GP+G GK++ R++ GL G + + + A GIF
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV---ADPEKGIF 75
Query: 1176 YVPQRPYTCL----------GTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSY 1225
P+ + T+ D I +PL +LR + +D
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-----KLRKVPRQE-----------IDQR 119
Query: 1226 LKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTN 1284
++ + E + L+ LL R+ LS G++QR+ + R KP+ ++DE +N
Sbjct: 120 VREVAELLGLTELLNRK----------PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN 169
Query: 1285 ATS---VDVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ V + +L +L + +G+T +VT Q A+
Sbjct: 170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAM 204
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVP 519
++N+ L ++ G + I GP+GSGKS++ ++G L G + + + DL+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVE-PLT---HGGM---------VELLKNVDLEYLLDR 566
+R + LI LT+ + VE PL G M +E LK +LE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-- 624
+ P ++LS G+QQR+ +AR + P + D+ T A+ + E+ ++ +
Sbjct: 141 HKP-------NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNE 193
Query: 625 --GTSCITISHRPALVAFHDVVLSL-DGEGE 652
G + + ++H + F + ++ L DGE E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
Score = 34.3 bits (77), Expect = 0.51, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 37/225 (16%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ---HIDEEAGSGCG 1173
+ + I G+ + + GP+GSGKS++ ++ G L KP++ +ID +
Sbjct: 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNII--------GCLDKPTEGEVYIDNIKTNDLD 73
Query: 1174 IFYVPQRPYTCLGTLRDQI-IYPL--SREEAELRAL-KLHG--KGEKLVDTTNILDSYLK 1227
+ + +G + Q + PL + E EL + K G GE+ K
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE----------RRK 123
Query: 1228 TILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATS 1287
LE ++++ L ER AN + + LS G+QQR+ +AR + P + D+ T A
Sbjct: 124 RALECLKMAELEERF-----AN-HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALD 177
Query: 1288 VDVEEQLYRLAKDM----GITFVTSSQRPALIPFHSLELRLIDGE 1328
E++ +L K + G T V + + F + L DGE
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVP 519
++N+ L ++ G + I GP+GSGKS++ ++G L G + + + DL+ +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVE-PLT---HGGM---------VELLKNVDLEYLLDR 566
+R + LI LT+ + VE PL G M +E LK +LE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-- 624
+ P ++LS G+QQR+ +AR + P + D+ T A+ + E+ ++ +
Sbjct: 141 HKP-------NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE 193
Query: 625 --GTSCITISHRPALVAFHDVVLSL-DGEGE 652
G + + ++H + F + ++ L DGE E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 32/209 (15%)
Query: 445 IEFSGVKVVTPTGN-VLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIA 503
+E +V GN + N+ LK++ G + + GP+GSGKS+L + G++ SG I
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGM 551
K++ +P + VG T+ + +PL + +
Sbjct: 62 FD------EKDVTELPPKDRN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKV 114
Query: 552 VELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTT 611
E+ K + ++ LL+RYP W +LS G+QQR+ +AR +P+ +LDE S +
Sbjct: 115 REVAKMLHIDKLLNRYP------W--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 612 DMEERFCAKV----RAMGTSCITISHRPA 636
+ A++ + +G + + ++H A
Sbjct: 167 LLRLEVRAELKRLQKELGITTVYVTHDQA 195
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 93/205 (45%), Gaps = 35/205 (17%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDE--EAGSGCGIF 1175
+ +I G+ + + GP+GSGKS++ + G++ SG + + + E G+
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80
Query: 1176 YVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRL 1235
+ Y + T+ I +PL +A +D ++ + + + +
Sbjct: 81 FQNWALYPHM-TVYKNIAFPLELRKAPREE----------------IDKKVREVAKMLHI 123
Query: 1236 SYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE-CTNATS---VDVE 1291
LL R W+ LS G+QQR+ +AR +P+ +LDE +N + ++V
Sbjct: 124 DKLLNR--------YPWQ--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVR 173
Query: 1292 EQLYRLAKDMGIT--FVTSSQRPAL 1314
+L RL K++GIT +VT Q AL
Sbjct: 174 AELKRLQKELGITTVYVTHDQAEAL 198
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 110/494 (22%), Positives = 195/494 (39%), Gaps = 50/494 (10%)
Query: 176 RKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
++IV +L T F ++ +++ D R RL+SD ++E + D L A
Sbjct: 91 QRIVNRL-RTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQ 149
Query: 235 GLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLR 294
+ + + SP ++L+ V + + KL Q + QL
Sbjct: 150 ASV-GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERI 208
Query: 295 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGAT--VAVI 352
+ ++ +G KE + I++ + M++ + + + GAT +
Sbjct: 209 GNVRTVRAFG---KEMTEIEKYASKVDHVMQLARKEAFARA-------GFFGATGLSGNL 258
Query: 353 LIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADR 412
+++ + G L ++ + ++ S L Y V IS+ G G R
Sbjct: 259 IVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISI----GGLSSFYSELMKGLGAGGR 314
Query: 413 IHELMVISRELSIEDKSPQRNGS-RNYFSEANYIEFSGVKVVTPTGN--VLVENLTLKVE 469
+ EL L E K P G N S +EF V P + ++ +L +
Sbjct: 315 LWEL------LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIP 368
Query: 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--------LNKEIFYVPQR 521
GS + GP+GSGKS++ +L L+ SG I+ G D L +I V Q
Sbjct: 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG--HDIRQLNPVWLRSKIGTVSQE 426
Query: 522 PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE--- 578
P ++ + + Y V + E+ V + +P G++
Sbjct: 427 PILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF---IRNFPQGFNTVVGEKGVL 483
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAM-GTSCITISHR 634
LS G++QR+ +AR PK +LDE TSA+ D E + + R M G + + I+HR
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSAL--DAENEYLVQEALDRLMDGRTVLVIAHR 541
Query: 635 PALVAFHDVVLSLD 648
+ + ++V LD
Sbjct: 542 LSTIKNANMVAVLD 555
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 28/215 (13%)
Query: 1092 NSTDYQDSISFSKLDIITPSQKLLA--RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL 1149
N +Q ++ F + P++ + + + I G + GP+GSGKS+V +L L
Sbjct: 334 NEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393
Query: 1150 WPVVSGSLTKPSQHIDE--EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 1207
+ SG+++ I + I V Q P ++ + I Y
Sbjct: 394 YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD---------- 443
Query: 1208 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGM 1266
D +++ ++ + E + G++ + + + LS G++QR+ +
Sbjct: 444 ---------DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 494
Query: 1267 ARLFFHKPKFGILDECTNATSVD----VEEQLYRL 1297
AR PK +LDE T+A + V+E L RL
Sbjct: 495 ARALLKNPKILLLDEATSALDAENEYLVQEALDRL 529
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 16/237 (6%)
Query: 425 IEDKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNV-LVENLTLKVEPGSNLLITGPNGSG 483
++ + + G R +EF V P +V + N+ LK+ G + + G +GSG
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 484 KSSLFRVLGGLWP------LVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPL 537
KS++ ++ + L+ GH + + L ++ V Q + T+ + + Y
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 538 TSDQEVEPLTHGG-MVELLKNVD-LEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYH 595
T E + M + ++ ++ LD E G LS G++QR+ +AR
Sbjct: 442 TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGEN----GVLLSGGQRQRIAIARALLR 497
Query: 596 KPKFAILDECTSAVTTDMEERFCAKVRAM--GTSCITISHRPALVAFHD-VVLSLDG 649
ILDE TSA+ T+ E A + + + + I+HR + + D +V+ DG
Sbjct: 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDG 554
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 104/511 (20%), Positives = 200/511 (39%), Gaps = 78/511 (15%)
Query: 800 LIGVSVLQSAASSFIAPSIRHLTARLALGWRIRMTQHLLK---SYLRKNSFYKVFNMSSK 856
+IG+ +L+ S + I ++ ++ + R R+ H++ S+ K S + +
Sbjct: 71 VIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS---- 126
Query: 857 SIDADQRITHDLEKLTTDLSGLVTGMVKPSVDILWFTWRMKALTGQRGVAILYAYMLLGL 916
RIT+D E++ + SG + +V+ I+ M + Q + ++ ++ +
Sbjct: 127 ------RITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSI 180
Query: 917 GFLRSVTPEFGDLTSREQQLEGTFRFMHER-LRAHAESVAFFGGGAREKAMIESRFREXX 975
+R V+ F +++ Q G E+ L+ H E V FGG E RF +
Sbjct: 181 A-IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKE-VLIFGGQEVET----KRFDKVS 234
Query: 976 XXXXXXXXXXXXXXXXDDFVTKQLPHNVTWGLSLLYAMEHKGDRALVS--TQGELAHALR 1033
D + + + L+L + + +++ T G +
Sbjct: 235 NRMRLQGMKMVSASSISDPIIQLIA-----SLALAFVLYAASFPSVMDSLTAGTI----- 284
Query: 1034 FLASVVSQSFLAFGDILE-LHRKFVELSGGINRIFELEELLDAAQPGDDEISGSSQHKWN 1092
+VV S +A L+ L + G+ L +LD+ Q D+ G +
Sbjct: 285 ---TVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDE---GKRVIERA 338
Query: 1093 STDYQDSISFSKLDIITPSQKLLA-RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151
+ D + F + P + + A R + +I GK++ + G +GSGKS++ ++ +
Sbjct: 339 TGD----VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394
Query: 1152 VVSGSLTKPSQHIDEE--AGSGCGIFYVPQRPYTCLGTLRDQIIYP----LSREEAELRA 1205
+ G + + E A + V Q + T+ + I Y SRE+ E A
Sbjct: 395 IDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAA 454
Query: 1206 LKLHGKGEKLVDTTNILDSYLKTIL--EGVRLSYLLEREEVGWDANLNWEDILSLGEQQR 1263
+ +D N +D+ L T++ GV +LS G++QR
Sbjct: 455 RMAYA-----MDFINKMDNGLDTVIGENGV---------------------LLSGGQRQR 488
Query: 1264 LGMARLFFHKPKFGILDECTNATSVDVEEQL 1294
+ +AR ILDE T+A + E +
Sbjct: 489 IAIARALLRDSPILILDEATSALDTESERAI 519
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 96/211 (45%), Gaps = 26/211 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGS-DLNKEIFYVP 519
++N+ L ++ G + I GP+GSGKS+ ++G L G + + + DL+ +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 520 QRPYTAVGTLRDQLIYPLTSDQEVE-PLT------------HGGMVELLKNVDLEYLLDR 566
+R + LI LT+ + VE PL +E LK +LE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 567 YPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM-- 624
+ P ++LS G+QQR+ +AR + P + DE T A+ + E+ ++ +
Sbjct: 141 HKP-------NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNE 193
Query: 625 --GTSCITISHRPALVAFHDVVLSL-DGEGE 652
G + + ++H + F + ++ L DGE E
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVE 224
Score = 33.5 bits (75), Expect = 0.88, Method: Composition-based stats.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 33/223 (14%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQ---HIDEEAGSGCG 1173
+ + I G+ + + GP+GSGKS+ ++ G L KP++ +ID +
Sbjct: 22 KNVNLNIKEGEFVSIXGPSGSGKSTXLNII--------GCLDKPTEGEVYIDNIKTNDLD 73
Query: 1174 IFYVPQRPYTCLGTLRDQI-IYPL--SREEAELRAL-KLHGKGEKLVDTTNILDSYLKTI 1229
+ + +G + Q + PL + E EL + K G + K
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSG--------EERRKRA 125
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1289
LE ++ + L ER AN + + LS G+QQR+ +AR + P + DE T A
Sbjct: 126 LECLKXAELEERF-----AN-HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSK 179
Query: 1290 VEEQLYRLAKDM----GITFVTSSQRPALIPFHSLELRLIDGE 1328
E++ +L K + G T V + + F + L DGE
Sbjct: 180 TGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 108/492 (21%), Positives = 193/492 (39%), Gaps = 46/492 (9%)
Query: 176 RKIVTKLIHTRYFENMAYYKISHVDG-RITHPEQRLASDVPRFCSELSELVQDDLTAVTD 234
++IV +L T F ++ +++ D R RL+SD ++E + D L A
Sbjct: 122 QRIVNRL-RTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQ 180
Query: 235 GLLYTWRLCSYASPKYVFWILAYVLGAGTMMRNFSPAFGKLMSKEQQLEGEYRQLHSRLR 294
+ + + SP ++L+ V + + KL Q + QL
Sbjct: 181 ASV-GISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERI 239
Query: 295 THAESIAFYGGENKEESHIQQKFKALTRHMRVVLHDHWWFGMIQDFLLKYLGAT--VAVI 352
+ ++ +G KE + I++ + M++ + + + GAT +
Sbjct: 240 GNVRTVRAFG---KEMTEIEKYASKVDHVMQLARKEAFARA-------GFFGATGLSGNL 289
Query: 353 LIIEPFFAGNLKPDTSTLGRAKMLSNLRYHTSVIISLFQSLGTXXXXXXXXXXXXGYADR 412
+++ + G L ++ + ++ S L Y V IS+ G G R
Sbjct: 290 IVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISI----GGLSSFYSELMKGLGAGGR 345
Query: 413 IHELMVISRELSIEDKSPQRNGS-RNYFSEANYIEFSGVKVVTPTGN--VLVENLTLKVE 469
+ EL L E K P G N S +EF V P + ++ +L +
Sbjct: 346 LWEL------LEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIP 399
Query: 470 PGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD------LNKEIFYVPQRPY 523
GS + GP+GSGKS++ +L L+ SG I+ G L +I V Q P
Sbjct: 400 SGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPI 459
Query: 524 TAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE---LS 580
++ + + Y V + E+ V + +P G++ LS
Sbjct: 460 LFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAF---IRNFPQGFNTVVGEKGVLLS 516
Query: 581 LGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAM-GTSCITISHRPA 636
G++QR+ +AR PK +LDE TSA+ D E + + R M G + + I+H +
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSAL--DAENEYLVQEALDRLMDGRTVLVIAHHLS 574
Query: 637 LVAFHDVVLSLD 648
+ ++V LD
Sbjct: 575 TIKNANMVAVLD 586
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 28/215 (13%)
Query: 1092 NSTDYQDSISFSKLDIITPSQKLLA--RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL 1149
N +Q ++ F + P++ + + + I G + GP+GSGKS+V +L L
Sbjct: 365 NEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 424
Query: 1150 WPVVSGSLTKPSQHIDE--EAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALK 1207
+ SG+++ I + I V Q P ++ + I Y
Sbjct: 425 YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGAD---------- 474
Query: 1208 LHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDI-LSLGEQQRLGM 1266
D +++ ++ + E + G++ + + + LS G++QR+ +
Sbjct: 475 ---------DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAI 525
Query: 1267 ARLFFHKPKFGILDECTNATSVD----VEEQLYRL 1297
AR PK +LDE T+A + V+E L RL
Sbjct: 526 ARALLKNPKILLLDEATSALDAENEYLVQEALDRL 560
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 91/192 (47%), Gaps = 31/192 (16%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V+ ++ +V+ G + + GP+G GK++ +L G++ SG I V + +P
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVN------DIPP 72
Query: 521 RPYTAVG------------TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYP 568
+ Y VG T+ + + +PL + + + +VE+ + + ++ LLDR P
Sbjct: 73 K-YREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP 131
Query: 569 PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR----AM 624
+LS G+QQR+ +AR +PK + DE S + ++ A+++ +
Sbjct: 132 --------TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 625 GTSCITISHRPA 636
G + + ++H A
Sbjct: 184 GITSVYVTHDQA 195
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 45/209 (21%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGS--GCGIFY 1176
++FE+ G+ + + GP+G GK++ +L G++ SG + +++ G+ +
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 1177 VPQRPYTCLGTLRDQIIYPL-----SREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
Y + T+ + I +PL S++E E R +++ K L+D
Sbjct: 82 QNYALYPHM-TVFENIAFPLRARRISKDEVEKRVVEIARK--LLIDN------------- 125
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD-- 1289
LL+R+ LS G+QQR+ +AR +PK + DE + +
Sbjct: 126 ------LLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1290 --VEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ ++ L +++GIT +VT Q A+
Sbjct: 170 MIMRAEIKHLQQELGITSVYVTHDQAEAM 198
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 19/204 (9%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG------SDLNKE 514
+ +++ + G + + G +GSGKS++ + + + SG I G ++L +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 515 IFYVPQRPYTAVGTLRDQLIYP----LTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
V Q + T+ + + Y T +Q + +E ++N + LD E
Sbjct: 419 FALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIEN--MPQGLDTVIGE 476
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM--GTSC 628
G LS G++QR+ +AR ILDE TSA+ T+ E A + + +
Sbjct: 477 N----GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTV 532
Query: 629 ITISHRPALVAFHDVVLSLDGEGE 652
+ I+HR + + D +L +D EGE
Sbjct: 533 LVIAHRLSTIEQADEILVVD-EGE 555
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 30/183 (16%)
Query: 1118 QLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY- 1176
++F I GK++ + G +GSGKS++ + + V SGS+ + + + +
Sbjct: 361 HVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420
Query: 1177 -VPQRPYTCLGTLRDQIIYP----LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
V Q + T+ + I Y +RE+ E A + H E + + LD+ +
Sbjct: 421 LVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAM-EFIENMPQGLDTVIG---- 475
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
E G LS G++QR+ +AR ILDE T+A + E
Sbjct: 476 -----------ENGTS--------LSGGQRQRVAIARALLRDAPVLILDEATSALDTESE 516
Query: 1292 EQL 1294
+
Sbjct: 517 RAI 519
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG 1173
++++ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1174 IFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
+ V + +YP LS E LKL G ++ +++ + + E
Sbjct: 77 VGMV----------FQSYALYPHLSVAENMSFGLKLAGAKKE------VINQRVNQVAEV 120
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1288
++L++LL+R+ LS G++QR+ + R +P +LDE + A V
Sbjct: 121 LQLAHLLDRK----------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1289 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ ++ RL K +G T +VT Q A+
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAM 198
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G V+V +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ GVG Y P+ +V + + + L + + + + ++ + + L +L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCA 619
LDR P LS G++QR+ + R +P +LDE S A+ M
Sbjct: 127 LDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178
Query: 620 KVRAMGTSCITISH 633
+ +G + I ++H
Sbjct: 179 LHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG 1173
++++ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1174 IFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
+ V + +YP LS E LKL G ++ +++ + + E
Sbjct: 77 VGMV----------FQSYALYPHLSVAENMSFGLKLAGAKKE------VINQRVNQVAEV 120
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1288
++L++LL+R+ LS G++QR+ + R +P +LDE + A V
Sbjct: 121 LQLAHLLDRK----------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1289 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ ++ RL K +G T +VT Q A+
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAM 198
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G V+V +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ GVG Y P+ +V + + + L + + + + ++ + + L +L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCA 619
LDR P LS G++QR+ + R +P +LDE S A+ M
Sbjct: 127 LDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178
Query: 620 KVRAMGTSCITISH 633
+ +G + I ++H
Sbjct: 179 LHKRLGRTMIYVTH 192
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 24/223 (10%)
Query: 456 TGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD---LN 512
G+ +++++ + E G ++ G NGSGK++L ++L GL +G I G +D L
Sbjct: 22 NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA-AAGEIFLDGSPADPFLLR 80
Query: 513 KEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL-LDRYPP 569
K + YV Q P + + T+ + + + L E+ L M + +K V LE + L
Sbjct: 81 KNVGYVFQNPSSQIIGATVEEDVAFSL----EIMGLDESEMRKRIKKV-LELVGLSGLAA 135
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM---GT 626
+N LS G++QRL +A + +F LDE S + + + ++ G
Sbjct: 136 ADPLN----LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGK 191
Query: 627 SCITISHRPALVAFHDVVL-----SLDGEGEWRVHDKRDGSSV 664
I ++H + D +L ++D G W +R+ V
Sbjct: 192 GIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDV 234
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPV-----VSGSLTKPSQHIDEEAGSG 1171
+ + E GK +V G NGSGK+++ ++L GL + GS P + + G
Sbjct: 28 KDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPADPF-LLRKNVG-- 84
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
YV Q P + QII E+ +L++ G E + + +K +LE
Sbjct: 85 ----YVFQNPSS-------QIIGATVEEDVAF-SLEIMGLDE------SEMRKRIKKVLE 126
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVE 1291
V LS L + + LS G++QRL +A + +F LDE + +
Sbjct: 127 LVGLSGLAAADPLN----------LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 1292 EQLYRLAKDM-----GITFVT 1307
+++++ + + GI VT
Sbjct: 177 REIFQVLESLKNEGKGIILVT 197
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 100/208 (48%), Gaps = 33/208 (15%)
Query: 1114 LLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCG 1173
++++ + +I G+ ++ GP+G GKS++ R++ GL + SG L + +++ + G
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERG 76
Query: 1174 IFYVPQRPYTCLGTLRDQIIYP-LSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
+ V + +YP LS E LKL G ++ +++ + + E
Sbjct: 77 VGMV----------FQSYALYPHLSVAENMSFGLKLAGAKKE------VINQRVNQVAEV 120
Query: 1233 VRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTN----ATSV 1288
++L++LL+R+ LS G++QR+ + R +P +LD+ + A V
Sbjct: 121 LQLAHLLDRK----------PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRV 170
Query: 1289 DVEEQLYRLAKDMGIT--FVTSSQRPAL 1314
+ ++ RL K +G T +VT Q A+
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAM 198
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 32/194 (16%)
Query: 457 GNVLV-ENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI------------A 503
G V+V +++ L + G ++ GP+G GKS+L R++ GL + SG + A
Sbjct: 14 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA 73
Query: 504 KPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYL 563
+ GVG Y P+ +V + + + L + + + + ++ + + L +L
Sbjct: 74 ERGVGMVFQSYALY----PHLSVA---ENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 564 LDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTS----AVTTDMEERFCA 619
LDR P LS G++QR+ + R +P +LD+ S A+ M
Sbjct: 127 LDRKP--------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISR 178
Query: 620 KVRAMGTSCITISH 633
+ +G + I ++H
Sbjct: 179 LHKRLGRTMIYVTH 192
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 37/216 (17%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +++ ++L V+ G + I G +GSGKS+L +LG L G + G KE+
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG------KEVD 69
Query: 517 YVPQRPYTAVGTLRDQ----------LIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLD 565
Y ++ + LR++ LI LT+ + + P+ G + EYLL
Sbjct: 70 YTNEKELS---LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLS 126
Query: 566 RYPPEKEINWGD-------ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFC 618
E+ GD ELS GEQQR+ +AR ++P DE T + + +R
Sbjct: 127 ------ELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVM 180
Query: 619 ---AKVRAMGTSCITISHRPALVAFHDVVLSL-DGE 650
K+ GTS + ++H L L + DG+
Sbjct: 181 DIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGK 216
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 19/161 (11%)
Query: 454 TPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSD--- 510
T GN ++EN++ + PG + + G GSGKS+L L G I GV D
Sbjct: 30 TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSIT 88
Query: 511 ---LNKEIFYVPQRPYTAVGTLRDQL-IYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDR 566
K +PQ+ + GT R L SDQE+ ++ V L ++++
Sbjct: 89 LEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEI--------WKVADEVGLRSVIEQ 140
Query: 567 YPPEKE---INWGDELSLGEQQRLGMARLFYHKPKFAILDE 604
+P + + ++ G LS G +Q + +AR K K +LDE
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 181
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N +R + + + FS ++ G +++++ K+E G L + G G+GK+S
Sbjct: 23 EKAKQNNNNRKTSNGDDSLSFSNFSLL---GTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G I + Q + GT+++ +I ++ D+
Sbjct: 80 LLMMIMGELEPSEGKIKHSG-------RISFCSQFSWIMPGTIKENIIAGVSYDEYR--- 129
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K LE + ++ + I G+ LS G++ R+ +AR Y +LD
Sbjct: 130 ----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 185
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 1082 EISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKS 1140
E + + + +++ DS+SFS ++ TP + + + F+I G+ L V G G+GK+
Sbjct: 23 EKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKT 78
Query: 1141 SVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREE 1200
S+ ++ G +PS+ + +G I + Q + GT+++ II +S +E
Sbjct: 79 SLLMMIMGEL--------EPSEGKIKHSGR---ISFCSQFSWIMPGTIKENIIAGVSYDE 127
Query: 1201 ----AELRALKLHGKGEKLVDTTNIL 1222
+ ++A +L K + NI+
Sbjct: 128 YRYRSVIKACQLEEDISKFAEKDNIV 153
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 93/215 (43%), Gaps = 27/215 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+ +T + G+ + + G G GKSSL L V GH+A G + YVPQ
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------SVAYVPQ 73
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLL--DRYP-PEKEINWGD 577
+ + +LR+ +++ Q EP + DLE L DR EK +N
Sbjct: 74 QAWIQNDSLRENILFGC---QLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN--- 127
Query: 578 ELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV---RAM--GTSCITIS 632
LS G++QR+ +AR Y + D+ SAV + + V + M + I ++
Sbjct: 128 -LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 633 HRPALVAFHDVVLSLDGE-----GEWRVHDKRDGS 662
H + + DV++ + G G ++ RDG+
Sbjct: 187 HSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGA 221
Score = 38.1 bits (87), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 33/178 (18%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVP 1178
+TF I G + V G G GKSS+ L V G H+ + + YVP
Sbjct: 24 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-------HVAIKG----SVAYVP 72
Query: 1179 QRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYL 1238
Q+ + +LR+ I++ EE R++ + L+ IL S
Sbjct: 73 QQAWIQNDSLRENILFGCQLEEPYYRSVI---QACALLPDLEILPSG------------- 116
Query: 1239 LEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
+R E+G + +N LS G++QR+ +AR + + D+ +A V + ++
Sbjct: 117 -DRTEIG-EKGVN----LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 15 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 75 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 132 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+HR + V D ++ ++
Sbjct: 186 KICKGRTVIIIAHRLSTVKNADRIIVME 213
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 73 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 130 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+HR + V D ++ ++
Sbjct: 184 KICKGRTVIIIAHRLSTVKNADRIIVME 211
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 79 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 136 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+HR + V D ++ ++
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVME 217
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G GSGKS+L +++ + L+ GH +A P
Sbjct: 15 PDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 74
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 75 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 132 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+HR + V D ++ ++
Sbjct: 186 KICKGRTVIIIAHRLSTVKNADRIIVME 213
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 142 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 182
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 20/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N +R +N + ++ G +++++ K+E G L + G G+GK+S
Sbjct: 23 EKAKQNNNNRKT---SNGDDSLSFSNLSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G I + Q + GT+++ +I+ ++ D+
Sbjct: 80 LLMMIMGELEPSEGKIKHSG-------RISFCSQFSWIMPGTIKENIIFGVSYDEYR--- 129
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K LE + ++ + I G+ LS G+Q ++ +AR Y +LD
Sbjct: 130 ----YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLD 185
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G +PS+ + +G I +
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKHSGR---ISF 103
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREE----AELRALKLHGKGEKLVDTTNIL 1222
Q + GT+++ II+ +S +E + ++A +L K + NI+
Sbjct: 104 CSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 153
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 79 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I D+ TSA+ + E +
Sbjct: 136 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+HR + V D ++ ++
Sbjct: 190 KICKGRTVIIIAHRLSTVKNADRIIVME 217
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I D+ T+A + E + R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMR 186
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N +R + + + FS ++ G +++++ K+E G L + G G+GK+S
Sbjct: 23 EKAKQNNNNRKTSNGDDSLSFSNFSLL---GTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G I + Q + GT+++ +I +
Sbjct: 80 LLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRS- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K LE + ++ + I G+ LS G++ R+ +AR Y +LD
Sbjct: 132 -------VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 19/145 (13%)
Query: 1082 EISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKS 1140
E + + + +++ DS+SFS ++ TP + + + F+I G+ L V G G+GK+
Sbjct: 23 EKAKQNNNNRKTSNGDDSLSFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKT 78
Query: 1141 SVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII---YPLS 1197
S+ ++ G +PS+ + +G I + Q + GT+++ II Y
Sbjct: 79 SLLMMIMGEL--------EPSEGKIKHSGR---ISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 1198 REEAELRALKLHGKGEKLVDTTNIL 1222
R + ++A +L K + NI+
Sbjct: 128 RYRSVIKACQLEEDISKFAEKDNIV 152
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +++++ K+E G L + G G+GK+SL ++ G G I G I
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RIS 72
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ Q + GT+++ +I+ ++ D+ ++K LE + ++ + I G
Sbjct: 73 FCSQFSWIMPGTIKENIIFGVSYDEYR-------YRSVIKACQLEEDISKFAEKDNIVLG 125
Query: 577 D---ELSLGEQQRLGMARLFYHKPKFAILD 603
+ LS G++ R+ +AR Y +LD
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLD 155
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G +PS+ + +G I +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKHSGR---ISF 73
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREE----AELRALKLHGKGEKLVDTTNIL 1222
Q + GT+++ II+ +S +E + ++A +L K + NI+
Sbjct: 74 CSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 123
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V L L ++ G L++ GP+G GK++ R++ GL G I G ++++ Y+P
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FG---DRDVTYLPP 80
Query: 521 R--------------PYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEY 562
+ P+ T+ + + +PL E++ ELL+ +E
Sbjct: 81 KDRNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWA-AELLQ---IEE 133
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
LL+RYP +LS G++QR+ +AR +P ++DE S + + A+++
Sbjct: 134 LLNRYPA--------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 185
Query: 623 ----AMGTSCITISH 633
+ + I ++H
Sbjct: 186 KLQQKLKVTTIYVTH 200
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
V L L ++ G L++ GP+G GK++ R++ GL G I G ++++ Y+P
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY---FG---DRDVTYLPP 81
Query: 521 R--------------PYTAVGTLRDQLIYPLT----SDQEVEPLTHGGMVELLKNVDLEY 562
+ P+ T+ + + +PL E++ ELL+ +E
Sbjct: 82 KDRNISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDEIDKRVRWA-AELLQ---IEE 134
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
LL+RYP +LS G++QR+ +AR +P ++DE S + + A+++
Sbjct: 135 LLNRYPA--------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIK 186
Query: 623 ----AMGTSCITISH 633
+ + I ++H
Sbjct: 187 KLQQKLKVTTIYVTH 201
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 78/180 (43%), Gaps = 21/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N +R + + + FS ++ G +++++ K+E G L + G G+GK+S
Sbjct: 23 EKAKQNNNNRKTSNGDDSLFFSNFSLL---GTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G I + Q + GT+++ +I +
Sbjct: 80 LLMMIMGELEPSEGKIKHSG-------RISFCSQNSWIMPGTIKENIIGVSYDEYRYRS- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K LE + ++ + I G+ LS G++ R+ +AR Y +LD
Sbjct: 132 -------VIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 184
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 1082 EISGSSQHKWNSTDYQDSISFSKLDII-TPSQKLLARQLTFEIVPGKSLLVTGPNGSGKS 1140
E + + + +++ DS+ FS ++ TP + + + F+I G+ L V G G+GK+
Sbjct: 23 EKAKQNNNNRKTSNGDDSLFFSNFSLLGTP----VLKDINFKIERGQLLAVAGSTGAGKT 78
Query: 1141 SVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTCLGTLRDQII---YPLS 1197
S+ ++ G +PS+ + +G I + Q + GT+++ II Y
Sbjct: 79 SLLMMIMGEL--------EPSEGKIKHSGR---ISFCSQNSWIMPGTIKENIIGVSYDEY 127
Query: 1198 REEAELRALKLHGKGEKLVDTTNIL 1222
R + ++A +L K + NI+
Sbjct: 128 RYRSVIKACQLEEDISKFAEKDNIV 152
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 17/150 (11%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +++++ K+E G L + G G+GK+SL ++ G G I G I
Sbjct: 32 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RIS 84
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ Q + GT+++ +I+ ++ D+ ++K LE + ++ + I G
Sbjct: 85 FCSQFSWIMPGTIKENIIFGVSYDEYR-------YRSVIKACQLEEDISKFAEKDNIVLG 137
Query: 577 D---ELSLGEQQRLGMARLFYHKPKFAILD 603
+ LS G++ R+ +AR Y +LD
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLD 167
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G +PS+ + +G I +
Sbjct: 37 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKHSGR---ISF 85
Query: 1177 VPQRPYTCLGTLRDQIIYPLSREE----AELRALKLHGKGEKLVDTTNIL 1222
Q + GT+++ II+ +S +E + ++A +L K + NI+
Sbjct: 86 CSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 135
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 72
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 73 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 130 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+ R + V D ++ ++
Sbjct: 184 KICKGRTVIIIAARLSTVKNADRIIVME 211
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 23/208 (11%)
Query: 455 PTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLW------PLVSGH---IAKP 505
P V+++N+ L ++ G + I G +GSGKS+L +++ + L+ GH +A P
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP 78
Query: 506 GVGSDLNKEIFYVPQRPYTAVGTLRDQ--LIYP-LTSDQEVEPLTHGGMVELLKNVDLEY 562
L +++ V Q ++ D L P ++ ++ + G + + + Y
Sbjct: 79 NW---LRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
+ E+ G LS G++QR+ +AR + PK I DE TSA+ + E +
Sbjct: 136 --NTIVGEQ----GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 623 AM--GTSCITISHRPALVAFHDVVLSLD 648
+ G + I I+ R + V D ++ ++
Sbjct: 190 KICKGRTVIIIAARLSTVKNADRIIVME 217
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYR 1296
LS G++QR+ +AR + PK I DE T+A + E + R
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 186
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 29/185 (15%)
Query: 466 LKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
L+VEPG + I GPNG GK++ + L G+ G I + + + Y PQ
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKI-------EWDLTVAYKPQ 354
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM-VELLKNVDLEYLLDRYPPEKEINWGDEL 579
+ + +Y L S + L ELLK + + L DR E+N EL
Sbjct: 355 ----YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDR-----EVN---EL 402
Query: 580 SLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVA 639
S GE QR+ +A +LDE ++ + D+E+R RA+ + + ALV
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRLAVS-RAI-RHLXEKNEKTALVV 458
Query: 640 FHDVV 644
HDV+
Sbjct: 459 EHDVL 463
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 43/228 (18%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVSGH------IAKPGVGSDL--------N 512
V+ G + I GPNG+GKS+ ++L G L P + G + + G++L N
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 513 KEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
EI V + Y + ++ ++I L E G + E++K ++LE +L+R
Sbjct: 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKKADET-----GKLEEVVKALELENVLER---- 154
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCA-----KVRAMG 625
EI LS GE QR+ +A F DE +S + D+ +R A ++ G
Sbjct: 155 -EIQ---HLSGGELQRVAIAAALLRNATFYFFDEPSSYL--DIRQRLNAARAIRRLSEEG 208
Query: 626 TSCITISHRPALVAF-HDVVLSLDGE-GEWRVHDKRDGSSVVTKSGIN 671
S + + H A++ + D++ + GE G + + + G T++GIN
Sbjct: 209 KSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKG----TRNGIN 252
Score = 30.0 bits (66), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 82/197 (41%), Gaps = 27/197 (13%)
Query: 1126 GKSLLVTGPNGSGKSSVFRVLRG-LWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRPYTC 1184
G + + GPNG+GKS+ ++L G L P + G D ++ G +
Sbjct: 47 GXVVGIVGPNGTGKSTAVKILAGQLIPNLCG---------DNDSWDGVIRAFRGNELQNY 97
Query: 1185 LGTLRDQIIYPLSREE-AELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLEREE 1243
L++ I P+ + + +L + GK +L+ + L+ +++ + L +LERE
Sbjct: 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK-LEEVVKALELENVLERE- 155
Query: 1244 VGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAKDMGI 1303
LS GE QR+ +A F DE + + +D+ + RL I
Sbjct: 156 ---------IQHLSGGELQRVAIAAALLRNATFYFFDEPS--SYLDIRQ---RLNAARAI 201
Query: 1304 TFVTSSQRPALIPFHSL 1320
++ + L+ H L
Sbjct: 202 RRLSEEGKSVLVVEHDL 218
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 29/168 (17%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
L+ +++L + G + I GPNG+GKS+L R+L G L H +G +LN +
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY--LSPSHGECHLLGQNLNS---W 78
Query: 518 VPQRPYTAVGTLRD--QLIYPLTSDQEVE--PLTHGG------MVELLKNVDLEYLLDRY 567
P+ +R +L +P + + ++ +GG + +++ D L R
Sbjct: 79 QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR- 137
Query: 568 PPEKEINWGDELSLGEQQRLGMARLFYH------KPKFAILDECTSAV 609
+ + LS GEQQR+ +AR+ P++ LDE TSA+
Sbjct: 138 --DYRV-----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSAL 178
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 31/196 (15%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
Q+ L ++ I G+ + + GPNG+GKS++ R+L G G Q+++
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKA 82
Query: 1172 CGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILE 1231
R Y+ ++ +P S E +G + L+ ++
Sbjct: 83 LARTRAVMRQYS-------ELAFPFSVSEVIQMGRAPYGGSQD--------RQALQQVMA 127
Query: 1232 GVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFH------KPKFGILDECTNA 1285
L +R+ +LS GEQQR+ +AR+ P++ LDE T+A
Sbjct: 128 QTDCLALAQRD----------YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA 177
Query: 1286 TSVDVEEQLYRLAKDM 1301
+ ++ RL + +
Sbjct: 178 LDLYHQQHTLRLLRQL 193
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 53/207 (25%), Positives = 85/207 (41%), Gaps = 42/207 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-NKE----- 514
++ +++ V G LI GPNGSGKS+L V+ G G + D+ NKE
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE--NKDITNKEPAELY 80
Query: 515 ------IFYVPQRPYTAVGTLRDQLI-------YPLTS-------DQEVEPLTHGGMVEL 554
F PQ P + L + LI PL S +E E + ++
Sbjct: 81 HYGIVRTFQTPQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA--FKI 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
L+ + L +L DR ELS G+ + + + R PK ++DE + V +
Sbjct: 138 LEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 615 E---RFCAKVRAMGTSCITISHRPALV 638
+++A G + + I HR +V
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIV 216
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 87/205 (42%), Gaps = 30/205 (14%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---GI- 1174
++ + G L+ GPNGSGKS++ V+ G G + ++ I + + GI
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 1175 --FYVPQRPYTCLGTLRDQIIYPLSREEAELRAL---KLHGKGEKLVDTTNILDSYLKTI 1229
F PQ P + L + +I + E+ L +L K K E++V+ I
Sbjct: 86 RTFQTPQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF-------KI 137
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1289
LE ++LS+L +R+ LS G+ + + + R PK ++DE +
Sbjct: 138 LEFLKLSHLYDRK----------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 1290 VEEQLYRLA---KDMGITFVTSSQR 1311
+ ++ K GITF+ R
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 30/205 (14%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---GI- 1174
++ + G L+ GPNGSGKS++ V+ G G + ++ I + + GI
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 1175 --FYVPQRPYTCLGTLRDQIIYPLSREEAELRAL---KLHGKGEKLVDTTNILDSYLKTI 1229
F PQ P + L + +I ++ E+ L +L K K E++V+ I
Sbjct: 86 RTFQTPQ-PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF-------KI 137
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1289
LE ++LS+L +R+ LS G+ + + + R PK ++DE +
Sbjct: 138 LEFLKLSHLYDRK----------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 187
Query: 1290 VEEQLYRLA---KDMGITFVTSSQR 1311
+ ++ K GITF+ R
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHR 212
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 42/207 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-NKE----- 514
++ +++ V G LI GPNGSGKS+L V+ G G + D+ NKE
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE--NKDITNKEPAELY 80
Query: 515 ------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLT----------HGGMVE----L 554
F PQ P + L + LI + + PL MVE +
Sbjct: 81 HYGIVRTFQTPQ-PLKEMTVLENLLIGEINPGE--SPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
L+ + L +L DR ELS G+ + + + R PK ++DE + V +
Sbjct: 138 LEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 615 E---RFCAKVRAMGTSCITISHRPALV 638
+++A G + + I HR +V
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIV 216
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
++ + LKV G + + G NG+GK++ + GL G I G D+ + +V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN--GQDITNKPAHVIN 79
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKE--INWGDE 578
R A+ ++ LT + + + + DLE++ +P KE G
Sbjct: 80 RXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 139
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDE 604
LS GEQQ L + R +PK DE
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDE 165
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 21/180 (11%)
Query: 427 DKSPQRNGSRNYFSEANYIEFSGVKVVTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSS 486
+K+ Q N +R +N + ++ G +++++ K+E G L + G G+GK+S
Sbjct: 23 EKAKQNNNNRKT---SNGDDSLSFSNLSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTS 79
Query: 487 LFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPL 546
L ++ G G I G I + Q + GT+++ +I +
Sbjct: 80 LLMMIMGELEPSEGKIKHSG-------RISFCSQFSWIMPGTIKENIIGVSYDEYRYRS- 131
Query: 547 THGGMVELLKNVDLEYLLDRYPPEKEINWGD---ELSLGEQQRLGMARLFYHKPKFAILD 603
++K LE + ++ + I G+ LS G+Q ++ +AR Y +LD
Sbjct: 132 -------VIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLD 184
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G +PS+ + +G I +
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKHSGR---ISF 103
Query: 1177 VPQRPYTCLGTLRDQII---YPLSREEAELRALKLHGKGEKLVDTTNIL 1222
Q + GT+++ II Y R + ++A +L K + NI+
Sbjct: 104 CSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 152
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 77/175 (44%), Gaps = 14/175 (8%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYVP 519
+EN+ L+V G ++I GPNGSGK++L R + GL P SG+I G+ + I Y
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY-SGNIFINGMEVRKIRNYIRYST 78
Query: 520 QRPYT-AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDE 578
P +G + ++Y +E++ L +E+LK + L + R K
Sbjct: 79 NLPEAYEIGVTVNDIVYLY---EELKGLDRDLFLEMLKALKLGEEILRRKLYK------- 128
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISH 633
LS G+ + + +P+ LDE V ++ G I ++H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTH 183
Score = 35.4 bits (80), Expect = 0.22, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 1124 VPGKSLLVTGPNGSGKSSVFRVLRGLWP 1151
V G+ +++ GPNGSGK+++ R + GL P
Sbjct: 28 VNGEKVIILGPNGSGKTTLLRAISGLLP 55
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNK- 513
+ N++L V G + G +G+GKS+L R + L G + G S+L K
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 514 --EIFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-- 138
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + DE TSA+ T + E R +G
Sbjct: 139 ------SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 193 TILLITHEMDVV 204
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1234 RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1293
R++ LL +G D + ++ LS G++QR+ +AR PK + DE T+A
Sbjct: 120 RVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1294 LYRLAKDMG 1302
+ L KD+
Sbjct: 179 ILELLKDIN 187
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 42/207 (20%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDL-NKE----- 514
++ +++ V G LI GPNGSGKS+L V+ G G + D+ NKE
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE--NKDITNKEPAELY 80
Query: 515 ------IFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLT----------HGGMVE----L 554
F PQ P + L + LI + + PL MVE +
Sbjct: 81 HYGIVRTFQTPQ-PLKEMTVLENLLIGEINPGE--SPLNSLFYKKWIPKEEEMVEKAFKI 137
Query: 555 LKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDME 614
L+ + L +L DR ELS G+ + + + R PK ++D+ + V +
Sbjct: 138 LEFLKLSHLYDRK--------AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLA 189
Query: 615 E---RFCAKVRAMGTSCITISHRPALV 638
+++A G + + I HR +V
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIV 216
Score = 40.8 bits (94), Expect = 0.005, Method: Composition-based stats.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 30/205 (14%)
Query: 1119 LTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC---GI- 1174
++ + G L+ GPNGSGKS++ V+ G G + ++ I + + GI
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 1175 --FYVPQRPYTCLGTLRDQIIYPLSREEAELRAL---KLHGKGEKLVDTTNILDSYLKTI 1229
F PQ P + L + +I ++ E+ L +L K K E++V+ I
Sbjct: 86 RTFQTPQ-PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAF-------KI 137
Query: 1230 LEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVD 1289
LE ++LS+L +R+ LS G+ + + + R PK ++D+ +
Sbjct: 138 LEFLKLSHLYDRK----------AGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPG 187
Query: 1290 VEEQLYRLA---KDMGITFVTSSQR 1311
+ ++ K GITF+ R
Sbjct: 188 LAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 463 NLTLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
+ L+VEPG + I GPNG GK++ ++L G+ G + + + + Y
Sbjct: 369 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVAY 421
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM-VELLKNVDLEYLLDRYPPEKEINWG 576
PQ + + +Y L S + L ELLK + + L DR
Sbjct: 422 KPQ----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-------- 469
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPA 636
++LS GE QR+ +A +LDE ++ + D+E+R A RA+ + + + A
Sbjct: 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRL-AVSRAI-RHLMEKNEKTA 525
Query: 637 LVAFHDVVL 645
LV HDV++
Sbjct: 526 LVVEHDVLM 534
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 51/232 (21%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVS------GHIAKPGVGSDLNKEIFYVPQ 520
V+ G + I GPNG+GK++ ++L G L P + ++ + G++L
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ-------- 165
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPL---THGGMVELLKNVD-------------LEYLL 564
L++ I P+ Q V+ L G + ELLK VD LE +L
Sbjct: 166 ---NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL 222
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
DR E++ +LS GE QR+ +A K F DE +S + + +R +
Sbjct: 223 DR-----ELH---QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274
Query: 625 ---GTSCITISHRPALVAF-HDVVLSLDGE-GEWRVHDKRDGSSVVTKSGIN 671
G + + + H A++ + DV+ + GE G + + K G T++GIN
Sbjct: 275 ANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKG----TRNGIN 322
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 29/189 (15%)
Query: 463 NLTLKVEPGS-----NLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
+ L+VEPG + I GPNG GK++ ++L G+ G + + + + Y
Sbjct: 355 SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV-------EWDLTVAY 407
Query: 518 VPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM-VELLKNVDLEYLLDRYPPEKEINWG 576
PQ + + +Y L S + L ELLK + + L DR
Sbjct: 408 KPQ----YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNV-------- 455
Query: 577 DELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPA 636
++LS GE QR+ +A +LDE ++ + D+E+R A RA+ + + + A
Sbjct: 456 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYL--DVEQRL-AVSRAI-RHLMEKNEKTA 511
Query: 637 LVAFHDVVL 645
LV HDV++
Sbjct: 512 LVVEHDVLM 520
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 51/232 (21%)
Query: 468 VEPGSNLLITGPNGSGKSSLFRVLGG-LWPLVS------GHIAKPGVGSDLNKEIFYVPQ 520
V+ G + I GPNG+GK++ ++L G L P + ++ + G++L
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ-------- 151
Query: 521 RPYTAVGTLRDQLIYPLTSDQEVEPL---THGGMVELLKNVD-------------LEYLL 564
L++ I P+ Q V+ L G + ELLK VD LE +L
Sbjct: 152 ---NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVL 208
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAM 624
DR E++ +LS GE QR+ +A K F DE +S + + +R +
Sbjct: 209 DR-----ELH---QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 260
Query: 625 ---GTSCITISHRPALVAF-HDVVLSLDGE-GEWRVHDKRDGSSVVTKSGIN 671
G + + + H A++ + DV+ + GE G + + K G T++GIN
Sbjct: 261 ANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKG----TRNGIN 308
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNK- 513
+ N++L V G + G +G+GKS+L R + L G + G S+L K
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 514 --EIFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-- 161
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + D+ TSA+ T + E R +G
Sbjct: 162 ------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 216 TILLITHEXDVV 227
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1234 RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1293
R++ LL +G D + ++ LS G++QR+ +AR PK + D+ T+A
Sbjct: 143 RVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 1294 LYRLAKDMG 1302
+ L KD+
Sbjct: 202 ILELLKDIN 210
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 64/150 (42%), Gaps = 18/150 (12%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF 516
G +++++ K+E G L + G G+GK+SL ++ G G I G I
Sbjct: 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------RIS 72
Query: 517 YVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWG 576
+ Q + GT+++ +I + ++K LE + ++ + I G
Sbjct: 73 FCSQFSWIMPGTIKENIIGVSYDEYRYRS--------VIKACQLEEDISKFAEKDNIVLG 124
Query: 577 D---ELSLGEQQRLGMARLFYHKPKFAILD 603
+ LS G++ R+ +AR Y +LD
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLD 154
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 1117 RQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFY 1176
+ + F+I G+ L V G G+GK+S+ ++ G +PS+ + +G I +
Sbjct: 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--------EPSEGKIKHSGR---ISF 73
Query: 1177 VPQRPYTCLGTLRDQII---YPLSREEAELRALKLHGKGEKLVDTTNIL 1222
Q + GT+++ II Y R + ++A +L K + NI+
Sbjct: 74 CSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV 122
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 1108 ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLT---KPSQ 1162
++ K + R L+ ++ PG+ + GPNGSGKS++ L G + V G++ K
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68
Query: 1163 HIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL 1222
+ E +G GIF Q P G + +Q + L A++ + +G++ +D +
Sbjct: 69 ALSPEDRAGEGIFMAFQYPVEIPG-VSNQFFL-----QTALNAVRSY-RGQETLDRFDFQ 121
Query: 1223 DSYLKTILEGVRLSYLLERE-EVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
D + I LL R VG+ S GE++R + ++ +P+ ILDE
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVGF----------SGGEKKRNDILQMAVLEPELCILDE 171
Query: 1282 CTNATSVD 1289
+ +D
Sbjct: 172 SDSGLDID 179
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSD 510
V+ ++ L+L V PG I GPNGSGKS+L L G + + G + G D
Sbjct: 9 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK--GKD 66
Query: 511 L---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
L + IF Q P G + T+ V ++ G E L D +
Sbjct: 67 LLALSPEDRAGEGIFMAFQYPVEIPGV--SNQFFLQTALNAVR--SYRGQ-ETLDRFDFQ 121
Query: 562 YLLD------RYPPE---KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
L++ + P + + +N G S GE++R + ++ +P+ ILDE S + D
Sbjct: 122 DLMEEKIALLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDID 179
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFH 641
KV A G + + R ++ H
Sbjct: 180 -----ALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 1108 ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGL--WPVVSGSLT---KPSQ 1162
++ K + R L+ ++ PG+ + GPNGSGKS++ L G + V G++ K
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87
Query: 1163 HIDEEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNIL 1222
+ E +G GIF Q P G + +Q + L A++ + +G++ +D +
Sbjct: 88 ALSPEDRAGEGIFMAFQYPVEIPG-VSNQFFL-----QTALNAVRSY-RGQETLDRFDFQ 140
Query: 1223 DSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDEC 1282
D + I LL R N+ + S GE++R + ++ +P+ ILDE
Sbjct: 141 DLMEEKIALLKMPEDLLTRS-----VNVGF----SGGEKKRNDILQMAVLEPELCILDES 191
Query: 1283 TNATSVD 1289
+ +D
Sbjct: 192 DSGLDID 198
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 453 VTPTGNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGL--WPLVSGHIAKPGVGSD 510
V+ ++ L+L V PG I GPNGSGKS+L L G + + G + G D
Sbjct: 28 VSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK--GKD 85
Query: 511 L---------NKEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLE 561
L + IF Q P G + T+ V ++ G E L D +
Sbjct: 86 LLALSPEDRAGEGIFMAFQYPVEIPGV--SNQFFLQTALNAVR--SYRGQ-ETLDRFDFQ 140
Query: 562 YLLD------RYPPE---KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTD 612
L++ + P + + +N G S GE++R + ++ +P+ ILDE S + D
Sbjct: 141 DLMEEKIALLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198
Query: 613 MEERFCAKVRAMGTSCITISHRPALVAFH 641
KV A G + + R ++ H
Sbjct: 199 -----ALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 22/192 (11%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPG------VGSDLNK- 513
+ N++L V G + G +G+GKS+L R + L G + G S+L K
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 514 --EIFYVPQR-PYTAVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPE 570
+I + Q + T+ + PL D + + ELL V L D YP
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-- 161
Query: 571 KEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMGT 626
LS G++QR+ +AR PK + D+ TSA+ T + E R +G
Sbjct: 162 ------SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGL 215
Query: 627 SCITISHRPALV 638
+ + I+H +V
Sbjct: 216 TILLITHEMDVV 227
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 1234 RLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQ 1293
R++ LL +G D + ++ LS G++QR+ +AR PK + D+ T+A
Sbjct: 143 RVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRS 201
Query: 1294 LYRLAKDMG 1302
+ L KD+
Sbjct: 202 ILELLKDIN 210
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF--- 516
++ +++L ++PG L I G +G GK++L R L G SG I+ G K IF
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSG------KTIFSKN 72
Query: 517 -YVPQRPYTAVGTLRDQLIYP-LTSDQEVEPLTHGG----------MVELLKNVDLEYLL 564
+P R +++ +++P LT + + G + +L+ + L
Sbjct: 73 TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELA 132
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDM----EERFCAK 620
RYP ELS G+QQR +AR P+ +LDE SA+ + E A
Sbjct: 133 GRYP--------HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAA 184
Query: 621 VRAMGTSCITISH 633
+RA G S + +SH
Sbjct: 185 LRANGKSAVFVSH 197
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI----AKPGVGSDLN 512
G +++ ++ ++ G ++ G NG+GK++L +L P SG + PG
Sbjct: 33 GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPG------ 86
Query: 513 KEIFYVPQRPYTAVGTLRDQLIYPLTSDQEVEPLTHGGM---VELLKNVDLEYLLDRYP- 568
++ Y + +G + L+ + V + G + + +++D E + +
Sbjct: 87 -KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQL 145
Query: 569 ------PEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
K + LS GE+QR+ +AR +P+ ILDE + +
Sbjct: 146 LKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGL 192
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 33/178 (18%)
Query: 1113 KLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGC 1172
K + ++++++I G ++ G NG+GK+++ +L P SG++ +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK---------- 83
Query: 1173 GIFYVPQRPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEG 1232
P + T+R I + L+ +GE+++D ++ K+I G
Sbjct: 84 ----XPGKVGYSAETVRQHIGF------VSHSLLEKFQEGERVIDV--VISGAFKSI--G 129
Query: 1233 VRLSYLLE-REE-------VGWDANL-NWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
V E R E VG A + LS GE+QR+ +AR +P+ ILDE
Sbjct: 130 VYQDIDDEIRNEAHQLLKLVGXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDE 187
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 32/165 (19%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-----SDLNKE 514
+++ ++ ++E G + GPNG+GK++ R++ L SG + G ++ K
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 515 IFYVPQ-----RPYTAVGTLRDQLIYPLTSDQEVEPLTH-----GGMVELLKNVDLEYLL 564
I Y+P+ R + LR + +S E+E + G+ E +K
Sbjct: 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-------- 141
Query: 565 DRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV 609
DR S G ++L +AR P+ AILDE TS +
Sbjct: 142 DRVST---------YSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 94/227 (41%), Gaps = 47/227 (20%)
Query: 1112 QKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSG 1171
+K + + ++FEI G+ + GPNG+GK++ R++ L SG +T +++ EE
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 86
Query: 1172 CG-IFYVPQ-----RPYTCLGTLRDQIIYPLSR----EEAELRALKLHGKGEKLVDTTNI 1221
I Y+P+ R + LR + S EE RA ++ G GEK+ D
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDR--- 143
Query: 1222 LDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDE 1281
+ +Y K G ++L +AR P+ ILDE
Sbjct: 144 VSTYSK-------------------------------GMVRKLLIARALMVNPRLAILDE 172
Query: 1282 CTNATSV-DVEE--QLYRLAKDMGITFVTSSQRPALIPFHSLELRLI 1325
T+ V + E ++ + A G+T + SS + F + LI
Sbjct: 173 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI 219
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 27/210 (12%)
Query: 458 NVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFY 517
N L + L + G L + G NG GKS+L +L G+ + G I ++ + I +
Sbjct: 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-------EVYQSIGF 70
Query: 518 VPQ---RPYTAVGTLRDQLIYPLTS-DQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEI 573
VPQ P+ A L L+ T + +P +H V + L+YL + ++E
Sbjct: 71 VPQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQA---LDYLNLTHLAKREF 126
Query: 574 NWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKV----RAMGTSCI 629
LS G++Q + +AR + K +LDE TSA+ ++ + + ++ + +
Sbjct: 127 T---SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 630 TISHRP-ALVAFHDVVLSLDGE----GEWR 654
+H+P +VA + L L+ + GE R
Sbjct: 184 FTTHQPNQVVAIANKTLLLNKQNFKFGETR 213
Score = 37.4 bits (85), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 46/223 (20%)
Query: 1099 SISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLT 1158
++S L ++ L +QL F++ G L V G NG GKS++ +L G+ + G +
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI- 62
Query: 1159 KPSQHIDEEAGSGCGIFYVPQ---RPYTCLGTLRDQIIYPLSREEAELRALKLHGKGEKL 1215
E G +VPQ P+ ++ D ++ S K H +
Sbjct: 63 --------EVYQSIG--FVPQFFSSPFAY--SVLDIVLMGRSTHINTFAKPKSHDYQVAM 110
Query: 1216 VDTTNILDSYLKTILEGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPK 1275
L+ + L++L +RE LS G++Q + +AR + K
Sbjct: 111 ------------QALDYLNLTHLAKREFTS----------LSGGQRQLILIARAIASECK 148
Query: 1276 FGILDECTNATSVDVEEQ------LYRLAKDMGITFVTSSQRP 1312
+LDE T+A +D+ Q L LA+ +T V ++ +P
Sbjct: 149 LILLDEPTSA--LDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 457 GNVLVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGG--LWPLVSGHIAKPGVG------ 508
G +++ + L V G + GPNG+GKS+L ++L G + + G I G
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 509 -SDLNKEIFYVPQRPYTAVG-TLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDL----EY 562
K +F Q P G T+ + L L + E ++ K ++L E
Sbjct: 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDES 134
Query: 563 LLDRYPPEKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVR 622
L RY +N G S GE++R + +L +P +A+LDE S + D KV
Sbjct: 135 YLSRY-----LNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDID-----ALKVV 182
Query: 623 AMGTSCITISHRPALVAFH 641
A G + + + ALV H
Sbjct: 183 ARGVNAMRGPNFGALVITH 201
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 85/208 (40%), Gaps = 47/208 (22%)
Query: 1123 IVP-GKSLLVTGPNGSGKSSVFRVLRG--LWPVVSGSLTKPSQHI-----DEEAGSGCGI 1174
+VP G+ + GPNG+GKS++ ++L G + V G + ++I DE A G+
Sbjct: 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK--GL 82
Query: 1175 FYVPQRPYTCLGT-----LRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTI 1229
F Q P G LR + L R E+ + K +K ++ + +SYL
Sbjct: 83 FLAFQYPVEVPGVTIANFLRLALQAKLGR---EVGVAEFWTKVKKALELLDWDESYLSRY 139
Query: 1230 L-EGVRLSYLLEREEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSV 1288
L EG S GE++R + +L +P + +LDE + +
Sbjct: 140 LNEG-----------------------FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 1289 DVEEQLYRLAKDM-----GITFVTSSQR 1311
D + + R M G +T QR
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQR 204
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 33/175 (18%)
Query: 475 LITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLN------KEIFYVPQR----PYT 524
++ GP G+GKS ++ G+ G + G +D+ + I +VPQ P+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG--ADITPLPPERRGIGFVPQDYALFPHL 85
Query: 525 AVGTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQ 584
+V + Y L + + VE + E+ + + + +LLDR P LS GE+
Sbjct: 86 SVYR---NIAYGLRNVERVERDRR--VREMAEKLGIAHLLDRKPAR--------LSGGER 132
Query: 585 QRLGMARLFYHKPKFAILDECTSAVTTD-----MEE-RFCAKVRAMGTSCITISH 633
QR+ +AR +P+ +LDE SAV MEE RF R + ++H
Sbjct: 133 QRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ--REFDVPILHVTH 185
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---------AKPGVGSDL 511
++ + + ++ G I G NG GKS+LF+ G+ SG I ++ G+ L
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI-MKL 82
Query: 512 NKEIFYVPQRPYTAV--GTLRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPP 569
+ I V Q P + ++ + + + + E + LK +E+L D+ P
Sbjct: 83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-PT 141
Query: 570 EKEINWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAV----TTDMEERFCAKVRAMG 625
LS G+++R+ +A + +PK ILDE T+ + +++ + + +G
Sbjct: 142 HC-------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 626 TSCITISHRPALVAFH 641
+ I +H +V +
Sbjct: 195 ITIIIATHDIDIVPLY 210
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 1256 LSLGEQQRLGMARLFFHKPKFGILDECTNATS----VDVEEQLYRLAKDMGITFVTSSQR 1311
LS G+++R+ +A + +PK ILDE T ++ + L + K++GIT + ++
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHD 203
Query: 1312 PALIPFHS 1319
++P +
Sbjct: 204 IDIVPLYC 211
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 36.6 bits (83), Expect = 0.090, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 460 LVENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVG-SDLNKEIFYV 518
++E +T+ +E G+ + GPNG GK++L + + + G I GV + + +IF++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 83
Query: 519 PQ 520
P+
Sbjct: 84 PE 85
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 471 GSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIF-YVPQRPYTAV-GT 528
G + I GPNG GK++ R+L G G + K+I Y PQR + GT
Sbjct: 294 GEIIGILGPNGIGKTTFARILVGEITADEGSVTP-------EKQILSYKPQRIFPNYDGT 346
Query: 529 LRDQLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLG 588
++ Y + ++ + E+ K ++L LL E +N +LS GE Q+L
Sbjct: 347 VQQ---YLENASKDALSTSSWFFEEVTKRLNLHRLL-----ESNVN---DLSGGELQKLY 395
Query: 589 MARLFYHKPKFAILDECTSAVTTDMEERFCA 619
+A + +LD+ +S + D+EER+
Sbjct: 396 IAATLAKEADLYVLDQPSSYL--DVEERYIV 424
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 41/178 (23%)
Query: 1122 EIVPGKSLLVTGPNGSGKSSVFRVLRGLWPVVSGSLTKPSQHIDEEAGSGCGIFYVPQRP 1181
E G+ + + GPNG GK++ R+L G GS+T P + I + Y PQR
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVT-PEKQI---------LSYKPQRI 339
Query: 1182 YTCLGTLRDQIIYPLSREEAELRALKLHGKGEKLVDTTNILDSYLKTILEGVRLSYLLER 1241
+ Q + S+ D + + + + + + L LLE
Sbjct: 340 FPNYDGTVQQYLENASK------------------DALSTSSWFFEEVTKRLNLHRLLE- 380
Query: 1242 EEVGWDANLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEQLYRLAK 1299
+N+N LS GE Q+L +A + +LD+ + + +DVEE+ Y +AK
Sbjct: 381 ------SNVND---LSGGELQKLYIAATLAKEADLYVLDQPS--SYLDVEER-YIVAK 426
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 620 KVRAMGTSCITISHRPALVAFHDVVLSLDGE---------GEWRVHDKRDGSSVV-TKSG 669
K+ GT+ IT++H AL HDV ++L+ E W DG+ + +G
Sbjct: 46 KITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTG 105
Query: 670 INMIKSSETDRQSD 683
SS T+R S+
Sbjct: 106 FGACSSSRTNRLSE 119
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 33.9 bits (76), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 28/176 (15%)
Query: 474 LLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EIFYVPQRPYTAV-GTLRD 531
L++ G NG+GK++L ++L G KP G D+ K + PQ+ GT+R
Sbjct: 381 LVMMGENGTGKTTLIKLLAGAL--------KPDEGQDIPKLNVSMKPQKIAPKFPGTVR- 431
Query: 532 QLIYPLTSDQEVEPLTHGGMVELLKNVDLEYLLDRYPPEKEINWGDELSLGEQQRLGMAR 591
QL + Q + P +V+ L+ ++ ++D +E+ LS GE QR+ +
Sbjct: 432 QLFFKKIRGQFLNPQFQTDVVKPLR---IDDIID-----QEVQ---HLSGGELQRVAIVL 480
Query: 592 LFYHKPKFAILDECTSAVTTDMEER-FCAKVRAMGTSCITISHRPALVAFHDVVLS 646
++DE ++ + D E+R C+KV I + + A + HD +++
Sbjct: 481 ALGIPADIYLIDEPSAYL--DSEQRIICSKVI---RRFILHNKKTAFIVEHDFIMA 531
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+ ++ + S + + GPNG+GKS+L VL G SG V + N I Y+ Q
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE-----VYTHENCRIAYIKQ 743
Query: 521 RPYTAVGTLRDQ 532
+ + + D+
Sbjct: 744 HAFAHIESHLDK 755
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered Orthorhombic
Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 1091 WNSTDYQDSISFSKLDI---ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147
WN +Y+D SF K +T Q+L A++ IV GKS + P G GK++ F ++
Sbjct: 61 WN--EYEDFRSFFKKKFGKDLTGYQRLWAKR----IVQGKSFTMVAPTGVGKTT-FGMMT 113
Query: 1148 GLWPVVSG 1155
LW G
Sbjct: 114 ALWLARKG 121
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+ ++ + S + + GPNG+GKS+L VL G SG V + N I Y+ Q
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE-----VYTHENCRIAYIKQ 737
Query: 521 RPYTAVGTLRDQ 532
+ + + D+
Sbjct: 738 HAFAHIESHLDK 749
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 461 VENLTLKVEPGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNKEIFYVPQ 520
+ ++ + S + + GPNG+GKS+L VL G SG V + N I Y+ Q
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE-----VYTHENCRIAYIKQ 743
Query: 521 RPYTAVGTLRDQ 532
+ + + D+
Sbjct: 744 HAFAHIESHLDK 755
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima -
P2 Form
Length = 415
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 1091 WNSTDYQDSISFSKLDI---ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147
WN +Y+D SF K +T Q+L A++ IV GKS + P G GK++ F ++
Sbjct: 5 WN--EYEDFRSFFKKKFGKDLTGYQRLWAKR----IVQGKSFTMVAPTGVGKTT-FGMMT 57
Query: 1148 GLWPVVSG 1155
LW G
Sbjct: 58 ALWLARKG 65
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 1091 WNSTDYQDSISFSKLDI---ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147
WN +Y+D SF K +T Q+L A++ IV GKS + P G GK++ F ++
Sbjct: 4 WN--EYEDFRSFFKKKFGKDLTGYQRLWAKR----IVQGKSFTMVAPTGVGKTT-FGMMT 56
Query: 1148 GLWPVVSG 1155
LW G
Sbjct: 57 ALWLARKG 64
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 1091 WNSTDYQDSISFSKLDI---ITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSVFRVLR 1147
WN +Y+D SF K +T Q+L A++ IV GKS + P G GK++ F ++
Sbjct: 3 WN--EYEDFRSFFKKKFGKDLTGYQRLWAKR----IVQGKSFTMVAPTGVGKTT-FGMMT 55
Query: 1148 GLWPVVSG 1155
LW G
Sbjct: 56 ALWLARKG 63
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 579 LSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEE---RFCAKVRAMGTSCITISH 633
LS G+QQR+ +AR +P + DE TSA+ ++ R ++ G + + ++H
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 620 KVRAMGTSCITISHRPALVAFHDVVLSLDGE---------GEWRVHDKRDGSSVV-TKSG 669
K+ GT+ IT++H AL HDV ++L+ E W DG+ + +G
Sbjct: 46 KITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTG 105
Query: 670 INMIKSSETDRQSD 683
S T+R S+
Sbjct: 106 FGACSSRRTNRLSE 119
>pdb|1VT4|I Chain I, Structure Of The Drosophila Apoptosome
pdb|1VT4|J Chain J, Structure Of The Drosophila Apoptosome
pdb|1VT4|K Chain K, Structure Of The Drosophila Apoptosome
pdb|1VT4|L Chain L, Structure Of The Drosophila Apoptosome
pdb|1VT4|M Chain M, Structure Of The Drosophila Apoptosome
pdb|1VT4|N Chain N, Structure Of The Drosophila Apoptosome
pdb|1VT4|O Chain O, Structure Of The Drosophila Apoptosome
pdb|1VT4|P Chain P, Structure Of The Drosophila Apoptosome
pdb|3IZ8|A Chain A, Structure Of The Drosophila Apoptosome
pdb|3IZ8|B Chain B, Structure Of The Drosophila Apoptosome
pdb|3IZ8|C Chain C, Structure Of The Drosophila Apoptosome
pdb|3IZ8|D Chain D, Structure Of The Drosophila Apoptosome
pdb|3IZ8|E Chain E, Structure Of The Drosophila Apoptosome
pdb|3IZ8|F Chain F, Structure Of The Drosophila Apoptosome
pdb|3IZ8|G Chain G, Structure Of The Drosophila Apoptosome
pdb|3IZ8|H Chain H, Structure Of The Drosophila Apoptosome
Length = 1221
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1096 YQDSISFSKLDIITPSQKLLARQLTFEIVPGKSLLVTGPNGSGKSSV 1142
Y D+ F+K ++ L RQ E+ P K++L+ G GSGK+ V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
>pdb|3Q6X|A Chain A, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
pdb|3Q6X|B Chain B, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
Length = 243
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 90 VLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 87 ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 128
>pdb|3MXO|A Chain A, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3MXO|B Chain B, Crystal Structure Oh Human Phosphoglycerate Mutase Family
Member 5 (Pgam5)
pdb|3O0T|A Chain A, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
pdb|3O0T|B Chain B, Crystal Structure Of Human Phosphoglycerate Mutase Family
Member 5 (Pgam5) In Complex With Phosphate
Length = 202
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 1174 IFYVPQRPYTCLGTL-RDQIIYPLSREEAELRALKL-----------HGKGEKLVDTTNI 1221
IF + Y G+L +D+ + PL RE+AEL L+L H + ++TT+I
Sbjct: 13 IFLIRHSQYHVDGSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIVHSSMTRAIETTDI 72
Query: 1222 LDSYLKTILE 1231
+ +L + +
Sbjct: 73 ISRHLPGVCK 82
>pdb|3SPU|A Chain A, Apo Ndm-1 Crystal Structure
pdb|3SPU|B Chain B, Apo Ndm-1 Crystal Structure
pdb|3SPU|C Chain C, Apo Ndm-1 Crystal Structure
pdb|3SPU|D Chain D, Apo Ndm-1 Crystal Structure
pdb|3SPU|E Chain E, Apo Ndm-1 Crystal Structure
Length = 265
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 90 VLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 88 ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 129
>pdb|4EXS|B Chain B, Crystal Structure Of Ndm-1 Bound To L-Captopril
pdb|4EXS|A Chain A, Crystal Structure Of Ndm-1 Bound To L-Captopril
pdb|4EXY|A Chain A, Crystal Structure Of Ndm-1 Bound To Ethylene Glycol
pdb|4EXY|B Chain B, Crystal Structure Of Ndm-1 Bound To Ethylene Glycol
pdb|4EYL|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Meropenem
pdb|4EYL|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Meropenem
Length = 272
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 90 VLAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 114 ALAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 155
>pdb|3RKK|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3RKK|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3SBL|A Chain A, Crystal Structure Of New Delhi Metal-Beta-Lactamase-1 From
Klebsiella Pneumoniae
pdb|3SRX|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SRX|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SFP|A Chain A, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|B Chain B, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|C Chain C, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|D Chain D, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
Length = 237
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 82 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 122
>pdb|3S0Z|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
pdb|3S0Z|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
Length = 224
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 69 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 109
>pdb|3ZR9|A Chain A, Structure Of New Delhi Metallo-Beta-Lactamase 1 (Ndm-1)
Length = 231
Score = 30.8 bits (68), Expect = 5.6, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 76 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 116
>pdb|3RKJ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
pdb|3RKJ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
Length = 235
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 80 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 120
>pdb|4H0D|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4H0D|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4HL1|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL1|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL2|A Chain A, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HL2|B Chain B, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HKY|A Chain A, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
pdb|4HKY|B Chain B, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
Length = 243
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 88 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 128
>pdb|4GYQ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|C Chain C, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|D Chain D, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
Length = 243
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 88 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 128
>pdb|3PG4|A Chain A, The Crystal Structure Of New Delhi Metallo-Beta Lactamase
(Ndm-1)
Length = 230
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 68 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 108
>pdb|4EY2|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Methicillin
pdb|4EY2|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Methicillin
pdb|4EYF|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed
Benzylpenicillin
pdb|4EYF|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed
Benzylpenicillin
pdb|4EYB|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Oxacillin
pdb|4EYB|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Oxacillin
Length = 270
Score = 30.8 bits (68), Expect = 5.9, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 91 LAAILLSEMGKMGARDLLALVGIVVLRTALSNRLAKVQGFL 131
LA + + KMG D L GI ALSN+LA +G +
Sbjct: 115 LAVVTHAHQDKMGGMDALHAAGIATYANALSNQLAPQEGMV 155
>pdb|3NZ4|A Chain A, Crystal Structure Of A Taxus Phenylalanine Aminomutase
pdb|3NZ4|B Chain B, Crystal Structure Of A Taxus Phenylalanine Aminomutase
Length = 696
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 620 KVRAMGTSCITISHRPALVAFHDVVLSLDGE---------GEWRVHDKRDGSSVV-TKSG 669
K+ GT+ IT++H AL HDV ++L+ E W DG+ + +G
Sbjct: 26 KITVDGTTPITVAHVAALARRHDVKVALEAEQCRARVETCSSWVQRKAEDGADIYGVTTG 85
Query: 670 INMIKSSETDRQSD 683
S T++ S+
Sbjct: 86 FGACSSRRTNQLSE 99
>pdb|3A0B|D Chain D, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0B|DD Chain d, Crystal Structure Of Br-Substituted Photosystem Ii Complex
pdb|3A0H|D Chain D, Crystal Structure Of I-Substituted Photosystem Ii Complex
pdb|3A0H|DD Chain d, Crystal Structure Of I-Substituted Photosystem Ii Complex
Length = 340
Score = 30.0 bits (66), Expect = 8.3, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EIF-YVPQRPYTAVG-- 527
S LL+ GP G + + LGGLW ++ H A +G L + EI V RPY A+
Sbjct: 76 SLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFS 135
Query: 528 -----TLRDQLIYPL 537
+ LIYPL
Sbjct: 136 APIAVFVSVFLIYPL 150
>pdb|1IZL|D Chain D, Crystal Structure Of Photosystem Ii
pdb|1IZL|N Chain N, Crystal Structure Of Photosystem Ii
pdb|1S5L|D Chain D, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1S5L|DD Chain d, Architecture Of The Photosynthetic Oxygen Evolving Center
pdb|1W5C|D Chain D, Photosystem Ii From Thermosynechococcus Elongatus
pdb|1W5C|J Chain J, Photosystem Ii From Thermosynechococcus Elongatus
pdb|2AXT|D Chain D, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|2AXT|DD Chain d, Crystal Structure Of Photosystem Ii From
Thermosynechococcus Elongatus
pdb|3BZ1|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 1
Of 2). This File Contains First Monomer Of Psii Dimer
pdb|3BZ2|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii (Part 2
Of 2). This File Contains Second Monomer Of Psii Dimer
pdb|3KZI|D Chain D, Crystal Structure Of Monomeric Form Of Cyanobacterial
Photosystem Ii
pdb|3PRQ|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 1 Of 2). This File Contains
First Monomer Of Psii Dimer
pdb|3PRR|D Chain D, Crystal Structure Of Cyanobacterial Photosystem Ii In
Complex With Terbutryn (Part 2 Of 2). This File Contains
Second Monomer Of Psii Dimer
pdb|4FBY|D Chain D, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4FBY|Q Chain Q, Fs X-Ray Diffraction Of Photosystem Ii
pdb|4IXQ|D Chain D, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXQ|DD Chain d, Rt Fs X-ray Diffraction Of Photosystem Ii, Dark State
pdb|4IXR|D Chain D, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
pdb|4IXR|DD Chain d, Rt Fs X-ray Diffraction Of Photosystem Ii, First
Illuminated State
Length = 352
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EIF-YVPQRPYTAVG-- 527
S LL+ GP G + + LGGLW ++ H A +G L + EI V RPY A+
Sbjct: 88 SLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFS 147
Query: 528 -----TLRDQLIYPL 537
+ LIYPL
Sbjct: 148 APIAVFVSVFLIYPL 162
>pdb|3ARC|D Chain D, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
pdb|3ARC|DD Chain d, Crystal Structure Of Oxygen-Evolving Photosystem Ii At 1.9
Angstrom Resolution
Length = 342
Score = 30.0 bits (66), Expect = 8.5, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 472 SNLLITGPNGSGKSSLFRVLGGLWPLVSGHIAKPGVGSDLNK-EIF-YVPQRPYTAVG-- 527
S LL+ GP G + + LGGLW ++ H A +G L + EI V RPY A+
Sbjct: 78 SLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFS 137
Query: 528 -----TLRDQLIYPL 537
+ LIYPL
Sbjct: 138 APIAVFVSVFLIYPL 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,942,071
Number of Sequences: 62578
Number of extensions: 1505011
Number of successful extensions: 4150
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 3759
Number of HSP's gapped (non-prelim): 317
length of query: 1338
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1227
effective length of database: 8,027,179
effective search space: 9849348633
effective search space used: 9849348633
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)