Query 000712
Match_columns 1336
No_of_seqs 1098 out of 5475
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 22:27:42 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4231 Intracellular membrane 100.0 2E-95 4E-100 816.7 32.9 761 67-937 1-763 (763)
2 cd07211 Pat_PNPLA8 Patatin-lik 100.0 5.4E-52 1.2E-56 481.7 30.6 303 533-889 1-308 (308)
3 cd07215 Pat17_PNPLA8_PNPLA9_li 100.0 1.2E-48 2.7E-53 456.6 28.7 299 541-900 1-329 (329)
4 cd07216 Pat17_PNPLA8_PNPLA9_li 100.0 2.1E-48 4.5E-53 451.4 26.6 292 540-886 1-308 (309)
5 cd07212 Pat_PNPLA9 Patatin-lik 100.0 3.1E-47 6.6E-52 439.2 26.1 285 542-889 1-311 (312)
6 cd07214 Pat17_isozyme_like Pat 100.0 9.6E-47 2.1E-51 441.9 29.1 297 538-892 2-343 (349)
7 cd07213 Pat17_PNPLA8_PNPLA9_li 100.0 6.4E-40 1.4E-44 376.6 27.5 265 539-884 1-283 (288)
8 cd07199 Pat17_PNPLA8_PNPLA9_li 100.0 1.2E-39 2.6E-44 369.3 25.1 244 542-886 1-257 (258)
9 cd07217 Pat17_PNPLA8_PNPLA9_li 100.0 6.5E-38 1.4E-42 364.8 24.8 236 540-829 1-258 (344)
10 COG3621 Patatin [General funct 100.0 6.2E-31 1.3E-35 286.6 14.1 196 539-789 8-215 (394)
11 cd07225 Pat_PNPLA6_PNPLA7 Pata 99.9 3.5E-24 7.5E-29 246.7 27.6 185 541-810 16-202 (306)
12 cd07207 Pat_ExoU_VipD_like Exo 99.9 4.8E-25 1E-29 239.4 17.3 179 543-784 2-186 (194)
13 cd07205 Pat_PNPLA6_PNPLA7_NTE1 99.9 8.2E-25 1.8E-29 233.7 17.8 163 542-787 2-164 (175)
14 cd07210 Pat_hypo_W_succinogene 99.9 1.2E-23 2.7E-28 232.0 18.8 178 542-809 2-179 (221)
15 cd07228 Pat_NTE_like_bacteria 99.9 4.6E-23 9.9E-28 220.2 17.0 162 542-787 2-164 (175)
16 cd07209 Pat_hypo_Ecoli_Z1214_l 99.9 2.1E-22 4.7E-27 221.9 17.8 169 543-811 1-172 (215)
17 KOG0444 Cytoskeletal regulator 99.9 5.8E-25 1.3E-29 254.6 -3.1 278 120-413 50-372 (1255)
18 KOG4194 Membrane glycoprotein 99.9 2.4E-23 5.1E-28 241.3 9.6 311 126-465 79-403 (873)
19 KOG0444 Cytoskeletal regulator 99.9 4.6E-25 9.9E-30 255.4 -8.2 285 119-421 26-357 (1255)
20 cd07227 Pat_Fungal_NTE1 Fungal 99.9 8.4E-22 1.8E-26 222.0 17.8 184 541-809 11-194 (269)
21 PLN00113 leucine-rich repeat r 99.9 3.7E-22 8E-27 267.1 17.7 268 119-413 87-366 (968)
22 PLN00113 leucine-rich repeat r 99.9 5.1E-22 1.1E-26 265.7 16.6 287 119-414 230-558 (968)
23 KOG4194 Membrane glycoprotein 99.9 6.6E-23 1.4E-27 237.6 6.0 287 116-419 93-432 (873)
24 cd07208 Pat_hypo_Ecoli_yjju_li 99.9 1E-20 2.2E-25 215.8 22.9 169 543-787 1-170 (266)
25 PRK10279 hypothetical protein; 99.9 5.4E-20 1.2E-24 210.8 25.8 177 541-806 6-182 (300)
26 PRK15387 E3 ubiquitin-protein 99.9 7.7E-21 1.7E-25 239.7 18.8 340 125-530 222-569 (788)
27 cd07230 Pat_TGL4-5_like Triacy 99.8 6.4E-20 1.4E-24 219.3 19.9 181 539-784 72-271 (421)
28 KOG0472 Leucine-rich repeat pr 99.8 9E-23 1.9E-27 228.3 -7.0 286 120-419 132-474 (565)
29 cd07198 Patatin Patatin-like p 99.8 6.3E-20 1.4E-24 195.5 14.3 158 543-784 1-163 (172)
30 cd07232 Pat_PLPL Patain-like p 99.8 4E-19 8.8E-24 211.6 20.0 184 539-793 66-265 (407)
31 KOG0472 Leucine-rich repeat pr 99.8 1.2E-22 2.7E-27 227.3 -9.8 268 120-416 40-310 (565)
32 PRK15370 E3 ubiquitin-protein 99.8 2.9E-19 6.2E-24 226.9 17.9 332 125-530 199-535 (754)
33 PF01734 Patatin: Patatin-like 99.8 1.8E-20 3.9E-25 201.3 4.4 200 543-786 1-204 (204)
34 cd07221 Pat_PNPLA3 Patatin-lik 99.8 1.1E-18 2.4E-23 195.6 15.6 166 543-784 3-170 (252)
35 COG1752 RssA Predicted esteras 99.8 2.2E-18 4.8E-23 200.3 18.5 187 540-805 11-199 (306)
36 cd07222 Pat_PNPLA4 Patatin-lik 99.8 1E-18 2.2E-23 196.2 15.1 167 543-784 2-170 (246)
37 cd07218 Pat_iPLA2 Calcium-inde 99.8 2.7E-18 5.8E-23 192.0 15.8 161 543-782 3-166 (245)
38 cd07219 Pat_PNPLA1 Patatin-lik 99.8 4E-18 8.7E-23 196.5 16.5 168 540-784 12-182 (382)
39 cd07204 Pat_PNPLA_like Patatin 99.8 5E-18 1.1E-22 190.2 15.4 165 543-784 2-169 (243)
40 PRK15387 E3 ubiquitin-protein 99.8 7.4E-18 1.6E-22 212.9 16.6 216 124-383 241-457 (788)
41 cd07220 Pat_PNPLA2 Patatin-lik 99.7 2.3E-17 4.9E-22 184.4 15.2 165 543-784 7-174 (249)
42 cd07224 Pat_like Patatin-like 99.7 6.7E-17 1.5E-21 180.2 15.3 158 543-783 2-164 (233)
43 cd07206 Pat_TGL3-4-5_SDP1 Tria 99.7 2.8E-16 6.2E-21 177.6 16.0 135 539-785 68-216 (298)
44 KOG0618 Serine/threonine phosp 99.7 4.6E-19 9.9E-24 216.4 -7.7 86 123-211 43-128 (1081)
45 PRK15370 E3 ubiquitin-protein 99.7 5E-16 1.1E-20 197.6 15.5 246 124-415 177-427 (754)
46 cd07229 Pat_TGL3_like Triacylg 99.6 5.4E-15 1.2E-19 173.2 19.7 201 539-805 82-311 (391)
47 KOG2968 Predicted esterase of 99.6 3.1E-15 6.7E-20 180.6 17.2 183 540-807 839-1023(1158)
48 cd07231 Pat_SDP1-like Sugar-De 99.6 4.4E-15 9.6E-20 167.7 17.2 141 539-784 67-227 (323)
49 KOG0617 Ras suppressor protein 99.6 4.6E-18 9.9E-23 171.7 -6.1 162 145-308 29-194 (264)
50 KOG0618 Serine/threonine phosp 99.6 1E-17 2.3E-22 204.6 -4.6 224 149-382 219-463 (1081)
51 PLN03210 Resistant to P. syrin 99.6 5.8E-15 1.2E-19 199.6 20.3 184 114-304 547-741 (1153)
52 COG4667 Predicted esterase of 99.6 5.2E-14 1.1E-18 152.1 20.6 170 539-787 10-182 (292)
53 cd01819 Patatin_and_cPLA2 Pata 99.6 3.4E-15 7.4E-20 156.2 11.1 143 543-804 1-155 (155)
54 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.8E-22 167.5 -5.9 167 118-287 26-195 (264)
55 KOG0513 Ca2+-independent phosp 99.6 3.7E-15 7.9E-20 179.4 11.8 345 533-946 28-447 (503)
56 cd07223 Pat_PNPLA5-mammals Pat 99.6 1.4E-14 3E-19 166.2 14.5 167 540-783 9-178 (405)
57 KOG4237 Extracellular matrix p 99.6 1.4E-16 3.1E-21 179.3 -1.7 203 91-302 66-336 (498)
58 PLN03210 Resistant to P. syrin 99.6 4.4E-14 9.5E-19 191.1 19.0 261 120-413 629-903 (1153)
59 TIGR03607 patatin-related prot 99.5 5.4E-13 1.2E-17 166.9 19.6 218 542-792 5-297 (739)
60 cd00116 LRR_RI Leucine-rich re 99.4 7E-14 1.5E-18 163.1 0.9 209 120-329 18-263 (319)
61 KOG4237 Extracellular matrix p 99.3 6.1E-14 1.3E-18 158.3 -2.3 130 125-255 67-200 (498)
62 KOG2214 Predicted esterase of 99.3 1.1E-11 2.4E-16 144.5 15.3 207 520-806 162-387 (543)
63 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 162.1 -1.0 176 124-304 74-250 (722)
64 cd00116 LRR_RI Leucine-rich re 99.3 3E-13 6.6E-18 157.7 2.3 210 118-330 44-292 (319)
65 KOG0513 Ca2+-independent phosp 99.3 1.7E-12 3.7E-17 156.6 6.1 211 535-806 289-503 (503)
66 KOG0532 Leucine-rich repeat (L 99.2 2.2E-13 4.8E-18 159.7 -5.3 109 172-281 96-204 (722)
67 KOG1259 Nischarin, modulator o 99.2 2.3E-12 4.9E-17 140.6 0.5 207 120-332 177-415 (490)
68 KOG3207 Beta-tubulin folding c 99.2 3.2E-12 7E-17 146.5 -0.2 206 121-330 117-340 (505)
69 KOG1259 Nischarin, modulator o 99.2 4.3E-12 9.3E-17 138.5 0.3 135 171-307 281-418 (490)
70 COG4886 Leucine-rich repeat (L 99.2 2.6E-11 5.7E-16 146.3 7.1 196 129-333 97-294 (394)
71 COG4886 Leucine-rich repeat (L 99.2 2.7E-11 5.8E-16 146.3 6.1 182 119-303 110-292 (394)
72 KOG3207 Beta-tubulin folding c 99.1 6.6E-12 1.4E-16 144.0 0.2 184 147-330 119-315 (505)
73 PF14580 LRR_9: Leucine-rich r 99.1 3.7E-11 7.9E-16 127.5 3.5 106 172-279 17-126 (175)
74 PF14580 LRR_9: Leucine-rich r 99.1 6.4E-11 1.4E-15 125.6 3.4 140 181-324 4-148 (175)
75 KOG1909 Ran GTPase-activating 98.9 8.9E-11 1.9E-15 131.9 -1.4 236 89-329 27-311 (382)
76 KOG1909 Ran GTPase-activating 98.9 1.6E-10 3.6E-15 129.8 -1.7 237 118-382 23-309 (382)
77 KOG0531 Protein phosphatase 1, 98.9 3.1E-10 6.7E-15 138.0 -0.6 129 172-302 93-222 (414)
78 KOG0531 Protein phosphatase 1, 98.9 2.2E-10 4.8E-15 139.3 -2.5 198 122-331 69-270 (414)
79 KOG1859 Leucine-rich repeat pr 98.6 4.7E-10 1E-14 134.8 -10.3 127 198-329 165-292 (1096)
80 KOG4658 Apoptotic ATPase [Sign 98.6 5.4E-08 1.2E-12 126.7 7.0 252 122-383 520-782 (889)
81 KOG1859 Leucine-rich repeat pr 98.6 9.5E-10 2.1E-14 132.2 -8.9 149 172-330 107-268 (1096)
82 PLN03150 hypothetical protein; 98.5 2.2E-07 4.7E-12 118.5 8.2 105 150-255 419-527 (623)
83 PLN03150 hypothetical protein; 98.5 3E-07 6.6E-12 117.2 9.3 104 198-301 419-528 (623)
84 KOG4658 Apoptotic ATPase [Sign 98.3 2.8E-07 6.1E-12 120.2 4.0 179 122-302 542-731 (889)
85 KOG2982 Uncharacterized conser 98.3 2.1E-07 4.4E-12 102.8 2.0 209 119-330 65-291 (418)
86 KOG4579 Leucine-rich repeat (L 98.3 4.5E-08 9.8E-13 97.1 -4.2 109 174-282 27-139 (177)
87 KOG2982 Uncharacterized conser 98.2 4.3E-07 9.3E-12 100.3 1.0 19 365-383 243-261 (418)
88 PF13855 LRR_8: Leucine rich r 98.2 1.3E-06 2.9E-11 76.4 3.7 57 221-277 2-60 (61)
89 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.7E-11 95.7 1.6 184 91-279 29-255 (388)
90 KOG1644 U2-associated snRNP A' 98.0 7.3E-06 1.6E-10 86.8 6.0 119 177-297 22-149 (233)
91 KOG4579 Leucine-rich repeat (L 98.0 1.8E-07 3.9E-12 92.9 -5.6 111 126-238 28-141 (177)
92 PF13855 LRR_8: Leucine rich r 98.0 3.6E-06 7.8E-11 73.7 2.9 58 150-208 2-60 (61)
93 KOG2120 SCF ubiquitin ligase, 98.0 1.6E-07 3.4E-12 103.7 -7.1 171 127-298 187-373 (419)
94 PRK15386 type III secretion pr 97.8 3.4E-05 7.4E-10 91.6 8.3 155 120-298 47-210 (426)
95 KOG3773 Adiponutrin and relate 97.8 9.2E-06 2E-10 91.5 3.3 166 541-784 7-175 (354)
96 PRK15386 type III secretion pr 97.8 4.5E-05 9.8E-10 90.6 8.6 135 145-299 48-188 (426)
97 KOG2120 SCF ubiquitin ligase, 97.8 9.6E-07 2.1E-11 97.7 -5.3 159 119-277 204-374 (419)
98 COG5238 RNA1 Ran GTPase-activa 97.8 1.2E-05 2.5E-10 88.3 2.3 211 119-330 24-286 (388)
99 KOG1644 U2-associated snRNP A' 97.7 5.3E-05 1.2E-09 80.4 6.1 126 199-327 21-151 (233)
100 PF12799 LRR_4: Leucine Rich r 97.6 6.5E-05 1.4E-09 61.3 3.5 10 178-187 5-14 (44)
101 KOG2739 Leucine-rich acidic nu 97.5 3.2E-05 6.9E-10 85.4 1.6 103 169-273 38-150 (260)
102 PF12799 LRR_4: Leucine Rich r 97.5 8.4E-05 1.8E-09 60.7 3.6 37 221-257 2-38 (44)
103 KOG3665 ZYG-1-like serine/thre 97.5 3.3E-05 7.1E-10 98.8 1.7 130 149-279 122-263 (699)
104 KOG3665 ZYG-1-like serine/thre 97.5 4.9E-05 1.1E-09 97.3 2.5 129 173-302 121-264 (699)
105 KOG2739 Leucine-rich acidic nu 97.1 0.00016 3.4E-09 80.0 1.1 83 196-279 42-129 (260)
106 KOG2123 Uncharacterized conser 97.1 2.6E-05 5.5E-10 86.0 -5.2 85 172-258 17-103 (388)
107 cd00147 cPLA2_like Cytosolic p 96.6 0.006 1.3E-07 73.9 8.9 62 537-601 40-103 (438)
108 KOG2123 Uncharacterized conser 96.3 0.00019 4.1E-09 79.3 -5.7 82 219-302 18-102 (388)
109 PF13306 LRR_5: Leucine rich r 96.0 0.016 3.5E-07 58.1 7.2 104 119-228 6-111 (129)
110 KOG4308 LRR-containing protein 96.0 7.3E-05 1.6E-09 91.9 -12.0 176 127-302 89-304 (478)
111 PF12770 CHAT: CHAT domain 95.9 0.057 1.2E-06 62.3 12.0 83 1176-1322 173-265 (287)
112 PF13306 LRR_5: Leucine rich r 95.6 0.029 6.3E-07 56.3 6.9 83 144-230 7-91 (129)
113 cd00020 ARM Armadillo/beta-cat 95.6 0.029 6.4E-07 55.0 6.8 114 408-521 6-119 (120)
114 KOG4341 F-box protein containi 95.0 0.0015 3.4E-08 76.1 -4.8 206 119-326 158-382 (483)
115 KOG4308 LRR-containing protein 95.0 0.0003 6.4E-09 86.6 -11.5 178 151-330 89-304 (478)
116 KOG4224 Armadillo repeat prote 94.2 0.056 1.2E-06 62.0 4.9 141 388-530 105-245 (550)
117 KOG0166 Karyopherin (importin) 93.4 0.33 7.1E-06 59.6 9.8 147 378-525 120-269 (514)
118 KOG0473 Leucine-rich repeat pr 93.0 0.0029 6.3E-08 68.6 -7.3 80 220-299 42-122 (326)
119 KOG0473 Leucine-rich repeat pr 92.9 0.0033 7.2E-08 68.2 -7.1 78 176-253 44-121 (326)
120 KOG1947 Leucine rich repeat pr 92.5 0.026 5.6E-07 69.7 -1.3 132 120-251 183-329 (482)
121 KOG1947 Leucine rich repeat pr 91.7 0.02 4.3E-07 70.7 -3.5 130 146-275 185-330 (482)
122 KOG4224 Armadillo repeat prote 91.5 0.26 5.6E-06 56.8 5.3 157 371-529 254-412 (550)
123 PF00560 LRR_1: Leucine Rich R 91.4 0.084 1.8E-06 36.4 0.8 19 176-194 2-20 (22)
124 PF00560 LRR_1: Leucine Rich R 91.2 0.093 2E-06 36.2 0.9 17 222-238 2-18 (22)
125 PF04826 Arm_2: Armadillo-like 91.2 0.9 2E-05 51.7 9.3 148 376-528 21-169 (254)
126 PLN03200 cellulose synthase-in 90.5 0.63 1.4E-05 65.8 8.5 142 388-530 383-526 (2102)
127 cd07202 cPLA2_Grp-IVC Group IV 89.8 0.92 2E-05 54.5 8.1 63 537-602 37-103 (430)
128 KOG1048 Neural adherens juncti 89.7 0.69 1.5E-05 58.7 7.2 114 415-528 239-355 (717)
129 PLN03200 cellulose synthase-in 89.5 0.62 1.3E-05 65.8 7.3 151 371-521 407-558 (2102)
130 PF05804 KAP: Kinesin-associat 88.6 0.86 1.9E-05 58.8 7.2 135 391-529 272-406 (708)
131 PF13504 LRR_7: Leucine rich r 86.8 0.39 8.5E-06 31.0 1.4 15 175-189 2-16 (17)
132 PF05804 KAP: Kinesin-associat 86.6 2 4.4E-05 55.5 8.8 160 379-556 301-461 (708)
133 KOG4341 F-box protein containi 85.7 0.3 6.5E-06 57.8 0.7 174 121-294 264-458 (483)
134 PF13504 LRR_7: Leucine rich r 85.6 0.49 1.1E-05 30.6 1.4 12 222-233 3-14 (17)
135 KOG4231 Intracellular membrane 85.3 0.44 9.6E-06 57.0 1.9 79 447-527 283-362 (763)
136 COG5064 SRP1 Karyopherin (impo 80.4 9.8 0.00021 44.1 9.8 145 381-527 128-277 (526)
137 smart00370 LRR Leucine-rich re 79.5 1.4 3E-05 31.5 2.0 19 174-192 2-20 (26)
138 smart00369 LRR_TYP Leucine-ric 79.5 1.4 3E-05 31.5 2.0 19 174-192 2-20 (26)
139 cd07201 cPLA2_Grp-IVB-IVD-IVE- 79.0 3.2 6.9E-05 51.5 6.0 73 539-614 53-127 (541)
140 smart00369 LRR_TYP Leucine-ric 76.9 1.8 4E-05 30.8 1.9 17 221-237 3-19 (26)
141 smart00370 LRR Leucine-rich re 76.9 1.8 4E-05 30.8 1.9 17 221-237 3-19 (26)
142 cd00020 ARM Armadillo/beta-cat 76.7 4 8.8E-05 39.6 5.1 77 448-525 4-81 (120)
143 KOG0166 Karyopherin (importin) 75.8 4.9 0.00011 49.7 6.3 110 414-523 242-352 (514)
144 PF13513 HEAT_EZ: HEAT-like re 75.3 4.5 9.8E-05 34.3 4.3 54 465-519 1-54 (55)
145 cd07200 cPLA2_Grp-IVA Group IV 72.3 5.1 0.00011 49.7 5.3 62 538-602 43-109 (505)
146 KOG3864 Uncharacterized conser 71.9 0.42 9.1E-06 51.7 -3.5 79 127-205 103-184 (221)
147 PF00044 Gp_dh_N: Glyceraldehy 70.7 13 0.00029 39.0 7.2 55 1181-1238 78-133 (151)
148 cd05126 Mth938 Mth938 domain. 66.8 6.7 0.00014 39.3 3.9 49 1178-1226 44-95 (117)
149 PF10508 Proteasom_PSMB: Prote 66.0 35 0.00075 43.1 11.0 209 378-612 87-296 (503)
150 cd05560 Xcc1710_like Xcc1710_l 65.3 22 0.00048 35.2 7.2 83 1140-1229 7-91 (109)
151 PF01735 PLA2_B: Lysophospholi 65.1 8.8 0.00019 48.0 5.4 50 542-591 2-57 (491)
152 COG4995 Uncharacterized protei 63.9 9.4 0.0002 46.3 5.1 36 1286-1321 359-394 (420)
153 PF00514 Arm: Armadillo/beta-c 63.0 6.6 0.00014 31.2 2.5 38 442-479 3-40 (41)
154 PF04826 Arm_2: Armadillo-like 62.6 17 0.00038 41.5 6.8 153 366-523 52-206 (254)
155 smart00022 PLAc Cytoplasmic ph 61.1 11 0.00025 47.4 5.4 59 538-596 75-138 (549)
156 PF13646 HEAT_2: HEAT repeats; 60.0 25 0.00053 32.4 6.3 59 455-524 3-62 (88)
157 PF13646 HEAT_2: HEAT repeats; 58.9 52 0.0011 30.2 8.3 82 415-518 5-88 (88)
158 KOG3864 Uncharacterized conser 55.9 2.5 5.4E-05 46.0 -1.4 32 266-297 151-185 (221)
159 cd02120 PA_subtilisin_like PA_ 55.8 12 0.00027 37.4 3.7 34 1193-1226 51-85 (126)
160 COG5064 SRP1 Karyopherin (impo 55.4 13 0.00029 43.1 4.1 104 418-521 252-355 (526)
161 smart00364 LRR_BAC Leucine-ric 54.4 7.8 0.00017 28.1 1.4 16 175-190 3-18 (26)
162 smart00364 LRR_BAC Leucine-ric 53.2 8.6 0.00019 27.9 1.4 17 198-214 3-19 (26)
163 KOG1325 Lysophospholipase [Lip 51.7 8.4 0.00018 48.1 2.0 60 538-597 47-111 (571)
164 smart00365 LRR_SD22 Leucine-ri 50.7 12 0.00027 27.1 1.9 13 289-301 3-15 (26)
165 cd07203 cPLA2_Fungal_PLB Funga 50.6 16 0.00035 45.9 4.2 63 539-601 63-134 (552)
166 cd04816 PA_SaNapH_like PA_SaNa 49.7 19 0.00042 36.1 3.9 36 1193-1228 43-78 (122)
167 KOG3763 mRNA export factor TAP 49.5 6.9 0.00015 48.4 0.8 62 217-279 215-283 (585)
168 smart00365 LRR_SD22 Leucine-ri 48.5 14 0.00029 26.9 1.9 18 265-282 1-18 (26)
169 cd00538 PA PA: Protease-associ 48.2 19 0.00041 35.8 3.7 34 1193-1226 46-79 (126)
170 COG1504 Uncharacterized conser 47.5 30 0.00064 33.9 4.5 52 1177-1228 46-100 (121)
171 PTZ00434 cytosolic glyceraldeh 46.5 21 0.00045 42.6 4.1 42 1180-1224 93-135 (361)
172 PRK00175 metX homoserine O-ace 44.9 40 0.00086 40.8 6.4 33 558-593 135-167 (379)
173 TIGR01392 homoserO_Ac_trn homo 43.0 50 0.0011 39.3 6.8 57 534-593 67-147 (351)
174 KOG3763 mRNA export factor TAP 42.1 11 0.00024 46.6 1.0 61 266-330 218-284 (585)
175 PF02225 PA: PA domain; Inter 41.5 26 0.00057 33.3 3.4 37 1189-1225 29-65 (101)
176 PF11698 V-ATPase_H_C: V-ATPas 41.3 42 0.00091 33.8 4.7 71 450-520 42-113 (119)
177 PRK01641 leuD isopropylmalate 39.5 23 0.0005 38.9 2.9 59 1162-1226 34-103 (200)
178 cd04818 PA_subtilisin_1 PA_sub 39.1 36 0.00078 33.8 4.0 34 1193-1226 40-73 (118)
179 cd02133 PA_C5a_like PA_C5a_lik 38.5 33 0.00071 35.5 3.7 33 1193-1225 47-79 (143)
180 PF13516 LRR_6: Leucine Rich r 38.0 15 0.00032 25.7 0.7 14 243-256 2-15 (24)
181 smart00846 Gp_dh_N Glyceraldeh 38.0 38 0.00083 35.4 4.1 42 1181-1225 77-119 (149)
182 PF00514 Arm: Armadillo/beta-c 36.7 41 0.00088 26.6 3.2 37 484-521 4-40 (41)
183 PF00694 Aconitase_C: Aconitas 36.0 33 0.00071 35.1 3.1 39 1189-1227 66-111 (131)
184 cd04819 PA_2 PA_2: Protease-as 34.9 41 0.0009 34.1 3.7 36 1192-1227 43-80 (127)
185 cd00248 Mth938-like Mth938-lik 34.3 59 0.0013 32.1 4.5 51 1179-1229 38-91 (109)
186 PRK11197 lldD L-lactate dehydr 33.6 65 0.0014 39.0 5.6 43 1179-1224 231-273 (381)
187 PF02985 HEAT: HEAT repeat; I 33.6 54 0.0012 24.4 3.2 28 495-522 2-29 (31)
188 PF05728 UPF0227: Uncharacteri 33.5 49 0.0011 36.0 4.2 17 575-591 61-77 (187)
189 TIGR02620 cas_VVA1548 putative 33.2 52 0.0011 31.4 3.6 46 1174-1231 23-68 (93)
190 PRK08775 homoserine O-acetyltr 33.2 99 0.0021 36.7 7.2 53 538-593 98-158 (343)
191 smart00185 ARM Armadillo/beta- 33.0 36 0.00078 26.3 2.3 35 445-479 6-40 (41)
192 cd04736 MDH_FMN Mandelate dehy 33.0 67 0.0014 38.7 5.5 42 1180-1224 223-264 (361)
193 KOG3678 SARM protein (with ste 32.9 47 0.001 40.1 4.1 106 426-532 239-346 (832)
194 PRK09687 putative lyase; Provi 32.8 2E+02 0.0043 33.4 9.3 125 376-521 62-187 (280)
195 KOG4242 Predicted myosin-I-bin 32.7 86 0.0019 38.6 6.2 204 125-331 214-455 (553)
196 KOG4500 Rho/Rac GTPase guanine 32.7 1.3E+02 0.0029 36.4 7.6 97 410-507 316-417 (604)
197 TIGR00171 leuD 3-isopropylmala 32.6 32 0.0007 37.4 2.6 59 1162-1226 34-105 (188)
198 cd04737 LOX_like_FMN L-Lactate 32.3 70 0.0015 38.4 5.6 42 1180-1224 208-249 (351)
199 PRK13585 1-(5-phosphoribosyl)- 31.9 64 0.0014 36.3 5.0 137 1080-1226 12-171 (241)
200 PRK09687 putative lyase; Provi 31.7 1.5E+02 0.0033 34.4 8.1 68 449-522 52-120 (280)
201 KOG1293 Proteins containing ar 31.7 96 0.0021 39.5 6.6 137 387-523 396-534 (678)
202 cd03332 LMO_FMN L-Lactate 2-mo 31.5 71 0.0015 38.8 5.5 44 1179-1225 239-282 (383)
203 PF09652 Cas_VVA1548: Putative 30.9 69 0.0015 30.7 4.0 48 1174-1233 23-70 (93)
204 PF12755 Vac14_Fab1_bd: Vacuol 30.9 1E+02 0.0023 29.8 5.5 68 447-515 23-90 (97)
205 KOG4813 Translation initiation 29.9 24 0.00053 39.1 1.1 13 1268-1280 34-46 (248)
206 PRK13604 luxD acyl transferase 29.8 92 0.002 36.7 5.8 50 538-592 63-127 (307)
207 cd00707 Pancreat_lipase_like P 29.8 1E+02 0.0022 35.6 6.3 52 539-592 66-131 (275)
208 PF13513 HEAT_EZ: HEAT-like re 29.1 1.1E+02 0.0024 25.7 4.8 50 428-478 6-55 (55)
209 PF11701 UNC45-central: Myosin 28.7 92 0.002 32.8 5.2 91 425-517 59-154 (157)
210 PLN02493 probable peroxisomal 28.1 99 0.0021 37.3 5.8 48 1178-1228 209-256 (367)
211 PRK07403 glyceraldehyde-3-phos 27.8 1.2E+02 0.0026 36.2 6.3 44 1180-1226 79-123 (337)
212 TIGR02708 L_lactate_ox L-lacta 27.5 94 0.002 37.5 5.5 45 1178-1225 213-257 (367)
213 PLN02965 Probable pheophorbida 27.2 1E+02 0.0023 34.5 5.7 18 576-593 75-92 (255)
214 PRK11071 esterase YqiA; Provis 27.1 1.5E+02 0.0032 32.2 6.6 50 539-593 32-81 (190)
215 cd04820 PA_M28_1_1 PA_M28_1_1: 27.0 68 0.0015 33.2 3.7 32 1193-1226 49-94 (137)
216 TIGR02087 LEUD_arch 3-isopropy 26.5 41 0.00089 35.4 2.0 57 1162-1227 25-84 (154)
217 cd01577 IPMI_Swivel Aconatase- 26.4 56 0.0012 31.3 2.7 34 1194-1227 18-54 (91)
218 smart00367 LRR_CC Leucine-rich 26.3 51 0.0011 23.5 1.9 24 370-393 1-24 (26)
219 PF10508 Proteasom_PSMB: Prote 26.1 1.9E+02 0.004 36.7 8.1 77 449-525 75-151 (503)
220 cd01674 Homoaconitase_Swivel H 26.0 58 0.0012 33.1 2.8 57 1162-1227 23-82 (129)
221 cd02130 PA_ScAPY_like PA_ScAPY 25.7 76 0.0017 31.7 3.8 35 1193-1227 44-78 (122)
222 PF00756 Esterase: Putative es 25.3 67 0.0015 35.9 3.7 36 556-593 100-135 (251)
223 KOG2171 Karyopherin (importin) 25.3 1.4E+02 0.0031 40.3 6.9 138 385-523 365-505 (1075)
224 PLN02535 glycolate oxidase 25.3 1.1E+02 0.0024 36.8 5.6 58 1163-1225 195-252 (364)
225 PLN02979 glycolate oxidase 24.7 1.1E+02 0.0024 36.8 5.3 46 1179-1227 209-254 (366)
226 smart00368 LRR_RI Leucine rich 24.7 56 0.0012 23.9 1.9 13 198-210 3-15 (28)
227 KOG1454 Predicted hydrolase/ac 24.5 1.4E+02 0.0031 35.4 6.4 49 539-593 86-148 (326)
228 PLN02730 enoyl-[acyl-carrier-p 24.5 61 0.0013 38.1 3.2 33 1192-1224 7-42 (303)
229 PRK04115 hypothetical protein; 24.5 87 0.0019 32.2 3.8 45 1099-1153 2-48 (137)
230 TIGR01305 GMP_reduct_1 guanosi 24.1 1.2E+02 0.0025 36.1 5.3 41 1182-1224 138-178 (343)
231 PRK06079 enoyl-(acyl carrier p 23.5 56 0.0012 36.8 2.6 36 1189-1224 2-40 (252)
232 cd01579 AcnA_Bact_Swivel Bacte 22.9 83 0.0018 31.8 3.3 58 1163-1228 25-86 (121)
233 PTZ00023 glyceraldehyde-3-phos 22.9 91 0.002 37.2 4.2 43 1181-1226 80-123 (337)
234 cd05125 Mth938_2P1-like Mth938 22.6 3E+02 0.0065 27.5 7.2 81 1141-1229 9-93 (114)
235 cd02922 FCB2_FMN Flavocytochro 22.4 1.3E+02 0.0028 36.0 5.5 44 1179-1225 199-242 (344)
236 cd04814 PA_M28_1 PA_M28_1: Pro 21.9 92 0.002 32.4 3.5 37 1192-1228 46-100 (142)
237 KOG2023 Nuclear transport rece 21.8 2.2E+02 0.0047 36.6 7.1 71 452-523 175-245 (885)
238 PRK15425 gapA glyceraldehyde-3 21.4 1E+02 0.0023 36.6 4.3 50 1181-1233 79-129 (331)
239 KOG1924 RhoA GTPase effector D 21.3 1.3E+02 0.0028 38.9 5.1 15 746-760 390-404 (1102)
240 PRK06552 keto-hydroxyglutarate 21.0 1.9E+02 0.004 32.3 6.0 81 1119-1226 105-185 (213)
241 cd02126 PA_EDEM3_like PA_EDEM3 20.8 1.1E+02 0.0024 30.9 3.9 33 1193-1225 40-72 (126)
242 PF02985 HEAT: HEAT repeat; I 20.7 85 0.0018 23.3 2.2 27 452-478 1-27 (31)
243 PRK15052 D-tagatose-1,6-bispho 20.0 1.2E+02 0.0027 36.8 4.5 124 1152-1311 43-210 (421)
No 1
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=100.00 E-value=2e-95 Score=816.68 Aligned_cols=761 Identities=65% Similarity=0.989 Sum_probs=604.7
Q ss_pred cCCCCchhHHHHHHhhhhhhcCCCCCCceEEeccCCCCCCccccccccccchhhhCCCCCCcEEEeeCCCCCCCCccccc
Q 000712 67 WTSGEEEDQVALKLQSQLMVALPVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIG 146 (1336)
Q Consensus 67 ~~~~~~~~~~~~~l~s~l~~~Lp~~~~~~~l~l~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~ 146 (1336)
|+.++.+|+++..+.+++|.++|.+.+.+++.++... ++ +.+++.+.+..-.+...++...+-.-.-++..-+..+
T Consensus 1 ~t~~~s~d~~~~~l~~~~~v~~~~~~~~~~~~~~~~~---~~-~l~~v~l~~~~~~~~~~~r~~~~~~~~~s~~~y~~~~ 76 (763)
T KOG4231|consen 1 WTAGDSEDQVALRLESQLMVALPAPHDTVVVELKDDD---EG-GLENVGLEMRVEKRREPLRAVTLMKAVGSGQQYDGVG 76 (763)
T ss_pred CCcccchhHHHHHhhhhhhhccCCCCceEEEEecccc---cc-ccchhhhhhhhhhcccchhhhHHHhhhcCCcccCCcc
Confidence 7888999999999999999999999999999998522 22 5566666666555555555443332222232223333
Q ss_pred CCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEE
Q 000712 147 VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLI 226 (1336)
Q Consensus 147 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 226 (1336)
.+.+|-.+-++--.--+..-....-.+...+.+.+++|.+-..|. .+..|+.|+.+.
T Consensus 77 ~~~~l~~~~~a~~ap~~~~~~~~~~~~~~~t~~s~s~~~~~~~~~-----------------------~vt~l~~~~~~~ 133 (763)
T KOG4231|consen 77 VLTRLMMMPAAIPAPAIDVASSCGVHWKTVTSLSLSGCGLLVMPV-----------------------EVTELPLLEKLC 133 (763)
T ss_pred hheeeeeeeccCCCcchhhhhceeeeeeeeeecccccceeccChH-----------------------HHHhhhhhhHHH
Confidence 444444443332110011111111123344444455554444444 444444555555
Q ss_pred ccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCCcc
Q 000712 227 VDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVADEN 305 (1336)
Q Consensus 227 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp-~l~~l~~L~~L~Ls~N~l~~~~~ 305 (1336)
+-.|+++.+|..++++.++..+.+. ..+..+..+.-+-.+.+.+|.+...+ .+..
T Consensus 134 ~~~~k~s~~~~li~k~~~~~i~r~~-----s~~d~l~~~~pf~e~s~~~~~~~~p~g~~~~------------------- 189 (763)
T KOG4231|consen 134 LEHNKLSVLPPLIGKLKNLKILRVD-----SVPDELRQCVPFVELSLEHNKLVRPLGDFRS------------------- 189 (763)
T ss_pred HHHhhhccchhhhhhhhhHHHhccC-----CccccccccCCchhhhhhccCccCCCccccc-------------------
Confidence 5555555444444444444333322 11122333333333334444433221 1100
Q ss_pred cccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcccccccccccccCcEEEcCCCcchh
Q 000712 306 LRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNRHVV 385 (1336)
Q Consensus 306 L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l~lp~~l~~L~~L~~L~Ls~N~~l~ 385 (1336)
+.. .-.+-.++.-+...|+...+.+|.-++|..+.+...+.+...+.+|...+...-+...++....=|+ .+++
T Consensus 190 ~~~-----~~~~ts~fg~S~~~lSn~~~~~Fk~~~~~~~~~~~~fv~k~e~e~n~~~iGk~~~~I~~~~~~ieS~-~hvV 263 (763)
T KOG4231|consen 190 LGQ-----RAENTSYFGASRHKLSNFSPLIFKSSSCHHPLLASTFVKKMEDEGNRSVIGKDENAIRQLISMIESD-QHVV 263 (763)
T ss_pred ccC-----cccccccccchhhhhhccchHhhccccccchhHHHHHHHHhhCcccceeecccchhhhhhccccccc-chhh
Confidence 000 1123344555666777777888888889999888888888899999987776666667777766665 7789
Q ss_pred HHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCCh
Q 000712 386 EQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNP 465 (1336)
Q Consensus 386 ~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~ 465 (1336)
+.+|..+..+.........|...+++......++...+. +...++.+..+++.++..++++..+..++.|++++.++|+
T Consensus 264 ek~~~~~~s~~~~~~~t~ql~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~ 342 (763)
T KOG4231|consen 264 EKACVALSSLARDVGVTMQLMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNP 342 (763)
T ss_pred cccccccccHHHHHHHHHHHHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccCh
Confidence 999999999988888999999999999877777777766 7888899999999999999999999999999999999999
Q ss_pred hhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhHhhcCCCCCCCCceEEEe
Q 000712 466 EVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPKQGLRILSM 545 (1336)
Q Consensus 466 ~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr~i~~~~~~~~~~rILsL 545 (1336)
++|+.+++++++++||.++|+.+.|++.|+..++++.....+++++.+..+++.+++++-+|+.+++||++++|+|||++
T Consensus 343 ~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~~eil~~~~~~~~vkg~G~rILSi 422 (763)
T KOG4231|consen 343 ELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGENEILRRSIKGRQVKGQGLRILSI 422 (763)
T ss_pred HHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhhhHHHHhhccccccCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhhHHH
Q 000712 546 DGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEAATW 625 (1336)
Q Consensus 546 DGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~~~w 625 (1336)
||||+||++++++|+.||+..|++||+.||+|||+|||||+|++|+..+|+++||+++|+++++.+|++..+.+++...|
T Consensus 423 DGGGtrG~~~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k~m~l~eCeEiY~~lgk~vFsq~v~~g~~~~sw 502 (763)
T KOG4231|consen 423 DGGGTRGLATLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVKLMTLEECEEIYKNLGKLVFSQSVPKGNEAASW 502 (763)
T ss_pred cCCCccchhHHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhcCccHHHHHHHHHHHhHHHhhccccccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred HHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCC-CcEEEeecCCCC
Q 000712 626 REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP-AQPFIFRNYQYP 704 (1336)
Q Consensus 626 ~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~-~~p~lFrny~~~ 704 (1336)
. .++|+++.+|++||++++ +++++...+..+++||+++|+|.++..+ .+||+||||++|
T Consensus 503 ~-------------------Hs~y~~n~we~iLKem~g-ed~~mi~tsr~~~~PkvavVStiVn~~pT~qpfIFRNY~hp 562 (763)
T KOG4231|consen 503 I-------------------HSKYSANEWERILKEMCG-EDGDMIITSRVKNVPKVAVVSTIVNVMPTAQPFIFRNYQHP 562 (763)
T ss_pred h-------------------hhhcchHHHHHHHHHHhh-hhhhHHHhhccCCCCceeehhhhhhcCCCccceeeeccCCC
Confidence 3 478999999999999998 5577777777889999999999999554 899999999999
Q ss_pred CCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCchHHH
Q 000712 705 AGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNPTIF 784 (1336)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNNPt~~ 784 (1336)
.+. .++|.|+|++.+|+|+|||+|||+||..|..++..++|||+++|||+..
T Consensus 563 ~G~----------------------------~Shy~Ggc~h~~WqAIrASsAAP~Yf~e~~lgn~l~QDGgi~aNNPta~ 614 (763)
T KOG4231|consen 563 VGT----------------------------QSHYMGGCKHQVWQAIRASSAAPYYFDEFSLGNYLWQDGGIVANNPTAF 614 (763)
T ss_pred CCc----------------------------chhhcccchHHHHHHHHhcccCCcchhhhccccceeccCcEeecCccHH
Confidence 765 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCEEEEeCCCCCCCCcCCCCcccccccchhhhhhhcHHHHHHHHHHHcccCCCCCEEEEccCCCCCC
Q 000712 785 AIREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTLLPMLPEIQYYRFNPVDERCE 864 (1336)
Q Consensus 785 Ai~EA~~l~p~~~i~~VVSIGTG~~~~~~~~~~w~~l~~~~~li~~~~s~d~v~~~~~~l~~~l~~~~YfRfnp~~~~~~ 864 (1336)
||+||+.+||+.+++|+||||||..++..+.++|.+...++.++++.++.+.+++.+.++.+++++..||||||.+.++
T Consensus 615 A~hEaklLWPD~~i~C~VSiGsGr~~t~Vr~~tv~yts~~~kL~~~i~SatdtEevh~~l~~mLPe~~YfRFNPvm~~~- 693 (763)
T KOG4231|consen 615 AIHEAKLLWPDTKIDCLVSIGSGRVPTRVRKGTVRYTSTGQKLIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRC- 693 (763)
T ss_pred HhhhhhccCCCCCccEEEEecCCcccccccCCceEEecHHHHHHHHHhcccchHHHHHhhhccCCchheEecchhhhcc-
Confidence 9999999999999999999999999999988999999999999988888888888888888999999999999999875
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCCCCChhhHHhhhhcccCCCCccCCccccCCccccc
Q 000712 865 MELDETDPAEWLKLEAAVDEYINNNSESFKNVCERLLLPFQQDEKWSENLKSQHFPRGKVSNTDEISPSLGWR 937 (1336)
Q Consensus 865 i~LDe~~~~~~~~l~~~t~~Yl~~n~~~~~~v~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1336)
++|||++++.|.+|+.++++|++.|.++|+++|++|..++..+++|-++... +...|.+.- +..+.++|+
T Consensus 694 ~~LDE~d~e~l~ql~~~~e~yI~rN~qk~k~vaerL~l~~~~~qk~~~~~~~--wm~lK~~~y-e~~p~~~~~ 763 (763)
T KOG4231|consen 694 MELDETDPEILLQLEAAIEEYIQRNPQKFKNVAERLTLPFLNDQKWCDLKPR--WMNLKLPRY-ESSPSLGWR 763 (763)
T ss_pred cCcCccCHHHHHHHHHHHHHHHHhChHHHHHHHHHhcCCcchhHHHhhhhHH--HHhccCccc-cCCcccccC
Confidence 9999999999999999999999999999999999999999999999832111 233344321 344566664
No 2
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=100.00 E-value=5.4e-52 Score=481.67 Aligned_cols=303 Identities=47% Similarity=0.779 Sum_probs=248.9
Q ss_pred CCCCCCCceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccc
Q 000712 533 RQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVF 612 (1336)
Q Consensus 533 ~~~~~~~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF 612 (1336)
+|++++++|||||||||+||+++++||++||+.++++++++||+|||||||||||++|+.++++++||+++|.+++++||
T Consensus 1 ~~~~~~~~riLsLdGGGirG~~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~~~iF 80 (308)
T cd07211 1 PPVKGRGIRILSIDGGGTRGVVALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLGKDVF 80 (308)
T ss_pred CCCCCCCcEEEEECCChHHHHHHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 35678899999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhh--hcCCCeEEEEEEeecc
Q 000712 613 AEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESS--VKNIPKVFTVSTLVNV 690 (1336)
Q Consensus 613 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~--~~~~~kv~vvsT~~d~ 690 (1336)
....+.. ...+.++.+++|+.+.++++|+++|++ ..+.+. ....|++++++|.++.
T Consensus 81 ~~~~~~~------------------~~~~~~~~~~~y~~~~l~~~l~~~~g~----~~l~~~~~~~~~p~~~v~st~~~~ 138 (308)
T cd07211 81 SQNTYIS------------------GTSRLVLSHAYYDTETWEKILKEMMGS----DELIDTSADPNCPKVACVSTQVNR 138 (308)
T ss_pred CCCcccc------------------chhhhhccCCccChHHHHHHHHHHhCC----ccccccccCCCCCEEEEEEEeccC
Confidence 7643210 001223457899999999999999953 222222 2356788888888888
Q ss_pred CCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcc
Q 000712 691 MPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFR 770 (1336)
Q Consensus 691 ~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~ 770 (1336)
.+.+|++|+||+++.+.. ..+.+.++.++|||+|||||||+||+|+++++..
T Consensus 139 ~~~~p~~f~ny~~~~~~~----------------------------~~~~~~~~~~l~dA~rASsAaP~~F~p~~i~~~~ 190 (308)
T cd07211 139 TPLKPYVFRNYNHPPGTR----------------------------SHYLGSCKHKLWEAIRASSAAPGYFEEFKLGNNL 190 (308)
T ss_pred CCCceEEEeCCCCCCCcc----------------------------cccCCcccccHHHHHHHhccchhcCCcEEECCCe
Confidence 899999999998764321 1122345789999999999999999999999999
Q ss_pred cccCcccCCchHHHHHHHHHHhCCCCCCCEEEEeCCCCCCCCcCCCCcccccccch---hhhhhhcHHHHHHHHHHHccc
Q 000712 771 WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQV---LIESACSVDRAEEALSTLLPM 847 (1336)
Q Consensus 771 ~vDGGl~aNNPt~~Ai~EA~~l~p~~~i~~VVSIGTG~~~~~~~~~~w~~l~~~~~---li~~~~s~d~v~~~~~~l~~~ 847 (1336)
|+|||+.+|||+.+|+.||+.+||+.+++||||||||..+.......++...|... ++..+++++.+++.++.++
T Consensus 191 ~vDGGv~aNnP~~~a~~ea~~~~~~~~i~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 268 (308)
T cd07211 191 HQDGGLLANNPTALALHEAKLLWPDTPIQCLVSVGTGRYPSSVRLETGGYTSLKTKLLNLIDSATDTERVHTALDDLL-- 268 (308)
T ss_pred EEECCcccCCcHHHHHHHHHHhCCCCCCcEEEEeCCCCCCCcccchhhhhHHHHHHHHHHHHHccChHHHHHHHHHhc--
Confidence 99999999999999999999999999999999999999876543212222234443 4446667788888887754
Q ss_pred CCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 000712 848 LPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNN 889 (1336)
Q Consensus 848 l~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~Yl~~n 889 (1336)
.+.+||||||.... +++||+++++.+++|++.|++|+++|
T Consensus 269 -~~~~Y~R~~~~~~~-~~~ld~~~~~~i~~l~~~~~~yl~~~ 308 (308)
T cd07211 269 -PPDVYFRFNPVMSE-CVELDETRPEKLDQLQDDTLEYIKRN 308 (308)
T ss_pred -CCCceEEecccccC-CCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 37899999999864 48999999999999999999999865
No 3
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.2e-48 Score=456.57 Aligned_cols=299 Identities=26% Similarity=0.415 Sum_probs=244.0
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhc-------CCCcccccceEEeechHHHHHHHHHc------ccCCHHHHHHHHHHh
Q 000712 541 RILSMDGGGMKGLATVQILKEIEKGT-------GKRIHELFDLVCGTSTGGMLAIALAV------KLMTLDQCEEIYKNL 607 (1336)
Q Consensus 541 rILsLDGGGiRGl~~l~iL~~Le~~~-------g~~i~~~FDlIaGTStGgIiA~~La~------~~~s~~e~~~~y~~l 607 (1336)
|||||||||+||+++++||++||+++ +.+++++||+|||||||||||++++. .+++++||.++|.+.
T Consensus 1 rILslDGGGirG~~~~~iL~~le~~l~~~~g~~~~~i~~~fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~ 80 (329)
T cd07215 1 RILSIDGGGIRGIIPATILVSVEEKLQKKTGNPEARLADYFDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLER 80 (329)
T ss_pred CEEEEcCChHHHHHHHHHHHHHHHHHhhhcCCCCCcHhhccCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHh
Confidence 79999999999999999999999975 35799999999999999999999864 468999999999999
Q ss_pred ccccccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEe
Q 000712 608 GKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTL 687 (1336)
Q Consensus 608 ~~~IF~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~ 687 (1336)
+++||..+. |.. +. ....+.+++|+.+.|+++|+++|+ +..+.+..++ +++++
T Consensus 81 ~~~IF~~~~--------~~~-~~---------~~~~~~~~~y~~~~L~~~L~~~fg----~~~l~d~~~~-----~~i~a 133 (329)
T cd07215 81 GNYIFKKKI--------WNK-IK---------SRGGFLNEKYSHKPLEEVLLEYFG----DTKLSELLKP-----CLITS 133 (329)
T ss_pred hHhhcccch--------hhh-hh---------hhccccccccCcHHHHHHHHHHhC----CCchhhhcCC-----ceEEe
Confidence 999997642 110 00 011245789999999999999994 4555554433 23455
Q ss_pred eccCCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeC
Q 000712 688 VNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD 767 (1336)
Q Consensus 688 ~d~~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~ 767 (1336)
+++.+++|++|+++....+. ..++++|||+|||||||+||+|+.++
T Consensus 134 ~d~~~~~~~~f~~~~~~~~~----------------------------------~~~~~l~da~~ASsAaP~~F~p~~i~ 179 (329)
T cd07215 134 YDIERRSPHFFKSHTAIKNE----------------------------------QRDFYVRDVARATSAAPTYFEPARIH 179 (329)
T ss_pred eecCCCCceEecCcccCCCc----------------------------------ccCccHHHHhHHHhhcccccCceEee
Confidence 79999999999987633110 22578999999999999999999885
Q ss_pred C-----cccccCcccCCchHHHHHHHHHHhCC------CCCCCEEEEeCCCCCCCCcC---CCCcccccccchhhh--hh
Q 000712 768 V-----FRWQDGAIVANNPTIFAIREAQLLWP------DTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE--SA 831 (1336)
Q Consensus 768 ~-----~~~vDGGl~aNNPt~~Ai~EA~~l~p------~~~i~~VVSIGTG~~~~~~~---~~~w~~l~~~~~li~--~~ 831 (1336)
+ ..|+|||+.+|||+.+|+.||+.+|. +.+..+|||||||..+.... ...|+.++|..++++ +.
T Consensus 180 ~~~g~~~~~vDGGv~aNnP~~~a~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~~~W~~~l~~~~~~ 259 (329)
T cd07215 180 SLTGEKYTLIDGGVFANNPTLCAYAEARKLKFEQPGKPTAKDMIILSLGTGKNKKSYTYEKVKDWGLLGWAKPLIDIMMD 259 (329)
T ss_pred cCCCcEEEEecCceecCCHHHHHHHHHHHhhccCcCCCCcCceEEEEecCCCCCCCCCHHHhcccCcccchHHHHHHHHh
Confidence 3 35899999999999999999999862 23446999999999865432 468999999999888 44
Q ss_pred hcHHHHHHHHHHHcc-cCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 000712 832 CSVDRAEEALSTLLP-MLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNNSESFKNVCERL 900 (1336)
Q Consensus 832 ~s~d~v~~~~~~l~~-~l~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~Yl~~n~~~~~~v~~~L 900 (1336)
...+.++..++.+++ ...+.+||||||.+....+.||+++++.++.|++.+++|++++.+.++++|++|
T Consensus 260 ~~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~l~~~~~~lD~a~~~~i~~L~~~~~~~~~~~~~~i~~~~~~~ 329 (329)
T cd07215 260 GASQTVDYQLKQIFDAEGDQQQYLRIQPELEDADPEMDDASPENLEKLREVGQALAEDHKDQLDEIVDRL 329 (329)
T ss_pred hhHHHHHHHHHHHHhhcCCCCceEEEeCCCCCCccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 556778888888775 334789999999987667889999999999999999999999999999999875
No 4
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=2.1e-48 Score=451.42 Aligned_cols=292 Identities=28% Similarity=0.423 Sum_probs=233.5
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcCC--------CcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhcccc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTGK--------RIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLV 611 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g~--------~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~I 611 (1336)
+|||||||||+||+++++||++||++++. +++|+||+|||||||||||++|+..+|+++||.++|.+++++|
T Consensus 1 ~rILslDGGGiRGl~~~~iL~~le~~l~~~~~~~~~~~~~~~fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~~i 80 (309)
T cd07216 1 LNLLSLDGGGVRGLSSLLILKEIMERIDPKEGLDEPPKPCDYFDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAKKI 80 (309)
T ss_pred CcEEEEcCCchhHHHHHHHHHHHHHHhhhccccCCCCChhHhcCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhHHh
Confidence 58999999999999999999999998763 7899999999999999999999987899999999999999999
Q ss_pred ccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCc--chhhhhhhcCCCeEEEEEEeec
Q 000712 612 FAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDG--DLLIESSVKNIPKVFTVSTLVN 689 (1336)
Q Consensus 612 F~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g--~~~~~~~~~~~~kv~vvsT~~d 689 (1336)
|..+.... .......+++|+.+.++++++++++...- ..++.+.....++++|++| +
T Consensus 81 F~~~~~~~-------------------~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~--~ 139 (309)
T cd07216 81 FSRKRLRL-------------------IIGDLRTGARFDSKKLAEAIKVILKELGNDEDDLLDEGEEDGCKVFVCAT--D 139 (309)
T ss_pred CCCCCccc-------------------cccccccCCCCChHHHHHHHHHHHHhcCCCchhhhccccccCCCEEEEEE--e
Confidence 97743221 01122346789999999999999854211 1111111134567777776 4
Q ss_pred cC-CCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee--
Q 000712 690 VM-PAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD-- 766 (1336)
Q Consensus 690 ~~-~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i-- 766 (1336)
.. +++|++|+||+.....+ .+.++++|||+|||||||+||+|+.+
T Consensus 140 ~~~~~~~~~f~~y~~~~~~~--------------------------------~~~~~~l~~a~rASsAaP~~f~p~~~~~ 187 (309)
T cd07216 140 KDVTGKAVRLRSYPSKDEPS--------------------------------LYKNATIWEAARATSAAPTFFDPVKIGP 187 (309)
T ss_pred eCCCCceEEEecCCCCCCCC--------------------------------cccCccHHHHHHHHhhhHhhCCCEEecC
Confidence 55 99999999998542210 13468899999999999999999999
Q ss_pred CCcccccCcccCCchHHHHHHHHHHhC--CCCCCCEEEEeCCCCCCCCcCCCCcccccccchhhhhhhcHHHHHHHHHHH
Q 000712 767 DVFRWQDGAIVANNPTIFAIREAQLLW--PDTRIDCLVSIGCGSVPTKTRRGGWRYLDTGQVLIESACSVDRAEEALSTL 844 (1336)
Q Consensus 767 ~~~~~vDGGl~aNNPt~~Ai~EA~~l~--p~~~i~~VVSIGTG~~~~~~~~~~w~~l~~~~~li~~~~s~d~v~~~~~~l 844 (1336)
++..|+|||+.+|||+.+|+.||+.+| ++.+++||||||||..+.......++...|...++++.++++..+..+...
T Consensus 188 ~~~~~vDGGv~~NnP~~~a~~ea~~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 267 (309)
T cd07216 188 GGRTFVDGGLGANNPIREVWSEAVSLWEGLARLVGCLVSIGTGTPSIKSLGRSAEGAGLLKGLKDLVTDTEAEAKRFSAE 267 (309)
T ss_pred CCceEecCCcccCCcHHHHHHHHHHHhCCCCCCccEEEEECCCCCCCcccccchhHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 899999999999999999999999999 677788999999999877654334445566677888888888777666554
Q ss_pred c-ccCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 000712 845 L-PMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYI 886 (1336)
Q Consensus 845 ~-~~l~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~Yl 886 (1336)
+ ..+.+.+||||||.++.+++++|++. +++.|++.|++|+
T Consensus 268 ~~~~~~~~~Y~R~n~~~~~~~~~ld~~~--~~~~l~~~t~~yl 308 (309)
T cd07216 268 HSELDEEGRYFRFNVPHGLEDVGLDEYE--KMEEIVSLTREYL 308 (309)
T ss_pred HhccCCCCeEEEECCCCCCCCCChhhhc--cHHHHHHHHHHhh
Confidence 3 23458899999999887788999964 6889999999997
No 5
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=100.00 E-value=3.1e-47 Score=439.15 Aligned_cols=285 Identities=30% Similarity=0.530 Sum_probs=219.0
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchh
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~ 621 (1336)
||||||||+||+++++||++||+.+|++++++||+|||||||||||++|+. +++++||+++|.++++++|.+.
T Consensus 1 ILsLDGGG~RGl~~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~-g~s~~e~~~~y~~~~~~iF~~~------ 73 (312)
T cd07212 1 LLCLDGGGIRGLVLIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLH-GKSLREARRLYLRMKDRVFDGS------ 73 (312)
T ss_pred CEEECCcHHHHHHHHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHc-CCCHHHHHHHHHHhhhhhCCCC------
Confidence 799999999999999999999999999999999999999999999999998 5999999999999999999652
Q ss_pred hHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
.+|+++.++++|+++|++. ..+.+ ...|+++|+++..+..+.++++|+||
T Consensus 74 -------------------------~~y~~~~le~~L~~~~g~~---~~l~d--~~~p~~~v~~~~~~~~~~~~~~f~ny 123 (312)
T cd07212 74 -------------------------RPYNSEPLEEFLKREFGED---TKMTD--VKYPRLMVTGVLADRQPVQLHLFRNY 123 (312)
T ss_pred -------------------------CCCCChHHHHHHHHHHCcC---ccccc--cCCCeEEEEeEeccCCCcCceeeecC
Confidence 3578899999999999532 13333 23567777766556567888999999
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCch
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNNP 781 (1336)
+.+....+.... .. ...+...++.++|+|+|||+|||+||+|+ ..|+|||+.+|||
T Consensus 124 ~~~~~~~~~~~~-------------------~~-~~~~~~~~~~~l~~a~rASsAaP~~F~p~----~~~vDGGv~~NnP 179 (312)
T cd07212 124 DPPEDVEEPEKN-------------------AN-FLPPTDPAEQLLWRAARSSGAAPTYFRPM----GRFLDGGLIANNP 179 (312)
T ss_pred CCCCCchhcccc-------------------cc-ccccCCcccccHHHHHHhhcccccccccc----cceecCceeccCh
Confidence 865432110000 00 00122345789999999999999999999 4699999999999
Q ss_pred HHHHHHHHHHhC----------CCCCCCEEEEeCCCCCCCCcC--------CCCccccc---c----cchhhhhhhcHHH
Q 000712 782 TIFAIREAQLLW----------PDTRIDCLVSIGCGSVPTKTR--------RGGWRYLD---T----GQVLIESACSVDR 836 (1336)
Q Consensus 782 t~~Ai~EA~~l~----------p~~~i~~VVSIGTG~~~~~~~--------~~~w~~l~---~----~~~li~~~~s~d~ 836 (1336)
+.+|+.|++.++ +..+++||||||||..+.+.. .+.|+... + ...+++.+++++.
T Consensus 180 ~~~a~~Ea~~~~~~~~~~~~~~~~~~i~~vvSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~t~t~~ 259 (312)
T cd07212 180 TLDAMTEIHEYNKTLKSKGRKNKVKKIGCVVSLGTGIIPQTPVNTVDVFRPSNPWELAKTVFGAKNLGKMVVDQCTASDG 259 (312)
T ss_pred HHHHHHHHHHhcccccccccCCCCCcccEEEEeCCCCCCCcccCCcccccCcchHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998642 456788999999999876421 12222221 1 2344556666654
Q ss_pred HHHHH-HHHcccCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Q 000712 837 AEEAL-STLLPMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYINNN 889 (1336)
Q Consensus 837 v~~~~-~~l~~~l~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~Yl~~n 889 (1336)
.+... +.+... .+.+||||||++. +++.||+++++++.+|+..|+.|+++|
T Consensus 260 ~~~~~~~~~~~~-~~~~Y~Rfn~~l~-~~~~lde~~~~~l~~l~~~~~~yi~~~ 311 (312)
T cd07212 260 APVDRARAWCES-IGIPYFRFSPPLS-KDIMLDETDDEDLVNMLWDTEVYIYTH 311 (312)
T ss_pred hHHHHHHHHHHh-cCCceEEeCCccC-CCcCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 44322 222222 2789999999986 799999999999999999999999876
No 6
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=100.00 E-value=9.6e-47 Score=441.92 Aligned_cols=297 Identities=25% Similarity=0.368 Sum_probs=235.1
Q ss_pred CCceEEEecCCchhHHHHHHHHHHHHHhc------CCCcccccceEEeechHHHHHHHHHcc------cCCHHHHHHHHH
Q 000712 538 QGLRILSMDGGGMKGLATVQILKEIEKGT------GKRIHELFDLVCGTSTGGMLAIALAVK------LMTLDQCEEIYK 605 (1336)
Q Consensus 538 ~~~rILsLDGGGiRGl~~l~iL~~Le~~~------g~~i~~~FDlIaGTStGgIiA~~La~~------~~s~~e~~~~y~ 605 (1336)
+++|||||||||+||+++++||++||+.+ +.+|+++||+|||||||||||++|+.+ .++++|+.++|.
T Consensus 2 ~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~ 81 (349)
T cd07214 2 KFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYL 81 (349)
T ss_pred CceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHH
Confidence 57999999999999999999999999986 568999999999999999999999974 489999999999
Q ss_pred HhccccccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEE
Q 000712 606 NLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVS 685 (1336)
Q Consensus 606 ~l~~~IF~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvs 685 (1336)
+.+.+||.++.... ..|... +. .+.+++|+++.|+++|+++|+ +..+.+..++ +++
T Consensus 82 ~~~~~iF~~~~~~~---~~~~~~----~~--------~~~~~~y~~~~L~~~L~~~~g----d~~l~d~~~~-----v~I 137 (349)
T cd07214 82 ENGPKIFPQSTGQF---EDDRKK----LR--------SLLGPKYDGVYLHDLLNELLG----DTRLSDTLTN-----VVI 137 (349)
T ss_pred HhhHHhcCCCcccc---hhHHHH----HH--------HhccCccCcHHHHHHHHHHhc----cccHhhhCCc-----eEE
Confidence 99999997642211 011111 11 123689999999999999994 5555554433 344
Q ss_pred EeeccCCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCccee
Q 000712 686 TLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFS 765 (1336)
Q Consensus 686 T~~d~~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~ 765 (1336)
+++|+.+++|++|++|+.+.+. ..++++|||||||||||+||+|+.
T Consensus 138 ~a~dl~~~~p~~F~~~~~~~~~----------------------------------~~~~~l~da~rASSAaPtyFpp~~ 183 (349)
T cd07214 138 PTFDIKLLQPVIFSSSKAKNDK----------------------------------LTNARLADVCISTSAAPTYFPAHY 183 (349)
T ss_pred EeEECCCCCeEEEeCccccCCc----------------------------------ccCcCHHHHHHHhcccccccCCeE
Confidence 5679999999999999744211 226789999999999999999998
Q ss_pred eCC---------cccccCcccCCchHHHHHHHHHHhC-------C-----CCCCCEEEEeCCCCCCCCcC---CCCcccc
Q 000712 766 DDV---------FRWQDGAIVANNPTIFAIREAQLLW-------P-----DTRIDCLVSIGCGSVPTKTR---RGGWRYL 821 (1336)
Q Consensus 766 i~~---------~~~vDGGl~aNNPt~~Ai~EA~~l~-------p-----~~~i~~VVSIGTG~~~~~~~---~~~w~~l 821 (1336)
++. ..|||||+.+|||+.+|+.||...+ + +.+..+|||||||..+.... ...|+.+
T Consensus 184 i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~wG~~ 263 (349)
T cd07214 184 FTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLVLSLGTGSAEESYKYNAAAKWGLI 263 (349)
T ss_pred eecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeEEEEEecCCCcccccChhhhccCCee
Confidence 752 4799999999999999999998652 1 12344899999999765432 4679888
Q ss_pred ccc-----chhhh--hhhcHHHHHHHHHHHccc-CCCCCEEEEccCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHhhHHH
Q 000712 822 DTG-----QVLIE--SACSVDRAEEALSTLLPM-LPEIQYYRFNPVDERCE-MELDETDPAEWLKLEAAVDEYINNNSES 892 (1336)
Q Consensus 822 ~~~-----~~li~--~~~s~d~v~~~~~~l~~~-l~~~~YfRfnp~~~~~~-i~LDe~~~~~~~~l~~~t~~Yl~~n~~~ 892 (1336)
+|. .++++ +....+.++..++++++. ..+.+|+||||...... ..+|+++++.++.|...+++|++++...
T Consensus 264 ~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~~ 343 (349)
T cd07214 264 TWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSR 343 (349)
T ss_pred ecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCcccc
Confidence 887 67887 555778899999988853 33679999999854333 6799999999999999999998877644
No 7
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=6.4e-40 Score=376.57 Aligned_cols=265 Identities=27% Similarity=0.420 Sum_probs=202.4
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~ 618 (1336)
++|||||||||+||+++++||++||+. +.++.++||+|+|||||||+|++|+.+ ++++++.++|.+....+|......
T Consensus 1 ~~riLsLdGGG~RGi~~~~vL~~Le~~-~~~~~~~fD~i~GTSaGaiia~~la~g-~~~~e~~~~~~~~~~~iF~~~~~~ 78 (288)
T cd07213 1 KYRILSLDGGGVKGIVQLVLLKRLAEE-FPSFLDQIDLFAGTSAGSLIALGLALG-YSPRQVLKLYEEVGLKVFSKSSAG 78 (288)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHHHHh-CcccccceeEEEEeCHHHHHHHHHHcC-cCHHHHHHHHHHhCccccCCCccc
Confidence 489999999999999999999999998 457889999999999999999999876 799999999999999999763211
Q ss_pred chhhHHHHHHHHHHhhhccccceeeecCCCcchH-HHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCc---
Q 000712 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSAD-QFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ--- 694 (1336)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~-~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~--- 694 (1336)
. .+.+.+|... .+++++++++ ++..+.+... +++| +++++.+++
T Consensus 79 ~-----------------------~~~~~~~~~~~~l~~~l~~~~----~~~~l~d~~~---~~~i--~a~~~~~~~~~~ 126 (288)
T cd07213 79 G-----------------------GAGNNQYFAAGFLKAFAEVFF----GDLTLGDLKR---KVLV--PSFQLDSGKDDP 126 (288)
T ss_pred c-----------------------ccccccCCchHHHHHHHHHHh----CcCCHhhcCC---CEEE--EEEeccCCCCCc
Confidence 1 1112334433 7888898888 4455555432 3333 445666664
Q ss_pred -----EEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCc
Q 000712 695 -----PFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVF 769 (1336)
Q Consensus 695 -----p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~ 769 (1336)
|++|+||.... ..+.++|||++||||||+||+|+ .
T Consensus 127 ~~~~~~~~f~n~~~~~------------------------------------~~~~~l~d~~~ASsAaP~~F~p~----~ 166 (288)
T cd07213 127 NRRWKPKLFHNFPGEP------------------------------------DLDELLVDVCLRSSAAPTYFPSY----Q 166 (288)
T ss_pred cccccceEeecCCCCC------------------------------------CccccHHHHHHHhccccccchhh----h
Confidence 79999876321 12568999999999999999999 6
Q ss_pred ccccCcccCCchHHHHHHHHHH---hCCCCCCCEEEEeCCCCCCCCcC----CCCcccccccchhhhh--hhcHHHHHHH
Q 000712 770 RWQDGAIVANNPTIFAIREAQL---LWPDTRIDCLVSIGCGSVPTKTR----RGGWRYLDTGQVLIES--ACSVDRAEEA 840 (1336)
Q Consensus 770 ~~vDGGl~aNNPt~~Ai~EA~~---l~p~~~i~~VVSIGTG~~~~~~~----~~~w~~l~~~~~li~~--~~s~d~v~~~ 840 (1336)
.|+|||+.+|||+..|+.||.. .+++.+..+|||||||..+.... ...|+...|..+++++ ....+.++..
T Consensus 167 ~~iDGGv~~NnP~~~a~~~a~~~~~~~~~~~~i~vlSiGtG~~~~~~~~~~~~~~~G~~~w~~~l~~~~~~~~~~~~~~~ 246 (288)
T cd07213 167 GYVDGGVFANNPSLCAIAQAIGEEGLNIDLKDIVVLSLGTGRPPSYLDGANGYGDWGLLQWLPDLLDLFMDAGVDAADFQ 246 (288)
T ss_pred ceecceeecCChHHHHHHHHHhccccCCCcccEEEEEecCCCCCCCccchhhccccceecccchhHHHHHHHHHHHHHHH
Confidence 7999999999999999999985 44445555999999999865442 4679999999888763 3444556666
Q ss_pred HHHHcccCCCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 000712 841 LSTLLPMLPEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDE 884 (1336)
Q Consensus 841 ~~~l~~~l~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~ 884 (1336)
++.++ +.+||||||.++ .. +|-.++++++.+.+.+++
T Consensus 247 ~~~~~----~~~y~Ri~~~l~-~~--~~~~~~~~i~~l~~~~~~ 283 (288)
T cd07213 247 CRQLL----GERYFRLDPVLP-AN--IDLDDNKQIEELVEIANT 283 (288)
T ss_pred HHHHc----cCcEEEeCCCCC-cc--cCccCHHHHHHHHHHHHh
Confidence 65543 789999999875 34 444557777777776654
No 8
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=1.2e-39 Score=369.29 Aligned_cols=244 Identities=34% Similarity=0.574 Sum_probs=201.1
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCCC--cccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGKR--IHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~~--i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
||||||||+||++++++|++||+.++.+ ++++||+|||||||||+|++++.+++++++|.++|.++++++|.
T Consensus 1 iLsldGGG~rG~~~~~~L~~le~~~~~~~~~~~~fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~~~if~------ 74 (258)
T cd07199 1 ILSLDGGGIRGIIPAEILAELEKRLGKPSRIADLFDLIAGTSTGGIIALGLALGRYSAEELVELYEELGRKIFP------ 74 (258)
T ss_pred CEEECCchHhHHHHHHHHHHHHHHhCCCCchhhccceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHhHhhcc------
Confidence 7999999999999999999999999887 99999999999999999999998889999999999987766652
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEee
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFr 699 (1336)
+ ++++++++.+++|++|+
T Consensus 75 ------------------------------------------------------------~--~~i~a~~~~~~~~~~f~ 92 (258)
T cd07199 75 ------------------------------------------------------------R--VLVTAYDLSTGKPVVFS 92 (258)
T ss_pred ------------------------------------------------------------C--eEEEEEEcCCCCeEEEE
Confidence 2 33445688899999999
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee----CCcccccCc
Q 000712 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD----DVFRWQDGA 775 (1336)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i----~~~~~vDGG 775 (1336)
||+..... ...+.++|||+|||||+|+||+|+.+ ++..|+|||
T Consensus 93 ~~~~~~~~---------------------------------~~~~~~l~d~~~ASsAaP~~f~p~~i~~~~~~~~~vDGG 139 (258)
T cd07199 93 NYDAEEPD---------------------------------DDDDFKLWDVARATSAAPTYFPPAVIESGGDEGAFVDGG 139 (258)
T ss_pred CCCCcccC---------------------------------CcCCccHHHHHHHHhcchhccCcEEeccCCCeeEEecCc
Confidence 99854210 12367899999999999999999999 889999999
Q ss_pred ccCCchHHHHHHHHHHhC-CCCCCCEEEEeCCCCCCCCcC---CCCcccccccchhhh--hhhcHHHHHHHHHHHcc-cC
Q 000712 776 IVANNPTIFAIREAQLLW-PDTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE--SACSVDRAEEALSTLLP-ML 848 (1336)
Q Consensus 776 l~aNNPt~~Ai~EA~~l~-p~~~i~~VVSIGTG~~~~~~~---~~~w~~l~~~~~li~--~~~s~d~v~~~~~~l~~-~l 848 (1336)
+.+|||+.+|+.||+..| ++.+..+|||||||..+.... ...|+...|...++. +....+..+.+++.+.. ..
T Consensus 140 v~~NnP~~~a~~ea~~~~~~~~~~~~vlSiGTG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (258)
T cd07199 140 VAANNPALLALAEALRLLAPDKDDILVLSLGTGTSPSSSSSKKASRWGGLGWGRPLLDILMDAQSDGVDQWLDLLFGSLD 219 (258)
T ss_pred cccCChHHHHHHHHHHhcCCCCCceEEEEecCCCCCCCcCHHHhhccCccccHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence 999999999999999954 566777999999999877654 345666677655544 55566666666666543 22
Q ss_pred CCCCEEEEccCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 000712 849 PEIQYYRFNPVDERCEMELDETDPAEWLKLEAAVDEYI 886 (1336)
Q Consensus 849 ~~~~YfRfnp~~~~~~i~LDe~~~~~~~~l~~~t~~Yl 886 (1336)
.+.+||||||........+|+.+.+++.++...+++|+
T Consensus 220 ~~~~y~R~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 257 (258)
T cd07199 220 SKDNYLRINPPLPGPIPALDDASEANLLALDSAAFELI 257 (258)
T ss_pred CCCeEEEEcCCCCCCcccchhCCHHHHHHHHHHHHHHh
Confidence 48999999999875445569999999999988888775
No 9
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=100.00 E-value=6.5e-38 Score=364.81 Aligned_cols=236 Identities=25% Similarity=0.383 Sum_probs=176.5
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcC-------CCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTG-------KRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVF 612 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g-------~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF 612 (1336)
.|||||||||+||+++++||++||+.++ .+++++||+|+|||||||||++++.+ ++++|+.++|.+.+.+||
T Consensus 1 ~rILsLDGGGiRGi~~~gvL~~LE~~l~~~~~~p~~~l~d~FDlIaGTStGgIIAa~la~g-~s~~ei~~~y~~~~~~iF 79 (344)
T cd07217 1 KKILALDGGGIRGLLSVEILGRIEKDLRTHLDDPEFRLGDYFDFVGGTSTGSIIAACIALG-MSVTDLLSFYTLNGVNMF 79 (344)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHHhhhccCCccccccccccEEEEecHHHHHHHHHHcC-CCHHHHHHHHHhhhhhhc
Confidence 4799999999999999999999999754 25799999999999999999999865 999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCC
Q 000712 613 AEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP 692 (1336)
Q Consensus 613 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~ 692 (1336)
..+. |... +. .....++|+.+.|+++|+++|+ +..+.+... .+.++++ ++++.+
T Consensus 80 ~~~~--------~~~~---l~--------~~~~~~~y~~~~L~~~L~~~fg----~~~l~d~~~-~~~l~i~--a~dl~t 133 (344)
T cd07217 80 DKAW--------LAQR---LF--------LNKLYNQYDPTNLGKKLNTVFP----ETTLGDDTL-RTLLMIV--TRNATT 133 (344)
T ss_pred Cchh--------hhhh---cc--------ccccccccCcHHHHHHHHHHcC----ceeeccccc-CceEEEE--EEecCC
Confidence 7632 1100 00 0001246999999999999994 444443211 1234443 458999
Q ss_pred CcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeC-----
Q 000712 693 AQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD----- 767 (1336)
Q Consensus 693 ~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~----- 767 (1336)
++|++|+|+........ + ......+.++|||+|||||||+||+|+.+.
T Consensus 134 g~p~~f~~~~~~~~~~~-----------------------~----~~~~~~~~~L~da~rASsAaPt~FpP~~i~~~~~~ 186 (344)
T cd07217 134 GSPWPVCNNPEAKYNDS-----------------------D----RSDCNLDLPLWQLVRASTAAPTFFPPEVVSIAPGT 186 (344)
T ss_pred CCeeEeecCchhhcccc-----------------------c----ccCcccCCcHHHHHHHHccCccccCceEEEecCCc
Confidence 99999998752110000 0 000123678999999999999999998752
Q ss_pred CcccccCccc-CCchHHHHHHHHHHh-----CC-CCCCCEEEEeCCCCCCCCcC---CCCcccccccchhhh
Q 000712 768 VFRWQDGAIV-ANNPTIFAIREAQLL-----WP-DTRIDCLVSIGCGSVPTKTR---RGGWRYLDTGQVLIE 829 (1336)
Q Consensus 768 ~~~~vDGGl~-aNNPt~~Ai~EA~~l-----~p-~~~i~~VVSIGTG~~~~~~~---~~~w~~l~~~~~li~ 829 (1336)
+..|||||++ +|||+.+|+.||... || .....+|||||||..+.... ...|+.++|..++++
T Consensus 187 ~~~lVDGGv~aaNNP~l~A~~ea~~~~~~~~~~~~~~~i~vlSiGTG~~~~~~~~~~~~~~g~~~w~~~l~~ 258 (344)
T cd07217 187 AFVFVDGGVTTYNNPAFQAFLMATAKPYKLNWEVGADNLLLVSVGTGFAPEARPDLKAADMWALDHAKYIPS 258 (344)
T ss_pred eEEEECCccccccCHHHHHHHHHHHhhhcccCCCCCCcEEEEEECCCCCCCCCccccccccChhhhHHHHHH
Confidence 3579999998 699999999999643 65 23445899999999876643 467999999887766
No 10
>COG3621 Patatin [General function prediction only]
Probab=99.97 E-value=6.2e-31 Score=286.56 Aligned_cols=196 Identities=29% Similarity=0.428 Sum_probs=150.6
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCC--
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPF-- 616 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~-- 616 (1336)
++|||+|||||+||.+++.+|+.||+..|+++|++||+|+|||+|||+|++|+.+ .+..|..+.|..-..++|....
T Consensus 8 k~rIlsldGGGvrG~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~-ks~~e~~qlF~~q~~q~f~ee~~~ 86 (394)
T COG3621 8 KYRILSLDGGGVRGAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALG-KSPRELKQLFSAQQAQIFPEEMKH 86 (394)
T ss_pred ceeEEEecCCccccHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcC-CCCchHHHHHHHhhhhhccHhhcc
Confidence 6999999999999999999999999999999999999999999999999999988 5999999999998888886531
Q ss_pred CCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCc-E
Q 000712 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ-P 695 (1336)
Q Consensus 617 ~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~-p 695 (1336)
...+.. +++ +. ++.-+..++|+.++|-++|+-++ +|..+.|...+ |+++.++....+ |
T Consensus 87 ~~fpv~-tFr----q~-------l~~a~~~pkys~~pLiK~lk~~~----~D~tlkDL~~~-----Vvv~~~~l~~~knp 145 (394)
T COG3621 87 RIFPVG-TFR----QL-------LSYALFSPKYSPQPLIKLLKFVC----KDYTLKDLIGR-----VVVPGYDLNNQKNP 145 (394)
T ss_pred CCCcch-hHh----hh-------hhhhhcCCcCCchhHHHHHHHhc----cccchhhhccc-----eEEEeeecccccCC
Confidence 111110 121 11 11224589999999999999776 46666665433 455667887777 6
Q ss_pred EEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCC------c
Q 000712 696 FIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDV------F 769 (1336)
Q Consensus 696 ~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~------~ 769 (1336)
..|.+-..+... ...+.++||+|.||+|||+|||||.... .
T Consensus 146 ~~t~~~~~~~~~---------------------------------ry~~~~LsDii~~stAAPtyFp~h~~~~i~~~k~~ 192 (394)
T COG3621 146 LFTFSTHHARPS---------------------------------RYNNYKLSDIILASTAAPTYFPPHHFENITNTKYH 192 (394)
T ss_pred ceeecccCcccc---------------------------------ccccchHHHHHHhcccCCcccCcccccccccccce
Confidence 666554322111 1236789999999999999999997632 3
Q ss_pred ccccCcccCCchHHH---HHHHH
Q 000712 770 RWQDGAIVANNPTIF---AIREA 789 (1336)
Q Consensus 770 ~~vDGGl~aNNPt~~---Ai~EA 789 (1336)
.|+|||+++|||+.. |+.++
T Consensus 193 ~~iDGGv~ANnPsla~~~al~~~ 215 (394)
T COG3621 193 PIIDGGVVANNPSLATWQALGLN 215 (394)
T ss_pred eeecceeeecChhHHHHHHhhhh
Confidence 699999999999987 55444
No 11
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=99.93 E-value=3.5e-24 Score=246.66 Aligned_cols=185 Identities=22% Similarity=0.382 Sum_probs=140.6
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCch
Q 000712 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDN 620 (1336)
Q Consensus 541 rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~ 620 (1336)
..|+|+|||+||++|+|||++||+. |+ .||+|+|||+||++|++++.+ ++.+++.+...+.... +
T Consensus 16 ~gLvL~GGG~RG~ahiGvL~aLee~-gi----~~d~v~GtSaGAi~ga~ya~g-~~~~~~~~~~~~~~~~-~-------- 80 (306)
T cd07225 16 IALVLGGGGARGCAHIGVIKALEEA-GI----PVDMVGGTSIGAFIGALYAEE-RNISRMKQRAREWAKD-M-------- 80 (306)
T ss_pred EEEEECChHHHHHHHHHHHHHHHHc-CC----CCCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHH-h--------
Confidence 5699999999999999999999997 43 389999999999999999877 7998888877654221 0
Q ss_pred hhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeec
Q 000712 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (1336)
Q Consensus 621 ~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrn 700 (1336)
...|. .++. +. +...+.|+.+.+++.|++++ ++..+++...+ +++++ +|+.++++++|+.
T Consensus 81 -~~~~~----~~~~-----~~-~~~~~~~~~~~~~~~l~~~~----~~~~~edl~~p---~~~va--tdl~tg~~~~~~~ 140 (306)
T cd07225 81 -TSIWK----KLLD-----LT-YPITSMFSGAAFNRSIHSIF----GDKQIEDLWLP---YFTIT--TDITASAMRVHTD 140 (306)
T ss_pred -HHHHH----HHhc-----cc-ccccccCChHHHHHHHHHHh----CCCCHHHcCCC---eEEEe--eecCCCCEEEecC
Confidence 00111 1111 11 12356789999999999999 45566665443 23444 4899999999874
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCccee--eCCcccccCcccC
Q 000712 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFS--DDVFRWQDGAIVA 778 (1336)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~--i~~~~~vDGGl~a 778 (1336)
. .+|+|+|||||+|++|+|+. +++..|+|||+.+
T Consensus 141 g--------------------------------------------~l~~avrAS~siP~~f~Pv~~~~~g~~~vDGGv~~ 176 (306)
T cd07225 141 G--------------------------------------------SLWRYVRASMSLSGYLPPLCDPKDGHLLMDGGYIN 176 (306)
T ss_pred C--------------------------------------------CHHHHHHHHhcCCeeccceEeCCCCeEEEeccccC
Confidence 3 38999999999999999995 7899999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCCEEEEeCCCCCC
Q 000712 779 NNPTIFAIREAQLLWPDTRIDCLVSIGCGSVP 810 (1336)
Q Consensus 779 NNPt~~Ai~EA~~l~p~~~i~~VVSIGTG~~~ 810 (1336)
|+|+..|+. + + .+..++|++||+...
T Consensus 177 n~Pv~~a~~----~-g-~~~ii~V~v~~~~~~ 202 (306)
T cd07225 177 NLPADVARS----M-G-AKTVIAIDVGSQDET 202 (306)
T ss_pred cchHHHHHH----C-C-cCEEEEEECCCCccc
Confidence 999999653 2 2 234478999998653
No 12
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=99.93 E-value=4.8e-25 Score=239.38 Aligned_cols=179 Identities=23% Similarity=0.326 Sum_probs=133.6
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|+|+|||+||++++++|++||+. +. .||+|+|||+||++|++++.+ ++.+++.++|..+....|....... .
T Consensus 2 Lvl~GGG~rG~~~~Gvl~~L~e~-~~----~~d~i~GtSaGai~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~~--~ 73 (194)
T cd07207 2 LVFEGGGAKGIAYIGALKALEEA-GI----LKKRVAGTSAGAITAALLALG-YSAADIKDILKETDFAKLLDSPVGL--L 73 (194)
T ss_pred eEEcCchHHHHHHHHHHHHHHHc-CC----CcceEEEECHHHHHHHHHHcC-CCHHHHHHHHHhCCHHHHhccchhh--h
Confidence 89999999999999999999986 32 369999999999999999876 7999999999988766664321000 0
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcch----hhhhhhc-CCCeEEEEEEeeccCCCcEEE
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDL----LIESSVK-NIPKVFTVSTLVNVMPAQPFI 697 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~----~~~~~~~-~~~kv~vvsT~~d~~~~~p~l 697 (1336)
..| ..+ +..++.|+.+.+++.+++.+....-+. .+.+... ..+++++++ +|+.++++++
T Consensus 74 ~~~----~~~----------~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~I~a--td~~tg~~~~ 137 (194)
T cd07207 74 FLL----PSL----------FKEGGLYKGDALEEWLRELLKEKTGNSFATSLLRDLDDDLGKDLKVVA--TDLTTGALVV 137 (194)
T ss_pred HHH----HHH----------HhhcCCccHHHHHHHHHHHHHhccCCcccchhhhhhccccCCcEEEEE--EECCCCCEEE
Confidence 011 111 123677899999999999885321110 0112122 334555554 4889999999
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeC-CcccccCcc
Q 000712 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDD-VFRWQDGAI 776 (1336)
Q Consensus 698 Frny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~-~~~~vDGGl 776 (1336)
|+..+.+ +..+|+|+|||||+|+||+|+.++ +..|+|||+
T Consensus 138 f~~~~~~---------------------------------------~~~l~~av~AS~AiP~~f~pv~i~~g~~~vDGG~ 178 (194)
T cd07207 138 FSAETTP---------------------------------------DMPVAKAVRASMSIPFVFKPVRLAKGDVYVDGGV 178 (194)
T ss_pred ecCCCCC---------------------------------------cccHHHHHHHHcCCCcccccEEeCCCeEEEeCcc
Confidence 8754311 456999999999999999999999 999999999
Q ss_pred cCCchHHH
Q 000712 777 VANNPTIF 784 (1336)
Q Consensus 777 ~aNNPt~~ 784 (1336)
.+|||+..
T Consensus 179 ~~n~Pv~~ 186 (194)
T cd07207 179 LDNYPVWL 186 (194)
T ss_pred ccCCCchh
Confidence 99999974
No 13
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=99.92 E-value=8.2e-25 Score=233.67 Aligned_cols=163 Identities=27% Similarity=0.330 Sum_probs=129.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchh
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~ 621 (1336)
-|+|+|||+||++++++|++||+. + ..||+|+|||+||++|++++.+ ++.+++.+.|......++....
T Consensus 2 ~Lvl~GGG~rG~~~~Gvl~~L~~~-~----~~~d~i~GtSaGal~a~~~a~g-~~~~~~~~~~~~~~~~~~~~~~----- 70 (175)
T cd07205 2 GLALSGGGARGLAHIGVLKALEEA-G----IPIDIVSGTSAGAIVGALYAAG-YSPEEIEERAKLRSTDLKALSD----- 70 (175)
T ss_pred eEEEeChhHHHHHHHHHHHHHHHc-C----CCeeEEEEECHHHHHHHHHHcC-CCHHHHHHHHHhhccchhhhhc-----
Confidence 499999999999999999999986 3 2499999999999999999866 8999999999865544332110
Q ss_pred hHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
| .....+.|+.+.+++.+++.++ ...+++.. .++.+++ +++.++++++|++.
T Consensus 71 ---~----------------~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~---~~l~i~a--~~l~~g~~~~f~~~ 122 (175)
T cd07205 71 ---L----------------TIPTAGLLRGDKFLELLDEYFG----DRDIEDLW---IPFFIVA--TDLTSGKLVVFRSG 122 (175)
T ss_pred ---c----------------ccccccccChHHHHHHHHHHcC----CCcHHHCC---CCEEEEE--EECCCCCEEEEcCC
Confidence 0 0123467889999999999884 44455443 2344444 48899999998732
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCch
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNNP 781 (1336)
.+|+|++||||+|+||+|++++++.|+|||+.+|||
T Consensus 123 --------------------------------------------~l~~av~AS~a~P~~f~pv~~~g~~~~DGG~~~n~P 158 (175)
T cd07205 123 --------------------------------------------SLVRAVRASMSIPGIFPPVKIDGQLLVDGGVLNNLP 158 (175)
T ss_pred --------------------------------------------CHHHHHHHHcccccccCCEEECCEEEEeccCcCCcc
Confidence 389999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000712 782 TIFAIR 787 (1336)
Q Consensus 782 t~~Ai~ 787 (1336)
+..|+.
T Consensus 159 ~~~a~~ 164 (175)
T cd07205 159 VDVLRE 164 (175)
T ss_pred HHHHHH
Confidence 998653
No 14
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.91 E-value=1.2e-23 Score=232.03 Aligned_cols=178 Identities=18% Similarity=0.165 Sum_probs=138.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchh
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNE 621 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~ 621 (1336)
.|+|+|||+||++++++|++||+. |. .+|+|+|||+|||+|++++.+ ++.+++.+.|.+...+-|
T Consensus 2 ~LvL~GGG~rG~~~~GvL~aL~e~-gi----~~~~i~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~--------- 66 (221)
T cd07210 2 ALVLSSGFFGFYAHLGFLAALLEM-GL----EPSAISGTSAGALVGGLFASG-ISPDEMAELLLSLERKDF--------- 66 (221)
T ss_pred eEEEcChHHHHHHHHHHHHHHHHc-CC----CceEEEEeCHHHHHHHHHHcC-CCHHHHHHHHHhcCHHHH---------
Confidence 499999999999999999999986 33 379999999999999999976 899999998887543222
Q ss_pred hHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
|.. .......+.|+.+.+++.+++.+. ...+.+.. .++++++ +|+.++++++|+++
T Consensus 67 ---~~~------------~~~~~~~g~~~~~~l~~~l~~~l~----~~~~~~~~---~~l~i~a--tdl~tg~~~~f~~~ 122 (221)
T cd07210 67 ---WMF------------WDPPLRGGLLSGDRFAALLREHLP----PDRFEELR---IPLAVSV--VDLTSRETLLLSEG 122 (221)
T ss_pred ---hhh------------ccccCCccccChHHHHHHHHHHcC----CCCHHHCC---CCeEEEE--EECCCCCEEEECCC
Confidence 100 011234567899999999999884 33444432 2344544 48899999999753
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCch
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNNP 781 (1336)
.+++|++||||+|+||+|+.+++..|+|||+.+|+|
T Consensus 123 --------------------------------------------~l~~av~AS~aiP~~f~Pv~i~g~~~vDGGv~~n~P 158 (221)
T cd07210 123 --------------------------------------------DLAEAVAASCAVPPLFQPVEIGGRPFVDGGVADRLP 158 (221)
T ss_pred --------------------------------------------CHHHHHHHHcccccccCCEEECCEEEEecccccccc
Confidence 289999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEeCCCCC
Q 000712 782 TIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (1336)
Q Consensus 782 t~~Ai~EA~~l~p~~~i~~VVSIGTG~~ 809 (1336)
+..|+ ++. +..++|+++++..
T Consensus 159 i~~~~------~~~-~~ii~v~~~~~~~ 179 (221)
T cd07210 159 FDALR------PEI-ERILYHHVAPRRP 179 (221)
T ss_pred HHHHh------cCC-CEEEEEECCCCCC
Confidence 99876 322 3346888888764
No 15
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=99.90 E-value=4.6e-23 Score=220.16 Aligned_cols=162 Identities=22% Similarity=0.295 Sum_probs=122.7
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhc-cccccCCCCCch
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEPFPKDN 620 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~-~~IF~~~~~~~~ 620 (1336)
-|+|+|||+||++++++|++||+. +. .||+|+|||+|||+|++++.+ ++.+++.... ++. ++++.
T Consensus 2 ~LvL~GGG~rG~~~~Gvl~~L~e~-g~----~~d~i~GtSaGAi~aa~~a~g-~~~~~~~~~~-~~~~~~~~~------- 67 (175)
T cd07228 2 GLALGSGGARGWAHIGVLRALEEE-GI----EIDIIAGSSIGALVGALYAAG-HLDALEEWVR-SLSQRDVLR------- 67 (175)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHC-CC----CeeEEEEeCHHHHHHHHHHcC-CCHHHHHHHH-hhhHHHHHh-------
Confidence 499999999999999999999986 32 389999999999999999876 6777664432 111 11110
Q ss_pred hhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeec
Q 000712 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (1336)
Q Consensus 621 ~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrn 700 (1336)
.+.. . ....+.++.+.+++.+++.+. +..+++.. .++++++| |+.++++++|++
T Consensus 68 -----------~~~~---~---~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~---~~l~i~at--~~~tg~~~~f~~ 121 (175)
T cd07228 68 -----------LLDL---S---ASRSGLLKGEKVLEYLREIMG----GVTIEELP---IPFAAVAT--DLQTGKEVWFRE 121 (175)
T ss_pred -----------hccc---C---CCcccccCHHHHHHHHHHHcC----CCCHHHCC---CCEEEEEE--ECCCCCEEEECC
Confidence 0000 0 123466888999999999884 34455443 24445544 889999999974
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCc
Q 000712 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (1336)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNN 780 (1336)
. .+++|++||||+|++|+|+.+++..|+|||+..|.
T Consensus 122 ~--------------------------------------------~l~~av~AS~a~P~~f~p~~~~g~~~vDGG~~~~~ 157 (175)
T cd07228 122 G--------------------------------------------SLIDAIRASISIPGIFAPVEHNGRLLVDGGVVNPI 157 (175)
T ss_pred C--------------------------------------------CHHHHHHHHcccCccccCEEECCEEEEeccCcCCC
Confidence 2 28999999999999999999999999999999999
Q ss_pred hHHHHHH
Q 000712 781 PTIFAIR 787 (1336)
Q Consensus 781 Pt~~Ai~ 787 (1336)
|+..|+.
T Consensus 158 P~~~a~~ 164 (175)
T cd07228 158 PVSVARA 164 (175)
T ss_pred cHHHHHH
Confidence 9988543
No 16
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.89 E-value=2.1e-22 Score=221.87 Aligned_cols=169 Identities=24% Similarity=0.325 Sum_probs=126.6
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCC--HHHHHHHHHHhccc-cccCCCCCc
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMT--LDQCEEIYKNLGKL-VFAEPFPKD 619 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s--~~e~~~~y~~l~~~-IF~~~~~~~ 619 (1336)
|+|+|||+||++++|+|++|++. | + .||+|+|||+||++|++++.+ .+ .+++.++|.++... +|
T Consensus 1 LvL~GGG~rG~~~~Gvl~aL~e~-g--~--~~d~i~GtS~GAl~aa~~a~~-~~~~~~~l~~~~~~~~~~~~~------- 67 (215)
T cd07209 1 LVLSGGGALGAYQAGVLKALAEA-G--I--EPDIISGTSIGAINGALIAGG-DPEAVERLEKLWRELSREDVF------- 67 (215)
T ss_pred CEecccHHHHHHHHHHHHHHHHc-C--C--CCCEEEEECHHHHHHHHHHcC-CcHHHHHHHHHHHhCChhhHH-------
Confidence 78999999999999999999997 3 2 599999999999999999876 56 78888888875421 11
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEee
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFr 699 (1336)
++.++++.+. ...+.+.....+++++++ ++..++++++|+
T Consensus 68 ----------------------------------l~~~~~~~~~----~~~~~~~~~~~~~l~i~a--t~~~tg~~~~f~ 107 (215)
T cd07209 68 ----------------------------------LRGLLDRALD----FDTLRLLAILFAGLVIVA--VNVLTGEPVYFD 107 (215)
T ss_pred ----------------------------------HHHHHHHhCC----HHHHhhccccCceEEEEE--EEcCCCCEEEEe
Confidence 3333444331 112222111113455544 489999999999
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCC
Q 000712 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVAN 779 (1336)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aN 779 (1336)
+.+ ...+++|++||||+|+||+|+.+++..|+|||+.+|
T Consensus 108 ~~~-----------------------------------------~~~~~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~n 146 (215)
T cd07209 108 DIP-----------------------------------------DGILPEHLLASAALPPFFPPVEIDGRYYWDGGVVDN 146 (215)
T ss_pred CCC-----------------------------------------cchHHHHHHHhccccccCCCEEECCeEEEcCccccC
Confidence 764 135899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCCCCCCEEEEeCCCCCCC
Q 000712 780 NPTIFAIREAQLLWPDTRIDCLVSIGCGSVPT 811 (1336)
Q Consensus 780 NPt~~Ai~EA~~l~p~~~i~~VVSIGTG~~~~ 811 (1336)
+|+..|+. . +.+..+||+++++....
T Consensus 147 ~Pv~~a~~-----~-g~~~iivv~~~~~~~~~ 172 (215)
T cd07209 147 TPLSPAID-----L-GADEIIVVSLSDKGRDD 172 (215)
T ss_pred cCHHHHHh-----c-CCCEEEEEECCCccccc
Confidence 99999777 2 23333788888876543
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=5.8e-25 Score=254.56 Aligned_cols=278 Identities=21% Similarity=0.254 Sum_probs=155.3
Q ss_pred hhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCC-CCCccccCCCCCcEEEcCCCCCCccccccCCCCC
Q 000712 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPV 198 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~ 198 (1336)
.+..|.+|++|.+++|++.. +...++.|+.|+.+++..|++-.. +|+..| .|..|+.||||+|+|++.|..+..-++
T Consensus 50 EL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn 127 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKN 127 (1255)
T ss_pred HHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcC
Confidence 34455555555555555543 334455555555555555554332 233333 555555555555555555555555555
Q ss_pred CcEEEcCCCCCCCCcccc-CCCCCCcEEEccCCcCccccccccCCCCCCEEEecccccc---------------------
Q 000712 199 LEKLYLDNNKLSTLPPEL-GAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLV--------------------- 256 (1336)
Q Consensus 199 L~~L~Ls~N~L~~lp~~l-~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~--------------------- 256 (1336)
+-.|+||+|+|..+|..+ -+|+.|-+||||+|++..+|..+..|..|++|.|++|.+.
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc
Confidence 555555555555555433 4555555555555555555555555555555555555442
Q ss_pred -----CCccccCCCCCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCcc
Q 000712 257 -----RPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 257 -----~~~~~l~~L~~L~~L~Ls~N~L~~lp-~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
.+|+++..+.+|..++|+.|.+..+| .+.++++|+.|+|++|+|+.+..-.. ...+++.|+++.|+++.
T Consensus 208 qRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~-----~W~~lEtLNlSrNQLt~ 282 (1255)
T KOG0444|consen 208 QRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEG-----EWENLETLNLSRNQLTV 282 (1255)
T ss_pred cchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHH-----HHhhhhhhccccchhcc
Confidence 23334555566666666666666555 45566666666666666666422111 13456666666666666
Q ss_pred ccccccccC--------CCCch--hhHHHHHhh-----hhcCCCcc-cccccccccccCcEEEcCCCcchhHHHhhhhcc
Q 000712 331 FFSLIFRFS--------SCHHP--LLASALAKI-----MQDQENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALSS 394 (1336)
Q Consensus 331 ~~~~l~~Ls--------~l~~~--~l~~~L~~l-----L~Ls~N~l-~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~ 394 (1336)
++..+..|+ ++++. -+|+.++++ +...+|.+ .+|+.+..+..|+.|.|+.|+ |.+
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr---------LiT 353 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR---------LIT 353 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc---------eee
Confidence 664443222 22222 345555555 34455555 556666666666666666666 666
Q ss_pred CccChhhhcccccccCcch
Q 000712 395 LAGDVSVAMLLMKCDIMQP 413 (1336)
Q Consensus 395 Lp~~~~~l~~L~~L~i~~~ 413 (1336)
||+.|.-+..|..||+..|
T Consensus 354 LPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 354 LPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred chhhhhhcCCcceeeccCC
Confidence 6766666666666666555
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-23 Score=241.33 Aligned_cols=311 Identities=19% Similarity=0.183 Sum_probs=220.6
Q ss_pred CCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccc-cccCCCCCCcEEEc
Q 000712 126 PLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLYL 204 (1336)
Q Consensus 126 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp-~~l~~L~~L~~L~L 204 (1336)
.-+.|+|++|+++..-+..|.++++|+.++|.+|. ... .|.+.....+|+.|+|.+|.|+++. +.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTR-IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhh-cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34568888888888777888888888888888885 333 3444445667888888888888776 45777888888888
Q ss_pred CCCCCCCCcc-ccCCCCCCcEEEccCCcCccccc-cccCCCCCCEEEeccccccCCcc-ccCCCCCCcEEEccCCCCCCC
Q 000712 205 DNNKLSTLPP-ELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNPLEFL 281 (1336)
Q Consensus 205 s~N~L~~lp~-~l~~L~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~l~~~~~-~l~~L~~L~~L~Ls~N~L~~l 281 (1336)
|.|.|+.+|. .+..-.+|++|+|++|.|+.+-. .|..+.+|..|.|+.|+|+.++. .|++|++|+.|+|..|+|...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 8888887763 45555788888888888885543 56777888888888888888875 578888888888888888855
Q ss_pred C--CCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccc-cccccCCCCchhhHHHHHhhhhcCC
Q 000712 282 P--EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLASALAKIMQDQE 358 (1336)
Q Consensus 282 p--~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~-~l~~Ls~l~~~~l~~~L~~lL~Ls~ 358 (1336)
. .|..+++|+.|.|..|.|..+.+=. +..+.+++.|++..|++..... .++.|..++. |+|++
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~----------L~lS~ 302 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ----------LDLSY 302 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcc----eeeecccceeecccchhhhhhcccccccchhhh----------hccch
Confidence 4 6778888888888888888743211 2237788888888888887654 4455555543 67777
Q ss_pred Ccc-cc-cccccccccCcEEEcCCCcchhHHHhhhhccCcc-ChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhc
Q 000712 359 NRV-VV-GKDENAVRQLISMISSDNRHVVEQACSALSSLAG-DVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQ 435 (1336)
Q Consensus 359 N~l-~l-p~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~-~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~ 435 (1336)
|.+ .| ++.....++|+.|+|++|+ |..|++ .+..+..|.+|++++|-+..+... ...++..|..
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~---------i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~----af~~lssL~~ 369 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNR---------ITRLDEGSFRVLSQLEELNLSHNSIDHLAEG----AFVGLSSLHK 369 (873)
T ss_pred hhhheeecchhhhcccceeEeccccc---------cccCChhHHHHHHHhhhhcccccchHHHHhh----HHHHhhhhhh
Confidence 777 33 3334566778888888887 777776 567777788888887766555433 4446666666
Q ss_pred cccccchHHHhhhchH----HHHHHHHHHhcCCh
Q 000712 436 LAFASDTVAQKMLTKD----VLKSLKLLCAHKNP 465 (1336)
Q Consensus 436 L~~~~~~i~~~l~~~~----lL~~L~~l~~~~~~ 465 (1336)
|.+.++.++.-+-+.. -|+.|..+-..+|.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq 403 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ 403 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCce
Confidence 6666666654442211 15566655555554
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.6e-25 Score=255.40 Aligned_cols=285 Identities=21% Similarity=0.256 Sum_probs=224.0
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCC--ccccccCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS--ALPVDLTRL 196 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~--~lp~~l~~L 196 (1336)
.....++.++.|.|...++.. +|+.++.|.+|++|.+++|+++. +. ..+..|+.|+.+.+..|+|. .+|..++.|
T Consensus 26 ~~v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~~-vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 26 HDVEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLIS-VH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred hhHHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhHh-hh-hhhccchhhHHHhhhccccccCCCCchhccc
Confidence 356678899999999988765 89999999999999999997432 22 33458899999999999988 799999999
Q ss_pred CCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccc-cCCCCCCEEEeccccccCCccccCCCCCCcEEEccC
Q 000712 197 PVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVEL-RECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG 275 (1336)
Q Consensus 197 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l-~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~ 275 (1336)
..|..||||+|+++.+|..+..-+++-.|+||+|+|.+||..+ -+|+.|-.||||+|++..+||.+..|.+|++|.|++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999876 688999999999999999999999999999999999
Q ss_pred CCCC--CCCCCCCCCCC-------------------------CEEEccCCCCCCC-cccccccccccCCCCCeeccCCCC
Q 000712 276 NPLE--FLPEILPLLKL-------------------------RHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHK 327 (1336)
Q Consensus 276 N~L~--~lp~l~~l~~L-------------------------~~L~Ls~N~l~~~-~~L~~L~~~l~L~~L~~L~ls~N~ 327 (1336)
|.+. .+..+-.+++| ..++|+.|.+... ..+. .+.+|+.|++++|+
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly------~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY------KLRNLRRLNLSGNK 256 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHh------hhhhhheeccCcCc
Confidence 9875 22222233444 4444454444432 2222 36677888888888
Q ss_pred Cccccc--------cccccCCCCchhhHHHHHhh-----hhcCCCcc---cccccccccccCcEEEcCCCcchhHHHhhh
Q 000712 328 LSAFFS--------LIFRFSSCHHPLLASALAKI-----MQDQENRV---VVGKDENAVRQLISMISSDNRHVVEQACSA 391 (1336)
Q Consensus 328 L~~~~~--------~l~~Ls~l~~~~l~~~L~~l-----L~Ls~N~l---~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~ 391 (1336)
|+.+.. ..++++.+++..+|.++.++ |.+.+|.+ -||..+++|.+|+.+..++|.
T Consensus 257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~--------- 327 (1255)
T KOG0444|consen 257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK--------- 327 (1255)
T ss_pred eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc---------
Confidence 877652 12677777777777666655 66677766 678888888888888888887
Q ss_pred hccCccChhhhcccccccCcchhHhhhcCC
Q 000712 392 LSSLAGDVSVAMLLMKCDIMQPIIAVLKSF 421 (1336)
Q Consensus 392 L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~ 421 (1336)
|.-.|++++++..|+.|.+.+|-+-.|+..
T Consensus 328 LElVPEglcRC~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred cccCchhhhhhHHHHHhcccccceeechhh
Confidence 888888888888888888888765555543
No 20
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=99.87 E-value=8.4e-22 Score=222.04 Aligned_cols=184 Identities=26% Similarity=0.286 Sum_probs=130.1
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCch
Q 000712 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDN 620 (1336)
Q Consensus 541 rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~ 620 (1336)
.-|+|+|||+||++|+|||++||+. |++ ||+|+|||+||++|++++.+ +++.++.+..++...+.+
T Consensus 11 igLVL~GGGaRG~ahiGVL~aLeE~-gi~----~d~v~GtSaGAiiga~ya~g-~~~~~~~~r~~~~~~~~~-------- 76 (269)
T cd07227 11 IGLVLGGGGARGISHIGILQALEEA-GIP----IDAIGGTSIGSFVGGLYARE-ADLVPIFGRAKKFAGRMA-------- 76 (269)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHc-CCC----ccEEEEECHHHHHHHHHHcC-CchHHHHHHHHHHHHHHh--------
Confidence 5699999999999999999999986 433 89999999999999999976 688777654433221111
Q ss_pred hhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeec
Q 000712 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (1336)
Q Consensus 621 ~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrn 700 (1336)
..|....+..+ ...+.+....+...+.+.+ ++..+++... .+++++| |+.++++.+|++
T Consensus 77 --~~~~~l~d~~~----------p~~~~~~g~~~~~~l~~~~----~~~~iedl~~---pf~~~aT--dl~tg~~~~~~~ 135 (269)
T cd07227 77 --SMWRFLSDVTY----------PFASYTTGHEFNRGIWKTF----GNTHIEDFWI---PFYANST--NITHSRMEIHSS 135 (269)
T ss_pred --HHHHHHhhccc----------ccccccchhHHHHHHHHHc----CcCCHHHCCC---CEEEEEE--ECCCCCEEEecC
Confidence 11221111101 0012233444555677776 3445565432 2345554 899999999874
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCc
Q 000712 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (1336)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNN 780 (1336)
. .+|+|+|||||+|++|+|+.+++..|+|||+.+|.
T Consensus 136 g--------------------------------------------~l~~avrAS~slPg~~pPv~~~G~~~vDGGv~dnl 171 (269)
T cd07227 136 G--------------------------------------------YAWRYIRASMSLAGLLPPLSDNGSMLLDGGYMDNL 171 (269)
T ss_pred C--------------------------------------------CHHHHHHHHccchhcCCCEEECCEEEEcccCCccH
Confidence 3 28999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEeCCCCC
Q 000712 781 PTIFAIREAQLLWPDTRIDCLVSIGCGSV 809 (1336)
Q Consensus 781 Pt~~Ai~EA~~l~p~~~i~~VVSIGTG~~ 809 (1336)
|+..+ +++. .+..++|.+|++..
T Consensus 172 Pv~~~----~~~G--~~~ii~V~v~~~~~ 194 (269)
T cd07227 172 PVSPM----RSLG--IRDIFAVDVGSVDD 194 (269)
T ss_pred hHHHH----HHcC--CCEEEEEECCCcCC
Confidence 99874 4332 34447899987653
No 21
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=3.7e-22 Score=267.07 Aligned_cols=268 Identities=20% Similarity=0.226 Sum_probs=191.7
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCccccc-CCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCC-ccccccCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIG-VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRL 196 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~-~lp~~l~~L 196 (1336)
..+..+++|+.|+|++|.+++.+|..+. .+++|++|+|++|++.+.++. +.+++|++|+|++|.++ .+|..+.++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcC
Confidence 4577788888888888888877776654 788888888888876655544 35678888888888876 677778888
Q ss_pred CCCcEEEcCCCCCC-CCccccCCCCCCcEEEccCCcCc-cccccccCCCCCCEEEeccccccCCc-cccCCCCCCcEEEc
Q 000712 197 PVLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRL 273 (1336)
Q Consensus 197 ~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~-~~l~~L~~L~~L~L 273 (1336)
++|++|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..+.++++|++|+|++|.+.+.. ..+.++++|++|+|
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 88888888888876 77777888888888888888877 67778888888888888888887654 35788888888888
Q ss_pred cCCCCC-CCC-CCCCCCCCCEEEccCCCCCC--CcccccccccccCCCCCeeccCCCCCccccc-cccccCCCCchhhHH
Q 000712 274 FGNPLE-FLP-EILPLLKLRHLSLANIRIVA--DENLRSVNVQIEMENNSYFGASRHKLSAFFS-LIFRFSSCHHPLLAS 348 (1336)
Q Consensus 274 s~N~L~-~lp-~l~~l~~L~~L~Ls~N~l~~--~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~-~l~~Ls~l~~~~l~~ 348 (1336)
++|.++ .+| .+.++++|+.|+|++|.+.+ +..+.. +.+|+.|++++|.+.+..+ .+.++.+++.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~----- 312 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS------LQKLISLDLSDNSLSGEIPELVIQLQNLEI----- 312 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh------ccCcCEEECcCCeeccCCChhHcCCCCCcE-----
Confidence 888876 444 67788888888888888765 233333 6678888888888776544 2233333322
Q ss_pred HHHhhhhcCCCcc--cccccccccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcch
Q 000712 349 ALAKIMQDQENRV--VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQP 413 (1336)
Q Consensus 349 ~L~~lL~Ls~N~l--~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~ 413 (1336)
|++++|.+ .+|..+..+++|+.|+|++|.. ...+|..+..+.+|+.+++..+
T Consensus 313 -----L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l--------~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 313 -----LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF--------SGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred -----EECCCCccCCcCChhHhcCCCCCEEECcCCCC--------cCcCChHHhCCCCCcEEECCCC
Confidence 45555555 4555566666666666666662 2245555555566666666554
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=5.1e-22 Score=265.75 Aligned_cols=287 Identities=20% Similarity=0.230 Sum_probs=190.1
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCC-ccccccCCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLP 197 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~-~lp~~l~~L~ 197 (1336)
..+.++++|+.|+|++|.+++.+|..+.++++|+.|+|++|++.+..+. .+.++++|++|+|++|.++ .+|..+.+++
T Consensus 230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 4577889999999999999888898999999999999999976555444 4458888999999998887 6777788888
Q ss_pred CCcEEEcCCCCCC-CCccccCCCCCCcEEEccCCcCc-cccccccCCCCCCEEEeccccccCCcc-ccCCCCCCcEEEcc
Q 000712 198 VLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~~-~l~~L~~L~~L~Ls 274 (1336)
+|++|++++|.++ .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|++.+..+ .+..+++|+.|+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 8888888888887 67777888888888888888887 677778888888888888888775443 46666667777777
Q ss_pred CCCCC-CCC-CCCCCCCCCEEEccCCCCCC--Cccccccc------------------ccccCCCCCeeccCCCCCcccc
Q 000712 275 GNPLE-FLP-EILPLLKLRHLSLANIRIVA--DENLRSVN------------------VQIEMENNSYFGASRHKLSAFF 332 (1336)
Q Consensus 275 ~N~L~-~lp-~l~~l~~L~~L~Ls~N~l~~--~~~L~~L~------------------~~l~L~~L~~L~ls~N~L~~~~ 332 (1336)
+|.+. .+| .+..+++|+.|+|++|++++ +..+..+. ....+++|+.|++++|.+.+..
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 76665 333 45566666666666666654 11121100 0112445555555555555433
Q ss_pred ccc--------cccCCCCch-hhHHHHHhh-----hhcCCCcc--cccccccccccCcEEEcCCCcchhHHHhhhhccCc
Q 000712 333 SLI--------FRFSSCHHP-LLASALAKI-----MQDQENRV--VVGKDENAVRQLISMISSDNRHVVEQACSALSSLA 396 (1336)
Q Consensus 333 ~~l--------~~Ls~l~~~-~l~~~L~~l-----L~Ls~N~l--~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp 396 (1336)
+.. ++++.+... ..+..+..+ |++++|.+ .+|..+.++++|+.|+|++|.. ...+|
T Consensus 469 p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l--------~~~~p 540 (968)
T PLN00113 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL--------SGQIP 540 (968)
T ss_pred CcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcc--------cccCC
Confidence 321 233333333 222222222 56666665 4556666666666666666662 22444
Q ss_pred cChhhhcccccccCcchh
Q 000712 397 GDVSVAMLLMKCDIMQPI 414 (1336)
Q Consensus 397 ~~~~~l~~L~~L~i~~~~ 414 (1336)
..+..+.+|+.|++++|.
T Consensus 541 ~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 541 ASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred hhHhCcccCCEEECCCCc
Confidence 455566666666666653
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.6e-23 Score=237.65 Aligned_cols=287 Identities=18% Similarity=0.199 Sum_probs=162.3
Q ss_pred cchhhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCcccc-ccC
Q 000712 116 VEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLT 194 (1336)
Q Consensus 116 ~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~-~l~ 194 (1336)
+....|.++++|+.++|.+|.++. +|.......+|+.|+|.+| ++..+-.+.+..++.|+.||||.|.|+.+|. .+.
T Consensus 93 id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp 170 (873)
T KOG4194|consen 93 IDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFP 170 (873)
T ss_pred CcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCC
Confidence 444566777777777777776655 4544444455666666666 3444444455566666666666666666653 344
Q ss_pred CCCCCcEEEcCCCCCCCCc-cccCCCCCCcEEEccCCcCcccccc-ccCCCCCCEEEeccccccCCc-cccCCCCCCcEE
Q 000712 195 RLPVLEKLYLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPL-LDFRAMAELKIL 271 (1336)
Q Consensus 195 ~L~~L~~L~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~l~~~~-~~l~~L~~L~~L 271 (1336)
.-.+|++|+|++|.|+.+. ..|..+.+|..|.|+.|+|+.+|.- |.+|++|+.|+|..|+|.-.. ..|.+|++|+.|
T Consensus 171 ~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 4456666666666666443 2455556666666666666666553 333666666666666554331 234444444444
Q ss_pred EccCCCCCCCC--------------------------CCCCCCCCCEEEccCCCCCCC--cccccccccccCCCCCeecc
Q 000712 272 RLFGNPLEFLP--------------------------EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFGA 323 (1336)
Q Consensus 272 ~Ls~N~L~~lp--------------------------~l~~l~~L~~L~Ls~N~l~~~--~~L~~L~~~l~L~~L~~L~l 323 (1336)
.|..|.|..+. .+.+++.|+.|+|++|.|..+ .... ...+|+.|++
T Consensus 251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws------ftqkL~~LdL 324 (873)
T KOG4194|consen 251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS------FTQKLKELDL 324 (873)
T ss_pred hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh------hcccceeEec
Confidence 44444444333 334444444444444444432 1111 1456777777
Q ss_pred CCCCCcccccc-c--------cccCCCCchhh----HHHHHhh--hhcCCCcc--cccc---cccccccCcEEEcCCCcc
Q 000712 324 SRHKLSAFFSL-I--------FRFSSCHHPLL----ASALAKI--MQDQENRV--VVGK---DENAVRQLISMISSDNRH 383 (1336)
Q Consensus 324 s~N~L~~~~~~-l--------~~Ls~l~~~~l----~~~L~~l--L~Ls~N~l--~lp~---~l~~L~~L~~L~Ls~N~~ 383 (1336)
++|.|+.+.+. + ++|+.+.+..+ ...+.++ |||+.|.+ .|.+ .++.|++|+.|+|.+|+
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq- 403 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ- 403 (873)
T ss_pred cccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-
Confidence 77777766642 1 33444433322 1223333 77888877 2322 24667888888888888
Q ss_pred hhHHHhhhhccCcc-ChhhhcccccccCcchhHhhhc
Q 000712 384 VVEQACSALSSLAG-DVSVAMLLMKCDIMQPIIAVLK 419 (1336)
Q Consensus 384 l~~~~~~~L~~Lp~-~~~~l~~L~~L~i~~~~l~~L~ 419 (1336)
|+.+|. .+..+..|.+||+-.|-+..+.
T Consensus 404 --------lk~I~krAfsgl~~LE~LdL~~NaiaSIq 432 (873)
T KOG4194|consen 404 --------LKSIPKRAFSGLEALEHLDLGDNAIASIQ 432 (873)
T ss_pred --------eeecchhhhccCcccceecCCCCcceeec
Confidence 777775 5777777888887776444333
No 24
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=99.86 E-value=1e-20 Score=215.79 Aligned_cols=169 Identities=22% Similarity=0.278 Sum_probs=116.3
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhc-cccccCCCCCchh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG-KLVFAEPFPKDNE 621 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~-~~IF~~~~~~~~~ 621 (1336)
|+|+|||+||++++|+|++|++.. +. .||+|+|||+||++|++++.+ .+.++ .+.+.... ...|.
T Consensus 1 Lvl~GGG~rG~~~~Gvl~al~e~~---~~-~fd~i~GtSaGAi~a~~~~~g-~~~~~-~~~~~~~~~~~~~~-------- 66 (266)
T cd07208 1 LVLEGGGMRGAYTAGVLDAFLEAG---IR-PFDLVIGVSAGALNAASYLSG-QRGRA-LRINTKYATDPRYL-------- 66 (266)
T ss_pred CeeccchhhHHHHHHHHHHHHHcC---CC-CCCEEEEECHHHHhHHHHHhC-CcchH-HHHHHHhcCCCCcc--------
Confidence 799999999999999999999872 22 599999999999999999876 34443 33443322 11111
Q ss_pred hHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 622 AATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 622 ~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
.|. .++ ..++.++.+.+.+.+.... ..+.++.......++++++ +++.++++.+|++.
T Consensus 67 --~~~----~~~----------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~i~a--t~~~~g~~~~~~~~ 124 (266)
T cd07208 67 --GLR----SLL----------RTGNLFDLDFLYDELPDGL----DPFDFEAFAASPARFYVVA--TDADTGEAVYFDKP 124 (266)
T ss_pred --CHH----HHh----------cCCCeecHHHHHhhccCcc----CCcCHHHHHhCCCcEEEEE--EECCCCCEEEEeCc
Confidence 111 111 1244566666665543111 1122222112222444444 48999999999976
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCch
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANNP 781 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNNP 781 (1336)
+. +..+++|++||||+|++|+|+.+++..|+|||+.+|+|
T Consensus 125 ~~----------------------------------------~~~l~~av~AS~aiP~~f~pv~i~g~~yvDGGv~~~~P 164 (266)
T cd07208 125 DI----------------------------------------LDDLLDALRASSALPGLFPPVRIDGEPYVDGGLSDSIP 164 (266)
T ss_pred Cc----------------------------------------chHHHHHHHHHhcchhhcCCEEECCEEEEcCccCcchh
Confidence 42 23599999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000712 782 TIFAIR 787 (1336)
Q Consensus 782 t~~Ai~ 787 (1336)
+..|+.
T Consensus 165 ~~~a~~ 170 (266)
T cd07208 165 VDKAIE 170 (266)
T ss_pred HHHHHH
Confidence 998654
No 25
>PRK10279 hypothetical protein; Provisional
Probab=99.86 E-value=5.4e-20 Score=210.84 Aligned_cols=177 Identities=20% Similarity=0.313 Sum_probs=128.7
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCch
Q 000712 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDN 620 (1336)
Q Consensus 541 rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~ 620 (1336)
.-|+|.|||+||++|+|||++||+. |. .||+|+|||+||++|++++.+. .+++.+++..+. |..
T Consensus 6 igLvL~GGGarG~ahiGVL~aL~E~-gi----~~d~i~GtS~GAlvga~yA~g~--~~~l~~~~~~~~---~~~------ 69 (300)
T PRK10279 6 IGLALGSGAARGWSHIGVINALKKV-GI----EIDIVAGCSIGSLVGAAYACDR--LSALEDWVTSFS---YWD------ 69 (300)
T ss_pred EEEEEcCcHHHHHHHHHHHHHHHHc-CC----CcCEEEEEcHHHHHHHHHHcCC--hHHHHHHHhccc---hhh------
Confidence 4699999999999999999999995 33 3799999999999999999773 455555443321 000
Q ss_pred hhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeec
Q 000712 621 EAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRN 700 (1336)
Q Consensus 621 ~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrn 700 (1336)
+. .++. +. +...+.++.+.+.+.+++.+. ...+++... .+.+++| |+.++++++|+.
T Consensus 70 ----~~----~~~d-----~~-~~~~gl~~~~~~~~~l~~~~~----~~~~e~l~~---~~~ivAt--dl~tg~~v~~~~ 126 (300)
T PRK10279 70 ----VL----RLMD-----LS-WQRGGLLRGERVFNQYREIMP----ETEIENCSR---RFGAVAT--NLSTGRELWFTE 126 (300)
T ss_pred ----hh----hhhc-----cC-CCcCcccCcHHHHHHHHHHcC----hhhHHhCCC---CEEEEEE--ECCCCCEEEecC
Confidence 00 0000 00 112456788899999988873 344544322 3445544 899999999974
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccCCc
Q 000712 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVANN 780 (1336)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~aNN 780 (1336)
. .+++|+|||||+|++|+|+.+++..|+|||+.+|.
T Consensus 127 g--------------------------------------------~l~~avrAS~aiP~vf~Pv~~~g~~~vDGGv~~~~ 162 (300)
T PRK10279 127 G--------------------------------------------DLHLAIRASCSMPGLMAPVAHNGYWLVDGAVVNPV 162 (300)
T ss_pred C--------------------------------------------CHHHHHHHhcccccCCCCEEECCEEEEECccCccc
Confidence 3 38899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEeCC
Q 000712 781 PTIFAIREAQLLWPDTRIDCLVSIGC 806 (1336)
Q Consensus 781 Pt~~Ai~EA~~l~p~~~i~~VVSIGT 806 (1336)
|+..| +.+. .+..++|.+..
T Consensus 163 Pv~~a----~~~G--ad~viaV~v~~ 182 (300)
T PRK10279 163 PVSLT----RALG--ADIVIAVDLQH 182 (300)
T ss_pred cHHHH----HHcC--CCEEEEEECCC
Confidence 99984 4443 34446777765
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=7.7e-21 Score=239.67 Aligned_cols=340 Identities=20% Similarity=0.137 Sum_probs=226.8
Q ss_pred CCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEc
Q 000712 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1336)
Q Consensus 125 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 204 (1336)
++|+.|++++|+|+. +|. .+++|++|+|++|++. .++. ..++|+.|+|++|.|+.+|.. +++|+.|+|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhhhc---hhhcCEEEC
Confidence 478999999999886 553 2578999999999754 3332 246889999999999988863 357889999
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCCCC
Q 000712 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1336)
Q Consensus 205 s~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~l 284 (1336)
++|+|+.+|.. +++|+.|+|++|+|+.+|... .+|+.|++++|+|++++. + ..+|+.|+|++|+|+.+|.+
T Consensus 290 s~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~-l--p~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 290 FGNQLTSLPVL---PPGLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPT-L--PSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred cCCcccccccc---ccccceeECCCCccccCCCCc---ccccccccccCccccccc-c--ccccceEecCCCccCCCCCC
Confidence 99999988863 478999999999999887532 468889999999987653 2 25899999999999988864
Q ss_pred CCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcc-cc
Q 000712 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (1336)
Q Consensus 285 ~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l-~l 363 (1336)
..+|+.|++++|+|+.++.+. .+|+.|++++|.|+.++.... .+ +.|++++|.+ .+
T Consensus 361 --p~~L~~L~Ls~N~L~~LP~l~--------~~L~~LdLs~N~Lt~LP~l~s---~L----------~~LdLS~N~LssI 417 (788)
T PRK15387 361 --PSELYKLWAYNNRLTSLPALP--------SGLKELIVSGNRLTSLPVLPS---EL----------KELMVSGNRLTSL 417 (788)
T ss_pred --CcccceehhhccccccCcccc--------cccceEEecCCcccCCCCccc---CC----------CEEEccCCcCCCC
Confidence 357889999999998765432 468889999998887553211 00 1155666666 55
Q ss_pred cccccccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccc-h
Q 000712 364 GKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASD-T 442 (1336)
Q Consensus 364 p~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~-~ 442 (1336)
|.. ..+|+.|+|++|+ |+.||..+..+..|..+++.+|.++ ....+.++.+.+..-... .
T Consensus 418 P~l---~~~L~~L~Ls~Nq---------Lt~LP~sl~~L~~L~~LdLs~N~Ls-------~~~~~~L~~l~s~~~~~gp~ 478 (788)
T PRK15387 418 PML---PSGLLSLSVYRNQ---------LTRLPESLIHLSSETTVNLEGNPLS-------ERTLQALREITSAPGYSGPI 478 (788)
T ss_pred Ccc---hhhhhhhhhccCc---------ccccChHHhhccCCCeEECCCCCCC-------chHHHHHHHHhcCccccCcc
Confidence 542 2345566666666 5666666666666666666665321 122222222222211111 1
Q ss_pred HHHhhh---chHHHHHHHHHHhcCChhhhh--HHHhhhcccccccccchhhhchhhHHHHHHHhcc-CCChhhHHHHHHH
Q 000712 443 VAQKML---TKDVLKSLKLLCAHKNPEVQR--FALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARA 516 (1336)
Q Consensus 443 i~~~l~---~~~lL~~L~~l~~~~~~~Vq~--~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~-s~~~~v~~~a~~~ 516 (1336)
+...+. ....++.|......|-+..+. ......|+ ++..+..+..+ ..+| +.|.+... ...+++++.+..+
T Consensus 479 i~~Dm~~~~~~~~~r~L~~a~a~WL~~~~~~~~~~~~~W~-~~~~E~~s~~F-~~fL-~~L~~t~~~~~~~~~~~~V~~~ 555 (788)
T PRK15387 479 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH-MFGQEDNADAF-SLFL-DRLSETENFIKDAGFKAQISSW 555 (788)
T ss_pred eehhhcccccccccchhhHHhhhhcCcccccchhhHHHHH-hhccCcchHHH-HHHH-HHHhccccccccHHHHHHHHHH
Confidence 111111 112245566666666655443 23355666 57777777666 3467 44444444 4558899999999
Q ss_pred HHHhccchhhhHhh
Q 000712 517 LAILGENESLRRAI 530 (1336)
Q Consensus 517 La~Lgen~~lRr~i 530 (1336)
|..+..++.+|+.+
T Consensus 556 l~~~~~~~~LR~~~ 569 (788)
T PRK15387 556 LAQLAEDEALRANT 569 (788)
T ss_pred HHHHhcCHHHHHHH
Confidence 99999999999854
No 27
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=99.83 E-value=6.4e-20 Score=219.29 Aligned_cols=181 Identities=20% Similarity=0.372 Sum_probs=130.8
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhcc---ccccCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGK---LVFAEP 615 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~---~IF~~~ 615 (1336)
|...|+|+|||+||++|+|||++|++. | + .+|+|+|||+|||+|++++.. +.+|+.+++..+.. .+|...
T Consensus 72 GrtALvLsGGG~rG~~hiGVLkaL~E~-g--l--~p~vIsGTSaGAivAal~as~--~~eel~~~l~~~~~~~~~~f~~~ 144 (421)
T cd07230 72 GRTALLLSGGGTFGMFHIGVLKALFEA-N--L--LPRIISGSSAGSIVAAILCTH--TDEEIPELLEEFPYGDFNVFEDP 144 (421)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHHc-C--C--CCCEEEEECHHHHHHHHHHcC--CHHHHHHHHHhcchHHHHHHhcc
Confidence 467899999999999999999999775 2 2 379999999999999999874 78999998877532 244432
Q ss_pred CCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCC-Cc
Q 000712 616 FPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP-AQ 694 (1336)
Q Consensus 616 ~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~-~~ 694 (1336)
... ..|...+.+++ ..++.|+.+.+++.+++.+ ++.++.++.....+.+.++++ +... ..
T Consensus 145 ~~~----~~~~~~~~~l~----------~~g~~~d~~~l~~~l~~~l----gd~tF~Eay~rt~r~L~I~vt-~~~~~~~ 205 (421)
T cd07230 145 DQE----ENVLQKLSRFL----------KYGSWFDISHLTRVMRGFL----GDLTFQEAYNRTRRILNITVS-PASIYEL 205 (421)
T ss_pred ccc----chHHHHHHHHH----------hcCCCcCHHHHHHHHHHHh----CCCCHHHHHHhhCCeEEEEEE-eccccCC
Confidence 110 11222222222 2367899999999999998 677888877666554433322 2222 34
Q ss_pred EEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee--------
Q 000712 695 PFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD-------- 766 (1336)
Q Consensus 695 p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i-------- 766 (1336)
|.++...+. .++.+|+|++||||+|++|+|+++
T Consensus 206 p~llny~t~---------------------------------------p~v~I~~AV~AS~AlP~vf~pv~l~~Kd~~~g 246 (421)
T cd07230 206 PRLLNYITA---------------------------------------PNVLIWSAVCASCSVPGVFPSSPLYEKDPKTG 246 (421)
T ss_pred CeeeeeccC---------------------------------------CCcHHHHHHHHhcCchhhcCCeEEEeecCCCC
Confidence 554432221 156799999999999999999986
Q ss_pred -------CCcccccCcccCCchHHH
Q 000712 767 -------DVFRWQDGAIVANNPTIF 784 (1336)
Q Consensus 767 -------~~~~~vDGGl~aNNPt~~ 784 (1336)
++..|+|||+..|.|+..
T Consensus 247 ~i~p~~~~g~~~vDGgv~~~iPi~~ 271 (421)
T cd07230 247 EIVPWNPSSVKWIDGSVDNDLPMTR 271 (421)
T ss_pred ceecccCCCCceeCCCccccChHHH
Confidence 267899999999999988
No 28
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=9e-23 Score=228.34 Aligned_cols=286 Identities=22% Similarity=0.240 Sum_probs=218.0
Q ss_pred hhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCC
Q 000712 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L 199 (1336)
.+..+..|..|+..+|+++. .|..+.++.+|..|++.+|+ ....++..+ +++.|+.||...|-++.+|+.++.+.+|
T Consensus 132 ~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~-l~~l~~~~i-~m~~L~~ld~~~N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNK-LKALPENHI-AMKRLKHLDCNSNLLETLPPELGGLESL 208 (565)
T ss_pred hHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccc-hhhCCHHHH-HHHHHHhcccchhhhhcCChhhcchhhh
Confidence 45555666666666676655 56666667777777777775 344455444 4778888888888888888888888888
Q ss_pred cEEEcCCCCCCCCccccCCCCCCcEEEccCCcCcccccccc-CCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCC
Q 000712 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-ECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPL 278 (1336)
Q Consensus 200 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L 278 (1336)
..|+|..|+|..+| .|..+..|.+|+++.|+|..+|.... ++.+|..|||.+|++++.|..++.+++|+.||+++|.|
T Consensus 209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred HHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc
Confidence 88888888888888 67888888888888888888887764 78889999999999988888888888899999999999
Q ss_pred CCCC-CCCCCCCCCEEEccCCCCCCC-------------c---------ccc-------------cc--cccccCCCCCe
Q 000712 279 EFLP-EILPLLKLRHLSLANIRIVAD-------------E---------NLR-------------SV--NVQIEMENNSY 320 (1336)
Q Consensus 279 ~~lp-~l~~l~~L~~L~Ls~N~l~~~-------------~---------~L~-------------~L--~~~l~L~~L~~ 320 (1336)
+.+| +++++ .|+.|-+.+|.+..+ . .+. .. ...-.+.+.+.
T Consensus 288 s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tki 366 (565)
T KOG0472|consen 288 SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKI 366 (565)
T ss_pred ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhh
Confidence 8777 78888 888898988876521 0 000 00 00112345678
Q ss_pred eccCCCCCccccccc-----------cccCCCCchhhHHHHHhh------hhcCCCcc-cccccccccccCcEEEcCCCc
Q 000712 321 FGASRHKLSAFFSLI-----------FRFSSCHHPLLASALAKI------MQDQENRV-VVGKDENAVRQLISMISSDNR 382 (1336)
Q Consensus 321 L~ls~N~L~~~~~~l-----------~~Ls~l~~~~l~~~L~~l------L~Ls~N~l-~lp~~l~~L~~L~~L~Ls~N~ 382 (1336)
|+++.-+++..|..+ .+++.++...+|..+..+ +.+++|.+ .+|..++.+++|..|+|++|.
T Consensus 367 L~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~ 446 (565)
T KOG0472|consen 367 LDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL 446 (565)
T ss_pred hcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch
Confidence 888888888877543 457777777777766655 88899999 777888999999999999999
Q ss_pred chhHHHhhhhccCccChhhhcccccccCcchhHhhhc
Q 000712 383 HVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLK 419 (1336)
Q Consensus 383 ~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~ 419 (1336)
|..||..+..+..|+.+|++.|-..+++
T Consensus 447 ---------Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP 474 (565)
T KOG0472|consen 447 ---------LNDLPEEMGSLVRLQTLNLSFNRFRMLP 474 (565)
T ss_pred ---------hhhcchhhhhhhhhheecccccccccch
Confidence 9999999999999999999998554444
No 29
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=99.82 E-value=6.3e-20 Score=195.45 Aligned_cols=158 Identities=25% Similarity=0.364 Sum_probs=111.6
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccc---cccCCCCCc
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKL---VFAEPFPKD 619 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~---IF~~~~~~~ 619 (1336)
|+|+|||+||++|+|||++|++. |.+ ||+|+|||+|||+|++++.+ ++.+++..++.++... .|...
T Consensus 1 Lvl~GGG~rG~~~~Gvl~aL~e~-gi~----~d~v~GtSaGAi~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~~~~---- 70 (172)
T cd07198 1 LVLSGGGALGIYHVGVAKALRER-GPL----IDIIAGTSAGAIVAALLASG-RDLEEALLLLLRLSREVRLRFDGA---- 70 (172)
T ss_pred CEECCcHHHHHHHHHHHHHHHHc-CCC----CCEEEEECHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhccCC----
Confidence 78999999999999999999986 322 89999999999999999876 7888887776432211 11100
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEee
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFr 699 (1336)
+.....+....++..+++.. ...+. ....++++++| ++.++++++|.
T Consensus 71 -----------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~i~at--~l~tg~~~~~~ 117 (172)
T cd07198 71 -----------------------FPPTGRLLGILRQPLLSALP-----DDAHE---DASGKLFISLT--RLTDGENVLVS 117 (172)
T ss_pred -----------------------cCcccchhHHHHHHHHHhcc-----HhHHH---HCCCCEEEEEE--ECCCCCEEEEe
Confidence 00111222222233333222 11111 22235566655 88999999987
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee--CCcccccCccc
Q 000712 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAIV 777 (1336)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i--~~~~~vDGGl~ 777 (1336)
. + . +..+++|++||||+|++|+|+.+ ++..|+|||+.
T Consensus 118 ~-~-~---------------------------------------~~~l~~av~AS~aiP~~f~p~~~~~~g~~~vDGGv~ 156 (172)
T cd07198 118 D-T-S---------------------------------------KGELWSAVRASSSIPGYFGPVPLSFRGRRYGDGGLS 156 (172)
T ss_pred C-C-C---------------------------------------cchHHHHHHHHcchhhhcCceeecCCCeEEEeCCcc
Confidence 5 1 1 23599999999999999999999 99999999999
Q ss_pred CCchHHH
Q 000712 778 ANNPTIF 784 (1336)
Q Consensus 778 aNNPt~~ 784 (1336)
.|+|+..
T Consensus 157 ~n~Pv~~ 163 (172)
T cd07198 157 NNLPVAE 163 (172)
T ss_pred cCCCCcc
Confidence 9999976
No 30
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.81 E-value=4e-19 Score=211.56 Aligned_cols=184 Identities=19% Similarity=0.285 Sum_probs=133.5
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~ 618 (1336)
|...|+|+|||+||++++|||++|++. | -.||+|+|||+|||+|++++.. +.+|+.+++.......|....
T Consensus 66 grtALvLsGGG~rG~~h~GVlkaL~e~-g----llp~iI~GtSAGAivaalla~~--t~~el~~~~~~~~~~~~~~~~-- 136 (407)
T cd07232 66 GRTALCLSGGAAFAYYHFGVVKALLDA-D----LLPNVISGTSGGSLVAALLCTR--TDEELKQLLVPELARKITACE-- 136 (407)
T ss_pred CCEEEEECCcHHHHHHHHHHHHHHHhC-C----CCCCEEEEECHHHHHHHHHHcC--CHHHHHHHHhhhhhhhhhhcc--
Confidence 356899999999999999999999997 2 3489999999999999999974 678888777653222221100
Q ss_pred chhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHH-HHHHhcCCCcchhhhhhhcCCCeEE-EEEEeeccCCCcEE
Q 000712 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERL-LKEMCADEDGDLLIESSVKNIPKVF-TVSTLVNVMPAQPF 696 (1336)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~-Lk~~~~~~~g~~~~~~~~~~~~kv~-vvsT~~d~~~~~p~ 696 (1336)
. .|...+.+++ ..+..++.+.+++. ++..+ |+.+++++....++.+ ++++ +.+++++.
T Consensus 137 ~----~~~~~~~~~l----------~~G~~~d~~~l~~~~~~~~~----gd~TFeEa~~~tgr~l~I~vt--~~d~~~~~ 196 (407)
T cd07232 137 P----PWLVWIPRWL----------KTGARFDSVEWARTCCWFTR----GSMTFEEAYERTGRILNISVV--PADPHSPT 196 (407)
T ss_pred c----hHHHHHHHHH----------hcCCCCCHHHHHHHHHHHhc----CCCCHHHHHHhcCCEEEEEEE--ECCCCCce
Confidence 0 1111121211 23567898889888 77777 6777888776555433 4344 44567777
Q ss_pred EeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee----------
Q 000712 697 IFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD---------- 766 (1336)
Q Consensus 697 lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i---------- 766 (1336)
.|.||... .++.+|+|++||||+|++|+|+++
T Consensus 197 ~lln~~ts--------------------------------------p~v~I~sAV~AS~svPgvf~pv~l~~k~~~g~~~ 238 (407)
T cd07232 197 ILLNYLTS--------------------------------------PNCTIWSAVLASAAVPGILNPVVLMMKDPDGTLI 238 (407)
T ss_pred EEeccCCC--------------------------------------CccHHHHHHhcccCccccccCeEEEeecCCCCcc
Confidence 77777521 156799999999999999999987
Q ss_pred ----CCcccccCcccCCchHHHHHHHHHHhC
Q 000712 767 ----DVFRWQDGAIVANNPTIFAIREAQLLW 793 (1336)
Q Consensus 767 ----~~~~~vDGGl~aNNPt~~Ai~EA~~l~ 793 (1336)
++..|+|||+..|.|+.. +.++|
T Consensus 239 ~~~~~g~~~~DGgv~~diP~~~----l~elf 265 (407)
T cd07232 239 PPFSFGSKWKDGSLRTDIPLKA----LNTLF 265 (407)
T ss_pred cccCCCCceecCCcCcccHHHH----HHHHc
Confidence 667899999999999988 44555
No 31
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.2e-22 Score=227.27 Aligned_cols=268 Identities=21% Similarity=0.196 Sum_probs=223.8
Q ss_pred hhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCC
Q 000712 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L 199 (1336)
..+.-..|..|.+++|.+.. +.+.+.+|..|.+|++++|++ ...|+ .++.+..++.|+.++|+++.+|+.+..+.+|
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l-~~lp~-aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKL-SQLPA-AIGELEALKSLNVSHNKLSELPEQIGSLISL 116 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchh-hhCCH-HHHHHHHHHHhhcccchHhhccHHHhhhhhh
Confidence 45566678889999998876 445678899999999999963 33444 4468889999999999999999999999999
Q ss_pred cEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCC
Q 000712 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLE 279 (1336)
Q Consensus 200 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~ 279 (1336)
..|++++|.+..+|++++.+..|..|+..+|+++++|.++.++.+|..|++.+|++..+++..-+++.|++||..+|-++
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998887666999999999999998
Q ss_pred CCC-CCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCcccccccc-ccCCCCchhhHHHHHhhhhcC
Q 000712 280 FLP-EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIF-RFSSCHHPLLASALAKIMQDQ 357 (1336)
Q Consensus 280 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~-~Ls~l~~~~l~~~L~~lL~Ls 357 (1336)
.+| +++.+.+|..|+|..|+|..+|+++. ++.+..+.++.|+|..++.... +++++.. |||+
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~~lPef~g------cs~L~Elh~g~N~i~~lpae~~~~L~~l~v----------LDLR 260 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIRFLPEFPG------CSLLKELHVGENQIEMLPAEHLKHLNSLLV----------LDLR 260 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccccCCCCCc------cHHHHHHHhcccHHHhhHHHHhccccccee----------eecc
Confidence 666 78999999999999999999888876 6778888888888887664332 4443322 7888
Q ss_pred CCcc-cccccccccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHh
Q 000712 358 ENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIA 416 (1336)
Q Consensus 358 ~N~l-~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~ 416 (1336)
.|.+ .+|+++..|++|..||+|+|. ++.||..++++ .|+.|-+.+|-+.
T Consensus 261 dNklke~Pde~clLrsL~rLDlSNN~---------is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 261 DNKLKEVPDEICLLRSLERLDLSNND---------ISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred ccccccCchHHHHhhhhhhhcccCCc---------cccCCcccccc-eeeehhhcCCchH
Confidence 8888 888888888889999999998 88888888888 7888877776443
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.9e-19 Score=226.95 Aligned_cols=332 Identities=20% Similarity=0.202 Sum_probs=223.1
Q ss_pred CCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEc
Q 000712 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYL 204 (1336)
Q Consensus 125 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 204 (1336)
++|+.|+|++|+|+. +|..+. ++|+.|+|++|++. .++... ..+|+.|+|++|+|+.+|..+. .+|++|+|
T Consensus 199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEMELSINRITELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhh---hccccEEECcCCccCcCChhHh--CCCCEEEC
Confidence 578999999999886 565543 58999999999744 444433 2478999999999998887664 57999999
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCCCC
Q 000712 205 DNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEI 284 (1336)
Q Consensus 205 s~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~l 284 (1336)
++|+|+.+|..+. ++|+.|+|++|+|+.+|..+. .+|+.|+|++|+++.++..+ .++|+.|++++|.|+.+|.-
T Consensus 270 s~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 270 FHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTSLPAS 343 (754)
T ss_pred cCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCccccCChh
Confidence 9999998887664 589999999999998887654 47899999999998776544 36899999999999877742
Q ss_pred CCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcc-cc
Q 000712 285 LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-VV 363 (1336)
Q Consensus 285 ~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l-~l 363 (1336)
. .++|+.|+|++|+|+.++.-. .++|+.|++++|.|+.+++.+ +..+ +.|++++|.+ .+
T Consensus 344 l-~~sL~~L~Ls~N~L~~LP~~l-------p~~L~~LdLs~N~Lt~LP~~l-----------~~sL-~~LdLs~N~L~~L 403 (754)
T PRK15370 344 L-PPELQVLDVSKNQITVLPETL-------PPTITTLDVSRNALTNLPENL-----------PAAL-QIMQASRNNLVRL 403 (754)
T ss_pred h-cCcccEEECCCCCCCcCChhh-------cCCcCEEECCCCcCCCCCHhH-----------HHHH-HHHhhccCCcccC
Confidence 1 368999999999988654211 247889999999888655432 1222 2378888888 66
Q ss_pred cccc----cccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccc
Q 000712 364 GKDE----NAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFA 439 (1336)
Q Consensus 364 p~~l----~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~ 439 (1336)
|..+ ..++++..|+|.+|+. .. ..+.+|+.+..+.... .+. ....+. .+.
T Consensus 404 P~sl~~~~~~~~~l~~L~L~~Npl---------s~-----~tl~~L~~Ll~s~~~~------gp~-i~~~~~-----~~~ 457 (754)
T PRK15370 404 PESLPHFRGEGPQPTRIIVEYNPF---------SE-----RTIQNMQRLMSSVGYQ------GPR-VLFAMG-----DFS 457 (754)
T ss_pred chhHHHHhhcCCCccEEEeeCCCc---------cH-----HHHHHHHHhhhccccc------CCc-cccccc-----ccc
Confidence 6655 3457888999999983 21 1122222221110000 000 000000 000
Q ss_pred cchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHH
Q 000712 440 SDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAI 519 (1336)
Q Consensus 440 ~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~ 519 (1336)
...+.+++......|-+..+.... +.|.- |..+..+..+ ..+| +.|.+....+++.+++.+..+|..
T Consensus 458 ---------~l~~~~~l~~a~~~Wl~~~~~~~~-~~W~~-l~~e~~s~~f-~~~l-~rL~~t~~~~~~~f~~rV~~~L~~ 524 (754)
T PRK15370 458 ---------IVRVTRPLHQAVQGWLTNLEEEDV-NQWRA-FETEVNAAAF-SMFL-DRLSDTQNTRHPDFKEQVSAWLMR 524 (754)
T ss_pred ---------cccccchHHHHHhccCCccchhHH-HHHHH-HhhccCcHHH-HHHH-HHHHhhhhhccHHHHHHHHHHHHH
Confidence 011223344445566666655543 33544 6666666655 3356 566666666778999999999999
Q ss_pred hccchhhhHhh
Q 000712 520 LGENESLRRAI 530 (1336)
Q Consensus 520 Lgen~~lRr~i 530 (1336)
+..++.+|+.+
T Consensus 525 ~a~~~~LR~~l 535 (754)
T PRK15370 525 LAEDSALRETA 535 (754)
T ss_pred HhcCHHHHHHH
Confidence 99999999854
No 33
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=99.80 E-value=1.8e-20 Score=201.34 Aligned_cols=200 Identities=24% Similarity=0.300 Sum_probs=103.7
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|+|+|||+||++++++|++| +.+..+.||+|+|||+||++|++++.+ .+.+++.+.+..+....|.....
T Consensus 1 LvlsGGG~rg~~~~G~l~~L----~~~~~~~~d~i~GtS~Gal~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----- 70 (204)
T PF01734_consen 1 LVLSGGGSRGAYQAGVLKAL----GQGLGERFDVISGTSAGALNAALLALG-YDPDESLDQFYDLWRNLFFSSNL----- 70 (204)
T ss_dssp EEE---CCGCCCCHHHHHHH----CCTGCCT-SEEEEECCHHHHHHHHHTC--TCCCCCCHHCCHHHHHHHCCCT-----
T ss_pred CEEcCcHHHHHHHHHHHHHH----hhhhCCCccEEEEcChhhhhHHHHHhC-CCHHHHHHHHHHHHHhhcccccc-----
Confidence 89999999999999999999 445678899999999999999999876 33333333332222222222110
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEE----eeccCCCcEEEe
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVST----LVNVMPAQPFIF 698 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT----~~d~~~~~p~lF 698 (1336)
.+. ................+..|+...+++.+++.+. +...+.......+...... ............
T Consensus 71 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (204)
T PF01734_consen 71 -MKR---RRPRKAFRRLRGLFGGSGLFDSEPLRDWLRRVLG----DLTLEEFSARLPRAIGAADDFTTRSRSIFQSPSSP 142 (204)
T ss_dssp -H---------HHT-------SSS-SS--HHHHHHHHHHHC----CHCHHHHCTCECCC-EE--------------EEEC
T ss_pred -ccc---cccccccccccccccCccchhHHHHHHHHHHhcc----ccCHHHhhhcccccccccccccccccccccccccc
Confidence 000 0000011112233445678899999999999884 3333333322221110000 000000001111
Q ss_pred ecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCcccC
Q 000712 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIVA 778 (1336)
Q Consensus 699 rny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~a 778 (1336)
....... ............+..+|+|++||+|+|+||+|+.+++..|+|||+..
T Consensus 143 ~~~~~~~--------------------------~~~~~~~~~~~~~~~l~~a~~AS~a~P~~~~p~~~~g~~~~DGG~~~ 196 (204)
T PF01734_consen 143 FRASSNN--------------------------FNESRSRYDFDPDVPLWDAVRASSAIPGIFPPVKIDGEYYIDGGILD 196 (204)
T ss_dssp CCCECCE--------------------------EECCCCCTTCCCTSBHHHHHHHCCHSTTTSTTEEETS-EEEEGGGCS
T ss_pred ccccccc--------------------------cccccccccCCCcchHHHhhChhccccccCCCEEECCEEEEecceee
Confidence 0000000 00001111223477899999999999999999999999999999999
Q ss_pred CchHHHHH
Q 000712 779 NNPTIFAI 786 (1336)
Q Consensus 779 NNPt~~Ai 786 (1336)
|||+..|+
T Consensus 197 n~P~~~a~ 204 (204)
T PF01734_consen 197 NNPIEAAL 204 (204)
T ss_dssp ---GGGC-
T ss_pred ccccccCC
Confidence 99998764
No 34
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.78 E-value=1.1e-18 Score=195.57 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=122.1
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|+|.|||+||++|+||+++|++. +.++...||.|+|||+||++|++++.+ ++.+++.+.+.++.+..-.+.
T Consensus 3 Lsl~GGG~rG~yh~GVl~aL~e~-~~~l~~~~~~i~GtSAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~------- 73 (252)
T cd07221 3 LSFAGCGFLGFYHVGVTRCLSER-APHLLRDARMFFGASAGALHCVTFLSG-LPLDQILQILMDLVRSARSRN------- 73 (252)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHh-CcchhccCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHhccccc-------
Confidence 89999999999999999999997 445556799999999999999999876 788999988877554211110
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecCC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny~ 702 (1336)
+. .++........+++.+++++.. ...+.. ..++.+++| ++.++++++|++++
T Consensus 74 ----------~g--------~~~~~~~~~~~l~~~l~~~lp~-----~~~~~~--~~~l~I~~T--~l~tg~~v~~~~f~ 126 (252)
T cd07221 74 ----------IG--------ILHPSFNLSKHLRDGLQRHLPD-----NVHQLI--SGKMCISLT--RVSDGENVLVSDFH 126 (252)
T ss_pred ----------cc--------ccCcccCHHHHHHHHHHHHCCc-----CHHHhc--CCCEEEEEE--ECCCCCEEEEecCC
Confidence 00 0111112345666777776632 112211 234555555 78899999999875
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCC--CcceeeCCcccccCcccCCc
Q 000712 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (1336)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~y--F~p~~i~~~~~vDGGl~aNN 780 (1336)
. +..+++|++||||+|+| |.|+.++|..|+|||+.+|.
T Consensus 127 s----------------------------------------~~~l~~av~AS~siP~~~g~~P~~~~G~~yvDGGv~dnl 166 (252)
T cd07221 127 S----------------------------------------KDEVVDALVCSCFIPFFSGLIPPSFRGVRYVDGGVSDNV 166 (252)
T ss_pred C----------------------------------------chHHHHHHHHHccCccccCCCCeEECCEEEEeCCcccCC
Confidence 2 22489999999999999 56788999999999999999
Q ss_pred hHHH
Q 000712 781 PTIF 784 (1336)
Q Consensus 781 Pt~~ 784 (1336)
|+..
T Consensus 167 Pv~~ 170 (252)
T cd07221 167 PFFD 170 (252)
T ss_pred CccC
Confidence 9863
No 35
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.78 E-value=2.2e-18 Score=200.27 Aligned_cols=187 Identities=24% Similarity=0.293 Sum_probs=135.7
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
...|+|.|||+||++|+|||++|++. | -.||+|+|||+||++|++++.+ ++.++..+.-..+........
T Consensus 11 ~i~LvL~GGgArG~~hiGVl~aL~e~-g----i~~~~iaGtS~GAiva~l~A~g-~~~~~~~~~~~~l~~~~~~~~---- 80 (306)
T COG1752 11 RIGLVLGGGGARGAAHIGVLKALEEA-G----IPIDVIAGTSAGAIVAALYAAG-MDEDELELAAQRLTARWDNAR---- 80 (306)
T ss_pred eEEEEecCcHHHHHHHHHHHHHHHHc-C----CCccEEEecCHHHHHHHHHHcC-CChhHHHHHHHHHHhhhcccc----
Confidence 47899999999999999999999997 2 2379999999999999999976 788887766655443221100
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcch--hhhhhhcCCCeEEEEEEeeccCCCcEEE
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDL--LIESSVKNIPKVFTVSTLVNVMPAQPFI 697 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~--~~~~~~~~~~kv~vvsT~~d~~~~~p~l 697 (1336)
.+....+..+.. ....+.+....+.+.+++.++ +. .+++..++. ++|++ +|+.+++.++
T Consensus 81 ----~~~~~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~--~~v~a--td~~~g~~~~ 141 (306)
T COG1752 81 ----DLLRLLDLTLPG-------GRPLGLLRGEKLRNLLRELLG----DLLFDFEDLPIPL--LYVVA--TDLLTGREVV 141 (306)
T ss_pred ----chhhccchhhhc-------cCccceecHHHHHHHHHHHhc----ccccCHHHcCCCc--EEEEe--eEcCCCCEEE
Confidence 000000000100 002367788999999999994 44 566554432 34443 5899999999
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCccc
Q 000712 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGAIV 777 (1336)
Q Consensus 698 Frny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGGl~ 777 (1336)
|+.. .+|+|+|||+|.|++|+|+.+++..|+|||+.
T Consensus 142 ~~~g--------------------------------------------~~~~av~AS~siP~vF~Pv~i~~~~~vDGg~~ 177 (306)
T COG1752 142 FSEG--------------------------------------------SLAEAVRASCSIPGVFPPVEIDGRLLVDGGVL 177 (306)
T ss_pred ecCC--------------------------------------------cHHHHHHHhcccCccCCCEEECCEEEEecCcc
Confidence 8832 29999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCCCCCCCEEEEeC
Q 000712 778 ANNPTIFAIREAQLLWPDTRIDCLVSIG 805 (1336)
Q Consensus 778 aNNPt~~Ai~EA~~l~p~~~i~~VVSIG 805 (1336)
+|-|+.. ++.+.. ++.++|.++
T Consensus 178 ~n~Pv~~----~~~~~~--~~vi~v~v~ 199 (306)
T COG1752 178 NNVPVSL----LRELGA--DIVIAVDVN 199 (306)
T ss_pred CCccHHH----HHHcCC--CeEEEEecc
Confidence 9999988 444443 443566666
No 36
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.78 E-value=1e-18 Score=196.22 Aligned_cols=167 Identities=17% Similarity=0.305 Sum_probs=119.0
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|+|.|||+||++|+|||++|++. |.++.+.||.|+|||+||++|++++.....++++.+.+..+.+.+....
T Consensus 2 L~l~GGG~rG~yhiGVl~~L~e~-g~~l~~~~~~i~GtSaGAl~aa~~a~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (246)
T cd07222 2 LSFAACGFLGIYHLGAAKALLRH-GKKLLKRVKRFAGASAGSLVAAVLLTAPEKIEECKEFTYKFAEEVRKQR------- 73 (246)
T ss_pred eeEcccHHHHHHHHHHHHHHHHc-CchhhccCCEEEEECHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcc-------
Confidence 89999999999999999999996 5555667999999999999999998543346666555544333222110
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecCC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny~ 702 (1336)
+. .+..+....+.+++.+++++.. ...+.. + .++.+++| ++.++++++|+.++
T Consensus 74 ----------~~--------~~~~~~~~~~~l~~~l~~~lp~-----~~~~~~-~-~~l~I~aT--dl~tg~~v~~~~f~ 126 (246)
T cd07222 74 ----------FG--------AMTPGYDFMARLRKGIESILPT-----DAHELA-N-DRLHVSIT--NLKTRKNYLVSNFT 126 (246)
T ss_pred ----------cC--------CCCCcchHHHHHHHHHHHHCCH-----HHHhcC-C-CcEEEEEE--ECCCCCeEEEeccC
Confidence 00 0011122245567777777632 122211 2 34555555 88999999999765
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCC--CcceeeCCcccccCcccCCc
Q 000712 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVANN 780 (1336)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~y--F~p~~i~~~~~vDGGl~aNN 780 (1336)
.. ..+.+|++||||+|+| |+|+.+++..|+|||+.+|.
T Consensus 127 s~----------------------------------------~~L~~av~AS~aiP~~~g~~pv~~~G~~~vDGGv~~~~ 166 (246)
T cd07222 127 SR----------------------------------------EDLIKVLLASCYVPVYAGLKPVEYKGQKWIDGGFTNSL 166 (246)
T ss_pred Cc----------------------------------------chHHHHHHHhhcCccccCCCCeEECCEEEEecCccCCC
Confidence 21 2489999999999998 69999999999999999999
Q ss_pred hHHH
Q 000712 781 PTIF 784 (1336)
Q Consensus 781 Pt~~ 784 (1336)
|+..
T Consensus 167 P~~~ 170 (246)
T cd07222 167 PVLP 170 (246)
T ss_pred CCCC
Confidence 9754
No 37
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=99.77 E-value=2.7e-18 Score=191.97 Aligned_cols=161 Identities=20% Similarity=0.253 Sum_probs=118.0
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|||+|||+||++|+||+++|++.. +...+|+|+|||+||++|++++.+ .+.+++.+.+.++.+......
T Consensus 3 LsfsGGG~rG~yh~GVl~aL~e~g---~~~~~d~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~------- 71 (245)
T cd07218 3 LSFAGCGFLGIYHVGVAVCLKKYA---PHLLLNKISGASAGALAACCLLCD-LPLGEMTSDFLRVVREARRHS------- 71 (245)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHhC---cccCCCeEEEEcHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhc-------
Confidence 899999999999999999999973 223479999999999999999876 688888877766544321110
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcc-hHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~-~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
| .. + .+.|+ .+.+++.+++.+... .... ...++.+++| ++.+++.++|+.+
T Consensus 72 --l---------------g~-~-~p~~~l~~~l~~~l~~~lp~d----~~~~---~~~~L~i~~T--~l~~g~~~~~s~f 123 (245)
T cd07218 72 --L---------------GP-F-SPSFNIQTCLLEGLQKFLPDD----AHER---VSGRLHISLT--RVSDGKNVIVSEF 123 (245)
T ss_pred --c---------------cC-C-ccccCHHHHHHHHHHHHCCcc----hHHh---CCCCEEEEEE--ECCCCCeEEEecC
Confidence 0 00 0 12222 456677777776321 1111 1235556665 7889999999976
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCC--CcceeeCCcccccCcccCC
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~y--F~p~~i~~~~~vDGGl~aN 779 (1336)
+. +..+++|++|||++|+| |.|+.++++.|+|||+.+|
T Consensus 124 ~s----------------------------------------~~dLi~al~AS~~IP~~~g~~P~~~~G~~~vDGGv~dn 163 (245)
T cd07218 124 ES----------------------------------------REELLQALLCSCFIPVFSGLLPPKFRGVRYMDGGFSDN 163 (245)
T ss_pred CC----------------------------------------cchHHHHHHHhcCCCcccCCCCeEECCEEEEcCcccCC
Confidence 52 22489999999999999 5678899999999999999
Q ss_pred chH
Q 000712 780 NPT 782 (1336)
Q Consensus 780 NPt 782 (1336)
.|+
T Consensus 164 lP~ 166 (245)
T cd07218 164 LPT 166 (245)
T ss_pred CCC
Confidence 998
No 38
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=99.77 E-value=4e-18 Score=196.52 Aligned_cols=168 Identities=16% Similarity=0.232 Sum_probs=119.0
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
-.-|+|.|||+||++++||+++|++. +.++.+.||.|+|||+||++|++++.+ ++++++.+++......+ .+
T Consensus 12 ~~gLvFsGGGfrGiYHvGVl~aL~E~-gp~ll~~~d~IaGtSAGALvAAl~asG-~s~de~~r~~~~~~~~~-r~----- 83 (382)
T cd07219 12 PHSISFSGSGFLSFYQAGVVDALRDL-APRMLETAHRVAGTSAGSVIAALVVCG-ISMDEYLRVLNVGVAEV-RK----- 83 (382)
T ss_pred CceEEEcCcHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHHHH-HH-----
Confidence 34599999999999999999999985 445556799999999999999999876 78999888876433221 00
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCc-chHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEe
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIF 698 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y-~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lF 698 (1336)
..... + .+.+ -.+.+++.|++.+. +..+. ....++.|++| ++.+++.++|
T Consensus 84 -----------~~lG~--------~-~p~~~l~~~lr~~L~~~LP----~da~e---~~~g~L~IsaT--dl~tGknv~f 134 (382)
T cd07219 84 -----------SFLGP--------L-SPSCKMVQMMRQFLYRVLP----EDSYK---VATGKLHVSLT--RVTDGENVVV 134 (382)
T ss_pred -----------hhccC--------c-cccchHHHHHHHHHHhhCc----HhhHH---hCCCcEEEEEE--ECCCCCEEEE
Confidence 00000 0 0111 11344555555542 11111 12235566666 8889999999
Q ss_pred ecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCC--cceeeCCcccccCcc
Q 000712 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGAI 776 (1336)
Q Consensus 699 rny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF--~p~~i~~~~~vDGGl 776 (1336)
+.|+. +..+.+|++||||+|+|| .|+.++|..|+|||+
T Consensus 135 S~F~S----------------------------------------~~dLidAV~AScaIP~y~G~~Pp~irG~~yVDGGv 174 (382)
T cd07219 135 SEFTS----------------------------------------KEELIEALYCSCFVPVYCGLIPPTYRGVRYIDGGF 174 (382)
T ss_pred eccCC----------------------------------------cchHHHHHHHHccCccccCCcCeEECCEEEEcCCc
Confidence 98752 235899999999999995 466899999999999
Q ss_pred cCCchHHH
Q 000712 777 VANNPTIF 784 (1336)
Q Consensus 777 ~aNNPt~~ 784 (1336)
.+|+|+..
T Consensus 175 sdnlPv~~ 182 (382)
T cd07219 175 TGMQPCSF 182 (382)
T ss_pred cCCcCccC
Confidence 99999854
No 39
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=99.76 E-value=5e-18 Score=190.25 Aligned_cols=165 Identities=16% Similarity=0.231 Sum_probs=116.5
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|||.|||+||++|+|||++|++. |.++...+|.|+|||+||++|++++.+ ++.+++.+.+.++........
T Consensus 2 LslsGGG~~G~yh~GVl~~L~e~-g~~l~~~~~~i~GtSAGAl~aa~~a~g-~~~~~~~~~~~~~~~~~~~~~------- 72 (243)
T cd07204 2 LSFSGCGFLGIYHVGVASALREH-APRLLQNARRIAGASAGAIVAAVVLCG-VSMEEACSFILKVVSEARRRS------- 72 (243)
T ss_pred eeEcchHHHHHHHHHHHHHHHHc-CcccccCCCEEEEEcHHHHHHHHHHhC-CCHHHHHHHHHHHHhhhhhhh-------
Confidence 89999999999999999999986 333322257999999999999999876 788998777766544321110
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcc-hHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~-~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
| +. + .+.+. .+.+++.+.+.+.. ...+. ...++.+++| ++.++++++|+.+
T Consensus 73 --~-g~--------------~--~~~~~~~~~l~~~l~~~lp~----~~~~~---~~~~l~I~~T--~l~~g~~~~~~~f 124 (243)
T cd07204 73 --L-GP--------------L--HPSFNLLKILRQGLEKILPD----DAHEL---ASGRLHISLT--RVSDGENVLVSEF 124 (243)
T ss_pred --c-Cc--------------c--cccchHHHHHHHHHHHHCCh----hHHHh---cCCCEEEEEE--ECCCCCEEEEecC
Confidence 0 00 0 01111 13455556655531 11111 1234556555 8899999999976
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCC--CcceeeCCcccccCcccCC
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAIVAN 779 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~y--F~p~~i~~~~~vDGGl~aN 779 (1336)
+.+ ..+.+|++||||+|+| |.|+.+++..|+|||+.+|
T Consensus 125 ~s~----------------------------------------~~Li~Al~AS~~iP~~~g~~P~~~~G~~~vDGGv~~~ 164 (243)
T cd07204 125 DSK----------------------------------------EELIQALVCSCFIPFYCGLIPPKFRGVRYIDGGLSDN 164 (243)
T ss_pred CCc----------------------------------------hHHHHHHHHhccCCcccCCCCeEECCEEEEeCCcccC
Confidence 522 2488999999999999 5789999999999999999
Q ss_pred chHHH
Q 000712 780 NPTIF 784 (1336)
Q Consensus 780 NPt~~ 784 (1336)
.|+..
T Consensus 165 lP~~~ 169 (243)
T cd07204 165 LPILD 169 (243)
T ss_pred CCCCC
Confidence 99863
No 40
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=7.4e-18 Score=212.88 Aligned_cols=216 Identities=22% Similarity=0.205 Sum_probs=175.2
Q ss_pred CCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEE
Q 000712 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1336)
Q Consensus 124 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 203 (1336)
+++|++|+|++|+|+. +|.. .++|+.|+|++|.+. .++. ...+|+.|+|++|+|+.+|.. +++|+.|+
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~Ld 308 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELS 308 (788)
T ss_pred CCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh-hhhh----chhhcCEEECcCCcccccccc---ccccceeE
Confidence 5789999999999986 4542 468999999999743 3332 236799999999999999863 57899999
Q ss_pred cCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCCC
Q 000712 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPE 283 (1336)
Q Consensus 204 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~ 283 (1336)
|++|+|+.+|... .+|+.|++++|+|+.+|.. ..+|+.|+|++|+|+.++.. ..+|+.|++++|.|+.+|.
T Consensus 309 LS~N~L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~ 379 (788)
T PRK15387 309 VSDNQLASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 379 (788)
T ss_pred CCCCccccCCCCc---ccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCcc
Confidence 9999999888633 4688899999999988842 25899999999999987643 3578899999999998886
Q ss_pred CCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcc-c
Q 000712 284 ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-V 362 (1336)
Q Consensus 284 l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l-~ 362 (1336)
+ ..+|+.|+|++|+|+.++.+. ++++.|++++|.|+.++.. +..+ ..|++++|.+ .
T Consensus 380 l--~~~L~~LdLs~N~Lt~LP~l~--------s~L~~LdLS~N~LssIP~l------------~~~L-~~L~Ls~NqLt~ 436 (788)
T PRK15387 380 L--PSGLKELIVSGNRLTSLPVLP--------SELKELMVSGNRLTSLPML------------PSGL-LSLSVYRNQLTR 436 (788)
T ss_pred c--ccccceEEecCCcccCCCCcc--------cCCCEEEccCCcCCCCCcc------------hhhh-hhhhhccCcccc
Confidence 5 368999999999999865432 4799999999999875432 1122 2278999999 8
Q ss_pred ccccccccccCcEEEcCCCcc
Q 000712 363 VGKDENAVRQLISMISSDNRH 383 (1336)
Q Consensus 363 lp~~l~~L~~L~~L~Ls~N~~ 383 (1336)
+|..+.++++|+.|+|++|+.
T Consensus 437 LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cChHHhhccCCCeEECCCCCC
Confidence 999999999999999999994
No 41
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=99.73 E-value=2.3e-17 Score=184.45 Aligned_cols=165 Identities=18% Similarity=0.175 Sum_probs=114.8
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|||.|||+||++|+||+++|++. +.++.+.||.|+|||+||++|++++.+ .+.+++.+...++.+..=..
T Consensus 7 LsfsGGG~rG~yh~GVl~~L~e~-g~~l~~~~~~i~G~SAGAl~aa~~a~g-~~~~~~~~~~~~~a~~~r~~-------- 76 (249)
T cd07220 7 ISFAGCGFLGVYHVGVASCLLEH-APFLVANARKIYGASAGALTATALVTG-VCLGECGASVIRVAKEARKR-------- 76 (249)
T ss_pred EEEeChHHHHHHHHHHHHHHHhc-CCcccccCCeEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHhhHh--------
Confidence 99999999999999999999987 445556689999999999999999877 67888776666553211000
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcc-hHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHS-ADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNY 701 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~-~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny 701 (1336)
| +. ...+.|. .+.+++.+.+.+. +..... ...++.+++| ++.+++.++|+++
T Consensus 77 --~-------~g---------~~~~~~~l~~~l~~~l~~~lp----~~a~~~---~~~~l~is~T--~~~tg~~~~~s~f 129 (249)
T cd07220 77 --F-------LG---------PLHPSFNLVKILRDGLLRTLP----ENAHEL---ASGRLGISLT--RVSDGENVLVSDF 129 (249)
T ss_pred --h-------cc---------CccccchHHHHHHHHHHHHCC----hhhHHH---CCCcEEEEEE--ECCCCCEEEEecC
Confidence 0 00 0000110 1234444444442 111111 2235666655 7889999999987
Q ss_pred CCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCC--cceeeCCcccccCcccCC
Q 000712 702 QYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYL--DDFSDDVFRWQDGAIVAN 779 (1336)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF--~p~~i~~~~~vDGGl~aN 779 (1336)
... ..+.+|++|||++|.|+ .|+.++|..|+|||+.+|
T Consensus 130 ~s~----------------------------------------~dLi~al~AScsiP~~~g~~P~~~~G~~yvDGGvsdn 169 (249)
T cd07220 130 NSK----------------------------------------EELIQALVCSCFIPVYCGLIPPTLRGVRYVDGGISDN 169 (249)
T ss_pred CCc----------------------------------------chHHHHHHHhccCccccCCCCeeECCEEEEcCCcccC
Confidence 522 24899999999999886 466789999999999999
Q ss_pred chHHH
Q 000712 780 NPTIF 784 (1336)
Q Consensus 780 NPt~~ 784 (1336)
.|+..
T Consensus 170 lPv~~ 174 (249)
T cd07220 170 LPQYE 174 (249)
T ss_pred CCCCC
Confidence 99764
No 42
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=99.71 E-value=6.7e-17 Score=180.17 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=113.5
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|||.|||.+|++|+|||++|++. | +...|+.|+|||+||++|++++.+ ++.+++.+++.++..+.+...
T Consensus 2 lsfsggG~lg~yh~GVl~~L~e~-g--i~~~~~~i~G~SAGAl~aa~~asg-~~~~~~~~~~~~~~~~~~~~~------- 70 (233)
T cd07224 2 FSFSAAGLLFPYHLGVLSLLIEA-G--VINETTPLAGASAGSLAAACSASG-LSPEEALEATEELAEDCRSNG------- 70 (233)
T ss_pred eeecchHHHHHHHHHHHHHHHHc-C--CCCCCCEEEEEcHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcC-------
Confidence 79999999999999999999986 2 433489999999999999999877 688889888887665443221
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCc-chHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCC-cEEEeec
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA-QPFIFRN 700 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y-~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~-~p~lFrn 700 (1336)
..+ -...+++.+++.+. ....+. ..+ .++++.+| ++.++ +...++.
T Consensus 71 ------------------------~~~~~~~~l~~~l~~~lp----~d~~e~-~~~-~~l~i~~T--~~~~~~~~~~v~~ 118 (233)
T cd07224 71 ------------------------TAFRLGGVLRDELDKTLP----DDAHER-CNR-GRIRVAVT--QLFPVPRGLLVSS 118 (233)
T ss_pred ------------------------CcccHHHHHHHHHHHHcC----cHHHHH-hcC-CCEEEEEE--ecccCCCceEEEe
Confidence 001 12345566666653 222222 222 35666666 45444 3555554
Q ss_pred CCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCc---ceeeCCcccccCccc
Q 000712 701 YQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD---DFSDDVFRWQDGAIV 777 (1336)
Q Consensus 701 y~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~---p~~i~~~~~vDGGl~ 777 (1336)
+.. +..+.+|++|||++|+||+ ++.++++.|+|||+.
T Consensus 119 f~~----------------------------------------~~~l~~al~AS~~iP~~~~p~~~v~~~G~~~vDGG~~ 158 (233)
T cd07224 119 FDS----------------------------------------KSDLIDALLASCNIPGYLAPWPATMFRGKLCVDGGFA 158 (233)
T ss_pred cCC----------------------------------------cchHHHHHHHhccCCcccCCCCCeeECCEEEEeCCcc
Confidence 431 1238899999999999998 579999999999999
Q ss_pred CCchHH
Q 000712 778 ANNPTI 783 (1336)
Q Consensus 778 aNNPt~ 783 (1336)
.|.|..
T Consensus 159 ~~~P~~ 164 (233)
T cd07224 159 LFIPPT 164 (233)
T ss_pred cCCCCC
Confidence 999986
No 43
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=99.69 E-value=2.8e-16 Score=177.58 Aligned_cols=135 Identities=22% Similarity=0.340 Sum_probs=98.0
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~ 618 (1336)
|...|+|+|||+||++++|||++|++. | + .+|+|+|||+||++|++++.+ +.+|+ |
T Consensus 68 g~~aLvlsGGg~~g~~h~Gvl~aL~e~-~--l--~~~~i~GtSaGAi~aa~~~~~--~~~El-----------~------ 123 (298)
T cd07206 68 GRTALMLSGGASLGLFHLGVVKALWEQ-D--L--LPRVISGSSAGAIVAALLGTH--TDEEL-----------I------ 123 (298)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHHc-C--C--CCCEEEEEcHHHHHHHHHHcC--CcHHH-----------H------
Confidence 356799999999999999999999885 2 2 379999999999999999875 22333 1
Q ss_pred chhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEE-EEEEeeccCCCcEEE
Q 000712 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVF-TVSTLVNVMPAQPFI 697 (1336)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~-vvsT~~d~~~~~p~l 697 (1336)
+++++.++....++.+ +++| +...+++..
T Consensus 124 ------------------------------------------------gdlTf~EA~~~tgr~lnI~vt--~~~~~~~~~ 153 (298)
T cd07206 124 ------------------------------------------------GDLTFQEAYERTGRIINITVA--PAEPHQNSR 153 (298)
T ss_pred ------------------------------------------------cCCCHHHHHHhcCCEEEEEEE--ECCCCCceE
Confidence 1222222222223322 3333 445565555
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee-----------
Q 000712 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD----------- 766 (1336)
Q Consensus 698 Frny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i----------- 766 (1336)
|-||... .++.+|+|++||||+|++|+|+.+
T Consensus 154 lln~~ts--------------------------------------pnv~i~sAv~AS~slP~~f~pv~l~~k~~~g~~~p 195 (298)
T cd07206 154 LLNALTS--------------------------------------PNVLIWSAVLASCAVPGVFPPVMLMAKNRDGEIVP 195 (298)
T ss_pred EecccCC--------------------------------------CchHHHHHHhhccCccccccCeEEEeecCCCcccc
Confidence 5555411 156799999999999999999986
Q ss_pred --CCcccccCcccCCchHHHH
Q 000712 767 --DVFRWQDGAIVANNPTIFA 785 (1336)
Q Consensus 767 --~~~~~vDGGl~aNNPt~~A 785 (1336)
++..|+|||+..|.|...+
T Consensus 196 ~~~g~~~~DGgv~~~iPv~~l 216 (298)
T cd07206 196 YLPGRKWVDGSVSDDLPAKRL 216 (298)
T ss_pred CCCCCcccCCCcCcchHHHHH
Confidence 6789999999999999873
No 44
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=4.6e-19 Score=216.35 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=44.6
Q ss_pred CCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEE
Q 000712 123 RREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKL 202 (1336)
Q Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 202 (1336)
+.-+|+.|+|++|.+.. .|..+..+.+|+.|+++.|. +...+ ..+.++.+|++|+|.+|.+..+|.++..+++|++|
T Consensus 43 ~~v~L~~l~lsnn~~~~-fp~~it~l~~L~~ln~s~n~-i~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNNQISS-FPIQITLLSHLRQLNLSRNY-IRSVP-SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred heeeeEEeecccccccc-CCchhhhHHHHhhcccchhh-HhhCc-hhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 33345566666655433 45555555555555555552 23333 22335555555555555555555555555555555
Q ss_pred EcCCCCCCC
Q 000712 203 YLDNNKLST 211 (1336)
Q Consensus 203 ~Ls~N~L~~ 211 (1336)
+++.|.+..
T Consensus 120 dlS~N~f~~ 128 (1081)
T KOG0618|consen 120 DLSFNHFGP 128 (1081)
T ss_pred ccchhccCC
Confidence 555555443
No 45
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5e-16 Score=197.62 Aligned_cols=246 Identities=15% Similarity=0.160 Sum_probs=193.6
Q ss_pred CCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEE
Q 000712 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1336)
Q Consensus 124 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 203 (1336)
..+...|+|++++++. +|..+. ++|+.|+|++|++. .++...+ .+|++|+|++|+|+.+|..+. .+|+.|+
T Consensus 177 ~~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 177 KNNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred ccCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChhhh--ccccEEE
Confidence 3467889999999886 666553 58999999999754 4555443 589999999999999997664 5799999
Q ss_pred cCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCCC
Q 000712 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPE 283 (1336)
Q Consensus 204 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~ 283 (1336)
|++|.++.+|..+. .+|+.|+|++|+|+.+|..+. .+|+.|+|++|+|+.++..+. ++|+.|+|++|.|+.+|.
T Consensus 248 Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 248 LSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPE 321 (754)
T ss_pred CcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCc
Confidence 99999999998764 589999999999999998765 589999999999998775543 579999999999998774
Q ss_pred CCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcc-c
Q 000712 284 ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRV-V 362 (1336)
Q Consensus 284 l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l-~ 362 (1336)
.. .++|+.|++++|.++.++.-. .++|+.|++++|+|+.++..+. .. | ..|++++|.+ .
T Consensus 322 ~l-~~sL~~L~Ls~N~Lt~LP~~l-------~~sL~~L~Ls~N~L~~LP~~lp--~~---------L-~~LdLs~N~Lt~ 381 (754)
T PRK15370 322 TL-PPGLKTLEAGENALTSLPASL-------PPELQVLDVSKNQITVLPETLP--PT---------I-TTLDVSRNALTN 381 (754)
T ss_pred cc-cccceeccccCCccccCChhh-------cCcccEEECCCCCCCcCChhhc--CC---------c-CEEECCCCcCCC
Confidence 22 368999999999998854211 2589999999999886543221 11 1 1278889988 8
Q ss_pred ccccccccccCcEEEcCCCcchhHHHhhhhccCccChhhh----cccccccCcchhH
Q 000712 363 VGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVA----MLLMKCDIMQPII 415 (1336)
Q Consensus 363 lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l----~~L~~L~i~~~~l 415 (1336)
+|..+. .+|+.|++++|+ |..||..+..+ ..+..+++..|.+
T Consensus 382 LP~~l~--~sL~~LdLs~N~---------L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 382 LPENLP--AALQIMQASRNN---------LVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCHhHH--HHHHHHhhccCC---------cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 887764 379999999999 88888766554 5567888888744
No 46
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=99.64 E-value=5.4e-15 Score=173.15 Aligned_cols=201 Identities=19% Similarity=0.273 Sum_probs=135.7
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhcccc--ccCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLV--FAEPF 616 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~I--F~~~~ 616 (1336)
|...|+|.|||++|++|+||+++|++. | -.+|+|+|||+|||+|+++|. .+.+|+.+++....-.+ |....
T Consensus 82 GrtAlvlsGGg~~G~~h~Gv~kaL~e~-g----l~p~~i~GtS~Gaivaa~~a~--~~~~e~~~~l~~~~~d~~~~~~~~ 154 (391)
T cd07229 82 GRTALVLQGGSIFGLCHLGVVKALWLR-G----LLPRIITGTATGALIAALVGV--HTDEELLRFLDGDGIDLSAFNRLR 154 (391)
T ss_pred CCEEEEecCcHHHHHHHHHHHHHHHHc-C----CCCceEEEecHHHHHHHHHHc--CCHHHHHHHHhccchhhhhhhhhc
Confidence 457799999999999999999999986 2 236999999999999999997 48899999887532211 11100
Q ss_pred CC---chhhHHH----HHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeec
Q 000712 617 PK---DNEAATW----REKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVN 689 (1336)
Q Consensus 617 ~~---~~~~~~w----~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d 689 (1336)
.. ......| ...+.+++ -.+..+|.+.|++.+++.+ |+++|++++....|+..++....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~l~r~l----------~~G~l~D~~~l~~~lr~~l----gd~TFeEAy~rTgriLnItv~~~ 220 (391)
T cd07229 155 GKKSLGYSGYGWLGTLGRRIQRLL----------REGYFLDVKVLEEFVRANL----GDLTFEEAYARTGRVLNITVAPS 220 (391)
T ss_pred cccccccccccccchHHHHHHHHH----------cCCCcccHHHHHHHHHHHc----CCCcHHHHHHhhCCEEEEEEECC
Confidence 00 0000112 12222222 2466889999999999988 78999998877767665544332
Q ss_pred cCCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCc-ceee--
Q 000712 690 VMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD-DFSD-- 766 (1336)
Q Consensus 690 ~~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~-p~~i-- 766 (1336)
...+.|.++...+.| ++.||.|++||||.|+.|+ |+..
T Consensus 221 ~~~~~p~LLNylTaP---------------------------------------nVlIwsAv~aS~a~p~~~~~~~~L~~ 261 (391)
T cd07229 221 AVSGSPNLLNYLTAP---------------------------------------NVLIWSAALASNASSAALYRSVTLLC 261 (391)
T ss_pred CCCCCCeeeecCCCC---------------------------------------CchHHHHHHHHcCCccccCCCceEEE
Confidence 335567776643322 7899999999999998876 6532
Q ss_pred ---CC--------------cccccCcccCCchHHHHHHHHHHhCCCCCCCEEEEeC
Q 000712 767 ---DV--------------FRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIG 805 (1336)
Q Consensus 767 ---~~--------------~~~vDGGl~aNNPt~~Ai~EA~~l~p~~~i~~VVSIG 805 (1336)
+| ..+.||.+....|..- ...+|. .+- .|||--
T Consensus 262 Kd~~G~ivp~~~~~~~~~~~~~~dgs~~~DlP~~r----L~elFN-VNh-fIVSQ~ 311 (391)
T cd07229 262 KDETGSIVPWPPVQVLFFRSWRGANYSERESPLAR----LSELFN-VNH-FIVSQA 311 (391)
T ss_pred ECCCCCEeeCCCcccccccccccCCCccccChHHH----HHHHhC-CCc-eEEEcc
Confidence 11 1256788888888843 445663 222 477753
No 47
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=99.63 E-value=3.1e-15 Score=180.64 Aligned_cols=183 Identities=27% Similarity=0.413 Sum_probs=130.8
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
-.-|+|.|||+||++|+|||++||+. |+| ||+|+|||+||++++++|-. .+.-.+....++ .|.+
T Consensus 839 aIgLVLGGGGARG~ahiGvl~ALeE~-GIP----vD~VGGTSIGafiGaLYA~e-~d~~~v~~rak~----f~~~----- 903 (1158)
T KOG2968|consen 839 AIGLVLGGGGARGAAHIGVLQALEEA-GIP----VDMVGGTSIGAFIGALYAEE-RDLVPVFGRAKK----FAGK----- 903 (1158)
T ss_pred eEEEEecCcchhhhhHHHHHHHHHHc-CCC----eeeeccccHHHhhhhhhhcc-CcchHHHHHHHH----HHHH-----
Confidence 34599999999999999999999996 544 69999999999999999844 233222222221 2211
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEee
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFr 699 (1336)
....|...++-.|. .-+.|.+..|..-+.+.| ||..++|...+. |+++| |+......+.+
T Consensus 904 -mssiw~~llDLTyP----------~tsmftGh~FNrsI~~~F----gd~~IEDlWi~y---fciTT--dIt~S~mriH~ 963 (1158)
T KOG2968|consen 904 -MSSIWRLLLDLTYP----------ITSMFTGHEFNRSIHSTF----GDVLIEDLWIPY---FCITT--DITSSEMRVHR 963 (1158)
T ss_pred -HHHHHHHHHhcccc----------chhccchhhhhhHHHHHh----cccchhhhhhee---eeccc--ccchhhhhhhc
Confidence 22345444443332 235677788888899999 677888877654 45555 67666655555
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee--CCcccccCccc
Q 000712 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD--DVFRWQDGAIV 777 (1336)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i--~~~~~vDGGl~ 777 (1336)
| ..+|.-+|||++.-+|.||..- +|..++|||.+
T Consensus 964 ~--------------------------------------------G~~WrYvRASMsLaGylPPlcdp~dGhlLlDGGYv 999 (1158)
T KOG2968|consen 964 N--------------------------------------------GSLWRYVRASMSLAGYLPPLCDPKDGHLLLDGGYV 999 (1158)
T ss_pred C--------------------------------------------CchHHHHHhhccccccCCCCCCCCCCCEEeccccc
Confidence 3 3499999999999999999866 78999999999
Q ss_pred CCchHHHHHHHHHHhCCCCCCCEEEEeCCC
Q 000712 778 ANNPTIFAIREAQLLWPDTRIDCLVSIGCG 807 (1336)
Q Consensus 778 aNNPt~~Ai~EA~~l~p~~~i~~VVSIGTG 807 (1336)
+|-|+++ ++.+. .+..+.|.+|+-
T Consensus 1000 nNlPadv----mrslG--a~~iiAiDVGS~ 1023 (1158)
T KOG2968|consen 1000 NNLPADV----MRSLG--AKVIIAIDVGSQ 1023 (1158)
T ss_pred ccCcHHH----HHhcC--CcEEEEEeccCc
Confidence 9999998 66654 333346666754
No 48
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=99.63 E-value=4.4e-15 Score=167.74 Aligned_cols=141 Identities=20% Similarity=0.404 Sum_probs=103.1
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPK 618 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~ 618 (1336)
|-..|+|.|||+||++++||+++|++. | + .+|+|+|||+||++|++++. .+.+|+.++++
T Consensus 67 G~~aLvlsGGg~~g~~h~GVlkaL~e~-g--l--~p~~i~GsSaGAivaa~~~~--~t~~El~~~~~------------- 126 (323)
T cd07231 67 GRTALLLSGGAALGTFHVGVVRTLVEH-Q--L--LPRVIAGSSVGSIVCAIIAT--RTDEELQSFFR------------- 126 (323)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHHc-C--C--CCCEEEEECHHHHHHHHHHc--CCHHHHHHHHH-------------
Confidence 356899999999999999999999986 3 2 47999999999999999986 36777766651
Q ss_pred chhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCC-CcEEE
Q 000712 619 DNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMP-AQPFI 697 (1336)
Q Consensus 619 ~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~-~~p~l 697 (1336)
+.+ |+++|.+++....|+..++. .+... ..|.+
T Consensus 127 -----------------------------------------~~~----gd~TF~Eay~~tgr~lnI~v-~~~~~~~~~~l 160 (323)
T cd07231 127 -----------------------------------------ALL----GDLTFQEAYDRTGRILGITV-CPPRKSEPPRL 160 (323)
T ss_pred -----------------------------------------HHc----CcccHHHHHhccCCEEEEEE-ecccCCCCcee
Confidence 112 34555555544444443332 23333 45555
Q ss_pred eecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCccee------------
Q 000712 698 FRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFS------------ 765 (1336)
Q Consensus 698 Frny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~------------ 765 (1336)
+...+.| ++.||.|++||||.|++|+|+.
T Consensus 161 ln~~T~P---------------------------------------nv~I~sAv~aS~a~P~if~~~~L~~Kd~~G~ivp 201 (323)
T cd07231 161 LNYLTSP---------------------------------------HVVIWSAVAASCAFPGLFEAQELMAKDRFGEIVP 201 (323)
T ss_pred eccCCCC---------------------------------------CcHHHHHHHHHcCChhhccceeEEEECCCCCEee
Confidence 5533322 7889999999999999999986
Q ss_pred eC-------CcccccCcccCCchHHH
Q 000712 766 DD-------VFRWQDGAIVANNPTIF 784 (1336)
Q Consensus 766 i~-------~~~~vDGGl~aNNPt~~ 784 (1336)
.. ...|+||++..+.|...
T Consensus 202 ~~~~~~~~~~~~~~DGs~~~dlP~~r 227 (323)
T cd07231 202 YHPPGKVSSPRRWRDGSLEQDLPMQQ 227 (323)
T ss_pred ccCCCccccccccccCcccccCchHH
Confidence 22 24699999999999877
No 49
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.6e-18 Score=171.73 Aligned_cols=162 Identities=27% Similarity=0.332 Sum_probs=121.7
Q ss_pred ccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcE
Q 000712 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKV 224 (1336)
Q Consensus 145 l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 224 (1336)
+.++.+++.|.|++|+++ .+++. +..+.+|+.|++++|+|+.+|..++.+++|+.|+++-|++..+|..|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence 334566677777777632 33333 3477778888888888888888888888888888888888888888888888888
Q ss_pred EEccCCcCc--cccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCCCCC
Q 000712 225 LIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANIRIV 301 (1336)
Q Consensus 225 L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp-~l~~l~~L~~L~Ls~N~l~ 301 (1336)
|||.+|++. .+|..|..+..|+.|+|++|.+.-++++++++++|+.|.+..|.+-.+| +++.++.|+.|++.+|+++
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee
Confidence 888888877 6777777778888888888888777777888888888888888777666 6777788888888888877
Q ss_pred C-Cccccc
Q 000712 302 A-DENLRS 308 (1336)
Q Consensus 302 ~-~~~L~~ 308 (1336)
- ++.+..
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 6 445554
No 50
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1e-17 Score=204.63 Aligned_cols=224 Identities=21% Similarity=0.184 Sum_probs=125.3
Q ss_pred CCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEcc
Q 000712 149 TRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVD 228 (1336)
Q Consensus 149 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 228 (1336)
++|+.|+.++|.+....... .-.+|+++++++|+++.+|..+..+.+|+.|++++|.|+.+|..+..+++|+.|.+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeecccc---ccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 45566666666543211111 235677777777777777777777777777777777777777777777777777777
Q ss_pred CCcCccccccccCCCCCCEEEeccccccCCccc-cCCCCC-CcEEEccCCCCCCCCCCC--CCCCCCEEEccCCCCCC--
Q 000712 229 NNMLVCVPVELRECVGLVELSLEHNRLVRPLLD-FRAMAE-LKILRLFGNPLEFLPEIL--PLLKLRHLSLANIRIVA-- 302 (1336)
Q Consensus 229 ~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~-l~~L~~-L~~L~Ls~N~L~~lp~l~--~l~~L~~L~Ls~N~l~~-- 302 (1336)
.|.+..+|..+..+++|++|+|..|+|...++. |.-+.. |+.|+.+.|++..+|... .+..|+.|++.+|.+++
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 777777777777777777777777777766542 222221 444444444444444222 23344555555555544
Q ss_pred CcccccccccccCCCCCeeccCCCCCcccccc-c--------cccCCCCchhhHHHHHhh-----hhcCCCcc-cccccc
Q 000712 303 DENLRSVNVQIEMENNSYFGASRHKLSAFFSL-I--------FRFSSCHHPLLASALAKI-----MQDQENRV-VVGKDE 367 (1336)
Q Consensus 303 ~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~-l--------~~Ls~l~~~~l~~~L~~l-----L~Ls~N~l-~lp~~l 367 (1336)
++.+. ...+|+.|++++|.|..++.. + ++++.+++..++..+..+ |-..+|++ .+| ++
T Consensus 376 ~p~l~------~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 376 FPVLV------NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-EL 448 (1081)
T ss_pred hhhhc------cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hh
Confidence 22222 244555555555555544321 1 122222222222222211 44455555 555 56
Q ss_pred cccccCcEEEcCCCc
Q 000712 368 NAVRQLISMISSDNR 382 (1336)
Q Consensus 368 ~~L~~L~~L~Ls~N~ 382 (1336)
.++++|+.+|+|.|+
T Consensus 449 ~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNN 463 (1081)
T ss_pred hhcCcceEEecccch
Confidence 666666666666666
No 51
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=5.8e-15 Score=199.55 Aligned_cols=184 Identities=21% Similarity=0.224 Sum_probs=135.5
Q ss_pred cccchhhhCCCCCCcEEEeeCCC------CCCCCcccccCCC-CcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCC
Q 000712 114 VGVEMRVVKRREPLRAVVLTKGV------GSGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGL 186 (1336)
Q Consensus 114 ~~~~~~~l~~l~~L~~L~Ls~N~------l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L 186 (1336)
+.+....|..+.+|+.|.+.++. +...+|..|..++ +|+.|++.+|. ...+|..+ .+.+|+.|+|.+|+|
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l 623 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKL 623 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCccc
Confidence 34566789999999999997653 2334666676664 68999998885 34444433 678899999999999
Q ss_pred CccccccCCCCCCcEEEcCCCC-CCCCccccCCCCCCcEEEccCCc-CccccccccCCCCCCEEEecccc-ccCCccccC
Q 000712 187 SALPVDLTRLPVLEKLYLDNNK-LSTLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNR-LVRPLLDFR 263 (1336)
Q Consensus 187 ~~lp~~l~~L~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~-l~~~~~~l~ 263 (1336)
..++..+..+++|+.|+|++|. +..+| .+..+++|+.|+|++|. +..+|..+.++++|+.|+|++|. +..++..+
T Consensus 624 ~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 624 EKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred cccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 9888888889999999998764 55777 47888899999998875 56888888889999999998864 44444333
Q ss_pred CCCCCcEEEccCCC-CCCCCCCCCCCCCCEEEccCCCCCCCc
Q 000712 264 AMAELKILRLFGNP-LEFLPEILPLLKLRHLSLANIRIVADE 304 (1336)
Q Consensus 264 ~L~~L~~L~Ls~N~-L~~lp~l~~l~~L~~L~Ls~N~l~~~~ 304 (1336)
++++|+.|+|++|. +..+|.+ ..+|+.|+|++|.|..++
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccccc
Confidence 67788888888774 3355543 356777777777766543
No 52
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.60 E-value=5.2e-14 Score=152.10 Aligned_cols=170 Identities=24% Similarity=0.304 Sum_probs=105.2
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhc--cccccCCC
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLG--KLVFAEPF 616 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~--~~IF~~~~ 616 (1336)
+--.|++.|||+||++++|||++++..- ...||+|.|||+||..+..+-..+ ....+....++. ++.|..
T Consensus 10 ~kvaLV~EGGG~RgifTAGVLD~fl~a~----~~~f~~~~GvSAGA~n~~aYls~Q--~gra~~~~~~yt~d~ry~~~-- 81 (292)
T COG4667 10 GKVALVLEGGGQRGIFTAGVLDEFLRAN----FNPFDLVVGVSAGALNLVAYLSKQ--RGRARRVIVEYTTDRRYFGP-- 81 (292)
T ss_pred CcEEEEEecCCccceehHHHHHHHHHhc----cCCcCeeeeecHhHHhHHHHhhcC--CchHHHHHHHhhcchhhcch--
Confidence 4557999999999999999999999541 356999999999999988875332 112222222222 222221
Q ss_pred CCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCC-cE
Q 000712 617 PKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPA-QP 695 (1336)
Q Consensus 617 ~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~-~p 695 (1336)
++.+..+..++.+.+-+.+-+. .-.+.++.......+.++.+| +..++ ++
T Consensus 82 -----------------------~~~vr~gn~~n~d~~~~~~~~~----~~~fD~~tf~~~~~k~~~~~~--~~~~g~~~ 132 (292)
T COG4667 82 -----------------------LSFVRGGNYFNLDWAFEETPQK----LFPFDFDTFSQDKGKFFYMAT--CRQDGEAV 132 (292)
T ss_pred -----------------------hhhhccCcccchHHHHhhccCc----CCCccHHHHhcccCCeEEEEE--eccCCccc
Confidence 1111223344433322222111 112233333334445555555 34444 44
Q ss_pred EEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccCc
Q 000712 696 FIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDGA 775 (1336)
Q Consensus 696 ~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDGG 775 (1336)
++|..- ..-.-|++|||||+|.|-++++++|..|+|||
T Consensus 133 ~~~~~~------------------------------------------~~~~m~viRASSaiPf~~~~V~i~G~~YlDGG 170 (292)
T COG4667 133 YYFLPD------------------------------------------VFNWLDVIRASSAIPFYSEGVEINGKNYLDGG 170 (292)
T ss_pred eeeccc------------------------------------------HHHHHHHHHHhccCCCCCCCeEECCEecccCc
Confidence 444411 12367999999999988899999999999999
Q ss_pred ccCCchHHHHHH
Q 000712 776 IVANNPTIFAIR 787 (1336)
Q Consensus 776 l~aNNPt~~Ai~ 787 (1336)
|....|+..|+.
T Consensus 171 IsdsIPvq~a~~ 182 (292)
T COG4667 171 ISDSIPVKEAIR 182 (292)
T ss_pred ccccccchHHHH
Confidence 999999887543
No 53
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=99.60 E-value=3.4e-15 Score=156.23 Aligned_cols=143 Identities=22% Similarity=0.327 Sum_probs=103.1
Q ss_pred EEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCchhh
Q 000712 543 LSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKDNEA 622 (1336)
Q Consensus 543 LsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~~~~ 622 (1336)
|+|+|||+||++++++|++|+++. +.+.||+|+|||+|+++|++++ + ..|
T Consensus 1 l~~~GGg~~~~~~~gvl~~l~~~~---~~~~~~~~~G~SaGa~~~~~~~-p----------------~~~---------- 50 (155)
T cd01819 1 LSFSGGGFRGMYHAGVLSALAERG---LLDCVTYLAGTSGGAWVAATLY-P----------------PSS---------- 50 (155)
T ss_pred CEEcCcHHHHHHHHHHHHHHHHhC---CccCCCEEEEEcHHHHHHHHHh-C----------------hhh----------
Confidence 689999999999999999999863 3468999999999999999997 0 000
Q ss_pred HHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEeecCC
Q 000712 623 ATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQ 702 (1336)
Q Consensus 623 ~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny~ 702 (1336)
.+ +. ...+.+.+ ....+.++++| +..++++.+|....
T Consensus 51 -~~------------------------~~-~~~~~~~~---------------~~~~~~~i~~T--~~~tG~~~~~~~~~ 87 (155)
T cd01819 51 -SL------------------------DN-KPRQSLEE---------------ALSGKLWVSFT--PVTAGENVLVSRFV 87 (155)
T ss_pred -hh------------------------hh-hhhhhhHH---------------hcCCCeEEEEE--EcCCCcEEEEeccc
Confidence 00 00 00011110 01123345555 78889888877432
Q ss_pred CCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceee------------CCcc
Q 000712 703 YPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSD------------DVFR 770 (1336)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i------------~~~~ 770 (1336)
++..+++|++||++.|.+|+++.. ++..
T Consensus 88 ----------------------------------------~~~~~~~av~aS~s~P~~f~~v~~~~~~~~~~~~~~~g~~ 127 (155)
T cd01819 88 ----------------------------------------SKEELIRALFASGSWPSYFGLIPPAELYTSKSNLKEKGVR 127 (155)
T ss_pred ----------------------------------------cchHHHHHHhHHhhhhhhcCCcccccccccccccccCCeE
Confidence 123589999999999999998755 8999
Q ss_pred cccCcccCCchHHHHHHHHHHhCCCCCCCEEEEe
Q 000712 771 WQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSI 804 (1336)
Q Consensus 771 ~vDGGl~aNNPt~~Ai~EA~~l~p~~~i~~VVSI 804 (1336)
|+|||+.+|+|+... +-|++..+++||.
T Consensus 128 lVDGG~~~~iP~~~~------~~~~r~~~viis~ 155 (155)
T cd01819 128 LVDGGVSNNLPAPVL------LRPGRGVTLTISP 155 (155)
T ss_pred EeccceecCcCCccc------ccCCCCCeEEeCC
Confidence 999999999999875 4456667777763
No 54
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-17 Score=167.54 Aligned_cols=167 Identities=23% Similarity=0.281 Sum_probs=150.3
Q ss_pred hhhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCC
Q 000712 118 MRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLP 197 (1336)
Q Consensus 118 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~ 197 (1336)
+..+-.+.+++.|.||+|+++. +|..+..|.+|+.|++++|++ .. .+..+..+++|+.|++.-|++..+|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqi-e~-lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQI-EE-LPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchh-hh-cChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 3456667788999999999987 677899999999999999973 33 34455699999999999999999999999999
Q ss_pred CCcEEEcCCCCCC--CCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccC
Q 000712 198 VLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFG 275 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~ 275 (1336)
.|+.|||.+|++. .+|..|..++.|+-|+|++|.+..+|..++++++|+.|.+.+|.+-.++..++.++.|+.|++.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence 9999999999999 89999999999999999999999999999999999999999999999998999999999999999
Q ss_pred CCCCCCC-CCCCC
Q 000712 276 NPLEFLP-EILPL 287 (1336)
Q Consensus 276 N~L~~lp-~l~~l 287 (1336)
|+++.+| ++.++
T Consensus 183 nrl~vlppel~~l 195 (264)
T KOG0617|consen 183 NRLTVLPPELANL 195 (264)
T ss_pred ceeeecChhhhhh
Confidence 9999665 55543
No 55
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.59 E-value=3.7e-15 Score=179.35 Aligned_cols=345 Identities=20% Similarity=0.237 Sum_probs=222.4
Q ss_pred CCCCCCCceEEEecCCchhHHHHHHHHHHHHHhc----C----CCcccccce-EEeechHHHHHHHHH------cccCCH
Q 000712 533 RQVPKQGLRILSMDGGGMKGLATVQILKEIEKGT----G----KRIHELFDL-VCGTSTGGMLAIALA------VKLMTL 597 (1336)
Q Consensus 533 ~~~~~~~~rILsLDGGGiRGl~~l~iL~~Le~~~----g----~~i~~~FDl-IaGTStGgIiA~~La------~~~~s~ 597 (1336)
++..+..++||+|||||+||+++..++..+|.++ | .++.++||+ ++|+++||++++|+- ++++.+
T Consensus 28 ~~~~~~~~~~lsld~gg~~gi~~~~s~~~~~~~l~~~~g~~~~~~~a~~fDv~~~g~~~~gl~~aml~a~~~~~~P~~~a 107 (503)
T KOG0513|consen 28 DPSYGGLVTILSLDGGGSRGINQGVSLAYLELRLQNIDGDPSAARLADYFDVSIAGTNTGGLITAMLFAPNDCGRPRFGA 107 (503)
T ss_pred CccccccceEEEEcCccceehhhhhhhcccHHHHHhccCChHhhHhhhccCceeeccCCchhhhhhhhccccccCccccc
Confidence 3455578999999999999999999999988754 2 357899999 999999999999994 557778
Q ss_pred HHH-HHHHHHhccccccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcch------HHHHHHHHHHhcCCCcchh
Q 000712 598 DQC-EEIYKNLGKLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSA------DQFERLLKEMCADEDGDLL 670 (1336)
Q Consensus 598 ~e~-~~~y~~l~~~IF~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~------~~Le~~Lk~~~~~~~g~~~ 670 (1336)
.++ ..+|.+.++.+|.+..........|. ..++....+.+|+. .+.....+++. |+..
T Consensus 108 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-----------~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~----g~t~ 172 (503)
T KOG0513|consen 108 TDILWKFNLEKAPKLLEKFDDPNFIKGDLN-----------LALRILVSGDKYSGAEVLLTKYEIADAREVL----GNTK 172 (503)
T ss_pred cchhhhhhhcCCCccccccccccccccccc-----------cceeeeecCccccceeecccccccchhhhhc----CCce
Confidence 888 88999999888876421100000111 11233344555554 33333333333 5666
Q ss_pred hhhhhcCCCeEEEEEEeeccCCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHH
Q 000712 671 IESSVKNIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQA 750 (1336)
Q Consensus 671 ~~~~~~~~~kv~vvsT~~d~~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA 750 (1336)
+..++.+... .++..+.++....|.+|+.|....+. .....++.+++.
T Consensus 173 L~~tl~~~~~-~~~i~~ldl~~~~P~lf~~~~~~~~~-------------------------------~v~~~~~~~~~~ 220 (503)
T KOG0513|consen 173 LHLTLTKENL-LVVIPCLDLKSLTPNLFSIYDALGTK-------------------------------IVPLLDFKAIDI 220 (503)
T ss_pred eeeeccCCCc-ceEEEeeccCcCCceeeeeecccccc-------------------------------chhhhhhhhhhh
Confidence 6666655333 45566789999999999988744320 011347789999
Q ss_pred HHHh--cCCCCCCcc-eee---CC------cccccCc-ccCCchHHHHHHHHHH---hCC----------CCCCCEEEEe
Q 000712 751 IRAS--SAAPYYLDD-FSD---DV------FRWQDGA-IVANNPTIFAIREAQL---LWP----------DTRIDCLVSI 804 (1336)
Q Consensus 751 ~RAS--SAAP~yF~p-~~i---~~------~~~vDGG-l~aNNPt~~Ai~EA~~---l~p----------~~~i~~VVSI 804 (1336)
|++| +|+|++|+| +.. ++ ..++||| +.+|||+..|+.+... ..| ..+.-+|.|+
T Consensus 221 c~~t~~sa~~~~f~~~~~~~~~Dg~~~~~~~~~~~~g~~~m~n~t~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~lv~~~ 300 (503)
T KOG0513|consen 221 CIDTYGSAAPTIFPPILGFPSEDGQGIKTVCVLLDGGDIAMNNPTLHAITHVTANKRPFPPLLGLFRYRLRVDDNLVLSD 300 (503)
T ss_pred hhccccccCccccCcccccccccccccceeeEEecchhhhccCchHhhhhhhhhhcccCCcccccccccccccceEEEec
Confidence 9999 999999999 543 22 3589999 9999999999987732 222 1223479999
Q ss_pred CCCCCCCCc-----C---CCCcccccccc-------hhhh--hhhcHHHHH----HHHHHHcccCCC-CCEEEEccCCC-
Q 000712 805 GCGSVPTKT-----R---RGGWRYLDTGQ-------VLIE--SACSVDRAE----EALSTLLPMLPE-IQYYRFNPVDE- 861 (1336)
Q Consensus 805 GTG~~~~~~-----~---~~~w~~l~~~~-------~li~--~~~s~d~v~----~~~~~l~~~l~~-~~YfRfnp~~~- 861 (1336)
|+|....+. . ...|+++.|.. ++.+ ...+.+.++ ++....+..+.+ .+|.|++-.+.
T Consensus 301 G~G~~~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~~s~d~v~~~y~~~k~~~F~~~r~~~~~~~Ie~~~~~ 380 (503)
T KOG0513|consen 301 GGGIPIIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALDGSSDEVDRMYLQMKDVVFDGLRSEYNYVRIECAIDR 380 (503)
T ss_pred CCCChhHHHHHhHHHhcccccccccccccccCcCceeehhhhhcccHHHHHHHHHHHhHHhhhcccCCCCccchhhhhhc
Confidence 999862221 1 36788888865 5544 566778888 566666665554 89999984322
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHH--HHHHHhcCCCCChhhHHhhhhcccCCCCc-cCCccccCCccccc
Q 000712 862 -RCEMELDETDPAEWLKLEAAVDEYINNNSESFK--NVCERLLLPFQQDEKWSENLKSQHFPRGK-VSNTDEISPSLGWR 937 (1336)
Q Consensus 862 -~~~i~LDe~~~~~~~~l~~~t~~Yl~~n~~~~~--~v~~~Ll~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 937 (1336)
.+.-..-+++. +..+..... ...+.|+..|+. +. ....++ +.....|.+.+.|+
T Consensus 381 ~~G~~~~~di~~-------------~~~nl~~~~~~~~~~~l~~~rn~--------~~-~i~~~~~~~~~~snde~~~~~ 438 (503)
T KOG0513|consen 381 LFGDAPSMDIDG-------------IRLNLTGLLVDITGEELLMARNY--------RH-NINGGKPRSEEVSNDEALEEP 438 (503)
T ss_pred ccCccccccCCc-------------chhhhhhhhccccHHHHHHhhcc--------cc-ccccccccccccccchhhhhH
Confidence 11222222221 111111111 134444444331 22 122233 44455889999999
Q ss_pred cchhhhhcc
Q 000712 938 RNTLLVEAM 946 (1336)
Q Consensus 938 ~~~l~~e~~ 946 (1336)
+..++.|+.
T Consensus 439 ~~~l~we~~ 447 (503)
T KOG0513|consen 439 AMQLVWEAK 447 (503)
T ss_pred HHHHHHHHH
Confidence 999999965
No 56
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=99.58 E-value=1.4e-14 Score=166.22 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=120.3
Q ss_pred ceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 540 LRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 540 ~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
---|+|.|||.+|++|+||+++|.++. .++....+-|+|||+|||+|++++.+ .++++|.+...++.+.+=..
T Consensus 9 ~~~LsfSGgGflG~yHvGV~~~L~e~~-p~ll~~~~~iaGaSAGAL~aa~~a~g-~~~~~~~~~i~~ia~~~r~~----- 81 (405)
T cd07223 9 GWNLSFSGAGYLGLYHVGVTECLRQRA-PRLLQGARRIYGSSSGALNAVSIVCG-KSADFCCSNLLGMVKHLERL----- 81 (405)
T ss_pred CEEEEEeCcHHHHHHHHHHHHHHHHhC-chhhccCCeeeeeCHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhhhh-----
Confidence 345999999999999999999999873 34444557799999999999999876 78987766655443221000
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCc-chHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEe
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKH-SADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIF 698 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y-~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lF 698 (1336)
+.+..++.| -.+.+++.|++++.+.. .. .-..+..|.+| ++..++.++.
T Consensus 82 ---------------------~lG~~~p~f~l~~~lr~~L~~~LP~da----He---~~sgrL~ISlT--~l~~gknvlv 131 (405)
T cd07223 82 ---------------------SLGIFHPAYAPIEHIRQQLQESLPPNI----HI---LASQRLGISMT--RWPDGRNFIV 131 (405)
T ss_pred ---------------------ccCCCCccccHHHHHHHHHHHhCCchh----hH---HhCCceEEEEE--EccCCceEEe
Confidence 001112233 24556777777764211 11 11235666666 6888999998
Q ss_pred ecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCC--CcceeeCCcccccCcc
Q 000712 699 RNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYY--LDDFSDDVFRWQDGAI 776 (1336)
Q Consensus 699 rny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~y--F~p~~i~~~~~vDGGl 776 (1336)
++|.. +..+.||+.|||.+|+| |.|..++|..|||||+
T Consensus 132 S~F~S----------------------------------------redLIqALlASc~IP~y~g~~P~~~rG~~yVDGGv 171 (405)
T cd07223 132 TDFAT----------------------------------------RDELIQALICTLYFPFYCGIIPPEFRGERYIDGAL 171 (405)
T ss_pred cCCCC----------------------------------------HHHHHHHHHHhccCccccCCCCceECCEEEEcCcc
Confidence 88862 23499999999999999 8899999999999999
Q ss_pred cCCchHH
Q 000712 777 VANNPTI 783 (1336)
Q Consensus 777 ~aNNPt~ 783 (1336)
.+|-|..
T Consensus 172 snNLP~~ 178 (405)
T cd07223 172 SNNLPFS 178 (405)
T ss_pred cccCCCc
Confidence 9999974
No 57
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-16 Score=179.28 Aligned_cols=203 Identities=24% Similarity=0.282 Sum_probs=136.8
Q ss_pred CCCceEEeccCCCCCCccccccccccchhhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccc
Q 000712 91 PEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFC 170 (1336)
Q Consensus 91 ~~~~~~l~l~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~ 170 (1336)
+.+.+.+.|..... ..+...+|..+++|+.|||++|+|+.+-|++|.+|.+|..|-+.+|+-+..++...|
T Consensus 66 P~~tveirLdqN~I---------~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 66 PPETVEIRLDQNQI---------SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CCcceEEEeccCCc---------ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 34556677766443 236677999999999999999999999999999999999988877445777888888
Q ss_pred cCCCCCcEEEcCCCCCCccc-cccCCCCCCcEEEcCCCCCCCCcc-ccCCCCCCcEEEccCCcCc---c-----------
Q 000712 171 DHWKTVTAVSLCGLGLSALP-VDLTRLPVLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVDNNMLV---C----------- 234 (1336)
Q Consensus 171 ~~L~~L~~L~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~L~---~----------- 234 (1336)
++|..|+.|.+.-|++.-++ ..|..|++|..|.+-.|.+..++. .+..+..++.+.+..|.+. .
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~ 216 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN 216 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence 88888888888888777554 345666777777777766665554 4555555555555544411 0
Q ss_pred ----------------------------------c--------------cc-cccCCCCCCEEEeccccccCCcc-ccCC
Q 000712 235 ----------------------------------V--------------PV-ELRECVGLVELSLEHNRLVRPLL-DFRA 264 (1336)
Q Consensus 235 ----------------------------------l--------------p~-~l~~L~~L~~L~Ls~N~l~~~~~-~l~~ 264 (1336)
+ |. .|.+|++|+.|+|++|+|+++.+ .|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 0 00 23445666666666666666553 4666
Q ss_pred CCCCcEEEccCCCCCCCC--CCCCCCCCCEEEccCCCCCC
Q 000712 265 MAELKILRLFGNPLEFLP--EILPLLKLRHLSLANIRIVA 302 (1336)
Q Consensus 265 L~~L~~L~Ls~N~L~~lp--~l~~l~~L~~L~Ls~N~l~~ 302 (1336)
+.+|+.|.|..|+|..+. .|.++..|+.|+|.+|+|+.
T Consensus 297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence 666666666666666444 35556666666666666654
No 58
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=4.4e-14 Score=191.05 Aligned_cols=261 Identities=19% Similarity=0.128 Sum_probs=198.3
Q ss_pred hhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCC-CCCccccccCCCCC
Q 000712 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPV 198 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~L~~lp~~l~~L~~ 198 (1336)
.+..+++|+.|+|++|.....+| .+..+++|+.|+|++|.....++ ..+.++++|+.|+|++| .++.+|..+ ++++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp-~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELP-SSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccc-hhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 45678999999999886555566 48889999999999997655555 45679999999999997 488898766 7999
Q ss_pred CcEEEcCCCCCC-CCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCc-------c-ccCCCCCCc
Q 000712 199 LEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL-------L-DFRAMAELK 269 (1336)
Q Consensus 199 L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~-------~-~l~~L~~L~ 269 (1336)
|++|+|++|... .+|.. ..+|+.|+|++|.+..+|..+ .+++|++|++.++....+. + .+..+++|+
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccch
Confidence 999999998643 66642 468999999999999999765 6889999998875432221 1 123457899
Q ss_pred EEEccCCCC-CCCC-CCCCCCCCCEEEccCCC-CCCCcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhh
Q 000712 270 ILRLFGNPL-EFLP-EILPLLKLRHLSLANIR-IVADENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLL 346 (1336)
Q Consensus 270 ~L~Ls~N~L-~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l 346 (1336)
.|+|++|.. ..+| .+.++++|+.|+|++|. +..++.. +.+++|+.|++++|..-...+.+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~------~~L~sL~~L~Ls~c~~L~~~p~~----------- 844 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG------INLESLESLDLSGCSRLRTFPDI----------- 844 (1153)
T ss_pred heeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC------CCccccCEEECCCCCcccccccc-----------
Confidence 999999864 4666 68899999999999874 4443322 24778999999886432221111
Q ss_pred HHHHHhhhhcCCCcc-cccccccccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcch
Q 000712 347 ASALAKIMQDQENRV-VVGKDENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQP 413 (1336)
Q Consensus 347 ~~~L~~lL~Ls~N~l-~lp~~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~ 413 (1336)
+..+ +.|+|++|.+ .+|.++..+++|+.|+|++|+. |..+|..+..+.+|..+++.+.
T Consensus 845 ~~nL-~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~--------L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 845 STNI-SDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN--------LQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cccc-CEeECCCCCCccChHHHhcCCCCCEEECCCCCC--------cCccCcccccccCCCeeecCCC
Confidence 1111 1267888888 8999999999999999999875 8888888888888988887764
No 59
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=99.49 E-value=5.4e-13 Score=166.94 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=131.6
Q ss_pred EEEecCCchhHHHHHHHHHHHHHhcCC------------------------------CcccccceEEeechHHHHHHHHH
Q 000712 542 ILSMDGGGMKGLATVQILKEIEKGTGK------------------------------RIHELFDLVCGTSTGGMLAIALA 591 (1336)
Q Consensus 542 ILsLDGGGiRGl~~l~iL~~Le~~~g~------------------------------~i~~~FDlIaGTStGgIiA~~La 591 (1336)
.|+|-|||.|++|+.||+++|-+.... .....||+|||||+|||+|++|+
T Consensus 5 alVl~GG~slA~y~~GV~~ei~~l~~~~~~~~~~~~~~~~~~~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA 84 (739)
T TIGR03607 5 ALVMYGGVSLAVYMHGVTKEINRLVRASRAYHGYPDEASAGTEAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVLLA 84 (739)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHHhhhhcccccccccccccchhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHHHH
Confidence 489999999999999999999763321 22467999999999999999998
Q ss_pred c---ccCCHHHHHHHHHHhcc--ccccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCC
Q 000712 592 V---KLMTLDQCEEIYKNLGK--LVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADED 666 (1336)
Q Consensus 592 ~---~~~s~~e~~~~y~~l~~--~IF~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~ 666 (1336)
. .+.+++++.++|.+... +.+.... ..|. + ..-..+.|+++.++++|++.+....
T Consensus 85 ~~~~~g~~~~~L~~~W~~~~d~~~lLd~~~------~~~~-------------~-~~~~~sLl~G~~l~~~L~~~L~~~~ 144 (739)
T TIGR03607 85 YALAYGADLDPLRDLWLELADIDALLRPDA------KAWP-------------R-LRRPGSLLDGEYFLPLLLDALAAMV 144 (739)
T ss_pred cccccCCCHHHHHHHHHhcccHHhhcChhh------hccc-------------c-ccCCccccccHHHHHHHHHHHHHhC
Confidence 6 35799999999887653 1111100 0000 0 0011345778889999998886442
Q ss_pred --cchhhhhhhcC--CCeEEEEEEeeccCCCcEEEee-cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccC
Q 000712 667 --GDLLIESSVKN--IPKVFTVSTLVNVMPAQPFIFR-NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIG 741 (1336)
Q Consensus 667 --g~~~~~~~~~~--~~kv~vvsT~~d~~~~~p~lFr-ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 741 (1336)
++..+.+.... .-.++|++| |+ .++...+. ++...-...+... -..+.-+...+ .....+..
T Consensus 145 ~~~~~~~~~lp~~~~~~dL~VTaT--Dl-~G~~~~l~dd~~~~~~e~~hr~------~f~F~~~~~~~----~~~~d~~~ 211 (739)
T TIGR03607 145 RAGPAGPSLLPTGTRPLDLFVTAT--DL-RGRSTRLFDDDGTVVEEREHRG------VFRFTEAGRAG----GRLSDFDA 211 (739)
T ss_pred CCCCCCccccccCCCCccEEEEEE--cC-CCcEEEeecCCCcccccccccc------eeeeecccCCC----CCCccccc
Confidence 11123332221 235666666 66 55554443 2221000000000 00000000000 00011111
Q ss_pred CCcccHHHHHHHhcCCCCCCcceee-----------------------------------CCcccccCcccCCchHHHHH
Q 000712 742 SCKHQVWQAIRASSAAPYYLDDFSD-----------------------------------DVFRWQDGAIVANNPTIFAI 786 (1336)
Q Consensus 742 ~~~~~lwdA~RASSAAP~yF~p~~i-----------------------------------~~~~~vDGGl~aNNPt~~Ai 786 (1336)
.+...|..|+||||+.|++|+|+++ ....|+|||+..|-|...++
T Consensus 212 ~~~~~lA~AaRaSaSfP~aF~Pv~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDGGvldN~Pl~pal 291 (739)
T TIGR03607 212 ANAPRLAFAARATASFPGAFPPSRLAEIDDVLARRFLPWGGRDAFLHPDFPDYAELGTTPRPRYVVDGGVLDNRPFAPAL 291 (739)
T ss_pred cccHHHHHHHHHhcCCCcccCceehhhhhHHHHhccCCCCccccccccccccccccCCCccceEEeecccccCcchHHHH
Confidence 2247899999999999999999943 12469999999999999999
Q ss_pred HHHHHh
Q 000712 787 REAQLL 792 (1336)
Q Consensus 787 ~EA~~l 792 (1336)
.+....
T Consensus 292 ~~i~~~ 297 (739)
T TIGR03607 292 EAIRAR 297 (739)
T ss_pred HHHHhc
Confidence 975543
No 60
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=7e-14 Score=163.10 Aligned_cols=209 Identities=21% Similarity=0.151 Sum_probs=128.4
Q ss_pred hhCCCCCCcEEEeeCCCCCCC----CcccccCCCCcCEEeCCCCCCCC--C---CCCccccCCCCCcEEEcCCCCCC-cc
Q 000712 120 VVKRREPLRAVVLTKGVGSGH----LSDGIGVLTRLMRSDLSTSGPGN--N---MGSGFCDHWKTVTAVSLCGLGLS-AL 189 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~--~---~~~~~~~~L~~L~~L~Ls~N~L~-~l 189 (1336)
.+..+.+|+.|+++++.++.. ++..+..+++|+.|+++++.+.. . .....+..+++|+.|+|++|.+. ..
T Consensus 18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 455566688888888876532 34455566778888887775431 1 11223445678888888888776 23
Q ss_pred ccccCCC---CCCcEEEcCCCCCC-----CCccccCCC-CCCcEEEccCCcCc-----cccccccCCCCCCEEEeccccc
Q 000712 190 PVDLTRL---PVLEKLYLDNNKLS-----TLPPELGAM-KNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRL 255 (1336)
Q Consensus 190 p~~l~~L---~~L~~L~Ls~N~L~-----~lp~~l~~L-~~L~~L~Ls~N~L~-----~lp~~l~~L~~L~~L~Ls~N~l 255 (1336)
+..+..+ ++|++|++++|.++ .+...+..+ ++|+.|+|++|.++ .++..+..+.+|++|+|++|.+
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 3333333 34888888888776 223345555 77888888888777 3444566667788888888877
Q ss_pred cCCc-----cccCCCCCCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCCC--cccccccccccCCCCCeec
Q 000712 256 VRPL-----LDFRAMAELKILRLFGNPLEFL-----P-EILPLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENNSYFG 322 (1336)
Q Consensus 256 ~~~~-----~~l~~L~~L~~L~Ls~N~L~~l-----p-~l~~l~~L~~L~Ls~N~l~~~--~~L~~L~~~l~L~~L~~L~ 322 (1336)
++.. ..+..+++|+.|+|++|.++.. . .+..+++|++|++++|.+++. ..+...- ......|+.++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~-~~~~~~L~~L~ 256 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL-LSPNISLLTLS 256 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH-hccCCCceEEE
Confidence 6421 2345556788888888877621 1 345667788888888877651 1111100 00135677777
Q ss_pred cCCCCCc
Q 000712 323 ASRHKLS 329 (1336)
Q Consensus 323 ls~N~L~ 329 (1336)
+++|.++
T Consensus 257 l~~n~i~ 263 (319)
T cd00116 257 LSCNDIT 263 (319)
T ss_pred ccCCCCC
Confidence 7777665
No 61
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.35 E-value=6.1e-14 Score=158.29 Aligned_cols=130 Identities=19% Similarity=0.261 Sum_probs=114.3
Q ss_pred CCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCC-CCCCccccc-cCCCCCCcEE
Q 000712 125 EPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCG-LGLSALPVD-LTRLPVLEKL 202 (1336)
Q Consensus 125 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~L~~lp~~-l~~L~~L~~L 202 (1336)
+.-..|+|..|.|+.+.+.+|+.+++|+.|||++|. +..+.+..|.++++|..|-+.+ |+|+.+|+. |.+|..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456789999999999888999999999999999995 6677778888999988887766 999999964 7789999999
Q ss_pred EcCCCCCCCCc-cccCCCCCCcEEEccCCcCccccc-cccCCCCCCEEEeccccc
Q 000712 203 YLDNNKLSTLP-PELGAMKNLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRL 255 (1336)
Q Consensus 203 ~Ls~N~L~~lp-~~l~~L~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~l 255 (1336)
.+.-|++..++ ..|..|++|..|.|..|.+..++. .+..+.+++.+.+..|.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence 99999999544 578999999999999999998887 788899999999998873
No 62
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=99.34 E-value=1.1e-11 Score=144.47 Aligned_cols=207 Identities=17% Similarity=0.329 Sum_probs=149.4
Q ss_pred hccchhhhHhhcCCCCCCCCceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHH
Q 000712 520 LGENESLRRAIRGRQVPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQ 599 (1336)
Q Consensus 520 Lgen~~lRr~i~~~~~~~~~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e 599 (1336)
|+.-+..|..+ |-..|.|.|||.-|++|+|||+.|-++- + ...+|+|+|+|||+|..++.. +-+|
T Consensus 162 ~~ff~~~r~~~--------GrTAL~LsGG~tFGlfH~GVlrtL~e~d---L--lP~IIsGsS~GaivAsl~~v~--~~eE 226 (543)
T KOG2214|consen 162 LGFFQRTRHNF--------GRTALILSGGATFGLFHIGVLRTLLEQD---L--LPNIISGSSAGAIVASLVGVR--SNEE 226 (543)
T ss_pred HHHHHHHHHhh--------CceEEEecCCchhhhhHHHHHHHHHHcc---c--cchhhcCCchhHHHHHHHhhc--chHH
Confidence 34444555554 3678999999999999999999997651 1 246899999999999999875 7888
Q ss_pred HHHHHHHhc---cccccCCCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhc
Q 000712 600 CEEIYKNLG---KLVFAEPFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVK 676 (1336)
Q Consensus 600 ~~~~y~~l~---~~IF~~~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~ 676 (1336)
+..++...- -.||.... ..|...+.+.+ .+|..+|-..+...+++.. |++++.++..
T Consensus 227 l~~Ll~~~~~~~~~if~dd~------~n~~~~ikr~~----------~~G~~~Di~~l~~~~~~~~----~~lTFqEAY~ 286 (543)
T KOG2214|consen 227 LKQLLTNFLHSLFNIFQDDL------GNLLTIIKRYF----------TQGALFDISHLACVMKKRL----GNLTFQEAYD 286 (543)
T ss_pred HHHHhccchHhhhhhhcCcc------hhHHHHHHHHH----------hcchHHHHHHHHHHHHHHh----cchhHHHHHH
Confidence 888887643 23455432 24555555554 3578899999999999998 6888999988
Q ss_pred CCCeEEEEEEeeccCCCcEEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcC
Q 000712 677 NIPKVFTVSTLVNVMPAQPFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSA 756 (1336)
Q Consensus 677 ~~~kv~vvsT~~d~~~~~p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSA 756 (1336)
...|++-++.......+.|.+.....+| ++-||-|+.||||
T Consensus 287 rTGrIlNItV~p~s~~e~P~lLNylTaP---------------------------------------nVLIWSAV~aScs 327 (543)
T KOG2214|consen 287 RTGRILNIVVPPSSKSEPPRLLNYLTAP---------------------------------------NVLIWSAVCASCS 327 (543)
T ss_pred hhCceEEEEECccccCCChhHhhccCCC---------------------------------------ceehhHHHHHhcc
Confidence 8888776665444455566665544322 7889999999999
Q ss_pred CCCCCcceee----------------CCcccccCcccCCchHHHHHHHHHHhCCCCCCCEEEEeCC
Q 000712 757 APYYLDDFSD----------------DVFRWQDGAIVANNPTIFAIREAQLLWPDTRIDCLVSIGC 806 (1336)
Q Consensus 757 AP~yF~p~~i----------------~~~~~vDGGl~aNNPt~~Ai~EA~~l~p~~~i~~VVSIGT 806 (1336)
.|++|++-.. ..-.|.||.+...+|... .+.+|.-.. .|||--.
T Consensus 328 ~pgif~~~~Ll~Kd~t~ei~p~~~~~~~~r~~dgsl~~d~P~sr----L~ElFNVnh--fIvsQ~n 387 (543)
T KOG2214|consen 328 VPGIFESTPLLAKDLTNEIEPFIVTFSEPRFMDGSLDNDLPYSR----LKELFNVNH--FIVSQAN 387 (543)
T ss_pred cccccCccHHHHhhccCcEeeccCCccchhhccCcccccCcHHH----HHHHhcccc--EEEecCC
Confidence 9999986311 234799999999999865 566663222 3555443
No 63
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.34 E-value=1.1e-13 Score=162.11 Aligned_cols=176 Identities=24% Similarity=0.269 Sum_probs=149.5
Q ss_pred CCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEEE
Q 000712 124 REPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLY 203 (1336)
Q Consensus 124 l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 203 (1336)
+..-...||+.|++.. +|..+..+..|+.|.|..|. +.. .+..+.++..|++|||+.|+++.+|..++.|+ |+.|.
T Consensus 74 ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~-~r~-ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNC-IRT-IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLI 149 (722)
T ss_pred ccchhhhhcccccccc-CchHHHHHHHHHHHHHHhcc-cee-cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEE
Confidence 4445678889998765 78888888889999998884 333 34444589999999999999999998887765 89999
Q ss_pred cCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC-
Q 000712 204 LDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP- 282 (1336)
Q Consensus 204 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp- 282 (1336)
+++|+++.+|..++.+.+|..|+.+.|.|..+|..++.+.+|+.|++..|++..+++.+..| .|..||++.|+|..+|
T Consensus 150 ~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 150 VSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred EecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence 99999999999999889999999999999999999999999999999999999988887744 5889999999999888
Q ss_pred CCCCCCCCCEEEccCCCCCCCc
Q 000712 283 EILPLLKLRHLSLANIRIVADE 304 (1336)
Q Consensus 283 ~l~~l~~L~~L~Ls~N~l~~~~ 304 (1336)
.|.+|..|++|-|.+|.+..++
T Consensus 229 ~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 229 DFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred hhhhhhhheeeeeccCCCCCCh
Confidence 7889999999999999998864
No 64
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=3e-13 Score=157.72 Aligned_cols=210 Identities=26% Similarity=0.313 Sum_probs=155.9
Q ss_pred hhhhCCCCCCcEEEeeCCCCCC------CCcccccCCCCcCEEeCCCCCCCCCCCCccccCC---CCCcEEEcCCCCCC-
Q 000712 118 MRVVKRREPLRAVVLTKGVGSG------HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHW---KTVTAVSLCGLGLS- 187 (1336)
Q Consensus 118 ~~~l~~l~~L~~L~Ls~N~l~~------~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L---~~L~~L~Ls~N~L~- 187 (1336)
...+...++|+.|+++++.+.+ .++..+..+++|+.|+|++|.+.... ...+..+ ++|++|++++|+++
T Consensus 44 ~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~~~~L~~L~ls~~~~~~ 122 (319)
T cd00116 44 ASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG-CGVLESLLRSSSLQELKLNNNGLGD 122 (319)
T ss_pred HHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH-HHHHHHHhccCcccEEEeeCCccch
Confidence 3456778889999999998762 23456778899999999999755432 2233334 44999999999987
Q ss_pred ----ccccccCCC-CCCcEEEcCCCCCC-----CCccccCCCCCCcEEEccCCcCc-----cccccccCCCCCCEEEecc
Q 000712 188 ----ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPELGAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEH 252 (1336)
Q Consensus 188 ----~lp~~l~~L-~~L~~L~Ls~N~L~-----~lp~~l~~L~~L~~L~Ls~N~L~-----~lp~~l~~L~~L~~L~Ls~ 252 (1336)
.+...+..+ ++|+.|+|++|.++ .++..+..+++|++|+|++|.++ .++..+..+++|++|+|++
T Consensus 123 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 202 (319)
T cd00116 123 RGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNN 202 (319)
T ss_pred HHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccC
Confidence 334456667 89999999999998 34456677889999999999988 3455666778999999999
Q ss_pred ccccCCc-----cccCCCCCCcEEEccCCCCCC--CCCCC-----CCCCCCEEEccCCCCCCC--cccccccccccCCCC
Q 000712 253 NRLVRPL-----LDFRAMAELKILRLFGNPLEF--LPEIL-----PLLKLRHLSLANIRIVAD--ENLRSVNVQIEMENN 318 (1336)
Q Consensus 253 N~l~~~~-----~~l~~L~~L~~L~Ls~N~L~~--lp~l~-----~l~~L~~L~Ls~N~l~~~--~~L~~L~~~l~L~~L 318 (1336)
|.+++.. ..+..+++|++|++++|.++. +..+. ..+.|++|++++|.|+.. ..+.. ....++++
T Consensus 203 n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~--~~~~~~~L 280 (319)
T cd00116 203 NGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE--VLAEKESL 280 (319)
T ss_pred CccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH--HHhcCCCc
Confidence 9987543 236778999999999999883 11211 357999999999999842 11111 11235789
Q ss_pred CeeccCCCCCcc
Q 000712 319 SYFGASRHKLSA 330 (1336)
Q Consensus 319 ~~L~ls~N~L~~ 330 (1336)
+++++++|.++.
T Consensus 281 ~~l~l~~N~l~~ 292 (319)
T cd00116 281 LELDLRGNKFGE 292 (319)
T ss_pred cEEECCCCCCcH
Confidence 999999998885
No 65
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=99.30 E-value=1.7e-12 Score=156.56 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=156.5
Q ss_pred CCCCCceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccC
Q 000712 535 VPKQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAE 614 (1336)
Q Consensus 535 ~~~~~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~ 614 (1336)
.++....++..||||++ ...+|-.+|++.+...-.+||++.|||+||++++.+... .+.+.+..+|..+...+|..
T Consensus 289 ~~~~~~~lv~~~G~G~~---~~q~l~~~e~~~~~a~~~~f~w~~gtstg~~~~~~i~~~-~s~d~v~~~y~~~k~~~F~~ 364 (503)
T KOG0513|consen 289 RLRVDDNLVLSDGGGIP---IIQVLYWIEKRCGTAAWGYFDWFNGTSTGSTIMADIALD-GSSDEVDRMYLQMKDVVFDG 364 (503)
T ss_pred cccccceEEEecCCCCh---hHHHHHhHHHhcccccccccccccccCcCceeehhhhhc-ccHHHHHHHHHHHhHHhhhc
Confidence 33445678999999999 889999999998888889999999999999999999766 69999999999988888864
Q ss_pred CCCCchhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCc
Q 000712 615 PFPKDNEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQ 694 (1336)
Q Consensus 615 ~~~~~~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~ 694 (1336)
- .+.|+...++.+++..++. .... -.+.++..+.....+..+.+
T Consensus 365 ~------------------------------r~~~~~~~Ie~~~~~~~G~----~~~~--di~~~~~nl~~~~~~~~~~~ 408 (503)
T KOG0513|consen 365 L------------------------------RSEYNYVRIECAIDRLFGD----APSM--DIDGIRLNLTGLLVDITGEE 408 (503)
T ss_pred c------------------------------cCCCCccchhhhhhcccCc----cccc--cCCcchhhhhhhhccccHHH
Confidence 2 3456777888888877753 1111 12334445555555667778
Q ss_pred EEEeecCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCcceeeCCcccccC
Q 000712 695 PFIFRNYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLDDFSDDVFRWQDG 774 (1336)
Q Consensus 695 p~lFrny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~p~~i~~~~~vDG 774 (1336)
...+|||..+.+.+.+.. + ... ...+...-+...+|++.|.|+++|.+|++. +..|+||
T Consensus 409 l~~~rn~~~~i~~~~~~~---~--------~~s-------nde~~~~~~~~l~we~~rrss~a~~~f~~~---~~~~~d~ 467 (503)
T KOG0513|consen 409 LLMARNYRHNINGGKPRS---E--------EVS-------NDEALEEPAMQLVWEAKRRSSRAPPTFPPS---EGKFIDG 467 (503)
T ss_pred HHHhhccccccccccccc---c--------ccc-------cchhhhhHHHHHHHHHHHhccCCCCccccc---ccceeec
Confidence 889999998765432000 0 000 011112234568999999999999999875 5779999
Q ss_pred cccCCchHHHHHHHHHHhC----CCCCCCEEEEeCC
Q 000712 775 AIVANNPTIFAIREAQLLW----PDTRIDCLVSIGC 806 (1336)
Q Consensus 775 Gl~aNNPt~~Ai~EA~~l~----p~~~i~~VVSIGT 806 (1336)
|..+|||....+++.+.+. +-....|+||+||
T Consensus 468 ~~~~~n~~ld~~t~~~~~~~~~~~~~~~~~~~s~gt 503 (503)
T KOG0513|consen 468 GLIANNPALDLMTDIHTYNKDLNKRNTMTIVVSAGT 503 (503)
T ss_pred CccCCCcchhhhHHHHHHHhhhhhhcccceEEeccC
Confidence 9999999999999997654 2345669999998
No 66
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.25 E-value=2.2e-13 Score=159.72 Aligned_cols=109 Identities=29% Similarity=0.365 Sum_probs=52.2
Q ss_pred CCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEec
Q 000712 172 HWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLE 251 (1336)
Q Consensus 172 ~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 251 (1336)
.+..|+.|.|+.|.|..+|..+.++..|.+|||+.|+++.+|..++.|+ |+.|-+++|+++.+|..++.+..|..|+.+
T Consensus 96 ~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhh
Confidence 3444444444444444444444444444444444444444444444444 444444444444444444444444444444
Q ss_pred cccccCCccccCCCCCCcEEEccCCCCCCC
Q 000712 252 HNRLVRPLLDFRAMAELKILRLFGNPLEFL 281 (1336)
Q Consensus 252 ~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~l 281 (1336)
.|.+..+++.++.+.+|+.|++..|++..+
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~l 204 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDL 204 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhC
Confidence 444444444444444444444444444433
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=2.3e-12 Score=140.64 Aligned_cols=207 Identities=20% Similarity=0.176 Sum_probs=143.9
Q ss_pred hhCCCCCCcEEEeeCC--------CCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCc---
Q 000712 120 VVKRREPLRAVVLTKG--------VGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA--- 188 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N--------~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~--- 188 (1336)
.+..+..|..|.++.. -+...+|-.+.-+++|+.+.++.+. ..-+......-+.|+++...+..++.
T Consensus 177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~~~~~~ 254 (490)
T KOG1259|consen 177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTIQDVPS 254 (490)
T ss_pred HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeeccccccccc
Confidence 3455667778877653 2223344455566788888888874 22122222234667777776665441
Q ss_pred -cc--------------------cccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCE
Q 000712 189 -LP--------------------VDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVE 247 (1336)
Q Consensus 189 -lp--------------------~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 247 (1336)
+| ..+..+..|++|||++|.|+.+.+++.-+++++.|++|+|.|..+- .+..+++|+.
T Consensus 255 l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~ 333 (490)
T KOG1259|consen 255 LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQL 333 (490)
T ss_pred ccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceE
Confidence 11 1122345788889999988888888888888999999999888776 4888888999
Q ss_pred EEeccccccCCccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCC
Q 000712 248 LSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHK 327 (1336)
Q Consensus 248 L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~ 327 (1336)
||||+|.++.+...-.++-+++.|.|++|.|..+..+..+-+|..||+++|+|..+..... .-.++.|+.+.+.+|.
T Consensus 334 LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~---IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 334 LDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNH---IGNLPCLETLRLTGNP 410 (490)
T ss_pred eecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcc---cccccHHHHHhhcCCC
Confidence 9999988876654445667888888999988888888888888899999998887554443 2246777778888887
Q ss_pred Ccccc
Q 000712 328 LSAFF 332 (1336)
Q Consensus 328 L~~~~ 332 (1336)
+.+++
T Consensus 411 l~~~v 415 (490)
T KOG1259|consen 411 LAGSV 415 (490)
T ss_pred ccccc
Confidence 77643
No 68
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.2e-12 Score=146.51 Aligned_cols=206 Identities=19% Similarity=0.164 Sum_probs=125.2
Q ss_pred hCCCCCCcEEEeeCCCCCCCCc-ccccCCCCcCEEeCCCCCCCCCC--CCccccCCCCCcEEEcCCCCCCccccc--cCC
Q 000712 121 VKRREPLRAVVLTKGVGSGHLS-DGIGVLTRLMRSDLSTSGPGNNM--GSGFCDHWKTVTAVSLCGLGLSALPVD--LTR 195 (1336)
Q Consensus 121 l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~--~~~~~~~L~~L~~L~Ls~N~L~~lp~~--l~~ 195 (1336)
-++++.|+.+.|.++.+..... .....|++++.|||+.| ++..+ ...++..|++|+.|+|+.|++...-.+ -..
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3456667777777765543211 24556777777777777 33322 223456677777777777776632221 124
Q ss_pred CCCCcEEEcCCCCCC--CCccccCCCCCCcEEEccCCc-CccccccccCCCCCCEEEeccccccCCc--cccCCCCCCcE
Q 000712 196 LPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNM-LVCVPVELRECVGLVELSLEHNRLVRPL--LDFRAMAELKI 270 (1336)
Q Consensus 196 L~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~-L~~lp~~l~~L~~L~~L~Ls~N~l~~~~--~~l~~L~~L~~ 270 (1336)
+++|+.|.|+.|.|+ .+...+..+++|+.|+|..|. +..-......+..|++|+|++|.+.... .....++.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 567777777777777 343444566777777777774 2211122334567777777777776655 44677777777
Q ss_pred EEccCCCCCCCC--C------CCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCcc
Q 000712 271 LRLFGNPLEFLP--E------ILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 271 L~Ls~N~L~~lp--~------l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
|+++.|.|.++. . ...+++|+.|++..|+|.+.+++.++. .+.+++.+....|.|+.
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~---~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR---TLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhh---ccchhhhhhcccccccc
Confidence 777777776332 2 245677777888877777665555432 25556666655666553
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=4.3e-12 Score=138.50 Aligned_cols=135 Identities=24% Similarity=0.313 Sum_probs=120.1
Q ss_pred cCCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEe
Q 000712 171 DHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSL 250 (1336)
Q Consensus 171 ~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 250 (1336)
..+..|++||||+|.|+.+.+++.-++.++.|++++|.|..+.. +..|++|+.||||+|.++++-..-.++-|++.|+|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 35678999999999999999999889999999999999998874 88999999999999999988766678899999999
Q ss_pred ccccccCCccccCCCCCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCCcccc
Q 000712 251 EHNRLVRPLLDFRAMAELKILRLFGNPLEFLP---EILPLLKLRHLSLANIRIVADENLR 307 (1336)
Q Consensus 251 s~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp---~l~~l~~L~~L~Ls~N~l~~~~~L~ 307 (1336)
+.|.|..+ ..++++-+|..||+++|+|..+. .+++++.|++|.|.+|.|.......
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 99998765 46888899999999999998555 7889999999999999999865444
No 70
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=2.6e-11 Score=146.34 Aligned_cols=196 Identities=28% Similarity=0.323 Sum_probs=148.4
Q ss_pred EEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCC-CCcEEEcCCCCCCccccccCCCCCCcEEEcCCC
Q 000712 129 AVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWK-TVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNN 207 (1336)
Q Consensus 129 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 207 (1336)
.|++..|.+...+ ..+..++.++.|++.+|.+ ..+++.. ..+. +|+.|++++|++..+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i-~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNI-TDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCccc-ccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 5777777664322 3445567888888888863 3333322 2453 888888888888888777888888888888888
Q ss_pred CCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC-CCCC
Q 000712 208 KLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILP 286 (1336)
Q Consensus 208 ~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp-~l~~ 286 (1336)
+++.+|.....+++|+.|++++|++..+|..+..+..|++|.+++|.+...+..+.++.++..|.+.+|++..++ .+..
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc
Confidence 888888766678888888888888888887766667788888888876666666788888888888888887644 5667
Q ss_pred CCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCccccc
Q 000712 287 LLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLSAFFS 333 (1336)
Q Consensus 287 l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~ 333 (1336)
+++|+.|++++|.++.+..+.. +.+++.+++++|.+...++
T Consensus 254 l~~l~~L~~s~n~i~~i~~~~~------~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 254 LSNLETLDLSNNQISSISSLGS------LTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccceeccccccccccccccc------cCccCEEeccCccccccch
Confidence 7788888888888888766554 6788888888888876654
No 71
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=2.7e-11 Score=146.32 Aligned_cols=182 Identities=25% Similarity=0.292 Sum_probs=159.0
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCcccccCCC-CcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLT-RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLP 197 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~ 197 (1336)
..+..++.++.|++.+|.++. ++.....+. +|+.|++++|++. .++ ..++.+++|+.|++++|+++.+|.....++
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~ 186 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLS 186 (394)
T ss_pred hhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhh-hhhhccccccccccCCchhhhhhhhhhhhh
Confidence 345556889999999999887 556666674 9999999999733 222 344689999999999999999998777899
Q ss_pred CCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCC
Q 000712 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNP 277 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~ 277 (1336)
+|+.|++++|+++.+|..+..+..|++|.+++|.+..++..+.++.++..|.+.+|++...+..+..+++|+.|++++|.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 99999999999999998777777899999999988888888999999999999999998876678899999999999999
Q ss_pred CCCCCCCCCCCCCCEEEccCCCCCCC
Q 000712 278 LEFLPEILPLLKLRHLSLANIRIVAD 303 (1336)
Q Consensus 278 L~~lp~l~~l~~L~~L~Ls~N~l~~~ 303 (1336)
++.++.+..+.+|+.|++++|.+...
T Consensus 267 i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 267 ISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccccccCccCEEeccCcccccc
Confidence 99988899999999999999999874
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=6.6e-12 Score=144.00 Aligned_cols=184 Identities=21% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCc---cccccCCCCCCcEEEcCCCCCCCCcccc--CCCCC
Q 000712 147 VLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSA---LPVDLTRLPVLEKLYLDNNKLSTLPPEL--GAMKN 221 (1336)
Q Consensus 147 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~---lp~~l~~L~~L~~L~Ls~N~L~~lp~~l--~~L~~ 221 (1336)
++.+|+...|.++.............|++++.|||++|-+.. +-.-...|++|+.|+|+.|++...-++. ..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 445555555555542111111233455555566666555442 2222334555555666655555221111 23455
Q ss_pred CcEEEccCCcCc--cccccccCCCCCCEEEeccccccCCc-cccCCCCCCcEEEccCCCCCCCC---CCCCCCCCCEEEc
Q 000712 222 LKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPL-LDFRAMAELKILRLFGNPLEFLP---EILPLLKLRHLSL 295 (1336)
Q Consensus 222 L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~l~~~~-~~l~~L~~L~~L~Ls~N~L~~lp---~l~~l~~L~~L~L 295 (1336)
|+.|.|+.|.|+ .+-..+..+++|+.|+|..|...... ....-+..|+.|+|++|++...+ ....++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 555555555555 33333344555555565555311111 12333455555566555554333 3445555555555
Q ss_pred cCCCCCCC--cccccccccccCCCCCeeccCCCCCcc
Q 000712 296 ANIRIVAD--ENLRSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 296 s~N~l~~~--~~L~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
+.|.|.++ ++...+.....+++|++|++..|++..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~ 315 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD 315 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence 55555542 122111122234555555555555543
No 73
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=3.7e-11 Score=127.46 Aligned_cols=106 Identities=28% Similarity=0.392 Sum_probs=28.8
Q ss_pred CCCCCcEEEcCCCCCCccccccC-CCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccc-cCCCCCCEEE
Q 000712 172 HWKTVTAVSLCGLGLSALPVDLT-RLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVEL-RECVGLVELS 249 (1336)
Q Consensus 172 ~L~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l-~~L~~L~~L~ 249 (1336)
+..++++|+|++|+|+.+. .++ .+.+|+.|+|++|.|+.+. .+..+++|++|++++|+|+.+...+ ..+++|++|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3344566666666666553 343 3556666666666666554 3555666666666666666554434 2456666666
Q ss_pred eccccccCCc--cccCCCCCCcEEEccCCCCC
Q 000712 250 LEHNRLVRPL--LDFRAMAELKILRLFGNPLE 279 (1336)
Q Consensus 250 Ls~N~l~~~~--~~l~~L~~L~~L~Ls~N~L~ 279 (1336)
|++|+|..+. ..+..+++|+.|+|.+|+++
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666665443 23455555555555555555
No 74
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=6.4e-11 Score=125.63 Aligned_cols=140 Identities=25% Similarity=0.299 Sum_probs=54.5
Q ss_pred cCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccC-CCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCc
Q 000712 181 LCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPL 259 (1336)
Q Consensus 181 Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~ 259 (1336)
|..+.|..++ .+.+..++++|+|++|.|+.+. .+. .+.+|+.|+|++|.|+.+. .+..+++|++|++++|+|+.+.
T Consensus 4 lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 4556666665 3456668999999999999875 465 6889999999999999886 7888999999999999999876
Q ss_pred ccc-CCCCCCcEEEccCCCCCCCC---CCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccC
Q 000712 260 LDF-RAMAELKILRLFGNPLEFLP---EILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGAS 324 (1336)
Q Consensus 260 ~~l-~~L~~L~~L~Ls~N~L~~lp---~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls 324 (1336)
+.+ ..+++|+.|+|++|+|..+. .+..+++|+.|+|.+|.++..+.... .+...+++|+.||-.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~-~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRL-FVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHH-HHHHH-TT-SEETTE
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHH-HHHHHcChhheeCCE
Confidence 555 46899999999999998554 56788999999999999987543332 223357888888754
No 75
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=8.9e-11 Score=131.94 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=156.3
Q ss_pred CCCCCceEEeccCCCCCCccccccccccchhhhCCCCCCcEEEeeCCC---CCCCCc-------ccccCCCCcCEEeCCC
Q 000712 89 PVPEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGV---GSGHLS-------DGIGVLTRLMRSDLST 158 (1336)
Q Consensus 89 p~~~~~~~l~l~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~Ls~N~---l~~~~p-------~~l~~L~~L~~L~Ls~ 158 (1336)
........+.++.... +.+..+.-.+.+.+.++|+..++++-- +...+| ..+-.+++|++||||.
T Consensus 27 ~~~~s~~~l~lsgnt~-----G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTF-----GTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred cccCceEEEeccCCch-----hHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 3445556777777553 556666677788888999999988752 222233 3445677899999999
Q ss_pred CCCCCCCCCc---cccCCCCCcEEEcCCCCCCcc--------------ccccCCCCCCcEEEcCCCCCCCC-----cccc
Q 000712 159 SGPGNNMGSG---FCDHWKTVTAVSLCGLGLSAL--------------PVDLTRLPVLEKLYLDNNKLSTL-----PPEL 216 (1336)
Q Consensus 159 N~l~~~~~~~---~~~~L~~L~~L~Ls~N~L~~l--------------p~~l~~L~~L~~L~Ls~N~L~~l-----p~~l 216 (1336)
|.+....++. .+..+..|+.|.|.+|.|... .+....-++|+++...+|++..- ...+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 9765554433 456678899999999988721 12234557788888888888733 3456
Q ss_pred CCCCCCcEEEccCCcCc-----cccccccCCCCCCEEEeccccccCCc-----cccCCCCCCcEEEccCCCCCCC-----
Q 000712 217 GAMKNLKVLIVDNNMLV-----CVPVELRECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEFL----- 281 (1336)
Q Consensus 217 ~~L~~L~~L~Ls~N~L~-----~lp~~l~~L~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~~L~Ls~N~L~~l----- 281 (1336)
...+.|+.+.++.|.|. .+-..+..+++|+.|||.+|-++... ..++.+++|+.|++++|.+..=
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 67788888888888876 23446677888888888888876433 2467778888888888887611
Q ss_pred -CCC-CCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCc
Q 000712 282 -PEI-LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLS 329 (1336)
Q Consensus 282 -p~l-~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~ 329 (1336)
..+ ...++|+.|.|.+|.|+....+.-....-..+.|..|+++.|.+.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 112 236788888888888875321111001112567777778888773
No 76
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=1.6e-10 Score=129.84 Aligned_cols=237 Identities=16% Similarity=0.157 Sum_probs=167.4
Q ss_pred hhhhCCCCCCcEEEeeCCCCCCC----CcccccCCCCcCEEeCCCCCCCCCCCC----------ccccCCCCCcEEEcCC
Q 000712 118 MRVVKRREPLRAVVLTKGVGSGH----LSDGIGVLTRLMRSDLSTSGPGNNMGS----------GFCDHWKTVTAVSLCG 183 (1336)
Q Consensus 118 ~~~l~~l~~L~~L~Ls~N~l~~~----~p~~l~~L~~L~~L~Ls~N~l~~~~~~----------~~~~~L~~L~~L~Ls~ 183 (1336)
...+..+..++.|+|++|.+... +...+.+.++|+..++++- +++.... ..+..+++|++||||.
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 34677788999999999988632 3456677889999999876 4443321 1233567999999999
Q ss_pred CCCC-----ccccccCCCCCCcEEEcCCCCCCCC--------------ccccCCCCCCcEEEccCCcCcc-----ccccc
Q 000712 184 LGLS-----ALPVDLTRLPVLEKLYLDNNKLSTL--------------PPELGAMKNLKVLIVDNNMLVC-----VPVEL 239 (1336)
Q Consensus 184 N~L~-----~lp~~l~~L~~L~~L~Ls~N~L~~l--------------p~~l~~L~~L~~L~Ls~N~L~~-----lp~~l 239 (1336)
|-+. .+-.-+.++.+|++|.|.+|.+... ...+..-++|+++...+|++.. +...+
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 9987 2223466789999999999998722 1223456789999999999883 33466
Q ss_pred cCCCCCCEEEeccccccCCc-----cccCCCCCCcEEEccCCCCCC-----CC-CCCCCCCCCEEEccCCCCCCCccccc
Q 000712 240 RECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLEF-----LP-EILPLLKLRHLSLANIRIVADENLRS 308 (1336)
Q Consensus 240 ~~L~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~~L~Ls~N~L~~-----lp-~l~~l~~L~~L~Ls~N~l~~~~~L~~ 308 (1336)
...+.|+.+.++.|.|.... ..|..+++|+.|||.+|-++. +. .+..+++|+.|++++|.+..-....-
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 77789999999999885322 358889999999999999871 21 46667889999999999886322221
Q ss_pred cccc-ccCCCCCeeccCCCCCccccccccccCCCCchhhHHHHHhhhhcCCCcccccccccccccCcEEEcCCCc
Q 000712 309 VNVQ-IEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASALAKIMQDQENRVVVGKDENAVRQLISMISSDNR 382 (1336)
Q Consensus 309 L~~~-l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L~~lL~Ls~N~l~lp~~l~~L~~L~~L~Ls~N~ 382 (1336)
+..+ -..++|+.+.+.+|.++.-- .+ .+-..+...+.|..|+|++|.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da----------------~~-----------~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDA----------------AL-----------ALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHH----------------HH-----------HHHHHHhcchhhHHhcCCccc
Confidence 1100 02678888888888776310 00 112234457889999999998
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.1e-10 Score=137.97 Aligned_cols=129 Identities=28% Similarity=0.290 Sum_probs=57.6
Q ss_pred CCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEec
Q 000712 172 HWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLE 251 (1336)
Q Consensus 172 ~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 251 (1336)
.+.+|+.|++.+|+|..+...+..+++|++|+|++|.|+.+. .+..++.|+.|++++|.|+.+. .+..+++|+.|+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 444555555555555544333444445555555555554443 2344444444555555444443 33334444444444
Q ss_pred cccccCCccc-cCCCCCCcEEEccCCCCCCCCCCCCCCCCCEEEccCCCCCC
Q 000712 252 HNRLVRPLLD-FRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANIRIVA 302 (1336)
Q Consensus 252 ~N~l~~~~~~-l~~L~~L~~L~Ls~N~L~~lp~l~~l~~L~~L~Ls~N~l~~ 302 (1336)
+|.+..+... +..+.+|+.+++.+|.+..+..+..+..+..+++..|.++.
T Consensus 171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 171 YNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhccccccee
Confidence 4444433221 23444444444444444444433333333344444444443
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=2.2e-10 Score=139.25 Aligned_cols=198 Identities=23% Similarity=0.308 Sum_probs=144.7
Q ss_pred CCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcE
Q 000712 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEK 201 (1336)
Q Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 201 (1336)
..+..++.+++..|.+.. +-..+..+++|+.|++.+|++... . ..+..+++|++|+|++|.|+.+. .+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~-~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-E-NLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-c-cchhhhhcchheecccccccccc-chhhccchhh
Confidence 456677777788887765 234577788888899988863322 2 21457888899999999888774 5677778889
Q ss_pred EEcCCCCCCCCccccCCCCCCcEEEccCCcCcccccc-ccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCC
Q 000712 202 LYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE-LRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEF 280 (1336)
Q Consensus 202 L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~-l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~ 280 (1336)
|++++|.|+.+. .+..+++|+.+++++|.+..+... +..+.+|+.|++.+|.+..+. .+..+..+..+++..|.++.
T Consensus 145 L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 145 LNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred heeccCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccccee
Confidence 999999888776 466688888899999988877643 577888888888888886543 34455566666888888886
Q ss_pred CCCCCCCCC--CCEEEccCCCCCCC-cccccccccccCCCCCeeccCCCCCccc
Q 000712 281 LPEILPLLK--LRHLSLANIRIVAD-ENLRSVNVQIEMENNSYFGASRHKLSAF 331 (1336)
Q Consensus 281 lp~l~~l~~--L~~L~Ls~N~l~~~-~~L~~L~~~l~L~~L~~L~ls~N~L~~~ 331 (1336)
+..+..+.. |+.+++++|++... ..+.. +.++..+++..|++...
T Consensus 223 ~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~------~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 223 LEGLNELVMLHLRELYLSGNRISRSPEGLEN------LKNLPVLDLSSNRISNL 270 (414)
T ss_pred ccCcccchhHHHHHHhcccCccccccccccc------cccccccchhhcccccc
Confidence 666555555 88888888888875 44443 56777777777777653
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.60 E-value=4.7e-10 Score=134.78 Aligned_cols=127 Identities=22% Similarity=0.194 Sum_probs=66.4
Q ss_pred CCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCcc-ccCCCCCCcEEEccCC
Q 000712 198 VLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGN 276 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~-~l~~L~~L~~L~Ls~N 276 (1336)
.|.+.+.++|.|..+..++.-++.|+.|||++|+++..- .+..|+.|++|||++|.+..++. ....+. |+.|+|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 455555555655555555555555666666666655443 45555556666666665555441 222222 555666666
Q ss_pred CCCCCCCCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCCCc
Q 000712 277 PLEFLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHKLS 329 (1336)
Q Consensus 277 ~L~~lp~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~ 329 (1336)
.++.+-.+.++.+|+.|||++|-|.+...+..|. .|..|..|.+.+|.+.
T Consensus 243 ~l~tL~gie~LksL~~LDlsyNll~~hseL~pLw---sLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLW---SLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHH---HHHHHHHHhhcCCccc
Confidence 6655555555556666666666555533333211 1334444555555444
No 80
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.58 E-value=5.4e-08 Score=126.71 Aligned_cols=252 Identities=19% Similarity=0.149 Sum_probs=154.3
Q ss_pred CCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCC-CCCCCCccccCCCCCcEEEcCCCC-CCccccccCCCCCC
Q 000712 122 KRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGP-GNNMGSGFCDHWKTVTAVSLCGLG-LSALPVDLTRLPVL 199 (1336)
Q Consensus 122 ~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~-L~~lp~~l~~L~~L 199 (1336)
......+.+.+-+|.+.. ++... .+++|++|-+..|.. ...+...+|..++.|+.|||++|. +..+|..++.|-+|
T Consensus 520 ~~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred cchhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 334566788888887654 33333 345799999988853 556677778889999999999876 78999999999999
Q ss_pred cEEEcCCCCCCCCccccCCCCCCcEEEccCCcCc-cccccccCCCCCCEEEeccccccCCc---cccCCCCCCcEEEccC
Q 000712 200 EKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPL---LDFRAMAELKILRLFG 275 (1336)
Q Consensus 200 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~---~~l~~L~~L~~L~Ls~ 275 (1336)
++|+|+++.++.+|..+.+|.+|.+||+..+.-. .+|..+..+.+|++|.+..-...... ..+.++.+|+.|....
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999999999999999999999999988744 55555566999999998765422211 2355666666666644
Q ss_pred CCCCCCCCCCCCCCCC----EEEccCCCCCC-CcccccccccccCCCCCeeccCCCCCccccccccccCCCCchhhHHHH
Q 000712 276 NPLEFLPEILPLLKLR----HLSLANIRIVA-DENLRSVNVQIEMENNSYFGASRHKLSAFFSLIFRFSSCHHPLLASAL 350 (1336)
Q Consensus 276 N~L~~lp~l~~l~~L~----~L~Ls~N~l~~-~~~L~~L~~~l~L~~L~~L~ls~N~L~~~~~~l~~Ls~l~~~~l~~~L 350 (1336)
.....+..+..++.|. .+.+.++.... ...+. .+.+++.|.+....+....... ............+
T Consensus 678 ~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~------~l~~L~~L~i~~~~~~e~~~~~--~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 678 SSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLG------SLGNLEELSILDCGISEIVIEW--EESLIVLLCFPNL 749 (889)
T ss_pred chhHhHhhhhhhHHHHHHhHhhhhcccccceeecccc------cccCcceEEEEcCCCchhhccc--ccccchhhhHHHH
Confidence 4432112223333333 23322222111 22222 3667777777776665322100 0000000001111
Q ss_pred HhhhhcCCCcccccccccccccCcEEEcCCCcc
Q 000712 351 AKIMQDQENRVVVGKDENAVRQLISMISSDNRH 383 (1336)
Q Consensus 351 ~~lL~Ls~N~l~lp~~l~~L~~L~~L~Ls~N~~ 383 (1336)
.++....-.....+.+....++|+.|.+..++.
T Consensus 750 ~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~ 782 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRL 782 (889)
T ss_pred HHHHhhccccccccchhhccCcccEEEEecccc
Confidence 111111111124445556678999999998884
No 81
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=9.5e-10 Score=132.20 Aligned_cols=149 Identities=26% Similarity=0.304 Sum_probs=111.6
Q ss_pred CCCCCcEEEcCCCCCCccccccCCC-CCCcEEEcCCCCCCCCc-------cccC---CCCCCcEEEccCCcCcccccccc
Q 000712 172 HWKTVTAVSLCGLGLSALPVDLTRL-PVLEKLYLDNNKLSTLP-------PELG---AMKNLKVLIVDNNMLVCVPVELR 240 (1336)
Q Consensus 172 ~L~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~L~~lp-------~~l~---~L~~L~~L~Ls~N~L~~lp~~l~ 240 (1336)
.+.+|+.|.|.+|.|... ..+..+ ..|++|. ..|.+..+- ..+. ....|...+.+.|.+..+..++.
T Consensus 107 pF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTA-KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhh-hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHH
Confidence 667788888888877753 222222 3455553 334333211 1111 13468888999999998888888
Q ss_pred CCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCCCCC--CCCCCCEEEccCCCCCCCcccccccccccCCCC
Q 000712 241 ECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLPEIL--PLLKLRHLSLANIRIVADENLRSVNVQIEMENN 318 (1336)
Q Consensus 241 ~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~l~--~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L 318 (1336)
-++.|+.|||++|+++... .+..|++|++|||+.|.|+.+|.+. .|. |..|.|++|.++.+..+.+ |.+|
T Consensus 185 ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~------LksL 256 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIEN------LKSL 256 (1096)
T ss_pred HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHh------hhhh
Confidence 8999999999999998875 7889999999999999999888655 444 9999999999998877776 6789
Q ss_pred CeeccCCCCCcc
Q 000712 319 SYFGASRHKLSA 330 (1336)
Q Consensus 319 ~~L~ls~N~L~~ 330 (1336)
..||+++|-|.+
T Consensus 257 ~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 257 YGLDLSYNLLSE 268 (1096)
T ss_pred hccchhHhhhhc
Confidence 999999998775
No 82
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=2.2e-07 Score=118.51 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=91.2
Q ss_pred CcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCC-ccccccCCCCCCcEEEcCCCCCC-CCccccCCCCCCcEEEc
Q 000712 150 RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS-ALPVDLTRLPVLEKLYLDNNKLS-TLPPELGAMKNLKVLIV 227 (1336)
Q Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~L 227 (1336)
.++.|+|++|.+.+.++. .+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+++ .+|..+.+|++|++|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 478899999987666555 4569999999999999998 88888999999999999999999 89999999999999999
Q ss_pred cCCcCc-cccccccCC-CCCCEEEeccccc
Q 000712 228 DNNMLV-CVPVELREC-VGLVELSLEHNRL 255 (1336)
Q Consensus 228 s~N~L~-~lp~~l~~L-~~L~~L~Ls~N~l 255 (1336)
++|+++ .+|..+..+ .++..+++.+|..
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCcc
Confidence 999998 889888653 5678899998864
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.47 E-value=3e-07 Score=117.18 Aligned_cols=104 Identities=23% Similarity=0.373 Sum_probs=80.7
Q ss_pred CCcEEEcCCCCCC-CCccccCCCCCCcEEEccCCcCc-cccccccCCCCCCEEEeccccccCCcc-ccCCCCCCcEEEcc
Q 000712 198 VLEKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV-CVPVELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLF 274 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~~-~l~~L~~L~~L~Ls 274 (1336)
.++.|+|++|.++ .+|..+..|++|+.|+|++|.+. .+|..++.+++|+.|+|++|++++..| .+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3678888888887 77888888888888888888887 788788888888888888888887554 58888888888888
Q ss_pred CCCCC-CCC-CCCC-CCCCCEEEccCCCCC
Q 000712 275 GNPLE-FLP-EILP-LLKLRHLSLANIRIV 301 (1336)
Q Consensus 275 ~N~L~-~lp-~l~~-l~~L~~L~Ls~N~l~ 301 (1336)
+|+++ .+| .+.. +.++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 88887 555 3433 345677888887643
No 84
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.33 E-value=2.8e-07 Score=120.17 Aligned_cols=179 Identities=22% Similarity=0.215 Sum_probs=127.9
Q ss_pred CCCCCCcEEEeeCCC--CCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCC
Q 000712 122 KRREPLRAVVLTKGV--GSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVL 199 (1336)
Q Consensus 122 ~~l~~L~~L~Ls~N~--l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L 199 (1336)
..++.|++|-+..|. +.......|..++.|++|||++|. .....|..+++|-+|++|+|+++.++.+|..+.+|++|
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKL 620 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhh
Confidence 345689999999996 555444568889999999999995 44455566779999999999999999999999999999
Q ss_pred cEEEcCCCCCC-CCccccCCCCCCcEEEccCCcCc---cccccccCCCCCCEEEeccccccCCccccCCCCCCc----EE
Q 000712 200 EKLYLDNNKLS-TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELK----IL 271 (1336)
Q Consensus 200 ~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~----~L 271 (1336)
.+|++..+.-. .+|..+..|.+|++|.+...... ..-..+.++.+|+.|....... .+...+..++.|. .+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l 699 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSL 699 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhh
Confidence 99999998755 55655677999999999776533 2223455666666666644433 1122333333333 33
Q ss_pred EccCCCCC-CCCCCCCCCCCCEEEccCCCCCC
Q 000712 272 RLFGNPLE-FLPEILPLLKLRHLSLANIRIVA 302 (1336)
Q Consensus 272 ~Ls~N~L~-~lp~l~~l~~L~~L~Ls~N~l~~ 302 (1336)
.+.++... .+..+..+.+|+.|.+.++.+.+
T Consensus 700 ~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 700 SIEGCSKRTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred hhcccccceeecccccccCcceEEEEcCCCch
Confidence 43333333 44467778888888888888764
No 85
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=2.1e-07 Score=102.80 Aligned_cols=209 Identities=16% Similarity=0.101 Sum_probs=118.0
Q ss_pred hhhCCCCCCcEEEeeCCCCCC--CCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCC--ccccccC
Q 000712 119 RVVKRREPLRAVVLTKGVGSG--HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLS--ALPVDLT 194 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~--~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~--~lp~~l~ 194 (1336)
..-..++.++.|||.+|.|+. .+...+.+|++|+.|+|+.|++...+-..- ..+.+|+.|-|.+..+. .+...+.
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhh
Confidence 334456677777777777663 233344567777777777776433332111 24567777777777655 3444555
Q ss_pred CCCCCcEEEcCCCCCCCCc---cccCCC-CCCcEEEccCCcCc---cccccccCCCCCCEEEeccccccCCc--cccCCC
Q 000712 195 RLPVLEKLYLDNNKLSTLP---PELGAM-KNLKVLIVDNNMLV---CVPVELRECVGLVELSLEHNRLVRPL--LDFRAM 265 (1336)
Q Consensus 195 ~L~~L~~L~Ls~N~L~~lp---~~l~~L-~~L~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls~N~l~~~~--~~l~~L 265 (1336)
.++.+++|+++.|++..+- ...... +.+++|.+-.|... .+-.--.-++++..+.+..|.+.... ..+..+
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 6666777777766544211 111111 23333433333322 11111122467777888888776655 246667
Q ss_pred CCCcEEEccCCCCC---CCCCCCCCCCCCEEEccCCCCCCC-ccccccc-ccccCCCCCeeccCCCCCcc
Q 000712 266 AELKILRLFGNPLE---FLPEILPLLKLRHLSLANIRIVAD-ENLRSVN-VQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 266 ~~L~~L~Ls~N~L~---~lp~l~~l~~L~~L~Ls~N~l~~~-~~L~~L~-~~l~L~~L~~L~ls~N~L~~ 330 (1336)
+.+..|+|+.|+|. .+..+..++.|..|.+++|.|.++ ..=.... ....|++++.|+-+ +++.
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss 291 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KISS 291 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccch
Confidence 77888889988887 444677888899999999988763 1111111 12246667666544 4443
No 86
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.26 E-value=4.5e-08 Score=97.08 Aligned_cols=109 Identities=22% Similarity=0.224 Sum_probs=76.5
Q ss_pred CCCcEEEcCCCCCCccccc---cCCCCCCcEEEcCCCCCCCCccccC-CCCCCcEEEccCCcCccccccccCCCCCCEEE
Q 000712 174 KTVTAVSLCGLGLSALPVD---LTRLPVLEKLYLDNNKLSTLPPELG-AMKNLKVLIVDNNMLVCVPVELRECVGLVELS 249 (1336)
Q Consensus 174 ~~L~~L~Ls~N~L~~lp~~---l~~L~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~ 249 (1336)
..+..|+|+.|+|..++.. +.....|+..+|++|.+..+|+.|. ..+.++.|+|++|.|+.+|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 3456677777777655543 4445566667777777777777663 34577777788888877777777777788888
Q ss_pred eccccccCCccccCCCCCCcEEEccCCCCCCCC
Q 000712 250 LEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP 282 (1336)
Q Consensus 250 Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp 282 (1336)
++.|.+...+..+..|.+|..|+..+|.+..+|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 887777776655555777777777777776555
No 87
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=4.3e-07 Score=100.32 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=14.8
Q ss_pred ccccccccCcEEEcCCCcc
Q 000712 365 KDENAVRQLISMISSDNRH 383 (1336)
Q Consensus 365 ~~l~~L~~L~~L~Ls~N~~ 383 (1336)
+.++.+++|..|.+++|+.
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHHcCCchhheeeccCCcc
Confidence 3467788888888888884
No 88
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.3e-06 Score=76.41 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=28.5
Q ss_pred CCcEEEccCCcCccccc-cccCCCCCCEEEeccccccCCcc-ccCCCCCCcEEEccCCC
Q 000712 221 NLKVLIVDNNMLVCVPV-ELRECVGLVELSLEHNRLVRPLL-DFRAMAELKILRLFGNP 277 (1336)
Q Consensus 221 ~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~l~~~~~-~l~~L~~L~~L~Ls~N~ 277 (1336)
+|++|+|++|+|+.+|. .|.++++|++|+|++|.++.+++ .|..+++|++|+|++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554443 33445555555555555554443 34555555555555554
No 89
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.07 E-value=1.2e-06 Score=95.68 Aligned_cols=184 Identities=20% Similarity=0.178 Sum_probs=91.7
Q ss_pred CCCceEEeccCCCCCCccccccccccchhhhCCCCCCcEEEeeCCCCC---CCCc-------ccccCCCCcCEEeCCCCC
Q 000712 91 PEDTVVVELAPQEEGDVATDAANVGVEMRVVKRREPLRAVVLTKGVGS---GHLS-------DGIGVLTRLMRSDLSTSG 160 (1336)
Q Consensus 91 ~~~~~~l~l~~~~~~~~g~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~---~~~p-------~~l~~L~~L~~L~Ls~N~ 160 (1336)
+..++.++++.... +++...--...+.+-.+|+..+++.-... ..++ ..+.+|++|+..+||.|.
T Consensus 29 ~d~~~evdLSGNti-----gtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 29 MDELVEVDLSGNTI-----GTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred hcceeEEeccCCcc-----cHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 44556677766554 23333333345666677777777654211 1122 344566777777777776
Q ss_pred CCCCCCCc---cccCCCCCcEEEcCCCCCCcccc-----c---------cCCCCCCcEEEcCCCCCCCCcc-----ccCC
Q 000712 161 PGNNMGSG---FCDHWKTVTAVSLCGLGLSALPV-----D---------LTRLPVLEKLYLDNNKLSTLPP-----ELGA 218 (1336)
Q Consensus 161 l~~~~~~~---~~~~L~~L~~L~Ls~N~L~~lp~-----~---------l~~L~~L~~L~Ls~N~L~~lp~-----~l~~ 218 (1336)
+....++. .+.+-+.|..|.|++|.+..+.. . ..+-+.|+......|++...+. .+..
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~s 183 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLES 183 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHh
Confidence 55444433 23455667777777776653221 1 1223455666666665553332 1222
Q ss_pred CCCCcEEEccCCcCcc------ccccccCCCCCCEEEeccccccCCc-----cccCCCCCCcEEEccCCCCC
Q 000712 219 MKNLKVLIVDNNMLVC------VPVELRECVGLVELSLEHNRLVRPL-----LDFRAMAELKILRLFGNPLE 279 (1336)
Q Consensus 219 L~~L~~L~Ls~N~L~~------lp~~l~~L~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~~L~Ls~N~L~ 279 (1336)
-.+|+++.+..|.|.. +-..+..+.+|+.|||.+|-++... ..++.++.|+.|.+..|-++
T Consensus 184 h~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 184 HENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred hcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 2455555555555540 1112334455555555555554322 12344444555555555443
No 90
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=7.3e-06 Score=86.83 Aligned_cols=119 Identities=25% Similarity=0.363 Sum_probs=61.4
Q ss_pred cEEEcCCCCCCccccccCC-CCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCcccccccc-CCCCCCEEEecccc
Q 000712 177 TAVSLCGLGLSALPVDLTR-LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELR-ECVGLVELSLEHNR 254 (1336)
Q Consensus 177 ~~L~Ls~N~L~~lp~~l~~-L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~N~ 254 (1336)
+.++|.+.++..+-. ++. +.+...+||++|.+..++ .|..+++|.+|.|.+|+|+.+-..+. .+++|..|.|.+|+
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 444555555443322 221 334556666666666544 34555666666666666665544442 23456666666666
Q ss_pred ccCCc--cccCCCCCCcEEEccCCCCCCCC-----CCCCCCCCCEEEccC
Q 000712 255 LVRPL--LDFRAMAELKILRLFGNPLEFLP-----EILPLLKLRHLSLAN 297 (1336)
Q Consensus 255 l~~~~--~~l~~L~~L~~L~Ls~N~L~~lp-----~l~~l~~L~~L~Ls~ 297 (1336)
|..+. ..+..++.|++|.+-+|.++.-+ -+..+++|+.||++.
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 55443 23455555666666555555333 233455555555544
No 91
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=1.8e-07 Score=92.94 Aligned_cols=111 Identities=23% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCcEEEeeCCCCCCCCccc---ccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccccCCCCCCcEE
Q 000712 126 PLRAVVLTKGVGSGHLSDG---IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKL 202 (1336)
Q Consensus 126 ~L~~L~Ls~N~l~~~~p~~---l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 202 (1336)
.+-.++|+++.+.- +++. +....+|+..+|++|. ....++.+....+.++.|+|++|+|+.+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhH-HHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 44556666665532 3332 2333445555566553 33344444444455555555555555555555555555555
Q ss_pred EcCCCCCCCCccccCCCCCCcEEEccCCcCcccccc
Q 000712 203 YLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVE 238 (1336)
Q Consensus 203 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~ 238 (1336)
+++.|.+...|.-+..|.+|-.|+..+|.+..+|..
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 555555555555444455555555555555544443
No 92
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.00 E-value=3.6e-06 Score=73.69 Aligned_cols=58 Identities=24% Similarity=0.334 Sum_probs=28.8
Q ss_pred CcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCcccc-ccCCCCCCcEEEcCCCC
Q 000712 150 RLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNK 208 (1336)
Q Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~ 208 (1336)
+|++|+|++|+ +..+++..|.++++|++|+|++|.|+.++. .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34445555443 233444444455555555555555554443 34555555555555554
No 93
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.6e-07 Score=103.72 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=78.8
Q ss_pred CcEEEeeCCCCCC-CCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCC-CCccc--cccCCCCCCcEE
Q 000712 127 LRAVVLTKGVGSG-HLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLG-LSALP--VDLTRLPVLEKL 202 (1336)
Q Consensus 127 L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-L~~lp--~~l~~L~~L~~L 202 (1336)
|++|||++..|+. .+...++.|.+|+.|.|.++++...+.. .+.+-.+|+.|||+.+. +++.. --+.+++.|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5556666555542 1223344555666666666653333322 22345556666666543 44221 124455566666
Q ss_pred EcCCCCCC--CCccccC-CCCCCcEEEccCCcCc----cccccccCCCCCCEEEeccccc-cC-CccccCCCCCCcEEEc
Q 000712 203 YLDNNKLS--TLPPELG-AMKNLKVLIVDNNMLV----CVPVELRECVGLVELSLEHNRL-VR-PLLDFRAMAELKILRL 273 (1336)
Q Consensus 203 ~Ls~N~L~--~lp~~l~-~L~~L~~L~Ls~N~L~----~lp~~l~~L~~L~~L~Ls~N~l-~~-~~~~l~~L~~L~~L~L 273 (1336)
+|+.|.+. .+...+. --++|+.|+|+++.=. .+..-...+++|.+||||+|.- +. ....|.+++-|++|.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 66666554 1111111 1135555555554311 2222224555666666665532 21 1123555555666666
Q ss_pred cCCCCCC---CCCCCCCCCCCEEEccCC
Q 000712 274 FGNPLEF---LPEILPLLKLRHLSLANI 298 (1336)
Q Consensus 274 s~N~L~~---lp~l~~l~~L~~L~Ls~N 298 (1336)
+.|..-. +-.+...+.|.+|++.++
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5554321 113445555555555443
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.84 E-value=3.4e-05 Score=91.60 Aligned_cols=155 Identities=12% Similarity=0.109 Sum_probs=100.4
Q ss_pred hhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCC-CCCccccccCCCCC
Q 000712 120 VVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPV 198 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~L~~lp~~l~~L~~ 198 (1336)
.+..+.+++.|++++|.|+. +| .+ -.+|+.|++++|......+... ..+|++|++++| .+..+|. +
T Consensus 47 r~~~~~~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------s 113 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------S 113 (426)
T ss_pred HHHHhcCCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------c
Confidence 45567899999999998776 45 22 2479999999876444444322 368999999999 6877775 4
Q ss_pred CcEEEcCCCCCC---CCccccCCCCCCcEEEccCCc-Cc--cccccccCCCCCCEEEeccccccCCccccCCCCCCcEEE
Q 000712 199 LEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILR 272 (1336)
Q Consensus 199 L~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls~N~-L~--~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~ 272 (1336)
|+.|+++.|.+. .+|. +|+.|.+.+++ .. .+|..+. ++|++|++++|....+++.+. .+|+.|+
T Consensus 114 Le~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ 183 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNIILPEKLP--ESLQSIT 183 (426)
T ss_pred cceEEeCCCCCcccccCcc------hHhheeccccccccccccccccC--CcccEEEecCCCcccCccccc--ccCcEEE
Confidence 777888877654 5554 46677775433 21 2222111 689999999998765554443 5899999
Q ss_pred ccCCCCCCCC-CCCCC-CCCCEEEccCC
Q 000712 273 LFGNPLEFLP-EILPL-LKLRHLSLANI 298 (1336)
Q Consensus 273 Ls~N~L~~lp-~l~~l-~~L~~L~Ls~N 298 (1336)
++.|....+. ....+ .++ .|++.++
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ecccccccccCccccccccc-Eechhhh
Confidence 9887533211 01111 344 6666654
No 95
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=9.2e-06 Score=91.45 Aligned_cols=166 Identities=16% Similarity=0.183 Sum_probs=113.0
Q ss_pred eEEEecCCchhHHHHHHHHHHHHHhcCCCcccccce-EEeechHHHHHHHHHcccCCHHHHHHHHHHhccccccCCCCCc
Q 000712 541 RILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDL-VCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVFAEPFPKD 619 (1336)
Q Consensus 541 rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDl-IaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF~~~~~~~ 619 (1336)
.-||+.|-|.-|+++.++-+.+-+...+.+ -|. |+|.|+|+++|..+..+ .+++++...+.++..++-.+.
T Consensus 7 ~~lSfsg~gFlg~yh~gaa~~l~~~ap~ll---~~~~~~GaSagsl~a~~ll~~-~~l~~a~~~l~~~v~e~~~~s---- 78 (354)
T KOG3773|consen 7 MNLSFSGCGFLGIYHVGAANCLPRHAPRLL---KDRSIAGASAGSLVACDLLCG-LSLEEATGELYKMVDEARRKS---- 78 (354)
T ss_pred hheeecCCceeEEEecchHHHHHHHHHHHh---ccccccCcccchHHHhhhhcc-ccHHHHHHHHHHHHHHHHHhh----
Confidence 459999999999999999988877654344 355 99999999999999655 689998777666554332211
Q ss_pred hhhHHHHHHHHHHhhhccccceeeecCCCcchHHHHHHHHHHhcCCCcchhhhhhhcCCCeEEEEEEeeccCCCcEEEee
Q 000712 620 NEAATWREKLDQIYKSSSQSFRVVVHGSKHSADQFERLLKEMCADEDGDLLIESSVKNIPKVFTVSTLVNVMPAQPFIFR 699 (1336)
Q Consensus 620 ~~~~~w~~~~~~~~~~~~~~~r~~~~~~~y~~~~Le~~Lk~~~~~~~g~~~~~~~~~~~~kv~vvsT~~d~~~~~p~lFr 699 (1336)
+. .++-+....+.+.+.+++++.+ -. ......|.++-.| ....++-++..
T Consensus 79 -------------~g--------~~tP~f~~~~~l~~~le~~LPp----da---~~la~~rl~iSlT--r~~~~~N~lis 128 (354)
T KOG3773|consen 79 -------------LG--------AFTPGFNLSDRLRSGLEDFLPP----DA---HWLASGRLHISLT--RVKDRENVLIS 128 (354)
T ss_pred -------------cC--------CCCCCcCHHHHHHHHHHHhCCh----HH---HHHhhcceeEEEE--eeeehhhhhhh
Confidence 00 0122334566677777766631 11 1112234444444 55556555555
Q ss_pred cCCCCCCCCCCCccccCCCCccccCCCCCCcccccccccccCCCcccHHHHHHHhcCCCCCCc--ceeeCCcccccCccc
Q 000712 700 NYQYPAGTPEVPFSISENSGITVLGSPTTGAQVGYKRSAFIGSCKHQVWQAIRASSAAPYYLD--DFSDDVFRWQDGAIV 777 (1336)
Q Consensus 700 ny~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lwdA~RASSAAP~yF~--p~~i~~~~~vDGGl~ 777 (1336)
+|.. +..|.||+.||+=+|.|-. |-.+.+..|+|||+.
T Consensus 129 ~F~s----------------------------------------~~~liq~L~~scyiP~ysg~~pp~~rg~~yiDGg~s 168 (354)
T KOG3773|consen 129 EFPS----------------------------------------RDELIQALMCSCYIPMYSGLKPPIFRGVRYIDGGTS 168 (354)
T ss_pred cccc----------------------------------------HHHHHHHHHHhccCccccCCCCcceeeEEEeccccc
Confidence 5542 2358999999999999964 567889999999999
Q ss_pred CCchHHH
Q 000712 778 ANNPTIF 784 (1336)
Q Consensus 778 aNNPt~~ 784 (1336)
+|-|...
T Consensus 169 nnlP~~~ 175 (354)
T KOG3773|consen 169 NNLPEAD 175 (354)
T ss_pred ccccccC
Confidence 9999865
No 96
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=4.5e-05 Score=90.58 Aligned_cols=135 Identities=24% Similarity=0.232 Sum_probs=75.7
Q ss_pred ccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCC-CCCccccccCCCCCCcEEEcCCC-CCCCCccccCCCCCC
Q 000712 145 IGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGL-GLSALPVDLTRLPVLEKLYLDNN-KLSTLPPELGAMKNL 222 (1336)
Q Consensus 145 l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N-~L~~lp~~l~~L~~L 222 (1336)
+..+.+++.|++++|. +..+| . -..+|+.|++++| .++.+|..+ .++|++|++++| .+..+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP-~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLP-V---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccC-C---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------cc
Confidence 3446778888888774 33333 1 1235788888764 466666544 257788888777 5666663 46
Q ss_pred cEEEccCCcCc---cccccccCCCCCCEEEecccc-ccCCccccCCCCCCcEEEccCCCCCCCCCCCCCCCCCEEEccCC
Q 000712 223 KVLIVDNNMLV---CVPVELRECVGLVELSLEHNR-LVRPLLDFRAMAELKILRLFGNPLEFLPEILPLLKLRHLSLANI 298 (1336)
Q Consensus 223 ~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls~N~-l~~~~~~l~~L~~L~~L~Ls~N~L~~lp~l~~l~~L~~L~Ls~N 298 (1336)
+.|+++.|.+. .+|. +|+.|.+.+++ .......-.-.++|++|++++|....+|.-. ..+|+.|+++.|
T Consensus 115 e~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~L-P~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKL-PESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCcccCcccc-cccCcEEEeccc
Confidence 66666666543 4442 45566664332 1110000011257778888777765544211 246777777765
Q ss_pred C
Q 000712 299 R 299 (1336)
Q Consensus 299 ~ 299 (1336)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 4
No 97
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.6e-07 Score=97.67 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=119.8
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCC-CCCCCCccccCCCCCcEEEcCCCCCCc--cccccCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGP-GNNMGSGFCDHWKTVTAVSLCGLGLSA--LPVDLTR 195 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~L~~--lp~~l~~ 195 (1336)
..++.|..|+.|.|.++.+.+.+...+.+-.+|+.|+|+.+.- +.......+.+++.|..|||+.|.+.. +...+..
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 3467889999999999999998888999999999999999862 223344567889999999999998761 1112222
Q ss_pred -CCCCcEEEcCCCCCC----CCccccCCCCCCcEEEccCCc-Cc-cccccccCCCCCCEEEeccccccCCc--cccCCCC
Q 000712 196 -LPVLEKLYLDNNKLS----TLPPELGAMKNLKVLIVDNNM-LV-CVPVELRECVGLVELSLEHNRLVRPL--LDFRAMA 266 (1336)
Q Consensus 196 -L~~L~~L~Ls~N~L~----~lp~~l~~L~~L~~L~Ls~N~-L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~--~~l~~L~ 266 (1336)
-++|+.|+|+++.=. .+..-...+++|.+|||++|. |+ ..-..|.+++.|++|.|+.|..-... -.+...+
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP 363 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence 257899999987422 333334788999999999987 44 45557789999999999998542111 2478899
Q ss_pred CCcEEEccCCC
Q 000712 267 ELKILRLFGNP 277 (1336)
Q Consensus 267 ~L~~L~Ls~N~ 277 (1336)
+|.+|++.++-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 99999998763
No 98
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.76 E-value=1.2e-05 Score=88.26 Aligned_cols=211 Identities=16% Similarity=0.106 Sum_probs=139.9
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCC----cccccCCCCcCEEeCCCCCCCCCCCC----------ccccCCCCCcEEEcCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHL----SDGIGVLTRLMRSDLSTSGPGNNMGS----------GFCDHWKTVTAVSLCGL 184 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~----p~~l~~L~~L~~L~Ls~N~l~~~~~~----------~~~~~L~~L~~L~Ls~N 184 (1336)
..+..+..++.++||+|.|...- ...+.+-.+|+..+++.- +++.... ..+-+|++|+..+||.|
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 34555889999999999887543 344556688888888875 3443211 12337899999999999
Q ss_pred CCC-ccc----cccCCCCCCcEEEcCCCCCCCCcc--------------ccCCCCCCcEEEccCCcCccccc-----ccc
Q 000712 185 GLS-ALP----VDLTRLPVLEKLYLDNNKLSTLPP--------------ELGAMKNLKVLIVDNNMLVCVPV-----ELR 240 (1336)
Q Consensus 185 ~L~-~lp----~~l~~L~~L~~L~Ls~N~L~~lp~--------------~l~~L~~L~~L~Ls~N~L~~lp~-----~l~ 240 (1336)
-+. ..| ..+++-+.|.+|.|++|.+..+.. ...+-+.|+......|++...|. .+.
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~ 182 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE 182 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence 877 333 346677889999999998873321 12345788889999998875443 233
Q ss_pred CCCCCCEEEeccccccCCc------cccCCCCCCcEEEccCCCCCCCC------CCCCCCCCCEEEccCCCCCCCc--cc
Q 000712 241 ECVGLVELSLEHNRLVRPL------LDFRAMAELKILRLFGNPLEFLP------EILPLLKLRHLSLANIRIVADE--NL 306 (1336)
Q Consensus 241 ~L~~L~~L~Ls~N~l~~~~------~~l~~L~~L~~L~Ls~N~L~~lp------~l~~l~~L~~L~Ls~N~l~~~~--~L 306 (1336)
.-.+|+++.+..|.|.... ..+..+.+|+.|+|..|-++..- .+...+.|+.|.+.+|-++.-. ++
T Consensus 183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v 262 (388)
T COG5238 183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV 262 (388)
T ss_pred hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence 3368888888888885431 23566788999999998887221 3455666888888888877521 11
Q ss_pred ccccccccCCCCCeeccCCCCCcc
Q 000712 307 RSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 307 ~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
...-.....++|..|...+|...+
T Consensus 263 ~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 263 LRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHHhhhhcCCCccccccchhhhcC
Confidence 111112335667777777776554
No 99
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.70 E-value=5.3e-05 Score=80.45 Aligned_cols=126 Identities=21% Similarity=0.232 Sum_probs=97.5
Q ss_pred CcEEEcCCCCCCCCcccc-CCCCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCC-CCCCcEEEccCC
Q 000712 199 LEKLYLDNNKLSTLPPEL-GAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRA-MAELKILRLFGN 276 (1336)
Q Consensus 199 L~~L~Ls~N~L~~lp~~l-~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~-L~~L~~L~Ls~N 276 (1336)
=+.++|.+.++..+-. + .-+.+...+||++|.+..++ .|..++.|.+|.|++|+|+.+.+.+.. +++|..|.|.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 5677787777764432 2 22457889999999999776 778899999999999999998887644 578999999999
Q ss_pred CCC---CCCCCCCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCCC
Q 000712 277 PLE---FLPEILPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRHK 327 (1336)
Q Consensus 277 ~L~---~lp~l~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N~ 327 (1336)
+|. .+..+..|++|++|.+-+|.++....... .+...+++++.||...-.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~-yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRL-YVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCcee-EEEEecCcceEeehhhhh
Confidence 988 44567789999999999999987554432 223357889998876543
No 100
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=6.5e-05 Score=61.35 Aligned_cols=10 Identities=10% Similarity=0.238 Sum_probs=3.2
Q ss_pred EEEcCCCCCC
Q 000712 178 AVSLCGLGLS 187 (1336)
Q Consensus 178 ~L~Ls~N~L~ 187 (1336)
+|+|++|+|+
T Consensus 5 ~L~l~~N~i~ 14 (44)
T PF12799_consen 5 ELDLSNNQIT 14 (44)
T ss_dssp EEEETSSS-S
T ss_pred EEEccCCCCc
Confidence 3333333333
No 101
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.53 E-value=3.2e-05 Score=85.38 Aligned_cols=103 Identities=28% Similarity=0.325 Sum_probs=64.2
Q ss_pred cccCCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCC--CC-CCccccCCCCCCcEEEccCCcCcc---ccccccCC
Q 000712 169 FCDHWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNK--LS-TLPPELGAMKNLKVLIVDNNMLVC---VPVELREC 242 (1336)
Q Consensus 169 ~~~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~--L~-~lp~~l~~L~~L~~L~Ls~N~L~~---lp~~l~~L 242 (1336)
....+..|+.|++.+..++++. .+..|++|++|.++.|. +. .++.....+++|++|+|++|+|.. ++ .+..+
T Consensus 38 l~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l 115 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKEL 115 (260)
T ss_pred ccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhh
Confidence 3345566677777777766552 45567778888888873 33 444444566778888888887762 22 45566
Q ss_pred CCCCEEEeccccccCCcc----ccCCCCCCcEEEc
Q 000712 243 VGLVELSLEHNRLVRPLL----DFRAMAELKILRL 273 (1336)
Q Consensus 243 ~~L~~L~Ls~N~l~~~~~----~l~~L~~L~~L~L 273 (1336)
.+|..|++.+|..+.+.. .|.-+++|++|+-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 677777777776655431 2555666666653
No 102
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=8.4e-05 Score=60.69 Aligned_cols=37 Identities=32% Similarity=0.411 Sum_probs=18.2
Q ss_pred CCcEEEccCCcCccccccccCCCCCCEEEeccccccC
Q 000712 221 NLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVR 257 (1336)
Q Consensus 221 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~ 257 (1336)
+|++|+|++|+|+.+|..+.+|++|+.|+|++|+|+.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555555555555555445555555555555555543
No 103
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=3.3e-05 Score=98.82 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=90.8
Q ss_pred CCcCEEeCCCCCCCCC-CCCccccCCCCCcEEEcCCCCCC--ccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEE
Q 000712 149 TRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLGLS--ALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVL 225 (1336)
Q Consensus 149 ~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L 225 (1336)
.+|++|++++...... .+......||+|+.|.+++-.+. .+-.-..++++|..||+|+++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 6788888888764332 23334446788888888876654 2223345678888888888888877 478888888888
Q ss_pred EccCCcCcccc--ccccCCCCCCEEEeccccccCCc-------cccCCCCCCcEEEccCCCCC
Q 000712 226 IVDNNMLVCVP--VELRECVGLVELSLEHNRLVRPL-------LDFRAMAELKILRLFGNPLE 279 (1336)
Q Consensus 226 ~Ls~N~L~~lp--~~l~~L~~L~~L~Ls~N~l~~~~-------~~l~~L~~L~~L~Ls~N~L~ 279 (1336)
.+.+=.+..-. ..+.+|++|+.||+|........ ..-..|++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88777666322 36678888888888877654433 12345889999999987776
No 104
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=4.9e-05 Score=97.26 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=100.0
Q ss_pred CCCCcEEEcCCCCCC--ccccccC-CCCCCcEEEcCCCCCC--CCccccCCCCCCcEEEccCCcCccccccccCCCCCCE
Q 000712 173 WKTVTAVSLCGLGLS--ALPVDLT-RLPVLEKLYLDNNKLS--TLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVE 247 (1336)
Q Consensus 173 L~~L~~L~Ls~N~L~--~lp~~l~-~L~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~ 247 (1336)
-.+|++|++++...- .-|..++ .||+|+.|.+++-.+. .+-....++++|..||+|+.+++.+ .++++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 468999999997633 2233344 4799999999987776 3334457889999999999999988 68999999999
Q ss_pred EEeccccccCCc--cccCCCCCCcEEEccCCCCCCCC--------CCCCCCCCCEEEccCCCCCC
Q 000712 248 LSLEHNRLVRPL--LDFRAMAELKILRLFGNPLEFLP--------EILPLLKLRHLSLANIRIVA 302 (1336)
Q Consensus 248 L~Ls~N~l~~~~--~~l~~L~~L~~L~Ls~N~L~~lp--------~l~~l~~L~~L~Ls~N~l~~ 302 (1336)
|.+.+=.+..-. ..+.+|++|+.||+|......-+ .-..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999887776432 46889999999999987755222 23358999999999888775
No 105
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00016 Score=80.01 Aligned_cols=83 Identities=25% Similarity=0.288 Sum_probs=39.7
Q ss_pred CCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCC--cCc-cccccccCCCCCCEEEeccccccCCc--cccCCCCCCcE
Q 000712 196 LPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNN--MLV-CVPVELRECVGLVELSLEHNRLVRPL--LDFRAMAELKI 270 (1336)
Q Consensus 196 L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N--~L~-~lp~~l~~L~~L~~L~Ls~N~l~~~~--~~l~~L~~L~~ 270 (1336)
+..|+.|++.+..++++. .+-.|++|+.|.++.| ++. .++....++++|++|+|++|+|..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 344555555555555332 2334556666666666 332 33333344455555555555554321 22444444555
Q ss_pred EEccCCCCC
Q 000712 271 LRLFGNPLE 279 (1336)
Q Consensus 271 L~Ls~N~L~ 279 (1336)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 555555444
No 106
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=2.6e-05 Score=85.97 Aligned_cols=85 Identities=27% Similarity=0.348 Sum_probs=52.1
Q ss_pred CCCCCcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccc--cccCCCCCCEEE
Q 000712 172 HWKTVTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPV--ELRECVGLVELS 249 (1336)
Q Consensus 172 ~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~--~l~~L~~L~~L~ 249 (1336)
.+.+.+.||+.+|.|+.|. -..+++.|+.|.|+-|+|+.+. .+..+++|++|+|..|.|..+.+ -+.++++|+.|+
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455666777777766552 2345666777777777776664 35666677777777776664432 345666666666
Q ss_pred eccccccCC
Q 000712 250 LEHNRLVRP 258 (1336)
Q Consensus 250 Ls~N~l~~~ 258 (1336)
|..|.-.+.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 666655443
No 107
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids. Catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Calcium is required for cPLA2 to bind with membranes or phospholipids. Group IV cPLA2 includes six intercellular enzymes: cPLA2alpha, cPLA2beta, cPLA2gamma, cPLA2delta, cP
Probab=96.59 E-value=0.006 Score=73.87 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCceEEEecCCchhH-HHHHHHHHHHHHhcCCCcccccceEEeechHHH-HHHHHHcccCCHHHHH
Q 000712 537 KQGLRILSMDGGGMKG-LATVQILKEIEKGTGKRIHELFDLVCGTSTGGM-LAIALAVKLMTLDQCE 601 (1336)
Q Consensus 537 ~~~~rILsLDGGGiRG-l~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgI-iA~~La~~~~s~~e~~ 601 (1336)
..+...|++.|||.|+ ++++|+|++|++. .+.+.+++|+|+|.|+. ++.+++....+++++.
T Consensus 40 ~~p~i~~~~sGGG~Ra~~~~~G~l~~l~~~---gll~~~~yisg~Sgg~w~~~~~~~~~~~~~~~l~ 103 (438)
T cd00147 40 EVPVIAILGSGGGYRAMTGGAGALKALDEG---GLLDCVTYLSGLSGSTWLMASLYSNPDWSQKDLD 103 (438)
T ss_pred cCceEEEEecCchHHHHHhhhHHHHHHHhC---CchhccceeeeccchHHHHHHHHHcCCCChhhhh
Confidence 3457889999999999 7899999999995 57788999999999995 5555555656665554
No 108
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00019 Score=79.34 Aligned_cols=82 Identities=26% Similarity=0.131 Sum_probs=48.0
Q ss_pred CCCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC---CCCCCCCCCEEEc
Q 000712 219 MKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP---EILPLLKLRHLSL 295 (1336)
Q Consensus 219 L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp---~l~~l~~L~~L~L 295 (1336)
+.+.+.|++-++.|+.|. ...+++.|+.|.||-|+|+.+. .|..|++|+.|+|..|.|..+. .+.++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 344555566666665442 2345566666666666665542 3556666666666666666554 3446666677777
Q ss_pred cCCCCCC
Q 000712 296 ANIRIVA 302 (1336)
Q Consensus 296 s~N~l~~ 302 (1336)
..|.-.+
T Consensus 96 ~ENPCc~ 102 (388)
T KOG2123|consen 96 DENPCCG 102 (388)
T ss_pred ccCCccc
Confidence 7666544
No 109
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.03 E-value=0.016 Score=58.10 Aligned_cols=104 Identities=11% Similarity=0.189 Sum_probs=42.2
Q ss_pred hhhCCCCCCcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCccccc-cCCCC
Q 000712 119 RVVKRREPLRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPVD-LTRLP 197 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~~-l~~L~ 197 (1336)
..|..+++|+.+.+.. .+...-...|.++++|+.+.+.++ ...+....|.++.+|+.+.+.+ .+..++.. +..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4566666666666654 344444455566666666666554 3334444455555566666643 34434332 33355
Q ss_pred CCcEEEcCCCCCCCCcc-ccCCCCCCcEEEcc
Q 000712 198 VLEKLYLDNNKLSTLPP-ELGAMKNLKVLIVD 228 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls 228 (1336)
+|+.+.+..+ +..++. .+.+. +|+.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555443 333332 22333 44444444
No 110
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.00 E-value=7.3e-05 Score=91.88 Aligned_cols=176 Identities=22% Similarity=0.215 Sum_probs=107.2
Q ss_pred CcEEEeeCCCCCCCCc----ccccCCCCcCEEeCCCCCCCCCCCCcccc---CC-CCCcEEEcCCCCCC-----cccccc
Q 000712 127 LRAVVLTKGVGSGHLS----DGIGVLTRLMRSDLSTSGPGNNMGSGFCD---HW-KTVTAVSLCGLGLS-----ALPVDL 193 (1336)
Q Consensus 127 L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~~~~~~~---~L-~~L~~L~Ls~N~L~-----~lp~~l 193 (1336)
+..|.|.+|.+..... ..+..+..|..|+|++|.+.......... .. ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 7778888887765322 44556778888888888655332221111 21 44667777777776 444556
Q ss_pred CCCCCCcEEEcCCCCCC-----CCccccC----CCCCCcEEEccCCcCc-----cccccccCCCC-CCEEEeccccccCC
Q 000712 194 TRLPVLEKLYLDNNKLS-----TLPPELG----AMKNLKVLIVDNNMLV-----CVPVELRECVG-LVELSLEHNRLVRP 258 (1336)
Q Consensus 194 ~~L~~L~~L~Ls~N~L~-----~lp~~l~----~L~~L~~L~Ls~N~L~-----~lp~~l~~L~~-L~~L~Ls~N~l~~~ 258 (1336)
.....|+.|+++.|.+. .++..+. ...++++|+|.+|.++ .+-..+...+. +..|++.+|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 66777888888888774 2223333 4667777777777766 12223344444 66677777777543
Q ss_pred c-----cccCCC-CCCcEEEccCCCCCCC-----C-CCCCCCCCCEEEccCCCCCC
Q 000712 259 L-----LDFRAM-AELKILRLFGNPLEFL-----P-EILPLLKLRHLSLANIRIVA 302 (1336)
Q Consensus 259 ~-----~~l~~L-~~L~~L~Ls~N~L~~l-----p-~l~~l~~L~~L~Ls~N~l~~ 302 (1336)
. +.+..+ ..++.++++.|.|+.- . .+..+..++.|.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 2 234455 5667777777777621 1 34456677777777777665
No 111
>PF12770 CHAT: CHAT domain
Probab=95.90 E-value=0.057 Score=62.30 Aligned_cols=83 Identities=22% Similarity=0.366 Sum_probs=61.6
Q ss_pred CCCCCChHHHHHHHHhcc-ccEEEEecCCCC---------CHHHHHHHHhcCCcEEEcCCCCcCCcccceecCCCccccc
Q 000712 1176 PSMHLTPDDVRWMIGAWR-ERIIICTGTYGP---------TPPVVKAFLDSGAKAVVCPSAEPQEMSLTSFHGSGEFNVV 1245 (1336)
Q Consensus 1176 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1245 (1336)
+...|+++|+..| .|+ -++||-++-.+- ..+|+.||+.+||.+||.+.-+-+
T Consensus 173 ~~~~l~~~~l~~l--~l~~~~lVvLsaC~s~~~~~~~~~~~~~l~~~~l~aG~~~Vi~~~w~V~---------------- 234 (287)
T PF12770_consen 173 EDGLLSAEELAQL--DLRGPRLVVLSACESASGDPSDGDEVLGLARAFLQAGAPAVIGMLWPVP---------------- 234 (287)
T ss_pred CCcccCHHHHHhh--cCCCCCEEEecCcCCcCCCCCCchHHHHHHHHHHHcCCCEEEecccCcc----------------
Confidence 6678899988773 455 777774442222 128999999999999998665222
Q ss_pred cCCceecccccccccCCCCCCCCCCCCCCCcccccCcccCccchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Q 000712 1246 ENGRFEIGEEEAEDEDVEPSSPVSDWEDSEPEKSGEHLMGVWDDEEEELSQFICHLYDFLFREGARVDAALQKALAS 1322 (1336)
Q Consensus 1246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1322 (1336)
...-..|+..||+.|+ .|.++..||+.|-..
T Consensus 235 ---------------------------------------------d~~a~~f~~~fY~~L~-~g~~~~~Al~~Ar~~ 265 (287)
T PF12770_consen 235 ---------------------------------------------DQAAARFMRRFYRALL-QGQSVAEALRQARRA 265 (287)
T ss_pred ---------------------------------------------hHHHHHHHHHHHHhhh-cCCCHHHHHHHHHHH
Confidence 2333569999999999 599999999998654
No 112
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.59 E-value=0.029 Score=56.25 Aligned_cols=83 Identities=13% Similarity=0.207 Sum_probs=31.8
Q ss_pred cccCCCCcCEEeCCCCCCCCCCCCccccCCCCCcEEEcCCCCCCcccc-ccCCCCCCcEEEcCCCCCCCCc-cccCCCCC
Q 000712 144 GIGVLTRLMRSDLSTSGPGNNMGSGFCDHWKTVTAVSLCGLGLSALPV-DLTRLPVLEKLYLDNNKLSTLP-PELGAMKN 221 (1336)
Q Consensus 144 ~l~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~L~~lp~-~l~~L~~L~~L~Ls~N~L~~lp-~~l~~L~~ 221 (1336)
.|.++++|+.+.+..+ ...+....|.++.+|+.+.+.++ +..++. .+.++++|+.+.+.+ .+..++ ..+..+++
T Consensus 7 ~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4455555555555532 23344444555555555555543 444442 233444555555543 332222 12334455
Q ss_pred CcEEEccCC
Q 000712 222 LKVLIVDNN 230 (1336)
Q Consensus 222 L~~L~Ls~N 230 (1336)
|+.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 555555443
No 113
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.58 E-value=0.029 Score=54.99 Aligned_cols=114 Identities=21% Similarity=0.225 Sum_probs=92.2
Q ss_pred ccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchh
Q 000712 408 CDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRI 487 (1336)
Q Consensus 408 L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~ 487 (1336)
.++...+..++.+.+......++..+.+++...+.....+...+.++.|..++.+.++.++..++.++++++...+....
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 44556667777777777788888999999977778888888889999999999999999999999999999876655555
Q ss_pred hhchhhHHHHHHHhccCCChhhHHHHHHHHHHhc
Q 000712 488 LVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1336)
Q Consensus 488 ~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lg 521 (1336)
.+-..++.+.|.++....+.++++.+.+.+..+.
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4434455588888888889999999999887764
No 114
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=95.05 E-value=0.0015 Score=76.15 Aligned_cols=206 Identities=13% Similarity=0.044 Sum_probs=115.1
Q ss_pred hhhCCCCCCcEEEeeCCC-CCCCCcccc-cCCCCcCEEeCCCCCCCC-CCCCccccCCCCCcEEEcCCCC-CC--ccccc
Q 000712 119 RVVKRREPLRAVVLTKGV-GSGHLSDGI-GVLTRLMRSDLSTSGPGN-NMGSGFCDHWKTVTAVSLCGLG-LS--ALPVD 192 (1336)
Q Consensus 119 ~~l~~l~~L~~L~Ls~N~-l~~~~p~~l-~~L~~L~~L~Ls~N~l~~-~~~~~~~~~L~~L~~L~Ls~N~-L~--~lp~~ 192 (1336)
.....+++++.|++.++. ++...-.++ ..+++|++|+|..|..++ .........+++|++|+++.|. |+ .+...
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 345678999999998884 333222233 468999999999865333 2233345678999999999886 44 23233
Q ss_pred cCCCCCCcEEEcCCCCCCCCc---cccCCCCCCcEEEccCCc-Ccc--ccccccCCCCCCEEEeccccc-cCCc-cc-cC
Q 000712 193 LTRLPVLEKLYLDNNKLSTLP---PELGAMKNLKVLIVDNNM-LVC--VPVELRECVGLVELSLEHNRL-VRPL-LD-FR 263 (1336)
Q Consensus 193 l~~L~~L~~L~Ls~N~L~~lp---~~l~~L~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~l-~~~~-~~-l~ 263 (1336)
..+++.|+.+.+.+|.=..+- ..-..+..+..+++.++. ++. +-..-..+..|+.|..+++.. +... .. -.
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 445666777777654211111 111233445556655554 331 111124456777777776543 2211 12 24
Q ss_pred CCCCCcEEEccCCC-CC--CCCCC-CCCCCCCEEEccCCCCCCCcccccccccccCCCCCeeccCCC
Q 000712 264 AMAELKILRLFGNP-LE--FLPEI-LPLLKLRHLSLANIRIVADENLRSVNVQIEMENNSYFGASRH 326 (1336)
Q Consensus 264 ~L~~L~~L~Ls~N~-L~--~lp~l-~~l~~L~~L~Ls~N~l~~~~~L~~L~~~l~L~~L~~L~ls~N 326 (1336)
+..+|+.|-|+.++ ++ .+..+ .+++.|+.|++..+.......+.++ ....+.++.+.++++
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl--s~~C~~lr~lslshc 382 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL--SRNCPRLRVLSLSHC 382 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh--ccCCchhccCChhhh
Confidence 45777777777765 33 11122 3566777777777665543333322 124556666666644
No 115
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.03 E-value=0.0003 Score=86.60 Aligned_cols=178 Identities=22% Similarity=0.204 Sum_probs=104.5
Q ss_pred cCEEeCCCCCCCCCCCC---ccccCCCCCcEEEcCCCCCC-----ccccccCCC-CCCcEEEcCCCCCC-----CCcccc
Q 000712 151 LMRSDLSTSGPGNNMGS---GFCDHWKTVTAVSLCGLGLS-----ALPVDLTRL-PVLEKLYLDNNKLS-----TLPPEL 216 (1336)
Q Consensus 151 L~~L~Ls~N~l~~~~~~---~~~~~L~~L~~L~Ls~N~L~-----~lp~~l~~L-~~L~~L~Ls~N~L~-----~lp~~l 216 (1336)
|..|.|.+|.+...... ..+..+.+|..|+|++|.+. .+-..+... ..|++|++..|.++ .+...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 77778888865444322 23345677888888888877 122223333 55677777777776 344556
Q ss_pred CCCCCCcEEEccCCcCc-----ccccccc----CCCCCCEEEeccccccCCc-----cccCCCCC-CcEEEccCCCCCC-
Q 000712 217 GAMKNLKVLIVDNNMLV-----CVPVELR----ECVGLVELSLEHNRLVRPL-----LDFRAMAE-LKILRLFGNPLEF- 280 (1336)
Q Consensus 217 ~~L~~L~~L~Ls~N~L~-----~lp~~l~----~L~~L~~L~Ls~N~l~~~~-----~~l~~L~~-L~~L~Ls~N~L~~- 280 (1336)
.....|+.|+++.|.+. .++..+. ...++++|+|++|.++... ..+...+. +..|++.+|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 56777888888888764 2333333 3667777777777765322 12444444 5667777777662
Q ss_pred -----CCCCCCC-CCCCEEEccCCCCCCCc--ccccccccccCCCCCeeccCCCCCcc
Q 000712 281 -----LPEILPL-LKLRHLSLANIRIVADE--NLRSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 281 -----lp~l~~l-~~L~~L~Ls~N~l~~~~--~L~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
.|.+..+ ..+++|+++.|.|+... .+.. .......++.+.+..|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~--~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAE--VLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHH--HHhhhHHHHHhhcccCcccc
Confidence 1234444 56677777777777521 1111 11224456666666666654
No 116
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=0.056 Score=62.02 Aligned_cols=141 Identities=24% Similarity=0.241 Sum_probs=105.6
Q ss_pred HhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhh
Q 000712 388 ACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEV 467 (1336)
Q Consensus 388 ~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~V 467 (1336)
+|.++.++.....+..-..++.....++.-+-.+..+..-....++.+|+ +-+....++.+.+.+.+|..+.+.+..+|
T Consensus 105 a~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLa-T~d~nk~kiA~sGaL~pltrLakskdirv 183 (550)
T KOG4224|consen 105 AGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLA-TFDSNKVKIARSGALEPLTRLAKSKDIRV 183 (550)
T ss_pred hhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhh-ccccchhhhhhccchhhhHhhcccchhhH
Confidence 34455555544443333333333333333333444444445667777777 44777888999999999999999999999
Q ss_pred hhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhHhh
Q 000712 468 QRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAI 530 (1336)
Q Consensus 468 q~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr~i 530 (1336)
|+.++.++-|+.-..|+|+.++.+..+ +.|..+..+.+++++.-++-++..++-+...|+..
T Consensus 184 qrnatgaLlnmThs~EnRr~LV~aG~l-pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 184 QRNATGALLNMTHSRENRRVLVHAGGL-PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhccCCc-hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 999999999999999999999988888 99999999999999999999999998877666543
No 117
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.37 E-value=0.33 Score=59.57 Aligned_cols=147 Identities=20% Similarity=0.205 Sum_probs=117.5
Q ss_pred cCCCcchhHHHhhhhccCccChhhh-cccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHH
Q 000712 378 SSDNRHVVEQACSALSSLAGDVSVA-MLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (1336)
Q Consensus 378 Ls~N~~l~~~~~~~L~~Lp~~~~~l-~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L 456 (1336)
-.+|+.+..+++-+|+++..+-..- .....-+.+-.++.++.++.....-++..+|.+++-.+...+..++..+++.+|
T Consensus 120 ~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pL 199 (514)
T KOG0166|consen 120 RDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPL 199 (514)
T ss_pred cCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHH
Confidence 3456788889999999999755444 445566666667889999999989999999999999999999999999999999
Q ss_pred HHHHhcCCh-hhhhHHHhhhcccccccccchh-hhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchh
Q 000712 457 KLLCAHKNP-EVQRFALLAVGNLAFCLENRRI-LVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1336)
Q Consensus 457 ~~l~~~~~~-~Vq~~aL~al~~laf~~e~r~~-~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~ 525 (1336)
..+.....+ ...+.+..++.|+ |+..+.++ +..-..+-+.|..+..+.|+++...|+|++.+|....+
T Consensus 200 l~~l~~~~~~~~lRn~tW~LsNl-crgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 200 LRLLNKSDKLSMLRNATWTLSNL-CRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred HHHhccccchHHHHHHHHHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 887777665 6677788888888 66665444 33333444889999999999999999999999987654
No 118
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.03 E-value=0.0029 Score=68.60 Aligned_cols=80 Identities=19% Similarity=0.077 Sum_probs=36.9
Q ss_pred CCCcEEEccCCcCccccccccCCCCCCEEEeccccccCCccccCCCCCCcEEEccCCCCCCCC-CCCCCCCCCEEEccCC
Q 000712 220 KNLKVLIVDNNMLVCVPVELRECVGLVELSLEHNRLVRPLLDFRAMAELKILRLFGNPLEFLP-EILPLLKLRHLSLANI 298 (1336)
Q Consensus 220 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~l~~~~~~l~~L~~L~~L~Ls~N~L~~lp-~l~~l~~L~~L~Ls~N 298 (1336)
...+.||++.|++..+-..++.++.|..|+++.|++.-++.+++.+..+..+++.+|+++..| ++...+.++++++..|
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 344444444444444434444444444444444444444444444444444444444444333 4444455555555444
Q ss_pred C
Q 000712 299 R 299 (1336)
Q Consensus 299 ~ 299 (1336)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 119
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.91 E-value=0.0033 Score=68.18 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=32.0
Q ss_pred CcEEEcCCCCCCccccccCCCCCCcEEEcCCCCCCCCccccCCCCCCcEEEccCCcCccccccccCCCCCCEEEeccc
Q 000712 176 VTAVSLCGLGLSALPVDLTRLPVLEKLYLDNNKLSTLPPELGAMKNLKVLIVDNNMLVCVPVELRECVGLVELSLEHN 253 (1336)
Q Consensus 176 L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 253 (1336)
.+.||++.|++..+-..++.++.|..|+++.|.+..+|..+..+..+..+++.+|+.+..|.++..++.++++++..|
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 333344444333333333333444444444444444444444444444444444444444444444444444444333
No 120
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.50 E-value=0.026 Score=69.72 Aligned_cols=132 Identities=21% Similarity=0.158 Sum_probs=84.2
Q ss_pred hhCCCCCCcEEEeeCCCCCCC--CcccccCCCCcCEEeCCCC-CCCCCC---CCccccCCCCCcEEEcCCCC-CCccc-c
Q 000712 120 VVKRREPLRAVVLTKGVGSGH--LSDGIGVLTRLMRSDLSTS-GPGNNM---GSGFCDHWKTVTAVSLCGLG-LSALP-V 191 (1336)
Q Consensus 120 ~l~~l~~L~~L~Ls~N~l~~~--~p~~l~~L~~L~~L~Ls~N-~l~~~~---~~~~~~~L~~L~~L~Ls~N~-L~~lp-~ 191 (1336)
....+++|+.|.+.++.-... +-.....+++|+.|+++++ ...... .......+++|+.|+|+++. ++..- .
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 344578999999888733222 2244567899999999873 111111 12244567899999999988 55221 2
Q ss_pred ccC-CCCCCcEEEcCCCC-CC--CCccccCCCCCCcEEEccCCcCc---cccccccCCCCCCEEEec
Q 000712 192 DLT-RLPVLEKLYLDNNK-LS--TLPPELGAMKNLKVLIVDNNMLV---CVPVELRECVGLVELSLE 251 (1336)
Q Consensus 192 ~l~-~L~~L~~L~Ls~N~-L~--~lp~~l~~L~~L~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls 251 (1336)
.+. .+++|++|.+.++. ++ .+-.....+++|++|+|+++... .+.....++++|+.|.+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 222 37899999988777 56 33334467888999999988753 233334456666665543
No 121
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.74 E-value=0.02 Score=70.72 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=85.8
Q ss_pred cCCCCcCEEeCCCCCCCCCC-CCccccCCCCCcEEEcCCC-C-CCcc----ccccCCCCCCcEEEcCCCC-CCC--Cccc
Q 000712 146 GVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGL-G-LSAL----PVDLTRLPVLEKLYLDNNK-LST--LPPE 215 (1336)
Q Consensus 146 ~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N-~-L~~l----p~~l~~L~~L~~L~Ls~N~-L~~--lp~~ 215 (1336)
..+++|+.|.+..+...... .......+++|+.|+++++ . +... ......+.+|+.|+++++. ++. +...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34789999999988533331 2344568899999999984 2 2211 1234457899999999998 662 2222
Q ss_pred cCCCCCCcEEEccCCc-Cc--cccccccCCCCCCEEEeccccccCCc---cccCCCCCCcEEEccC
Q 000712 216 LGAMKNLKVLIVDNNM-LV--CVPVELRECVGLVELSLEHNRLVRPL---LDFRAMAELKILRLFG 275 (1336)
Q Consensus 216 l~~L~~L~~L~Ls~N~-L~--~lp~~l~~L~~L~~L~Ls~N~l~~~~---~~l~~L~~L~~L~Ls~ 275 (1336)
...+++|+.|.+.++. ++ .+-.....+++|++|+|+++...... ....++++|+.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 2348899999988787 56 44445577889999999988664211 1244466666655433
No 122
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=0.26 Score=56.80 Aligned_cols=157 Identities=18% Similarity=0.196 Sum_probs=113.6
Q ss_pred ccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhch
Q 000712 371 RQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTK 450 (1336)
Q Consensus 371 ~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~ 450 (1336)
+.|..|.=++-+++.-+++.+|..|..+-.-......-+-.--...++.++--..+....-++.+++.. +.-...+.+.
T Consensus 254 ~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih-plNe~lI~da 332 (550)
T KOG4224|consen 254 PALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH-PLNEVLIADA 332 (550)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc-cCcccceecc
Confidence 455555556667777788888888876555444444444444455677777766677777777777744 3334566778
Q ss_pred HHHHHHHHHHhcCChh-hhhHHHhhhccccccc-ccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhH
Q 000712 451 DVLKSLKLLCAHKNPE-VQRFALLAVGNLAFCL-ENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRR 528 (1336)
Q Consensus 451 ~lL~~L~~l~~~~~~~-Vq~~aL~al~~laf~~-e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr 528 (1336)
+.+++|..+++.+..+ .|.+++..++|||-.. .++..++ -.+..+.|.++.....-.|+......+++|..+++-|.
T Consensus 333 gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~ 411 (550)
T KOG4224|consen 333 GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKE 411 (550)
T ss_pred cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHH
Confidence 8899999999987655 9999999999999644 4444454 44555889999998888999999999999999886664
Q ss_pred h
Q 000712 529 A 529 (1336)
Q Consensus 529 ~ 529 (1336)
.
T Consensus 412 ~ 412 (550)
T KOG4224|consen 412 A 412 (550)
T ss_pred H
Confidence 3
No 123
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.38 E-value=0.084 Score=36.39 Aligned_cols=19 Identities=21% Similarity=0.525 Sum_probs=10.9
Q ss_pred CcEEEcCCCCCCccccccC
Q 000712 176 VTAVSLCGLGLSALPVDLT 194 (1336)
Q Consensus 176 L~~L~Ls~N~L~~lp~~l~ 194 (1336)
|++|+|++|+|+.+|..|.
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 5566666666665555443
No 124
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=91.18 E-value=0.093 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=7.9
Q ss_pred CcEEEccCCcCcccccc
Q 000712 222 LKVLIVDNNMLVCVPVE 238 (1336)
Q Consensus 222 L~~L~Ls~N~L~~lp~~ 238 (1336)
|++|+|++|+|+.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 125
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=91.15 E-value=0.9 Score=51.73 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=105.2
Q ss_pred EEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHH
Q 000712 376 MISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKS 455 (1336)
Q Consensus 376 L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~ 455 (1336)
|..+..+.+.+.+..++.........-.-..+++...-+.+++.++.+.....++.++.+++...+... . ...-+-+.
T Consensus 21 L~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~-~-Ik~~i~~V 98 (254)
T PF04826_consen 21 LESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE-Q-IKMYIPQV 98 (254)
T ss_pred HhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH-H-HHHHHHHH
Confidence 345566666666666666665444444456677778888899999999988899999999985543322 2 22233444
Q ss_pred HHHHHh-cCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhH
Q 000712 456 LKLLCA-HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRR 528 (1336)
Q Consensus 456 L~~l~~-~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr 528 (1336)
++.... ..+.++|..+|..+.+++...+.+..+. ..+ ..+.++..+.+...+..+.+.|..|.+++...+
T Consensus 99 c~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i-~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 99 CEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYI-PDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhH-HHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH
Confidence 444333 3688999999999999987766655554 355 556788888899999999999999999986533
No 126
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=90.48 E-value=0.63 Score=65.75 Aligned_cols=142 Identities=14% Similarity=0.178 Sum_probs=112.8
Q ss_pred HhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhh
Q 000712 388 ACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEV 467 (1336)
Q Consensus 388 ~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~V 467 (1336)
...+|..+-.+......+.+-|....+..++.....+.+......|..|+-..+.....+...+.++.|..++.+.++.+
T Consensus 383 V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~i 462 (2102)
T PLN03200 383 IIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQ 462 (2102)
T ss_pred HHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHH
Confidence 34455554444444455667788888899999999988889999999888777888888889999999999999999999
Q ss_pred hhHHHhhhccccccc-ccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccc-hhhhHhh
Q 000712 468 QRFALLAVGNLAFCL-ENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN-ESLRRAI 530 (1336)
Q Consensus 468 q~~aL~al~~laf~~-e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen-~~lRr~i 530 (1336)
|..++..+++++-.. +++..++ ..+..+.|.++..+.++.+++.|++++..++.+ ++.|..+
T Consensus 463 Q~~A~~~L~nLa~~ndenr~aIi-eaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 463 QEYAVALLAILTDEVDESKWAIT-AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999997544 4455555 445559999999999999999999999987754 3555555
No 127
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=89.83 E-value=0.92 Score=54.48 Aligned_cols=63 Identities=19% Similarity=0.332 Sum_probs=49.1
Q ss_pred CCCceEEEecCCchhHHH-HHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHccc-C--CHHHHHH
Q 000712 537 KQGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKL-M--TLDQCEE 602 (1336)
Q Consensus 537 ~~~~rILsLDGGGiRGl~-~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~-~--s~~e~~~ 602 (1336)
..+...|++.|||.|.++ .+|+|+++.+. .+.+...+|+|.|-|+.+...|.... + +++++.+
T Consensus 37 ~~P~i~ia~SGGG~RAm~~~~G~l~al~~~---GLl~~~tY~sglSGgsWl~~sLy~nn~w~t~v~~l~~ 103 (430)
T cd07202 37 KAPVIAVLGSGGGLRAMIACLGVLSELDKA---GLLDCVTYLAGVSGSTWCMSSLYTEPDWSTKLQTVED 103 (430)
T ss_pred cCCeEEEEecCccHHHHHhccHHHHHhhhC---ChhhhhhhhccccchHHHHHHHHhcCCccccHHHHHH
Confidence 345678999999999875 89999999886 57788999999999998755554442 3 4666654
No 128
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=89.65 E-value=0.69 Score=58.71 Aligned_cols=114 Identities=23% Similarity=0.258 Sum_probs=94.3
Q ss_pred HhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchh---hhch
Q 000712 415 IAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRI---LVTS 491 (1336)
Q Consensus 415 l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~---~~~s 491 (1336)
+.||.+..+..+..+--++.+++|..+.+..++..-+-+..|..+..+.+++||+.+..++.||.|...+... +...
T Consensus 239 i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~ 318 (717)
T KOG1048|consen 239 ISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKEL 318 (717)
T ss_pred HHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhc
Confidence 4566667777777788889999999999999998888899999999999999999999999999999987444 3345
Q ss_pred hhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhH
Q 000712 492 ESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRR 528 (1336)
Q Consensus 492 e~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr 528 (1336)
.++..++..+....|.++++.++..|-.|..++.++.
T Consensus 319 ~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~ 355 (717)
T KOG1048|consen 319 NGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKM 355 (717)
T ss_pred CChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHH
Confidence 5675666666778999999999999988888865553
No 129
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.54 E-value=0.62 Score=65.80 Aligned_cols=151 Identities=20% Similarity=0.153 Sum_probs=120.7
Q ss_pred ccCcEEEcCCCcchhHHHhhhhccCccC-hhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhc
Q 000712 371 RQLISMISSDNRHVVEQACSALSSLAGD-VSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLT 449 (1336)
Q Consensus 371 ~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~-~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~ 449 (1336)
+-|..|--..+......++..|..|..+ ...............+..+|.+.....+..++..+.+++-.++.....+..
T Consensus 407 k~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie 486 (2102)
T PLN03200 407 KVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA 486 (2102)
T ss_pred hhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444454455667778888888888854 455566677777888889999988877778888888898667777788889
Q ss_pred hHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhc
Q 000712 450 KDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1336)
Q Consensus 450 ~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lg 521 (1336)
.+.++.|..++.+.++.+|..+..+++|++...++.+..+...+..+.|.++..+.+++.++.|.++|..+.
T Consensus 487 aGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 487 AGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766566665544455588888888889999999999998884
No 130
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=88.65 E-value=0.86 Score=58.82 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=112.2
Q ss_pred hhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhH
Q 000712 391 ALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRF 470 (1336)
Q Consensus 391 ~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~ 470 (1336)
.|-+|.++...-.++..-+++..+..+|.+.+.+..+..+..|..|++..+ -...+...+++.+|..++.+.+...+..
T Consensus 272 lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~~~giV~kL~kLl~s~~~~l~~~ 350 (708)
T PF05804_consen 272 LLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMAESGIVEKLLKLLPSENEDLVNV 350 (708)
T ss_pred HHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCHHHHHHHhcCCCHHHHHH
Confidence 577788787888888899999999999999988888888888999986655 4677788899999999999999999999
Q ss_pred HHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhHh
Q 000712 471 ALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRA 529 (1336)
Q Consensus 471 aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr~ 529 (1336)
++..+-||+|..+.|..++..+.+ +.|..+... +..+..+...|..+..++..|..
T Consensus 351 aLrlL~NLSfd~~~R~~mV~~GlI-PkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 351 ALRLLFNLSFDPELRSQMVSLGLI-PKLVELLKD--PNFREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHHHHHHhCcCHHHHHHHHHCCCc-HHHHHHhCC--CchHHHHHHHHHHhccCHhhHHH
Confidence 999999999999999999955555 777777654 44556678888888888766544
No 131
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=86.84 E-value=0.39 Score=31.01 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=5.8
Q ss_pred CCcEEEcCCCCCCcc
Q 000712 175 TVTAVSLCGLGLSAL 189 (1336)
Q Consensus 175 ~L~~L~Ls~N~L~~l 189 (1336)
+|+.|+|++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555554444
No 132
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.57 E-value=2 Score=55.47 Aligned_cols=160 Identities=19% Similarity=0.242 Sum_probs=117.8
Q ss_pred CCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHH
Q 000712 379 SDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKL 458 (1336)
Q Consensus 379 s~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~ 458 (1336)
++|..+.......|..|.-...+-..+...+++..+..++++.....+..++..|.||+|..+ ++..+...++++.|..
T Consensus 301 r~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 301 RENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVE 379 (708)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHH
Confidence 456555555555666666555566677788999999999999988888889999999997765 4788999999999999
Q ss_pred HHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHH-hccCCChhhHHHHHHHHHHhccchhhhHhhcCCCCCC
Q 000712 459 LCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMR-LTVGPEPRVNKAAARALAILGENESLRRAIRGRQVPK 537 (1336)
Q Consensus 459 l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~-l~~s~~~~v~~~a~~~La~Lgen~~lRr~i~~~~~~~ 537 (1336)
++... ..+..++..+.+++.+.+.|..+...+.+ +.+.+ +....++++...+.+.+..|..++..-+.+.
T Consensus 380 LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcI-p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~------ 450 (708)
T PF05804_consen 380 LLKDP--NFREVALKILYNLSMDDEARSMFAYTDCI-PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMC------ 450 (708)
T ss_pred HhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchH-HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHH------
Confidence 98754 35566889999998888888877766666 55555 4455677777767777777777764444322
Q ss_pred CCceEEEecCCchhHHHHH
Q 000712 538 QGLRILSMDGGGMKGLATV 556 (1336)
Q Consensus 538 ~~~rILsLDGGGiRGl~~l 556 (1336)
.|||.+.++..
T Consensus 451 --------~g~gL~~L~~r 461 (708)
T PF05804_consen 451 --------EGNGLQSLMKR 461 (708)
T ss_pred --------hcCcHHHHHHH
Confidence 67887766543
No 133
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.75 E-value=0.3 Score=57.79 Aligned_cols=174 Identities=16% Similarity=0.057 Sum_probs=109.5
Q ss_pred hCCCCCCcEEEeeCCC-CCCCC-cccccCCCCcCEEeCCCCCCCCC-CCCccccCCCCCcEEEcCCCC-CCccc-ccc-C
Q 000712 121 VKRREPLRAVVLTKGV-GSGHL-SDGIGVLTRLMRSDLSTSGPGNN-MGSGFCDHWKTVTAVSLCGLG-LSALP-VDL-T 194 (1336)
Q Consensus 121 l~~l~~L~~L~Ls~N~-l~~~~-p~~l~~L~~L~~L~Ls~N~l~~~-~~~~~~~~L~~L~~L~Ls~N~-L~~lp-~~l-~ 194 (1336)
-..+..+..+++..+. ++..- -..-..+..|++|+.+++...+. .......+..+|+.|-|+.|+ ++..- ..+ .
T Consensus 264 ~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 3455667777766653 33321 11123578899999988853322 233344677899999999887 44221 112 3
Q ss_pred CCCCCcEEEcCCCCCC---CCccccCCCCCCcEEEccCCcCc-c-----ccccccCCCCCCEEEeccccccCCc--cccC
Q 000712 195 RLPVLEKLYLDNNKLS---TLPPELGAMKNLKVLIVDNNMLV-C-----VPVELRECVGLVELSLEHNRLVRPL--LDFR 263 (1336)
Q Consensus 195 ~L~~L~~L~Ls~N~L~---~lp~~l~~L~~L~~L~Ls~N~L~-~-----lp~~l~~L~~L~~L~Ls~N~l~~~~--~~l~ 263 (1336)
+++.|+.|++..+.+. ++..--.+++.|+.|.|+++.+. . +...-..+..|+.|.|+++...... ..+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5788999999888765 23333367889999999988744 1 2333456778999999998764322 4577
Q ss_pred CCCCCcEEEccCCCCC---CC-CCCCCCCCCCEEE
Q 000712 264 AMAELKILRLFGNPLE---FL-PEILPLLKLRHLS 294 (1336)
Q Consensus 264 ~L~~L~~L~Ls~N~L~---~l-p~l~~l~~L~~L~ 294 (1336)
.+++|+.++|-+++-. .+ +.-.++++++..-
T Consensus 424 ~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred hCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 8889999998887633 11 1223555555443
No 134
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.60 E-value=0.49 Score=30.56 Aligned_cols=12 Identities=42% Similarity=0.531 Sum_probs=3.5
Q ss_pred CcEEEccCCcCc
Q 000712 222 LKVLIVDNNMLV 233 (1336)
Q Consensus 222 L~~L~Ls~N~L~ 233 (1336)
|+.|+|++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333333333333
No 135
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=85.31 E-value=0.44 Score=56.97 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=52.7
Q ss_pred hhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchh-hhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchh
Q 000712 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRI-LVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1336)
Q Consensus 447 l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~-~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~ 525 (1336)
+..+.++++-....+...+. ....++.+-.++|......+ +.++..+ ..|+.+....+++++.++..+++.++-.-.
T Consensus 283 l~k~~l~~pTe~v~~l~~~~-I~~l~~~v~~~~~~s~s~~Qe~~~K~~~-~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~ 360 (763)
T KOG4231|consen 283 LMKCDLMKPTETVLKLSSPD-IISLLQVVVTLAFVSDSVSQEMLTKDML-KALKSLCAHKNPELQRQALLAVGNLAFCLE 360 (763)
T ss_pred HHHHHhcCcchhhhhhcccc-HhhHHHHHhcCCchhhhHHhhhhHHHHH-HHHHHHhcccChHHHHHHHHHHHHheeccc
Confidence 33444444444333333333 24456667778887766655 5566666 889999999999999999999888886643
Q ss_pred hh
Q 000712 526 LR 527 (1336)
Q Consensus 526 lR 527 (1336)
.|
T Consensus 361 ~r 362 (763)
T KOG4231|consen 361 NR 362 (763)
T ss_pred cc
Confidence 33
No 136
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=80.36 E-value=9.8 Score=44.07 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=110.2
Q ss_pred CcchhHHHhhhhccCccChhh-hcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHH
Q 000712 381 NRHVVEQACSALSSLAGDVSV-AMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLL 459 (1336)
Q Consensus 381 N~~l~~~~~~~L~~Lp~~~~~-l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l 459 (1336)
+..+..++.=+|+++..+... ..-....+.+--++.+|.+...+..-+...+|.+.+-.+...+--++..++|.+|-.+
T Consensus 128 ~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~l 207 (526)
T COG5064 128 RDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGL 207 (526)
T ss_pred hhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHH
Confidence 334555666788888865443 3446677888888899999999988899999999999999999999999999999888
Q ss_pred HhcCCh--hhhhHHHhhhcccccccccchhhh--chhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhh
Q 000712 460 CAHKNP--EVQRFALLAVGNLAFCLENRRILV--TSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLR 527 (1336)
Q Consensus 460 ~~~~~~--~Vq~~aL~al~~laf~~e~r~~~~--~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lR 527 (1336)
..+..+ ...+.+...+.|| |--.+.++-- -+..+ +.|..+-.+.++++-..|+|++.++...++-.
T Consensus 208 l~ss~~~ismlRn~TWtLSNl-cRGknP~P~w~~isqal-piL~KLiys~D~evlvDA~WAiSYlsDg~~E~ 277 (526)
T COG5064 208 LLSSAIHISMLRNATWTLSNL-CRGKNPPPDWSNISQAL-PILAKLIYSRDPEVLVDACWAISYLSDGPNEK 277 (526)
T ss_pred HHhccchHHHHHHhHHHHHHh-hCCCCCCCchHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHH
Confidence 887766 5556666666666 3333333311 13345 88899999999999999999999998876544
No 137
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.54 E-value=1.4 Score=31.46 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=10.0
Q ss_pred CCCcEEEcCCCCCCccccc
Q 000712 174 KTVTAVSLCGLGLSALPVD 192 (1336)
Q Consensus 174 ~~L~~L~Ls~N~L~~lp~~ 192 (1336)
++|++|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 138
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.54 E-value=1.4 Score=31.46 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=10.0
Q ss_pred CCCcEEEcCCCCCCccccc
Q 000712 174 KTVTAVSLCGLGLSALPVD 192 (1336)
Q Consensus 174 ~~L~~L~Ls~N~L~~lp~~ 192 (1336)
++|++|+|++|+|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4455555555555555543
No 139
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=79.04 E-value=3.2 Score=51.46 Aligned_cols=73 Identities=16% Similarity=0.134 Sum_probs=55.3
Q ss_pred CceEEEecCCchhHHH-HHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc-cCCHHHHHHHHHHhccccccC
Q 000712 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTLDQCEEIYKNLGKLVFAE 614 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~-~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~-~~s~~e~~~~y~~l~~~IF~~ 614 (1336)
+...+++.|||.|.+. .+|.|.++.+. .+.+...||+|.|-|+-+...|... .++-.++.+...++.+.++..
T Consensus 53 P~Igia~SGGGyRAml~gaG~l~al~~~---GLLq~~tYlaGlSGg~Wl~gSLy~npn~ss~dl~~~iw~l~~~i~~~ 127 (541)
T cd07201 53 PVVAVMTTGGGTRALTSMYGSLLGLQKL---GLLDCVSYITGLSGSTWTMATLYEDPNWSQKDLEGPIEEARKHVTKS 127 (541)
T ss_pred CeEEEEecCccHHHHHhccHHHHhhhcC---CchhhhheecccCccHHHHHHHHcCCCCchhhHHHHHHHHHhhhccc
Confidence 4677999999999886 78999999774 4778899999999999985555554 566666666555555555543
No 140
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=76.88 E-value=1.8 Score=30.82 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=7.7
Q ss_pred CCcEEEccCCcCccccc
Q 000712 221 NLKVLIVDNNMLVCVPV 237 (1336)
Q Consensus 221 ~L~~L~Ls~N~L~~lp~ 237 (1336)
+|+.|+|++|+|+.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 141
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=76.88 E-value=1.8 Score=30.82 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=7.7
Q ss_pred CCcEEEccCCcCccccc
Q 000712 221 NLKVLIVDNNMLVCVPV 237 (1336)
Q Consensus 221 ~L~~L~Ls~N~L~~lp~ 237 (1336)
+|+.|+|++|+|+.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44444444444444443
No 142
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=76.73 E-value=4 Score=39.63 Aligned_cols=77 Identities=29% Similarity=0.265 Sum_probs=59.9
Q ss_pred hchHHHHHHHHHHhcCChhhhhHHHhhhcccccc-cccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchh
Q 000712 448 LTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFC-LENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1336)
Q Consensus 448 ~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~-~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~ 525 (1336)
...+.++.|..++.+.++.++..++.++++++.. .+.+..++..+.+ +.|..+....++++++.+.++|..+..+..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i-~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGL-PALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCh-HHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 3455677888888888899999999999999765 3444445543444 777888888899999999999999987763
No 143
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.78 E-value=4.9 Score=49.72 Aligned_cols=110 Identities=21% Similarity=0.266 Sum_probs=87.9
Q ss_pred hHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhh
Q 000712 414 IIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSES 493 (1336)
Q Consensus 414 ~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~ 493 (1336)
+...+.+.+.+.....+.+++.|+=.++.....+...++.+.|..++.+..+.++..+|.++||.+...+...+.+-.-+
T Consensus 242 L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 242 LLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSG 321 (514)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcC
Confidence 34566677777777788888888877888888889999999999999999999999999999999888887777553334
Q ss_pred HHHHHHHhcc-CCChhhHHHHHHHHHHhccc
Q 000712 494 LRDLLMRLTV-GPEPRVNKAAARALAILGEN 523 (1336)
Q Consensus 494 L~~~L~~l~~-s~~~~v~~~a~~~La~Lgen 523 (1336)
+.+.|..+.. +....+++.|+|.+..++..
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG 352 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAG 352 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcC
Confidence 3377777666 66667999999999776643
No 144
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=75.32 E-value=4.5 Score=34.26 Aligned_cols=54 Identities=31% Similarity=0.219 Sum_probs=40.5
Q ss_pred hhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHH
Q 000712 465 PEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAI 519 (1336)
Q Consensus 465 ~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~ 519 (1336)
|+|+..++.++|+++........-. ...+.+.|..+....++.|+.+|+++|..
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 5788899999999875555444444 23444888888888888999999998864
No 145
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVA cPLA2, an 85 kDa protein, consists of two domains: the regulatory C2 domain and the alpha/beta hydrolase PLA2 domain. Group IVA cPLA2 is also referred to as cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (cPLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile
Probab=72.33 E-value=5.1 Score=49.73 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.4
Q ss_pred CCceEEEecCCchhHHH-HHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc-cCCH---HHHHH
Q 000712 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK-LMTL---DQCEE 602 (1336)
Q Consensus 538 ~~~rILsLDGGGiRGl~-~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~-~~s~---~e~~~ 602 (1336)
-+...+++.|||.|.+. -+|+|+++.+. .+.+...|++|.|-|+-+-..|... .++- +++.+
T Consensus 43 ~P~Iaia~SGGGyRAMl~gaG~l~Ald~g---GLLq~aTYlaGLSGgsWlvgsl~~n~nf~sv~~~~l~~ 109 (505)
T cd07200 43 VPVIALLGSGGGFRAMVGMSGAMKALYDS---GVLDCATYVAGLSGSTWYMSTLYSHPDFPEKGPGEINK 109 (505)
T ss_pred CCeEEEEecCccHHHHhhccHHHHhhhcC---ChhhhhhhhhcCCccHHHHHHHHhCCCCCccCHHHHHH
Confidence 35677999999999887 78999999883 4778899999999999765555443 4543 55543
No 146
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.86 E-value=0.42 Score=51.70 Aligned_cols=79 Identities=14% Similarity=0.031 Sum_probs=38.7
Q ss_pred CcEEEeeCCCCCCCCcccccCCCCcCEEeCCCCCCCCCC-CCccccCCCCCcEEEcCCCC-CCccc-cccCCCCCCcEEE
Q 000712 127 LRAVVLTKGVGSGHLSDGIGVLTRLMRSDLSTSGPGNNM-GSGFCDHWKTVTAVSLCGLG-LSALP-VDLTRLPVLEKLY 203 (1336)
Q Consensus 127 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~-L~~lp-~~l~~L~~L~~L~ 203 (1336)
++.++-+++.|...--+.+.+++.|+.|.+.+|+..... ....-+-.++|+.|+|++|. ||+-- ..+.++++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 456666666665544455666666666666666532221 11111233556666666554 44211 2334445555544
Q ss_pred cC
Q 000712 204 LD 205 (1336)
Q Consensus 204 Ls 205 (1336)
|.
T Consensus 183 l~ 184 (221)
T KOG3864|consen 183 LY 184 (221)
T ss_pred hc
Confidence 43
No 147
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=70.66 E-value=13 Score=38.96 Aligned_cols=55 Identities=31% Similarity=0.633 Sum_probs=34.6
Q ss_pred ChHHHHHHHHhccccEEE-EecCCCCCHHHHHHHHhcCCcEEEcCCCCcCCcccceecC
Q 000712 1181 TPDDVRWMIGAWRERIII-CTGTYGPTPPVVKAFLDSGAKAVVCPSAEPQEMSLTSFHG 1238 (1336)
Q Consensus 1181 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1238 (1336)
+|+++-| +.+.=.||| |||+| ....-.+..+++|||.||...-...+...+...|
T Consensus 78 dp~~i~W--~~~gvDiVvEcTG~f-~~~~~~~~hl~~GakkViisap~~~~~~~t~V~G 133 (151)
T PF00044_consen 78 DPEEIPW--GELGVDIVVECTGKF-RTRENAEAHLDAGAKKVIISAPSKDDADPTFVMG 133 (151)
T ss_dssp SGGGSTH--HHHTESEEEETSSST-HSHHHHTHHHHTTESEEEESSS-SSSSSEEE-TT
T ss_pred hhccccc--ccccccEEEeccccc-eecccccccccccccceeeccccccccCCeEEee
Confidence 4777777 333334444 89974 5666777899999999998544333324544444
No 148
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=66.75 E-value=6.7 Score=39.32 Aligned_cols=49 Identities=27% Similarity=0.446 Sum_probs=41.3
Q ss_pred CCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCC
Q 000712 1178 MHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
.-|+++|+.+++..==+=|||.||.++ +|+.+.+++.+.|....+-++.
T Consensus 44 ~~l~~~~l~~ll~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~ 95 (117)
T cd05126 44 HGLQPEELEELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTE 95 (117)
T ss_pred ccCCHHHHHHHHhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChH
Confidence 368999999999776788999999995 4899999999999888775554
No 149
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=66.01 E-value=35 Score=43.10 Aligned_cols=209 Identities=17% Similarity=0.171 Sum_probs=132.1
Q ss_pred cCCCcchhHHHhhhhccCccC-hhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHH
Q 000712 378 SSDNRHVVEQACSALSSLAGD-VSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSL 456 (1336)
Q Consensus 378 Ls~N~~l~~~~~~~L~~Lp~~-~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L 456 (1336)
-..++.+...++..|..+-.. -.....+..-++...++..+.+++..........|..++-. ......++..+.+..|
T Consensus 87 ~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L 165 (503)
T PF10508_consen 87 THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKL 165 (503)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHH
Confidence 345666777777766665432 22345567777888888899988888888888888888844 4444567777889999
Q ss_pred HHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchhhhHhhcCCCCC
Q 000712 457 KLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENESLRRAIRGRQVP 536 (1336)
Q Consensus 457 ~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~lRr~i~~~~~~ 536 (1336)
..++...+..++...+..+.+++-..+.-...+...++.+.+.......|.-++.++.+.+..++..+
T Consensus 166 ~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~------------ 233 (503)
T PF10508_consen 166 KSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP------------ 233 (503)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh------------
Confidence 99998878888888888888886444444444433344466666555588888999999998888754
Q ss_pred CCCceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcccCCHHHHHHHHHHhccccc
Q 000712 537 KQGLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVKLMTLDQCEEIYKNLGKLVF 612 (1336)
Q Consensus 537 ~~~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~~~s~~e~~~~y~~l~~~IF 612 (1336)
-|..-+...++++.|.+.+...-.+. -..+.=.-|.+.+.=.+..++..++.+.|..+...+|
T Consensus 234 -----------~g~~yL~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~ 296 (503)
T PF10508_consen 234 -----------HGLQYLEQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF 296 (503)
T ss_pred -----------hHHHHHHhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 23555666666777655432111111 0111111122111101122367778888887777777
No 150
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=65.28 E-value=22 Score=35.16 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=57.4
Q ss_pred cceeEEcceEEeeeccceeEecCCccceehhhhccCCCCCCChHHHHHHHHhccccEEEEecCCC--CCHHHHHHHHhcC
Q 000712 1140 RPYFQVGNVVHRYIGRQTQVMEDDHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRERIIICTGTYG--PTPPVVKAFLDSG 1217 (1336)
Q Consensus 1140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 1217 (1336)
.-.|.|+|..|+ |.-+.-.++.+..+.-++ + .-|+++++.++...==+=|||.||.++ ||+.+.++|.+.|
T Consensus 7 ~g~~~i~g~~y~----~sviv~p~~~~~~w~~~~--~-~~l~~e~l~~l~~~~peiliiGTG~~~~~~~~~~~~~l~~~g 79 (109)
T cd05560 7 DGYVEINDQRYE----HSLIVTPDELITDWPVAR--F-EDLTAAHFEALLALQPEVILLGTGERQRFPPPALLAPLLARG 79 (109)
T ss_pred CCEEEECCEEEe----cCEEEECCceeeccccCC--c-ccCCHHHHHHHHhcCCCEEEEecCCCCCcCCHHHHHHHHHcC
Confidence 346888888774 112221122222233333 2 379999999998765578899999986 7889999999999
Q ss_pred CcEEEcCCCCcC
Q 000712 1218 AKAVVCPSAEPQ 1229 (1336)
Q Consensus 1218 ~~~~~~~~~~~~ 1229 (1336)
....+.++.++-
T Consensus 80 i~vE~m~T~~Ac 91 (109)
T cd05560 80 IGVEVMDTQAAC 91 (109)
T ss_pred CeEEEECHHHHH
Confidence 999998886543
No 151
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3.1.1.5 from EC and cytosolic phospholipase A2 which also has a C2 domain IPR000008 from INTERPRO. Phospholipase B enzymes catalyse the release of fatty acids from lysophsopholipids and are capable in vitro of hydrolyzing all phospholipids extractable from yeast cells []. Cytosolic phospholipase A2 associates with natural membranes in response to physiological increases in Ca2+ and selectively hydrolyses arachidonyl phospholipids [], the aligned region corresponds the carboxy-terminal Ca2+-independent catalytic domain of the protein as discussed in [].; GO: 0004620 phospholipase activity, 0009395 phospholipid catabolic process; PDB: 1CJY_B.
Probab=65.14 E-value=8.8 Score=48.03 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=33.7
Q ss_pred EEEecCCchhHHH-HHHHHHHHHHhcC-----CCcccccceEEeechHHHHHHHHH
Q 000712 542 ILSMDGGGMKGLA-TVQILKEIEKGTG-----KRIHELFDLVCGTSTGGMLAIALA 591 (1336)
Q Consensus 542 ILsLDGGGiRGl~-~l~iL~~Le~~~g-----~~i~~~FDlIaGTStGgIiA~~La 591 (1336)
.|++.|||.|.+. .+|+|.++..+.. ..+.+..++++|.|-|+-+-..|+
T Consensus 2 aia~SGGG~RAml~gaG~l~Ald~R~~~~~~~gGLLq~~tY~sGlSGgsW~~~sl~ 57 (491)
T PF01735_consen 2 AIAGSGGGYRAMLAGAGVLSALDSRNPGANGTGGLLQCATYISGLSGGSWLVGSLY 57 (491)
T ss_dssp EEEE---HHHHHHHHHHHHHHHH--------HCS-GGGECEEEE-HHHHHHHHHH-
T ss_pred eEEecCchHHHHHHHHHHHHHhhhhccccccccchhhhhhhhhhcCcchhhhhhhh
Confidence 3789999999875 8999999994321 147789999999999988766664
No 152
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.91 E-value=9.4 Score=46.32 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=29.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Q 000712 1286 VWDDEEEELSQFICHLYDFLFREGARVDAALQKALA 1321 (1336)
Q Consensus 1286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1321 (1336)
.|-.|.+.=+..|..||+.|=..+.+...||++|-.
T Consensus 359 LW~VdD~sTa~LM~eFY~~L~~~~~~kA~ALrqAQl 394 (420)
T COG4995 359 LWSVDDESTAALMTEFYRKLQQAQLTKAEALRQAQL 394 (420)
T ss_pred eeeeCcHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 344555555679999999999889999999999854
No 153
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.01 E-value=6.6 Score=31.22 Aligned_cols=38 Identities=34% Similarity=0.372 Sum_probs=32.7
Q ss_pred hHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccc
Q 000712 442 TVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (1336)
Q Consensus 442 ~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~la 479 (1336)
.....+...+.++.|..++.+.++.+|..++.+++|++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34456677889999999999999999999999999873
No 154
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=62.60 E-value=17 Score=41.46 Aligned_cols=153 Identities=19% Similarity=0.140 Sum_probs=100.9
Q ss_pred cccccccCcEEEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhhhcCC-ChhhHhhhhhhhhccccccchHH
Q 000712 366 DENAVRQLISMISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSF-APEEVKSVLQVVGQLAFASDTVA 444 (1336)
Q Consensus 366 ~l~~L~~L~~L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~-~~~~~~~~l~~L~~L~~~~~~i~ 444 (1336)
.++.++-+..+--..++.+...+..+|..+..........+. .+.+-+...+..+ +...+..+++.|.+|+...+..
T Consensus 52 ~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~- 129 (254)
T PF04826_consen 52 DLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH- 129 (254)
T ss_pred HcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh-
Confidence 445566666665666777777777788888776655555443 3444444444433 4556789999999999665442
Q ss_pred HhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhcc-CCChhhHHHHHHHHHHhccc
Q 000712 445 QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTV-GPEPRVNKAAARALAILGEN 523 (1336)
Q Consensus 445 ~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~-s~~~~v~~~a~~~La~Lgen 523 (1336)
.++.. .++.|-.+...++...|.++|+.+.||+.+....+.++..+.+ ..++.+-. ....++-..+...+..+.++
T Consensus 130 -~~l~~-~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~-~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 130 -HMLAN-YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVL-SSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred -hhHHh-hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccch-hHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 22322 4555667888899999999999999999999988888877766 44444444 34455555555555555444
No 155
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit. Cytosolic phospholipases A2 hydrolyse arachidonyl phospholipids. Family includes phospholipases B isoforms.
Probab=61.13 E-value=11 Score=47.39 Aligned_cols=59 Identities=22% Similarity=0.321 Sum_probs=47.0
Q ss_pred CCceEEEecCCchhHHH-HHHHHHHHHHhcC----CCcccccceEEeechHHHHHHHHHcccCC
Q 000712 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTG----KRIHELFDLVCGTSTGGMLAIALAVKLMT 596 (1336)
Q Consensus 538 ~~~rILsLDGGGiRGl~-~l~iL~~Le~~~g----~~i~~~FDlIaGTStGgIiA~~La~~~~s 596 (1336)
.+..-+++.|||.|.+. .+|+|.++.+++. ..+.+.-.+|+|.|-|+.+-..|+...++
T Consensus 75 ~P~Igia~SGGGyRAml~gaG~l~ald~R~~~~~lgGLLq~~tYlaGlSGgsWlv~sl~~nnf~ 138 (549)
T smart00022 75 VPVIAIAGSGGGFRAMVGGAGVLKAMDNRTDGHGLGGLLQSATYLAGLSGGTWLVGTLASNNFT 138 (549)
T ss_pred CceEEEEecCCCHHHHHhccHHHHHhhhcccccccccHhhhhhhhhccchHHHHHHHHhhCCCc
Confidence 34677999999999886 7899999998642 24668889999999999987777755444
No 156
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=60.02 E-value=25 Score=32.42 Aligned_cols=59 Identities=34% Similarity=0.447 Sum_probs=45.3
Q ss_pred HHHHHH-hcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccch
Q 000712 455 SLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENE 524 (1336)
Q Consensus 455 ~L~~l~-~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~ 524 (1336)
.|...+ .+.++.++..++..++++. .+...+.|.++....++.++..|..+|+.+|..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~ 62 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGDPE 62 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH
Confidence 344444 7899999999999999651 1233477777778999999999999999988654
No 157
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=58.91 E-value=52 Score=30.20 Aligned_cols=82 Identities=24% Similarity=0.334 Sum_probs=54.2
Q ss_pred Hhhh-cCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhh
Q 000712 415 IAVL-KSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSES 493 (1336)
Q Consensus 415 l~~L-~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~ 493 (1336)
+..+ .+.++.........+..+ ....+++.|..++.+.++.|+..++.+++.+. .+.
T Consensus 5 ~~~l~~~~~~~vr~~a~~~L~~~-----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------~~~ 62 (88)
T PF13646_consen 5 LQLLQNDPDPQVRAEAARALGEL-----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-----------DPE 62 (88)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHCC-----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------HHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHc-----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------CHH
Confidence 3444 455555555566665533 23467888888999999999999999999882 122
Q ss_pred HHHHHHHhcc-CCChhhHHHHHHHHH
Q 000712 494 LRDLLMRLTV-GPEPRVNKAAARALA 518 (1336)
Q Consensus 494 L~~~L~~l~~-s~~~~v~~~a~~~La 518 (1336)
..+.|.+... ..+..++..+..+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3356666444 455666888877764
No 158
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.93 E-value=2.5 Score=45.98 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=16.9
Q ss_pred CCCcEEEccCCC-CC--CCCCCCCCCCCCEEEccC
Q 000712 266 AELKILRLFGNP-LE--FLPEILPLLKLRHLSLAN 297 (1336)
Q Consensus 266 ~~L~~L~Ls~N~-L~--~lp~l~~l~~L~~L~Ls~ 297 (1336)
++|+.|+|++|. |+ .+..+..+++|+.|.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 456666666553 44 233444555555555543
No 159
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=55.78 E-value=12 Score=37.42 Aligned_cols=34 Identities=12% Similarity=0.266 Sum_probs=25.8
Q ss_pred cccEEEEecCCC-CCHHHHHHHHhcCCcEEEcCCC
Q 000712 1193 RERIIICTGTYG-PTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1193 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+||||||...-. .-..-++...++||++||....
T Consensus 51 ~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~ 85 (126)
T cd02120 51 KGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILAND 85 (126)
T ss_pred cccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEec
Confidence 799999986432 2246678888999999998543
No 160
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=55.38 E-value=13 Score=43.08 Aligned_cols=104 Identities=18% Similarity=0.223 Sum_probs=77.4
Q ss_pred hcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHH
Q 000712 418 LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDL 497 (1336)
Q Consensus 418 L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~ 497 (1336)
+-+-+++.+...+.+++-|.=.++.-...++..+++++|.+++.+....+|.-++..+||...-.+...+.+-.-+.-..
T Consensus 252 iys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 252 IYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred HhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 33455666666776666555456666777888899999999999999999999999999998777766664433332255
Q ss_pred HHHhccCCChhhHHHHHHHHHHhc
Q 000712 498 LMRLTVGPEPRVNKAAARALAILG 521 (1336)
Q Consensus 498 L~~l~~s~~~~v~~~a~~~La~Lg 521 (1336)
+.-+..++...+++.|||.+..+.
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNIT 355 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNIT 355 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccc
Confidence 556667777799999999987654
No 161
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.44 E-value=7.8 Score=28.11 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=8.3
Q ss_pred CCcEEEcCCCCCCccc
Q 000712 175 TVTAVSLCGLGLSALP 190 (1336)
Q Consensus 175 ~L~~L~Ls~N~L~~lp 190 (1336)
+|+.|++++|+|+.+|
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 3455555555555554
No 162
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=53.20 E-value=8.6 Score=27.91 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=9.8
Q ss_pred CCcEEEcCCCCCCCCcc
Q 000712 198 VLEKLYLDNNKLSTLPP 214 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~~lp~ 214 (1336)
+|+.|++++|+|+.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45566666666665553
No 163
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=51.66 E-value=8.4 Score=48.06 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=45.9
Q ss_pred CCceEEEecCCchhHHH-HHHHHHHHHHhcCC----CcccccceEEeechHHHHHHHHHcccCCH
Q 000712 538 QGLRILSMDGGGMKGLA-TVQILKEIEKGTGK----RIHELFDLVCGTSTGGMLAIALAVKLMTL 597 (1336)
Q Consensus 538 ~~~rILsLDGGGiRGl~-~l~iL~~Le~~~g~----~i~~~FDlIaGTStGgIiA~~La~~~~s~ 597 (1336)
.++-.++..|||.|.+. -.|+|.+|.++.+- .+.+..+||+|.|-|.-+-.-|+....+.
T Consensus 47 ~P~vaIa~SGGG~RAMl~g~G~Laamder~~~~~l~GLLqs~tYlaGlSGstW~vssLa~nn~~s 111 (571)
T KOG1325|consen 47 GPVVGIAGSGGGLRAMLSGAGALAAMDERTDNAGLGGLLQSATYLAGLSGGSWLVSSLAVNNFTS 111 (571)
T ss_pred CCeEEEEecCCCHHHHhhhhHHHHHHHhhccCCcccchhhhhhhhcccCCCceeeeeeEECCchH
Confidence 45667889999999987 57899999886321 36788999999999988776676554433
No 164
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.67 E-value=12 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=5.3
Q ss_pred CCCEEEccCCCCC
Q 000712 289 KLRHLSLANIRIV 301 (1336)
Q Consensus 289 ~L~~L~Ls~N~l~ 301 (1336)
+|+.|+|+.|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 3344444444443
No 165
>cd07203 cPLA2_Fungal_PLB Fungal Phospholipase B-like; cPLA2 GrpIVA homologs; catalytic domain. Fungal phospholipase B are Group IV cPLA2 homologs. Aspergillus PLA2 is Ca-dependent, yet it does not contain a C2 domain. PLB deacylates both sn-1 and sn-2 chains of phospholipids and are abundantly expressed in fungi. It shows lysophospholipase (lysoPL) and transacylase activities. The active site residues from cPLA2 are also conserved in PLB. Like cPLA2, PLB also has a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). It includes PLB1 from Schizosaccharomyces pombe, PLB2 from Candida glabrata, and PLB3 from Saccharomyces cerevisiae. PLB1, PLB2, and PLB3 show PLB and lysoPL activities; PLB3 is specific for phosphoinositides.
Probab=50.57 E-value=16 Score=45.85 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=48.1
Q ss_pred CceEEEecCCchhHHH-HHHHHHHHHHhcC-------CCcccccceEEeechHHHHHHHHHcccC-CHHHHH
Q 000712 539 GLRILSMDGGGMKGLA-TVQILKEIEKGTG-------KRIHELFDLVCGTSTGGMLAIALAVKLM-TLDQCE 601 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~-~l~iL~~Le~~~g-------~~i~~~FDlIaGTStGgIiA~~La~~~~-s~~e~~ 601 (1336)
+..-+++.|||.|.+. -+|+|.++..++. ..+.+.-.+|+|.|-|+-+-..|+...+ +++++.
T Consensus 63 P~Igia~SGGGyRAMl~GaG~l~AlD~Rt~~~~~~glgGLLQsatYlaGLSGGsWlvgSl~~Nnf~sv~~l~ 134 (552)
T cd07203 63 PRIGIAVSGGGYRAMLTGAGAIAAMDNRTDNATEHGLGGLLQSSTYLSGLSGGSWLVGSLASNNFTSVQDLL 134 (552)
T ss_pred CeEEEEecCccHHHHHhccHHHHhhhcccccccccccccHHHHhhHhhhcCccchhhhhhhhCCCCCHHHHh
Confidence 4677999999999886 7899999987531 1466788999999999988777765444 456554
No 166
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=49.71 E-value=19 Score=36.11 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=30.0
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCCc
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAEP 1228 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1336)
||||++|.-.-++...-+++-.++||++||.-..++
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~ 78 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSD 78 (122)
T ss_pred CCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 899999986656777788899999999999865443
No 167
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.52 E-value=6.9 Score=48.40 Aligned_cols=62 Identities=26% Similarity=0.271 Sum_probs=36.8
Q ss_pred CCCCCCcEEEccCCcCcccc---ccccCCCCCCEEEeccc--cccCCc--cccCCCCCCcEEEccCCCCC
Q 000712 217 GAMKNLKVLIVDNNMLVCVP---VELRECVGLVELSLEHN--RLVRPL--LDFRAMAELKILRLFGNPLE 279 (1336)
Q Consensus 217 ~~L~~L~~L~Ls~N~L~~lp---~~l~~L~~L~~L~Ls~N--~l~~~~--~~l~~L~~L~~L~Ls~N~L~ 279 (1336)
.+.+.+..|+|++|+|..+- .--...++|+.|+|++| .+.... ..++. ..|++|.|.+|+|.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKG-LPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcC-CCHHHeeecCCccc
Confidence 45566777777777766332 12234567788888887 443322 12222 35778888888875
No 168
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=48.55 E-value=14 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=13.7
Q ss_pred CCCCcEEEccCCCCCCCC
Q 000712 265 MAELKILRLFGNPLEFLP 282 (1336)
Q Consensus 265 L~~L~~L~Ls~N~L~~lp 282 (1336)
+++|+.|+|++|+|+.+.
T Consensus 1 L~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 1 LTNLEELDLSQNKIKKIE 18 (26)
T ss_pred CCccCEEECCCCccceec
Confidence 467888888888887553
No 169
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=48.21 E-value=19 Score=35.78 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=26.4
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCC
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+||||||....+....-++.-.++||++||.-..
T Consensus 46 ~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~ 79 (126)
T cd00538 46 KGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNN 79 (126)
T ss_pred cceEEEEECCCcCHHHHHHHHHHCCCEEEEEEEC
Confidence 8999999864444456677888999999998543
No 170
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=47.52 E-value=30 Score=33.94 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=45.2
Q ss_pred CCCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCCCc
Q 000712 1177 SMHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSAEP 1228 (1336)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1336)
|-.|.+++++.+.-.=-+.|||.||.|| +.+...+-|.+-||+.++.|.-|+
T Consensus 46 SHkl~~eEle~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EA 100 (121)
T COG1504 46 SHKLALEELEELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEA 100 (121)
T ss_pred ccccCHHHHHHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHH
Confidence 4568999999999988999999999998 466777889999999999998664
No 171
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=46.51 E-value=21 Score=42.60 Aligned_cols=42 Identities=31% Similarity=0.548 Sum_probs=31.0
Q ss_pred CChHHHHHHHHhccccEEE-EecCCCCCHHHHHHHHhcCCcEEEcC
Q 000712 1180 LTPDDVRWMIGAWRERIII-CTGTYGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
=+|.++-| +.+-=.||| |||.| .......+-|++|||.||..
T Consensus 93 ~dP~~ipW--~~~gvD~ViE~TG~f-~t~~~a~~Hl~~GAKkViiS 135 (361)
T PTZ00434 93 RNPADLPW--GKLGVDYVIESTGLF-TDKLAAEGHLKGGAKKVVIS 135 (361)
T ss_pred CChhhCch--hhcCCCEEEeCceee-ccHHHHhhhhhcCCCEEEEC
Confidence 36778877 334444666 99997 45566788999999999974
No 172
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=44.94 E-value=40 Score=40.77 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc
Q 000712 558 ILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 558 iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~ 593 (1336)
.+.++.+.++. +.+-.++|.|+||.+|+.++..
T Consensus 135 ~~~~~l~~l~~---~~~~~lvG~S~Gg~ia~~~a~~ 167 (379)
T PRK00175 135 AQARLLDALGI---TRLAAVVGGSMGGMQALEWAID 167 (379)
T ss_pred HHHHHHHHhCC---CCceEEEEECHHHHHHHHHHHh
Confidence 44444455543 2222799999999999999864
No 173
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=42.98 E-value=50 Score=39.32 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCCCCceEEEec--C--CchhH-------------------H-HHHHHHHHHHHhcCCCcccccceEEeechHHHHHHH
Q 000712 534 QVPKQGLRILSMD--G--GGMKG-------------------L-ATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIA 589 (1336)
Q Consensus 534 ~~~~~~~rILsLD--G--GGiRG-------------------l-~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~ 589 (1336)
+...++++|+++| | +|.-+ + -.+..+..+.+.+|.. .+=.++|.|+||++|..
T Consensus 67 ~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~l~G~S~Gg~ia~~ 143 (351)
T TIGR01392 67 AIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIE---QIAAVVGGSMGGMQALE 143 (351)
T ss_pred CcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCC---CceEEEEECHHHHHHHH
Confidence 3335679999999 4 43222 1 1233344444555532 11258999999999999
Q ss_pred HHcc
Q 000712 590 LAVK 593 (1336)
Q Consensus 590 La~~ 593 (1336)
++..
T Consensus 144 ~a~~ 147 (351)
T TIGR01392 144 WAID 147 (351)
T ss_pred HHHH
Confidence 9754
No 174
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.09 E-value=11 Score=46.61 Aligned_cols=61 Identities=21% Similarity=0.188 Sum_probs=27.7
Q ss_pred CCCcEEEccCCCCCCCCCCC----CCCCCCEEEccCC--CCCCCcccccccccccCCCCCeeccCCCCCcc
Q 000712 266 AELKILRLFGNPLEFLPEIL----PLLKLRHLSLANI--RIVADENLRSVNVQIEMENNSYFGASRHKLSA 330 (1336)
Q Consensus 266 ~~L~~L~Ls~N~L~~lp~l~----~l~~L~~L~Ls~N--~l~~~~~L~~L~~~l~L~~L~~L~ls~N~L~~ 330 (1336)
+.+..++|++|+|..+..+. ..++|+.|+|++| .+....++..+. ...|+.|-+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k----~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLK----GLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhc----CCCHHHeeecCCcccc
Confidence 34444445555544333222 2345555666655 333333333211 2335555566666554
No 175
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=41.53 E-value=26 Score=33.32 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1189 IGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
-...+|+||||.-....-.+-++.-.++||++||.-.
T Consensus 29 ~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~ 65 (101)
T PF02225_consen 29 GSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYN 65 (101)
T ss_dssp TSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-
T ss_pred CccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEe
Confidence 3457999999964333447777888899999999988
No 176
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=41.33 E-value=42 Score=33.77 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=54.1
Q ss_pred hHHHHHHHHHH-hcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHh
Q 000712 450 KDVLKSLKLLC-AHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAIL 520 (1336)
Q Consensus 450 ~~lL~~L~~l~-~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~L 520 (1336)
-.+++.|..++ .+.++.+..-++..+|.+.-..++-..++..-+.++.++++..+.+++|+..|..++..+
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35788888877 556777777788889988755566666666777889999999999999999988877543
No 177
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=39.53 E-value=23 Score=38.86 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=42.0
Q ss_pred CCccceehhhhccC--------CCCCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCC
Q 000712 1162 DDHEIAAYMFRRTV--------PSMHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1162 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+-.+.|-|+|.-.= |...|....++ .++|||+--.|| .=+.-+.|+.++|-+|||++|.
T Consensus 34 ~~~~l~~~~f~~~r~~~~~~~~p~F~ln~~~~~------~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SF 103 (200)
T PRK01641 34 TRTGFGKGLFDDWRYLDDGQPNPDFVLNQPRYQ------GASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSF 103 (200)
T ss_pred CHHHHHHhhhccccccccCCCCCCccccccccC------CCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechH
Confidence 44677888887432 55555444433 468999865554 4567899999999999999995
No 178
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=39.09 E-value=36 Score=33.83 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=26.5
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCC
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+||||+|....+...+-+++..++||++||.-..
T Consensus 40 ~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 40 AGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 7999999864444456788889999999998543
No 179
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=38.52 E-value=33 Score=35.49 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=25.7
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
+||||+|.-.-+...+-++...++||++||.=.
T Consensus 47 ~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n 79 (143)
T cd02133 47 KGKIALIQRGEITFVEKIANAKAAGAVGVIIYN 79 (143)
T ss_pred cceEEEEECCCCCHHHHHHHHHHCCCeEEEEee
Confidence 799999974334446678888999999999843
No 180
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=38.04 E-value=15 Score=25.65 Aligned_cols=14 Identities=29% Similarity=0.444 Sum_probs=6.7
Q ss_pred CCCCEEEecccccc
Q 000712 243 VGLVELSLEHNRLV 256 (1336)
Q Consensus 243 ~~L~~L~Ls~N~l~ 256 (1336)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45556666665554
No 181
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=37.96 E-value=38 Score=35.44 Aligned_cols=42 Identities=26% Similarity=0.594 Sum_probs=27.5
Q ss_pred ChHHHHHHHHhcc-ccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1181 TPDDVRWMIGAWR-ERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
+|.++-| +.|- |=+|=|||+|+-.. -.+..|++|||.||...
T Consensus 77 ~p~~~~w--~~~gvDiVie~tG~f~~~~-~~~~hl~~GakkViisa 119 (149)
T smart00846 77 DPANLPW--KELGVDIVVECTGKFTTRE-KASAHLKAGAKKVIISA 119 (149)
T ss_pred ChHHCcc--cccCCeEEEeccccccchH-HHHHHHHcCCCEEEeCC
Confidence 4555554 2222 44445999876555 45678999999999844
No 182
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=36.74 E-value=41 Score=26.64 Aligned_cols=37 Identities=32% Similarity=0.521 Sum_probs=28.6
Q ss_pred cchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhc
Q 000712 484 NRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1336)
Q Consensus 484 ~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lg 521 (1336)
++..++....+ +.|.++..+.++++++.++++|..+.
T Consensus 4 ~~~~i~~~g~i-~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGI-PPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHH-HHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccH-HHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34445544445 88899999999999999999998764
No 183
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=35.99 E-value=33 Score=35.13 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHhcc---ccEEEEe-cCC---CCCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1189 IGAWR---ERIIICT-GTY---GPTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1189 ~~~~~---~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
...|| +.|||+. -.| ..-+.-++|+.+.|.+|||++|.+
T Consensus 66 ~~~~~~~~~~ilv~~g~nfG~GSSRE~A~~al~~~Gi~aVIA~SFa 111 (131)
T PF00694_consen 66 APRYKVEGGDILVVGGENFGCGSSREHAAWALKDLGIRAVIAESFA 111 (131)
T ss_dssp HHHHHHTTTEEEEEE-SSBTBSS--THHHHHHHHTTEEEEEESSB-
T ss_pred hhhhcccCCCEEEECCCcccCCcchHHHHHHHHHhCCeEEEechHH
Confidence 34555 6788876 223 356778999999999999999985
No 184
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=34.85 E-value=41 Score=34.05 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.7
Q ss_pred ccccEEEEecCCC--CCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1192 WRERIIICTGTYG--PTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1192 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
-+|||++...... ....-++...++||++||.-...
T Consensus 43 v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~ 80 (127)
T cd04819 43 LEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTV 80 (127)
T ss_pred CCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCC
Confidence 3999999886322 22567999999999999997543
No 185
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=34.26 E-value=59 Score=32.13 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=43.4
Q ss_pred CCChHHHHHHHHhc-cccEEEEecCCC--CCHHHHHHHHhcCCcEEEcCCCCcC
Q 000712 1179 HLTPDDVRWMIGAW-RERIIICTGTYG--PTPPVVKAFLDSGAKAVVCPSAEPQ 1229 (1336)
Q Consensus 1179 ~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 1229 (1336)
-+|++++.++...= =+=|||.||..+ |++.+.++|.+.|....+.++.++-
T Consensus 38 ~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAc 91 (109)
T cd00248 38 DLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAAC 91 (109)
T ss_pred cCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 69999999988764 578999999865 7889999999999999998886543
No 186
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=33.62 E-value=65 Score=39.03 Aligned_cols=43 Identities=19% Similarity=0.387 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcC
Q 000712 1179 HLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
.+|-||+.|+...|.+.|||-.= ....-++-.+++||++|++.
T Consensus 231 ~ltW~di~~lr~~~~~pvivKgV---~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVIKGI---LDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEEEec---CCHHHHHHHHhCCCCEEEEC
Confidence 47999999999999999988764 77888889999999999864
No 187
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=33.62 E-value=54 Score=24.40 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=23.0
Q ss_pred HHHHHHhccCCChhhHHHHHHHHHHhcc
Q 000712 495 RDLLMRLTVGPEPRVNKAAARALAILGE 522 (1336)
Q Consensus 495 ~~~L~~l~~s~~~~v~~~a~~~La~Lge 522 (1336)
.+.+.++....+++||.+|...+..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3677888899999999999999987764
No 188
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=33.45 E-value=49 Score=36.01 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=15.9
Q ss_pred ceEEeechHHHHHHHHH
Q 000712 575 DLVCGTSTGGMLAIALA 591 (1336)
Q Consensus 575 DlIaGTStGgIiA~~La 591 (1336)
.+++|+|.||..|..|+
T Consensus 61 ~~liGSSlGG~~A~~La 77 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLA 77 (187)
T ss_pred eEEEEEChHHHHHHHHH
Confidence 58999999999999996
No 189
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=33.25 E-value=52 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=36.7
Q ss_pred cCCCCCCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCCcCCc
Q 000712 1174 TVPSMHLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAEPQEM 1231 (1336)
Q Consensus 1174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1231 (1336)
.++ ||+++++. +|..||.| +|..|++++..-||+---.-..-|++-
T Consensus 23 ~v~--HLd~~~i~------~GD~ViGt----LPv~Laa~vc~kGa~y~~l~l~~p~e~ 68 (93)
T TIGR02620 23 FVD--HLDPIDIS------QGDKVIGT----LPVSLAADICKKGARYFELSLNVPASV 68 (93)
T ss_pred eec--ccCHHHhc------CCCEEEEe----CCHHHHHHHHhCCcEEEEEEccCChHH
Confidence 455 99999888 99999988 999999999999999755444444443
No 190
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=33.19 E-value=99 Score=36.68 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=31.6
Q ss_pred CCceEEEecC--Cc--h----hHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc
Q 000712 538 QGLRILSMDG--GG--M----KGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 538 ~~~rILsLDG--GG--i----RGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~ 593 (1336)
+++||+++|= .| . .-.-.+..|.++.+..+.. ..=.++|.|+||.||+.++..
T Consensus 98 ~~~~Vi~~Dl~G~g~s~~~~~~~~~~a~dl~~ll~~l~l~---~~~~lvG~SmGG~vA~~~A~~ 158 (343)
T PRK08775 98 ARFRLLAFDFIGADGSLDVPIDTADQADAIALLLDALGIA---RLHAFVGYSYGALVGLQFASR 158 (343)
T ss_pred cccEEEEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---cceEEEEECHHHHHHHHHHHH
Confidence 3577777773 22 0 0112344455555555531 112489999999999999864
No 191
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=33.04 E-value=36 Score=26.33 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=28.5
Q ss_pred HhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccc
Q 000712 445 QKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA 479 (1336)
Q Consensus 445 ~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~la 479 (1336)
..+...+.++.|..++.+.++.++..++.+++|++
T Consensus 6 ~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 6 QAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 33445567888888888889999999999999885
No 192
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.99 E-value=67 Score=38.66 Aligned_cols=42 Identities=24% Similarity=0.554 Sum_probs=37.1
Q ss_pred CChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcC
Q 000712 1180 LTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
++-+++.|+...|.+.|||. |- ....-++..+++||++|+..
T Consensus 223 ~~w~~i~~ir~~~~~pviiK-gV--~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLWPHKLLVK-GI--VTAEDAKRCIELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhCCCCEEEe-cC--CCHHHHHHHHHCCcCEEEEC
Confidence 67899999999999999999 43 67788888999999999875
No 193
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=32.92 E-value=47 Score=40.14 Aligned_cols=106 Identities=23% Similarity=0.357 Sum_probs=84.0
Q ss_pred HhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhcccc--cccccchhhhchhhHHHHHHHhcc
Q 000712 426 VKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLA--FCLENRRILVTSESLRDLLMRLTV 503 (1336)
Q Consensus 426 ~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~la--f~~e~r~~~~~se~L~~~L~~l~~ 503 (1336)
..+.+..+.++--.++.....+...+.+....-+|+...|.+.+++..+++|-+ -|-+..+.++.+... ++|.-++.
T Consensus 239 aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~-EWLF~LA~ 317 (832)
T KOG3678|consen 239 ARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAA-EWLFPLAF 317 (832)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhh-hhhhhhhc
Confidence 444555666666677888888877777777777899999999999999999976 455666667755444 89999999
Q ss_pred CCChhhHHHHHHHHHHhccchhhhHhhcC
Q 000712 504 GPEPRVNKAAARALAILGENESLRRAIRG 532 (1336)
Q Consensus 504 s~~~~v~~~a~~~La~Lgen~~lRr~i~~ 532 (1336)
+.+.-.+-.|+-+++.+..++.+.+.++.
T Consensus 318 skDel~R~~AClAV~vlat~KE~E~~Vrk 346 (832)
T KOG3678|consen 318 SKDELLRLHACLAVAVLATNKEVEREVRK 346 (832)
T ss_pred chHHHHHHHHHHHHhhhhhhhhhhHHHhh
Confidence 99998999999999999999877776653
No 194
>PRK09687 putative lyase; Provisional
Probab=32.76 E-value=2e+02 Score=33.42 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=67.3
Q ss_pred EEcCCCcchhHHHhhhhccCccChhhhcccccccCcchhHhh-hcCCChhhHhhhhhhhhccccccchHHHhhhchHHHH
Q 000712 376 MISSDNRHVVEQACSALSSLAGDVSVAMLLMKCDIMQPIIAV-LKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLK 454 (1336)
Q Consensus 376 L~Ls~N~~l~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~-L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~ 454 (1336)
|.-+.|+.+...+...|..|-..-... -.....+..+ +.++......+....|.++.-... .....+..
T Consensus 62 ll~~~d~~vR~~A~~aLg~lg~~~~~~-----~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-----~~~~~a~~ 131 (280)
T PRK09687 62 LCSSKNPIERDIGADILSQLGMAKRCQ-----DNVFNILNNLALEDKSACVRASAINATGHRCKKNP-----LYSPKIVE 131 (280)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccch-----HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-----ccchHHHH
Confidence 334556666666666677665210000 0001111222 344555545566677766641110 01223445
Q ss_pred HHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhc
Q 000712 455 SLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILG 521 (1336)
Q Consensus 455 ~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lg 521 (1336)
.|.....+.+++|+..+..+++.+. .+...+.|..+....++.++..|..+|+.++
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~~-----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVIN-----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhccC-----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 5655666777788888877777551 1122366666667777788888877777764
No 195
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=32.72 E-value=86 Score=38.55 Aligned_cols=204 Identities=15% Similarity=-0.049 Sum_probs=94.8
Q ss_pred CCCcEEEeeCCCCCCCCcccccCC---CCcCEEeCCCCCCCCCC--CCccccCCCCCcEEEcCCCCCC-----ccccc--
Q 000712 125 EPLRAVVLTKGVGSGHLSDGIGVL---TRLMRSDLSTSGPGNNM--GSGFCDHWKTVTAVSLCGLGLS-----ALPVD-- 192 (1336)
Q Consensus 125 ~~L~~L~Ls~N~l~~~~p~~l~~L---~~L~~L~Ls~N~l~~~~--~~~~~~~L~~L~~L~Ls~N~L~-----~lp~~-- 192 (1336)
..+.+++|+.|.....+|..+..+ .-|+.++.+...+.... -+..++.-++|...+++.|..+ +++..
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 356778888877776666544322 23555665554322211 1222344567777777777644 33322
Q ss_pred --cCCCCCCcEEEcCCCCCC--CCccccCCC-----CCCcEEEccCCcCc--cccccccCCCCCCEEEeccccccCCcc-
Q 000712 193 --LTRLPVLEKLYLDNNKLS--TLPPELGAM-----KNLKVLIVDNNMLV--CVPVELRECVGLVELSLEHNRLVRPLL- 260 (1336)
Q Consensus 193 --l~~L~~L~~L~Ls~N~L~--~lp~~l~~L-----~~L~~L~Ls~N~L~--~lp~~l~~L~~L~~L~Ls~N~l~~~~~- 260 (1336)
++.-.++ +|++.+++.. .++..+-.+ +.=-.++++.|... +.-..-.+-..+++|.+..|.+.+...
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 2233456 6666666544 222111000 11123344444433 111111112347777777777765542
Q ss_pred --ccCCCCCCcEEEccCCCCC---CCCCCC--------CCCCCCEEEccCCCCCC-CcccccccccccCCCCCeeccCCC
Q 000712 261 --DFRAMAELKILRLFGNPLE---FLPEIL--------PLLKLRHLSLANIRIVA-DENLRSVNVQIEMENNSYFGASRH 326 (1336)
Q Consensus 261 --~l~~L~~L~~L~Ls~N~L~---~lp~l~--------~l~~L~~L~Ls~N~l~~-~~~L~~L~~~l~L~~L~~L~ls~N 326 (1336)
.+..-+.++.+++..-.-. ..+... ..--+..+.++.|.+.. +.++.+ ....-..+..|++++|
T Consensus 373 vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in--~l~stqtl~kldisgn 450 (553)
T KOG4242|consen 373 VGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN--KLLSTQTLAKLDISGN 450 (553)
T ss_pred ccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH--hhccCcccccccccCC
Confidence 2344456666666543221 111000 11235566666666654 222211 1112345666677776
Q ss_pred CCccc
Q 000712 327 KLSAF 331 (1336)
Q Consensus 327 ~L~~~ 331 (1336)
.....
T Consensus 451 ~mgd~ 455 (553)
T KOG4242|consen 451 GMGDG 455 (553)
T ss_pred CcccC
Confidence 65543
No 196
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=32.68 E-value=1.3e+02 Score=36.44 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=75.8
Q ss_pred CcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhc-----CChhhhhHHHhhhccccccccc
Q 000712 410 IMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAH-----KNPEVQRFALLAVGNLAFCLEN 484 (1336)
Q Consensus 410 i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~-----~~~~Vq~~aL~al~~laf~~e~ 484 (1336)
+..+..+.++|.+......+.-++.|++ ..|.+.-.+..++.+..|.+.+.. +|-++|-..+.+++|+++--.+
T Consensus 316 ~l~~~~sw~~S~d~~l~t~g~LaigNfa-R~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 316 FLDFLESWFRSDDSNLITMGSLAIGNFA-RRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 5567778889999988888989999998 567777778888888888887654 5778999999999999999999
Q ss_pred chhhhchhhHHHHHHHhccCCCh
Q 000712 485 RRILVTSESLRDLLMRLTVGPEP 507 (1336)
Q Consensus 485 r~~~~~se~L~~~L~~l~~s~~~ 507 (1336)
++-++..+.....|..+.....|
T Consensus 395 ka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCc
Confidence 99988655444445555444444
No 197
>TIGR00171 leuD 3-isopropylmalate dehydratase, small subunit. Several pairs of archaeal proteins resemble the leuC and leuD pair in length and sequence but even more closely resemble the respective domains of homoaconitase, and their identity is uncertain. The candidate archaeal leuD proteins are not included in the seed alignment for this model and score below the trusted cutoff.
Probab=32.63 E-value=32 Score=37.41 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.7
Q ss_pred CCccceehhhhc----------cCCCCCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCC
Q 000712 1162 DDHEIAAYMFRR----------TVPSMHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1162 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+-+..|.|+|.- .-|...|..+.++ .+.|||+.-.+| .=+.-+-|+.+.|-+|||+||.
T Consensus 34 ~~~~l~~~~f~~~R~~~~~g~~~~p~F~ln~~~~~------~~~IlVaG~NFGcGSSREhA~~aL~~~Gi~aVIA~SF 105 (188)
T TIGR00171 34 TRTGFGKHLFFDWRFLDANGKEPNPDFVLNQPQYQ------GASILLARENFGCGSSREHAPWALDDYGFKVIIAPSF 105 (188)
T ss_pred CHHHHHHhccccccccccccCCCCcchhhcccccC------CCcEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechH
Confidence 455666677643 2244444444333 368998864444 4567899999999999999995
No 198
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=32.29 E-value=70 Score=38.37 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=36.8
Q ss_pred CChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcC
Q 000712 1180 LTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
+|.++++|+...|...|||= | -..+..++...++||++|++.
T Consensus 208 ~~~~~l~~lr~~~~~PvivK-g--v~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 208 LSPADIEFIAKISGLPVIVK-G--IQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CCHHHHHHHHHHhCCcEEEe-c--CCCHHHHHHHHHcCCCEEEEe
Confidence 79999999999999998876 4 367788899999999999885
No 199
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.87 E-value=64 Score=36.31 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=80.6
Q ss_pred CCcceeeeccc-----eEEEecCchhHHHHHHHhhhhhhhhhhccccccCccccccchhhhhhcccc-eeEEcceEEee-
Q 000712 1080 TVGSILSWQND-----VFVVAEPGEHADKFLQSVKSSLLSVMRSNRRKGASVLSNISTIADLIHFRP-YFQVGNVVHRY- 1152 (1336)
Q Consensus 1080 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 1152 (1336)
.+|-+.+|.+- ....-.|-+.|..|.++= .... -++.+.........++..+.++++..+ .++|||=+.+.
T Consensus 12 ~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G-~~~l-~i~dl~~~~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~ 89 (241)
T PRK13585 12 KGGKCVQLVQGEPGTETVSYGDPVEVAKRWVDAG-AETL-HLVDLDGAFEGERKNAEAIEKIIEAVGVPVQLGGGIRSAE 89 (241)
T ss_pred ECCeEEEeeccccCCceEECCCHHHHHHHHHHcC-CCEE-EEEechhhhcCCcccHHHHHHHHHHcCCcEEEcCCcCCHH
Confidence 35666666432 233457889999987732 1111 233333333334567788999988764 57887665543
Q ss_pred -eccceeEecCCccceehhhhccCCCCCCChHHHHHHHHhc-cccEEEEecCC--------------CCCHHHHHHHHhc
Q 000712 1153 -IGRQTQVMEDDHEIAAYMFRRTVPSMHLTPDDVRWMIGAW-RERIIICTGTY--------------GPTPPVVKAFLDS 1216 (1336)
Q Consensus 1153 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~ 1216 (1336)
+=+=...-.|+-.+|+.++.+ ++-+..++..- .++||++--.+ ..+..+++.+.+.
T Consensus 90 ~~~~~~~~Ga~~v~iGs~~~~~--------~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 90 DAASLLDLGVDRVILGTAAVEN--------PEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred HHHHHHHcCCCEEEEChHHhhC--------hHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 100000111344567777653 45555565555 67887764321 2678899999999
Q ss_pred CCcEEEcCCC
Q 000712 1217 GAKAVVCPSA 1226 (1336)
Q Consensus 1217 ~~~~~~~~~~ 1226 (1336)
||..|+.-..
T Consensus 162 G~~~i~~~~~ 171 (241)
T PRK13585 162 GAGSILFTNV 171 (241)
T ss_pred CCCEEEEEee
Confidence 9999986443
No 200
>PRK09687 putative lyase; Provisional
Probab=31.74 E-value=1.5e+02 Score=34.37 Aligned_cols=68 Identities=19% Similarity=0.229 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHh-ccCCChhhHHHHHHHHHHhcc
Q 000712 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRL-TVGPEPRVNKAAARALAILGE 522 (1336)
Q Consensus 449 ~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l-~~s~~~~v~~~a~~~La~Lge 522 (1336)
...+...+..++.+.++.++..+..+++.+....... .+.+ +.|..+ ....++.|+..|+.+|+.++.
T Consensus 52 ~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~-----~~a~-~~L~~l~~~D~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 52 GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQ-----DNVF-NILNNLALEDKSACVRASAINATGHRCK 120 (280)
T ss_pred cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccch-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHhcccc
Confidence 3456777788888999999999999999885422111 1223 555555 677888999999988887753
No 201
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=31.72 E-value=96 Score=39.47 Aligned_cols=137 Identities=18% Similarity=0.208 Sum_probs=104.9
Q ss_pred HHhhhhccCccChhhhc-ccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCCh
Q 000712 387 QACSALSSLAGDVSVAM-LLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNP 465 (1336)
Q Consensus 387 ~~~~~L~~Lp~~~~~l~-~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~ 465 (1336)
.+|.-+.++...+..++ .+..-|+...+..++..+..-.....+.++.|+...-.....+.+..+....|.+......+
T Consensus 396 aa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~ 475 (678)
T KOG1293|consen 396 AALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDF 475 (678)
T ss_pred HHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCc
Confidence 34444444444344342 27888888888888877776667778888888887777788888888999999999999999
Q ss_pred hhhhHHHhhhcccccccccchhhhc-hhhHHHHHHHhccCCChhhHHHHHHHHHHhccc
Q 000712 466 EVQRFALLAVGNLAFCLENRRILVT-SESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1336)
Q Consensus 466 ~Vq~~aL~al~~laf~~e~r~~~~~-se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen 523 (1336)
.+.+..+.++.++.|-.++.....+ +..-...+..+...+++.|+++....|..+..+
T Consensus 476 n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 476 NSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 9999999999999988876666432 334446778889999999999998888777666
No 202
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=31.54 E-value=71 Score=38.76 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1179 HLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
.+|-+++.|+...|...|||..- ....-++..+++||++||+.-
T Consensus 239 ~~tW~~i~~lr~~~~~pvivKgV---~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVLKGI---LHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEEecC---CCHHHHHHHHHCCCCEEEEcC
Confidence 47999999999999999999843 667778888999999999864
No 203
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=30.87 E-value=69 Score=30.68 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=38.9
Q ss_pred cCCCCCCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCCcCCccc
Q 000712 1174 TVPSMHLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAEPQEMSL 1233 (1336)
Q Consensus 1174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 (1336)
.++ ||++++++ +|.+||.| +|-.|++..-..||+..-....-|+|-.+
T Consensus 23 ~v~--Hld~~~i~------~GD~ViGt----LPvhLaA~vc~kGa~y~~L~l~lp~e~RG 70 (93)
T PF09652_consen 23 FVD--HLDPADIQ------PGDVVIGT----LPVHLAAEVCEKGARYYHLSLDLPAEQRG 70 (93)
T ss_pred eec--cCCHHHcc------CCCEEEEe----CcHHHHHHHHhCCcEEEEEEccCChHHcC
Confidence 555 99999998 89999988 99999999999999987755554554433
No 204
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=30.86 E-value=1e+02 Score=29.79 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=50.3
Q ss_pred hhchHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHH
Q 000712 447 MLTKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAAR 515 (1336)
Q Consensus 447 l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~ 515 (1336)
-....+++++-......+.+|+..+.+++.|++......-...+.+.+ +.|.++....+++|+..|.-
T Consensus 23 ~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF-~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 23 KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIF-DALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCchhHHHHHHH
Confidence 344567888888888999999999999999986443322222344445 88899999999999987743
No 205
>KOG4813 consensus Translation initiation factor eIF3, p35 subunit [Translation, ribosomal structure and biogenesis]
Probab=29.91 E-value=24 Score=39.06 Aligned_cols=13 Identities=38% Similarity=0.785 Sum_probs=6.2
Q ss_pred CCCCCCCCccccc
Q 000712 1268 VSDWEDSEPEKSG 1280 (1336)
Q Consensus 1268 ~~~~~~~~~~~~~ 1280 (1336)
-++|||.|.|++.
T Consensus 34 ~dsWeDdDeEk~~ 46 (248)
T KOG4813|consen 34 KDSWEDDDEEKKE 46 (248)
T ss_pred hcccccccccccc
Confidence 3445555554443
No 206
>PRK13604 luxD acyl transferase; Provisional
Probab=29.81 E-value=92 Score=36.66 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=30.5
Q ss_pred CCceEEEec--CC-c-hhH----------HH-HHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHc
Q 000712 538 QGLRILSMD--GG-G-MKG----------LA-TVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1336)
Q Consensus 538 ~~~rILsLD--GG-G-iRG----------l~-~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~ 592 (1336)
.|+.+|.+| || | .-| .. ...+++.+.+....+ =.+.|.|+||.+|.+.+.
T Consensus 63 ~G~~vLrfD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~~~~-----I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 63 NGFHVIRYDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRGINN-----LGLIAASLSARIAYEVIN 127 (307)
T ss_pred CCCEEEEecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcCCCc-----eEEEEECHHHHHHHHHhc
Confidence 467888888 43 3 222 22 234455555432223 368899999999877653
No 207
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=29.77 E-value=1e+02 Score=35.56 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=32.2
Q ss_pred CceEEEecCCch-h-------------HHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHc
Q 000712 539 GLRILSMDGGGM-K-------------GLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAV 592 (1336)
Q Consensus 539 ~~rILsLDGGGi-R-------------Gl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~ 592 (1336)
+++|+++|=+|. . |-....+|+.|.+..+..+.+ + .++|.|.||.+|..++.
T Consensus 66 ~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~-i-~lIGhSlGa~vAg~~a~ 131 (275)
T cd00707 66 DYNVIVVDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLEN-V-HLIGHSLGAHVAGFAGK 131 (275)
T ss_pred CCEEEEEECccccccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHH-E-EEEEecHHHHHHHHHHH
Confidence 588889883221 1 112245666666654433222 1 48899999999999974
No 208
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=29.09 E-value=1.1e+02 Score=25.70 Aligned_cols=50 Identities=26% Similarity=0.301 Sum_probs=36.6
Q ss_pred hhhhhhhccccccchHHHhhhchHHHHHHHHHHhcCChhhhhHHHhhhccc
Q 000712 428 SVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1336)
Q Consensus 428 ~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~~~~~~Vq~~aL~al~~l 478 (1336)
..+..|.+++......... ....+++.|..++.+.++.|+..+..+++++
T Consensus 6 ~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 6 AAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4455666665444444333 6677899999999999999999999999874
No 209
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=28.74 E-value=92 Score=32.83 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=60.5
Q ss_pred hHhhhhhhhhcccc-ccchHHHhhhchHHHHHHHHHHh--cCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHh
Q 000712 425 EVKSVLQVVGQLAF-ASDTVAQKMLTKDVLKSLKLLCA--HKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRL 501 (1336)
Q Consensus 425 ~~~~~l~~L~~L~~-~~~~i~~~l~~~~lL~~L~~l~~--~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l 501 (1336)
..+..+..+..+-- .++........++.++.+...+. ..+..+|..++..+..- +..++++..+.+.++ ++|+++
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aA-c~d~~~r~~I~~~~~-~~L~~~ 136 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAA-CIDKSCRTFISKNYV-SWLKEL 136 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHH-TTSHHHHHCCHHHCH-HHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHH-HccHHHHHHHHHHHH-HHHHHH
Confidence 34444444443332 34444555567889999998888 67777888777777655 788888888877777 999998
Q ss_pred c-cCCChh-hHHHHHHHH
Q 000712 502 T-VGPEPR-VNKAAARAL 517 (1336)
Q Consensus 502 ~-~s~~~~-v~~~a~~~L 517 (1336)
- .+.++. ++..|.-.|
T Consensus 137 ~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 137 YKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp TTTCC-HH-CHHHHHHHH
T ss_pred HccccchHHHHHHHHHHH
Confidence 8 566665 665554444
No 210
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=28.14 E-value=99 Score=37.32 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=39.5
Q ss_pred CCCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCCc
Q 000712 1178 MHLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAEP 1228 (1336)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1336)
-.+|-||+.|+...|...|||=-= ....-++...++||++|++.-..+
T Consensus 209 ~~~tW~di~wlr~~~~~PiivKgV---~~~~dA~~a~~~Gvd~I~VsnhGG 256 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILVKGV---LTGEDARIAIQAGAAGIIVSNHGA 256 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEeecC---CCHHHHHHHHHcCCCEEEECCCCC
Confidence 357999999999999999988543 456777788999999999877643
No 211
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=27.82 E-value=1.2e+02 Score=36.24 Aligned_cols=44 Identities=25% Similarity=0.490 Sum_probs=32.2
Q ss_pred CChHHHHHHHHhccccE-EEEecCCCCCHHHHHHHHhcCCcEEEcCCC
Q 000712 1180 LTPDDVRWMIGAWRERI-IICTGTYGPTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
.+|+++-|= .+.=.| |=|||.+ .......+.+++|||.|+....
T Consensus 79 ~dp~~~~W~--~~gvDiV~e~tG~f-~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 79 RNPLNLPWK--EWGIDLIIESTGVF-VTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred CCcccCChh--hcCCCEEEeccchh-hhHHHHHHHhhCCcEEEEeCCC
Confidence 578888873 233345 4589986 5666777889999999998864
No 212
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=27.54 E-value=94 Score=37.50 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=37.4
Q ss_pred CCCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1178 MHLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
-.+|.++++|+...|...|||= |- .....++...++|+++|++.-
T Consensus 213 ~~~~w~~i~~l~~~~~~PvivK-Gv--~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 213 QKLSPRDIEEIAGYSGLPVYVK-GP--QCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCCCHHHHHHHHHhcCCCEEEe-CC--CCHHHHHHHHHcCcCEEEECC
Confidence 3578899999999999999987 43 347788888999999997654
No 213
>PLN02965 Probable pheophorbidase
Probab=27.20 E-value=1e+02 Score=34.54 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=16.2
Q ss_pred eEEeechHHHHHHHHHcc
Q 000712 576 LVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 576 lIaGTStGgIiA~~La~~ 593 (1336)
+++|.|+||.||..++..
T Consensus 75 ~lvGhSmGG~ia~~~a~~ 92 (255)
T PLN02965 75 ILVGHSIGGGSVTEALCK 92 (255)
T ss_pred EEEecCcchHHHHHHHHh
Confidence 799999999999999854
No 214
>PRK11071 esterase YqiA; Provisional
Probab=27.15 E-value=1.5e+02 Score=32.18 Aligned_cols=50 Identities=16% Similarity=0.139 Sum_probs=31.4
Q ss_pred CceEEEecCCchhHHHHHHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc
Q 000712 539 GLRILSMDGGGMKGLATVQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 539 ~~rILsLDGGGiRGl~~l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~ 593 (1336)
++++++.|=-|- |--.+..+.++.+..+.+- =.++|.|.||.+|+.++..
T Consensus 32 ~~~v~~~dl~g~-~~~~~~~l~~l~~~~~~~~----~~lvG~S~Gg~~a~~~a~~ 81 (190)
T PRK11071 32 DIEMIVPQLPPY-PADAAELLESLVLEHGGDP----LGLVGSSLGGYYATWLSQC 81 (190)
T ss_pred CCeEEeCCCCCC-HHHHHHHHHHHHHHcCCCC----eEEEEECHHHHHHHHHHHH
Confidence 356666664442 2334455556555544221 2799999999999999754
No 215
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=26.97 E-value=68 Score=33.17 Aligned_cols=32 Identities=13% Similarity=0.272 Sum_probs=25.1
Q ss_pred cccEEEEecCCCCC--------------HHHHHHHHhcCCcEEEcCCC
Q 000712 1193 RERIIICTGTYGPT--------------PPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+|||||+-. |-| ..-++.-.++||++||.=..
T Consensus 49 kGKIVlv~~--g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d 94 (137)
T cd04820 49 KGKIVVVLS--GGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTT 94 (137)
T ss_pred CCeEEEEEc--CCCCccccccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 799999886 333 24688999999999987654
No 216
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=26.50 E-value=41 Score=35.45 Aligned_cols=57 Identities=23% Similarity=0.336 Sum_probs=42.3
Q ss_pred CCccceehhhhccCCCCCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1162 DDHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
+-++++-|+|...=|...+. ++ .+.|||+--.|| .=+.-+.|+.++|.+|||++|..
T Consensus 25 ~~~~l~~~~f~~~~p~f~~~---~~------~g~iiVaG~NFG~GSSRE~A~~al~~~Gi~aVIA~SFa 84 (154)
T TIGR02087 25 DPDELASHAMEGIDPEFAKK---VR------PGDVIVAGKNFGCGSSREQAALALKAAGIAAVIAESFA 84 (154)
T ss_pred CHHHHHhhccCcCCchhhhc---CC------CCcEEEcCCcccCCccHHHHHHHHHHhCCCEEEeehHH
Confidence 55778888888776665432 11 268999876665 34678899999999999999953
No 217
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.36 E-value=56 Score=31.29 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=28.0
Q ss_pred ccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1194 ERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1194 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
+.|||+--.|| .-+.-+.|+.+.|.||||+++..
T Consensus 18 ~~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa 54 (91)
T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFA 54 (91)
T ss_pred CCEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHH
Confidence 78999865554 45678899999999999999974
No 218
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=26.30 E-value=51 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=18.6
Q ss_pred cccCcEEEcCCCcchhHHHhhhhc
Q 000712 370 VRQLISMISSDNRHVVEQACSALS 393 (1336)
Q Consensus 370 L~~L~~L~Ls~N~~l~~~~~~~L~ 393 (1336)
.++|+.|+|++|+.+.+.+...|.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 368999999999987777665543
No 219
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=26.14 E-value=1.9e+02 Score=36.65 Aligned_cols=77 Identities=27% Similarity=0.325 Sum_probs=64.0
Q ss_pred chHHHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccchh
Q 000712 449 TKDVLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGENES 525 (1336)
Q Consensus 449 ~~~lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen~~ 525 (1336)
.......|+..+.+.++.|++.++.++++.+-..+....++....+...+.......+..+.+.|...|..++.++.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~ 151 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE 151 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch
Confidence 55677888889999999999999999999876666655666566666888888899999999999999999987653
No 220
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.03 E-value=58 Score=33.12 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=41.8
Q ss_pred CCccceehhhhccCCCCCCChHHHHHHHHhccccEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1162 DDHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRERIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
+-++++.|.|...-|... +.|+ .|.|||+--.|| .-+.-+-|+.++|-+|||++|..
T Consensus 23 ~~e~la~~~~e~~dp~f~---~~v~------~gdilVaG~nFG~GSSRE~A~~al~~~Gi~~VIA~SFa 82 (129)
T cd01674 23 TPEKMAEVCMENYDSEFS---TKTK------QGDILVSGFNFGTGSSREQAATALLAKGIPLVVSGSFG 82 (129)
T ss_pred CHHHHHHhhcccCCchhh---hcCC------CCCEEEeCCccCCCCcHHHHHHHHHHcCccEEEechHH
Confidence 447888888876655531 2222 689999865554 45678899999999999999963
No 221
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=25.72 E-value=76 Score=31.75 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=28.6
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
+|||++.--..+...+-++...++||++||.=...
T Consensus 44 ~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~ 78 (122)
T cd02130 44 AGNIALIERGECPFGDKSALAGAAGAAAAIIYNNV 78 (122)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 99999987655666778999999999999986543
No 222
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=25.31 E-value=67 Score=35.91 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCcccccceEEeechHHHHHHHHHcc
Q 000712 556 VQILKEIEKGTGKRIHELFDLVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 556 l~iL~~Le~~~g~~i~~~FDlIaGTStGgIiA~~La~~ 593 (1336)
=.++..|++..+... +. -.|+|.|+||..|+.++..
T Consensus 100 ~el~p~i~~~~~~~~-~~-~~i~G~S~GG~~Al~~~l~ 135 (251)
T PF00756_consen 100 EELIPYIEANYRTDP-DR-RAIAGHSMGGYGALYLALR 135 (251)
T ss_dssp THHHHHHHHHSSEEE-CC-EEEEEETHHHHHHHHHHHH
T ss_pred ccchhHHHHhccccc-ce-eEEeccCCCcHHHHHHHHh
Confidence 345556666654222 11 4899999999999999754
No 223
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.30 E-value=1.4e+02 Score=40.35 Aligned_cols=138 Identities=23% Similarity=0.201 Sum_probs=87.1
Q ss_pred hHHHhhhhccCccChhhhcccccccCcchhHhhhcCCChhhHhhhhhhhhccccccchHHHhhhchHHHHHHHHHHh-cC
Q 000712 385 VEQACSALSSLAGDVSVAMLLMKCDIMQPIIAVLKSFAPEEVKSVLQVVGQLAFASDTVAQKMLTKDVLKSLKLLCA-HK 463 (1336)
Q Consensus 385 ~~~~~~~L~~Lp~~~~~l~~L~~L~i~~~~l~~L~s~~~~~~~~~l~~L~~L~~~~~~i~~~l~~~~lL~~L~~l~~-~~ 463 (1336)
...+..+|+.+-++-.....=+--.+....++.+.++.+......+.++..++-.-....++-.+..+...|..... ..
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 33444456665554333222222334556667788888887778888887666444444444455555655555544 47
Q ss_pred ChhhhhHHHhhhcccc-cccccchhhhchhhHHH-HHHHhccCCChhhHHHHHHHHHHhccc
Q 000712 464 NPEVQRFALLAVGNLA-FCLENRRILVTSESLRD-LLMRLTVGPEPRVNKAAARALAILGEN 523 (1336)
Q Consensus 464 ~~~Vq~~aL~al~~la-f~~e~r~~~~~se~L~~-~L~~l~~s~~~~v~~~a~~~La~Lgen 523 (1336)
+++||.++..++-|+. +|....-.-. -.+++. .|..+.+++.+.+++.+..+++-.+..
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~A 505 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADA 505 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 8999999999988875 4544333322 234444 677889999999999998888766644
No 224
>PLN02535 glycolate oxidase
Probab=25.26 E-value=1.1e+02 Score=36.83 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=43.4
Q ss_pred CccceehhhhccCCCCCCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1163 DHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
+..++.|+-+..-| .+|-+|++|+...|...|||--= ..+.-++...++||++|++--
T Consensus 195 ~~~~~~~~~~~~~~--~~tW~~i~~lr~~~~~PvivKgV---~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 195 GSGLEAFASETFDA--SLSWKDIEWLRSITNLPILIKGV---LTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred cccHHHHHHhccCC--CCCHHHHHHHHhccCCCEEEecC---CCHHHHHHHHhcCCCEEEEeC
Confidence 34455565444434 57999999999999999888632 556668899999999998753
No 225
>PLN02979 glycolate oxidase
Probab=24.69 E-value=1.1e+02 Score=36.82 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCC
Q 000712 1179 HLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAE 1227 (1336)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1227 (1336)
.+|-+|++|+...|...|||=-- ....-++-..++||.+||+.-..
T Consensus 209 ~ltW~dl~wlr~~~~~PvivKgV---~~~~dA~~a~~~Gvd~I~VsnhG 254 (366)
T PLN02979 209 TLSWKDVQWLQTITKLPILVKGV---LTGEDARIAIQAGAAGIIVSNHG 254 (366)
T ss_pred CCCHHHHHHHHhccCCCEEeecC---CCHHHHHHHHhcCCCEEEECCCC
Confidence 58999999999999999988553 45666777889999999887653
No 226
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.68 E-value=56 Score=23.93 Aligned_cols=13 Identities=54% Similarity=0.654 Sum_probs=6.4
Q ss_pred CCcEEEcCCCCCC
Q 000712 198 VLEKLYLDNNKLS 210 (1336)
Q Consensus 198 ~L~~L~Ls~N~L~ 210 (1336)
+|++|+|++|.|.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 227
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.51 E-value=1.4e+02 Score=35.37 Aligned_cols=49 Identities=31% Similarity=0.504 Sum_probs=32.3
Q ss_pred CceEEEecCCchhH-------------HHHHHHHHHHHHhcCC-CcccccceEEeechHHHHHHHHHcc
Q 000712 539 GLRILSMDGGGMKG-------------LATVQILKEIEKGTGK-RIHELFDLVCGTSTGGMLAIALAVK 593 (1336)
Q Consensus 539 ~~rILsLDGGGiRG-------------l~~l~iL~~Le~~~g~-~i~~~FDlIaGTStGgIiA~~La~~ 593 (1336)
+++|+++|=.| .| .....+++++....+. ++ .++|.|.||++|+.+|..
T Consensus 86 ~~~v~aiDl~G-~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~-----~lvghS~Gg~va~~~Aa~ 148 (326)
T KOG1454|consen 86 GLRVLAIDLPG-HGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPV-----SLVGHSLGGIVALKAAAY 148 (326)
T ss_pred ceEEEEEecCC-CCcCCCCCCCCceehhHHHHHHHHHHHhhcCcce-----EEEEeCcHHHHHHHHHHh
Confidence 69999999555 22 2344455555444321 22 488999999999999854
No 228
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=24.46 E-value=61 Score=38.08 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=29.5
Q ss_pred ccccEEEEecC---CCCCHHHHHHHHhcCCcEEEcC
Q 000712 1192 WRERIIICTGT---YGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1192 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
++||++|=||+ .|.=-.++++|.++||+.|++.
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~~~ 42 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILVGT 42 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 68999999998 7888999999999999999853
No 229
>PRK04115 hypothetical protein; Provisional
Probab=24.46 E-value=87 Score=32.24 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=37.0
Q ss_pred hhHHHHHHHhhhhhhhhhhccccccCccccccchhhhhhc-ccceeEE-cceEEeee
Q 000712 1099 EHADKFLQSVKSSLLSVMRSNRRKGASVLSNISTIADLIH-FRPYFQV-GNVVHRYI 1153 (1336)
Q Consensus 1099 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~ 1153 (1336)
+.+++.++.-...+++.++.+|+ |+.||.. .+|++.+ ||.-|.+=
T Consensus 2 ~~~dkil~~ei~~iN~hlP~~rk----------tL~eLL~e~~P~i~lrdGs~h~~k 48 (137)
T PRK04115 2 DIVEKILKKEIRRVNSHLPRKRK----------TLCELLKEDKPHVILRDGSRHRIK 48 (137)
T ss_pred chHHHHHHHHHHHHHhhCcHHHH----------HHHHHHhCCCCeEEecCCceEEec
Confidence 34677777777778887877777 9999999 9999999 99999763
No 230
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=24.12 E-value=1.2e+02 Score=36.13 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=34.0
Q ss_pred hHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcC
Q 000712 1182 PDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
-++++|+-..|.+..||+.- =.++.-++.++++||.+|++-
T Consensus 138 i~~ik~ir~~~p~~~viaGN--V~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 138 VEFVKLVREAFPEHTIMAGN--VVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhhCCCCeEEEec--ccCHHHHHHHHHcCCCEEEEc
Confidence 37899999999999888874 367788889999999999543
No 231
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.45 E-value=56 Score=36.80 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=30.4
Q ss_pred HHhccccEEEEecCC---CCCHHHHHHHHhcCCcEEEcC
Q 000712 1189 IGAWRERIIICTGTY---GPTPPVVKAFLDSGAKAVVCP 1224 (1336)
Q Consensus 1189 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 1224 (1336)
-|-..||++|-||+. |.=..++++|++.|++.|++-
T Consensus 2 ~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 2 SGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred ccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEec
Confidence 355678999999975 788999999999999988763
No 232
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=22.90 E-value=83 Score=31.81 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=39.5
Q ss_pred CccceehhhhccCCCCCCChHHHHHHHHhccc-cEEEEecCCC---CCHHHHHHHHhcCCcEEEcCCCCc
Q 000712 1163 DHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRE-RIIICTGTYG---PTPPVVKAFLDSGAKAVVCPSAEP 1228 (1336)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1336)
-.+++.|+|.+.-|.. +. .+ .+.| .|||+--.|| .=+.-+.|+..+|.||||++|...
T Consensus 25 ~~~l~~~~f~~~~p~f------~~-~~-~~~~~~iiVaG~nFG~GSSRE~A~~al~~~Gi~aVIA~SFa~ 86 (121)
T cd01579 25 IPAISEFVFHRVDPTF------AE-RA-KAAGPGFIVGGENYGQGSSREHAALAPMYLGVRAVLAKSFAR 86 (121)
T ss_pred HHHHHHhhccCCCchH------Hh-hc-ccCCCeEEEcCCcCCCCccHHHHHHHHHHHCCCEEEEccHHH
Confidence 3678889998754433 21 22 1122 4888765554 456789999999999999999743
No 233
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=22.87 E-value=91 Score=37.19 Aligned_cols=43 Identities=28% Similarity=0.480 Sum_probs=32.1
Q ss_pred ChHHHHHHHHhccccE-EEEecCCCCCHHHHHHHHhcCCcEEEcCCC
Q 000712 1181 TPDDVRWMIGAWRERI-IICTGTYGPTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1181 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
+|.++-| +.+.=.| |-|||.+ .......+.+++|||.|+..+.
T Consensus 80 dp~~lpW--~~~gvDiVle~tG~~-~s~~~a~~~l~aGak~V~iSap 123 (337)
T PTZ00023 80 DPAAIPW--GKNGVDVVCESTGVF-LTKEKAQAHLKGGAKKVIMSAP 123 (337)
T ss_pred ChhhCCc--cccCCCEEEEecchh-cCHHHHHHHhhCCCEEEEeCCC
Confidence 6777777 2223234 5589986 7777888999999999999884
No 234
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=22.57 E-value=3e+02 Score=27.54 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=56.6
Q ss_pred ceeEEcceEEeeeccceeEecCCccceehhhhccCCCCCCChHHHHHHHHhccc--cEEEEecCC--CCCHHHHHHHHhc
Q 000712 1141 PYFQVGNVVHRYIGRQTQVMEDDHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRE--RIIICTGTY--GPTPPVVKAFLDS 1216 (1336)
Q Consensus 1141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~ 1216 (1336)
-.|.|+|..|+ |. .-++.+ ++-++= .-...-+|+|+...+...+-+ -|||.||.+ -+|+.+.++|.+.
T Consensus 9 ~~f~in~~~~~--gs-~iv~p~--~~~~W~---~~~~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~ 80 (114)
T cd05125 9 NGFRLNNNKVI--GS-GAILPK--EVFSWN---VSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL 80 (114)
T ss_pred CeEEECCEEEE--Ee-EEEccC--ceeccC---CCChhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHc
Confidence 46888887664 32 222222 222222 222457899999989888866 899999974 4788999999999
Q ss_pred CCcEEEcCCCCcC
Q 000712 1217 GAKAVVCPSAEPQ 1229 (1336)
Q Consensus 1217 ~~~~~~~~~~~~~ 1229 (1336)
|....+.++.++-
T Consensus 81 gi~vevm~T~~Ac 93 (114)
T cd05125 81 GIAVEVVDTRNAC 93 (114)
T ss_pred CCEEEEECHHHHH
Confidence 9999998886543
No 235
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=22.40 E-value=1.3e+02 Score=36.02 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHhccccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1179 HLTPDDVRWMIGAWRERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
.++.++++|+...|...|||..- ....-++...++||++|+..-
T Consensus 199 ~~~~~~i~~l~~~~~~PvivKgv---~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 199 TLTWDDIKWLRKHTKLPIVLKGV---QTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCCHHHHHHHHHhcCCcEEEEcC---CCHHHHHHHHHcCCCEEEEEC
Confidence 47899999999999999999954 356777788999999999753
No 236
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=21.91 E-value=92 Score=32.43 Aligned_cols=37 Identities=14% Similarity=0.157 Sum_probs=26.4
Q ss_pred ccccEEEEec------------------CCCCCHHHHHHHHhcCCcEEEcCCCCc
Q 000712 1192 WRERIIICTG------------------TYGPTPPVVKAFLDSGAKAVVCPSAEP 1228 (1336)
Q Consensus 1192 ~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1228 (1336)
.+|||||.-- .|+....-++.-.++||++||.=...+
T Consensus 46 VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 46 VKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred CCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCC
Confidence 5899999732 112244578889999999999766544
No 237
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.79 E-value=2.2e+02 Score=36.58 Aligned_cols=71 Identities=21% Similarity=0.402 Sum_probs=54.5
Q ss_pred HHHHHHHHHhcCChhhhhHHHhhhcccccccccchhhhchhhHHHHHHHhccCCChhhHHHHHHHHHHhccc
Q 000712 452 VLKSLKLLCAHKNPEVQRFALLAVGNLAFCLENRRILVTSESLRDLLMRLTVGPEPRVNKAAARALAILGEN 523 (1336)
Q Consensus 452 lL~~L~~l~~~~~~~Vq~~aL~al~~laf~~e~r~~~~~se~L~~~L~~l~~s~~~~v~~~a~~~La~Lgen 523 (1336)
.++++-.+.++..|-++..++..+-.+ .-..+.+..+.-+.+.+.|..++...+|+||+++++++.+|-+.
T Consensus 175 mipkfl~f~~h~spkiRs~A~~cvNq~-i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 175 MIPKFLQFFKHPSPKIRSHAVGCVNQF-IIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred hHHHHHHHHhCCChhHHHHHHhhhhhe-eecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence 356666688899999999998888766 44444455554444557888899999999999999999988766
No 238
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=21.41 E-value=1e+02 Score=36.62 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhcc-ccEEEEecCCCCCHHHHHHHHhcCCcEEEcCCCCcCCccc
Q 000712 1181 TPDDVRWMIGAWR-ERIIICTGTYGPTPPVVKAFLDSGAKAVVCPSAEPQEMSL 1233 (1336)
Q Consensus 1181 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1233 (1336)
+|+++-|- .+. |=+|-|||.+ .....+.+.+++|||.|+......++.+.
T Consensus 79 dp~~~~w~--~~gvDiVle~tG~f-~s~~~a~~hl~aGak~V~iSap~~~~vp~ 129 (331)
T PRK15425 79 DPANLKWD--EVGVDVVAEATGLF-LTDETARKHITAGAKKVVMTGPSKDNTPM 129 (331)
T ss_pred ChhhCccc--ccCCCEEEEecchh-hcHHHHHHHHHCCCEEEEeCCCCCCCCCE
Confidence 45666652 112 4456689986 66777888899999999988774333343
No 239
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=21.33 E-value=1.3e+02 Score=38.94 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=8.7
Q ss_pred cHHHHHHHhcCCCCC
Q 000712 746 QVWQAIRASSAAPYY 760 (1336)
Q Consensus 746 ~lwdA~RASSAAP~y 760 (1336)
-+|--+.+|.|-|+|
T Consensus 390 lL~n~vkdT~aE~yf 404 (1102)
T KOG1924|consen 390 LLANTVKDTGAEPYF 404 (1102)
T ss_pred HHHHhhhhccccchH
Confidence 355556666666554
No 240
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.96 E-value=1.9e+02 Score=32.27 Aligned_cols=81 Identities=21% Similarity=0.263 Sum_probs=58.1
Q ss_pred cccccCccccccchhhhhhcccceeEEcceEEeeeccceeEecCCccceehhhhccCCCCCCChHHHHHHHHhccccEEE
Q 000712 1119 NRRKGASVLSNISTIADLIHFRPYFQVGNVVHRYIGRQTQVMEDDHEIAAYMFRRTVPSMHLTPDDVRWMIGAWRERIII 1198 (1336)
Q Consensus 1119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1198 (1336)
+++.+--..+...|.+|+.+... . |-++=. ..|+..+.++.++.+.+.-.+-=++
T Consensus 105 ~~~~~i~~iPG~~T~~E~~~A~~-----------~---------Gad~vk-----lFPa~~~G~~~ik~l~~~~p~ip~~ 159 (213)
T PRK06552 105 CNLYQIPYLPGCMTVTEIVTALE-----------A---------GSEIVK-----LFPGSTLGPSFIKAIKGPLPQVNVM 159 (213)
T ss_pred HHHcCCCEECCcCCHHHHHHHHH-----------c---------CCCEEE-----ECCcccCCHHHHHHHhhhCCCCEEE
Confidence 34445556777778888776431 1 111111 2577778999999998888876788
Q ss_pred EecCCCCCHHHHHHHHhcCCcEEEcCCC
Q 000712 1199 CTGTYGPTPPVVKAFLDSGAKAVVCPSA 1226 (1336)
Q Consensus 1199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1226 (1336)
.|| |...+=++.|+++||.+|..-+.
T Consensus 160 atG--GI~~~N~~~~l~aGa~~vavgs~ 185 (213)
T PRK06552 160 VTG--GVNLDNVKDWFAAGADAVGIGGE 185 (213)
T ss_pred EEC--CCCHHHHHHHHHCCCcEEEEchH
Confidence 999 99999999999999999876554
No 241
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=20.79 E-value=1.1e+02 Score=30.92 Aligned_cols=33 Identities=12% Similarity=0.030 Sum_probs=26.5
Q ss_pred cccEEEEecCCCCCHHHHHHHHhcCCcEEEcCC
Q 000712 1193 RERIIICTGTYGPTPPVVKAFLDSGAKAVVCPS 1225 (1336)
Q Consensus 1193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1225 (1336)
||||+|....-+.-..-++.--++||++||.=.
T Consensus 40 ~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n 72 (126)
T cd02126 40 KGKIAIMERGDCMFVEKARRVQKAGAIGGIVID 72 (126)
T ss_pred CceEEEEECCCCcHHHHHHHHHHCCCcEEEEEE
Confidence 799999876545556778888999999999854
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=20.73 E-value=85 Score=23.33 Aligned_cols=27 Identities=30% Similarity=0.392 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChhhhhHHHhhhccc
Q 000712 452 VLKSLKLLCAHKNPEVQRFALLAVGNL 478 (1336)
Q Consensus 452 lL~~L~~l~~~~~~~Vq~~aL~al~~l 478 (1336)
+++.+..++.+.+++|+..++.+++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 466778889999999999999999876
No 243
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=20.01 E-value=1.2e+02 Score=36.76 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=75.7
Q ss_pred eeccceeEecCCccceehhhhccCCCCCCChHHHHHHHHh-------ccccEEEEecCCCC--------------CHHHH
Q 000712 1152 YIGRQTQVMEDDHEIAAYMFRRTVPSMHLTPDDVRWMIGA-------WRERIIICTGTYGP--------------TPPVV 1210 (1336)
Q Consensus 1152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------------~~~~~ 1210 (1336)
+.----||+-+|+=.| |||.|.+.+|.. =++|||+|-=--|| ...+|
T Consensus 43 iEAT~NQVdq~GGYTG------------mtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~li 110 (421)
T PRK15052 43 IEATSNQVNQFGGYTG------------MTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVELV 110 (421)
T ss_pred EEeccccccccCCcCC------------CCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHH
Confidence 4444558887766555 689988887733 24699999877788 67899
Q ss_pred HHHHhcCCcEE-EcCCCCcCCcccc------eecCC------Ccccccc---CCceeccccc-------ccccCCCCCCC
Q 000712 1211 KAFLDSGAKAV-VCPSAEPQEMSLT------SFHGS------GEFNVVE---NGRFEIGEEE-------AEDEDVEPSSP 1267 (1336)
Q Consensus 1211 ~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~------~~~~~~~---~~~~~~~~~~-------~~~~~~~~~~~ 1267 (1336)
+|.++||=+-. +=||+...+.+.. .-.+. +...... .=.|+||-|+ ++.++.++++|
T Consensus 111 ~ayV~AGF~kIHLD~Sm~ca~d~~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvIGTEvP~pGGa~~~~~~~~vT~~ 190 (421)
T PRK15052 111 KAYVRAGFSKIHLDASMSCADDPIPLAPETVAERAAVLCQAAESVATDCQREQLSYVIGTEVPVPGGEASAIQSVHVTRV 190 (421)
T ss_pred HHHHHcCCceEEecCCCCccCCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeccccCCCCcchhhccccCCCCH
Confidence 99999998765 4444443332221 00000 0111111 2249999886 33344433333
Q ss_pred CCCCCCCCcccccCcccCccchhhHHHHHHHHHHHHHHHhccch
Q 000712 1268 VSDWEDSEPEKSGEHLMGVWDDEEEELSQFICHLYDFLFREGAR 1311 (1336)
Q Consensus 1268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1311 (1336)
+....|+..+.+++-+.|..
T Consensus 191 ------------------------e~~~~ti~~h~~af~~~GL~ 210 (421)
T PRK15052 191 ------------------------EDAANTLRTHQKAFIARGLT 210 (421)
T ss_pred ------------------------HHHHHHHHHHHHHHHHcCch
Confidence 34567888888888887763
Done!