BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000713
(1335 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 210 bits (535), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 138/211 (65%), Gaps = 2/211 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
PT+ I+ + G VA+ G+VG GKS+LL+A+L E+ +G + + G AYV Q AWIQ
Sbjct: 19 PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQ 78
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
S+RENILFG ++ Y+ ++ C+L+ DLE+LP GD TEIGE+GVNLSGGQKQR+ L
Sbjct: 79 NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSL 138
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA--LSGKVVLLVTHQVDFLPAFDSV 821
ARA+Y +ADIYL DDP SAVDAH +F + + L K +LVTH + +LP D +
Sbjct: 139 ARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVI 198
Query: 822 LLMSDGEILRAAPYHQLLASSKEFQELVSAH 852
++MS G+I Y +LLA F E + +
Sbjct: 199 IVMSGGKISEMGSYQELLARDGAFAEFLRTY 229
Score = 37.7 bits (86), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 1247 RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE 1306
R D P L GI+ + G + +VG+ G GK++L AL ++ G + + G +A +
Sbjct: 15 RSDPP-TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQ 73
Query: 1307 PMELMK---REGSLFG-QLVKEYW 1326
+ RE LFG QL + Y+
Sbjct: 74 QAWIQNDSLRENILFGCQLEEPYY 97
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+FG D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI L
Sbjct: 112 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 824 MSDGEILRAAPYHQLLASSKEF 845
+ G + +L + +F
Sbjct: 232 LHQGSSYFYGTFSELQSLRPDF 253
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL---AEYDEPME 1309
VLK I+ E G + I G TGSGKT+L + +E + G I G++ +++ M
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 1310 LMKREGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 113 GTIKENIIFGVSYDEY 128
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 126/202 (62%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+FG D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI L
Sbjct: 112 PGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 824 MSDGEILRAAPYHQLLASSKEF 845
+ G + +L + +F
Sbjct: 232 LHQGSSYFYGTFSELQSLRPDF 253
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL---AEYDEPME 1309
VLK I+ E G + I G TGSGKT+L + +E + G I G++ +++ M
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMP 112
Query: 1310 LMKREGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 113 GTIKENIIFGVSYDEY 128
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 119/184 (64%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI L
Sbjct: 112 PGTIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 824 MSDG 827
+ G
Sbjct: 232 LHQG 235
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + I G TGSGKT+L + +E + G I G+++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS 102
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 119/184 (64%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI L
Sbjct: 112 PGTIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 231
Query: 824 MSDG 827
+ G
Sbjct: 232 LHQG 235
Score = 34.7 bits (78), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + I G TGSGKT+L + +E + G I G+++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS 102
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 159 bits (403), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 120/184 (65%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+FG D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 82 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 141
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 142 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 201
Query: 824 MSDG 827
+ +G
Sbjct: 202 LHEG 205
Score = 38.5 bits (88), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL---AEYDEPME 1309
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G++ +++ M
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 82
Query: 1310 LMKREGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 83 GTIKENIIFGVSYDEY 98
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 159 bits (403), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 120/184 (65%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 34 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 93
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+FG D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 94 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 153
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 154 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 213
Query: 824 MSDG 827
+ +G
Sbjct: 214 LHEG 217
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL---AEYDEPME 1309
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G++ +++ M
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 94
Query: 1310 LMKREGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 95 GTIKENIIFGVSYDEY 110
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 78/202 (38%), Positives = 125/202 (61%), Gaps = 1/202 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P ++NI+L + G+ +AI G GSGK++LL ILGE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DNT +GE GV LSGGQ+ RI L
Sbjct: 112 PGTIKENII-GVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISL 170
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILI 230
Query: 824 MSDGEILRAAPYHQLLASSKEF 845
+ G + +L + +F
Sbjct: 231 LHQGSSYFYGTFSELQSLRPDF 252
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + I G TGSGKT+L + +E + G I G+++
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVS 102
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 119/184 (64%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 112 PGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 824 MSDG 827
+ +G
Sbjct: 232 LHEG 235
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 153 bits (387), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 69/184 (37%), Positives = 119/184 (64%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+FG D ++Y+ ++ C L +D+ DN +GE G+ LS GQ+ +I L
Sbjct: 112 PGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 171
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 172 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 231
Query: 824 MSDG 827
+ +G
Sbjct: 232 LHEG 235
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL---AEYDEPME 1309
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G++ +++ M
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMP 112
Query: 1310 LMKREGSLFGQLVKEY 1325
+E +FG EY
Sbjct: 113 GTIKENIIFGVSYDEY 128
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 153 bits (386), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 824 MSDG 827
+ +G
Sbjct: 231 LHEG 234
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 153 bits (386), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 170
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 824 MSDG 827
+ +G
Sbjct: 231 LHEG 234
Score = 38.1 bits (87), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 119/184 (64%), Gaps = 1/184 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 22 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 81
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DN +GE G+ LSGGQ+ RI L
Sbjct: 82 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISL 140
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 141 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 200
Query: 824 MSDG 827
+ +G
Sbjct: 201 LHEG 204
Score = 37.7 bits (86), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 72
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 148 bits (374), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 180/742 (24%), Positives = 323/742 (43%), Gaps = 119/742 (16%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691
P +R ++L V GQ VA+ G G GKST+++ +L +G I + G
Sbjct: 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491
Query: 692 -KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLI---KDLELLPYGDNTEIG 747
A VSQ + +I ENI G + +E + C + K ++ LP G NT +G
Sbjct: 492 KNVAVVSQEPALFNCTIEENISLGK--EGITREEMVAACKMANAEKFIKTLPNGYNTLVG 549
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
+RG LSGGQKQRI +ARAL ++ I LLD+ SA+DA + + + +A G+ ++
Sbjct: 550 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAES-EGIVQQALDKAAKGRTTII 608
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPS 867
+ H++ + D ++ +G+++ + L+A + +LV+A T + AE S
Sbjct: 609 IAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFS 668
Query: 868 QKSGMPAKEIKKGHVEKQF----------------EVSKGDQLIKQEERETGDIGLKPYI 911
+++ + + + + +Q ++ G + ++EER G L
Sbjct: 669 RENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEER-IGKDALSRLK 727
Query: 912 QYLNQNKG-------------------FLFFSIASLSHLTFVIGQILQNSWLAANVENP- 951
Q L +N F+ S A++ + + S++ NP
Sbjct: 728 QELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA 787
Query: 952 ------NVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMS 1005
+ L +V+ G S FLM + +GI +S+SL L N LFR +S
Sbjct: 788 DFLSQGHFWALMFLVLAAAQGICS--FLM-----TFFMGI-ASESLTRDLRNKLFRNVLS 839
Query: 1006 ----FYDS--TPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQV- 1058
F+DS G+I +R+++D+ + I F + + + +G+ WQ+
Sbjct: 840 QHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899
Query: 1059 -LFVSI-PVIFLA--IRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE 1114
L ++I P++ +R +R+ K + K + E+I T++A E
Sbjct: 900 LLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAI-----EAIENVRTVQALARE 954
Query: 1115 DRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSAT----VISSAAFCM----VLLPP 1166
D F+ + +D H A E IQ L A+ ++++ A+ M ++ P
Sbjct: 955 DTFYENFCEKLDIP-----HKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDP 1009
Query: 1167 GTFTPGFIGMALSYGLSLNSSLVMSIQN------QCTLANYII-SVERLNQYMHVPSEAP 1219
T P + + + Y +++++S + + + T A II + R + S A
Sbjct: 1010 PTMQPMRV-LRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG 1068
Query: 1220 EVVEDNRPPPNWPVVGKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGK 1277
E + GKV +++ Y P+ P +LKG+S + E G + +VG +G GK
Sbjct: 1069 E---------KKKLYGKVIFKNVRFAY-PERPEIEILKGLSFSVEPGQTLALVGPSGCGK 1118
Query: 1278 TTLRGALFRLIEPARGKILVDG 1299
+T+ L R + G+I +DG
Sbjct: 1119 STVVALLERFYDTLGGEIFIDG 1140
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 29/226 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLA-------AILGEV------------PHTQGT 686
++ +S V PGQ +A+ G G GKST++A + GE+ HT+
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 687 IQVYGKTAYVSQTAWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDN 743
I A VSQ + SI ENI++G S + Q +E ++ + LP G
Sbjct: 1155 I------AIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFE 1208
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
T +G+RG LSGGQKQRI +ARAL ++ I LLD+ SA+D + + + + A G+
Sbjct: 1209 TRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EKVVQEALDRAREGR 1267
Query: 804 VVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
+++ H+++ + D + ++S+G I+ + QL++ + +L
Sbjct: 1268 TCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLT 1313
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 1230 NWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRL 1287
+ + G + + ++ Y RPD P +L+G++ G + +VG +G GK+T+ L R
Sbjct: 409 DMKIKGDITVENVHFTYPSRPDVP-ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY 467
Query: 1288 IEPARGKILVDG 1299
+ +GKI +DG
Sbjct: 468 YDVLKGKITIDG 479
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 146 bits (369), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 118/184 (64%), Gaps = 1/184 (0%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703
P +++I+ ++ GQ +A+ G G+GK++LL I+GE+ ++G I+ G+ ++ SQ +WI
Sbjct: 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIM 111
Query: 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
G+I+ENI+ G D ++Y+ ++ C L +D+ DN +GE G+ LS GQ+ +I L
Sbjct: 112 PGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISL 170
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823
ARA+Y+DAD+YLLD PF +D T +F V + ++ K +LVT +++ L D +L+
Sbjct: 171 ARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230
Query: 824 MSDG 827
+ +G
Sbjct: 231 LHEG 234
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLA 1302
VLK I+ E G + + G TG+GKT+L + +EP+ GKI G+++
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRIS 102
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 162/716 (22%), Positives = 303/716 (42%), Gaps = 87/716 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------ 693
++ ++L+V+ GQ VA+ G G GKST + + G + + G+
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 694 -AYVSQTAWIQTGSIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
VSQ + +I ENI +G + + ++ ++ + + LP+ +T +GERG
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQKQRI +ARAL ++ I LLD+ SA+D + ++ + +A G+ +++ H+
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHR 584
Query: 812 V------DFLPAFDSVLLMSDG---EILR-AAPYHQLLASSKEFQELVSAHKETAGSERL 861
+ D + FD +++ G E++R Y +L+ + E+ ++ + +
Sbjct: 585 LSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEI 644
Query: 862 AEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEERETGDIGLKP----YIQYLNQN 917
+ S K + I++ K DQ K +E D + P I LN
Sbjct: 645 DNLDMSSKDS-GSSLIRRRSTRKSI-CGPHDQDRKLSTKEALDEDVPPASFWRILKLNST 702
Query: 918 KGFLFFSIASLSHL-------------TFVIGQILQNSWLAANVENPNVSTLRLIVVYLL 964
+ + +F + + + V+G +N N+ +L ++L+
Sbjct: 703 E-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL----LFLI 757
Query: 965 IGFVS--TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRILSRVS 1020
+G +S T FL + G +K L + S+ R +S++D G + +R++
Sbjct: 758 LGIISFITFFLQGFTFGKA--GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLA 815
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLA--IRLQRY 1075
+D + V L N + + + + WQ +L +P+I +A + ++
Sbjct: 816 NDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKML 875
Query: 1076 YFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF---FAKNLDLIDTNASPF 1132
K+ L G+ K +A E+I T+ + E +F +A++L + NA
Sbjct: 876 SGQALKDKKELEGSGK--IAT---EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 1133 FHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLV--- 1189
H F Q + S +AAF G + M L + S++V
Sbjct: 931 AHVFGITFSFTQAMMYFS----YAAAFRF-----GAYLVTQQLMTFENVLLVFSAIVFGA 981
Query: 1190 MSIQNQCTLA-NYIISVERLNQYMHVPSEAPEV--VEDNRPPPNWPVVGKVDICDLQIRY 1246
M++ + A +Y + + + + + PE+ PN + G V + Y
Sbjct: 982 MAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM-LEGNVQFSGVVFNY 1040
Query: 1247 --RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
RP P VL+G+S + G + +VG +G GK+T+ L R +P G + +DGK
Sbjct: 1041 PTRPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 144/294 (48%), Gaps = 28/294 (9%)
Query: 585 PDVIGVFIQANVAFSRIVNFLE-APELQSMNIRQ-KGNIENVNRAIXXXXXXXXXXXXXX 642
PD + +A V+ S I+ +E PE+ S + + K N+ N +
Sbjct: 992 PD----YAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGN--VQFSGVVFNYPTRPS 1045
Query: 643 XPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--------- 693
P ++ +SLEV+ GQ +A+ G G GKST++ + G++ + GK
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 694 ----AYVSQTAWIQTGSIRENILFGSPMDSHQYQETL---ERCSLIKDLELLPYGDNTEI 746
VSQ + SI ENI +G Y+E + + ++ + ++ LP NT +
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRV 1165
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
G++G LSGGQKQRI +ARAL + I LLD+ SA+D + + + + +A G+ +
Sbjct: 1166 GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTES-EKVVQEALDKAREGRTCI 1224
Query: 807 LVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSER 860
++ H++ + D ++++ +G++ + QLLA + +VS AG++R
Sbjct: 1225 VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQ---AGAKR 1275
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 1224 DNRP-----------PPNWPVVGKVDICDLQIRYRPDSPL-VLKGISCTFEGGHKIGIVG 1271
DN+P P N + G ++ ++ Y + +LKG++ + G + +VG
Sbjct: 366 DNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1272 RTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+G GK+T + RL +P G + +DG+
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 109 bits (272), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 159/714 (22%), Positives = 299/714 (41%), Gaps = 83/714 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------ 693
++ ++L+V+ GQ VA+ G G GKST + + G + + G+
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465
Query: 694 -AYVSQTAWIQTGSIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
VSQ + +I ENI +G + + ++ ++ + + LP+ +T +GERG
Sbjct: 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGA 525
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQKQRI +ARAL ++ I LLD+ SA+D + ++ + +A G+ +++ H+
Sbjct: 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTES-EAVVQAALDKAREGRTTIVIAHR 584
Query: 812 V------DFLPAFDSVLLMSDG---EILR-AAPYHQLLASSKEFQELVSAHKETAGSERL 861
+ D + FD +++ G E++R Y +L+ + E+ ++ + +
Sbjct: 585 LSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEI 644
Query: 862 AEVTPSQKSGMPAKEIKKGHVEKQFEVSKGDQLIKQEERETGDIGLKP----YIQYLNQN 917
+ S K + I++ K DQ K +E D + P I LN
Sbjct: 645 DNLDMSSKDS-GSSLIRRRSTRKSI-CGPHDQDRKLSTKEALDEDVPPASFWRILKLNST 702
Query: 918 KGFLFFSIASLSHL-------------TFVIGQILQNSWLAANVENPNVSTLRLIVVYLL 964
+ + +F + + + V+G +N N+ +L ++L+
Sbjct: 703 E-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSL----LFLI 757
Query: 965 IGFVS--TLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRILSRVS 1020
+G +S T FL + G +K L + S+ R +S++D G + +R++
Sbjct: 758 LGIISFITFFLQGFTFGKA--GEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLA 815
Query: 1021 SDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLA--IRLQRY 1075
+D + V L N + + + + WQ +L +P+I +A + ++
Sbjct: 816 NDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKML 875
Query: 1076 YFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF---FAKNLDLIDTNASPF 1132
K+ L G+ K +A E+I T+ + E +F +A++L + NA
Sbjct: 876 SGQALKDKKELEGSGK--IAT---EAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 1133 FHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM-ALSYGLSLNSSLVMS 1191
H F Q + S +V TF + A+ +G M+
Sbjct: 931 AHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFG-------AMA 983
Query: 1192 IQNQCTLA-NYIISVERLNQYMHVPSEAPEV--VEDNRPPPNWPVVGKVDICDLQIRY-- 1246
+ + A +Y + + + + + PE+ PN + G V + Y
Sbjct: 984 VGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNM-LEGNVQFSGVVFNYPT 1042
Query: 1247 RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
RP P VL+G+S + G + +VG +G GK+T+ L R +P G + +DGK
Sbjct: 1043 RPSIP-VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Score = 102 bits (254), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 200/439 (45%), Gaps = 54/439 (12%)
Query: 460 ITITVLCNTPLAKLQHKFQTKLMVAQ---DERL-----KACSEAFVNMKVL----KLYAW 507
+T+ +L P+ + + K++ Q D++ K +EA N + + + +
Sbjct: 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKF 912
Query: 508 ETHFKNAIEI-LRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASN 566
ET + +++I RN ++KA+ + +S + ++ AC+ L
Sbjct: 913 ETMYAQSLQIPYRNA---------MKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQ 963
Query: 567 VFTFVATLRLVQDPIRIIPDVIGV-------FIQANVAFSRIVNFLE-APELQSMNIRQ- 617
+ TF L LV I +G + +A V+ S I+ +E PE+ S + +
Sbjct: 964 LMTFENVL-LVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGL 1022
Query: 618 KGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
K N+ N + P ++ +SLEV+ GQ +A+ G G GKST++ +
Sbjct: 1023 KPNMLEGN--VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080
Query: 678 GEVPHTQGTIQVYGKT-------------AYVSQTAWIQTGSIRENILFGSPMDSHQYQE 724
G++ + GK VSQ + SI ENI +G Y+E
Sbjct: 1081 RFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE 1140
Query: 725 TL---ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781
+ + ++ + ++ LP NT +G++G LSGGQKQRI +ARAL + I LLD+ S
Sbjct: 1141 IVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATS 1200
Query: 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841
A+D + + + + +A G+ +++ H++ + D ++++ +G++ + QLLA
Sbjct: 1201 ALDTES-EKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ 1259
Query: 842 SKEFQELVSAHKETAGSER 860
+ +VS AG++R
Sbjct: 1260 KGIYFSMVSVQ---AGAKR 1275
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 1224 DNRP-----------PPNWPVVGKVDICDLQIRYRPDSPL-VLKGISCTFEGGHKIGIVG 1271
DN+P P N + G ++ ++ Y + +LKG++ + G + +VG
Sbjct: 366 DNKPSIDSFSKSGHKPDN--IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1272 RTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+G GK+T + RL +P G + +DG+
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 116/486 (23%), Positives = 209/486 (43%), Gaps = 72/486 (14%)
Query: 408 GEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLC 466
G++++ V D + +F IW + + IAL I+F T+AAL + +L
Sbjct: 118 GQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT 177
Query: 467 NTPLAKLQHKFQTKLMVAQDERLKACSE--AFVN-----MKVLKLYAWETHFKNAIEILR 519
+ F +L ER +A +E F++ + V+K +A E N +
Sbjct: 178 -------VYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIE---DNEAKNFD 227
Query: 520 NVEYKWLSAVQLRKAYNGFLFWS-------SPVLVSTATFGACYFLNVPLYASNVFTFVA 572
+L+ +N + F + P++V GA ++ + + FV
Sbjct: 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIV--IGVGAYLAISGSITVGTLAAFVG 285
Query: 573 TLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE-------LQSMNIRQ-KGNIENV 624
L L+ P+R + Q+ + R+ ++ Q + I+Q + +I++V
Sbjct: 286 YLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHV 345
Query: 625 NRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
+ P +++I+L + G+ VA G G GKSTL+ I T
Sbjct: 346 S----------FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395
Query: 685 GTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSL 731
G I + G + V Q + + +++ENIL G P + + E +E +
Sbjct: 396 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDE--EVVEAAKM 453
Query: 732 IKDLEL---LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788
+ LP G +TE+GERGV LSGGQKQR+ +AR + I +LD+ SA+D +
Sbjct: 454 ANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513
Query: 789 SSLFNDYVMEALS----GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
S + EAL + L+V H++ + D ++++ +G I+ + +L+A
Sbjct: 514 S-----IIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGA 568
Query: 845 FQELVS 850
++ L S
Sbjct: 569 YEHLYS 574
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 150/360 (41%), Gaps = 37/360 (10%)
Query: 987 SSKSLFS---QLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTN 1043
S+K L+ +L N L FY + +G+++SRV +D + + F + N
Sbjct: 89 SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVIND-------VEQTKDFILTGLMN 141
Query: 1044 ACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA-------KELMRLNGTTKSLVAN 1096
+ + + + F+ + + A+ + +Y +T ++L R + V
Sbjct: 142 IWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQG 201
Query: 1097 HLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN--ASPFFHSFAANEWLIQRLETLSAT-- 1152
L E + G +++F ED AKN D +TN H+ N + + T++
Sbjct: 202 FLHERVQGISVVKSFAIEDNE-AKNFDKKNTNFLTRALKHT-RWNAYSFAAINTVTDIGP 259
Query: 1153 --VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQ 1210
VI A+ + G+ T G + + Y L L + + TL S++R+ Q
Sbjct: 260 IIVIGVGAYLAI---SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQ 316
Query: 1211 YMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1270
+ E ++ P G++DI + +Y + +LK I+ + E G + V
Sbjct: 317 LI---DEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFV 373
Query: 1271 GRTGSGKTTLRGALFRLIEPARGKILVDGK------LAEYDEPMELMKREGSLFGQLVKE 1324
G +G GK+TL + R + G+IL+DG + L++++ LF VKE
Sbjct: 374 GMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKE 433
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 106 bits (265), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 109/496 (21%), Positives = 214/496 (43%), Gaps = 44/496 (8%)
Query: 386 LTAAIYRKQLR--LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALI 443
L ++RK L +SN R S ++ +T D ++ +I + L + I
Sbjct: 98 LRRDLFRKVLSFSISNVNRFHTSS--LITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGI 155
Query: 444 ILFHAVGLATIAALV-VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVL 502
++ ++ + + L+ +I VL L K + K+ + DE + E + ++V+
Sbjct: 156 VMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVV 215
Query: 503 KLYAWETH----FKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFL 558
+ + E + F+ A E LR S + A F+F + +++ FG
Sbjct: 216 RAFRREEYENENFRKANESLRRSIISAFSLIVF--ALPLFIFIVNMGMIAVLWFGGVLVR 273
Query: 559 NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL-EAPELQSM---- 613
N + ++ + L + + +I +++ ++A+ + R++ L E P ++
Sbjct: 274 NNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNAL 333
Query: 614 ---NIRQKGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKS 670
N+ + ENV P + ++ V+PG VA+ GE GSGKS
Sbjct: 334 ALPNVEGSVSFENVE----------FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKS 383
Query: 671 TLLAAILGEVPHTQGTIQV-------------YGKTAYVSQTAWIQTGSIRENILFGSPM 717
TL+ I + +G ++V G + V Q + +G+I+EN+ +G
Sbjct: 384 TLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED 443
Query: 718 DSHQYQETLERCSLIKDLEL-LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776
+ + + I D + LP G ++ + G N SGGQKQR+ +ARAL + + +L
Sbjct: 444 ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLIL 503
Query: 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYH 836
DD S+VD T + D + G ++T ++ D +L++ +G++ +
Sbjct: 504 DDCTSSVDPITEKRIL-DGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562
Query: 837 QLLASSKEFQELVSAH 852
+LL K ++E+ +
Sbjct: 563 ELLEHCKPYREIYESQ 578
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 92/407 (22%), Positives = 171/407 (42%), Gaps = 79/407 (19%)
Query: 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST----PLG 1013
L+++ LIG V + V +S++ + L LFR +SF S
Sbjct: 68 LMLIVALIGAVG-------GIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTS 120
Query: 1014 RILSRVSSDLS--------IVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPV 1065
+++R+++D++ ++ + + L+F G N+ + +V+ +F+ P+
Sbjct: 121 SLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVL----IFLIPPI 176
Query: 1066 IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLI 1125
+ L + L + L R + V + E++ G +RAF E+
Sbjct: 177 VLLFVWLTK----KGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREE---------- 222
Query: 1126 DTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM--ALSYGLS 1183
NE + E+L ++IS+ + + LP F +GM L +G
Sbjct: 223 -----------YENENFRKANESLRRSIISAFSLIVFALPLFIFIVN-MGMIAVLWFGGV 270
Query: 1184 LNSSLVMSIQNQCTLANYIISV--------ERLNQYMHVPSEAPEVVE--DNRPP----- 1228
L + M I + NY++ + LN + + A V+E + +P
Sbjct: 271 LVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEAD 330
Query: 1229 -----PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGA 1283
PN V G V +++ RY ++ VL G++ + + G + ++G TGSGK+TL
Sbjct: 331 NALALPN--VEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNL 388
Query: 1284 LFRLIEPARGKILVDG------KLAEYDEPMELMKREGSLFGQLVKE 1324
+ RLI+P RG++ VD KL + + + +E LF +KE
Sbjct: 389 IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE 435
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 29/241 (12%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691
P ++ SL + G A+ G GSGKST+L+ +L GTI + G
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 692 -KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD----LELLPYGDNTEI 746
K VSQ + + SI ENI +G+ S E ++R + + + + P G NT +
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY-VMEAL----S 801
GE+GV LSGGQKQRI +ARAL ++ I LLD+ SA+DA N+Y V EAL
Sbjct: 478 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE------NEYLVQEALDRLMD 531
Query: 802 GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE-FQELVSAHKETAGSER 860
G+ VL++ H++ + + V ++ G+I + +LL+ +++L++ + +E
Sbjct: 532 GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFISAAEN 591
Query: 861 L 861
L
Sbjct: 592 L 592
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 159/364 (43%), Gaps = 40/364 (10%)
Query: 971 LFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDI 1030
++LM S +V +R+S L +S+ R ++F+D T G +++R+SSD +++ +
Sbjct: 83 VYLMQTSGQRIVNRLRTS------LFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
Query: 1031 PFSLIFAVGATTNACSNLGVLAVVTWQ----VLFVSIPVIFLAIRLQRYYFVTAKELMRL 1086
+L + A A + ++ V+ VL V PV +A+ RY ++L ++
Sbjct: 137 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL----RKLTKV 192
Query: 1087 NGTTKSLV-ANHLAES-IAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFA-ANEWLI 1143
T SL A LAE I T+RAF K + I+ AS H A +
Sbjct: 193 --TQDSLAQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQLARKEAF 243
Query: 1144 QRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII 1203
R AT +S + +L G G M + L+S L+ + ++
Sbjct: 244 ARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGISIGGLSS 300
Query: 1204 SVERLNQYMHVPSEAPEVVE-DNRPPPNWPVV-------GKVDICDLQIRY--RPDSPLV 1253
L + + E++E + + P N V+ G ++ ++ Y RP+ P +
Sbjct: 301 FYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVP-I 359
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
+ S + G +VG +GSGK+T+ L RL +PA G I +DG P+ L +
Sbjct: 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419
Query: 1314 EGSL 1317
G++
Sbjct: 420 IGTV 423
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 113/219 (51%), Gaps = 28/219 (12%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691
P ++ SL + G A+ G GSGKST+L+ +L GTI + G
Sbjct: 389 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 448
Query: 692 -KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD----LELLPYGDNTEI 746
K VSQ + + SI ENI +G+ S E ++R + + + + P G NT +
Sbjct: 449 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY-VMEAL----S 801
GE+GV LSGGQKQRI +ARAL ++ I LLD+ SA+DA N+Y V EAL
Sbjct: 509 GEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAE------NEYLVQEALDRLMD 562
Query: 802 GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
G+ VL++ H + + + V ++ G+I + +LL+
Sbjct: 563 GRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLS 601
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 106/431 (24%), Positives = 185/431 (42%), Gaps = 45/431 (10%)
Query: 909 PYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAANVE-NPNVSTLRL-IVVYLLIG 966
P + L GFL S F +G+I+ + V+ + N++ L L + L G
Sbjct: 47 PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCG 106
Query: 967 FVST---LFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDL 1023
+ ++LM S +V +R+S L +S+ R ++F+D T G +++R+SSD
Sbjct: 107 AAANAIRVYLMQTSGQRIVNRLRTS------LFSSILRQEVAFFDKTRTGELINRLSSDT 160
Query: 1024 SIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ----VLFVSIPVIFLAIRLQRYYFVT 1079
+++ + +L + A A + ++ V+ VL V PV +A+ RY
Sbjct: 161 ALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYL--- 217
Query: 1080 AKELMRLNGTTKSLV-ANHLAES-IAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFA 1137
++L ++ T SL A LAE I T+RAF K + I+ AS H
Sbjct: 218 -RKLTKV--TQDSLAQATQLAEERIGNVRTVRAF-------GKEMTEIEKYASKVDHVMQ 267
Query: 1138 -ANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196
A + R AT +S + +L G G M + L+S L+ +
Sbjct: 268 LARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVG---ELSSFLMYAFWVGI 324
Query: 1197 TLANYIISVERLNQYMHVPSEAPEVVE-DNRPPPNWPVV-------GKVDICDLQIRY-- 1246
++ L + + E++E + + P N V+ G ++ ++ Y
Sbjct: 325 SIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPA 384
Query: 1247 RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE 1306
RP+ P + + S + G +VG +GSGK+T+ L RL +PA G I +DG
Sbjct: 385 RPEVP-IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN 443
Query: 1307 PMELMKREGSL 1317
P+ L + G++
Sbjct: 444 PVWLRSKIGTV 454
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 114/222 (51%), Gaps = 16/222 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692
+R+IS E +P +A G G GKST+ + + T G I + G+
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ 77
Query: 693 TAYVSQTAWIQTGSIRENILFGSPMD--SHQYQETLERCSLIKDLELLPYGDNTEIGERG 750
+VSQ + I G+IREN+ +G D + L+ +E +P NTE+GERG
Sbjct: 78 IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
V +SGGQ+QR+ +ARA ++ I +LD+ +++D+ + S+ + + G+ L++ H
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES-ESMVQKALDSLMKGRTTLVIAH 196
Query: 811 QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852
++ + D + + G+I + +++L+A+ + + VS
Sbjct: 197 RLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
DS +L+ IS + I G +G GK+T+ L R +P G+I +DG+
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT---------- 693
P + ++S + G+ VA+ G GSGKST+ G+I + G
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 694 ---AYVSQTAWIQTGSIRENILFGSPMD--SHQYQETLERCSLIKDLELLPYGDNTEIGE 748
A VSQ + +I NI + + + Q ++ + ++ +E +P G +T IGE
Sbjct: 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGE 476
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
G +LSGGQ+QR+ +ARAL +DA + +LD+ SA+D + ++ + E K VL++
Sbjct: 477 NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI-QAALDELQKNKTVLVI 535
Query: 809 THQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
H++ + D +L++ +GEI+ + LLA + +L
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 159/379 (41%), Gaps = 36/379 (9%)
Query: 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRI 1015
L L+ V L GF S+ + +S +VV+ +R +L N P+ F+D G +
Sbjct: 72 LGLMFVRGLSGFASS-YCLSWVSGNVVMQMRR------RLFNHFMHMPVRFFDQESTGGL 124
Query: 1016 LSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ------VLFVSIPVIFLA 1069
LSR++ D V +L+ V S +G+L ++ W VL V PV+ A
Sbjct: 125 LSRITYDSEQVAGATSRALVSIV---REGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFA 181
Query: 1070 IRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLID 1126
I F +++ R T V + + + G + ++ E E + F K + +
Sbjct: 182 ISFVSKRF---RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR 238
Query: 1127 TNASPFFHSFAANEWLIQRLETLS---ATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS 1183
+ + + +IQ + +L+ ++S L PGTFT F M +GL
Sbjct: 239 QQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAM---FGLM 295
Query: 1184 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 1243
+ S+ ++ + + + L M + +E DN V G+VD+ D+
Sbjct: 296 RPLKALTSVTSE--FQRGMAACQTLFGLMDLETE-----RDNGKYEAERVNGEVDVKDVT 348
Query: 1244 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAE 1303
Y+ L +S + G + +VGR+GSGK+T+ R + G I +DG
Sbjct: 349 FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408
Query: 1304 YDEPMELMKREGSLFGQLV 1322
D + ++R +L Q V
Sbjct: 409 -DYKLTNLRRHFALVSQNV 426
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 106/457 (23%), Positives = 199/457 (43%), Gaps = 57/457 (12%)
Query: 430 QIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERL 489
Q ++ V L A+I++F + ++ L ++ +TVL ++ QT+ +++R+
Sbjct: 157 QFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS-----QTRKYFYENQRV 211
Query: 490 KA-----CSEAFVNMKVLKLYAWETH----FKNAIEILRNVEYK--WLSAV--QLRKAYN 536
E + V+KL+ E F E LR V K S V L N
Sbjct: 212 LGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 537 GFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANV 596
F L+S FG L + + TF+ R P+ + + + A
Sbjct: 272 NLGF----ALISG--FGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALA 325
Query: 597 AFSRIVNFLEAPELQ----SMNIRQ-KGNIENVNRAIXXXXXXXXXXXXXXXPTMRNISL 651
+ RI L+ E + ++ +R+ +G IE N P +++I+
Sbjct: 326 SAERIFEILDLEEEKDDPDAVELREVRGEIEFKN---------VWFSYDKKKPVLKDITF 376
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTAYVSQ 698
++PGQKVA+ G GSGK+T++ ++ +G I V G V Q
Sbjct: 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436
Query: 699 TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD---LELLPYGDNTEIGERGVNLSG 755
+ + +++EN+ +G+P + +E E L ++ LP G T + + G +LS
Sbjct: 437 DTILFSTTVKENLKYGNPGATD--EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
GQ+Q + + RA + I +LD+ S VD T S+ + + + GK +++ H+++ +
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI-QAAMWKLMEGKTSIIIAHRLNTI 553
Query: 816 PAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852
D ++++ DGEI+ + +L+ + EL ++
Sbjct: 554 KNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 148/333 (44%), Gaps = 52/333 (15%)
Query: 991 LFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI-FAVGATT------- 1042
L +L L R P+ F+D TP G I+SRV +D+ ++ + S+I F G T
Sbjct: 112 LRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIM 171
Query: 1043 ----NACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHL 1098
N +L L++V VL I ++ + ++Y++ + L +LNG +
Sbjct: 172 MFRVNVILSLVTLSIVPLTVLITQI----VSSQTRKYFYENQRVLGQLNGI--------I 219
Query: 1099 AESIAGAMTIRAFEEEDRFFAK------NLDLIDTNASPFFHSFAANEWLIQRLETLSAT 1152
E I+G I+ F E++ K +L + T A F L+ + L
Sbjct: 220 EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPP---LMNMVNNLGFA 276
Query: 1153 VISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYII-SVERL 1208
+IS + L + GT FIG + + LN + NQ + + S ER+
Sbjct: 277 LISGFGGWLALKDIITVGTIAT-FIGYSRQFTRPLNE-----LSNQFNMIQMALASAERI 330
Query: 1209 NQYMHVPSEA--PEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHK 1266
+ + + E P+ VE V G+++ ++ Y P VLK I+ + G K
Sbjct: 331 FEILDLEEEKDDPDAVELRE------VRGEIEFKNVWFSYDKKKP-VLKDITFHIKPGQK 383
Query: 1267 IGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
+ +VG TGSGKTT+ L R + RG+ILVDG
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDG 416
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 115/225 (51%), Gaps = 19/225 (8%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691
P +RNI+L++ G+ VA+ G GSGKST+ + I +G I + G
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 692 -KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQ-ETLERCSLIKD-LELLPYGDNTEIGE 748
+ A VSQ + ++ NI + + + Q E R + D + + G +T IGE
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
GV LSGGQ+QRI +ARAL +D+ I +LD+ SA+D + ++ + E + L++
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI-QAALDELQKNRTSLVI 535
Query: 809 THQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHK 853
H++ + D ++++ DG I+ + +LLA + +L HK
Sbjct: 536 AHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQL---HK 577
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 85/362 (23%), Positives = 155/362 (42%), Gaps = 35/362 (9%)
Query: 958 LIVVYLLIGFVSTLFLMSRSLS----SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG 1013
L+V+ L+I T ++ S +S VV+ +R + LF ++ P++F+D G
Sbjct: 69 LVVIGLMILRGITSYISSYCISWVSGKVVMTMR--RRLFGHMMG----MPVAFFDKQSTG 122
Query: 1014 RILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAI 1070
+LSR++ D V +LI V + ++ +WQ +L V P++ +AI
Sbjct: 123 TLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAI 182
Query: 1071 RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDT 1127
R+ F + + M+ T V + + G + F E E + F K + +
Sbjct: 183 RVVSKRFRSISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRL 239
Query: 1128 NASPFFHSFAANEWLIQRLETLS-ATVISSAAFCMVL--LPPGTFTPGFIGM-ALSYGLS 1183
+ + ++ +IQ + +L+ A V+ +A+F V+ L GT T F M AL L
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 1184 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 1243
+++ Q + ++ Q E V++ G ++ ++
Sbjct: 300 SLTNVNAQFQRGMAACQTLFAILDSEQE---KDEGKRVID--------RATGDLEFRNVT 348
Query: 1244 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG-KLA 1302
Y L+ I+ G + +VGR+GSGK+T+ + R + G IL+DG L
Sbjct: 349 FTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR 408
Query: 1303 EY 1304
EY
Sbjct: 409 EY 410
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 115/484 (23%), Positives = 193/484 (39%), Gaps = 81/484 (16%)
Query: 406 SGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVL 465
S G ++ V A IG F F+ W QL I LI+L A +V I I V+
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSW----QLSIILIVL---------APIVSIAIRVV 185
Query: 466 CNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEIL----RNV 521
+R + S+ N + E K E+L + V
Sbjct: 186 S--------------------KRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEV 225
Query: 522 EYKWLSAVQLRKAYNGFLFWSS-----PVLVSTATFGACYFLNVP--------LYASNVF 568
E K V R G S+ P++ A+ + L L A +
Sbjct: 226 ETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTIT 285
Query: 569 TFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL----EAPELQSMNIRQKGNIENV 624
+++ + P++ + +V F + A + L E E + + R G++E
Sbjct: 286 VVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFR 345
Query: 625 NRAIXXXXXXXXXXXXXXXPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684
N P +RNI+L++ G+ VA+ G GSGKST+ + I +
Sbjct: 346 N--------VTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 397
Query: 685 GTIQVYG-------------KTAYVSQTAWIQTGSIRENILFG--SPMDSHQYQETLERC 729
G I + G + A VSQ + ++ NI + Q +E
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMA 457
Query: 730 SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789
+ + + G +T IGE GV LSGGQ+QRI +ARAL +D+ I +LD+ SA+D +
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 790 SLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
++ + E + L++ H++ + D ++++ DG I+ ++ LL + +L
Sbjct: 518 AI-QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQL- 575
Query: 850 SAHK 853
HK
Sbjct: 576 --HK 577
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 35/362 (9%)
Query: 958 LIVVYLLIGFVSTLFLMSRSLS----SVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG 1013
L+V+ L+I T ++ S +S VV+ +R + LF ++ P+SF+D G
Sbjct: 69 LVVIGLMILRGITSYVSSYCISWVSGKVVMTMR--RRLFGHMMG----MPVSFFDKQSTG 122
Query: 1014 RILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQ---VLFVSIPVIFLAI 1070
+LSR++ D V +LI V + ++ +WQ +L V P++ +AI
Sbjct: 123 TLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAI 182
Query: 1071 RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF---EEEDRFFAKNLDLIDT 1127
R+ F + M+ T V + + G + F E E + F K + +
Sbjct: 183 RVVSKRFRNISKNMQ---NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRL 239
Query: 1128 NASPFFHSFAANEWLIQRLETLS-ATVISSAAFCMVL--LPPGTFTPGFIGM-ALSYGLS 1183
+ + ++ +IQ + +L+ A V+ +A+F V+ L GT T F M AL L
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLK 299
Query: 1184 LNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQ 1243
+++ Q + ++ Q E V+E G V+ ++
Sbjct: 300 SLTNVNAQFQRGMAACQTLFTILDSEQE---KDEGKRVIE--------RATGDVEFRNVT 348
Query: 1244 IRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG-KLA 1302
Y L+ I+ G + +VGR+GSGK+T+ + R + G+IL+DG L
Sbjct: 349 FTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLR 408
Query: 1303 EY 1304
EY
Sbjct: 409 EY 410
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT----------- 693
T+++I+ + G A+ G GSGKST+ A +L +G I++ GK
Sbjct: 35 TLKSINFFIPSGTTCALVGHTGSGKSTI-AKLLYRFYDAEGDIKIGGKNVNKYNRNSIRS 93
Query: 694 --AYVSQTAWIQTGSIRENILFGSPMDSHQYQ--ETLERCSLIKDLELLPYGDNTEIGER 749
V Q + +I+ NIL+G +D+ + + + L +E LP +T +G +
Sbjct: 94 IIGIVPQDTILFNETIKYNILYG-KLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNK 152
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
G+ LSGG++QRI +AR L +D I + D+ S++D+ T LF V + + ++++
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT-EYLFQKAVEDLRKNRTLIIIA 211
Query: 810 HQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
H++ + + +S++L++ G+I+ + LL + E+ E+
Sbjct: 212 HRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEM 250
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 1237 VDICDLQIRY-RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++ D+ Y + + LK I+ G +VG TGSGK+T+ L+R + A G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGDI 76
Query: 1296 LVDGK 1300
+ GK
Sbjct: 77 KIGGK 81
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 116/238 (48%), Gaps = 18/238 (7%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT----------- 693
T++++S V PGQ +A+ G G+GKST+L + + G I++ G+
Sbjct: 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRS 128
Query: 694 --AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERG 750
V Q + +I +NI +G + E + + I D + P G T++GERG
Sbjct: 129 HIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERG 188
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
+ LSGG+KQR+ +AR + + I LLD+ SA+D ++ + + + + ++V H
Sbjct: 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI-QASLAKVCANRTTIVVAH 247
Query: 811 QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQ 868
++ + D +L++ DG I+ + LL+ + ++ + G E +E T Q
Sbjct: 248 RLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ---GQEETSEDTKPQ 302
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGK 1294
G+++ ++ Y D L+ +S T G + +VG +G+GK+T+ LFR + + G
Sbjct: 52 GRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 1295 ILVDGK 1300
I +DG+
Sbjct: 111 IRIDGQ 116
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 104/210 (49%), Gaps = 15/210 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 21 LDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHR 199
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841
+ + D +++M G+I+ + +LL+
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELLSE 229
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR GSGK+TL + R P G++L+DG
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 68 DLALADPNWLRRQVG 82
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ H+
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHR 197
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELLS 226
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 66 DLALADPNWLRRQVG 80
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHR 203
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 72 DLALADPNWLRRQVG 86
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 21 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 80
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 81 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 140
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ H+
Sbjct: 141 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAHR 199
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 200 LSTVKNADRIIVMEKGKIVEQGKHKELLS 228
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 68 DLALADPNWLRRQVG 82
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D SA+D + + + + + G+ V+++ H+
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN-MHKICKGRTVIIIAHR 203
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 72 DLALADPNWLRRQVG 86
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 78
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 79 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 138
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ +
Sbjct: 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAAR 197
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 198 LSTVKNADRIIVMEKGKIVEQGKHKELLS 226
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 66 DLALADPNWLRRQVG 80
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 79.7 bits (195), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 103/209 (49%), Gaps = 15/209 (7%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI--Q 703
+ NI+L ++ G+ + I G GSGKSTL I G + + G ++ W+ Q
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84
Query: 704 TG-----------SIRENILFGSPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGERGV 751
G SI +NI +P S + + + D + L G NT +GE+G
Sbjct: 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ 811
LSGGQ+QRI +ARAL + I + D+ SA+D + + + + + G+ V+++ +
Sbjct: 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN-MHKICKGRTVIIIAAR 203
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLA 840
+ + D +++M G+I+ + +LL+
Sbjct: 204 LSTVKNADRIIVMEKGKIVEQGKHKELLS 232
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 48/75 (64%)
Query: 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
+++ RY+PDSP++L I+ + + G IGIVGR+GSGK+TL + R P G++L+DG
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 1301 LAEYDEPMELMKREG 1315
+P L ++ G
Sbjct: 72 DLALADPNWLRRQVG 86
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 106/227 (46%), Gaps = 26/227 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692
++ ++ +RPG+ A+ G GSGKST+ A + T G + + GK
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQ 92
Query: 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLER--CSLIKD-----LELLPYGDNTE 745
A V Q + S++ENI +G + T+E + +K + LP G +TE
Sbjct: 93 VAAVGQEPQVFGRSLQENIAYGLTQ-----KPTMEEITAAAVKSGAHSFISGLPQGYDTE 147
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN-DYVMEALSGKV 804
+ E G LSGGQ+Q + LARAL + + +LDD SA+DA++ + Y +
Sbjct: 148 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 207
Query: 805 VLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSA 851
VLL+T + + D +L + G I + QL+ + +V A
Sbjct: 208 VLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWAMVQA 254
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 1235 GKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G V D+ Y RPD LVL+G++ T G +VG GSGK+T+ L L +P
Sbjct: 13 GLVQFQDVSFAYPNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 1293 GKILVDGK-LAEYDE-----PMELMKREGSLFGQLVKE 1324
G++L+DGK L +Y+ + + +E +FG+ ++E
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQE 109
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692
++ ++ + PG+ A+ G GSGKST+ A + T G + + G +
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 693 TAYVSQTAWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGE 748
A V Q + S RENI +G +P +E S D + P G +TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME--SGAHDFISGFPQGYDTEVGE 152
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN-DYVMEALSGKVVLL 807
G LSGGQ+Q + LARAL + + +LD SA+DA + Y + + VLL
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
+THQ+ +L + +G + + QL+ ++ +V
Sbjct: 213 ITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 1235 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1293 GKILVDGK-LAEYDE-----PMELMKREGSLFGQLVKE 1324
GK+L+DG+ L +YD + + +E LFG+ +E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 23/217 (10%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA----------Y 695
+++++ E G+ + G+ GSGK+TLL IL + G I + G A Y
Sbjct: 27 LKDVNAEFETGKIYVVVGKNGSGKTTLLK-ILAGLLAAAGEIFLDGSPADPFLLRKNVGY 85
Query: 696 VSQ--TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
V Q ++ I ++ E++ F ++ E+ R + K LEL+ G + +NL
Sbjct: 86 VFQNPSSQIIGATVEEDVAF--SLEIMGLDESEMRKRIKKVLELV--GLSGLAAADPLNL 141
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQ 811
SGGQKQR+ +A L +D LD+P S +D + +F V+E+L GK ++LVTH+
Sbjct: 142 SGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQ--VLESLKNEGKGIILVTHE 199
Query: 812 VDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848
+++L D +L +S+G I + + + +EF ++
Sbjct: 200 LEYLDDMDFILHISNGTIDFCGSWEEFV--EREFDDV 234
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
++++ + RY D VLK ++ FE G +VG+ GSGKTTL L L+ A G+I
Sbjct: 11 RIELNSVSFRYNGD--YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA-GEI 67
Query: 1296 LVDGKLAEYDEPMELMKREGSLF 1318
+DG A +P L K G +F
Sbjct: 68 FLDGSPA---DPFLLRKNVGYVF 87
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 73.2 bits (178), Expect = 1e-12, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 22/201 (10%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------T 693
++R +S ++R G+ V + G GSGK+T+L I G T+G + + GK
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89
Query: 694 AYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERC-SLIKDLELLPYGDNTEIGERGV 751
V Q A Q ++ +N+ FG E R L++ + L Y +
Sbjct: 90 GLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----H 144
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSL--FNDYVMEALSGKVVLLVT 809
LSGGQ+QR+ LARAL + L D+PF+A+D L F V + + G + VT
Sbjct: 145 ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVT 203
Query: 810 H-QVDFLPAFDSVLLMSDGEI 829
H Q + L D VL++ +G +
Sbjct: 204 HDQEEALEVADRVLVLHEGNV 224
Score = 37.4 bits (85), Expect = 0.052, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 1248 PDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
P ++G+S G +G++G +GSGKTT+ + L P +G + + GK
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK 77
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 21/200 (10%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------ 693
+ NIS + PGQ+V + G GSGKSTLL+A L + +T+G IQ+ G +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGEIQIDGVSWDSITLEQWRKA 95
Query: 694 -AYVSQTAWIQTGSIRENILFGSPMDSHQYQE---TLERCSLIKDLELLPYGDNTEIGER 749
+ Q +I +G+ R+N+ P +H QE + L +E P + + +
Sbjct: 96 FGVIPQKVFIFSGTFRKNL---DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDG 152
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
G LS G KQ + LAR++ A I LLD+P + +D T + + +A + V+L
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-QIIRRTLKQAFADCTVILCE 211
Query: 810 HQVDFLPAFDSVLLMSDGEI 829
+++ + D L++ + ++
Sbjct: 212 ARIEAMLECDQFLVIEENKV 231
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290
WP G++ + DL +Y +L+ IS + G ++G++GRTGSGK+TL A RL+
Sbjct: 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN- 72
Query: 1291 ARGKILVDG 1299
G+I +DG
Sbjct: 73 TEGEIQIDG 81
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692
++ ++ + PG+ A+ G GSGKST+ A + T G + + G +
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 693 TAYVSQTAWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGE 748
A V Q + S RENI +G +P +E S D + P G +TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME--SGAHDFISGFPQGYDTEVGE 152
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN-DYVMEALSGKVVLL 807
G LSGGQ+Q + LARAL + + +LD+ SA+DA + Y + + VLL
Sbjct: 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
+T Q+ +L + +G + + QL+ ++ +V
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 1235 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1293 GKILVDGK-LAEYDE-----PMELMKREGSLFGQLVKE 1324
GK+L+DG+ L +YD + + +E LFG+ +E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 29/220 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGKT-AYVSQT---- 699
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++ V G+ +S++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 79
Query: 700 AWIQTGSIREN-------ILFGS-----PMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
A Q G I ++ +FG+ +D+ E R + + L L+ GD +
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL--LSLVGLGDKHD-- 135
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKV 804
NLSGGQKQR+ +ARAL + + L D+ SA+D T S+ +++ ++ G
Sbjct: 136 SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE--LLKDINRRLGLT 193
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+LL+TH++D + D V ++S+GE++ ++ + K
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S G G++G +G+GK+TL + L P G +LVDG+
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 67
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 113/220 (51%), Gaps = 29/220 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGKT-AYVSQT---- 699
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++ V G+ +S++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 700 AWIQTGSIREN-------ILFGS-----PMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
A Q G I ++ +FG+ +D+ E R + + L L+ GD +
Sbjct: 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL--LSLVGLGDKHD-- 158
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKV 804
NLSGGQKQR+ +ARAL + + L D SA+D T S+ +++ ++ G
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLT 216
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+LL+TH++D + D V ++S+GE++ ++ + K
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256
Score = 36.2 bits (82), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S G G++G +G+GK+TL + L P G +LVDG+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 112/220 (50%), Gaps = 29/220 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAI-LGEVPHTQGTIQVYGKT-AYVSQT---- 699
+ N+SL V GQ + G G+GKSTL+ + L E P T+G++ V G+ +S++
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-TEGSVLVDGQELTTLSESELTK 102
Query: 700 AWIQTGSIREN-------ILFGS-----PMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
A Q G I ++ +FG+ +D+ E R + + L L+ GD +
Sbjct: 103 ARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL--LSLVGLGDKHD-- 158
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS---GKV 804
NLSGGQKQR+ +ARAL + + L D SA+D T S+ +++ ++ G
Sbjct: 159 SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE--LLKDINRRLGLT 216
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSK 843
+LL+TH+ D + D V ++S+GE++ ++ + K
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 256
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S G G++G +G+GK+TL + L P G +LVDG+
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ-TGSIREN 710
E+R G+ + I G G GK+T + + G T+G ++ AY Q + G++ E
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 423
Query: 711 ILFGSPMDSHQYQETLERCSLIKDLELLP-YGDNTEIGERGVNLSGGQKQRIQLARALYQ 769
+ S +DS + + L+K L ++ Y N E +LSGG+ QR+ +A L +
Sbjct: 424 L---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATLLR 474
Query: 770 DADIYLLDDPFSAVDAHT--ASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDG 827
DADIYLLD+P + +D A S ++ME + K L+V H V + L++ +G
Sbjct: 475 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEG 533
Query: 828 E 828
E
Sbjct: 534 E 534
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE-VPHT-------QGTIQVYGKTAYVSQTAWIQT 704
V+ G V I G G+GK+T + + G+ +P+ I+ + + ++
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 159
Query: 705 GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG---------------ER 749
G IR P+ QY + L + K ELL D E+G +R
Sbjct: 160 GEIR-------PVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR 210
Query: 750 GVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
++ LSGG+ QR+ +A AL + A Y D+P S +D + A GK VL+V
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 270
Query: 809 THQVDFLPAFDSVLLMSDGE 828
H + L V+ + GE
Sbjct: 271 EHDLAVLDYLSDVIHVVYGE 290
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVK 1323
G IGIVG G GKTT L + EP GK+ D +A Y + EG+++ L K
Sbjct: 368 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQYIKAEYEGTVYELLSK 426
Query: 1324 EYWSHLHS 1331
S L+S
Sbjct: 427 IDSSKLNS 434
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 14/181 (7%)
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ-TGSIREN 710
E+R G+ + I G G GK+T + + G T+G ++ AY Q + G++ E
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYEL 437
Query: 711 ILFGSPMDSHQYQETLERCSLIKDLELLP-YGDNTEIGERGVNLSGGQKQRIQLARALYQ 769
+ S +DS + + L+K L ++ Y N E +LSGG+ QR+ +A L +
Sbjct: 438 L---SKIDSSKLNSNFYKTELLKPLGIIDLYDRNVE------DLSGGELQRVAIAATLLR 488
Query: 770 DADIYLLDDPFSAVDAHT--ASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDG 827
DADIYLLD+P + +D A S ++ME + K L+V H V + L++ +G
Sbjct: 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK-NEKTALVVEHDVLMIDYVSDRLIVFEG 547
Query: 828 E 828
E
Sbjct: 548 E 548
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE-VPHT-------QGTIQVYGKTAYVSQTAWIQT 704
V+ G V I G G+GK+T + + G+ +P+ I+ + + ++
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173
Query: 705 GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG---------------ER 749
G IR P+ QY + L + K ELL D E+G +R
Sbjct: 174 GEIR-------PVVKPQYVDLLPKAVKGKVRELLKKVD--EVGKFEEVVKELELENVLDR 224
Query: 750 GVN-LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLV 808
++ LSGG+ QR+ +A AL + A Y D+P S +D + A GK VL+V
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVV 284
Query: 809 THQVDFLPAFDSVLLMSDGE 828
H + L V+ + GE
Sbjct: 285 EHDLAVLDYLSDVIHVVYGE 304
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVK 1323
G IGIVG G GKTT L + EP GK+ D +A Y + EG+++ L K
Sbjct: 382 GEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA-YKPQYIKAEYEGTVYELLSK 440
Query: 1324 EYWSHLHS 1331
S L+S
Sbjct: 441 IDSSKLNS 448
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692
++ ++ + PG+ A+ G GSGKST+ A + T G + + G +
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94
Query: 693 TAYVSQTAWIQTGSIRENILFG---SPMDSHQYQETLERCSLIKD-LELLPYGDNTEIGE 748
A V Q + S RENI +G +P +E S D + P G +TE+GE
Sbjct: 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME--SGAHDFISGFPQGYDTEVGE 152
Query: 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN-DYVMEALSGKVVLL 807
G L+ GQ+Q + LARAL + + +LD+ SA+DA + Y + + VLL
Sbjct: 153 TGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLL 212
Query: 808 VTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849
+T Q+ +L + +G + + QL+ ++ +V
Sbjct: 213 ITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 1235 GKVDICDLQIRYRPDSP--LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
G V D+ Y P+ P VL+G++ T G +VG GSGK+T+ L L +P
Sbjct: 15 GLVKFQDVSFAY-PNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 1293 GKILVDGK-LAEYDE-----PMELMKREGSLFGQLVKE 1324
GK+L+DG+ L +YD + + +E LFG+ +E
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRE 111
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 65.5 bits (158), Expect = 2e-10, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 45/218 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------- 689
++N++L ++ G+ V+I G GSGKST+L I T+G + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 690 -YGKTAYV-SQTAWIQTGSIRENI------LFGSPMDSHQYQETLERCSLIKDLELLPYG 741
K +V Q I + EN+ + M + ++ C + +LE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----- 135
Query: 742 DNTEIGERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
ER N LSGGQ+QR+ +ARAL + I L D P A+D+ T + +
Sbjct: 136 ------ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ--L 187
Query: 797 MEALS---GKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
++ L+ GK V++VTH ++ + ++ + DGE+ R
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
LK ++ + G + I+G +GSGK+T+ + L +P G++ +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 22/213 (10%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAW-- 701
P + +ISL + PG+ + I G G GK+TLL + G G I + GKT + T
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPV 77
Query: 702 --------IQTG------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
+Q G ++ NI +G + + + + ER + LEL G + G
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLEL--TGISELAG 133
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVL 806
LSGGQ+QR LARAL D ++ LLD+PFSA+D + D + +GK +
Sbjct: 134 RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 807 LVTH-QVDFLPAFDSVLLMSDGEILRAAPYHQL 838
V+H + + L D + +M G IL+ A H+L
Sbjct: 194 FVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMK 1312
VL IS + + G + I+G +G GKTTL L +P G+I + GK + + L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTI-FSKNTNLPV 77
Query: 1313 REGSLFGQLVKE 1324
RE L G LV+E
Sbjct: 78 RERRL-GYLVQE 88
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 65.1 bits (157), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/179 (34%), Positives = 93/179 (51%), Gaps = 18/179 (10%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQT 704
++ NI+LEV G+KV I G GSGK+TLL AI G +P++ G I + G + +
Sbjct: 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GNIFINGMEVRKIRNYIRYS 77
Query: 705 GSIRENILFGSPMDS--HQYQET--LERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQ 759
++ E G ++ + Y+E L+R ++ L+ L G+ EI R + LS GQ
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGE--EILRRKLYKLSAGQSV 135
Query: 760 RIQLARALYQDADIYLLDDPFSAVDA---HTASSLFNDYVMEALSGKVVLLVTHQVDFL 815
++ + AL +I LD+PF VDA H S +Y GK +LVTH++D L
Sbjct: 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY------GKEGILVTHELDML 188
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
G K+ I+G GSGKTTL A+ L+ P G I ++G
Sbjct: 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFING 64
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 57/200 (28%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694
+ NI+L+++ G+ +A+ G GSGKSTLL I G T G I K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 695 YVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753
V Q A ++ +NI F + +E ++ ++++ + + D + L
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKL-LNRYPWQL 134
Query: 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTH-Q 811
SGGQ+QR+ +ARAL ++ ++ LLD+P S +DA + + ++ G + VTH Q
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ 194
Query: 812 VDFLPAFDSVLLMSDGEILR 831
+ L D + ++ +GEIL+
Sbjct: 195 AEALAMADRIAVIREGEILQ 214
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L I+ + G + ++G +GSGK+TL + + +P GKI D K
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEK 65
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 27/217 (12%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHTQGTIQVYGKT---------- 693
++ N+SL+V G+ I G G+GK+ L I G VP + G I + GK
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDS-GRILLDGKDVTDLSPEKHD 73
Query: 694 -AYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751
A+V Q + ++++N+ FG M + ++ +DL++ D +
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEHLLDRNPL----- 126
Query: 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT---ASSLFNDYVMEALSGKVVLLV 808
LSGG++QR+ LARAL + I LLD+P SA+D T A + + V+ + VL +
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLS--VLHKKNKLTVLHI 184
Query: 809 TH-QVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844
TH Q + D + ++ DG++++ ++ E
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVE 221
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300
L +S E G I+G TG+GKT + P G+IL+DGK
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.5 bits (153), Expect = 8e-10, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------YGKT 693
+S+ V G I G GSGKSTL+ I G + +G + YG
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 694 AYVSQTAWIQTGSIRENILFG------SPMDSHQY-------QETLERCSLIKDLELLPY 740
++ ++ EN+L G SP++S Y +E +E+ I + L +
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
+ + GE LSGGQ + +++ RAL + + ++D+P + V A +FN +
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 801 SGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830
G L++ H++D L D + +M +G+I+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
Score = 33.5 bits (75), Expect = 0.87, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMEL 1310
L G+S + G I+G GSGK+TL + ++ G++ + K EP EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQ-------- 698
+ ++ ++ G +A+ G+ G GKSTLL +LG QG I+VY +V Q
Sbjct: 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81
Query: 699 --TAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG-VNLSG 755
+ G F P SH YQ ++ L Y + T + +R +LSG
Sbjct: 82 SVLDIVLMGRSTHINTFAKP-KSHDYQVAMQA---------LDYLNLTHLAKREFTSLSG 131
Query: 756 GQKQRIQLARALYQDADIYLLDDPFSAVD 784
GQ+Q I +ARA+ + + LLD+P SA+D
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALD 160
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 33/212 (15%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------- 689
++N++L ++ G+ V+I G GSGKST L I T+G + +
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 690 -YGKTAYV-SQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
K +V Q I + EN+ ER + LE L E+
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRK--RALECL---KXAELE 135
Query: 748 ERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS- 801
ER N LSGGQ+QR+ +ARAL + I L D+P A+D+ T + +++ L+
Sbjct: 136 ERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQ--LLKKLNE 193
Query: 802 --GKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
GK V++VTH ++ + ++ + DGE+ R
Sbjct: 194 EDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
LK ++ + G + I G +GSGK+T + L +P G++ +D
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYID 65
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------YGKT 693
+S+ V G I G GSGKSTL+ I G + +G + YG
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 694 AYVSQTAWIQTGSIRENILFG------SPMDSHQY-------QETLERCSLIKDLELLPY 740
++ ++ EN+L G SP++S Y +E +E+ I + L +
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
+ + GE LSGGQ + +++ RAL + + ++D P + V A +FN +
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKA 201
Query: 801 SGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830
G L++ H++D L D + +M +G+I+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
Score = 33.5 bits (75), Expect = 0.87, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMEL 1310
L G+S + G I+G GSGK+TL + ++ G++ + K EP EL
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 26/205 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG--EVPHTQGTIQVYGKT---------- 693
++ ISL V+ G+ V+I G GSGKSTLL ILG + P T+G + + GK
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLY-ILGLLDAP-TEGKVFLEGKEVDYTNEKELS 77
Query: 694 -------AYVSQTAW-IQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
+V Q + I + EN++ +E ER + L L GD +
Sbjct: 78 LLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL--LSELGLGD--K 133
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVV 805
+ + LSGG++QR+ +ARAL + + D+P +D+ + + ++ G +
Sbjct: 134 LSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSI 193
Query: 806 LLVTHQVDFLPAFDSVLLMSDGEIL 830
++VTH+ + L M DG+++
Sbjct: 194 VMVTHERELAELTHRTLEMKDGKVV 218
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMEL 1310
+LKGIS + + G + I+G +GSGK+TL L L P GK+ ++GK +Y EL
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 45/218 (20%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------- 689
++N++L ++ G+ V+I G GSGKST+L I T+G + +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 690 -YGKTAYV-SQTAWIQTGSIRENI------LFGSPMDSHQYQETLERCSLIKDLELLPYG 741
K +V Q I + EN+ + M + ++ C + +LE
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----- 135
Query: 742 DNTEIGERGVN-----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV 796
ER N LSGGQ+QR+ +ARAL + I L D P A+D+ T + +
Sbjct: 136 ------ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ--L 187
Query: 797 MEALS---GKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831
++ L+ GK V++VTH ++ + ++ + DGE+ R
Sbjct: 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVD 1298
LK ++ + G + I+G +GSGK+T+ + L +P G++ +D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID 65
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV---------------YGKT 693
+S+ V G I G GSGKSTL+ I G + +G + YG
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85
Query: 694 AYVSQTAWIQTGSIRENILFG------SPMDSHQY-------QETLERCSLIKDLELLPY 740
++ ++ EN+L G SP++S Y +E +E+ I + L +
Sbjct: 86 RTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH 145
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL 800
+ + GE LSGGQ + +++ RAL + + ++D+P + V A +FN +
Sbjct: 146 LYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA 201
Query: 801 SGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830
G L++ H++D L D + +M +G+I+
Sbjct: 202 KGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMEL 1310
L G+S + G I+G GSGK+TL + ++ G++ + K EP EL
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
++ I++ +R G+ V + G GSGKST L + +G I + G T
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT---NLN 96
Query: 706 SIRENI--------LFG----------SPMDSHQY-QETLERCSLIKDLELLPYGDNTEI 746
+RE + LF +PM ++ +E E K +ELL D +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE----AKAMELL---DKVGL 149
Query: 747 GERGV----NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
++ +LSGGQ QR+ +ARAL + I L D+P SA+D + + A G
Sbjct: 150 KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 803 KVVLLVTHQVDFLPAF-DSVLLMSDGEIL 830
+++VTH++ F D VL M G I+
Sbjct: 210 MTMVVVTHEMGFAREVGDRVLFMDGGYII 238
Score = 35.0 bits (79), Expect = 0.32, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
VLKGI+ G + ++G +GSGK+T L L + G+I++DG
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 54/202 (26%), Positives = 93/202 (46%), Gaps = 24/202 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692
+R +SLEV+ G+ + + G G GK+T L I G ++G I + K
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 693 ----TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
A V Q+ A ++ +NI F + QE +R + +L G +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLTELLN 134
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY-VMEALSGKVVL 806
+ LSGGQ+QR+ L RA+ + ++L+D+P S +DA + + ++ G +
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 807 LVTH-QVDFLPAFDSVLLMSDG 827
VTH QV+ + D + +M+ G
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRG 216
Score = 30.0 bits (66), Expect = 8.0, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL 1301
++ +S + G + ++G +G GKTT + L EP+RG+I + KL
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKL 66
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703
+ N+SL + G+ + + G GSGKSTLL + G + T G + G K Y
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-------- 76
Query: 704 TGSIRENI--LFGSPMDSHQYQETLERCSL-IKDLELLPYGDNTEIGERGVN-------- 752
IR NI F P D + + + +K+ P D + ++ +
Sbjct: 77 --EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS 132
Query: 753 --------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
LSGG+K+R+ +A + + DI +LD+P +D + L GK
Sbjct: 133 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 192
Query: 805 VLLVTHQVD-FLPAFDSVLLMSDGE 828
V+L++H ++ + D V+++ G+
Sbjct: 193 VILISHDIETVINHVDRVVVLEKGK 217
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 1234 VGKVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290
+G++++ ++ + +PL L+ +S G + + G TGSGK+TL + LIEP
Sbjct: 2 MGRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 1291 ARGKILVDGK 1300
G +L DG+
Sbjct: 62 TSGDVLYDGE 71
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 61.2 bits (147), Expect = 4e-09, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703
+ N+SL + G+ + + G GSGKSTLL + G + T G + G K Y
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY-------- 74
Query: 704 TGSIRENI--LFGSPMDSHQYQETLERCSL-IKDLELLPYGDNTEIGERGVN-------- 752
IR NI F P D + + + +K+ P D + ++ +
Sbjct: 75 --EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDS 130
Query: 753 --------LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
LSGG+K+R+ +A + + DI +LD+P +D + L GK
Sbjct: 131 FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKT 190
Query: 805 VLLVTHQVD-FLPAFDSVLLMSDGE 828
V+L++H ++ + D V+++ G+
Sbjct: 191 VILISHDIETVINHVDRVVVLEKGK 215
Score = 39.7 bits (91), Expect = 0.012, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1236 KVDICDLQIRYRPDSPL---VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPAR 1292
++++ ++ + +PL L+ +S G + + G TGSGK+TL + LIEP
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 1293 GKILVDGK 1300
G +L DG+
Sbjct: 62 GDVLYDGE 69
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 33/225 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHT------------QGTIQV--- 689
+ N+++ + G++ I G G+GK+T + I G +VP T G + V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 690 YGKTAYVSQT-AWIQTGSIRENILF---GSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
K V QT A + ENI F M + ++ +E + I D+ +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV------- 133
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEALSG 802
+ LSGGQ+QR+ LARAL +D + LLD+PFS +DA +A +L + +++ G
Sbjct: 134 LNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE--VQSRLG 191
Query: 803 KVVLLVTHQ-VDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846
+L+V+H D D V ++ G++++ L + Q
Sbjct: 192 VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1252 LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL 1301
+ L ++ E G + GI+G +G+GKTT + L P+ G++ D +L
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL 68
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 21/192 (10%)
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQT---GSIR 708
E++ G+ + I G G GK+T + + G T+G I+ AY Q +I+ G++
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQ--YIKADYEGTVY 365
Query: 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLARAL 767
E + S +D+ + + L+K L ++ ++ +R VN LSGG+ QR+ +A L
Sbjct: 366 ELL---SKIDASKLNSNFYKTELLKPLGII------DLYDREVNELSGGELQRVAIAATL 416
Query: 768 YQDADIYLLDDPFSAVDAHT--ASSLFNDYVMEALSGKVVLLVTHQV---DFLPAFDSVL 822
+DADIYLLD+P + +D A S ++ E + K L+V H V D++ V
Sbjct: 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEK-NEKTALVVEHDVLXIDYVSDRLXVF 475
Query: 823 LMSDGEILRAAP 834
G+ RA P
Sbjct: 476 EGEPGKYGRALP 487
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE-VPHT-------QGTIQVYGKTAYVSQTAWIQT 704
V+ G V I G G+GKST + + G+ +P+ G I+ + + ++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 705 GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNT-------------EIGERGV 751
G IR P+ QY + + + K +ELL D T + ER +
Sbjct: 104 GEIR-------PVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI 156
Query: 752 -NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
+LSGG+ QR+ +A AL ++A Y D+P S +D + + GK VL+V H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 811 QVDFLPAFDSVLLMSDGE 828
+ L ++ + GE
Sbjct: 217 DLAVLDYLSDIIHVVYGE 234
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVK 1323
G IGIVG G GKTT L + EP GKI D +A Y EG+++ L K
Sbjct: 312 GEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVA-YKPQYIKADYEGTVYELLSK 370
Query: 1324 EYWSHLHS 1331
S L+S
Sbjct: 371 IDASKLNS 378
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG- 705
++I+L++ G+ V G G GKSTLL I G T G + + K + A G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 706 -----------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
S+ EN+ FG + + + +R + + ++ L + + + LS
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALS 135
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTH-QV 812
GGQ+QR+ + R L + ++LLD+P S +DA + + + G+ ++ VTH QV
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 813 DFLPAFDSVLLMSDGEI 829
+ + D ++++ G +
Sbjct: 196 EAMTLADKIVVLDAGRV 212
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 18/197 (9%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG- 705
++I+L++ G+ V G G GKSTLL I G T G + + K + A G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 706 -----------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
S+ EN+ FG + + + +R + + ++ L + + + LS
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALS 135
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTH-QV 812
GGQ+QR+ + R L + ++LLD+P S +DA + + + G+ ++ VTH QV
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 813 DFLPAFDSVLLMSDGEI 829
+ + D ++++ G +
Sbjct: 196 EAMTLADKIVVLDAGRV 212
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 88/212 (41%), Gaps = 24/212 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
++ I++ +R G+ V + G GSGKST L + +G I + G T
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDT---NLN 75
Query: 706 SIRENI--------LFG----------SPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
+RE + LF +PM ++ ++ L+ + D
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLL 807
+LSGGQ QR+ +ARAL + I L D+P SA+D + + A G +++
Sbjct: 136 PD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVV 193
Query: 808 VTHQVDFLPAF-DSVLLMSDGEILRAAPYHQL 838
VTH++ F D VL M G I+ L
Sbjct: 194 VTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 34.3 bits (77), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1253 VLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDG 1299
VLKGI+ G + ++G +GSGK+T L L + G+I++DG
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 64
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 18/197 (9%)
Query: 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG- 705
++I+L++ G+ V G G GKSTLL I G T G + + K + A G
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79
Query: 706 -----------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754
S+ EN+ FG + + + +R + + ++ L + + + LS
Sbjct: 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH----LLDRKPKALS 135
Query: 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLLVTH-QV 812
GGQ+QR+ + R L + ++LLD P S +DA + + + G+ ++ VTH QV
Sbjct: 136 GGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV 195
Query: 813 DFLPAFDSVLLMSDGEI 829
+ + D ++++ G +
Sbjct: 196 EAMTLADKIVVLDAGRV 212
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 33/217 (15%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILG-EVPHT------------QGTIQV--- 689
+ N+++ + G++ I G G+GK+T + I G +VP T G + V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 690 YGKTAYVSQT-AWIQTGSIRENILF---GSPMDSHQYQETLERCSLIKDLELLPYGDNTE 745
K V QT A + ENI F M + ++ +E + I D+ +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHV------- 133
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAH---TASSLFNDYVMEALSG 802
+ LSG Q+QR+ LARAL +D + LLD+PFS +DA +A +L + +++ G
Sbjct: 134 LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE--VQSRLG 191
Query: 803 KVVLLVTHQ-VDFLPAFDSVLLMSDGEILRAAPYHQL 838
+L+V+H D D V ++ G++++ L
Sbjct: 192 VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 1252 LVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKL 1301
+ L ++ E G + GI+G +G+GKTT + L P+ G++ D +L
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL 68
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 742 DNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
D G+ V+LSGGQ+QR+ +ARAL + D+ L D+P SA+D + A
Sbjct: 143 DERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE 202
Query: 802 GKVVLLVTHQVDFLPAFDS-VLLMSDGEILRAAPYHQLLASSK 843
GK +++VTH++ F S V+ + G+I Q+ + +
Sbjct: 203 GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQ 245
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 107/239 (44%), Gaps = 38/239 (15%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----TAYVSQTAW 701
++ IS ++ G K + G G+GK+TLL + P T GT+ ++GK Y ++T
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAET-- 94
Query: 702 IQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN--------- 752
+R++I F S ++QE ++ G +I + N
Sbjct: 95 -----VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV 149
Query: 753 ------------LSGGQKQRIQLARALYQDADIYLLDDPFSAVD--AHTASSLFNDYVME 798
LS G+KQR+ +ARAL + +LD+P + +D A + D + +
Sbjct: 150 GXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSD 209
Query: 799 ALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS---SKEFQELVSAHK 853
+ + VTH ++ + A F +LL+ DG+ ++ +L S S+ FQ+ V+ +
Sbjct: 210 SYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENXSRFFQKNVAVQR 268
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 23/204 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
++ I++ ++ G+ AI G G GKSTL G + + G I K S+ ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMK-- 81
Query: 706 SIRENI--LFGSP----MDSHQYQETLERCSLIK--DLELLPYGDNTEIGERGVN----- 752
+RE+I +F P + YQ+ +K + E+ DN + G+
Sbjct: 82 -LRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA-LKRTGIEHLKDK 139
Query: 753 ----LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYV-MEALSGKVVLL 807
LS GQK+R+ +A L + + +LD+P + +D S + V M+ G +++
Sbjct: 140 PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199
Query: 808 VTHQVDFLPAF-DSVLLMSDGEIL 830
TH +D +P + D+V +M +G ++
Sbjct: 200 ATHDIDIVPLYCDNVFVMKEGRVI 223
Score = 39.3 bits (90), Expect = 0.016, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEP- 1307
D LKGI+ + G I+G G GK+TL +++P+ G+IL D K +Y
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 1308 -MELMKREGSLF 1318
M+L + G +F
Sbjct: 79 IMKLRESIGIVF 90
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA------------- 694
++L ++ G+ + + G G GK+T L I G T+G I +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 89
Query: 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLER----CSLIKDLELLPYGDNTEIGERG 750
+ S W ++ ENI F + E +R L++ ELL
Sbjct: 90 FQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL--------NRYP 140
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLL 807
LSGGQ+QR+ +ARA+ + D+ L+D+P S +DA ++ + ++ L K+ +
Sbjct: 141 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIY 198
Query: 808 VTH-QVDFLPAFDSVLLMSDGEILR 831
VTH QV+ + D + +M+ G++L+
Sbjct: 199 VTHDQVEAMTMGDRIAVMNRGQLLQ 223
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 32/205 (15%)
Query: 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA------------- 694
++L ++ G+ + + G G GK+T L I G T+G I +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88
Query: 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLER----CSLIKDLELLPYGDNTEIGERG 750
+ S W ++ ENI F + E +R L++ ELL
Sbjct: 89 FQSYAVWPHM-TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELL--------NRYP 139
Query: 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV---VLL 807
LSGGQ+QR+ +ARA+ + D+ L+D+P S +DA ++ + ++ L K+ +
Sbjct: 140 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAE--IKKLQQKLKVTTIY 197
Query: 808 VTH-QVDFLPAFDSVLLMSDGEILR 831
VTH QV+ + D + +M+ G++L+
Sbjct: 198 VTHDQVEAMTMGDRIAVMNRGQLLQ 222
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 31/187 (16%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG--- 705
+S EVR G+ + + G G+GKSTLLA + G + +G+IQ G+ AW T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL----EAWSATKLAL 73
Query: 706 -----SIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
S ++ F +P + HQ+ +T R L+ D+ D+ ++G LSGG
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALDD-KLGRSTNQLSGG 130
Query: 757 QKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLL 807
+ QR++LA + Q + LLD P +++D S+L D ++ ALS G +++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSAL--DKILSALSQQGLAIVM 188
Query: 808 VTHQVDF 814
+H ++
Sbjct: 189 SSHDLNH 195
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 24/204 (11%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692
++++SLE++ G+ + + G G GK+T L I G T+G I +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 693 ----TAYVSQT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIG 747
A V Q+ A ++ +NI F + QE +R + + G +
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEX----LGLTELLN 137
Query: 748 ERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY-VMEALSGKVVL 806
+ LSGGQ+QR+ L RA+ + ++L D+P S +DA + ++ G +
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 807 LVTH-QVDFLPAFDSVLLMSDGEI 829
VTH QV+ D + + + GE+
Sbjct: 198 YVTHDQVEAXTXGDRIAVXNKGEL 221
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 1234 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARG 1293
+G ++ + I R +K +S + G + ++G +G GKTT + L EP RG
Sbjct: 2 IGXAEVKLINIWKRFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 1294 KILVDGKL 1301
+I ++ L
Sbjct: 62 QIYIEDNL 69
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-----------QVYGKTAYVS 697
+S EV+ G+ VA+ G G GK+T L + G T G I Y + V
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81
Query: 698 QT-AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
Q A ++ ENI F E +R I L+ DN + + LSGG
Sbjct: 82 QNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI---DNL-LDRKPTQLSGG 137
Query: 757 QKQRIQLARALYQDADIYLLDDPFSAVDAH 786
Q+QR+ LARAL + + L D+P S +DA+
Sbjct: 138 QQQRVALARALVKQPKVLLFDEPLSNLDAN 167
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 92/187 (49%), Gaps = 31/187 (16%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG--- 705
+S EVR G+ + + G G+GKSTLLA + G + +G+IQ G+ AW T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPL----EAWSATKLAL 73
Query: 706 -----SIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
S ++ F +P + HQ+ +T R L+ D+ D+ ++G LSGG
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALDD-KLGRSTNQLSGG 130
Query: 757 QKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLL 807
+ QR++LA + Q + LLD P ++D S+L D ++ ALS G +++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSAL--DKILSALSQQGLAIVM 188
Query: 808 VTHQVDF 814
+H ++
Sbjct: 189 SSHDLNH 195
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 89/182 (48%), Gaps = 27/182 (14%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI--------QVYGKTAY 695
P + I++ + G V G G GK+TLL I + +G I +V GK +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFF 82
Query: 696 VSQTAWI-QTGSIRENI-----LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER 749
+ + + + S+ + + L+G ++ ++ + LE ++ DL+ ++GE
Sbjct: 83 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-DLK-------KKLGE- 133
Query: 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
LS G +R+QLA L +A+IY+LDDP A+D + + ++E L K +++++
Sbjct: 134 ---LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS-ILEILKEKGIVIIS 189
Query: 810 HQ 811
+
Sbjct: 190 SR 191
Score = 40.4 bits (93), Expect = 0.007, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKI 1295
K++I DL + Y D P VL+ I+ T E G+ + G G GKTTL + ++P +G+I
Sbjct: 10 KLEIRDLSVGY--DKP-VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1296 LVDG 1299
+ +G
Sbjct: 67 IYNG 70
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 29/185 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG--- 705
+S EVR G+ + + G G+GKSTLLA G +G+IQ G+ AW T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL----EAWSATKLAL 73
Query: 706 -----SIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
S ++ F +P + HQ+ +T R L+ D+ D+ ++G LSGG
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALDD-KLGRSTNQLSGG 130
Query: 757 QKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
+ QR++LA + Q + LLD+P +++D S+L D ++ ALS + + +V
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALSQQGLAIVX 188
Query: 810 HQVDF 814
D
Sbjct: 189 SSHDL 193
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 36/216 (16%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------ 693
++ IS E+ G+ + G G+GK+T L I + + G + V+GK
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90
Query: 694 AYVSQTAWIQTGSIR-----ENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTE 745
+Y+ + A G+ R E + F + S + +E +ER + I L +
Sbjct: 91 SYLPEEA----GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-------GEK 139
Query: 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVV 805
I +R S G +++ +ARAL + + +LD+P S +D A + + G +
Sbjct: 140 IKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 806 LLVTH---QVDFLPAFDSVLLMSDGEILRAAPYHQL 838
L+ +H +V+FL D + L+ +G I+ +L
Sbjct: 200 LVSSHNMLEVEFL--CDRIALIHNGTIVETGTVEEL 233
Score = 45.1 bits (105), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 1234 VGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARG 1293
+G V + DL R R +LKGIS E G G++G G+GKTT + LI+P+ G
Sbjct: 13 MGAVVVKDL--RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 70
Query: 1294 KILVDGKLAEYDEPMELMK 1312
+ V GK +EP E+ K
Sbjct: 71 IVTVFGKNV-VEEPHEVRK 88
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 43/243 (17%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705
+ ++SL + G+ VAI G G+GKSTLL + G + + G + G+ Q +
Sbjct: 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86
Query: 706 --------------SIRENILFG-SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERG 750
S+ E I G +P Q ++ L+ +++ D + +R
Sbjct: 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQ--------QVMAQTDCLALAQRD 138
Query: 751 VN-LSGGQKQRIQLARALYQ------DADIYLLDDPFSAVD----AHTASSLFNDYVMEA 799
LSGG++QR+QLAR L Q LD+P SA+D HT L E
Sbjct: 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 800 LSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAPYHQLLASSKEFQEL-----VSAHK 853
L+ V V H ++ + D ++L++ G+++ ++L + Q VS H
Sbjct: 199 LA---VCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHP 255
Query: 854 ETA 856
E+A
Sbjct: 256 ESA 258
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 89/213 (41%), Gaps = 35/213 (16%)
Query: 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYVSQT-AWIQTGSIR 708
+ G G+GKS L I G V +G +++ G +V Q A S+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVY 88
Query: 709 ENILFG-----SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763
NI +G + +E E+ + L+ P LSGG++QR+ L
Sbjct: 89 RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------ARLSGGERQRVAL 137
Query: 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV-VLLVTHQVDFLPA---FD 819
ARAL + LLD+P SAVD T L + V +L VTH D + A D
Sbjct: 138 ARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH--DLIEAAMLAD 195
Query: 820 SVLLMSDGEILRAAPYHQLL-ASSKEFQELVSA 851
V +M +G I+ +L A + E E +SA
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSA 228
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 51.2 bits (121), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 31/187 (16%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG--- 705
+S EVR G+ + + G G+GKSTLLA G +G+IQ G+ AW T
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPL----EAWSATKLAL 73
Query: 706 -----SIRENILFGSP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756
S ++ F +P + HQ+ +T R L+ D+ D+ ++G LSGG
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKT--RTELLNDVAGALALDD-KLGRSTNQLSGG 130
Query: 757 QKQRIQLARALYQ-------DADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLL 807
+ QR++LA + Q + LLD+P +++D S+L D ++ AL G ++
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSAL--DKILSALCQQGLAIVX 188
Query: 808 VTHQVDF 814
+H ++
Sbjct: 189 SSHDLNH 195
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 29/191 (15%)
Query: 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT----QGTIQVYGKT----------- 693
ISL++ AI GE SGKST++ A+ +P G + GK
Sbjct: 27 ISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRK 86
Query: 694 ------AYVSQTAWIQTGSIRENI-LFGSPMDSH----QYQETLERCSLIKDLELLPYGD 742
A V Q A + I F +++H + E +E+ S + L ++
Sbjct: 87 IRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIEKAS--EKLRMVRLNP 144
Query: 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
+ + LSGG KQR+ +A AL D + +LD+P SA+D T + +
Sbjct: 145 EAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKML 204
Query: 803 KVVLL-VTHQV 812
K+ L+ VTH +
Sbjct: 205 KITLIFVTHDI 215
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 92/193 (47%), Gaps = 26/193 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAIL-GEVPHTQG-TIQVYGKTAYVSQTAWIQ 703
+ L ++ ++ ICG G GKSTL+ AI G+V G Q +T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGFPTQEECRTVYV------- 500
Query: 704 TGSIRENILFGSPMDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVN-LSGGQK 758
E+ + G+ D+ ++ + IKD +L+ +G E+ ++ LSGG K
Sbjct: 501 -----EHDIDGTHSDTSVLDFVFESGVGTKEAIKD-KLIEFGFTDEMIAMPISALSGGWK 554
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
++ LARA+ ++ADI LLD+P + +D + L N Y+ G + ++H FL
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN-YL--NTCGITSITISHDSVFLDNV 611
Query: 819 DSVLLMSDGEILR 831
++ +G LR
Sbjct: 612 CEYIINYEGLKLR 624
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 698 QTAWIQTGSIREN-------ILFGSPMDSHQY-----QETLERCSLIK-DLELLPYGDNT 744
AWI G + E+ + + S Q+ +E E CS++ D E++ +
Sbjct: 841 DNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS--- 897
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804
R LSGGQK ++ LA +Q + +LD+P + +D + +L ++ G V
Sbjct: 898 ----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGAL--SKALKEFEGGV 951
Query: 805 VLLVTHQVDFLPAF-DSVLLMSDGEI 829
+ ++TH +F + V + DG +
Sbjct: 952 I-IITHSAEFTKNLTEEVWAVKDGRM 976
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW 701
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G + + + AY+ Q A+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
Query: 702 IQTGSIRENILFGSPMDSHQY-------QETLERCS 730
E+ L +P + Q+ +ET++R +
Sbjct: 747 AHI----ESHLDKTPSEYIQWRFQTGEDRETMDRAN 778
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYGKT---------- 693
+R +SL+V PG+ AI G GSGKSTL A + G + T GT++ GK
Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 76
Query: 694 ---AYVSQTAWIQTGSIRENILFGSPMD---SHQYQETLERCSLIKDLE----LLPYGDN 743
+++ ++ + + ++ S++ QETL+R +E LL ++
Sbjct: 77 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED 136
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
V SGG+K+R + + + ++ +LD+ S +D A + D V GK
Sbjct: 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI-DALKVVADGVNSLRDGK 195
Query: 804 -VVLLVTHQ---VDFLPAFDSVLLMSDGEILRAAPY 835
++VTH +D++ D V ++ G I+++ +
Sbjct: 196 RSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDF 230
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 28/216 (12%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYGKT---------- 693
+R +SL+V PG+ AI G GSGKSTL A + G + T GT++ GK
Sbjct: 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRA 95
Query: 694 ---AYVSQTAWIQTGSIRENILFGSPMD---SHQYQETLERCSLIKDLE----LLPYGDN 743
+++ ++ + + ++ S++ QETL+R +E LL ++
Sbjct: 96 GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED 155
Query: 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK 803
V SGG+K+R + + + ++ +LD+ S +D A + D V GK
Sbjct: 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI-DALKVVADGVNSLRDGK 214
Query: 804 -VVLLVTHQ---VDFLPAFDSVLLMSDGEILRAAPY 835
++VTH +D++ D V ++ G I+++ +
Sbjct: 215 RSFIIVTHYQRILDYIKP-DYVHVLYQGRIVKSGDF 249
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAIL-GEVPHTQG-TIQVYGKTAYVSQTAWIQ 703
+ L ++ ++ ICG G GKSTL AI G+V G Q +T YV
Sbjct: 451 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQV---DGFPTQEECRTVYV------- 500
Query: 704 TGSIRENILFGSPMDSHQ----YQETLERCSLIKDLELLPYGDNTE-IGERGVNLSGGQK 758
E+ + G+ D+ ++ + IKD +L+ +G E I LSGG K
Sbjct: 501 -----EHDIDGTHSDTSVLDFVFESGVGTKEAIKD-KLIEFGFTDEXIAXPISALSGGWK 554
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
++ LARA+ ++ADI LLD+P + +D + L N Y+ G + ++H FL
Sbjct: 555 XKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN-YLN--TCGITSITISHDSVFLDNV 611
Query: 819 DSVLLMSDGEILR 831
++ +G LR
Sbjct: 612 CEYIINYEGLKLR 624
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW 701
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G + + + AY+ Q A+
Sbjct: 687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 746
Query: 702 IQTGS 706
S
Sbjct: 747 AHIES 751
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 723 QETLERCSLIK-DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781
+E E CS + D E++ + R LSGGQK ++ LA +Q + +LD+P +
Sbjct: 878 KEIEEHCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930
Query: 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDG 827
+D + +L ++ G V+ ++TH +F + V + DG
Sbjct: 931 YLDRDSLGAL--SKALKEFEGGVI-IITHSAEFTKNLTEEVWAVKDG 974
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 26/193 (13%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAIL-GEVPHTQG-TIQVYGKTAYVSQTAWIQ 703
+ L ++ ++ ICG G GKSTL AI G+V G Q +T YV
Sbjct: 445 LNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQV---DGFPTQEECRTVYV------- 494
Query: 704 TGSIRENILFGSPMDSHQ----YQETLERCSLIKDLELLPYGDNTE-IGERGVNLSGGQK 758
E+ + G+ D+ ++ + IKD +L+ +G E I LSGG K
Sbjct: 495 -----EHDIDGTHSDTSVLDFVFESGVGTKEAIKD-KLIEFGFTDEXIAXPISALSGGWK 548
Query: 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818
++ LARA+ ++ADI LLD+P + +D + L N Y+ G + ++H FL
Sbjct: 549 XKLALARAVLRNADILLLDEPTNHLDTVNVAWLVN-YLN--TCGITSITISHDSVFLDNV 605
Query: 819 DSVLLMSDGEILR 831
++ +G LR
Sbjct: 606 CEYIINYEGLKLR 618
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW 701
P + +I+ + ++A+ G G+GKSTL+ + GE+ T G + + + AY+ Q A+
Sbjct: 681 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAF 740
Query: 702 IQTGS 706
S
Sbjct: 741 AHIES 745
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 723 QETLERCSLIK-DLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781
+E E CS + D E++ + R LSGGQK ++ LA +Q + +LD+P +
Sbjct: 872 KEIEEHCSXLGLDPEIVSHS-------RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 924
Query: 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDG 827
+D + +L ++ G V+ ++TH +F + V + DG
Sbjct: 925 YLDRDSLGAL--SKALKEFEGGVI-IITHSAEFTKNLTEEVWAVKDG 968
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 19/142 (13%)
Query: 652 EVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-AYVSQTAWIQTGSIREN 710
E + G+ + I G G GK+T ++GE+ +G++ + +Y Q + +
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQ 349
Query: 711 ILFGSPMDSHQ-----YQETLERCSLIKDLELLPYGDNTEIGERGVN-LSGGQKQRIQLA 764
L + D+ ++E +R +L + LE VN LSGG+ Q++ +A
Sbjct: 350 YLENASKDALSTSSWFFEEVTKRLNLHRLLE------------SNVNDLSGGELQKLYIA 397
Query: 765 RALYQDADIYLLDDPFSAVDAH 786
L ++AD+Y+LD P S +D
Sbjct: 398 ATLAKEADLYVLDQPSSYLDVE 419
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQ- 811
LSGG QR+ +A +L ++AD+Y+ D P S +D ++ + E L K V++V H
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK-AIRELLKNKYVIVVDHDL 197
Query: 812 --VDFL 815
+D+L
Sbjct: 198 IVLDYL 203
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 43.5 bits (101), Expect = 8e-04, Method: Composition-based stats.
Identities = 50/182 (27%), Positives = 82/182 (45%), Gaps = 27/182 (14%)
Query: 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-----QVYGKTAYVSQ-- 698
++ I L+V GQ V + G G+GK+T L+AI G V +G I + K A+V
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 699 -TAWIQTG-------SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGER- 749
A + G ++ EN+ G+ + + +E ++R DLE + + + ER
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAY--NRKDKEGIKR-----DLEWI-FSLFPRLKERL 133
Query: 750 ---GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVL 806
G LSGG++Q + + RAL + D+P + S +F G +L
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 807 LV 808
LV
Sbjct: 194 LV 195
Score = 37.0 bits (84), Expect = 0.078, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 1254 LKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
+KGI G + ++G G+GKTT A+ L+ +GKI+ +G+ ++P ++ R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT-NKPAHVINR 80
Query: 1314 EG 1315
G
Sbjct: 81 XG 82
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 746 IGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVMEALSG 802
+G+ LSGG+ QRI+LA L + +Y+LD+P + + L V +G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 803 KVVLLVTHQVDFLPAFDSVLLMSDG 827
V+ V H++ + A D VL + G
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPG 808
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 752 NLSGGQKQRIQLARALYQD--ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVT 809
LS G+ QR++LA LY + +Y+LD+P + + +L + G + +V
Sbjct: 379 TLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVE 438
Query: 810 HQVDFLPAFDSVLLMS------DGEILRAAPYHQL 838
H +D + D ++ + GEIL + P L
Sbjct: 439 HDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGL 473
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDAD---IYLLDDPFSAVDAHTASSLFNDYVMEALS 801
++G+ LSGG+ QR++LA L++ ++ +Y+LD+P + + + L + +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 802 GKVVLLVTHQVDFLPAFDSVL 822
G VL++ H +D + D ++
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 30.0 bits (66), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 663 GEVGSGKSTLLAAILGEVPHTQG-TIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSH- 720
GE G+GK+TL+ + G + +G I + + A G++R+ LF +
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ--LFFKKIRGQF 442
Query: 721 ---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777
Q+Q + + I D+ I + +LSGG+ QR+ + AL ADIYL+D
Sbjct: 443 LNPQFQTDVVKPLRIDDI----------IDQEVQHLSGGELQRVAIVLALGIPADIYLID 492
Query: 778 DPFSAVDAHT---ASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817
+P + +D+ S + +++ + K +V H DF+ A
Sbjct: 493 EPSAYLDSEQRIICSKVIRRFILH--NKKTAFIVEH--DFIMA 531
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 52/168 (30%)
Query: 654 RPGQKVAICGEVGSGKSTLLAAILG----------EVPHTQGTIQVYG------------ 691
RPGQ + + G G GKST L + G + P Q I+ +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 692 --------KTAYVSQTAWIQTGSIREN------ILFGSPMDSHQYQETLERCSLIK-DLE 736
K YV G +++ + SP D +Y + L+ +++K D+E
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIE 220
Query: 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784
LSGG+ QR + + Q+AD+Y+ D+P S +D
Sbjct: 221 ---------------KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDAD---IYLLDDPFSAVDAHTASSLFNDYVMEALS 801
++G+ LSGG+ QR++LA L++ ++ +Y+LD+P + + + L + +
Sbjct: 536 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 802 GKVVLLVTHQVDFLPAFDSVL 822
G VL++ H +D + D ++
Sbjct: 596 GDTVLVIEHNLDVIKTADYII 616
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 745 EIGERGVNLSGGQKQRIQLARALYQDAD---IYLLDDPFSAVDAHTASSLFNDYVMEALS 801
++G+ LSGG+ QR++LA L++ ++ +Y+LD+P + + + L + +
Sbjct: 838 KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 802 GKVVLLVTHQVDFLPAFDSVL 822
G VL++ H +D + D ++
Sbjct: 898 GDTVLVIEHNLDVIKTADYII 918
Score = 30.0 bits (66), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL 677
++N+S+++ G VA+ G GSGKSTL+ +L
Sbjct: 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 39.3 bits (90), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 21/144 (14%)
Query: 682 HTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPY 740
+ + T++V+ K VS+ + SI E F P+ H+Y TL L
Sbjct: 805 YNRETLEVHYKGKTVSEVLDM---SIEEAAEFFEPIAGVHRYLRTLVDVGL--------- 852
Query: 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVM 797
+G+ LSGG+ QR++LA L + + +Y+LD+P + + L N V+
Sbjct: 853 -GYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLN--VI 909
Query: 798 EAL--SGKVVLLVTHQVDFLPAFD 819
L G V+++ H +D + D
Sbjct: 910 NGLVDKGNTVIVIEHNLDVIKTSD 933
Score = 33.1 bits (74), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 753 LSGGQKQRIQLARALYQD--ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
LSGG+ QRI+LA + +Y+LD+P + L G +++V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 811 QVDFLPAFDSVLLMS------DGEILRAAPYHQLL 839
D + D ++ + G I+ + PY +LL
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.4 bits (85), Expect = 0.061, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 753 LSGGQKQ--RIQLARALYQDA----DIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKV 804
LSGG++ I LA +L + A D + +D+ FS++D + + V++ L KV
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS--VLKELERLNKV 337
Query: 805 VLLVTHQVDFLPAFDSVLLMSDGEIL 830
++ +TH +F AFD L ++ G ++
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 37.0 bits (84), Expect = 0.074, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 753 LSGGQKQ--RIQLARALYQDA----DIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKV 804
LSGG++ I LA +L + A D + +D+ FS++D + + V++ L KV
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIAS--VLKELERLNKV 337
Query: 805 VLLVTHQVDFLPAFDSVLLMSDGEIL 830
++ +TH +F AFD L ++ G ++
Sbjct: 338 IVFITHDREFSEAFDRKLRITGGVVV 363
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 745 EIGERGVNLSGGQKQRIQLARALYQ---DADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801
++G+ LSGG+ QRI+LA L + +Y+LD+P + L
Sbjct: 798 KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR 857
Query: 802 GKVVLLVTHQVDFLPAFDSVL 822
G V+++ H +D + D ++
Sbjct: 858 GNTVIVIEHNLDVIKNADHII 878
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 753 LSGGQKQRIQLARALYQD--ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTH 810
LSGG+ QRI+LA + IY+LD+P + L G V++V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 811 QVDFLPAFDSVL 822
+ + D ++
Sbjct: 525 DEEVIRNADHII 536
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 78 QKVAAVVNGCLGIVYLCLATWILEEKLRKTHTALPLNWW 116
Q + V G G++Y L+ W+ EE++ KTH A +WW
Sbjct: 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIA---HWW 180
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 659 VAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689
+ + GE GSGK+TL+ A++ E+P Q I +
Sbjct: 178 IVVAGETGSGKTTLMKALMQEIPFDQRLITI 208
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685
PT N+ + + + I G G+GKSTLL + E P + G
Sbjct: 5 PTTENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEYPDSFG 46
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689
G+ V +CG GSGK+T + +I+ +P + I +
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
GH + R S KTTL L G I+V G+L E+++ +ELMK+
Sbjct: 31 GHPTYVFTRPNSSKTTLLDEFQSL-----GAIIVKGELDEHEKLVELMKK 75
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
GH + R S KTTL L G I+V G+L E+++ +ELMK+
Sbjct: 35 GHPTYVFTRPNSSKTTLLDEFQSL-----GAIIVKGELDEHEKLVELMKK 79
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
GH + R S KTTL L G I+V G+L E+++ +ELMK+
Sbjct: 35 GHPTYVFTRPNSSKTTLLDEFQSL-----GAIIVKGELDEHEKLVELMKK 79
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia Breweri
And Petunia Hybrida Represent Two Distinct Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia Breweri
And Petunia Hybrida Represent Two Distinct Lineages
Length = 318
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313
GH + R S KTTL L G I+V G+L E+++ +ELMK+
Sbjct: 35 GHPTYVFTRPNSSKTTLLDEFQSL-----GAIIVKGELDEHEKLVELMKK 79
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 721 QYQETLERCSLIKDLELLPYGDNTEIGERGVN-----LSGGQKQRIQLARALYQ 769
+Y++T+ RC +KD +L G GE G + GG K+ +A++Q
Sbjct: 104 EYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQ 157
>pdb|1G6O|A Chain A, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1G6O|B Chain B, Crystal Structure Of The Helicobacter Pylori Atpase,
Hp0525, In Complex With Adp
pdb|1NLY|A Chain A, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLY|B Chain B, Crystal Structure Of The Traffic Atpase Of The
Helicobacter Pylori Type Iv Secretion System In Complex
With Atpgammas
pdb|1NLZ|A Chain A, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|B Chain B, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|C Chain C, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|D Chain D, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|E Chain E, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1NLZ|F Chain F, Crystal Structure Of Unliganded Traffic Atpase Of The Type
Iv Secretion System Of Helicobacter Pylori
pdb|1OPX|A Chain A, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
pdb|1OPX|B Chain B, Crystal Structure Of The Traffic Atpase (Hp0525) Of The
Helicobacter Pylori Type Iv Secretion System Bound By
Sulfate
Length = 330
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689
G+ V +CG GSGK+T + +I +P + I +
Sbjct: 171 GKNVIVCGGTGSGKTTYIKSIXEFIPKEERIISI 204
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 30.0 bits (66), Expect = 9.7, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 1249 DSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA--RGKILVDGK 1300
D +LKG++ G ++G G+GK+TL L E RG+IL+DG+
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGE 67
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.0 bits (66), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 653 VRPGQKVAICGEVGSGKSTLLAAILGE----VPHTQGTIQVYGKTAYVSQTAWIQ---TG 705
V G I G+ +GKSTLL +LG+ V H GT + Y + ++ + T
Sbjct: 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTA 289
Query: 706 SIRE 709
+RE
Sbjct: 290 GLRE 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,091,834
Number of Sequences: 62578
Number of extensions: 1431928
Number of successful extensions: 4685
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4283
Number of HSP's gapped (non-prelim): 298
length of query: 1335
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1225
effective length of database: 8,089,757
effective search space: 9909952325
effective search space used: 9909952325
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 57 (26.6 bits)