Query 000713
Match_columns 1335
No_of_seqs 755 out of 4478
Neff 7.1
Searched_HMMs 46136
Date Mon Apr 1 22:30:20 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0054 Multidrug resistance-a 100.0 5E-246 1E-250 2325.5 132.1 1090 232-1324 122-1232(1381)
2 PLN03130 ABC transporter C fam 100.0 2E-185 3E-190 1865.7 155.9 1288 13-1325 9-1332(1622)
3 PLN03232 ABC transporter C fam 100.0 6E-181 1E-185 1822.8 155.3 1287 13-1325 9-1329(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 6E-179 1E-183 1805.5 157.8 1268 27-1326 21-1380(1522)
5 TIGR01271 CFTR_protein cystic 100.0 5E-170 1E-174 1713.0 135.1 1084 232-1326 3-1312(1490)
6 PTZ00243 ABC transporter; Prov 100.0 4E-160 9E-165 1616.3 133.7 1096 230-1326 57-1404(1560)
7 KOG0055 Multidrug/pheromone ex 100.0 4E-106 8E-111 1010.6 95.7 993 298-1325 16-1083(1228)
8 PTZ00265 multidrug resistance 100.0 1.1E-98 2E-103 1010.1 123.3 1021 299-1325 49-1315(1466)
9 PRK11174 cysteine/glutathione 100.0 4.3E-70 9.3E-75 687.9 74.9 548 299-853 11-585 (588)
10 KOG0058 Peptide exporter, ABC 100.0 6.1E-68 1.3E-72 634.6 64.5 544 302-853 139-705 (716)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.8E-66 6.1E-71 663.4 75.8 542 299-850 125-683 (686)
12 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.9E-66 4E-71 667.9 74.3 544 300-849 144-709 (710)
13 TIGR00958 3a01208 Conjugate Tr 100.0 6.3E-66 1.4E-70 660.1 73.7 539 304-848 155-710 (711)
14 COG2274 SunT ABC-type bacterio 100.0 1.7E-65 3.6E-70 639.4 73.3 545 297-850 141-706 (709)
15 TIGR03375 type_I_sec_LssB type 100.0 2.5E-65 5.3E-70 655.5 73.8 537 298-841 135-689 (694)
16 PRK11176 lipid transporter ATP 100.0 2.1E-64 4.6E-69 635.7 74.8 543 301-851 16-578 (582)
17 TIGR01193 bacteriocin_ABC ABC- 100.0 1.5E-64 3.3E-69 649.6 74.5 539 301-849 147-706 (708)
18 TIGR02203 MsbA_lipidA lipid A 100.0 2.6E-64 5.6E-69 633.9 74.7 544 302-851 6-567 (571)
19 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-63 3.6E-68 627.1 74.1 549 300-850 8-573 (576)
20 PRK10790 putative multidrug tr 100.0 6.9E-63 1.5E-67 622.6 76.3 542 302-852 15-575 (592)
21 PRK10789 putative multidrug tr 100.0 1.3E-62 2.7E-67 616.2 72.4 528 320-852 5-550 (569)
22 PRK13657 cyclic beta-1,2-gluca 100.0 6E-62 1.3E-66 613.4 75.6 539 304-852 13-570 (588)
23 PRK11160 cysteine/glutathione 100.0 5.7E-62 1.2E-66 610.4 74.3 539 304-850 10-572 (574)
24 TIGR01842 type_I_sec_PrtD type 100.0 2.6E-62 5.7E-67 610.9 70.0 520 307-840 3-542 (544)
25 TIGR02868 CydC thiol reductant 100.0 3.1E-62 6.8E-67 609.0 69.7 505 304-812 7-529 (529)
26 TIGR01846 type_I_sec_HlyB type 100.0 7.9E-62 1.7E-66 622.7 75.2 548 298-851 127-691 (694)
27 KOG0055 Multidrug/pheromone ex 100.0 8.2E-62 1.8E-66 611.0 65.7 536 306-852 660-1225(1228)
28 TIGR01192 chvA glucan exporter 100.0 2.2E-60 4.7E-65 597.0 76.2 539 304-852 13-570 (585)
29 COG1132 MdlB ABC-type multidru 100.0 1.3E-60 2.9E-65 598.6 73.3 534 308-852 13-564 (567)
30 TIGR02857 CydD thiol reductant 100.0 1.2E-60 2.5E-65 594.9 68.6 506 308-824 1-529 (529)
31 COG4988 CydD ABC-type transpor 100.0 1.7E-59 3.7E-64 553.5 68.3 530 314-853 4-556 (559)
32 PTZ00265 multidrug resistance 100.0 1.6E-59 3.4E-64 631.9 74.3 543 306-851 821-1464(1466)
33 TIGR00957 MRP_assoc_pro multi 100.0 3.4E-58 7.3E-63 625.7 74.5 474 375-851 1029-1519(1522)
34 PLN03130 ABC transporter C fam 100.0 4.3E-57 9.3E-62 613.7 74.8 476 375-853 977-1475(1622)
35 PLN03232 ABC transporter C fam 100.0 1.7E-56 3.8E-61 608.2 72.1 473 376-852 975-1471(1495)
36 KOG0057 Mitochondrial Fe/S clu 100.0 1.4E-56 3E-61 519.4 59.2 519 323-850 43-584 (591)
37 COG4987 CydC ABC-type transpor 100.0 4.2E-56 9.1E-61 515.4 62.5 535 300-850 7-571 (573)
38 PTZ00243 ABC transporter; Prov 100.0 1.7E-55 3.7E-60 597.5 74.0 467 384-852 1031-1546(1560)
39 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.8E-55 8.2E-60 546.8 65.3 508 304-832 11-551 (555)
40 KOG0056 Heavy metal exporter H 100.0 3.7E-56 8E-61 501.9 40.6 530 316-852 221-774 (790)
41 TIGR01271 CFTR_protein cystic 100.0 1.3E-53 2.8E-58 579.1 73.7 475 375-854 949-1454(1490)
42 PRK10522 multidrug transporter 100.0 2.5E-53 5.3E-58 530.3 65.0 504 300-832 3-530 (547)
43 COG4618 ArpD ABC-type protease 100.0 9.5E-54 2.1E-58 490.8 54.3 530 297-841 10-561 (580)
44 TIGR00954 3a01203 Peroxysomal 100.0 1.3E-50 2.9E-55 512.8 59.7 504 311-826 97-653 (659)
45 KOG0054 Multidrug resistance-a 100.0 3.7E-48 8.1E-53 499.5 60.7 473 373-850 880-1373(1381)
46 KOG0058 Peptide exporter, ABC 100.0 3.8E-48 8.3E-53 464.5 43.8 361 956-1325 188-561 (716)
47 COG5265 ATM1 ABC-type transpor 100.0 2.9E-47 6.3E-52 428.6 39.2 459 385-849 16-495 (497)
48 TIGR00956 3a01205 Pleiotropic 100.0 9.3E-45 2E-49 488.9 45.0 190 643-839 74-299 (1394)
49 PRK13549 xylose transporter AT 100.0 2.9E-45 6.3E-50 453.6 32.3 200 626-835 4-227 (506)
50 PRK09700 D-allose transporter 100.0 2.8E-45 6E-50 454.4 31.7 198 626-837 4-231 (510)
51 PRK10261 glutathione transport 100.0 4.1E-45 8.8E-50 461.1 33.6 207 625-839 10-257 (623)
52 PRK15134 microcin C ABC transp 100.0 9E-45 2E-49 451.5 32.1 205 626-838 4-244 (529)
53 COG1123 ATPase components of v 100.0 1E-44 2.2E-49 430.8 30.6 207 626-841 4-245 (539)
54 PRK14257 phosphate ABC transpo 100.0 2.9E-45 6.3E-50 426.9 24.5 263 560-841 23-314 (329)
55 PRK11819 putative ABC transpor 100.0 7.4E-44 1.6E-48 445.1 37.6 207 626-840 5-250 (556)
56 COG1126 GlnQ ABC-type polar am 100.0 2.3E-45 4.9E-50 384.0 19.7 202 627-842 2-227 (240)
57 PRK15064 ABC transporter ATP-b 100.0 9.5E-44 2.1E-48 442.5 37.4 207 627-840 1-242 (530)
58 TIGR02633 xylG D-xylose ABC tr 100.0 3.9E-44 8.4E-49 443.3 32.7 200 628-833 2-223 (500)
59 PRK10762 D-ribose transporter 100.0 3.7E-44 8E-49 443.2 31.8 199 627-835 4-225 (501)
60 PRK15439 autoinducer 2 ABC tra 100.0 7.2E-44 1.6E-48 441.1 34.2 200 625-838 9-227 (510)
61 TIGR03269 met_CoM_red_A2 methy 100.0 4.6E-44 1E-48 444.5 32.2 195 628-836 1-254 (520)
62 PRK10938 putative molybdenum t 100.0 6.4E-44 1.4E-48 440.3 32.9 197 627-838 3-222 (490)
63 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-43 4.9E-48 440.7 38.0 207 626-840 3-248 (552)
64 TIGR00958 3a01208 Conjugate Tr 100.0 6.9E-42 1.5E-46 438.6 49.9 362 958-1325 203-574 (711)
65 PRK10982 galactose/methyl gala 100.0 7.6E-44 1.7E-48 439.6 30.5 196 630-835 1-218 (491)
66 PRK11288 araG L-arabinose tran 100.0 1.5E-43 3.2E-48 437.9 32.6 192 627-832 4-221 (501)
67 TIGR01257 rim_protein retinal- 100.0 1.2E-40 2.7E-45 447.0 61.8 202 626-840 927-1149(2272)
68 TIGR02868 CydC thiol reductant 100.0 2.1E-41 4.6E-46 422.1 50.1 359 965-1325 62-427 (529)
69 COG2274 SunT ABC-type bacterio 100.0 1.4E-40 3.1E-45 415.9 47.9 397 926-1326 159-567 (709)
70 TIGR01193 bacteriocin_ABC ABC- 100.0 3.3E-40 7.1E-45 424.5 49.5 411 906-1325 143-567 (708)
71 PRK10636 putative ABC transpor 100.0 4.2E-41 9.1E-46 424.9 37.9 206 627-839 1-235 (638)
72 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.3E-40 1.6E-44 421.6 49.9 368 958-1326 196-573 (710)
73 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.1E-39 2.5E-44 418.1 51.0 359 958-1326 178-547 (686)
74 COG1132 MdlB ABC-type multidru 100.0 9.5E-40 2.1E-44 410.2 48.0 361 957-1325 53-422 (567)
75 PRK11147 ABC transporter ATPas 100.0 6.5E-41 1.4E-45 424.2 36.6 204 627-840 3-243 (635)
76 PRK10790 putative multidrug tr 100.0 1.8E-39 3.8E-44 410.0 49.1 357 962-1325 71-434 (592)
77 PRK11174 cysteine/glutathione 100.0 3.9E-39 8.6E-44 406.7 49.7 362 958-1325 65-442 (588)
78 COG1125 OpuBA ABC-type proline 100.0 3.3E-42 7.1E-47 366.3 18.1 204 627-842 1-227 (309)
79 COG1116 TauB ABC-type nitrate/ 100.0 6.8E-42 1.5E-46 369.3 19.9 190 627-830 3-212 (248)
80 TIGR02857 CydD thiol reductant 100.0 6.5E-39 1.4E-43 399.7 49.3 363 958-1325 46-415 (529)
81 PRK11160 cysteine/glutathione 100.0 8E-39 1.7E-43 401.6 49.1 361 962-1326 66-434 (574)
82 TIGR02203 MsbA_lipidA lipid A 100.0 9.8E-39 2.1E-43 402.1 50.1 363 958-1325 56-425 (571)
83 TIGR03375 type_I_sec_LssB type 100.0 9.4E-39 2E-43 410.1 50.8 362 960-1326 191-559 (694)
84 COG1135 AbcC ABC-type metal io 100.0 7.5E-42 1.6E-46 374.5 18.4 208 627-842 1-233 (339)
85 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.1E-41 1.3E-45 381.2 26.3 223 627-852 2-237 (275)
86 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.4E-41 1.2E-45 367.6 23.9 201 626-841 3-228 (254)
87 PRK11176 lipid transporter ATP 100.0 2E-38 4.4E-43 399.9 49.8 360 962-1326 71-437 (582)
88 PLN03140 ABC transporter G fam 100.0 5.7E-39 1.2E-43 431.1 45.7 197 643-839 178-426 (1470)
89 COG1120 FepC ABC-type cobalami 100.0 5E-41 1.1E-45 369.9 21.2 201 627-841 2-229 (258)
90 TIGR01846 type_I_sec_HlyB type 100.0 4E-38 8.7E-43 404.1 50.6 364 958-1326 181-551 (694)
91 TIGR02204 MsbA_rel ABC transpo 100.0 6.8E-38 1.5E-42 394.7 50.1 366 958-1325 60-433 (576)
92 COG4172 ABC-type uncharacteriz 100.0 6.2E-40 1.3E-44 366.5 27.8 208 625-840 4-247 (534)
93 COG0488 Uup ATPase components 100.0 1.2E-39 2.6E-44 395.8 31.3 206 627-841 3-241 (530)
94 COG3839 MalK ABC-type sugar tr 100.0 2E-40 4.3E-45 378.3 21.1 202 627-842 3-225 (338)
95 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.2E-39 7E-44 368.4 30.1 218 624-846 36-253 (282)
96 PLN03073 ABC transporter F fam 100.0 3.4E-39 7.3E-44 408.6 33.3 204 626-839 176-430 (718)
97 COG1117 PstB ABC-type phosphat 100.0 1.1E-40 2.4E-45 346.8 15.8 207 625-842 5-239 (253)
98 COG1127 Ttg2A ABC-type transpo 100.0 4.1E-40 8.9E-45 349.7 20.4 205 625-844 6-239 (263)
99 COG1118 CysA ABC-type sulfate/ 100.0 1.6E-40 3.4E-45 363.0 17.8 202 627-842 2-229 (345)
100 COG3842 PotA ABC-type spermidi 100.0 2E-40 4.4E-45 380.2 19.4 203 626-842 4-228 (352)
101 COG1136 SalX ABC-type antimicr 100.0 9.6E-40 2.1E-44 353.1 22.3 194 628-831 2-222 (226)
102 cd03252 ABCC_Hemolysin The ABC 100.0 3.1E-39 6.7E-44 361.5 26.1 219 628-848 1-233 (237)
103 cd03250 ABCC_MRP_domain1 Domai 100.0 2.2E-39 4.8E-44 354.4 24.1 201 628-828 1-204 (204)
104 PRK13657 cyclic beta-1,2-gluca 100.0 1.1E-36 2.3E-41 384.3 50.8 397 925-1325 23-428 (588)
105 PRK10789 putative multidrug tr 100.0 6.1E-37 1.3E-41 384.4 46.3 363 958-1325 38-408 (569)
106 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 7.6E-39 1.7E-43 358.6 25.4 217 628-845 1-231 (238)
107 COG3638 ABC-type phosphate/pho 100.0 1.2E-39 2.7E-44 345.2 17.6 201 626-839 2-236 (258)
108 TIGR01192 chvA glucan exporter 100.0 2E-36 4.2E-41 380.6 49.9 353 969-1326 69-429 (585)
109 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.6E-36 3.4E-41 379.4 48.7 362 961-1325 58-435 (555)
110 COG1122 CbiO ABC-type cobalt t 100.0 4.5E-39 9.8E-44 354.7 21.1 202 627-841 3-229 (235)
111 cd03253 ABCC_ATM1_transporter 100.0 2.2E-38 4.7E-43 354.4 26.3 216 628-846 1-230 (236)
112 cd03251 ABCC_MsbA MsbA is an e 100.0 2.6E-38 5.7E-43 353.3 25.5 214 628-843 1-228 (234)
113 COG1124 DppF ABC-type dipeptid 100.0 1.3E-38 2.7E-43 340.5 21.4 206 626-841 2-232 (252)
114 cd03288 ABCC_SUR2 The SUR doma 100.0 4.3E-38 9.4E-43 356.4 27.2 223 625-849 17-253 (257)
115 cd03254 ABCC_Glucan_exporter_l 100.0 2.4E-38 5.2E-43 352.5 24.6 211 627-840 2-226 (229)
116 PRK11650 ugpC glycerol-3-phosp 100.0 2.8E-38 6E-43 371.9 24.0 203 627-842 3-226 (356)
117 cd03244 ABCC_MRP_domain2 Domai 100.0 6E-38 1.3E-42 347.4 25.0 206 627-834 2-220 (221)
118 TIGR02314 ABC_MetN D-methionin 100.0 2.1E-38 4.5E-43 370.0 22.2 204 627-841 1-231 (343)
119 PRK13631 cbiO cobalt transport 100.0 4.8E-38 1E-42 365.3 25.1 209 624-842 18-267 (320)
120 COG2884 FtsE Predicted ATPase 100.0 2E-38 4.3E-43 324.6 17.5 194 627-833 1-219 (223)
121 TIGR01186 proV glycine betaine 100.0 2.6E-38 5.6E-43 371.2 20.8 188 643-841 6-220 (363)
122 COG3840 ThiQ ABC-type thiamine 100.0 2.7E-38 5.8E-43 320.6 17.8 199 628-842 2-221 (231)
123 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-37 2.6E-42 344.7 24.7 205 627-833 2-220 (220)
124 cd03261 ABC_Org_Solvent_Resist 100.0 5.6E-38 1.2E-42 350.9 21.7 200 628-841 1-227 (235)
125 PRK11432 fbpC ferric transport 100.0 7.8E-38 1.7E-42 367.0 23.3 203 626-842 5-228 (351)
126 PRK13409 putative ATPase RIL; 100.0 1.7E-37 3.6E-42 386.9 27.1 178 633-827 79-287 (590)
127 PRK13643 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 358.0 23.6 205 627-841 1-234 (288)
128 PRK13650 cbiO cobalt transport 100.0 1.6E-37 3.6E-42 355.5 24.4 204 627-841 4-230 (279)
129 PRK13637 cbiO cobalt transport 100.0 1.3E-37 2.7E-42 357.8 23.3 206 627-841 2-235 (287)
130 TIGR03265 PhnT2 putative 2-ami 100.0 9.9E-38 2.1E-42 366.8 22.4 202 627-842 4-226 (353)
131 PRK13634 cbiO cobalt transport 100.0 1.6E-37 3.5E-42 357.4 23.5 204 628-841 3-236 (290)
132 PRK09452 potA putrescine/sperm 100.0 2.4E-37 5.3E-42 365.2 23.7 205 624-842 11-236 (375)
133 PRK13651 cobalt transporter AT 100.0 3.3E-37 7.2E-42 356.2 24.1 205 627-841 2-255 (305)
134 PRK13537 nodulation ABC transp 100.0 2.3E-37 4.9E-42 358.2 22.7 203 625-841 5-228 (306)
135 PRK10522 multidrug transporter 100.0 8.4E-35 1.8E-39 363.7 47.4 352 962-1325 54-416 (547)
136 cd03296 ABC_CysA_sulfate_impor 100.0 3.3E-37 7.1E-42 345.6 23.1 200 627-840 2-226 (239)
137 PRK10851 sulfate/thiosulfate t 100.0 3.3E-37 7.1E-42 362.4 23.4 202 627-842 2-228 (353)
138 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-37 4.9E-42 364.2 22.0 202 627-842 5-230 (362)
139 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-37 5E-42 346.2 21.0 206 628-840 1-232 (236)
140 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-37 5.8E-42 343.6 21.0 195 628-837 1-226 (227)
141 cd03290 ABCC_SUR1_N The SUR do 100.0 6.2E-37 1.3E-41 338.6 23.6 198 629-828 2-218 (218)
142 PRK13647 cbiO cobalt transport 100.0 4.7E-37 1E-41 350.9 22.7 199 627-838 4-225 (274)
143 PRK13646 cbiO cobalt transport 100.0 5.5E-37 1.2E-41 352.5 23.3 205 627-841 2-236 (286)
144 PRK11000 maltose/maltodextrin 100.0 4.2E-37 9.2E-42 364.2 23.0 201 627-841 3-224 (369)
145 PRK13635 cbiO cobalt transport 100.0 1.1E-36 2.3E-41 348.7 25.0 204 626-841 4-230 (279)
146 cd03259 ABC_Carb_Solutes_like 100.0 3.8E-37 8.2E-42 339.1 20.3 192 628-833 1-213 (213)
147 PRK11153 metN DL-methionine tr 100.0 5.3E-37 1.2E-41 360.4 22.8 204 627-841 1-231 (343)
148 cd03265 ABC_DrrA DrrA is the A 100.0 4.1E-37 8.9E-42 340.5 20.4 197 628-838 1-219 (220)
149 PRK13644 cbiO cobalt transport 100.0 9.6E-37 2.1E-41 348.3 23.9 202 627-841 1-225 (274)
150 TIGR02315 ABC_phnC phosphonate 100.0 7.5E-37 1.6E-41 343.5 22.6 198 628-838 2-233 (243)
151 PRK11629 lolD lipoprotein tran 100.0 7.4E-37 1.6E-41 341.4 22.3 198 626-834 4-228 (233)
152 cd03293 ABC_NrtD_SsuB_transpor 100.0 5.5E-37 1.2E-41 339.5 20.9 197 628-835 1-218 (220)
153 cd03226 ABC_cobalt_CbiO_domain 100.0 5.3E-37 1.1E-41 335.9 20.6 189 629-830 1-205 (205)
154 TIGR01842 type_I_sec_PrtD type 100.0 3.2E-34 7E-39 358.4 48.4 357 958-1326 48-412 (544)
155 TIGR00960 3a0501s02 Type II (G 100.0 4.2E-37 9.1E-42 339.4 19.8 191 627-829 1-216 (216)
156 PRK14250 phosphate ABC transpo 100.0 1.3E-36 2.7E-41 341.3 23.9 202 627-841 3-222 (241)
157 cd03256 ABC_PhnC_transporter A 100.0 7.5E-37 1.6E-41 343.1 21.9 199 628-839 1-233 (241)
158 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.2E-37 1.1E-41 339.2 20.3 191 628-829 1-218 (218)
159 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1E-36 2.3E-41 340.9 22.9 201 627-841 1-222 (236)
160 COG1129 MglA ABC-type sugar tr 100.0 7.4E-36 1.6E-40 353.3 31.0 202 625-834 6-228 (500)
161 cd03248 ABCC_TAP TAP, the Tran 100.0 1.2E-36 2.6E-41 338.2 22.8 205 624-829 8-226 (226)
162 PRK13641 cbiO cobalt transport 100.0 1.2E-36 2.7E-41 349.7 23.7 205 627-841 2-235 (287)
163 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.1E-36 4.5E-41 331.7 24.3 190 625-834 4-206 (207)
164 TIGR01288 nodI ATP-binding ABC 100.0 1E-36 2.2E-41 353.0 23.0 201 626-840 3-224 (303)
165 cd03268 ABC_BcrA_bacitracin_re 100.0 1E-36 2.2E-41 334.4 21.7 192 628-833 1-208 (208)
166 PRK11607 potG putrescine trans 100.0 1E-36 2.2E-41 360.5 23.1 204 625-842 17-241 (377)
167 PRK14242 phosphate transporter 100.0 1E-36 2.3E-41 344.5 22.1 205 626-841 5-238 (253)
168 PRK13536 nodulation factor exp 100.0 1E-36 2.2E-41 356.6 22.3 203 625-841 39-262 (340)
169 cd03224 ABC_TM1139_LivF_branch 100.0 1.1E-36 2.5E-41 337.3 21.6 199 628-839 1-220 (222)
170 PRK15079 oligopeptide ABC tran 100.0 1.2E-36 2.6E-41 354.9 22.8 208 624-841 5-252 (331)
171 cd03258 ABC_MetN_methionine_tr 100.0 1.2E-36 2.5E-41 339.9 21.7 202 628-840 2-230 (233)
172 PRK13636 cbiO cobalt transport 100.0 1.9E-36 4.2E-41 347.4 24.0 203 626-841 4-232 (283)
173 TIGR00972 3a0107s01c2 phosphat 100.0 1.2E-36 2.7E-41 342.6 22.1 203 627-840 1-232 (247)
174 PRK09536 btuD corrinoid ABC tr 100.0 1.2E-36 2.5E-41 361.3 22.9 201 627-841 3-229 (402)
175 COG1131 CcmA ABC-type multidru 100.0 1.4E-36 2.9E-41 348.7 22.2 201 627-840 4-226 (293)
176 PRK11247 ssuB aliphatic sulfon 100.0 2.3E-36 5E-41 341.4 23.7 197 626-836 11-219 (257)
177 COG0410 LivF ABC-type branched 100.0 1.5E-36 3.3E-41 322.6 20.7 209 626-842 2-228 (237)
178 PRK13640 cbiO cobalt transport 100.0 2.8E-36 6E-41 346.0 24.4 205 625-841 3-233 (282)
179 cd03218 ABC_YhbG The ABC trans 100.0 1.5E-36 3.2E-41 338.8 21.5 199 628-840 1-222 (232)
180 cd03263 ABC_subfamily_A The AB 100.0 1.7E-36 3.6E-41 335.6 21.7 198 628-838 1-219 (220)
181 PRK14269 phosphate ABC transpo 100.0 1.8E-36 3.9E-41 341.1 22.2 204 627-841 2-231 (246)
182 cd03235 ABC_Metallic_Cations A 100.0 1.2E-36 2.7E-41 335.0 20.4 190 629-833 1-213 (213)
183 PRK13632 cbiO cobalt transport 100.0 3E-36 6.5E-41 343.9 24.2 204 626-841 6-232 (271)
184 PRK13642 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 344.5 24.6 205 627-842 4-231 (277)
185 cd03266 ABC_NatA_sodium_export 100.0 1.6E-36 3.5E-41 335.2 21.1 195 628-833 2-218 (218)
186 PRK13633 cobalt transporter AT 100.0 3.9E-36 8.3E-41 344.5 24.9 205 626-841 3-234 (280)
187 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-36 3.1E-41 334.4 20.3 192 628-833 1-213 (213)
188 COG4615 PvdE ABC-type sideroph 100.0 1.5E-33 3.2E-38 314.2 44.1 503 301-833 4-530 (546)
189 PRK13649 cbiO cobalt transport 100.0 2.6E-36 5.5E-41 346.3 22.9 204 628-841 3-235 (280)
190 TIGR02211 LolD_lipo_ex lipopro 100.0 2.5E-36 5.3E-41 334.5 21.8 192 628-830 2-220 (221)
191 PRK14273 phosphate ABC transpo 100.0 2.7E-36 5.9E-41 341.2 22.6 205 626-841 6-239 (254)
192 PRK09493 glnQ glutamine ABC tr 100.0 3.1E-36 6.7E-41 337.9 22.7 200 628-841 2-226 (240)
193 COG4555 NatA ABC-type Na+ tran 100.0 5.7E-37 1.2E-41 316.1 15.2 202 627-841 1-223 (245)
194 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-36 3.1E-41 346.1 20.0 199 629-841 26-251 (269)
195 PRK13645 cbiO cobalt transport 100.0 3.5E-36 7.5E-41 346.6 23.0 206 626-841 5-241 (289)
196 PRK10619 histidine/lysine/argi 100.0 3.1E-36 6.7E-41 341.4 21.9 203 625-840 3-241 (257)
197 PRK11831 putative ABC transpor 100.0 3E-36 6.6E-41 343.5 21.9 202 626-841 6-234 (269)
198 PRK10744 pstB phosphate transp 100.0 4.2E-36 9.1E-41 340.8 22.9 206 625-841 11-245 (260)
199 PRK11300 livG leucine/isoleuci 100.0 5.3E-36 1.1E-40 339.1 23.4 207 626-840 4-243 (255)
200 COG4175 ProV ABC-type proline/ 100.0 1.8E-36 4E-41 330.8 18.8 206 626-842 3-256 (386)
201 COG3845 ABC-type uncharacteriz 100.0 2.5E-35 5.5E-40 340.9 29.3 192 626-831 3-220 (501)
202 cd03269 ABC_putative_ATPase Th 100.0 2.7E-36 5.9E-41 331.5 20.4 192 628-833 1-210 (210)
203 PRK10584 putative ABC transpor 100.0 5.2E-36 1.1E-40 333.5 22.7 196 626-832 5-227 (228)
204 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.2E-36 6.9E-41 338.3 21.1 202 628-840 1-225 (242)
205 PRK13648 cbiO cobalt transport 100.0 6.6E-36 1.4E-40 340.8 23.8 204 626-841 6-232 (269)
206 PRK13638 cbiO cobalt transport 100.0 5.7E-36 1.2E-40 341.7 23.1 201 627-841 1-226 (271)
207 PRK11231 fecE iron-dicitrate t 100.0 5.7E-36 1.2E-40 338.8 22.9 200 627-840 2-227 (255)
208 TIGR03410 urea_trans_UrtE urea 100.0 5E-36 1.1E-40 334.1 21.9 198 628-838 1-219 (230)
209 PRK11264 putative amino-acid A 100.0 3.8E-36 8.2E-41 339.3 21.2 201 627-841 3-234 (250)
210 TIGR03415 ABC_choXWV_ATP choli 100.0 3.8E-36 8.3E-41 354.2 21.9 188 643-841 37-255 (382)
211 PRK10247 putative ABC transpor 100.0 4.3E-36 9.3E-41 333.5 21.1 199 625-836 5-223 (225)
212 cd03257 ABC_NikE_OppD_transpor 100.0 3.4E-36 7.3E-41 334.9 20.2 201 627-833 1-228 (228)
213 cd03247 ABCC_cytochrome_bd The 100.0 6.2E-36 1.3E-40 320.2 21.4 166 628-833 1-178 (178)
214 PRK10070 glycine betaine trans 100.0 3.8E-36 8.3E-41 356.7 21.8 204 627-841 4-255 (400)
215 PRK14274 phosphate ABC transpo 100.0 7.3E-36 1.6E-40 338.7 23.1 206 625-841 10-244 (259)
216 PRK13548 hmuV hemin importer A 100.0 1.1E-35 2.4E-40 336.8 24.5 200 627-840 2-230 (258)
217 TIGR02769 nickel_nikE nickel i 100.0 7.6E-36 1.7E-40 339.6 23.2 207 627-843 2-243 (265)
218 PRK11614 livF leucine/isoleuci 100.0 1.1E-35 2.5E-40 332.7 24.0 205 626-840 4-226 (237)
219 PRK14235 phosphate transporter 100.0 7.5E-36 1.6E-40 339.9 22.9 206 624-840 16-251 (267)
220 PRK13639 cbiO cobalt transport 100.0 7.3E-36 1.6E-40 341.4 22.8 202 627-841 1-227 (275)
221 TIGR03411 urea_trans_UrtD urea 100.0 7.4E-36 1.6E-40 335.3 22.3 199 627-840 2-231 (242)
222 PRK14245 phosphate ABC transpo 100.0 5.3E-36 1.1E-40 338.1 21.2 205 626-841 2-235 (250)
223 PRK11308 dppF dipeptide transp 100.0 8E-36 1.7E-40 347.7 23.2 206 626-841 4-245 (327)
224 PRK10895 lipopolysaccharide AB 100.0 9.1E-36 2E-40 334.4 22.8 200 627-840 3-226 (241)
225 PRK14259 phosphate ABC transpo 100.0 9.4E-36 2E-40 339.4 23.1 206 625-841 11-254 (269)
226 PRK11124 artP arginine transpo 100.0 1E-35 2.2E-40 334.2 23.0 200 627-840 2-230 (242)
227 PRK14248 phosphate ABC transpo 100.0 8.9E-36 1.9E-40 339.6 22.9 207 624-841 18-253 (268)
228 cd03225 ABC_cobalt_CbiO_domain 100.0 4.5E-36 9.8E-41 330.0 19.7 188 629-828 1-211 (211)
229 PRK14239 phosphate transporter 100.0 8.1E-36 1.8E-40 337.0 22.2 205 626-841 4-237 (252)
230 PRK10253 iron-enterobactin tra 100.0 9.3E-36 2E-40 338.9 22.8 203 624-840 4-233 (265)
231 cd03264 ABC_drug_resistance_li 100.0 5E-36 1.1E-40 329.6 19.9 190 628-833 1-211 (211)
232 PRK10575 iron-hydroxamate tran 100.0 9.6E-36 2.1E-40 338.8 22.8 203 624-840 8-237 (265)
233 PRK13652 cbiO cobalt transport 100.0 1.4E-35 3.1E-40 339.3 24.2 202 627-841 3-228 (277)
234 cd03298 ABC_ThiQ_thiamine_tran 100.0 9E-36 1.9E-40 327.7 21.7 190 628-833 1-211 (211)
235 TIGR02673 FtsE cell division A 100.0 4.5E-36 9.8E-41 330.7 19.2 189 627-828 1-214 (214)
236 cd03292 ABC_FtsE_transporter F 100.0 6E-36 1.3E-40 329.7 20.2 189 628-829 1-214 (214)
237 PRK14237 phosphate transporter 100.0 1.2E-35 2.6E-40 338.2 23.1 207 624-841 17-252 (267)
238 PRK09984 phosphonate/organopho 100.0 1.6E-35 3.5E-40 336.5 24.1 198 627-838 4-240 (262)
239 PRK14249 phosphate ABC transpo 100.0 1.4E-35 2.9E-40 335.0 23.0 205 626-841 3-236 (251)
240 PRK14268 phosphate ABC transpo 100.0 9.7E-36 2.1E-40 337.4 21.7 206 625-841 10-243 (258)
241 TIGR01188 drrA daunorubicin re 100.0 6.2E-36 1.3E-40 346.4 20.2 187 643-840 6-213 (302)
242 PRK14270 phosphate ABC transpo 100.0 1.5E-35 3.1E-40 334.8 22.7 205 626-841 3-236 (251)
243 PRK14251 phosphate ABC transpo 100.0 9.1E-36 2E-40 336.4 21.0 204 627-841 4-236 (251)
244 PRK10771 thiQ thiamine transpo 100.0 3.6E-35 7.9E-40 327.6 25.6 198 628-841 2-220 (232)
245 TIGR03873 F420-0_ABC_ATP propo 100.0 1.3E-35 2.9E-40 336.0 22.3 199 628-840 2-226 (256)
246 TIGR03005 ectoine_ehuA ectoine 100.0 1.2E-35 2.7E-40 335.5 22.0 200 628-841 1-237 (252)
247 PRK14247 phosphate ABC transpo 100.0 1.5E-35 3.3E-40 334.4 22.6 204 627-841 3-235 (250)
248 PRK14240 phosphate transporter 100.0 1.7E-35 3.7E-40 334.0 23.0 203 627-840 3-234 (250)
249 PRK15112 antimicrobial peptide 100.0 2E-35 4.4E-40 336.4 23.4 206 626-841 3-240 (267)
250 PRK11248 tauB taurine transpor 100.0 1.6E-35 3.5E-40 334.7 22.4 195 627-835 1-215 (255)
251 TIGR03740 galliderm_ABC gallid 100.0 1.6E-35 3.4E-40 328.6 21.7 196 628-837 1-210 (223)
252 TIGR01978 sufC FeS assembly AT 100.0 1.2E-35 2.7E-40 333.6 21.2 199 628-839 1-233 (243)
253 TIGR03522 GldA_ABC_ATP gliding 100.0 1.2E-35 2.6E-40 343.7 21.6 199 627-840 2-221 (301)
254 PRK11022 dppD dipeptide transp 100.0 1.3E-35 2.8E-40 346.1 22.0 207 627-841 3-244 (326)
255 cd03223 ABCD_peroxisomal_ALDP 100.0 1.6E-35 3.5E-40 313.2 20.6 162 628-828 1-164 (166)
256 PRK10908 cell division protein 100.0 2.1E-35 4.5E-40 327.3 22.4 191 628-831 2-217 (222)
257 PRK11144 modC molybdate transp 100.0 1.8E-35 3.8E-40 348.8 23.1 198 628-842 2-220 (352)
258 cd03246 ABCC_Protease_Secretio 100.0 1.3E-35 2.9E-40 316.1 19.7 160 628-829 1-173 (173)
259 PRK14267 phosphate ABC transpo 100.0 1.9E-35 4.1E-40 334.2 22.0 204 627-841 4-238 (253)
260 PRK14238 phosphate transporter 100.0 2.4E-35 5.2E-40 336.4 22.6 206 625-841 22-256 (271)
261 PRK14243 phosphate transporter 100.0 3.2E-35 7E-40 334.2 23.2 205 626-841 9-249 (264)
262 COG4987 CydC ABC-type transpor 100.0 9.6E-33 2.1E-37 321.3 44.0 356 964-1325 66-431 (573)
263 PRK14253 phosphate ABC transpo 100.0 2.7E-35 5.9E-40 332.2 22.2 203 627-840 3-233 (249)
264 cd03262 ABC_HisP_GlnQ_permease 100.0 1.4E-35 3E-40 326.6 19.3 188 628-829 1-213 (213)
265 PRK09473 oppD oligopeptide tra 100.0 1.8E-35 3.8E-40 345.3 21.1 209 625-841 10-252 (330)
266 PRK14236 phosphate transporter 100.0 3.7E-35 8E-40 335.1 23.2 206 624-840 22-256 (272)
267 PRK15093 antimicrobial peptide 100.0 2.4E-35 5.2E-40 344.9 22.0 207 627-841 3-249 (330)
268 COG4178 ABC-type uncharacteriz 100.0 1.1E-31 2.3E-36 323.5 53.7 444 371-825 106-587 (604)
269 PRK14261 phosphate ABC transpo 100.0 3.8E-35 8.2E-40 331.8 22.6 204 626-840 5-237 (253)
270 PRK09544 znuC high-affinity zi 100.0 5.1E-35 1.1E-39 329.7 23.4 199 627-840 4-209 (251)
271 PRK11701 phnK phosphonate C-P 100.0 3.7E-35 8.1E-40 332.7 22.5 210 626-841 5-242 (258)
272 PRK14262 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 332.2 21.3 204 627-841 3-235 (250)
273 PRK14254 phosphate ABC transpo 100.0 4.5E-35 9.7E-40 336.1 22.8 205 625-840 37-269 (285)
274 PRK14256 phosphate ABC transpo 100.0 5.6E-35 1.2E-39 330.2 22.9 206 625-841 2-237 (252)
275 PRK14244 phosphate ABC transpo 100.0 3E-35 6.5E-40 332.2 20.5 203 628-841 6-238 (251)
276 TIGR01277 thiQ thiamine ABC tr 100.0 6E-35 1.3E-39 321.6 21.8 191 628-834 1-212 (213)
277 TIGR00968 3a0106s01 sulfate AB 100.0 6.4E-35 1.4E-39 326.6 22.3 199 628-840 1-220 (237)
278 PRK14252 phosphate ABC transpo 100.0 7E-35 1.5E-39 331.7 23.0 205 625-840 14-249 (265)
279 PRK14271 phosphate ABC transpo 100.0 5.5E-35 1.2E-39 334.0 21.9 205 626-841 20-252 (276)
280 COG1137 YhbG ABC-type (unclass 100.0 2.8E-36 6.2E-41 310.6 10.1 208 627-842 4-230 (243)
281 PRK15056 manganese/iron transp 100.0 7.3E-35 1.6E-39 332.7 22.8 201 626-840 5-230 (272)
282 PRK10418 nikD nickel transport 100.0 1.1E-34 2.4E-39 328.1 23.9 203 627-841 4-231 (254)
283 PRK14264 phosphate ABC transpo 100.0 7.2E-35 1.6E-39 337.6 22.9 206 625-841 43-290 (305)
284 cd03299 ABC_ModC_like Archeal 100.0 6.4E-35 1.4E-39 326.2 21.6 199 628-841 1-220 (235)
285 PRK13546 teichoic acids export 100.0 9.5E-35 2.1E-39 329.3 23.3 212 626-848 3-240 (264)
286 cd03300 ABC_PotA_N PotA is an 100.0 5.6E-35 1.2E-39 326.1 20.3 200 628-841 1-221 (232)
287 PRK13547 hmuV hemin importer A 100.0 1E-34 2.2E-39 330.6 22.8 199 628-840 2-244 (272)
288 PRK14265 phosphate ABC transpo 100.0 1.2E-34 2.6E-39 331.1 23.3 207 624-841 17-259 (274)
289 PRK14275 phosphate ABC transpo 100.0 7.8E-35 1.7E-39 334.5 21.7 206 625-841 37-271 (286)
290 PRK14255 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 327.8 22.0 205 626-841 4-237 (252)
291 PRK14260 phosphate ABC transpo 100.0 1.1E-34 2.4E-39 328.9 22.0 204 626-840 6-243 (259)
292 PRK14263 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 328.0 22.7 205 626-841 7-246 (261)
293 PRK14266 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 327.5 21.3 204 627-841 3-235 (250)
294 PRK10419 nikE nickel transport 100.0 1.4E-34 3E-39 329.7 22.2 207 627-843 3-244 (268)
295 TIGR02982 heterocyst_DevA ABC 100.0 1.4E-34 3E-39 320.4 21.2 191 628-829 2-219 (220)
296 cd03234 ABCG_White The White s 100.0 7.9E-35 1.7E-39 323.6 19.1 201 627-833 3-226 (226)
297 TIGR02142 modC_ABC molybdenum 100.0 1.4E-34 3.1E-39 341.6 22.2 195 632-842 4-223 (354)
298 PRK14272 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 326.8 21.2 204 627-841 4-237 (252)
299 cd03230 ABC_DR_subfamily_A Thi 100.0 1.4E-34 2.9E-39 308.4 19.7 159 628-829 1-173 (173)
300 PRK14258 phosphate ABC transpo 100.0 1.7E-34 3.8E-39 327.7 21.8 206 626-841 6-246 (261)
301 cd03297 ABC_ModC_molybdenum_tr 100.0 1.4E-34 2.9E-39 319.0 20.2 185 632-833 5-214 (214)
302 TIGR02323 CP_lyasePhnK phospho 100.0 2.3E-34 4.9E-39 325.4 22.2 205 627-841 3-239 (253)
303 PRK14241 phosphate transporter 100.0 1.7E-34 3.8E-39 327.3 21.0 204 627-841 4-243 (258)
304 cd03213 ABCG_EPDR ABCG transpo 100.0 2E-34 4.3E-39 312.8 20.4 174 627-833 3-194 (194)
305 PRK13545 tagH teichoic acids e 100.0 4.9E-34 1.1E-38 341.1 25.3 211 625-846 19-238 (549)
306 COG1123 ATPase components of v 100.0 2.3E-34 5E-39 342.6 22.3 207 625-841 278-520 (539)
307 COG4181 Predicted ABC-type tra 100.0 9.2E-35 2E-39 291.8 15.9 195 626-831 5-226 (228)
308 COG4559 ABC-type hemin transpo 100.0 1.4E-34 3.1E-39 300.6 17.6 205 627-841 1-231 (259)
309 cd03232 ABC_PDR_domain2 The pl 100.0 2.4E-34 5.2E-39 311.6 20.0 174 627-833 3-192 (192)
310 COG4598 HisP ABC-type histidin 100.0 3.8E-35 8.2E-40 296.2 12.6 203 626-842 5-243 (256)
311 COG0444 DppD ABC-type dipeptid 100.0 1.5E-34 3.3E-39 322.5 18.4 218 628-853 2-258 (316)
312 COG4525 TauB ABC-type taurine 100.0 1.1E-34 2.4E-39 297.0 15.8 197 628-836 4-220 (259)
313 cd03233 ABC_PDR_domain1 The pl 100.0 4.2E-34 9.1E-39 312.2 21.0 180 627-833 3-202 (202)
314 KOG0056 Heavy metal exporter H 100.0 1.4E-33 3E-38 319.6 25.5 365 956-1325 253-631 (790)
315 cd03215 ABC_Carb_Monos_II This 100.0 2.5E-34 5.3E-39 308.9 18.3 160 627-829 4-182 (182)
316 PRK14246 phosphate ABC transpo 100.0 7.8E-34 1.7E-38 321.4 23.1 206 625-841 8-242 (257)
317 TIGR03608 L_ocin_972_ABC putat 100.0 2.7E-34 5.8E-39 314.7 18.3 181 630-824 1-206 (206)
318 cd03229 ABC_Class3 This class 100.0 4.1E-34 8.9E-39 306.1 19.3 160 628-828 1-178 (178)
319 PRK10261 glutathione transport 100.0 6.4E-34 1.4E-38 359.5 24.4 206 626-841 312-554 (623)
320 cd03228 ABCC_MRP_Like The MRP 100.0 4.8E-34 1E-38 303.6 19.5 158 628-828 1-171 (171)
321 COG0411 LivG ABC-type branched 100.0 1.6E-34 3.4E-39 309.5 15.7 209 627-843 4-242 (250)
322 CHL00131 ycf16 sulfate ABC tra 100.0 1E-33 2.3E-38 319.9 23.0 199 626-837 6-238 (252)
323 TIGR00955 3a01204 The Eye Pigm 100.0 5.1E-33 1.1E-37 350.9 31.8 198 641-839 36-255 (617)
324 TIGR01184 ntrCD nitrate transp 100.0 5.3E-34 1.1E-38 317.8 19.6 182 646-838 1-202 (230)
325 TIGR02770 nickel_nikD nickel i 100.0 5.7E-34 1.2E-38 317.6 19.5 189 645-841 1-216 (230)
326 PRK13538 cytochrome c biogenes 100.0 1.1E-33 2.4E-38 309.5 21.1 184 627-824 1-202 (204)
327 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 6.6E-34 1.4E-38 315.6 19.2 192 628-833 23-224 (224)
328 PRK03695 vitamin B12-transport 100.0 1.4E-33 3E-38 317.9 21.4 193 629-840 2-222 (248)
329 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.4E-33 3.1E-38 307.6 20.5 172 628-838 1-191 (200)
330 COG4988 CydD ABC-type transpor 100.0 9E-31 1.9E-35 310.4 45.5 365 956-1326 40-415 (559)
331 PRK09580 sufC cysteine desulfu 100.0 3.3E-33 7.2E-38 315.0 22.7 199 627-838 1-233 (248)
332 cd03267 ABC_NatA_like Similar 100.0 1.3E-33 2.9E-38 315.8 19.3 180 643-833 34-236 (236)
333 PRK13540 cytochrome c biogenes 100.0 2.8E-33 6.1E-38 305.3 21.0 182 628-823 2-198 (200)
334 PRK13543 cytochrome c biogenes 100.0 3.8E-33 8.2E-38 307.5 22.2 188 625-826 9-212 (214)
335 TIGR00954 3a01203 Peroxysomal 100.0 2.5E-31 5.4E-36 337.3 41.7 411 909-1326 81-535 (659)
336 cd03231 ABC_CcmA_heme_exporter 100.0 4.2E-33 9.1E-38 304.2 21.8 183 628-824 1-198 (201)
337 TIGR01257 rim_protein retinal- 100.0 6.9E-32 1.5E-36 363.3 37.5 206 624-841 1934-2160(2272)
338 PRK15134 microcin C ABC transp 100.0 2E-33 4.3E-38 350.0 21.2 205 626-841 274-516 (529)
339 PRK13549 xylose transporter AT 100.0 1.1E-33 2.4E-38 350.4 18.4 207 626-838 258-492 (506)
340 COG4619 ABC-type uncharacteriz 100.0 6.4E-34 1.4E-38 285.0 12.6 179 642-830 15-213 (223)
341 TIGR03269 met_CoM_red_A2 methy 100.0 3.8E-33 8.3E-38 346.9 22.3 209 626-840 278-517 (520)
342 PRK13539 cytochrome c biogenes 100.0 8.4E-33 1.8E-37 303.2 22.1 185 627-826 2-200 (207)
343 COG4604 CeuD ABC-type enteroch 100.0 3.2E-34 7E-39 294.3 9.9 201 627-841 1-226 (252)
344 cd03216 ABC_Carb_Monos_I This 100.0 5.2E-33 1.1E-37 293.2 19.2 161 628-831 1-162 (163)
345 KOG0060 Long-chain acyl-CoA tr 100.0 3.7E-30 8E-35 300.3 44.6 458 364-826 135-641 (659)
346 cd03214 ABC_Iron-Siderophores_ 100.0 2.9E-33 6.3E-38 300.1 17.3 178 629-833 1-180 (180)
347 PRK13541 cytochrome c biogenes 100.0 1.3E-32 2.9E-37 298.8 20.6 180 628-822 2-193 (195)
348 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.1E-32 2.4E-37 309.5 20.4 192 635-839 1-206 (246)
349 TIGR02324 CP_lyasePhnL phospho 100.0 1E-32 2.2E-37 306.2 19.3 187 628-824 2-222 (224)
350 KOG0057 Mitochondrial Fe/S clu 100.0 1.6E-30 3.5E-35 302.9 37.9 358 956-1325 74-444 (591)
351 COG4161 ArtP ABC-type arginine 100.0 6.8E-33 1.5E-37 275.1 15.2 204 627-840 2-230 (242)
352 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-32 2.4E-37 305.7 18.7 179 651-841 1-202 (223)
353 TIGR01189 ccmA heme ABC export 100.0 2E-32 4.4E-37 298.1 20.4 180 628-822 1-196 (198)
354 PRK15064 ABC transporter ATP-b 100.0 2.2E-32 4.7E-37 340.7 23.2 200 626-841 318-526 (530)
355 COG4608 AppF ABC-type oligopep 100.0 1.1E-32 2.4E-37 301.7 17.4 191 626-842 3-201 (268)
356 PRK09700 D-allose transporter 100.0 9.2E-33 2E-37 342.7 18.8 199 626-835 264-493 (510)
357 COG4152 ABC-type uncharacteriz 100.0 4.5E-33 9.7E-38 294.8 13.4 205 627-841 2-220 (300)
358 TIGR02633 xylG D-xylose ABC tr 100.0 9.6E-33 2.1E-37 341.9 18.2 206 626-837 256-489 (500)
359 TIGR01166 cbiO cobalt transpor 100.0 2E-32 4.3E-37 296.2 18.2 161 643-814 5-189 (190)
360 COG4148 ModC ABC-type molybdat 100.0 1.1E-32 2.3E-37 296.6 15.0 184 648-842 16-220 (352)
361 PLN03211 ABC transporter G-25; 100.0 4.9E-32 1.1E-36 341.9 23.4 191 643-840 81-296 (659)
362 PRK11288 araG L-arabinose tran 100.0 4E-32 8.8E-37 336.1 19.7 201 626-839 256-484 (501)
363 PRK10762 D-ribose transporter 100.0 4.9E-32 1.1E-36 335.3 19.4 199 626-838 256-482 (501)
364 COG4172 ABC-type uncharacteriz 100.0 1.7E-31 3.7E-36 299.1 19.7 207 625-842 274-518 (534)
365 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.4E-31 3.1E-36 276.3 17.8 141 628-828 1-144 (144)
366 PRK11819 putative ABC transpor 100.0 3.3E-31 7.1E-36 331.4 24.4 201 625-841 322-534 (556)
367 PRK15177 Vi polysaccharide exp 100.0 8.8E-32 1.9E-36 296.2 16.9 184 645-840 2-192 (213)
368 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 3.3E-31 7.2E-36 331.3 24.1 200 625-840 320-531 (552)
369 PRK15439 autoinducer 2 ABC tra 100.0 1E-31 2.2E-36 332.9 17.9 200 626-839 267-491 (510)
370 PRK13409 putative ATPase RIL; 100.0 4.4E-31 9.6E-36 329.4 21.7 195 625-835 338-537 (590)
371 PRK10636 putative ABC transpor 100.0 4.8E-31 1E-35 333.7 22.1 199 625-839 310-516 (638)
372 TIGR01187 potA spermidine/putr 100.0 2.1E-31 4.7E-36 311.0 17.3 171 661-842 1-192 (325)
373 PRK10535 macrolide transporter 100.0 6.5E-31 1.4E-35 333.3 22.7 202 627-839 4-231 (648)
374 PRK10938 putative molybdenum t 100.0 2.7E-31 5.9E-36 328.1 18.8 195 625-832 258-484 (490)
375 PLN03073 ABC transporter F fam 100.0 1.3E-30 2.7E-35 330.7 23.6 197 626-838 507-712 (718)
376 PRK10982 galactose/methyl gala 100.0 4E-31 8.7E-36 326.6 18.3 201 626-837 249-477 (491)
377 PRK11147 ABC transporter ATPas 100.0 1.3E-30 2.7E-35 330.5 22.9 199 625-839 317-527 (635)
378 cd03222 ABC_RNaseL_inhibitor T 100.0 6.3E-31 1.4E-35 279.5 16.5 152 631-837 4-160 (177)
379 TIGR00956 3a01205 Pleiotropic 100.0 1E-30 2.2E-35 353.3 22.6 204 627-837 759-990 (1394)
380 COG1119 ModF ABC-type molybden 100.0 4.7E-31 1E-35 282.6 13.9 200 624-834 28-256 (257)
381 cd03238 ABC_UvrA The excision 100.0 2.7E-30 5.8E-35 274.4 17.7 150 642-829 7-166 (176)
382 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.6E-30 3.5E-35 293.1 16.4 187 632-833 5-220 (255)
383 COG1134 TagH ABC-type polysacc 100.0 4.4E-30 9.6E-35 275.8 18.5 188 643-841 40-237 (249)
384 COG4167 SapF ABC-type antimicr 100.0 5.4E-30 1.2E-34 259.5 15.4 216 627-852 4-253 (267)
385 COG1101 PhnK ABC-type uncharac 100.0 3.8E-30 8.3E-35 268.2 13.6 204 628-833 2-231 (263)
386 COG5265 ATM1 ABC-type transpor 100.0 1.5E-28 3.2E-33 277.9 26.5 342 977-1325 3-356 (497)
387 KOG0927 Predicted transporter 100.0 3.7E-29 8.1E-34 290.1 20.5 206 625-841 73-310 (614)
388 PLN03140 ABC transporter G fam 100.0 6.1E-29 1.3E-33 334.6 23.5 204 627-837 867-1107(1470)
389 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.1E-29 1.1E-33 261.2 17.7 142 630-828 2-157 (157)
390 COG4136 ABC-type uncharacteriz 100.0 5.2E-29 1.1E-33 245.1 15.8 184 627-824 2-207 (213)
391 COG4674 Uncharacterized ABC-ty 100.0 2.1E-28 4.5E-33 251.4 12.8 201 626-841 4-236 (249)
392 COG4586 ABC-type uncharacteriz 99.9 9.4E-28 2E-32 258.5 13.7 190 643-841 37-247 (325)
393 KOG0061 Transporter, ABC super 99.9 2.6E-27 5.6E-32 296.2 18.1 207 626-839 24-259 (613)
394 COG0488 Uup ATPase components 99.9 1.6E-26 3.4E-31 281.5 24.2 201 624-840 318-525 (530)
395 cd03270 ABC_UvrA_I The excisio 99.9 7.7E-27 1.7E-31 259.3 17.5 182 643-833 8-226 (226)
396 COG0396 sufC Cysteine desulfur 99.9 2.4E-26 5.1E-31 243.6 19.8 201 627-839 3-232 (251)
397 COG4107 PhnK ABC-type phosphon 99.9 5.1E-27 1.1E-31 236.1 13.8 205 626-841 5-242 (258)
398 COG4133 CcmA ABC-type transpor 99.9 4E-26 8.6E-31 234.7 14.8 176 628-817 3-195 (209)
399 cd03271 ABC_UvrA_II The excisi 99.9 6.9E-26 1.5E-30 254.5 16.2 182 644-835 9-261 (261)
400 COG4618 ArpD ABC-type protease 99.9 2.9E-23 6.2E-28 240.3 35.7 348 964-1330 71-434 (580)
401 PRK00635 excinuclease ABC subu 99.9 9.1E-25 2E-29 290.6 26.8 94 746-839 803-905 (1809)
402 PF00005 ABC_tran: ABC transpo 99.9 6.2E-26 1.3E-30 232.0 11.4 123 646-781 1-137 (137)
403 KOG0064 Peroxisomal long-chain 99.9 3E-21 6.5E-26 222.5 46.1 459 358-824 164-681 (728)
404 KOG0059 Lipid exporter ABCA1 a 99.9 2.4E-25 5.1E-30 290.1 13.8 207 626-841 563-788 (885)
405 KOG0065 Pleiotropic drug resis 99.9 5.2E-23 1.1E-27 260.7 31.8 191 643-840 128-351 (1391)
406 KOG0062 ATPase component of AB 99.9 3.4E-24 7.3E-29 248.0 19.1 192 625-839 78-284 (582)
407 cd03278 ABC_SMC_barmotin Barmo 99.9 1.2E-24 2.5E-29 236.5 13.6 154 647-826 14-190 (197)
408 COG4778 PhnL ABC-type phosphon 99.9 4.3E-25 9.3E-30 222.0 9.0 190 627-826 4-227 (235)
409 COG4615 PvdE ABC-type sideroph 99.9 5.6E-21 1.2E-25 214.2 34.8 349 957-1323 49-414 (546)
410 cd03240 ABC_Rad50 The catalyti 99.9 1E-22 2.2E-27 222.7 14.6 154 649-826 16-197 (204)
411 KOG0927 Predicted transporter 99.9 3.3E-23 7.2E-28 241.0 10.9 200 625-839 387-595 (614)
412 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.2E-22 2.7E-27 223.8 14.6 181 627-829 5-211 (213)
413 COG1129 MglA ABC-type sugar tr 99.9 3.5E-22 7.7E-27 237.4 17.9 199 626-837 262-487 (500)
414 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.2E-22 2.6E-27 228.5 13.1 177 643-825 15-234 (243)
415 PRK00349 uvrA excinuclease ABC 99.9 6.4E-22 1.4E-26 254.8 19.6 97 746-842 824-929 (943)
416 cd03273 ABC_SMC2_euk Eukaryoti 99.9 4.1E-22 9E-27 225.2 12.1 169 656-825 25-242 (251)
417 COG1245 Predicted ATPase, RNas 99.9 6.7E-21 1.5E-25 217.2 18.4 160 653-825 97-287 (591)
418 cd03275 ABC_SMC1_euk Eukaryoti 99.9 7E-22 1.5E-26 222.7 10.4 171 654-825 21-232 (247)
419 COG4138 BtuD ABC-type cobalami 99.9 2.7E-22 5.9E-27 202.6 5.4 197 628-841 4-222 (248)
420 KOG0065 Pleiotropic drug resis 99.9 7.7E-22 1.7E-26 250.2 9.9 204 627-837 787-1018(1391)
421 PRK14257 phosphate ABC transpo 99.8 2.2E-21 4.8E-26 226.6 12.4 127 1200-1326 35-183 (329)
422 TIGR00630 uvra excinuclease AB 99.8 6.3E-21 1.4E-25 245.2 17.6 93 746-838 822-923 (924)
423 PF00664 ABC_membrane: ABC tra 99.8 6.5E-18 1.4E-22 189.4 40.0 268 313-581 2-275 (275)
424 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.4E-21 3E-26 214.8 4.6 182 627-826 5-204 (212)
425 cd03276 ABC_SMC6_euk Eukaryoti 99.8 6.4E-20 1.4E-24 199.6 15.8 161 646-828 12-192 (198)
426 KOG0066 eIF2-interacting prote 99.8 4.7E-20 1E-24 207.4 14.2 198 626-838 585-789 (807)
427 KOG0066 eIF2-interacting prote 99.8 1E-19 2.2E-24 204.7 16.5 196 627-837 264-496 (807)
428 COG1245 Predicted ATPase, RNas 99.8 9.6E-20 2.1E-24 207.9 15.2 181 632-826 340-531 (591)
429 cd03239 ABC_SMC_head The struc 99.8 6.7E-20 1.4E-24 195.9 11.7 153 648-826 14-172 (178)
430 COG3845 ABC-type uncharacteriz 99.8 4.7E-19 1E-23 206.4 19.0 208 624-837 254-489 (501)
431 KOG2355 Predicted ABC-type tra 99.8 3.7E-19 8E-24 184.3 16.1 200 624-839 10-236 (291)
432 KOG0062 ATPase component of AB 99.8 9.5E-20 2.1E-24 211.4 12.5 192 624-831 359-559 (582)
433 PF00664 ABC_membrane: ABC tra 99.8 1.5E-16 3.2E-21 178.5 32.0 221 967-1187 52-274 (275)
434 PRK00349 uvrA excinuclease ABC 99.8 4.9E-18 1.1E-22 219.1 19.7 94 746-839 483-584 (943)
435 cd03289 ABCC_CFTR2 The CFTR su 99.8 1.4E-18 3E-23 198.3 9.8 91 1235-1326 1-97 (275)
436 cd03280 ABC_MutS2 MutS2 homolo 99.8 2E-18 4.2E-23 188.6 10.0 146 645-832 16-171 (200)
437 COG4170 SapD ABC-type antimicr 99.7 2.1E-18 4.6E-23 178.8 7.8 215 628-851 4-261 (330)
438 COG4178 ABC-type uncharacteriz 99.7 4.2E-15 9.1E-20 180.6 36.5 353 957-1325 87-475 (604)
439 cd03277 ABC_SMC5_euk Eukaryoti 99.7 3.1E-17 6.7E-22 180.5 14.1 175 646-828 14-211 (213)
440 COG0178 UvrA Excinuclease ATPa 99.7 1.1E-16 2.5E-21 194.2 20.2 98 745-842 815-921 (935)
441 COG2401 ABC-type ATPase fused 99.7 4.2E-17 9.1E-22 184.2 15.1 221 600-830 327-588 (593)
442 cd03369 ABCC_NFT1 Domain 2 of 99.7 2.3E-17 5E-22 181.1 10.6 96 1231-1326 1-102 (207)
443 cd03227 ABC_Class2 ABC-type Cl 99.7 1.5E-16 3.3E-21 167.8 12.8 135 649-826 14-155 (162)
444 PRK00635 excinuclease ABC subu 99.7 2.9E-16 6.4E-21 210.2 16.9 105 737-842 1685-1798(1809)
445 COG1126 GlnQ ABC-type polar am 99.7 2E-16 4.3E-21 167.2 8.8 88 1236-1325 2-97 (240)
446 COG1135 AbcC ABC-type metal io 99.6 2.2E-16 4.8E-21 174.8 9.2 89 1237-1325 2-103 (339)
447 cd03247 ABCC_cytochrome_bd The 99.6 3.1E-16 6.8E-21 168.0 8.5 89 1237-1325 1-94 (178)
448 PRK13631 cbiO cobalt transport 99.6 6.6E-16 1.4E-20 180.2 11.5 93 1233-1325 18-137 (320)
449 cd03288 ABCC_SUR2 The SUR doma 99.6 5.1E-16 1.1E-20 176.2 10.0 93 1233-1325 16-114 (257)
450 cd03244 ABCC_MRP_domain2 Domai 99.6 5.3E-16 1.2E-20 172.0 9.9 92 1235-1326 1-98 (221)
451 cd03246 ABCC_Protease_Secretio 99.6 6.2E-16 1.4E-20 165.0 9.9 89 1237-1325 1-95 (173)
452 cd03241 ABC_RecN RecN ATPase i 99.6 1.8E-15 3.9E-20 173.4 13.7 76 752-828 170-249 (276)
453 PRK13646 cbiO cobalt transport 99.6 7.5E-16 1.6E-20 177.5 10.5 91 1236-1326 2-107 (286)
454 COG2884 FtsE Predicted ATPase 99.6 4E-16 8.8E-21 161.2 6.9 88 1237-1325 2-99 (223)
455 cd03263 ABC_subfamily_A The AB 99.6 7.8E-16 1.7E-20 170.6 9.6 90 1237-1326 1-96 (220)
456 TIGR00960 3a0501s02 Type II (G 99.6 7.8E-16 1.7E-20 170.1 9.5 90 1237-1326 2-101 (216)
457 COG1125 OpuBA ABC-type proline 99.6 4.9E-16 1.1E-20 167.0 7.1 87 1237-1325 2-95 (309)
458 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 9.2E-16 2E-20 169.8 9.0 89 1237-1325 1-102 (218)
459 PRK13637 cbiO cobalt transport 99.6 1.4E-15 2.9E-20 175.4 10.6 90 1236-1325 2-104 (287)
460 cd03250 ABCC_MRP_domain1 Domai 99.6 1.1E-15 2.3E-20 167.5 8.8 82 1237-1325 1-85 (204)
461 cd03266 ABC_NatA_sodium_export 99.6 1.5E-15 3.2E-20 168.1 10.0 90 1237-1326 2-99 (218)
462 cd03252 ABCC_Hemolysin The ABC 99.6 1.3E-15 2.8E-20 170.9 9.2 90 1237-1326 1-96 (237)
463 COG1120 FepC ABC-type cobalami 99.6 1E-15 2.2E-20 169.7 8.3 87 1236-1324 2-95 (258)
464 PRK11629 lolD lipoprotein tran 99.6 1.8E-15 4E-20 169.2 10.3 91 1236-1326 5-108 (233)
465 cd03285 ABC_MSH2_euk MutS2 hom 99.6 3.7E-16 8E-21 173.0 4.6 153 643-834 17-175 (222)
466 cd03292 ABC_FtsE_transporter F 99.6 1.7E-15 3.8E-20 167.0 9.5 88 1237-1325 1-98 (214)
467 TIGR02314 ABC_MetN D-methionin 99.6 2.2E-15 4.8E-20 176.8 10.8 90 1237-1326 2-103 (343)
468 PRK13643 cbiO cobalt transport 99.6 2.3E-15 5E-20 173.6 10.5 90 1237-1326 2-106 (288)
469 cd03223 ABCD_peroxisomal_ALDP 99.6 1.9E-15 4.2E-20 160.1 9.1 84 1237-1326 1-84 (166)
470 cd03224 ABC_TM1139_LivF_branch 99.6 1.8E-15 3.9E-20 167.9 9.3 88 1237-1326 1-96 (222)
471 cd03259 ABC_Carb_Solutes_like 99.6 1.8E-15 3.9E-20 166.9 9.2 88 1237-1326 1-93 (213)
472 cd03248 ABCC_TAP TAP, the Tran 99.6 1.8E-15 4E-20 168.4 9.2 94 1233-1326 8-108 (226)
473 PRK14250 phosphate ABC transpo 99.6 2.1E-15 4.6E-20 169.6 9.7 89 1236-1326 3-97 (241)
474 cd03260 ABC_PstB_phosphate_tra 99.6 1.7E-15 3.7E-20 168.7 8.8 88 1237-1326 1-101 (227)
475 cd03261 ABC_Org_Solvent_Resist 99.6 2.1E-15 4.5E-20 169.0 9.4 88 1237-1326 1-98 (235)
476 PRK13647 cbiO cobalt transport 99.6 2.4E-15 5.2E-20 172.3 10.1 90 1236-1326 4-101 (274)
477 cd03293 ABC_NrtD_SsuB_transpor 99.6 2.6E-15 5.6E-20 166.5 9.9 90 1237-1326 1-94 (220)
478 COG1127 Ttg2A ABC-type transpo 99.6 1.8E-15 3.9E-20 162.4 8.1 89 1235-1325 7-105 (263)
479 cd03258 ABC_MetN_methionine_tr 99.6 2.3E-15 4.9E-20 168.4 9.5 90 1237-1326 2-103 (233)
480 cd03254 ABCC_Glucan_exporter_l 99.6 2.3E-15 4.9E-20 167.9 9.3 90 1235-1325 1-96 (229)
481 cd03243 ABC_MutS_homologs The 99.6 7.4E-16 1.6E-20 168.6 5.3 152 648-835 21-174 (202)
482 PRK10744 pstB phosphate transp 99.6 3.2E-15 6.9E-20 170.1 10.6 92 1233-1326 10-114 (260)
483 COG3638 ABC-type phosphate/pho 99.6 1.9E-15 4.2E-20 161.7 8.2 89 1236-1325 3-101 (258)
484 TIGR02673 FtsE cell division A 99.6 3E-15 6.5E-20 165.2 10.0 88 1237-1325 2-99 (214)
485 PRK13635 cbiO cobalt transport 99.6 3E-15 6.4E-20 171.9 10.3 91 1236-1326 5-103 (279)
486 PRK14269 phosphate ABC transpo 99.6 2.8E-15 6E-20 169.1 9.5 89 1236-1326 2-99 (246)
487 PRK13632 cbiO cobalt transport 99.6 3.3E-15 7.2E-20 170.9 10.2 91 1236-1326 7-105 (271)
488 cd03230 ABC_DR_subfamily_A Thi 99.6 3.5E-15 7.7E-20 159.2 9.6 88 1237-1326 1-94 (173)
489 cd03242 ABC_RecF RecF is a rec 99.6 1.7E-14 3.7E-19 164.8 15.8 88 738-829 165-269 (270)
490 cd03296 ABC_CysA_sulfate_impor 99.6 3.9E-15 8.4E-20 167.2 10.3 89 1236-1326 2-95 (239)
491 cd03219 ABC_Mj1267_LivG_branch 99.6 2.8E-15 6.1E-20 168.0 9.1 87 1237-1325 1-95 (236)
492 cd03226 ABC_cobalt_CbiO_domain 99.6 2.6E-15 5.7E-20 164.6 8.3 88 1238-1326 1-93 (205)
493 cd03228 ABCC_MRP_Like The MRP 99.6 3.9E-15 8.4E-20 158.6 9.4 89 1237-1325 1-95 (171)
494 cd03262 ABC_HisP_GlnQ_permease 99.6 4E-15 8.6E-20 164.0 9.8 87 1237-1325 1-96 (213)
495 cd03229 ABC_Class3 This class 99.6 4.5E-15 9.7E-20 159.1 9.8 87 1237-1325 1-96 (178)
496 PRK13650 cbiO cobalt transport 99.6 4.4E-15 9.6E-20 170.5 10.4 91 1236-1326 4-103 (279)
497 PRK14242 phosphate transporter 99.6 4.1E-15 9E-20 168.4 10.1 89 1236-1326 6-107 (253)
498 PRK13634 cbiO cobalt transport 99.6 4.4E-15 9.4E-20 171.5 10.4 91 1236-1326 2-107 (290)
499 cd03295 ABC_OpuCA_Osmoprotecti 99.6 4E-15 8.7E-20 167.4 9.8 89 1237-1326 1-96 (242)
500 PRK10908 cell division protein 99.6 4.3E-15 9.3E-20 165.0 9.9 88 1237-1325 2-99 (222)
No 1
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.8e-246 Score=2325.46 Aligned_cols=1090 Identities=42% Similarity=0.687 Sum_probs=1015.4
Q ss_pred CCCcccCC--hhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHH
Q 000713 232 ITGFAAAG--FFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHW 309 (1335)
Q Consensus 232 ~~p~~~a~--~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~ 309 (1335)
++|.+.++ |+|++||||++|++++|||++|+.+|+|+++++|+++.++++|+++|+++.++.+ ++|+++++++++||
T Consensus 122 ~~~~~~~~~~~~S~~~f~W~~~l~~~g~k~~L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~-~~psl~~al~~~f~ 200 (1381)
T KOG0054|consen 122 PNPLPEASAGFLSRLTFSWMTPLLRKGYKKPLELKDLWSLSPEDSSETLVKRLESLWEKELGRSG-KKPSLLRALLRTFG 200 (1381)
T ss_pred CCcccccchhHHHHHHHHHHHHHHHhhccCCCChhhcccCChhhhhhHHHHHHHHHHHHHhcccc-CCcHHHHHHHHHHH
Confidence 34444444 4999999999999999999999999999999999999999999999999875433 67999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 310 RDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAA 389 (1335)
Q Consensus 310 ~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~ 389 (1335)
+++++.++++++.+.+.|++|++|+.+++|+++++.+.+.||+||+++|++.++++++.|||+|..+++|+|+|++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~ 280 (1381)
T KOG0054|consen 201 RTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA 280 (1381)
T ss_pred HHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH
Confidence 99999999999999999999999999999999987778899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 390 IYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTP 469 (1335)
Q Consensus 390 Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~ 469 (1335)
||+|+|++++.+++++++|+|+|+|++|++|++++++++|.+|++|+|+++++++||..+|+++++|++++++++|+|.+
T Consensus 281 IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~ 360 (1381)
T KOG0054|consen 281 IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSF 360 (1381)
T ss_pred HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVST 549 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~ 549 (1335)
++++++++|++.|+.+|+|+++|||+|+|||+|||||||++|.++|+++|++|++++||..|..+++.++++++|+++++
T Consensus 361 ~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~ 440 (1381)
T KOG0054|consen 361 LAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV 440 (1381)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccE
Q 000713 550 ATFGACY-FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAI 628 (1335)
Q Consensus 550 ~tF~~~~-l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i 628 (1335)
+||++|+ +.++.+||++||+++|+||+|+.|+.++|..++.++|++||++|+++||..+|.+++..++.+..+ .+..|
T Consensus 441 ~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~-~~~~i 519 (1381)
T KOG0054|consen 441 VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEA-GENAI 519 (1381)
T ss_pred HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCC-CCceE
Confidence 9999999 778899999999999999999999999999999999999999999999999999887665333222 56689
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHH
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~ 708 (1335)
+++|++|+|++++..++|+||||+|++|+++||||++||||||||++|+||+++.+|+|.++|.+|||||+|||+|+|||
T Consensus 520 ~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvr 599 (1381)
T KOG0054|consen 520 EIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVR 599 (1381)
T ss_pred EEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHH
Confidence 99999999987555679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
|||+||.+||+++|++++++|+|++|++.+|.||+|+|||||.||||||||||+||||+|+|+||||||||+||||+|++
T Consensus 600 eNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg 679 (1381)
T KOG0054|consen 600 ENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVG 679 (1381)
T ss_pred HhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCc
Q 000713 789 SSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQ 868 (1335)
Q Consensus 789 ~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 868 (1335)
+|||++|+++.+++||+|+|||+++++++||.|++|+||+|.++|+|+|+++.+..+.++..+.......+ ........
T Consensus 680 ~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~ 758 (1381)
T KOG0054|consen 680 KHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEE-ASEKDLES 758 (1381)
T ss_pred HHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhccc-cccccccc
Confidence 99999999999999999999999999999999999999999999999999998888888743322111111 00000000
Q ss_pred CCCCCc---cc--ccccc-cccccccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhH
Q 000713 869 KSGMPA---KE--IKKGH-VEKQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNS 942 (1335)
Q Consensus 869 ~~~~~~---~~--~~~~~-~~~~~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 942 (1335)
...... +. ..+.+ .+..+..++..+++++|+|++|.|+|++|+.|+++.+|++.++++++++++.++.++++||
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~ 838 (1381)
T KOG0054|consen 759 GESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNY 838 (1381)
T ss_pred cccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 00000 0111122235678889999999999999999999988888888888899999999999999
Q ss_pred hhh-ccccC---CC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhH
Q 000713 943 WLA-ANVEN---PN--VSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRIL 1016 (1335)
Q Consensus 943 wl~-w~~~~---~~--~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIl 1016 (1335)
||+ |.+++ .. .+..+|+++|++++++++++.+++++.+..++++||++||++|+++|+||||+|||+||+||||
T Consensus 839 WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRIL 918 (1381)
T KOG0054|consen 839 WLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRIL 918 (1381)
T ss_pred HHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchh
Confidence 999 65543 11 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHH
Q 000713 1017 SRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVAN 1096 (1335)
Q Consensus 1017 nRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s 1096 (1335)
||||+|++.||..+|..+..++.++++++++++++++++|+++++++|+.++|+++|+||+++||||||||+++|||+|+
T Consensus 919 NRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~s 998 (1381)
T KOG0054|consen 919 NRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYS 998 (1381)
T ss_pred hhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH
Q 000713 1097 HLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM 1176 (1335)
Q Consensus 1097 ~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Gl 1176 (1335)
||+||++|++|||||++|++|.++|++++|.|++++|+..++|||+++|+|++|+++++++++++++.+.+..+||.+|+
T Consensus 999 h~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGL 1078 (1381)
T KOG0054|consen 999 HFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGL 1078 (1381)
T ss_pred hHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766588999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCcccc
Q 000713 1177 ALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKG 1256 (1335)
Q Consensus 1177 alsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~ 1256 (1335)
+++||+++++.++|++|+.+++|++|+|||||.||+++|+|+|+..++.+||++||++|+|+|+|+++||||++|+||||
T Consensus 1079 slsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~ 1158 (1381)
T KOG0054|consen 1079 SLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKG 1158 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcC
Confidence 99999999999999999999999999999999999999999888888878999999999999999999999999999999
Q ss_pred ceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHh
Q 000713 1257 ISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKE 1324 (1335)
Q Consensus 1257 is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE 1324 (1335)
|||+|+||||||||||||||||||++||||++||.+|+|.|||+||++ |++++++||||+||+||||+
T Consensus 1159 is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~ 1232 (1381)
T KOG0054|consen 1159 ISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRF 1232 (1381)
T ss_pred ceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCcccc
Confidence 999999999999999999999999999999999999999999999997 67999999999999999995
No 2
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-185 Score=1865.73 Aligned_cols=1288 Identities=29% Similarity=0.469 Sum_probs=1071.6
Q ss_pred ccCCCC--CCCccc--ccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc--cchhhHHHHHHHHH
Q 000713 13 GCSDIG--GKPCHN--AFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQ--RFTTLQKVAAVVNG 86 (1335)
Q Consensus 13 ~c~~~~--~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (1335)
.|+++. +|++.+ .+...+|| ++++++.+++.+|++++++..++...+.....++..+ .........++||.
T Consensus 9 ~c~~~~~~~~~~~~~~~~~~~~~c---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1622)
T PLN03130 9 YCRPVPNGVWAKKVDNAFGAYTPC---ATDSLVINISHLVLLGLCLYRIWLIKKDHKVQRFCLRSKWYNYFLALLAAYCT 85 (1622)
T ss_pred hcCCCccCCCCcccccccCCCCcc---HHhhHHHHHHHHHHHHHHHHHHHHhccccccCCccccchHHHHHHHHHHHHHH
Confidence 564332 344442 35558999 9999999999999999999988866331111112212 11134445555555
Q ss_pred HHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHH---HHHHHHHH
Q 000713 87 CLGIVYLCLATWILEEKLRK-THTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLS---FLFAGIVC 160 (1335)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~---~~~~~~~~ 160 (1335)
...+++...+++.+. .... +........++.+++..++++++..+...++.+ .+++.+++||++. +++.++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (1622)
T PLN03130 86 AEPLFRLVMGISVLN-LDGQTSLPPFEIVSLIVEALTWCSMLVMIGVETKIYIREFRWYVRFAVIYVLVGDAVMLNLV-- 162 (1622)
T ss_pred HHHHHHHHHHhhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeehhHHHhhHHHHHHHH--
Confidence 555555444433321 1111 122222232555677777777666654444433 6899999999999 666665
Q ss_pred HHHHHHHhhcccccccchhhhhhHHHHHHHHHHH-hhccccccccccccCCCccCCCCCCc---CCCCCCCCCCCCCCcc
Q 000713 161 VLSIFAAILSKDVTIKTALDVLSFPGAILLLLCA-YKVFKHEETDVKIGENGLYAPLNGEA---NGLGKGDSVSQITGFA 236 (1335)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~p~~ 236 (1335)
........+... ..++..+.+.+.+.++. +... +..+.+ .+.|...+. ..|++...+.+++||+
T Consensus 163 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 230 (1622)
T PLN03130 163 -LSVKEYYSSFVL----YLYISEVAAQVLFGILLLVYFP-NLDPYP------GYTPIGSESVDDYEYEELPGGEQICPER 230 (1622)
T ss_pred -HHHHHHHhcccc----ceehhHHHHHHHHHHHHHHHHh-cCCCCc------ccccccccccccccccCCcccCCCCccc
Confidence 122222222100 11333333333322222 1111 111100 121111000 0012223346779999
Q ss_pred cCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 000713 237 AAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSG 316 (1335)
Q Consensus 237 ~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~ 316 (1335)
+||+|||++|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.+ +++|+|+++++|+||+.++.++
T Consensus 231 ~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~ 307 (1622)
T PLN03130 231 HANIFSRIFFGWMTPLMQLGYKRPLTEKDVWKLDTWDQTETLYRSFQKCWDEELK---KPKPWLLRALNNSLGGRFWLGG 307 (1622)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997743 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000713 317 FFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLR 396 (1335)
Q Consensus 317 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ 396 (1335)
+++++.+++.+++|++++.+++++.+++ ..+.|+.++++++++.++.+++.++|++...++|+++|+++...+|+|.++
T Consensus 308 ~~~i~~~~~~~~~P~ll~~li~~v~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~ 386 (1622)
T PLN03130 308 FFKIGNDLSQFVGPLLLNLLLESMQNGE-PAWIGYIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLR 386 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997654 346688888888888888888889999999999999999999999999999
Q ss_pred CChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 397 LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476 (1335)
Q Consensus 397 ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~ 476 (1335)
++...+++.++|+++|+|++|++++.+++.++|.+|..|+++++++++||..+|+++++|++++++++|++.++++++++
T Consensus 387 l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~ 466 (1622)
T PLN03130 387 LTHEGRKKFTSGKITNLMTTDAEALQQICQQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQK 466 (1622)
T ss_pred CChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 000713 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACY 556 (1335)
Q Consensus 477 ~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~ 556 (1335)
.+++.|+.+|+|++.++|+|+|||+||+|+||+.|.+++++.|++|++..++..+..++..+++...|.++++++|++|.
T Consensus 467 ~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~v~~~~fg~~~ 546 (1622)
T PLN03130 467 LTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIPVLVTVVSFGVFT 546 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888889889999999999
Q ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEE
Q 000713 557 FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFS 636 (1335)
Q Consensus 557 l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~ 636 (1335)
+.++++|++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|...... .+... ....|+++|++|+
T Consensus 547 ~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~--~~~~~-~~~~I~~~nvsf~ 623 (1622)
T PLN03130 547 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN--PPLEP-GLPAISIKNGYFS 623 (1622)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC--CcccC-CCCceEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999998766432211 11011 2346999999999
Q ss_pred ecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-cEEEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTIQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 637 ~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
|++++++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |+|.++|+++||+|+||++++||||||+||+
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~ 703 (1622)
T PLN03130 624 WDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGS 703 (1622)
T ss_pred ccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCC
Confidence 976445689999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
++++++|++++++|+|.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++++
T Consensus 704 ~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~ 783 (1622)
T PLN03130 704 PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKC 783 (1622)
T ss_pred cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCc-CCCCC-
Q 000713 796 VMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQ-KSGMP- 873 (1335)
Q Consensus 796 ~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~- 873 (1335)
+++.++|+|+|+|||+++.++.+|+|++|++|+|++.|+++|+.++.+.+.++...+....+..+........ .....
T Consensus 784 l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1622)
T PLN03130 784 IKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPV 863 (1622)
T ss_pred hhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccc
Confidence 9887889999999999999999999999999999999999999988888888776543211110000000000 00000
Q ss_pred cc-ccccc--ccc-cccccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccc
Q 000713 874 AK-EIKKG--HVE-KQFEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANV 948 (1335)
Q Consensus 874 ~~-~~~~~--~~~-~~~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~ 948 (1335)
.. +.+.. ... ..++......+.++|+++.|.|++++|+.|+++.++.+.+.+++++.++.++..+++++|++ |.+
T Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~ 943 (1622)
T PLN03130 864 ANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTD 943 (1622)
T ss_pred cccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 00000 000 00011112345677889999999999999999877766666666777788889999999999 654
Q ss_pred cC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHH
Q 000713 949 EN--PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIV 1026 (1335)
Q Consensus 949 ~~--~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~v 1026 (1335)
+. .......|+++|++++++..++.+++.+++...+.++++++|++++++++++||+|||++|+|||+|||++|++.+
T Consensus 944 ~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~i 1023 (1622)
T PLN03130 944 QGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDI 1023 (1622)
T ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHH
Confidence 32 1223567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchH
Q 000713 1027 DLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAM 1106 (1335)
Q Consensus 1027 D~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~ 1106 (1335)
|..+|..+..++..++.++++++++++.+|+++++++|++++++.++++|.+++|+++|++..++||+++||+|+++|+.
T Consensus 1024 d~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~ 1103 (1622)
T PLN03130 1024 DRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLS 1103 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CcCHHHHHHHHHHHH
Q 000713 1107 TIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPG----TFTPGFIGMALSYGL 1182 (1335)
Q Consensus 1107 tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~----~~~~g~~Glalsy~l 1182 (1335)
|||||+++++|.+.+.+.+|.++++.+.....++|+++|+++++++++++.+.+++..... ...++.+|++++|++
T Consensus 1104 tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~ 1183 (1622)
T PLN03130 1104 TIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYAL 1183 (1622)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877776665543211 122789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEee
Q 000713 1183 SLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFE 1262 (1335)
Q Consensus 1183 ~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~ 1262 (1335)
+++..++++++.++++|+.++|+||+.+|.++|+|++...++..|++.||.+|.|+|+||+|+|+++.|+|||||||+|+
T Consensus 1184 ~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~ 1263 (1622)
T PLN03130 1184 NITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEIS 1263 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEc
Confidence 99999999999999999999999999999999998875545556778899999999999999999988889999999999
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1263 GGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1263 ~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 999999999999999999999999999999999999999986 578999999999999999998
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=6e-181 Score=1822.85 Aligned_cols=1287 Identities=28% Similarity=0.451 Sum_probs=1065.4
Q ss_pred ccCCCC--CCCccc--ccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc--cchhhHHHHHHHHH
Q 000713 13 GCSDIG--GKPCHN--AFLLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQ--RFTTLQKVAAVVNG 86 (1335)
Q Consensus 13 ~c~~~~--~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 86 (1335)
.|+++. +|++.+ .+...+|| ++++++.+++.+|++++++..++...+++....+..+ ..........+|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1495)
T PLN03232 9 YCKPIAEGFWEKTVDGAFGAYTPC---AIDSLVMIVSHSVLLGLCFYRIWIILDNAKAQIYVLRKKYYNCVLGILACYCV 85 (1495)
T ss_pred hcCCccccCCCcccccccCCCCcc---HHhhHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchHHHHHHHHHHHHHH
Confidence 565433 344442 34458999 9999999999999999999888865312211112211 11123334445555
Q ss_pred HHHHHHHHHHHHHHHHhhhc-cCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHH---HHHHHHHH
Q 000713 87 CLGIVYLCLATWILEEKLRK-THTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLS---FLFAGIVC 160 (1335)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~---~~~~~~~~ 160 (1335)
...+++...+.+.+. .... +........++.+++..++++++..+...++.+ .+++++++||++. +++.++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 162 (1495)
T PLN03232 86 VEPVLRLVMGISLFD-MDEETDLPPFEVASLMVEAFAWFSMLVLIGLETKQYVKEFRWYVRFGVVYVLVADAVLLDLV-- 162 (1495)
T ss_pred HHHHHHHHHHhhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeehhHhhhhHHHHHHH--
Confidence 554444333333211 1111 112222232666777778887777655444443 6899999999999 777665
Q ss_pred HHHHHHHhhcccccccchhhhhhHHHHHHHHHHH-hhccccccccccccCCCccCCCC---CCcCCCCCCCCCCCCCCcc
Q 000713 161 VLSIFAAILSKDVTIKTALDVLSFPGAILLLLCA-YKVFKHEETDVKIGENGLYAPLN---GEANGLGKGDSVSQITGFA 236 (1335)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~p~~ 236 (1335)
........+... ..++..+.+.+.+.+.. +... +....+ .+.+.. .++..++..+.+.+++||+
T Consensus 163 -~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 230 (1495)
T PLN03232 163 -LPLKNSINRTAL----YLCISSRCCQALFGILLLVYIP-ELDPYP------GYHILNNESLDNVEYDALRGGENICPER 230 (1495)
T ss_pred -HHHHHHHhcccc----ceehhHHHHHHHHHHHHHHhcc-cCCCCC------cccccccccccccccccccccCCCCccc
Confidence 112222222100 11333333333222222 1111 111100 111000 0000011222346789999
Q ss_pred cCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHHHHHHH
Q 000713 237 AAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRDIFMSG 316 (1335)
Q Consensus 237 ~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~~~~~~ 316 (1335)
+||+|||++|+|++|++++|||++|+.+|||+|+++|+++.++++|++.|+++.+ .++|+|+++++++|++.++.++
T Consensus 231 ~a~~~s~~~f~w~~pl~~~g~~~~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~---~~~~~l~~~l~~~~~~~~~~~~ 307 (1495)
T PLN03232 231 YASIFSRIYFSWMTPLMQLGYRKPITEKDVWQLDQWDQTETLIKRFQRCWTEESR---RPKPWLLRALNNSLGGRFWLGG 307 (1495)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChhhhHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987742 3468999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 000713 317 FFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLR 396 (1335)
Q Consensus 317 ~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ 396 (1335)
+++++.+++.+++|++++.+++++++++ ..+.|+.++++++++.++.+++.++|++...++++++|+.+...+|+|.++
T Consensus 308 ~~~i~~~~~~~~~P~ll~~li~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~ 386 (1495)
T PLN03232 308 IFKIGHDLSQFVGPVILSHLLQSMQEGD-PAWVGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLR 386 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999997654 345688899999999999999999999999999999999999999999999
Q ss_pred CChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 397 LSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQHK 476 (1335)
Q Consensus 397 ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~ 476 (1335)
++....+++++|+++|+|++|++++.++..++|.+|..|++++++++++|..+|+++++|++++++++|++.++++++++
T Consensus 387 l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~ 466 (1495)
T PLN03232 387 LTHEARKNFASGKVTNMITTDANALQQIAEQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRK 466 (1495)
T ss_pred CChhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 000713 477 FQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACY 556 (1335)
Q Consensus 477 ~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~ 556 (1335)
.+++.|+.+|+|.+.++|+++|||+||+|+||+.|.+++++.|++|++..++..+..+...+++...|.++++++|++|.
T Consensus 467 ~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~~~ 546 (1495)
T PLN03232 467 LTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIPVVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888888888888889999999
Q ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEE
Q 000713 557 FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFS 636 (1335)
Q Consensus 557 l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~ 636 (1335)
+.++++|++.+|+++++++.++.|+..+|..+..+.++++|++||++||+.+|...+.. .+. ......|+++|++|+
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~--~~~-~~~~~~I~~~~vsF~ 623 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN--PPL-QPGAPAISIKNGYFS 623 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc--CCc-CCCCCcEEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999998765322111 111 112346999999999
Q ss_pred ecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcE-EEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 637 WEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT-IQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 637 ~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~-i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
|+++.++++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|. +.+++++|||+|+||++++||||||+||.
T Consensus 624 y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~ 703 (1495)
T PLN03232 624 WDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS 703 (1495)
T ss_pred cCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC
Confidence 98644568999999999999999999999999999999999999999974 56789999999999999999999999999
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
++++++|++++++|++.+|++.+|+||+|+|||+|.+|||||||||+||||+|++||||||||||||||+++++++++++
T Consensus 704 ~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~ 783 (1495)
T PLN03232 704 DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSC 783 (1495)
T ss_pred ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhccccccccCCCcCCCCCcc
Q 000713 796 VMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEVTPSQKSGMPAK 875 (1335)
Q Consensus 796 ~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1335)
+.+.++++|+|+|||+++.++.||+|++|++|+|++.|+++|+.++++.+.++.+.+....+..+..+............
T Consensus 784 l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1495)
T PLN03232 784 MKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTNDENILKLGPTV 863 (1495)
T ss_pred hhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccccccccccccc
Confidence 88777899999999999999999999999999999999999999888888887765432111100000000000000000
Q ss_pred ccc--ccccccc-cccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccCC
Q 000713 876 EIK--KGHVEKQ-FEVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVENP 951 (1335)
Q Consensus 876 ~~~--~~~~~~~-~~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~~ 951 (1335)
+.+ +...... +.......+.++|++++|.+++++|+.|+++.++++.+.+++++.+..++..+++++|++ |+++..
T Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~ 943 (1495)
T PLN03232 864 TIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQST 943 (1495)
T ss_pred cccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 000 0000000 001112235678889999999999999999887766666667777788888999999999 655321
Q ss_pred --CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhh
Q 000713 952 --NVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD 1029 (1335)
Q Consensus 952 --~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~ 1029 (1335)
..+..+|+++|++++++..++.+++.+++...+.++++++|++++++++|+|++|||++|+|||+|||++|++.||..
T Consensus 944 ~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~ 1023 (1495)
T PLN03232 944 PKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRN 1023 (1495)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHH
Confidence 234568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHH
Q 000713 1030 IPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIR 1109 (1335)
Q Consensus 1030 lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIR 1109 (1335)
+|..+..++..++.++++++++++.+|+++++++|+.++++.++++|.+++|+++|++..+++|+++|++|+++|+.|||
T Consensus 1024 l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIr 1103 (1495)
T PLN03232 1024 VANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIR 1103 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHh
Confidence 99999999999999999999998888888888899998889999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----CHHHHHHHHHHHHHH
Q 000713 1110 AFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTF-----TPGFIGMALSYGLSL 1184 (1335)
Q Consensus 1110 Af~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~-----~~g~~Glalsy~l~l 1184 (1335)
||+++++|.+++.+.+|.++++.+.....++|+.+|+++++++++.+.+.+++.. .+.+ .++.+|++++|+.++
T Consensus 1104 af~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1104 AYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLR-NGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887766665555543 2221 267899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000713 1185 NSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1264 (1335)
Q Consensus 1185 ~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~G 1264 (1335)
++.++++++.++++|+.++|+|||.+|.++|+|++...++..|+++||.+|.|+|+||+++|+|+.++||||+||+|+||
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~G 1262 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPS 1262 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCC
Confidence 99999999999999999999999999999998876543444567789999999999999999988888999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1265 ekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 9999999999999999999999999999999999999986 578999999999999999998
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=6.1e-179 Score=1805.51 Aligned_cols=1268 Identities=29% Similarity=0.483 Sum_probs=1055.1
Q ss_pred ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccccch-hhHH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 000713 27 LLLSDPNSCINHALIICFDILLLAMLLFNMIQKSSSKSLYIPVRLQRFT-TLQK-VAAVVNGCLGIVYLCLATWILEEKL 104 (1335)
Q Consensus 27 ~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (1335)
.+.+|| |++.+++.+|..+++++.+..++...+++.. . .+... ...+ ....+..++.+....+.+|. ..
T Consensus 21 ~d~t~~---f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~---~~ 91 (1522)
T TIGR00957 21 PDFTKC---FQNTVLAWVPCFYLWVCFPCYFLYLSRHDRG--Y-IQMTHLNKTKTALGFLLWIVCWADLFYSFWE---RS 91 (1522)
T ss_pred CCCCcc---HHHHHHHHHHHHHHHHHHHHHHHHhhccCCC--c-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHh---cc
Confidence 456799 9999999999998888888777755332221 0 11111 1111 11122222222222233332 11
Q ss_pred hccCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhh
Q 000713 105 RKTHTALPLNWWLLVLFQGATWLLVTLIVSLRGNH--LPRAPMRLLSVLSFLFAGIVCVLSIFAAILSKDVTIKTALDVL 182 (1335)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1335)
....+ .+..+..+++..++|++++++...++++ +.|..+.+||++..++.+..+++........... . ..+...
T Consensus 92 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 167 (1522)
T TIGR00957 92 HGRAP--APVFLVSPTLLGITMLLATFLIQLERRKGVQSSGIMLTFWLVALVCALAILRSKILLALKEDAI-V-DPFRDT 167 (1522)
T ss_pred ccccc--cchhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcchhHHHHHHHHHHHHHHHHHHHHhhccccc-c-cceehh
Confidence 11011 1344556677888887777666665554 6788999999999999998888764321111000 0 011011
Q ss_pred hHHHHHHHHHHHhhccccccccccccCCCccCCCCCCcCCCCCCCCCCCCCCcccCChhHHHHHHhHHHHHHhcccCCCC
Q 000713 183 SFPGAILLLLCAYKVFKHEETDVKIGENGLYAPLNGEANGLGKGDSVSQITGFAAAGFFIRLTFWWLNPLMKRGREKTLG 262 (1335)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~ 262 (1335)
.+...+.+....+...... ...|...+. ....+.+||++||++||++|||+||++++|||++|+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~------~~~~~~~~e~~a~~~s~~~f~W~~pl~~~g~~~~L~ 231 (1522)
T TIGR00957 168 TFYIYFALVLSQLVLSCFS----------DKSPLFSET------NHDPNPCPESSASFLSRITFWWITGMAVYGYRQPLE 231 (1522)
T ss_pred hHHHHHHHHHHHHHHHhhc----------CCCCccccc------cccCCCCCcccCCHHHHHHHHHhHHHHHHHhcCCCC
Confidence 1111111111111111000 112332210 111346899999999999999999999999999999
Q ss_pred CCCCCCCChhchHHHHHHHHHHHHHHhhhc--------------------------------------CCCCCchHHHHH
Q 000713 263 DEDIPDLRKAEQAESCYFQFLDQLNKQKQA--------------------------------------EPSSQPSILRTI 304 (1335)
Q Consensus 263 ~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~--------------------------------------~~~~~~sl~~~l 304 (1335)
.+|||+++++|+++.++++|++.|+++.++ ++.++++|++++
T Consensus 232 ~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~l 311 (1522)
T TIGR00957 232 ESDLWSLNKEDTSEMVVPVLVENWKKECKKTRKQPVSAVYGKKDPSKPKGSSQLDANEEVEALIVKSPHKPRKPSLFKVL 311 (1522)
T ss_pred hhhccCCCHhHhHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccCCccHHHHH
Confidence 999999999999999999999999876321 012357899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 305 LICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRS 384 (1335)
Q Consensus 305 ~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~ 384 (1335)
+++||+.++.+++++++.+++.+++|++++.+++|+.+++.+.+.||+++++++++.++.+++.++|+|...++|+++|+
T Consensus 312 ~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 312 YKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKT 391 (1522)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999977655556799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 385 LLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITV 464 (1335)
Q Consensus 385 ~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~ 464 (1335)
+|+..||+|.|+++...++++++|+++|+|++|++|+.++..++|.+|..|+++++++++||..+|+++++|++++++++
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~ 471 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMV 471 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH
Q 000713 465 LCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSP 544 (1335)
Q Consensus 465 ~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p 544 (1335)
|++..++++++++++++|+.+|+|++.++|+++|||+||+|+||+.|.+++++.|++|++..++..+...+..+.+..+|
T Consensus 472 ~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 551 (1522)
T TIGR00957 472 PLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTP 551 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888899
Q ss_pred HHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCC
Q 000713 545 VLVSTATFGACYFL--NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIE 622 (1335)
Q Consensus 545 ~lv~~~tF~~~~l~--~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~ 622 (1335)
.++.+++|++|.+. ++.|+++.+|+++++|++++.|+..+|..+..+.++++|++||++||+.+|.++...+......
T Consensus 552 ~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 631 (1522)
T TIGR00957 552 FLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP 631 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC
Confidence 99999999999876 4679999999999999999999999999999999999999999999987765432211111101
Q ss_pred CCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC
Q 000713 623 NVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI 702 (1335)
Q Consensus 623 ~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i 702 (1335)
.....|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|++|||+|+||+
T Consensus 632 ~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l 710 (1522)
T TIGR00957 632 GEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWI 710 (1522)
T ss_pred CCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccc
Confidence 022379999999999743 3579999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
+++||+|||.||.++++++|++++++|++.+|++.+|.||+|.+|++|.+|||||||||+||||+|++||+|||||||||
T Consensus 711 ~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~sa 790 (1522)
T TIGR00957 711 QNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSA 790 (1522)
T ss_pred cCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH--HHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhcccc
Q 000713 783 VDAHTASSLFNDYVM--EALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSER 860 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~--~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 860 (1335)
||+++++++++.+.. +..+++|+|+|||+++.++.||+|++|++|+|++.|+++++.++.+.+.++...+........
T Consensus 791 LD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~ 870 (1522)
T TIGR00957 791 VDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQGH 870 (1522)
T ss_pred cCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccccc
Confidence 999999999999874 456789999999999999999999999999999999999999877778777654322111000
Q ss_pred cccc------CCCcC-----C---------CCCcc-----cc--cc--cc---c---ccccccccccchhhhhhhhcCCc
Q 000713 861 LAEV------TPSQK-----S---------GMPAK-----EI--KK--GH---V---EKQFEVSKGDQLIKQEERETGDI 905 (1335)
Q Consensus 861 ~~~~------~~~~~-----~---------~~~~~-----~~--~~--~~---~---~~~~~~~~~~~l~~~e~r~~G~v 905 (1335)
..+. ....+ + +...+ .. .. .+ . +..+..+...++.++|+++.|.|
T Consensus 871 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v 950 (1522)
T TIGR00957 871 LEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTGQV 950 (1522)
T ss_pred ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcCcc
Confidence 0000 00000 0 00000 00 00 00 0 00000111234567788899999
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccC----CCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 906 GLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVEN----PNVSTLRLIVVYLLIGFVSTLFLMSRSLSS 980 (1335)
Q Consensus 906 ~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~----~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~ 980 (1335)
++++|+.|+++.|. ..+++++++.++.++..++.++|++ |.++. +..+...|+++|++++++..++.+++.+++
T Consensus 951 ~~~~y~~Y~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~~~ 1029 (1522)
T TIGR00957 951 ELSVYWDYMKAIGL-FITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSMAV 1029 (1522)
T ss_pred cHHHHHHHHHHcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754 4444555666777888999999999 65432 122345788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 981 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLF 1060 (1335)
Q Consensus 981 ~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~ 1060 (1335)
...+.++++++|++|+++++++||+|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++.+|++++
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHH
Q 000713 1061 VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140 (1335)
Q Consensus 1061 ~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~ 1140 (1335)
+++|+++++++++++|.+++|+++|++..++||+++|++|+++|+.|||||++|++|.+++.+.+|.++++.+.....++
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCC
Q 000713 1141 WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPE 1220 (1335)
Q Consensus 1141 Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~ 1220 (1335)
|+++++++++++++++++.+.+.. .+.+++|.+|++++|+++++..++++++.++++|+.++|+||+.+|.+.|+|++.
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~ 1268 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVIS-RHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPW 1268 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 999999999888766666555543 4678999999999999999999999999999999999999999999999888764
Q ss_pred cccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCe
Q 000713 1221 VVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGK 1300 (1335)
Q Consensus 1221 ~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGv 1300 (1335)
..++..||++||.+|.|+|+||+++|+++.++|||||||+|+||||||||||||||||||+++|+|++||++|+|.|||+
T Consensus 1269 ~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~ 1348 (1522)
T TIGR00957 1269 QIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGL 1348 (1522)
T ss_pred cccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCE
Confidence 44455677789999999999999999988788999999999999999999999999999999999999999999999999
Q ss_pred ecCC------cCCCceeecccccccccHHhhH
Q 000713 1301 LAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1301 dI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||++ |+++++|||||+||+||||||-
T Consensus 1349 dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NL 1380 (1522)
T TIGR00957 1349 NIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL 1380 (1522)
T ss_pred EccccCHHHHHhcCeEECCCCcccCccHHHHc
Confidence 9986 5789999999999999999983
No 5
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=5.2e-170 Score=1713.03 Aligned_cols=1084 Identities=24% Similarity=0.432 Sum_probs=952.4
Q ss_pred CCCcccCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhcCCCCCchHHHHHHHHHHHH
Q 000713 232 ITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQAEPSSQPSILRTILICHWRD 311 (1335)
Q Consensus 232 ~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~~~~~~~sl~~~l~~~~~~~ 311 (1335)
.+||++||++||++|||+||++++|||++|+.+|||+|+++++++.++++|++.|+++..+ +.++++|+++++++|++.
T Consensus 3 ~~pe~~a~~~s~~~F~W~~pl~~~g~~~~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~L~~~l~~~~~~~ 81 (1490)
T TIGR01271 3 RSPVEKANFLSKLFFWWTRPILRKGYRQKLELSDIYQIPSFDSADNLSERLEREWDRELAS-AKKNPKLLNALRRCFFWR 81 (1490)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHhcCCCChhhccCCChHHhHHHHHHHHHHHHHHHHhc-cCCCChHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999876432 245689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 312 IFMSGFFALIKVLTLSAGPLFLNAFILVAESKAG-FKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAI 390 (1335)
Q Consensus 312 ~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~I 390 (1335)
+++.++++++.+++.+++|++++.+++|++.++. ..+.||.++++++++.++++++.++++|...++|+++|++|+.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~i 161 (1490)
T TIGR01271 82 FVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLI 161 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999964332 245799999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 391 YRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTPL 470 (1335)
Q Consensus 391 y~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~ 470 (1335)
|+|.|+++....++.++|+++|+|++|++|+.+++.++|.+|..|+++++++++||.++|+++++|++++++++|++.++
T Consensus 162 y~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~ 241 (1490)
T TIGR01271 162 YKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACL 241 (1490)
T ss_pred HHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHH
Q 000713 471 AKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTA 550 (1335)
Q Consensus 471 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~ 550 (1335)
++++.++++++|+.+|+|++.++|+|+|||+||+|+||+.|.++++++|++|++.+++..+..++..++++..|.+++++
T Consensus 242 ~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (1490)
T TIGR01271 242 GQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFL 321 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEE
Q 000713 551 TFGACYFLNVPLYASNVFTFVATLRLVQDPIR-IIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAIS 629 (1335)
Q Consensus 551 tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~-~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~ 629 (1335)
+|++|.+.++ ++++++||++++|++|+.|+. .+|..+..+.++.+|++||++||..+|.++... .. ....++
T Consensus 322 ~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~--~~----~~~~i~ 394 (1490)
T TIGR01271 322 SVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEY--NL----TTTEVE 394 (1490)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc--cC----CCCceE
Confidence 9999988754 789999999999999999985 799999999999999999999998877543211 11 223599
Q ss_pred EEeeEEEecCC-------------------------------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhc
Q 000713 630 IKSASFSWEES-------------------------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILG 678 (1335)
Q Consensus 630 i~~~~~~~~~~-------------------------------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG 678 (1335)
++|++|+|+.. ..+++|+|+||+|++|++++|+|||||||||||++|+|
T Consensus 395 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G 474 (1490)
T TIGR01271 395 MVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMG 474 (1490)
T ss_pred EecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 99999999531 01368999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 679 EVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 679 ~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|+|.++|+++||+|+||++++||+|||+||.++++++|++++++|+|.+|++.+|.||+|++|++|.+||||||
T Consensus 475 ~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqk 554 (1490)
T TIGR01271 475 ELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQR 554 (1490)
T ss_pred CCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|||+||||+|++|++|||||||||||+++++++++.++....+++|+|+|||+++.++.||+|++|++|+|++.|+++++
T Consensus 555 qRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l 634 (1490)
T TIGR01271 555 ARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634 (1490)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 99999999999999999999999999999999999888777789999999999999999999999999999999999999
Q ss_pred HhcchHHHHHHHHhh---h----h-------------hc--------ccc--------ccccCCC---------------
Q 000713 839 LASSKEFQELVSAHK---E----T-------------AG--------SER--------LAEVTPS--------------- 867 (1335)
Q Consensus 839 ~~~~~~~~~l~~~~~---~----~-------------~~--------~~~--------~~~~~~~--------------- 867 (1335)
.+....+.+.+.... + . .. .+. ..+....
T Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1490)
T TIGR01271 635 QAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPIASARK 714 (1490)
T ss_pred HhcChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 876665655542100 0 0 00 000 0000000
Q ss_pred --------------c-CC---CCC-------cc--------c-cc---------------------c-------c-----
Q 000713 868 --------------Q-KS---GMP-------AK--------E-IK---------------------K-------G----- 880 (1335)
Q Consensus 868 --------------~-~~---~~~-------~~--------~-~~---------------------~-------~----- 880 (1335)
. +. +.. .. + .+ . .
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1490)
T TIGR01271 715 FSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRREQLQT 794 (1490)
T ss_pred cccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 0 00 000 00 0 00 0 0
Q ss_pred cc-------------cc--------cc-----------ccccccchhhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHH
Q 000713 881 HV-------------EK--------QF-----------EVSKGDQLIKQEERETGDIGLKPYIQYLNQNKGFLFFSIASL 928 (1335)
Q Consensus 881 ~~-------------~~--------~~-----------~~~~~~~l~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~ 928 (1335)
.. ++ .+ +....+++.++|+++.|.++|++|+.|+++.|++.++.++++
T Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~ 874 (1490)
T TIGR01271 795 SFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFVLIFCL 874 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHHHHHHH
Confidence 00 00 00 000011245668888999999999999998876666656666
Q ss_pred HHHHHHHHHHHHhHhhh-ccccC--------C-C-----------c-chhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 929 SHLTFVIGQILQNSWLA-ANVEN--------P-N-----------V-STLRL-IVVYLLIGFVSTLFLMSRSLSSVVLGI 985 (1335)
Q Consensus 929 ~~~~~~~~~~~~~~wl~-w~~~~--------~-~-----------~-~~~~~-~~vy~~l~~~~~~~~~~~~~~~~~~~~ 985 (1335)
+.++.+++..+.++|++ |+.+. + . . ...+| +++|++++++..++.+++.+++...+.
T Consensus 875 ~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1490)
T TIGR01271 875 VIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPLVHTLL 954 (1490)
T ss_pred HHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999998 65311 0 0 0 11233 566666666677888889999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 986 RSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPV 1065 (1335)
Q Consensus 986 ~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl 1065 (1335)
++++++|++++++++++|++|||++|+|||+|||++|++.+|..+|..+..++..++.+++.++++++.+|+++++++|+
T Consensus 955 ~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l 1034 (1490)
T TIGR01271 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPV 1034 (1490)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 000713 1066 IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQR 1145 (1335)
Q Consensus 1066 ~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~r 1145 (1335)
++++++++++|.+++|+++|++..+++|+++||+|+++|+.|||||+++++|.+++.+++|.++++++.....++|+..|
T Consensus 1035 ~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~ 1114 (1490)
T TIGR01271 1035 AVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMR 1114 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCccc--
Q 000713 1146 LETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVE-- 1223 (1335)
Q Consensus 1146 l~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~-- 1223 (1335)
+++++++++..++++++.. ..+++|.+|++++|++++...++++++.++++|+.|+|+|||.+|.+.|+|++...+
T Consensus 1115 ~~~i~~~~~~~~~~l~~~~--~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~ 1192 (1490)
T TIGR01271 1115 IDIIFVFFFIAVTFIAIGT--NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence 9998877665544444432 235788999999999999999999999999999999999999999999887643211
Q ss_pred ------------CCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCC
Q 000713 1224 ------------DNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPA 1291 (1335)
Q Consensus 1224 ------------~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~ 1291 (1335)
...+|+.||..|.|+|+||+++|+++.|+||+||||+|+||||||||||||||||||+++|+|+++ .
T Consensus 1193 ~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~ 1271 (1490)
T TIGR01271 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T 1271 (1490)
T ss_pred cccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C
Confidence 123566899999999999999999888899999999999999999999999999999999999998 7
Q ss_pred CCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1292 RGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1292 ~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+|+|.|||+||+. |+++++|||||+||+||||||.
T Consensus 1272 ~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NL 1312 (1490)
T TIGR01271 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312 (1490)
T ss_pred CcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHh
Confidence 9999999999985 5789999999999999999983
No 6
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=4.3e-160 Score=1616.27 Aligned_cols=1096 Identities=29% Similarity=0.447 Sum_probs=948.4
Q ss_pred CCCCCcccCChhHHHHHHhHHHHHHhcccCCCCCCCCCCCChhchHHHHHHHHHHHHHHhhhc-----------------
Q 000713 230 SQITGFAAAGFFIRLTFWWLNPLMKRGREKTLGDEDIPDLRKAEQAESCYFQFLDQLNKQKQA----------------- 292 (1335)
Q Consensus 230 ~~~~p~~~a~~~s~l~F~W~~pll~~g~~~~L~~~Dl~~l~~~~~~~~~~~~f~~~w~~~~~~----------------- 292 (1335)
..+.||++||||.++++.|++|++.+..|..|+++|+|+...+.|+-++..++.+..++...+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1560)
T PTZ00243 57 YTPVPEETASWFQRYYYGWVYEYVLLASKEQLTEEDLPPPTRDVRAHECGLRLSRAVQAAMYERNAWNCMVGAEVVSTLD 136 (1560)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHhhcccccCCCCcchhhHHHHhHHHHHHHHHHHHhhcccccccccEEEeecc
Confidence 345799999999999999999999999999999999999999999977776665544332110
Q ss_pred --------------------------------------------------------------------------------
Q 000713 293 -------------------------------------------------------------------------------- 292 (1335)
Q Consensus 293 -------------------------------------------------------------------------------- 292 (1335)
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (1560)
T PTZ00243 137 ASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSNMSTLEEPTDVRLYLSS 216 (1560)
T ss_pred ccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCCceeeeeeheeeEeecc
Confidence
Q ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHH
Q 000713 293 ----------EPSSQPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKI 362 (1335)
Q Consensus 293 ----------~~~~~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~ 362 (1335)
.+++..+|+++++++||+.++..++++++.+++.+++|++++.+++|+++++.....|++++++++++.+
T Consensus 217 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~~~~g~~l~~~l~~~~~ 296 (1560)
T PTZ00243 217 TGSVVRPGPPPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNATWGRGLGLVLTLFLTQL 296 (1560)
T ss_pred cccccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHH
Confidence 0123458999999999999999999999999999999999999999997665444468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 363 LESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCI 440 (1335)
Q Consensus 363 ~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~--~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~l 440 (1335)
+++++.++|+|...+.|+++|++|.+.||+|+++++..+.+ +.++|+++|+|++|++++.+++.++|.+|.+|+++++
T Consensus 297 ~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~ 376 (1560)
T PTZ00243 297 IQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLL 376 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987765 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH
Q 000713 441 ALIILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRN 520 (1335)
Q Consensus 441 al~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~ 520 (1335)
++++||..+||++++|++++++++|++.++++++.++++++|+++|+|++.++|+++|||+||+||||+.|.++|++.|+
T Consensus 377 ~~~lL~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~ 456 (1560)
T PTZ00243 377 SILLLSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRA 456 (1560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 521 VEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSR 600 (1335)
Q Consensus 521 ~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~R 600 (1335)
+|++.+++..+..++..++++++|.++.+++|++|++.|++||++++||++++|++++.|+.++|..++.+.++.+|++|
T Consensus 457 ~El~~l~~~~~~~~~~~~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~R 536 (1560)
T PTZ00243 457 RELRYLRDVQLARVATSFVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKR 536 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccc----c------------------c-----------cC------------------------CCCC
Q 000713 601 IVNFLEAPELQSMNI----R------------------Q-----------KG------------------------NIEN 623 (1335)
Q Consensus 601 I~~fL~~~e~~~~~~----~------------------~-----------~~------------------------~~~~ 623 (1335)
|++||+.+|.+.... + + .+ ....
T Consensus 537 I~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (1560)
T PTZ00243 537 ISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRH 616 (1560)
T ss_pred HHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 999998766311000 0 0 00 0000
Q ss_pred CcccEEEEeeEEEecCC-------------------------------------CCCCceeeeeeEeeCCcEEEEEcCCC
Q 000713 624 VNRAISIKSASFSWEES-------------------------------------SSKPTMRNISLEVRPGQKVAICGEVG 666 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~-------------------------------------~~~~~L~~isl~i~~G~~v~IvG~~G 666 (1335)
....+.++|++++|+.. +++++|+|+||+|++|++++|+||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nG 696 (1560)
T PTZ00243 617 PSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATG 696 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCC
Confidence 11246677777664310 12458999999999999999999999
Q ss_pred CCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccc
Q 000713 667 SGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEI 746 (1335)
Q Consensus 667 sGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~i 746 (1335)
|||||||++|+|+++|++|+|.+++++||+||+||++++|++|||.|+.+++.++|++++++|++.+|++.+|+|++|.+
T Consensus 697 sGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 697 SGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 99999999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 747 GERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 747 g~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|++|.+|||||||||+||||+|++|++||||||||+||++++++++++++.+..+|+|+|++||+++.++.+|+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999887666679999999999999999999999999
Q ss_pred CeEEEecChHHHHhcchHHHHHHHHhhhhhcc-c-ccc-ccCCCcC-CC---CCcc--ccccccccc---ccccccccch
Q 000713 827 GEILRAAPYHQLLASSKEFQELVSAHKETAGS-E-RLA-EVTPSQK-SG---MPAK--EIKKGHVEK---QFEVSKGDQL 894 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~-~-~~~-~~~~~~~-~~---~~~~--~~~~~~~~~---~~~~~~~~~l 894 (1335)
|++.+.|+++++.+.. .+.++........+. . +.. +...... .+ .... ..+....+. ........++
T Consensus 857 G~i~~~G~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 935 (1560)
T PTZ00243 857 GRVEFSGSSADFMRTS-LYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935 (1560)
T ss_pred CEEEEecCHHHHHhCh-HHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 9999999999998653 455554332111100 0 000 0000000 00 0000 000000000 0001122356
Q ss_pred hhhhhhhcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhh-ccccCCCcchhHHHHHHHHHHHHHHHHH
Q 000713 895 IKQEERETGDIGLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLA-ANVENPNVSTLRLIVVYLLIGFVSTLFL 973 (1335)
Q Consensus 895 ~~~e~r~~G~v~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~-w~~~~~~~~~~~~~~vy~~l~~~~~~~~ 973 (1335)
.++|+++.|.|+|++|+.|+++.|+...+.++++++++.++...++++|++ |+.+....+...|+++|++++++..++.
T Consensus 936 ~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~l~~y~~~~~~~~~~~ 1015 (1560)
T PTZ00243 936 MTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSAATYLYVYLGIVLLGTFSV 1015 (1560)
T ss_pred hhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccHHHHHHHHHHHHHHHH
Confidence 677888899999999999999887766665666666777888899999999 7654333445678999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 974 MSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAV 1053 (1335)
Q Consensus 974 ~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~ 1053 (1335)
+++.+.....+.++++++|++++++++++|++|||++|+|+|+|||++|++.+|..+|..+..++..++.+++.++++++
T Consensus 1016 ~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1016 PLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHH
Q 000713 1054 VTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFF 1133 (1335)
Q Consensus 1054 ~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~ 1133 (1335)
..|+++++++|+++++++++++|.+.+|+++|+++.++||+++|++|+++|+.|||+|+.+++|.+++.+.+|.+.++.+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99998888899998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000713 1134 HSFAANEWLIQRLETLSATVISSAAFCMVL---LPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQ 1210 (1335)
Q Consensus 1134 ~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~---~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~ 1210 (1335)
.....++|+++++++++++++++++++.+. ...+.+++|.+|++++|+.+++..++++++.+.++|+.|+|+|||.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766554444332 22345789999999999999999999999999999999999999999
Q ss_pred hhc-CCCCCCCc-----------------------ccCCCCC---CCCCccceEEEEEEEEEeCCCCCCccccceEEeeC
Q 000713 1211 YMH-VPSEAPEV-----------------------VEDNRPP---PNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEG 1263 (1335)
Q Consensus 1211 y~~-~~~E~~~~-----------------------~~~~~p~---~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~ 1263 (1335)
|.+ .|+|+... .+...|+ +.||..|.|+|+||+|+|+++.|+|||||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 996 45443110 0011122 24667899999999999999888899999999999
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1264 GHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1264 GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||||||||||||||+++|+|++||++|+|.|||+||+. |+++++|||||+||+||||||.
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNI 1404 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV 1404 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHh
Confidence 99999999999999999999999999999999999999985 5789999999999999999983
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-106 Score=1010.62 Aligned_cols=993 Identities=19% Similarity=0.259 Sum_probs=727.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--Cc----hhHHH---HHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKA--GF----KYEGY---LLAITLFLAKILESLSQ 368 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~--~~----~~~g~---~l~~~l~~~~~~~~l~~ 368 (1335)
..+++.--+.-+.-+.++.+.++++.+...+.-++...+++.+-... .. ...++ +++++++++.+++ .
T Consensus 16 ~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q---~ 92 (1228)
T KOG0055|consen 16 FKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQ---V 92 (1228)
T ss_pred HHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 34444333334444455556666666555555556677777664432 10 11122 2233333444333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 000713 369 RQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-----WFHQIWTTSVQLCIALI 443 (1335)
Q Consensus 369 ~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-----~~h~~w~~plqi~lal~ 443 (1335)
..|.+.+.|...|+|.....++.||...+.+. +++|++++-|+.|++++.|.+. ++|.+-....-++++++
T Consensus 93 ~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~----~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~ 168 (1228)
T KOG0055|consen 93 SCWMRTGERQTARIRSKYLKAILRQDIGWFDT----NSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFY 168 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccceeec----ccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999988766543 4559999999999999998763 45544443334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHH
Q 000713 444 ILFHAVGLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEY 523 (1335)
Q Consensus 444 lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El 523 (1335)
.-|+ .+++++.+.+++......+++.+.+...+..++..+.-+++.|.+.+||+|-.|+-|+...++..+. +
T Consensus 169 ~~W~----Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~----L 240 (1228)
T KOG0055|consen 169 YGWK----LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKA----L 240 (1228)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHH----H
Confidence 3322 5677777788888888999999999999999999999999999999999999999999988888763 3
Q ss_pred HHHHHHHHHHHHHhHHHhHHH------HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 524 KWLSAVQLRKAYNGFLFWSSP------VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVA 597 (1335)
Q Consensus 524 ~~l~~~~~~~a~~~~~~~~~p------~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS 597 (1335)
+..+|+....++...+..... .....++||..++..+..+++++|+++...-+-...|.+..+.++.+.+|++|
T Consensus 241 ~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~a 320 (1228)
T KOG0055|consen 241 ENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAA 320 (1228)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccc
Confidence 333333333333322222222 23444566666666678999999999855555556778888899999999999
Q ss_pred HHHHHHHhcC-CCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHH
Q 000713 598 FSRIVNFLEA-PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676 (1335)
Q Consensus 598 ~~RI~~fL~~-~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~i 676 (1335)
..+|.+-++. |+.+......... ...++.|+++|++|+||.+++.++|+|+||+|++|+.+|+||||||||||++++|
T Consensus 321 a~~I~~~i~~~~~i~~~~~~~~~~-~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL 399 (1228)
T KOG0055|consen 321 AYRIFETIDRKPSIDPYSKGGRVL-SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLL 399 (1228)
T ss_pred hHHHHHHhcCCCCCCcccccCCcc-cccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHH
Confidence 9999999975 4444432111111 1256789999999999998888999999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCC
Q 000713 677 LGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGD 742 (1335)
Q Consensus 677 lG~~~~~~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd 742 (1335)
.|+++|++|+|.++| ++|.|+|+|.+|++||+|||.||+|- ..++.+++.+.....+.+..+|+|+
T Consensus 400 ~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~ 479 (1228)
T KOG0055|consen 400 ARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGY 479 (1228)
T ss_pred HHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhh
Confidence 999999999999998 47999999999999999999999864 5666777777777888999999999
Q ss_pred CccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 743 NTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 743 ~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
+|.+||+|.+|||||||||||||||.+||+||||||||||||++..+ +.+..++...+|+|.|+|+|+++.++++|+|+
T Consensus 480 ~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~-~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~ 558 (1228)
T KOG0055|consen 480 DTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESER-VVQEALDKASKGRTTIVVAHRLSTIRNADKIA 558 (1228)
T ss_pred cccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHH-HHHHHHHHhhcCCeEEEEeeehhhhhccCEEE
Confidence 99999999999999999999999999999999999999999999865 55677888889999999999999999999999
Q ss_pred EEeCCeEEEecChHHHHhcchHHHHHHHHhhhhhcccccccc---CCCcCCC--C--Ccccccc--c--ccc-ccccccc
Q 000713 823 LMSDGEILRAAPYHQLLASSKEFQELVSAHKETAGSERLAEV---TPSQKSG--M--PAKEIKK--G--HVE-KQFEVSK 890 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~--~--~~~~~~~--~--~~~-~~~~~~~ 890 (1335)
+|++|+|+|.|+++||++.++.|.++++.+......++.++. ....... . ....... . ... ...+.++
T Consensus 559 v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~ 638 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIALGGIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGED 638 (1228)
T ss_pred EEECCEEEEecCHHHHHhccchHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccc
Confidence 999999999999999999989999999877544322210000 0000000 0 0000000 0 000 0000000
Q ss_pred ccchhhhhhhhcCCcchHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHhHhhh-----ccccCC---CcchhHHHHH
Q 000713 891 GDQLIKQEERETGDIGLKPYIQYLNQNK-GFLFFSIASLSHLTFVIGQILQNSWLA-----ANVENP---NVSTLRLIVV 961 (1335)
Q Consensus 891 ~~~l~~~e~r~~G~v~~~~y~~Y~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~wl~-----w~~~~~---~~~~~~~~~v 961 (1335)
......+|+ -.++ +++-++.+. .|.++.+.+++.++..+......+-++ ....++ ......|..+
T Consensus 639 ~~~~~~~~~---~~~s---~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~ 712 (1228)
T KOG0055|consen 639 PEEPVSEED---EKVS---FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALI 712 (1228)
T ss_pred ccccccccc---cccc---HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 000001111 1223 333333332 233333333333333322222222222 111111 1123459999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cCchhhHHHHhcChhHHHhhhHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--TPLGRILSRVSSDLSIVDLDIPFSLIFAVG 1039 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~--tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~ 1039 (1335)
|+++|+++.++.++..+++.+.|.+.+++++.+++++++|.++.|||. |. |+|.+|+++|...|...+...+..+++
T Consensus 713 f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~ 791 (1228)
T KOG0055|consen 713 FLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQ 791 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 66 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh-HHHHHHHHccccchHHHHHHHHHcchHHHHhcccHH
Q 000713 1040 ATTNACSNLGVLAVVTWQVLFV---SIPVIFLAIRLQRYYFVT-AKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED 1115 (1335)
Q Consensus 1040 ~~~~~~~~l~vi~~~~~~~~~~---~ipl~~~~~~~q~~y~~t-srel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~ 1115 (1335)
++..++..+++.++.+|.+.++ +.|++++..+.+.+++.. +++.+.. ....-....|++++++||+||+.|+
T Consensus 792 ~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~----~~ea~~iA~eai~NIrTV~al~~e~ 867 (1228)
T KOG0055|consen 792 NIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKA----YEEASKIAIEAVSNIRTVAALCAEE 867 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----HHHHHHHHHHHHHhHHHHHHHhhHH
Confidence 9999999999999999999765 568888887887777754 4444431 1223356899999999999999999
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 000713 1116 RFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC----MVLLPPGTFTPGFIGMALSYGLSLNSSLVMS 1191 (1335)
Q Consensus 1116 ~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~----~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~ 1191 (1335)
+|++.+.+.++...+..+.. ..|-++-..+-.+++.+.-++. ..+..++.+++..+=..+.-..--...+...
T Consensus 868 ~~~~~y~~~l~~p~~~~~~~---~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~ 944 (1228)
T KOG0055|consen 868 KFMELYKEELEKPRKSSFKR---GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQA 944 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776543 2344444444444433333322 2333456666665433332222222344556
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCC-CccceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEE
Q 000713 1192 IQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNW-PVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1192 v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~W-P~~G~I~f~nv~~rY--~~~~~~VLk~is~~I~~GekVG 1268 (1335)
.....+.-....|+.+|++..+-+++-+...++. ..+ +.+|+|+|+||+|+| ||+. +||+|+|++|++||+||
T Consensus 945 ~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~---~~~~~~~G~I~~~~V~F~YPsRP~~-~Il~~l~l~i~~GqTvA 1020 (1228)
T KOG0055|consen 945 SSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSG---GKLPNVKGDIEFRNVSFAYPTRPDV-PVLNNLSLSIRAGQTVA 1020 (1228)
T ss_pred HhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCC---CccccceeEEEEeeeEeeCCCCCCc-hhhcCCcEEecCCCEEE
Confidence 6667788889999999999998655322111111 112 368999999999999 5666 49999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+||++||||||++++|.|+|||++|.|.|||.||.. |+++++|+|||+||++|||||
T Consensus 1021 LVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrEN 1083 (1228)
T KOG0055|consen 1021 LVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIREN 1083 (1228)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHH
Confidence 999999999999999999999999999999999986 678999999999999999998
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-98 Score=1010.14 Aligned_cols=1021 Identities=16% Similarity=0.168 Sum_probs=714.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
.+++...+.+++.++++.++.++..++..+.|++++.+++.+...+. . ..+++.+++..++..++...+.+...++
T Consensus 49 ~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 124 (1466)
T PTZ00265 49 LPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN-V---NDIIFSLVLIGIFQFILSFISSFCMDVV 124 (1466)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556678888899999999999999999999999997642211 1 1122223333333444444445566777
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAAL 457 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl 457 (1335)
+.++-..+...+|+|.++++..-.+....|++.|.++.|++.+.+.+. .+..+...++.++.++++++..--.-+++.+
T Consensus 125 ~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l 204 (1466)
T PTZ00265 125 TTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCIT 204 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 888888888889999999998777778889999999999999988653 4455555556666665555443222444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 458 VVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNG 537 (1335)
Q Consensus 458 ~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~ 537 (1335)
+++++++.+..++.+++++..++..+..++..+.+.|.++|||+||.|+-|+.+.++..+..+.-.+...+.....++..
T Consensus 205 ~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~ 284 (1466)
T PTZ00265 205 CVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHI 284 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777888888888888888889999999999999999999999999998887654443333333333333322
Q ss_pred HHHhHH--HHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 538 FLFWSS--PVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 538 ~~~~~~--p~lv~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
.+.... -..+.+++||.+.+..+ .++++.+++.+...-+...++..+...+..+.++.+|.+||.+.++.
T Consensus 285 ~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~ 364 (1466)
T PTZ00265 285 GMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINR 364 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 221111 12234456777766543 57888888766444444455556666788999999999999999986
Q ss_pred CCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEE
Q 000713 608 PELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI 687 (1335)
Q Consensus 608 ~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i 687 (1335)
++..+........ . ....|+++|++|+|+++++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 365 ~~~~~~~~~~~~~-~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I 442 (1466)
T PTZ00265 365 KPLVENNDDGKKL-K-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442 (1466)
T ss_pred CCCCCCCCCCccC-C-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence 4322111110100 1 1236999999999986444579999999999999999999999999999999999999999999
Q ss_pred EEc-C-------------eEEEEecCCcCCCCCHHHHhccCCC-------------------------------------
Q 000713 688 QVY-G-------------KTAYVSQTAWIQTGSIRENILFGSP------------------------------------- 716 (1335)
Q Consensus 688 ~v~-g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~------------------------------------- 716 (1335)
.++ | ++|||+|+|.+|++||+|||.+|..
T Consensus 443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1466)
T PTZ00265 443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDL 522 (1466)
T ss_pred EEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchh
Confidence 995 3 2799999999999999999998742
Q ss_pred ---------------------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 717 ---------------------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 717 ---------------------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
.++++..++++.+++.+.+..+|.|.+|.+|++|.+|||||||||+||||++++|+|+|
T Consensus 523 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILl 602 (1466)
T PTZ00265 523 NDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILI 602 (1466)
T ss_pred hhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 12244566777788889999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCC---------------------------
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDG--------------------------- 827 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G--------------------------- 827 (1335)
||||||+||+++++.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 603 LDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1466)
T PTZ00265 603 LDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNN 682 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccccccc
Confidence 9999999999999988876655443 589999999999999899999999986
Q ss_pred --------------------eEEEecChHHHHh-cchHHHHHHHHhhhhhcccc-c--c-cc--CCCc-C-CC--CCccc
Q 000713 828 --------------------EILRAAPYHQLLA-SSKEFQELVSAHKETAGSER-L--A-EV--TPSQ-K-SG--MPAKE 876 (1335)
Q Consensus 828 --------------------~i~~~g~~~~l~~-~~~~~~~l~~~~~~~~~~~~-~--~-~~--~~~~-~-~~--~~~~~ 876 (1335)
+|+|+|+++||++ .++.|..+++.+........ . . +. .... . .. ....+
T Consensus 683 ~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1466)
T PTZ00265 683 KDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDE 762 (1466)
T ss_pred cccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57888888865432211100 0 0 00 0000 0 00 00000
Q ss_pred ccc----ccc--c-cc-ccc--ccccchhhh------hhh--hcCCc--chHHHHHHHHhhhhhHHHHHH--HHHHHHHH
Q 000713 877 IKK----GHV--E-KQ-FEV--SKGDQLIKQ------EER--ETGDI--GLKPYIQYLNQNKGFLFFSIA--SLSHLTFV 934 (1335)
Q Consensus 877 ~~~----~~~--~-~~-~~~--~~~~~l~~~------e~r--~~G~v--~~~~y~~Y~~~~~g~~~~~~~--~~~~~~~~ 934 (1335)
... ... . .. ... ....+..++ +++ ..... .+..++++++.......+.++ ++...+..
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1466)
T PTZ00265 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYP 842 (1466)
T ss_pred ccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 0 00 000 000000000 000 00001 122334444332222221111 11111222
Q ss_pred HHHHHHhHhhh--ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--c
Q 000713 935 IGQILQNSWLA--ANVENPNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDS--T 1010 (1335)
Q Consensus 935 ~~~~~~~~wl~--w~~~~~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~--t 1010 (1335)
+.......++. +..+........|.+++++++++..++.+++.++....+.+...+++.++++++++.|++|||. +
T Consensus 843 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~ 922 (1466)
T PTZ00265 843 VFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH 922 (1466)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC
Confidence 22222222222 1111111123456777888888899999999999999999999999999999999999999996 8
Q ss_pred CchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHH--
Q 000713 1011 PLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFV--TAKELMRL-- 1086 (1335)
Q Consensus 1011 p~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~--tsrel~Rl-- 1086 (1335)
++|++++|+++|++.+...+...+..++..++.+++.++++++.+|.++++++|+.++.........+ ..++.++.
T Consensus 923 ~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1466)
T PTZ00265 923 APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEI 1002 (1466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999887776655443322211111 12222222
Q ss_pred -----------HccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1087 -----------NGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVIS 1155 (1335)
Q Consensus 1087 -----------~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~ 1155 (1335)
+....+...++++|+++|+.|||+|+.|++|.+++.+..+...+..........++..-.+.+..+..+
T Consensus 1003 ~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1082 (1466)
T PTZ00265 1003 NQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINS 1082 (1466)
T ss_pred cccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122244567899999999999999999999999999999887766554433332222222333222221
Q ss_pred -HHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCC-CCCCCc
Q 000713 1156 -SAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRP-PPNWPV 1233 (1335)
Q Consensus 1156 -~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p-~~~WP~ 1233 (1335)
+..+...+...|.++.|.+-.++.+.+.....+..+...+.++++...|.||+.+.++.++|.+...+...+ ++..+.
T Consensus 1083 ~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~ 1162 (1466)
T PTZ00265 1083 FAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDI 1162 (1466)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCC
Confidence 112222333367788887666655544444456667788899999999999999999876543211111111 011235
Q ss_pred cceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCC----------------------
Q 000713 1234 VGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP---------------------- 1290 (1335)
Q Consensus 1234 ~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~---------------------- 1290 (1335)
.|.|+|+||+|+|+.. ..+||+|+||+|+|||+|||||+||||||||+++|.|+|+|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~ 1242 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDY 1242 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccc
Confidence 6899999999999632 23699999999999999999999999999999999999999
Q ss_pred --------------------------------CCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1291 --------------------------------ARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1291 --------------------------------~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
++|+|+|||+||+. |+.+++|+|||+||+||||||
T Consensus 1243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreN 1315 (1466)
T PTZ00265 1243 QGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYEN 1315 (1466)
T ss_pred ccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHH
Confidence 69999999999975 578999999999999999998
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.3e-70 Score=687.92 Aligned_cols=548 Identities=23% Similarity=0.271 Sum_probs=434.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
+.++...+.+++.++++.++.++..++..+.|++++.+++.+..++......+.+++++++..++..++.....+...+.
T Consensus 11 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (588)
T PRK11174 11 RWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKA 90 (588)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888999999999999999999999999999997642211122223344455556666777766667777889
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAAL 457 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl 457 (1335)
+.++...+...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..++...+.+++++++++..-.+.+++.+
T Consensus 91 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l 170 (588)
T PRK11174 91 GQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILL 170 (588)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888889999999999999999998764 5666666655555555444332222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q 000713 458 VVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 458 ~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I----~~~R~~El~~l~~~~~~~ 533 (1335)
+++++.+.+...+.++.++.+++.++..+++.+.+.|.++|+++||.|+||+.+.+++ ++.|+.+.+..+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (588)
T PRK11174 171 GTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSS 250 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556677888889999999999999999999999999999999999887776 456666665555544444
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYFLNV--------PLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFL 605 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l~~~--------~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL 605 (1335)
.+..++... +.+ .++.++.+.+.|. .+++..+|.++.+...+..|+..++..+..+.++++|.+||.+++
T Consensus 251 ~~~~~~~~~-~~~-~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l 328 (588)
T PRK11174 251 AVLEFFASI-SIA-LVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFL 328 (588)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433332222 221 2223333333331 233445566666677788999999999999999999999999999
Q ss_pred cCCCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 606 EAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 606 ~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
+.++.++........ ......|+++|++|.|++ ++++|+|+||++++|+++||+||||||||||+++|+|++ |++|
T Consensus 329 ~~~~~~~~~~~~~~~-~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G 404 (588)
T PRK11174 329 ETPLAHPQQGEKELA-SNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG 404 (588)
T ss_pred cCCCcccCCCccccC-CCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence 876532211110000 002235999999987754 257999999999999999999999999999999999999 8999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+|.++| +++||||+|++|++||+|||.+|++ .++++++++++.|++.++++.+|+|++|.+||+|.
T Consensus 405 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 405 SLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAA 484 (588)
T ss_pred EEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCC
Confidence 999998 4899999999999999999999965 78899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
+||||||||++||||+++||+|+||||||||||+++++++.+.+ ....+++|+|+|||+++.++.+|+|++|++|+|++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l-~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e 563 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQ 563 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH-HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEee
Confidence 99999999999999999999999999999999999999998754 45567999999999999999999999999999999
Q ss_pred ecChHHHHhcchHHHHHHHHhh
Q 000713 832 AAPYHQLLASSKEFQELVSAHK 853 (1335)
Q Consensus 832 ~g~~~~l~~~~~~~~~l~~~~~ 853 (1335)
.|+++|++++++.|.+++..+.
T Consensus 564 ~G~~~eL~~~~~~y~~l~~~q~ 585 (588)
T PRK11174 564 QGDYAELSQAGGLFATLLAHRQ 585 (588)
T ss_pred cCCHHHHHhcchHHHHHHHHhh
Confidence 9999999998888888876543
No 10
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-68 Score=634.55 Aligned_cols=544 Identities=22% Similarity=0.290 Sum_probs=436.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAES-KAGF---KYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~-~~~~---~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
+.+.+..|+.+..+.++.++..+....-|.++.++++.+.. .+.. ......++++ .++.+++..-..+..+.
T Consensus 139 ~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l----~~~~a~~~~~r~~~~~~ 214 (716)
T KOG0058|consen 139 LGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGL----FLIGALANAIRGGLLQY 214 (716)
T ss_pred HHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999999999999998876 2211 1122233333 33344444334444444
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
.+.|+-..+...+|++.++..-+-.+++.+||+++.++.|++-+.+.+ .++.+.--..+|...++.++...=---+++.
T Consensus 215 a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~ 294 (716)
T KOG0058|consen 215 AGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVT 294 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 455555555556667777766666777889999999999999998865 5777777777888777766643211134455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++++.+..++++..+++.++..++..+-.+...|.|++||+||.|+-|+.-.++..+.=+.-++.-+|-....++.
T Consensus 295 ~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f 374 (716)
T KOG0058|consen 295 LIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF 374 (716)
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56666777788888999999999999999999999999999999999999998766666543222222223333322222
Q ss_pred hHH--HhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcc
Q 000713 537 GFL--FWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-PELQSM 613 (1335)
Q Consensus 537 ~~~--~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~-~e~~~~ 613 (1335)
... +...-..++++.+|.+...++.+|++...+.+..-..+..++..+....+.++++..|..|+.++++. |.++.+
T Consensus 375 ~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~ 454 (716)
T KOG0058|consen 375 FGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT 454 (716)
T ss_pred HhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC
Confidence 111 11122457778888898889999999999999888889999999999999999999999999999986 444433
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.. ..|. ...+.|+++|++|+||.+++.++|+|+||+|+|||.||+||||||||||+.++|+.+++|++|+|.+||
T Consensus 455 G~-~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~ 531 (716)
T KOG0058|consen 455 GT-LAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVP 531 (716)
T ss_pred Cc-cccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCee
Confidence 21 1221 155789999999999999889999999999999999999999999999999999999999999999999
Q ss_pred -----------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 -----------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 -----------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+||+|.|+|.+|++||+|||.+|.+ .++++.+++.+.+.-++.+..+|+|.+|.+||+|.+|||||||
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQ 611 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQ 611 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHH
Confidence 3799999999999999999999986 4566777888888899999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
||||||||++||.|+||||.|||||++.. ++.++.+....+++|||++.|+++.+++||+|+++++|+++|.|+++|++
T Consensus 612 RIAIARALlr~P~VLILDEATSALDaeSE-~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 612 RIAIARALLRNPRVLILDEATSALDAESE-YLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELL 690 (716)
T ss_pred HHHHHHHHhcCCCEEEEechhhhcchhhH-HHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHh
Confidence 99999999999999999999999999985 56677777778889999999999999999999999999999999999999
Q ss_pred hcc-hHHHHHHHHhh
Q 000713 840 ASS-KEFQELVSAHK 853 (1335)
Q Consensus 840 ~~~-~~~~~l~~~~~ 853 (1335)
+.. +.+.++++.+.
T Consensus 691 ~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 691 SKPNGLYAKLVQRQL 705 (716)
T ss_pred hCcccHHHHHHHHhc
Confidence 877 67888876543
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.8e-66 Score=663.40 Aligned_cols=542 Identities=21% Similarity=0.249 Sum_probs=443.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 299 SILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 299 sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
.+++..++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.++++++++.++..++.....+...++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (686)
T TIGR03797 125 DLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD-RSLLVQIALALLAAAVGAAAFQLAQSLAVLRL 203 (686)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566567788889999999999999999999999999997753322 22233445555556666666666666778889
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
+.++...+...+|+|.++++.....+.++|+++|.++ |++.+.+++.. +..+...++ +++++++++..-++.+++.
T Consensus 204 ~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~ 281 (686)
T TIGR03797 204 ETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIF-ALLNLGLMFYYSWKLALVA 281 (686)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988778889999999997 89999886542 233333343 3344455555445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++.+++...+.+..++..++.++..+++.+...|.++|+++||.++.|+.+.++.++.-++..+...+........
T Consensus 282 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (686)
T TIGR03797 282 VALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLL 361 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666667778888899999999999999999999999999999999999999888877765554444443333333332
Q ss_pred hHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 537 GFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 537 ~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
..+......+ +.++.+++|...++.+|.+.++++..++..+..|+..++..+..+.+++++++|+.++++.++..+..
T Consensus 362 ~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 441 (686)
T TIGR03797 362 TVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA 441 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC
Confidence 2222222222 33455677777788999999999999999999999999999999999999999999999865422211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--- 691 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--- 691 (1335)
. ..+ ....+.|+++|++|+|+++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|
T Consensus 442 ~-~~~--~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i 517 (686)
T TIGR03797 442 K-TDP--GKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL 517 (686)
T ss_pred c-CCC--CCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc
Confidence 1 111 1123469999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 ----------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++||||+|++|++|++|||.++.+.++++..++++.+++.++++.+|.|.+|.+||+|.+||||||||+
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 3799999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+||||++++|++++||||||+||+++++++.+.+.+. ++|+|+|||+++.++.+|+|++|++|+|++.|+++|++++
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999998876542 6899999999999999999999999999999999999988
Q ss_pred chHHHHHHH
Q 000713 842 SKEFQELVS 850 (1335)
Q Consensus 842 ~~~~~~l~~ 850 (1335)
++.|.++++
T Consensus 675 ~~~y~~l~~ 683 (686)
T TIGR03797 675 EGLFAQLAR 683 (686)
T ss_pred CcHHHHHHH
Confidence 888888765
No 12
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.9e-66 Score=667.85 Aligned_cols=544 Identities=19% Similarity=0.263 Sum_probs=450.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIG 379 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 379 (1335)
.++..++.+++.++...+..++..++..+.|++++.+++.+-.... ....+.++++++++.++..++.....+...+++
T Consensus 144 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (710)
T TIGR03796 144 ALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR-QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQ 222 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777788888889999999999999999999997654332 222334455555566666676666677788899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
.++...+...+|+|.++++.....+.++|+++|.++.| +++.++.. .+..+....+.+++.+++++..-++.+++.++
T Consensus 223 ~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~ 301 (710)
T TIGR03796 223 IKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIA 301 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887888999999999988 67887653 34444455555556666665554555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~ 538 (1335)
.+++.+.+...+.+...+..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++.++++.+...+.....+....
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (710)
T TIGR03796 302 FAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGV 381 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777888888899999999999999999999999999999999999999999998888777766655554444333
Q ss_pred HHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-
Q 000713 539 LFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI- 615 (1335)
Q Consensus 539 ~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~- 615 (1335)
+...... .+.++.++++.+.++.+|.+.+++++.++..+..|+..++..+..+.+++++++||.++++.++..+...
T Consensus 382 ~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~ 461 (710)
T TIGR03796 382 LPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEE 461 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 2222222 2345667788788889999999999999999999999999999999999999999999998754322111
Q ss_pred ---cccCCC-CCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC
Q 000713 616 ---RQKGNI-ENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691 (1335)
Q Consensus 616 ---~~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g 691 (1335)
...... ...++.|+++|++|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 540 (710)
T TIGR03796 462 EAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDG 540 (710)
T ss_pred cccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 000000 1124579999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred -------------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -------------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -------------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+++||||+|+++++|++|||.++.+ .++++..++++.+++.+++..+|.|.+|.+||+|.+|||||
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ 620 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ 620 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence 4799999999999999999998764 67888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||++||||++++|+|+|||||||+||+++++++++.+.+ .++|+|+|||+++.++.||+|++|++|+|++.|+++|
T Consensus 621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999987754 5899999999999999999999999999999999999
Q ss_pred HHhcchHHHHHH
Q 000713 838 LLASSKEFQELV 849 (1335)
Q Consensus 838 l~~~~~~~~~l~ 849 (1335)
++++++.|.+++
T Consensus 698 Ll~~~~~y~~l~ 709 (710)
T TIGR03796 698 LWAVGGAYARLI 709 (710)
T ss_pred HHHcCCcHHHHh
Confidence 998887777664
No 13
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.3e-66 Score=660.11 Aligned_cols=539 Identities=21% Similarity=0.266 Sum_probs=420.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+++.+++.+....++.++..++..+.|++++.+++.+..+..... -...+..+++..++..++.....+...+.+.++.
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 233 (711)
T TIGR00958 155 LSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPA-LASAIFFMCLLSIASSVSAGLRGGSFNYTMARIN 233 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888889999999999999999999998864332111 0011111112222222222222222333455555
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++.+....++..+|+++|.++.|++++.+.. ..+..+....+++++++++++..-...+++.++.+++
T Consensus 234 ~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l 313 (711)
T TIGR00958 234 LRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPL 313 (711)
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556677888999988877778899999999999999998765 4566666666777777666655433344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+...+.+..++..++.++..++..+...|.++|+++||.|++|+.+.+++++..++-.+..++.....+....+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (711)
T TIGR00958 314 VFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSV 393 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677778888888888999999999999999999999999999999877776654443332222222222221111111
Q ss_pred --HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCC
Q 000713 543 --SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1335)
Q Consensus 543 --~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~ 620 (1335)
.-..+.++.++.+.+.++.+|++.+.+.+.+...+..|+..++..+..+.+++++.+||.++++.++..+......+
T Consensus 394 ~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~- 472 (711)
T TIGR00958 394 LGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAP- 472 (711)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCC-
Confidence 11223445667777778899999999999999999999999999999999999999999999987543221111111
Q ss_pred CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 621 ~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
.+..+.|+++|++|+|++++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 473 -~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 473 -LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred -CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 1133569999999999865456899999999999999999999999999999999999999999999998
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
+++||||+|++|++|+||||.+|.+ .++++..++++.+++.++++.+|+|.+|.+||+|.+||||||||++||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 4799999999999999999999965 56778899999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
++++|+|+|||||||+||+++.+.+.+ ....+++|+|+|||+++.+..+|+|++|++|+|++.|+++|++++++.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~---~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE---SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH---hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchH
Confidence 999999999999999999999988877 22347899999999999999999999999999999999999998776665
Q ss_pred HH
Q 000713 847 EL 848 (1335)
Q Consensus 847 ~l 848 (1335)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
No 14
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.7e-65 Score=639.44 Aligned_cols=545 Identities=28% Similarity=0.371 Sum_probs=460.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 297 QPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 297 ~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
+.+.++..++-+++.+.-..+..++..++..+.|++.+.++|.+-.... ...-..+++++.+..+++.+...--.|...
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~-~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~ 219 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS-RSTLTVLAIGLLLAALFEALLRLLRTYLIA 219 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778889988889999999999999999999999998864432 233456666777777788777666667778
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLC---IALIILFHAVGLAT 453 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~---lal~lL~~~lG~a~ 453 (1335)
.++.|+...+...+|++.|+++....+++++|++++.+ .|.++|.++...- +.+.++.+. +.+.+++..-+.-+
T Consensus 220 ~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~--~l~~iiD~~~~~i~l~vm~~ys~~L~ 296 (709)
T COG2274 220 HLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGS--ILTLIIDLLFALIFLAVMFLYSWKLT 296 (709)
T ss_pred HHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999997 6899999886431 223333333 33344455556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
+++++.+++.+.+..++.+..++..++.++...++-+...|.++||++||..+-|+.|..+.++.=.+..+.-.+.....
T Consensus 297 li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 297 LIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 77888888888888999999999999999999999999999999999999999999999888876666666555555544
Q ss_pred HHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000713 534 AYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611 (1335)
Q Consensus 534 a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~ 611 (1335)
.....+......+ +.+++||++..+++.+|.|..+.+..+......|+..+.+....+.+++++.+|+.+.++.|..+
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 4443332222222 55678999999999999999999999999999999999999999999999999999999876532
Q ss_pred cccc--cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 612 SMNI--RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 612 ~~~~--~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
+... ...+ ..++.|+++|++|+|+.++ .++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+
T Consensus 457 ~~~~~~~~~~---~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~ 532 (709)
T COG2274 457 EGDKTLIHLP---KLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILL 532 (709)
T ss_pred cccccccccc---ccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 2211 1122 1457899999999998754 37999999999999999999999999999999999999999999999
Q ss_pred cC-------------eEEEEecCCcCCCCCHHHHhccCCCCCh-HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 690 YG-------------KTAYVSQTAWIQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 690 ~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~-~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
|| +++||+|++.+|++||+|||.++.|... ++..++++..+.++++..+|.|.+|.+||+|.+|||
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSG 612 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSG 612 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCH
Confidence 99 4799999999999999999999988654 666777777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||++||||++++|+|+||||||||||+++.+.+.+++.+ ...|+|+|+|||+++.++.||+|+||++|+|+++|++
T Consensus 613 GQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~-~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~ 691 (709)
T COG2274 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ-ILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSH 691 (709)
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH-HhcCCeEEEEEccchHhhhccEEEEccCCceeccCCH
Confidence 999999999999999999999999999999999999887654 5568999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHH
Q 000713 836 HQLLASSKEFQELVS 850 (1335)
Q Consensus 836 ~~l~~~~~~~~~l~~ 850 (1335)
+|+++.++.+..++.
T Consensus 692 ~ell~~~g~y~~l~~ 706 (709)
T COG2274 692 EELLAQGGLYARLYQ 706 (709)
T ss_pred HHHHHhcChHHHHHh
Confidence 999998888877764
No 15
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.5e-65 Score=655.50 Aligned_cols=537 Identities=24% Similarity=0.333 Sum_probs=442.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
.+.++..++.+++.+....++.++..++.++.|++++.+++.+-.... ....+.+++++++..++..+......+...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA-FETLWVLAIGVALAIVFDFVLKTLRSYFLDV 213 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888889889999999999999999999999997753322 2223334444545555566665556667788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIALIILFHAVGLATIA 455 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal~lL~~~lG~a~l~ 455 (1335)
++.++...+...+|+|.++++... .+.++|++++.+ +|++.+.++... +..+...+. +++.+++++..-++.+++
T Consensus 214 ~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 214 AGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPF-ALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHH
Confidence 999999999999999999998765 567899999999 799999987542 233333443 333444444444556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 456 ALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY 535 (1335)
Q Consensus 456 gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~ 535 (1335)
.++++++.+.+..++.+..++..++.++..+++.+.+.|.++|+++||.+++|+.+.++.++..++..+...+.......
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNL 370 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888899999999999999999999999999999999999999999999988877776666666555544
Q ss_pred HhHHHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 536 NGFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 536 ~~~~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
...+...... .+.++.++++.+.++.+|.+..+.++.++..+..|+..++..+..+.+++++++|+.++++.++..+.
T Consensus 371 ~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~ 450 (694)
T TIGR03375 371 ATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPE 450 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4333222222 23345677888888899999999999999999999999999999999999999999999987643221
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.....+. ....+.|+++|++|+|+++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 451 ~~~~~~~-~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 451 GTRFLHR-PRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCC-CCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 1110100 1123569999999999753 35799999999999999999999999999999999999999999999998
Q ss_pred -----------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 -----------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 -----------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++||||+|++|++||+|||.++.+ .++++..++++.+++.++++.+|.|.+|.+||+|.+|||||||
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQ 608 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHH
Confidence 4799999999999999999999986 7888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|++++||||||+||+++++++.+.+. ...+++|+|+|||+++.++.||+|++|++|++++.|+++|++
T Consensus 609 RlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~-~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 609 AVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK-RWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999999999999999999999999999987654 445689999999999999999999999999999999999997
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
++
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 54
No 16
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.1e-64 Score=635.66 Aligned_cols=543 Identities=18% Similarity=0.232 Sum_probs=434.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+..+++.+++.++...+..++..++..+.|++++.+++.+.+..... ....++..+++..++..++.....+...+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 94 (582)
T PRK11176 16 LWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRS-VLKWMPLVVIGLMILRGITSFISSYCISWVSG 94 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777778888888889999999998776432211 11122222333444445554444556677888
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v 459 (1335)
++...+...+|+|.++++.....+.+.|+++|.++.|++++.+.. ..+..+...++.+++.+++++..-++.+++.+++
T Consensus 95 ~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~ 174 (582)
T PRK11176 95 KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVI 174 (582)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999988888999999999999999998764 3455566666777777766665544445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000713 460 ITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR----KAY 535 (1335)
Q Consensus 460 ~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~----~a~ 535 (1335)
+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++.-++-.+...+.... ...
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (582)
T PRK11176 175 APIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPI 254 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677888888889999999999999999999999999999999888777765433333332222222 222
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000713 536 NGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1335)
Q Consensus 536 ~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~ 615 (1335)
..++... ..+.++.++.+....+.++++.+..++.++..+..|+..+...+..+.+++.+++||.++++.++.++...
T Consensus 255 ~~~~~~~--~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 332 (582)
T PRK11176 255 IQLIASL--ALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGK 332 (582)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence 2222211 22344556667667788999999988988988999999999999999999999999999998654322111
Q ss_pred cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---
Q 000713 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--- 692 (1335)
Q Consensus 616 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--- 692 (1335)
... .+....|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 ~~~---~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~ 408 (582)
T PRK11176 333 RVI---ERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLR 408 (582)
T ss_pred cCC---CCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhh
Confidence 111 1123469999999999753 357999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCCCHHHHhccCCC--CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 ----------TAYVSQTAWIQTGSIRENILFGSP--MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 ----------~ayv~Q~~~i~~~Tv~eNIlfg~~--~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|+||+|.+|++|++|||.+|.+ .++++.+++++.+++.++++.+|+|.+|.+|++|.+||||||||
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQR 488 (582)
T PRK11176 409 DYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488 (582)
T ss_pred hcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHH
Confidence 699999999999999999999853 68889999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||++++|++++|||||||||+++.+++++.+.+ ..+++|+|+|||+++.++.||+|++|++|+|++.|+++++++
T Consensus 489 i~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~-~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999999999999876654 456899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 000713 841 SSKEFQELVSA 851 (1335)
Q Consensus 841 ~~~~~~~l~~~ 851 (1335)
.++.|++++..
T Consensus 568 ~~~~y~~l~~~ 578 (582)
T PRK11176 568 QNGVYAQLHKM 578 (582)
T ss_pred CCChHHHHHHH
Confidence 88888888754
No 17
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.5e-64 Score=649.56 Aligned_cols=539 Identities=23% Similarity=0.271 Sum_probs=432.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+...++.+++.++...++.++..++..+.|++++.+++.+-.... ...-+.+++++++..++..++.....+...+++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (708)
T TIGR01193 147 FIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM-MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQ 225 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556678888888888999999999999999999987654321 1222333444444555566655555667778899
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF--HQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~--h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
++...+...+|+|.++++....++.++|+++|.++ |++++.++.... ..+...+. +++.+.+++..-++.+++.++
T Consensus 226 ~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~li~l~ 303 (708)
T TIGR01193 226 RLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWI-LVIVGLFLVRQNMLLFLLSLL 303 (708)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999998888889999999998 999998875422 22223333 333333444433334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAV----QLRKA 534 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~----~~~~a 534 (1335)
++++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+. ....+
T Consensus 304 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (708)
T TIGR01193 304 SIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666778888899999999999999999999999999999999999988888766544333332222 22222
Q ss_pred HHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 535 YNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 535 ~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
+..++.... .+.++.+|++.+..+.+|.+.++++..+...+..|+..+...+..+.+++++.+||.++++.++..+..
T Consensus 384 ~~~~~~~~~--~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 461 (708)
T TIGR01193 384 IKAVTKLIL--NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINK 461 (708)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 222222222 244567788888889999999999999999999999999999999999999999999999765432211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--- 691 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--- 691 (1335)
....+. ....+.|+++|++|+|++ ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 462 ~~~~~~-~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i 538 (708)
T TIGR01193 462 KKRTEL-NNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL 538 (708)
T ss_pred ccccCC-CCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH
Confidence 110111 113457999999999964 35799999999999999999999999999999999999999999999998
Q ss_pred ----------eEEEEecCCcCCCCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----------KTAYVSQTAWIQTGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++||||+|++|++||+|||.++. ..++++..++++.+++.+++..+|.|.+|.+||+|.+|||||||
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQ 618 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQ 618 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHH
Confidence 379999999999999999999983 46778889999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|+++|||||||+||+++.+++.+.+.+ .+++|+|+|||+++.+..||+|++|++|++++.|+++|++
T Consensus 619 RialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~--~~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~ 696 (708)
T TIGR01193 619 RIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN--LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL 696 (708)
T ss_pred HHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH--hcCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999887764 3689999999999999999999999999999999999999
Q ss_pred hcchHHHHHH
Q 000713 840 ASSKEFQELV 849 (1335)
Q Consensus 840 ~~~~~~~~l~ 849 (1335)
+..+.|.+++
T Consensus 697 ~~~~~y~~l~ 706 (708)
T TIGR01193 697 DRNGFYASLI 706 (708)
T ss_pred hcCCcHHHHh
Confidence 8877777765
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.6e-64 Score=633.90 Aligned_cols=544 Identities=19% Similarity=0.282 Sum_probs=444.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLK 381 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~r 381 (1335)
..+++.+++.++++.++.++..++....|++++.+++..-.... ...-+.+++.+++..++..+......+...+.+.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 84 (571)
T TIGR02203 6 WSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD-RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNK 84 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999998886543221 11122223333344445555544455667788888
Q ss_pred HHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 382 VRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVI 460 (1335)
Q Consensus 382 iR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~ 460 (1335)
+...+...+|+|.++.+.....+.+.|+++|.++.|++++.++.. .+..++...+.+++++++++..-++.+++.++++
T Consensus 85 ~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~ 164 (571)
T TIGR02203 85 VVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVML 164 (571)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888899999999999998888888999999999999999998654 4555666666666666666654444555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000713 461 TITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLF 540 (1335)
Q Consensus 461 vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~ 540 (1335)
++.+.+...+.+..++..++..+..+++.+..+|.++|+++||.++.|+.+.++.++..++..+...+.....+....+.
T Consensus 165 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (571)
T TIGR02203 165 PVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPIT 244 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888889999999999999999999999999999999999999888877766655554444433333333222
Q ss_pred hHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 541 WSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 541 ~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
..... .+.++.++.+....+.+|++.+++++.++..+..|+..+...+..+.+++++.+|+.++++.++..+.... .
T Consensus 245 ~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~ 323 (571)
T TIGR02203 245 QLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTR-A 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-C
Confidence 22221 23445667777778899999999999999999999999999999999999999999999976543222111 1
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
. ...+..|+++|++|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 324 ~--~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~ 400 (571)
T TIGR02203 324 I--ERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYT 400 (571)
T ss_pred C--CCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcC
Confidence 1 1123469999999999754 35799999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+++|+||+|++|++|++|||.++. +.++++.+++++.|++.+++..+|+|.+|.+|++|.+||||||||++|
T Consensus 401 ~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaL 480 (571)
T TIGR02203 401 LASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAI 480 (571)
T ss_pred HHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHH
Confidence 379999999999999999999986 478889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
|||++++|+|+|||||||+||+++++++.+.+.+ ..+++|+|+|||+.+.++.||+|++|++|++++.|+++++++.++
T Consensus 481 ARall~~~~illLDEpts~LD~~~~~~i~~~L~~-~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~ 559 (571)
T TIGR02203 481 ARALLKDAPILILDEATSALDNESERLVQAALER-LMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNG 559 (571)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH-HhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCC
Confidence 9999999999999999999999999999876654 457899999999999999999999999999999999999998777
Q ss_pred HHHHHHHH
Q 000713 844 EFQELVSA 851 (1335)
Q Consensus 844 ~~~~l~~~ 851 (1335)
.+.++.++
T Consensus 560 ~~~~~~~~ 567 (571)
T TIGR02203 560 LYAQLHNM 567 (571)
T ss_pred HHHHHHHH
Confidence 77776543
No 19
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-63 Score=627.06 Aligned_cols=549 Identities=21% Similarity=0.271 Sum_probs=430.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIG 379 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g 379 (1335)
.++.+++.+++.+.+..++.++..++..+.|+++..+++.+-....... -..+++.+++..++..+......+...+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL-LNRYFAFLLVVALVLALGTAARFYLVTWLG 86 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777888888889999999999999999999997432221111 112222233333344444455566778899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
.++...+...+|+|.++++.....+.+.|+++|.+++|++++.++.. .+..+....+.+++++++++..-.+.+++.++
T Consensus 87 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 166 (576)
T TIGR02204 87 ERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLL 166 (576)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999988777778899999999999999988753 34444444445555544443332222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~ 538 (1335)
.+++.+.+...+.+..++..++.++..+++.+...|.++|+++||.+++|+.+.++.++..++..+...+..........
T Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (576)
T TIGR02204 167 AVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTA 246 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444556788888899999999999999999999999999999999998888877655444443333322222221
Q ss_pred HHh--HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Q 000713 539 LFW--SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIR 616 (1335)
Q Consensus 539 ~~~--~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~ 616 (1335)
+.. ..-..+..+.++.+.+..+.+|++.+++...+...+..|+..++..+..+.+++++++||.++++.++..+....
T Consensus 247 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 326 (576)
T TIGR02204 247 IVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAH 326 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCC
Confidence 111 112234445567777778899999999999999999999999999999999999999999999986542111110
Q ss_pred ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----
Q 000713 617 QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----- 691 (1335)
Q Consensus 617 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----- 691 (1335)
......+....|+++|++|+|+++.++++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 327 ~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 327 PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 000001123469999999999764336799999999999999999999999999999999999999999999998
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.++++.+|.|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~ 486 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIA 486 (576)
T ss_pred cCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHH
Confidence 4799999999999999999999875 4677888999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||++++|+++|||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++.
T Consensus 487 laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~-~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~ 565 (576)
T TIGR02204 487 IARAILKDAPILLLDEATSALDAESEQLVQQALET-LMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKG 565 (576)
T ss_pred HHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcC
Confidence 99999999999999999999999999888876654 45789999999999999999999999999999999999999888
Q ss_pred hHHHHHHH
Q 000713 843 KEFQELVS 850 (1335)
Q Consensus 843 ~~~~~l~~ 850 (1335)
+.|.++..
T Consensus 566 ~~~~~l~~ 573 (576)
T TIGR02204 566 GLYARLAR 573 (576)
T ss_pred ChHHHHHh
Confidence 77777654
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.9e-63 Score=622.65 Aligned_cols=542 Identities=19% Similarity=0.249 Sum_probs=423.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 302 RTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEG-YLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
..+.+.+++.++...++.++..++..+.|+++..+++.+.......... ..+++++++..++..++.....+...+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (592)
T PRK10790 15 LAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAV 94 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888999999999999999999999764332211111 222333444445555555555666778888
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGLATIAALVV 459 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~-h~~w~~plqi~lal~lL~~~lG~a~l~gl~v 459 (1335)
++...+...+|+|.++++.....+.++|+++|.++.|++++.+..... ..+....+.+++++.+++..-.+.+++.+++
T Consensus 95 ~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~ 174 (592)
T PRK10790 95 GVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMI 174 (592)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888888899999999999999998875433 3333333333333333332222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000713 460 ITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAY---- 535 (1335)
Q Consensus 460 ~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~---- 535 (1335)
+++.+.+.....+..++..++..+..++..+..+|.++|+++||.|+.|+.+.++..+..++..+...+.....+.
T Consensus 175 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (592)
T PRK10790 175 FPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRP 254 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555667777778888888888899999999999999999999999988887655433332221111111
Q ss_pred HhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Q 000713 536 NGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNI 615 (1335)
Q Consensus 536 ~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~ 615 (1335)
...+......++.++ .+.+ ...+.++.+.++.++.++..+..|+..++..+..+.++++|.+||.++++.++.+....
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~ 332 (592)
T PRK10790 255 LLSLFSALILCGLLM-LFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND 332 (592)
T ss_pred HHHHHHHHHHHHHHH-HHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 111111111111112 2223 34677999999999999999999999999999999999999999999997654322111
Q ss_pred cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---
Q 000713 616 RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--- 692 (1335)
Q Consensus 616 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--- 692 (1335)
..+ . ..+.|+++|++|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 333 -~~~--~-~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~ 406 (592)
T PRK10790 333 -DRP--L-QSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLS 406 (592)
T ss_pred -ccC--C-CCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhh
Confidence 111 1 2346999999999974 257999999999999999999999999999999999999999999999983
Q ss_pred ----------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ----------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ----------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++||||+|.+|++|++|||.++.+.++++.+++++++++.++++.+|.|.+|.+|++|.+||||||||++
T Consensus 407 ~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRia 486 (592)
T PRK10790 407 SLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLA 486 (592)
T ss_pred hCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHH
Confidence 7999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||++++|+|+|||||||+||+++.+++.+.+.+ ..+++|+|+|||+++.++.+|+|++|++|++++.|+++|+++.+
T Consensus 487 lARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~-~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~ 565 (592)
T PRK10790 487 LARVLVQTPQILILDEATANIDSGTEQAIQQALAA-VREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565 (592)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH-HhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999876643 44689999999999999999999999999999999999999988
Q ss_pred hHHHHHHHHh
Q 000713 843 KEFQELVSAH 852 (1335)
Q Consensus 843 ~~~~~l~~~~ 852 (1335)
+.|.++.+..
T Consensus 566 ~~y~~l~~~~ 575 (592)
T PRK10790 566 GRYWQMYQLQ 575 (592)
T ss_pred CHHHHHHHHH
Confidence 9999887654
No 21
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.3e-62 Score=616.22 Aligned_cols=528 Identities=23% Similarity=0.289 Sum_probs=416.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 000713 320 LIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSN 399 (1335)
Q Consensus 320 l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~ 399 (1335)
++..++..+.|++++.+++.+..........+.+++.++++.++..++.....+...+.+.++...+...+|+|.++++.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 44556667889999999997754321122233344445455555555554445566678889999999999999999998
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 400 AARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGL-ATIAALVVITITVLCNTPLAKLQHKF 477 (1335)
Q Consensus 400 ~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~-a~l~gl~v~vl~~~~~~~~~~~~~~~ 477 (1335)
....++.+|+++|.+++|++++.+.. ..+..++..++.+++++++++..++| .+++.++++++.+.+...+.+..++.
T Consensus 85 ~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 85 EFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred HHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999998664 34556666656555555555444554 34444445555555666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHH--HHHHHHHHHHH
Q 000713 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSP--VLVSTATFGAC 555 (1335)
Q Consensus 478 q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p--~lv~~~tF~~~ 555 (1335)
.++..+..++..+...|.++|+++||.|++|+.+.++..+.-++..+...+.....+....+..... ..+.++.++.+
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888889999999999999999999998777765433222222222222222111111111 12334456777
Q ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEE
Q 000713 556 YFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASF 635 (1335)
Q Consensus 556 ~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~ 635 (1335)
.+.++.+|.+.+++++.+...+..|+..++..+..+.+++++.+||.++++.++..+......+ . .+..|+++|++|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~--~-~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVP--E-GRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCC--C-CCCcEEEEEEEE
Confidence 7778899999999999999999999999999999999999999999999976542211111111 1 234699999999
Q ss_pred EecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcC
Q 000713 636 SWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWI 702 (1335)
Q Consensus 636 ~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i 702 (1335)
+|+++ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|+|++
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99753 357999999999999999999999999999999999999999999999873 6999999999
Q ss_pred CCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 703 QTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
+++|++|||.++.+ .++++.+++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+++|||||||
T Consensus 401 f~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts 480 (569)
T PRK10789 401 FSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALS 480 (569)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccc
Confidence 99999999999864 67778889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHh
Q 000713 782 AVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 852 (1335)
+||+++.+++.+.+.+ ..+++|+|++||+++.++.+|+|++|++|++++.|++++++++.+.+.+++..+
T Consensus 481 ~LD~~~~~~i~~~l~~-~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~ 550 (569)
T PRK10789 481 AVDGRTEHQILHNLRQ-WGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550 (569)
T ss_pred cCCHHHHHHHHHHHHH-HhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHh
Confidence 9999999999887654 457899999999999999999999999999999999999998888888877653
No 22
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6e-62 Score=613.39 Aligned_cols=539 Identities=21% Similarity=0.264 Sum_probs=420.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+++.+++.+++..++.++..++..+.|+++..+++.+..+. .... +++.+.+..++..+......+...++..++|
T Consensus 13 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK13657 13 YLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-DIFP---LLAAWAGFGLFNIIAGVLVARHADRLAHRRR 88 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999999999999999999999776432 1111 1111111222222222223445677888889
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....+.+.|++++.++.|++.+.+... .+..+....+..++.+++++..-.+.+++.++++++
T Consensus 89 ~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l 168 (588)
T PRK13657 89 LAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIV 168 (588)
T ss_pred HHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999876532 333322232222233322222222233334444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEIL----RNVEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~----R~~El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.+..++.+++.++..++..+...|.++|+++||.|+.|+.+.+++.+. ++.+.+..+..........+
T Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (588)
T PRK13657 169 YTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRA 248 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888899999999999999999999999999999999999877666543 33333333333222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+. .-..+.++.++.|.+..+.+|.+.+++++.++..+..|+..+...+..+.+++.+.+|+.++++.++..+......
T Consensus 249 ~~--~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 326 (588)
T PRK13657 249 AS--TITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAI 326 (588)
T ss_pred HH--HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCC
Confidence 11 1223455677888888889999999999999999999999999999999999999999999997643221111100
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
+. ...+..|+++|++|+|+++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~ 403 (588)
T PRK13657 327 DL-GRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVT 403 (588)
T ss_pred Cc-CCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCC
Confidence 11 1123469999999999742 4699999999999999999999999999999999999999999999998
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.+..+|.|.+|.+|++|.+||||||||++||
T Consensus 404 ~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialA 483 (588)
T PRK13657 404 RASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIA 483 (588)
T ss_pred HHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHH
Confidence 4799999999999999999999864 567778889999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~ 844 (1335)
||++++|++++||||||+||+++++.+++.+.. ..+++|+|+|||+++.++.+|+|++|++|++.+.|+++++++..+.
T Consensus 484 Rall~~~~iliLDEpts~LD~~t~~~i~~~l~~-~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~ 562 (588)
T PRK13657 484 RALLKDPPILILDEATSALDVETEAKVKAALDE-LMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGR 562 (588)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH-HhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCCh
Confidence 999999999999999999999999999876654 3468999999999999999999999999999999999999988888
Q ss_pred HHHHHHHh
Q 000713 845 FQELVSAH 852 (1335)
Q Consensus 845 ~~~l~~~~ 852 (1335)
+.+++...
T Consensus 563 y~~l~~~~ 570 (588)
T PRK13657 563 FAALLRAQ 570 (588)
T ss_pred HHHHHHHh
Confidence 88887643
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.7e-62 Score=610.45 Aligned_cols=539 Identities=21% Similarity=0.283 Sum_probs=413.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAE-SKAG--FKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGL 380 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~--~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ 380 (1335)
+.+.+++.++++.++.++..++....|.+++.+++..- .+.. ........++++++..++..++.....+...+.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (574)
T PRK11160 10 LYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSHDATF 89 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888899999999999999999999998642 2211 01111112223333444555555555567778899
Q ss_pred HHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 000713 381 KVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILF---HAVGLATIAA 456 (1335)
Q Consensus 381 riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~---~~lG~a~l~g 456 (1335)
++...+...+|+|.++++....++..+|++++.+++|++++.++.. .+..+....+.+++++++++ +.+++..+++
T Consensus 90 ~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 169 (574)
T PRK11160 90 RVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTLGGI 169 (574)
T ss_pred HHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888999999999999999998764 34444444555544444443 3333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
+.+ +.+.+...+.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++++..++-.+...+.....+..
T Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (574)
T PRK11160 170 LLL--LLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLS 247 (574)
T ss_pred HHH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 122234556677788888889999999999999999999999999999888887765444333333333222222
Q ss_pred hHHHhHHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 537 GFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRL-VQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 537 ~~~~~~~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~-L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
..+..... ..+.++.++.+. .++.++.+..++++.+..+ ...|+..++..+..+.++++|.+||.++++.++..++
T Consensus 248 ~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~ 326 (574)
T PRK11160 248 QALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF 326 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 22211111 122334455555 4667888887766655433 3468888899999999999999999999986542111
Q ss_pred cccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-
Q 000713 614 NIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK- 692 (1335)
Q Consensus 614 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~- 692 (1335)
.....+. . ....|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 327 ~~~~~~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~ 403 (574)
T PRK11160 327 PTTSTAA-A-DQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP 403 (574)
T ss_pred CcccCCC-C-CCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 1000111 1 23569999999999753 247999999999999999999999999999999999999999999999983
Q ss_pred ------------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ------------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ------------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++||||+|++|++|++|||.++.+ .++++..++++.+++.++++. |+|.+|.+||+|.+|||||||
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrq 482 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQR 482 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHH
Confidence 799999999999999999999875 577788999999999999999 999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
|++||||++++|++++||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.+|+|++|++|++++.|+++|++
T Consensus 483 RialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~-~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 483 RLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE-HAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELL 561 (574)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH-HcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHH
Confidence 99999999999999999999999999999998876544 45789999999999999999999999999999999999999
Q ss_pred hcchHHHHHHH
Q 000713 840 ASSKEFQELVS 850 (1335)
Q Consensus 840 ~~~~~~~~l~~ 850 (1335)
++++.|.++++
T Consensus 562 ~~~g~y~~l~~ 572 (574)
T PRK11160 562 AQQGRYYQLKQ 572 (574)
T ss_pred hcCcHHHHHHh
Confidence 98888887754
No 24
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.6e-62 Score=610.90 Aligned_cols=520 Identities=22% Similarity=0.248 Sum_probs=413.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 307 CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLL 386 (1335)
Q Consensus 307 ~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L 386 (1335)
.+++.++...++.++..++..+.|++++.+++.+-.... ....+.+++.+++..++..++.....+...+++.++...+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS-VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888999999999999999999996643221 1223334555555666667776667778888999999999
Q ss_pred HHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 000713 387 TAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW--FHQIWTTSVQLCIAL--IILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 387 ~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~--~h~~w~~plqi~lal--~lL~~~lG~a~l~gl~v~vl 462 (1335)
...+|+|.++++.. ..+...+.+.+|++++.+.... +..+...++.++..+ +.+.+.+++.++++ +++
T Consensus 82 r~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~---~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGG---AVV 153 (544)
T ss_pred HHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHH
Confidence 99999999998762 2345678889999999886543 333444444333322 22223334333333 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+.....+..++..++.++..+++.+.++|.++|+++||.|++|+.+.+++++..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777788888999999999999999999999999999999999988876665555444444433333222222
Q ss_pred HH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCC
Q 000713 543 SP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGN 620 (1335)
Q Consensus 543 ~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~ 620 (1335)
.. ..+.++.++.+...++.+|++.+++++.++..+..|+..++..+..+.+++++.+||.++++.++..++.. ..+
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~- 311 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLP- 311 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCC-
Confidence 11 22344567778778889999999999999999999999999999999999999999999997654322111 111
Q ss_pred CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 621 IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 621 ~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
. .+..|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 312 -~-~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 312 -E-PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred -C-CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 1 23469999999999743 35799999999999999999999999999999999999999999999988
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|+||+|+++++|++|||.++.+ .++++..++++.+++.+.++.+|+|.+|.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 3799999999999999999986654 67788888999999999999999999999999999999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++++|+++|||||||+||+++++.+.+.+.+...+++|+|++||+++.+..||+|++|++|++++.|+++++.+
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999998766554446899999999999888899999999999999999998864
No 25
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.1e-62 Score=609.00 Aligned_cols=505 Identities=21% Similarity=0.249 Sum_probs=387.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
+.+.+++.++...++.++..++..+.|++++.+++.+........ -+.+.+++++..++..+......+...+.+.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (529)
T TIGR02868 7 LLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPPVLY-LSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSL 85 (529)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677778888888899999999999999999987653321111 1111111212333344444444455667888889
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....+.++|+++|.++.|++++.+.... +..+....+.+++++++++..-...+++.++.+++
T Consensus 86 ~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~ 165 (529)
T TIGR02868 86 GRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLL 165 (529)
T ss_pred HHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999987653 33344444444444444433322233333332223
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 000713 463 TVLCN-TPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFW 541 (1335)
Q Consensus 463 ~~~~~-~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~ 541 (1335)
+..+. ....+..++..++..+..++..+...|.++|+++||.|++|+.+.+++++..++..+...+.....+....+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (529)
T TIGR02868 166 AGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQL 245 (529)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 33344445666777888899999999999999999999999999999888666555554444444443333322
Q ss_pred HHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-c
Q 000713 542 SSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ-K 618 (1335)
Q Consensus 542 ~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~-~ 618 (1335)
.... .+.++.++.+.+.++.++.+.+.+.+.+...+..|+..++..+..+.++++|.+||.++++.++..++.... .
T Consensus 246 ~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~ 325 (529)
T TIGR02868 246 LAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAA 325 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCC
Confidence 2222 233345666777788899999999999889999999999999999999999999999999765432211100 0
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
....+....|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 326 ~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~ 403 (529)
T TIGR02868 326 GALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQ 403 (529)
T ss_pred cccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHH
Confidence 0001123469999999999753 4699999999999999999999999999999999999999999999999
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+++||||+|++|++||+|||.+|.+ .++++.+++++.+++.+++..+|+|.+|.+||+|.+||||||||++|||
T Consensus 404 ~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiAR 483 (529)
T TIGR02868 404 DELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALAR 483 (529)
T ss_pred HHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHH
Confidence 6899999999999999999999865 5788899999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCC
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~ 812 (1335)
|++++|+|+|||||||+||+++++.|.+.+. ...+++|+|+|||++
T Consensus 484 all~~~~iliLDE~TSaLD~~te~~I~~~l~-~~~~~~TvIiItHrl 529 (529)
T TIGR02868 484 ALLADAPILLLDEPTEHLDAGTESELLEDLL-AALSGKTVVVITHHL 529 (529)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEecCC
Confidence 9999999999999999999999999988765 456789999999985
No 26
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.9e-62 Score=622.72 Aligned_cols=548 Identities=21% Similarity=0.249 Sum_probs=440.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 298 PSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRL 377 (1335)
Q Consensus 298 ~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r 377 (1335)
.+.++..++.+++.+....+..++..++..+.|++++.+++.+-.... ...-..++++++++.++..++.....+...+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~-~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG-LSTLSVLALAMLAVAIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888888899999999999999999999997753221 1223334445555555666666666667778
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 378 IGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 378 ~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
++.++...+...+|+|.++++.....+.++|+++|.+ .|++.+.++.. .+.......+.+++.+++++..-++.+++.
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~ 284 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVV 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998888889999999999 69999998753 333333333333344444444444444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~ 536 (1335)
++++++...+...+.+..++..++.++..+++.+.+.|.++|+++||.++.|+.+.++..+.-++..+...+.....+..
T Consensus 285 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR01846 285 IGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIA 364 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666667777888888888999999999999999999999999999999888887765554444444433333332
Q ss_pred hHHHhHHH--HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 000713 537 GFLFWSSP--VLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMN 614 (1335)
Q Consensus 537 ~~~~~~~p--~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~ 614 (1335)
..+..... ..+.++.+|++....+.+|.+.+.+...+...+..|+..+...+..+.+++++++|+.++++.++..+..
T Consensus 365 ~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~ 444 (694)
T TIGR01846 365 GQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA 444 (694)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC
Confidence 22222111 1233466788877888999999999999999999999999999999999999999999999875432211
Q ss_pred ccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--
Q 000713 615 IRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-- 692 (1335)
Q Consensus 615 ~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-- 692 (1335)
...+. ...+..|+++|++|+|+++ ++++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 445 -~~~~~-~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i 521 (694)
T TIGR01846 445 -GLAAL-PELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521 (694)
T ss_pred -CCCCC-CCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh
Confidence 10111 1123579999999999753 357999999999999999999999999999999999999999999999983
Q ss_pred -----------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 -----------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 -----------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++||+|++.++++|++|||.++.+ .++++..++++.+++.+.++.+|.|.+|.+|++|.+||||||||
T Consensus 522 ~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qr 601 (694)
T TIGR01846 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQR 601 (694)
T ss_pred hhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHH
Confidence 699999999999999999999864 56778888999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||++++|+++|||||||+||+++++++.+.+.+ ..+++|+|++||+++.++.||+|++|++|++++.|+++|+++
T Consensus 602 i~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~ 680 (694)
T TIGR01846 602 IAIARALVGNPRILIFDEATSALDYESEALIMRNMRE-ICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLA 680 (694)
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH-HhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999886654 457899999999999999999999999999999999999998
Q ss_pred cchHHHHHHHH
Q 000713 841 SSKEFQELVSA 851 (1335)
Q Consensus 841 ~~~~~~~l~~~ 851 (1335)
.++.|.++++.
T Consensus 681 ~~~~y~~l~~~ 691 (694)
T TIGR01846 681 LQGLYARLWQQ 691 (694)
T ss_pred cCChHHHHHHh
Confidence 88888887653
No 27
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.2e-62 Score=610.98 Aligned_cols=536 Identities=23% Similarity=0.309 Sum_probs=415.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHH
Q 000713 306 ICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF--KYEGYLLAITLFLAKILESLS--QRQRYF--RSRLIG 379 (1335)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~--~~~~~~--~~~r~g 379 (1335)
+..|+.++++.+.+++..+...+..+++..+++-+..++.+ ......+++.+++..++..++ .++|+| ...++.
T Consensus 660 ~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt 739 (1228)
T KOG0055|consen 660 KPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLT 739 (1228)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888899999999998888888998888877643321 222222444333333333322 344444 355666
Q ss_pred HHHHHHHHHHHHHHHHcCCh--hhhcCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 380 LKVRSLLTAAIYRKQLRLSN--AARLMHSGGEIMNYVTVDAYRIGEFPF-----WFHQIWTTSVQLCIALIILFHAVGLA 452 (1335)
Q Consensus 380 ~riR~~L~~~Iy~K~L~ls~--~~~~~~s~G~IvNlms~D~~ri~~~~~-----~~h~~w~~plqi~lal~lL~~~lG~a 452 (1335)
+|+|. ..|+|.|+... .+..+++ |.+.+.+++|+..+...+. .+..+-+...-+++|+++-|+ -
T Consensus 740 ~R~R~----~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~----l 810 (1228)
T KOG0055|consen 740 KRLRS----MMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR----L 810 (1228)
T ss_pred HHHHH----HHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 66665 45666666543 3445677 9999999999987765432 122222333344444444333 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 453 TIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLR 532 (1335)
Q Consensus 453 ~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~ 532 (1335)
++.++++.+++....+...+.+.+...+.++..++--+..+|++.|||+||.++-|++|.+.+.+.-++=.+...+...+
T Consensus 811 alv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i 890 (1228)
T KOG0055|consen 811 ALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLI 890 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888899999999999999999999999999999999999999998887765322222222222222
Q ss_pred HHHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-
Q 000713 533 KAYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE- 609 (1335)
Q Consensus 533 ~a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e- 609 (1335)
..+...+..+..++ .....||.+....+..++.++|.++..+.+-...+.+.....+.+..|+.|..+|.+.++.+.
T Consensus 891 ~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~ 970 (1228)
T KOG0055|consen 891 SGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPT 970 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCC
Confidence 33322222222222 233456777777788999999999887777666666777777788999999999999998754
Q ss_pred CCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
++.+.. .....+...+.|+++|++|+||.+++.++|+|+||+|++|+.+|+|||+||||||.+.+|.+.++|++|.|.+
T Consensus 971 i~~~~~-~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 971 IDPDST-SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCC-CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 444321 1111111456799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCe-------------EEEEecCCcCCCCCHHHHhccCC-CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 690 YGK-------------TAYVSQTAWIQTGSIRENILFGS-PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 690 ~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~-~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
||+ +|.|+|+|.+|++||||||.+|. ..++++..++.+....++.+..+|+|.+|.+||+|.+|||
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSG 1129 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSG 1129 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCc
Confidence 983 79999999999999999999993 3577777788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||||||||+.+||+||||||.|||||.++. ++.++.++....|+|.|+|+|+++.+++||.|+|++||+|+|+|++
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSE-rvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESE-RVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTH 1208 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhH-HHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccH
Confidence 999999999999999999999999999999986 5667888888899999999999999999999999999999999999
Q ss_pred HHHHhcchHHHHHHHHh
Q 000713 836 HQLLASSKEFQELVSAH 852 (1335)
Q Consensus 836 ~~l~~~~~~~~~l~~~~ 852 (1335)
++|++.++.+.+++..+
T Consensus 1209 ~~L~~~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1209 DELLAKRGIYFRLVQLQ 1225 (1228)
T ss_pred HHHHhCCCchHHHhhhc
Confidence 99999999898887654
No 28
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-60 Score=597.01 Aligned_cols=539 Identities=19% Similarity=0.245 Sum_probs=420.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVR 383 (1335)
Q Consensus 304 l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR 383 (1335)
.++.+++.++...++.++..++..+.|++++.+++.+...+. . ..+.+.+++..++..+...-..+...+++.++|
T Consensus 13 ~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (585)
T TIGR01192 13 YLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-V---LPTLALWAGFGVFNTIAYVLVAREADRLAHGRR 88 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888889999999999999999999999997754321 1 111111122223333333333455678888899
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+...+|+|.++++.....++++|++++.++.|++.+.++.. .+..+....+.+++++++++..-...+++.++++++
T Consensus 89 ~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 168 (585)
T TIGR01192 89 ATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGIL 168 (585)
T ss_pred HHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888999999999999999987643 333444445555444444433222233333344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRN----VEYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~----~El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.++.++.+++..+..++..+.+.|.++|+++||.++.|+.+.+++++.-+ .+.+..+.......+..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (585)
T TIGR01192 169 YILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRM 248 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555667777888888888888999999999999999999999999988777665433 233322222222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+... ..+.++.++.+.+.++.++.+.+++.+.++..+..|+..+...+..+.+++++++|+.++++.++..++.....
T Consensus 249 ~~~~--~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~ 326 (585)
T TIGR01192 249 ASTI--SMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAP 326 (585)
T ss_pred HHHH--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCC
Confidence 2111 12344567777777889999999999999999999999999999999999999999999997653221111100
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
+. ......|+++|++|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 327 ~~-~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~ 403 (585)
T TIGR01192 327 EL-PNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVT 403 (585)
T ss_pred CC-CCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCC
Confidence 01 1123469999999999742 4689999999999999999999999999999999999999999999987
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
.++|++|+|+++++|++|||.++.+ .++++.+++++.+++.+.+..+|.|.+|.+|++|.+||||||||++||
T Consensus 404 ~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lA 483 (585)
T TIGR01192 404 RESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIA 483 (585)
T ss_pred HHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 3799999999999999999999864 456677788888889999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKE 844 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~ 844 (1335)
||++++|+++|||||||+||+++++.+.+.+. ...+++|+|+|||+++.++.+|+|++|++|++++.|+++++.++++.
T Consensus 484 Rall~~p~ililDEpts~LD~~~~~~i~~~l~-~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 562 (585)
T TIGR01192 484 RAILKNAPILVLDEATSALDVETEARVKNAID-ALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGR 562 (585)
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCCh
Confidence 99999999999999999999999999987654 44568999999999999999999999999999999999999988888
Q ss_pred HHHHHHHh
Q 000713 845 FQELVSAH 852 (1335)
Q Consensus 845 ~~~l~~~~ 852 (1335)
+.++....
T Consensus 563 y~~l~~~~ 570 (585)
T TIGR01192 563 FYKLLRRS 570 (585)
T ss_pred HHHHHHhC
Confidence 88887644
No 29
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.3e-60 Score=598.64 Aligned_cols=534 Identities=25% Similarity=0.354 Sum_probs=416.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLT 387 (1335)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~ 387 (1335)
++ .+..+.++.++..++....|.++..+++.+... ......+...+++..++..++..-..+...+++.++...+.
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD---LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67 788888899999999999999999999887611 11111222222222223334444444555666688888899
Q ss_pred HHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000713 388 AAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWF-HQIWTTSVQLCIALIILFHAVGL-ATIAALVVITITVL 465 (1335)
Q Consensus 388 ~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~-h~~w~~plqi~lal~lL~~~lG~-a~l~gl~v~vl~~~ 465 (1335)
..+|+|.++++....+++.+|++++.+++|++.+.+..... ..+-..++.++..+++++ .+.| .++..++..+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLF-SLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHH
Confidence 99999999999888888889999999999999999887654 222223333333333332 2333 23333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H-hHH
Q 000713 466 CNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFL-F-WSS 543 (1335)
Q Consensus 466 ~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~-~-~~~ 543 (1335)
....+.++.++..++..+..++..+.+.|.++|+++||.|+.|+...++..+.-+...+...+.....+....+ . ...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556656688888888999999999999999999999999999776666554333333322222222222111 1 111
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCC
Q 000713 544 PVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIEN 623 (1335)
Q Consensus 544 p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 623 (1335)
-..+.++.++.+.+..+.++.+.+.+.+.+...+..|+..+...+..+.++..|.+|+.++++.++...+..... ..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~---~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPL---KD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCC---CC
Confidence 122334445566666777999999999999999999999999999999999999999999998754322111110 11
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
.+..|+++|++|+|++ ++++|+|+||++++||.+||+||+|||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 3456999999999975 35899999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
+++||||+|++|++||+|||.+|++ .++++..++++.+++.+.++.+|+|.+|.+||+|.+||||||||++||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 3799999999999999999999988 57788889999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHH
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELV 849 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~ 849 (1335)
||+|++||||||+||+++.+.+.+.+.. ..++||+|+|+|+++.+..||+|+||++|+|++.|+++||+++++.|.++.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~-l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHH-HhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHH
Confidence 9999999999999999999999877653 347899999999999999999999999999999999999999999999888
Q ss_pred HHh
Q 000713 850 SAH 852 (1335)
Q Consensus 850 ~~~ 852 (1335)
+.+
T Consensus 562 ~~~ 564 (567)
T COG1132 562 QAQ 564 (567)
T ss_pred HHh
Confidence 654
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-60 Score=594.89 Aligned_cols=506 Identities=23% Similarity=0.264 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 308 HWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAE-SKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLL 386 (1335)
Q Consensus 308 ~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~-~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L 386 (1335)
+|+.++...++.++..++..+.|++++.+++.+. +.. ....-+.+++.+++..++..++.....+...+++.++...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGE-PLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQL 79 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999873 322 12222334444445555566665556677788899999999
Q ss_pred HHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 000713 387 TAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILF---HAVGLATIAALVVITI 462 (1335)
Q Consensus 387 ~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~---~~lG~a~l~gl~v~vl 462 (1335)
...+|+|.++++.....+.++|+++|.+++|++++.++.. .+..+....+.+++++++++ +.+++..+ +.+++
T Consensus 80 r~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l---~~~~l 156 (529)
T TIGR02857 80 RERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILL---LTAPL 156 (529)
T ss_pred HHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHH
Confidence 9999999999988877888999999999999999998754 45555555555555544443 33333333 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNV----EYKWLSAVQLRKAYNGF 538 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~----El~~l~~~~~~~a~~~~ 538 (1335)
...+...+.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+.-++ ..+..+..........+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02857 157 IPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLEL 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334556777778888889999999999999999999999999999988887654333 33222222222222222
Q ss_pred HHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccc
Q 000713 539 LFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQK 618 (1335)
Q Consensus 539 ~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~ 618 (1335)
+.... . +.++.++.+.+..+.+|.+.++.++.+...+..|+..+...+..+.+++++++|+.++++.++.+.+..+ .
T Consensus 237 ~~~~~-~-~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~-~ 313 (529)
T TIGR02857 237 FATLS-V-ALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAP-V 313 (529)
T ss_pred HHHHH-H-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcC-C
Confidence 11111 1 1112344444557789999999999999999999999999999999999999999999975432211111 1
Q ss_pred CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------
Q 000713 619 GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------ 692 (1335)
Q Consensus 619 ~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------ 692 (1335)
+. . ....|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 314 ~~-~-~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~ 390 (529)
T TIGR02857 314 TA-A-PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD 390 (529)
T ss_pred CC-C-CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCC
Confidence 10 1 22469999999999753 357999999999999999999999999999999999999999999999984
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++||+|+|+++++|++|||.++.+ .++++.+++++.+++.++++.+|+|.+|.+||+|.+||||||||++||
T Consensus 391 ~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~la 470 (529)
T TIGR02857 391 ADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALA 470 (529)
T ss_pred HHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHH
Confidence 799999999999999999999865 567788999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
||++++|++++||||||+||+++.+.+++.+.+ ..+++|+|+|||+++.++.||+|++|
T Consensus 471 Ral~~~~~ililDE~ts~lD~~~~~~i~~~l~~-~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 471 RAFLRDAPLLLLDEPTAHLDAETEALVTEALRA-LAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH-hcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999876654 45789999999999999999999985
No 31
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-59 Score=553.50 Aligned_cols=530 Identities=22% Similarity=0.303 Sum_probs=421.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 314 MSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRK 393 (1335)
Q Consensus 314 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K 393 (1335)
...++..+..++...+-.++..+++-+-..+. ...-+.++++++++.++..++.---....++.+.++|..+...+++|
T Consensus 4 i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~-~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 4 ISALLAVLSGIAIIAQAALLADILTKLIEGQL-FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777766665533321 22233445555666666666665556677889999999999999999
Q ss_pred HHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 394 QLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WF---HQIWTTSVQLCIALIILFHAVGLATIAALVVITITVLCNTP 469 (1335)
Q Consensus 394 ~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~---h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~ 469 (1335)
..+++...-+...+|++.+++..-++.+...+. |+ ...-..|+-+.+++++..+.-|+..+..+. ++....+.
T Consensus 83 l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~P---lIPlfMil 159 (559)
T COG4988 83 LAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAP---LIPLFMIL 159 (559)
T ss_pred HHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 999998888888999999999999998876542 33 333456777888877777765554444433 33334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHhHHHH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAI----EILRNVEYKWLSAVQLRKAYNGFLFWSSPV 545 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I----~~~R~~El~~l~~~~~~~a~~~~~~~~~p~ 545 (1335)
+++..++..++.++....--...-+-|+|+.++|.|+-.+...++| ++.|+.-++.+|-.....++..++...+-
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsi- 238 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSI- 238 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 6666677777777777777778888999999999999876655555 56888888888877666666655544332
Q ss_pred HHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCC
Q 000713 546 LVSTATFGACYFLN-VPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENV 624 (1335)
Q Consensus 546 lv~~~tF~~~~l~~-~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 624 (1335)
....+ +...-+.+ ++++-..+|.+|-+---.-.|++.+....-.-.++..+.+++..|++.|....+...........
T Consensus 239 AlvAv-~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 239 ALVAV-YIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHH-HHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 22223 33344556 59999999999887777778999999999999999999999999999877544332211111102
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
...++.+|++|.|++. +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 318 ~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k 395 (559)
T COG4988 318 PIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRK 395 (559)
T ss_pred CceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHh
Confidence 2345556999999864 3899999999999999999999999999999999999999999999998
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
+++||+|+|.++++|+||||.++++ .+++...++++..++.+.++. |.|.+|.|||+|.+|||||+||++||||++++
T Consensus 396 ~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~ 474 (559)
T COG4988 396 QISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSP 474 (559)
T ss_pred HeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCC
Confidence 3799999999999999999999988 567788999999999999998 99999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHH
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
+++|||||||++||+++++.|.+.+ ....++||+|++||+++.+..+|+|++|++|+++++|+++++.++++.|.+++.
T Consensus 475 ~~l~llDEpTA~LD~etE~~i~~~l-~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~ 553 (559)
T COG4988 475 ASLLLLDEPTAHLDAETEQIILQAL-QELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLK 553 (559)
T ss_pred CCEEEecCCccCCCHhHHHHHHHHH-HHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHH
Confidence 9999999999999999998887654 445567999999999999999999999999999999999999999999999887
Q ss_pred Hhh
Q 000713 851 AHK 853 (1335)
Q Consensus 851 ~~~ 853 (1335)
.+.
T Consensus 554 ~q~ 556 (559)
T COG4988 554 QQE 556 (559)
T ss_pred HHh
Confidence 643
No 32
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.6e-59 Score=631.95 Aligned_cols=543 Identities=18% Similarity=0.217 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 306 ICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSL 385 (1335)
Q Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~ 385 (1335)
+.+++.++++.++.++..++..+.|+++..+++-+-+.......+..+++.+++..++..++..-..|...+++.++-..
T Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 900 (1466)
T PTZ00265 821 FSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKT 900 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566688888899999999999999999999854332111112333344444444444444444455667788888888
Q ss_pred HHHHHHHHHHcCChhhhc--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 386 LTAAIYRKQLRLSNAARL--MHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 386 L~~~Iy~K~L~ls~~~~~--~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
+...+|+|.++++....+ ++++|++++.+++|++.+.++.. .+..+...++.+++++++++. +.|. .+++++++
T Consensus 901 lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~-~~~~--l~l~~~~~ 977 (1466)
T PTZ00265 901 MKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFY-FCPI--VAAVLTGT 977 (1466)
T ss_pred HHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHH
Confidence 999999999999877654 48899999999999999987643 233333344444444333322 2221 11111222
Q ss_pred HHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHH
Q 000713 463 TVLCNTPLAKLQHKFQ-TKL-----------------MVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYK 524 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q-~~~-----------------m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~ 524 (1335)
+..+...+.+..+... ++. .+..++....++|.++|||+||.|+-|+.+.+++.+.-+...+
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~ 1057 (1466)
T PTZ00265 978 YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNK 1057 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2222233333222211 111 1112334678999999999999999999999988875544444
Q ss_pred HHHHHHHHHHHHhHHHhHHHH--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 525 WLSAVQLRKAYNGFLFWSSPV--LVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIV 602 (1335)
Q Consensus 525 ~l~~~~~~~a~~~~~~~~~p~--lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~ 602 (1335)
..++.....+....+..+... .+.++.+|.+.+..+.++.+.++.++..+.....++..+...++.+.++++|.+|+.
T Consensus 1058 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~ 1137 (1466)
T PTZ00265 1058 GQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYY 1137 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333222222222222 234556788888888999999998886665555678888899999999999999999
Q ss_pred HHhcCCC-CCcccccccC--CCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC
Q 000713 603 NFLEAPE-LQSMNIRQKG--NIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE 679 (1335)
Q Consensus 603 ~fL~~~e-~~~~~~~~~~--~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~ 679 (1335)
++++.++ .+.......+ .....++.|+++|++|+|++++++++|+|+||+|++|+.+|||||+|||||||+++|+|+
T Consensus 1138 ~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ 1217 (1466)
T PTZ00265 1138 PLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRF 1217 (1466)
T ss_pred HHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 9997643 2111100000 001123569999999999865456899999999999999999999999999999999999
Q ss_pred CCC------------------------------------------------------CCcEEEEcCe-------------
Q 000713 680 VPH------------------------------------------------------TQGTIQVYGK------------- 692 (1335)
Q Consensus 680 ~~~------------------------------------------------------~~G~i~v~g~------------- 692 (1335)
++| ++|+|.++|.
T Consensus 1218 ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~ 1297 (1466)
T PTZ00265 1218 YDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNL 1297 (1466)
T ss_pred CCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhh
Confidence 998 6999999983
Q ss_pred EEEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 693 TAYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
+|||+|+|.+|++||||||.+|.+ ..++..+++++.+++.+.+..+|+|.+|.+||+|.+|||||||||+|||||+++|
T Consensus 1298 i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265 1298 FSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred ccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999965 5677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccccCCeEEEEeC----CeEE-EecChHHHHh-cchH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPAFDSVLLMSD----GEIL-RAAPYHQLLA-SSKE 844 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl~~----G~i~-~~g~~~~l~~-~~~~ 844 (1335)
+||||||||||||+++.+.|.+.+.+.. .+++|+|+|||+++.++.||+|++|++ |+++ ++|+++||++ .++.
T Consensus 1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~ 1457 (1466)
T PTZ00265 1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCCh
Confidence 9999999999999999998877665443 368999999999999999999999999 9955 8999999997 4788
Q ss_pred HHHHHHH
Q 000713 845 FQELVSA 851 (1335)
Q Consensus 845 ~~~l~~~ 851 (1335)
|.++++.
T Consensus 1458 Y~~l~~~ 1464 (1466)
T PTZ00265 1458 YKKYVKL 1464 (1466)
T ss_pred HHHHHhh
Confidence 8887653
No 33
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.4e-58 Score=625.70 Aligned_cols=474 Identities=18% Similarity=0.201 Sum_probs=373.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
....+.+.-..+-..+|++.++.+..-.+...+|+|+|.++.|++.+.+... .+..+...++.++.++++++..-.+.+
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777788889999888777888999999999999999998654 455556667777666666544333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.++++++.+.++.+..+..++.++...+.++...+..+|.++|+++||.|+||+.|.++..+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344445555556666666667777888899999999999999999999999887776555444332222222
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYF-LNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l-~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~ 612 (1335)
.+..........++ ++..+.+.+ ..+.++++.+..++.+...+..|+..+......+.++.+|.+||.+|++.++.++
T Consensus 1189 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~ 1267 (1522)
T TIGR00957 1189 RWLAVRLECVGNCI-VLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267 (1522)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 22221111111111 112222333 3467999999999998889999999999999999999999999999997653222
Q ss_pred ccc--cccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc
Q 000713 613 MNI--RQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY 690 (1335)
Q Consensus 613 ~~~--~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~ 690 (1335)
... ...+..-+.++.|+++|++|+|+++. .++|+|+||+|++||++||||++|||||||+++|+|+++|++|+|.+|
T Consensus 1268 ~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~Id 1346 (1522)
T TIGR00957 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIID 1346 (1522)
T ss_pred ccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEEC
Confidence 111 11111101346799999999997543 479999999999999999999999999999999999999999999999
Q ss_pred C-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 691 G-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 691 g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
| +++||||+|.+|++||||||....++++++..++++.|++.+.+..+|.|.+|++||+|.+|||||
T Consensus 1347 G~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1347 GLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQ 1426 (1522)
T ss_pred CEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHH
Confidence 8 379999999999999999998434677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||++||||++++|+|+|||||||+||+++.+.|.+ .++...+++|+|+|+|+++.+..+|+|+||++|+|+|.|+++|
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~-~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~e 1505 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS-TIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSN 1505 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH-HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999877765 4455567999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHH
Q 000713 838 LLASSKEFQELVSA 851 (1335)
Q Consensus 838 l~~~~~~~~~l~~~ 851 (1335)
|+++++.|.+++++
T Consensus 1506 Ll~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1506 LLQQRGIFYSMAKD 1519 (1522)
T ss_pred HHhCCCHHHHHHHH
Confidence 99888888888764
No 34
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.3e-57 Score=613.74 Aligned_cols=476 Identities=17% Similarity=0.221 Sum_probs=356.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFP-FWFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~-~~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
..+.+.++-..+...+|++.++.+..-.+.+.+|+|+|.++.|++.+.+.. ..+..+....++++.+++++.....+..
T Consensus 977 ~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~ 1056 (1622)
T PLN03130 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISL 1056 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777888999999999888888999999999999999998865 3455555566666555554433222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.+.++++++.+..+..+..++.++..+..+....+..+|.++|+++||.|++|+.|.++..+..+...+.........
T Consensus 1057 ~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1057 WAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333344444455555566666677778889999999999999999999998877665554443322211111
Q ss_pred HHHhHHHhHHHHHHHHHHHHHHHHh-cCccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 534 AYNGFLFWSSPVLVSTATFGACYFL-NVPLY-----ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 534 a~~~~~~~~~p~lv~~~tF~~~~l~-~~~Lt-----~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
.+..........++. +..+.+.+. ++..+ ++.+-..++....+..++..+......+.++.+|++|+.++++.
T Consensus 1137 ~wl~~~l~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~ 1215 (1622)
T PLN03130 1137 RWLAIRLETLGGLMI-WLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDL 1215 (1622)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 111111111111111 111122222 22211 23333344444556667777777788889999999999999976
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ ..+...+.++.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|
T Consensus 1216 ~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G 1294 (1622)
T PLN03130 1216 PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294 (1622)
T ss_pred CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 543221111 111111134579999999999653 24799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++||||+|.+|++||||||.++.+.++++..++++.|++.+.++.+|.|.+|++||+|.+
T Consensus 1295 ~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~n 1374 (1622)
T PLN03130 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374 (1622)
T ss_pred eEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCC
Confidence 999998 3799999999999999999999888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..||+|+||++|+|+|.
T Consensus 1375 LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~-I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~ 1453 (1622)
T PLN03130 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEF 1453 (1622)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH-HHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999998877654 4455679999999999999999999999999999999
Q ss_pred cChHHHHhc-chHHHHHHHHhh
Q 000713 833 APYHQLLAS-SKEFQELVSAHK 853 (1335)
Q Consensus 833 g~~~~l~~~-~~~~~~l~~~~~ 853 (1335)
|+|+||+++ ++.|.++++...
T Consensus 1454 Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1454 DTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CCHHHHHhCCCCHHHHHHHHcC
Confidence 999999986 578888876543
No 35
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-56 Score=608.18 Aligned_cols=473 Identities=18% Similarity=0.216 Sum_probs=353.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 376 RLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATI 454 (1335)
Q Consensus 376 ~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l 454 (1335)
.+.+.++-..+...+|++.++.+..-.+++.+|+++|.+++|++.+.+.+. .+..+....++++.+++++.....+..+
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666778888888887777788999999999999999988654 3444444555555555544333222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 455 AALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKA 534 (1335)
Q Consensus 455 ~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a 534 (1335)
+.+.+.++++.+..+..+..++.++..+..+..-.+..+|.++|+++||.|++|+.|.++..+..+...+..........
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1134 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNR 1134 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222333333444556666677777888899999999999999999999988776665544433222111111
Q ss_pred HHhHHHhHHHHHHHHHHH-HHHHHh-cCccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 535 YNGFLFWSSPVLVSTATF-GACYFL-NVPLY-----ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 535 ~~~~~~~~~p~lv~~~tF-~~~~l~-~~~Lt-----~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
+..+...... ..++.+ +.+.+. .+.+. ++.+-.+++....+..|+..+...+..+.++.+|++||.++++.
T Consensus 1135 wl~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~ 1212 (1495)
T PLN03232 1135 WLTIRLETLG--GVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDL 1212 (1495)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1111110000 111112 222222 22221 22222344555567788999999999999999999999999976
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ ..+...+.++.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|+|+++|++|
T Consensus 1213 ~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G 1291 (1495)
T PLN03232 1213 PSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG 1291 (1495)
T ss_pred CccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 543221111 111111134579999999999643 35799999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++||||+|.+|++||||||.++.+.++++..++++.+++.+.++.+|.|.+|++||+|.+
T Consensus 1292 ~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~ 1371 (1495)
T PLN03232 1292 RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371 (1495)
T ss_pred eEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCC
Confidence 999998 3799999999999999999999888888889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||||||++||||++++|+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+..+|+|++|++|+|+|.
T Consensus 1372 LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~-L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~ 1450 (1495)
T PLN03232 1372 FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRT-IREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEY 1450 (1495)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH-HHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999998877654 4555679999999999999999999999999999999
Q ss_pred cChHHHHhcch-HHHHHHHHh
Q 000713 833 APYHQLLASSK-EFQELVSAH 852 (1335)
Q Consensus 833 g~~~~l~~~~~-~~~~l~~~~ 852 (1335)
|+|+||+++++ .|.++++..
T Consensus 1451 Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1451 DSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred CCHHHHHhCCCCHHHHHHHHh
Confidence 99999998764 788887653
No 36
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-56 Score=519.43 Aligned_cols=519 Identities=22% Similarity=0.298 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCC-c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Q 000713 323 VLTLSAGPLFLNAFILVAESKAG-F--KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSN 399 (1335)
Q Consensus 323 ~~~~~~~P~ll~~li~~~~~~~~-~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~ 399 (1335)
-.+....|++++..++-+++.+. + .......+.+++++.+..+++.---.+....+..++--....-+|+..+.++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44556789999999998863221 1 11223344455556666665554445555566666666677788999999988
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 000713 400 AARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATI-AALVVITITVLCNTPLAKLQHKF 477 (1335)
Q Consensus 400 ~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l-~gl~v~vl~~~~~~~~~~~~~~~ 477 (1335)
....+..+|++.+.|..-...+.+++. .+..+.-..+++.+....+++..|++.. ..++.+.....+...+.++-.++
T Consensus 123 ~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~f 202 (591)
T KOG0057|consen 123 SFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRF 202 (591)
T ss_pred HhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHH
Confidence 888888999999999888888887754 3444555667888888899999998543 33444445556677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---hHHHhHHHHHHHHHHHH
Q 000713 478 QTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEI-LRNVEYKWLSAVQLRKAYN---GFLFWSSPVLVSTATFG 553 (1335)
Q Consensus 478 q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~-~R~~El~~l~~~~~~~a~~---~~~~~~~p~lv~~~tF~ 553 (1335)
+++..++.|+-.+..-+.|.|-.+||.|+=|+.-.+++.+ +++.|-..++-...+...+ ..+|... ++.+...+
T Consensus 203 R~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~--~~~im~l~ 280 (591)
T KOG0057|consen 203 RKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVA--LTFIMVLG 280 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999988888765 4555554444333332222 1222111 11112222
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEee
Q 000713 554 ACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSA 633 (1335)
Q Consensus 554 ~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~ 633 (1335)
..-..++.+|.+...-..+++..|+.|+..+...+..+.|+..-..-....++.++...+. ..|. ...++.|+++|+
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i-~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI-ELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc-ccCCCcEEEEee
Confidence 2223456799999999999999999999999999999998887776665544333211110 0111 113456999999
Q ss_pred EEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCC
Q 000713 634 SFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTA 700 (1335)
Q Consensus 634 ~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~ 700 (1335)
+|+|++ ++++|+++||+|++||.|||+|+|||||||++++|+++.+ ++|+|.++|. ||||||+.
T Consensus 358 ~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 999985 3569999999999999999999999999999999999999 9999999994 79999999
Q ss_pred cCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 701 WIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 701 ~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
.+||.||.+||.+|.+. ..++..++.+..++++-+..+|+|.+|.+||+|..|||||||||+||||++.||+|+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 99999999999999875 44455566666689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHH
Q 000713 780 FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
||+||.++.+.+++.+.+ ...+||+|+|-|+++.++.+|+|+++++|++.+.|+++|++.+.+.+.++..
T Consensus 515 TS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~ 584 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWT 584 (591)
T ss_pred ccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhc
Confidence 999999999999987655 7789999999999999999999999999999999999999997666766653
No 37
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-56 Score=515.39 Aligned_cols=535 Identities=23% Similarity=0.337 Sum_probs=393.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-chhHHH-------HHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAG-FKYEGY-------LLAITLFLAKILESLSQRQR 371 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~~~~g~-------~l~~~l~~~~~~~~l~~~~~ 371 (1335)
+++..+| .|+.++++.+++++..+....--.+=+.+|.-..-... ....-| .++++=.++..++.+..|+.
T Consensus 7 ~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~A 85 (573)
T COG4987 7 YLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIFNVMLPSAGVRGLAILRTAARYVERLVSHDA 85 (573)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4444445 77778777777766554433222222333322111110 000111 12222233444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 000713 372 YFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIIL--FHAV 449 (1335)
Q Consensus 372 ~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL--~~~l 449 (1335)
-.|+=+.+.-.+|+|...++..-.....+|++.|.+..|++.+++........|...+-++++..+. +..+
T Consensus 86 -------tfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~ 158 (573)
T COG4987 86 -------TFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSI 158 (573)
T ss_pred -------HHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4567788888999999999998888889999999999999999999888877776655444443333 5556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-
Q 000713 450 GLATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSA- 528 (1335)
Q Consensus 450 G~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~- 528 (1335)
+.+.+.++...++++.+...+.+..++..++..+.+..--....+.+.|+..++++|-++.|.+.+++ .|..|.+.
T Consensus 159 ~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~---~e~~~~~~q 235 (573)
T COG4987 159 PLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA---TEASWLKAQ 235 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHH---HHHHHHHHH
Confidence 66777777777777778888888888888888888888888899999999999999999999887764 34433332
Q ss_pred --HHHHHHHHhHHHhHHH-HHHHHHHH-HHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 529 --VQLRKAYNGFLFWSSP-VLVSTATF-GACYFLNVPLY-ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVN 603 (1335)
Q Consensus 529 --~~~~~a~~~~~~~~~p-~lv~~~tF-~~~~l~~~~Lt-~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~ 603 (1335)
.+.......++..... .++....+ .++..-.+.++ +..+...+..|..+..-....|.++..+-|+..|.+|+.+
T Consensus 236 ~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~ 315 (573)
T COG4987 236 RKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLND 315 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhh
Confidence 2222222222222111 11111111 11111113333 2222222222333222112333677888999999999999
Q ss_pred HhcCCCCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC
Q 000713 604 FLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT 683 (1335)
Q Consensus 604 fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~ 683 (1335)
.+++++......+..+. .+..++++|++|+|+++ ..++|+|+||++++||++||+|++|||||||++.|.|-++|+
T Consensus 316 i~~q~~e~~~~~~~~~~---~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~ 391 (573)
T COG4987 316 ILDQKPEVTFPDEQTAT---TGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391 (573)
T ss_pred hccCCcccCCCccccCC---ccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC
Confidence 99875533222111111 22279999999999875 357999999999999999999999999999999999999999
Q ss_pred CcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 684 QGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 684 ~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+|+|..+| .+++++|.+.+|++|+|||+.++++. .++...+++++.+|.+-++..|+|.+|.+||.
T Consensus 392 ~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~ 471 (573)
T COG4987 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEG 471 (573)
T ss_pred CCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccC
Confidence 99999998 36889999999999999999999874 56778899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
|..||||||||++|||++.+|++++||||||.|||+.|.+++++.+.. ..+|||+|+|||++..++.+|+|++|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~-~~~~kTll~vTHrL~~le~~drIivl~~Gki 550 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE-HAEGKTLLMVTHRLRGLERMDRIIVLDNGKI 550 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH-HhcCCeEEEEecccccHhhcCEEEEEECCee
Confidence 999999999999999999999999999999999999999999986654 4569999999999999999999999999999
Q ss_pred EEecChHHHHhcchHHHHHHH
Q 000713 830 LRAAPYHQLLASSKEFQELVS 850 (1335)
Q Consensus 830 ~~~g~~~~l~~~~~~~~~l~~ 850 (1335)
+++|+|++++.+++.|.++.+
T Consensus 551 ie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 551 IEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred eecCCHHhhhccccHHHHHhc
Confidence 999999999998888877653
No 38
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.7e-55 Score=597.49 Aligned_cols=467 Identities=17% Similarity=0.200 Sum_probs=359.8
Q ss_pred HHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 384 SLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 384 ~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
..+-..+|++.++.+..-.+.+.+|+|+|.++.|++.+.+.+. .+..+....+.++.++++++....+..++.+.++++
T Consensus 1031 ~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~ 1110 (1560)
T PTZ00243 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYL 1110 (1560)
T ss_pred HHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899999888777888999999999999999998654 455555666666666655544433333332223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFW- 541 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~- 541 (1335)
.+.+...+.+..++.++.....++.-.+..+|.++|+++||.|++|+.|.++..+.-+...+...+......+......
T Consensus 1111 ~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~ 1190 (1560)
T PTZ00243 1111 YYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEF 1190 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566667777777778888899999999999999999999998888755433333222211111111111111
Q ss_pred -HHHHHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc---
Q 000713 542 -SSPVLVSTATFGACY--FLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS-MN--- 614 (1335)
Q Consensus 542 -~~p~lv~~~tF~~~~--l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~-~~--- 614 (1335)
.....+.++.++++. .....++++.+..++.+...+..|+..+...+..+.++.+|++||.++++..+.++ ..
T Consensus 1191 l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1191 LSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 111111222222222 22345788888778877788889999999999999999999999999996322110 00
Q ss_pred --------------------c-cccCC----CCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCH
Q 000713 615 --------------------I-RQKGN----IENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGK 669 (1335)
Q Consensus 615 --------------------~-~~~~~----~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGK 669 (1335)
. +..+. ..+.++.|+++|++|+|+++ ..++|+|+||+|++||++||||++||||
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGK 1349 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIAPREKVGIVGRTGSGK 1349 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEECCCCEEEEECCCCCCH
Confidence 0 00000 00123569999999999753 3469999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHh
Q 000713 670 STLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLE 736 (1335)
Q Consensus 670 STLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~ 736 (1335)
|||+++|+|+++|++|+|.+||. ++||||+|.+|++||||||..+..+++++..++++.|++.+.+.
T Consensus 1350 STLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~ 1429 (1560)
T PTZ00243 1350 STLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVA 1429 (1560)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHh
Confidence 99999999999999999999983 69999999999999999998877788889999999999999999
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD-ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL 815 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~-~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l 815 (1335)
.+|.|.+|.+||+|.+||||||||++||||++++ |+|+|||||||+||+++.+.|.+. ++...+++|+|+|+|+++.+
T Consensus 1430 ~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~-L~~~~~~~TvI~IAHRl~ti 1508 (1560)
T PTZ00243 1430 SESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQAT-VMSAFSAYTVITIAHRLHTV 1508 (1560)
T ss_pred hCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHH-HHHHCCCCEEEEEeccHHHH
Confidence 9999999999999999999999999999999996 999999999999999999888654 45556789999999999999
Q ss_pred ccCCeEEEEeCCeEEEecChHHHHhc-chHHHHHHHHh
Q 000713 816 PAFDSVLLMSDGEILRAAPYHQLLAS-SKEFQELVSAH 852 (1335)
Q Consensus 816 ~~~D~iivl~~G~i~~~g~~~~l~~~-~~~~~~l~~~~ 852 (1335)
..||+|++|++|+|++.|+++||+++ ++.|.++++..
T Consensus 1509 ~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1509 AQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999974 67888887654
No 39
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.8e-55 Score=546.81 Aligned_cols=508 Identities=18% Similarity=0.170 Sum_probs=374.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 304 ILI-CHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKV 382 (1335)
Q Consensus 304 l~~-~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~ri 382 (1335)
+++ .+++.++++.++.++..++....|.+++.+++...... . ....+.+++++ +..++..-..+...+.+.++
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 84 (555)
T TIGR01194 11 LLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG--Q-GSLFSFGGLCL---LALLFRIGADIFPAYAGMHI 84 (555)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--c-hHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 566 78888999999999999999999999988875321110 0 11111111222 22233333344566788889
Q ss_pred HHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 383 RSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALVVITI 462 (1335)
Q Consensus 383 R~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl 462 (1335)
...+...+|+|.++++.....++++|++++.+++|++.+.++...+..+....+.++++++++++.-...+++.++.+++
T Consensus 85 ~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~ 164 (555)
T TIGR01194 85 IANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAIII 164 (555)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998887788999999999999999998765554555555555555544443322223333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWET--HFKNAIE----ILRNVEYKWLSAVQLRKAYN 536 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~--~f~~~I~----~~R~~El~~l~~~~~~~a~~ 536 (1335)
.+.+..+..++.++...+..+..++..+...|.++|++++|.++.|+ ...+++. +.|+...+..+. ....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 240 (555)
T TIGR01194 165 GTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI----FIAA 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHH
Confidence 44455556666777778888888999999999999999999999854 3333333 233322222111 1111
Q ss_pred hHHHhHHHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000713 537 GFLFWSSPVLVSTATFGACYFL---NVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSM 613 (1335)
Q Consensus 537 ~~~~~~~p~lv~~~tF~~~~l~---~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~ 613 (1335)
..+.. ++..+.++.+++. .+.++.+.+++.+.+...+..|+..+...+..+.++++|.+||.++++.++.++.
T Consensus 241 ~~~~~----~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 241 ENFGQ----LLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11111 1111112212111 2578999999999999999999999999999999999999999999864221100
Q ss_pred c---ccccC----CCCCCcccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC
Q 000713 614 N---IRQKG----NIENVNRAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 614 ~---~~~~~----~~~~~~~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~ 684 (1335)
. .+... ........|+++|++|+|++.+ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 00000 0001234699999999997532 2369999999999999999999999999999999999999999
Q ss_pred cEEEEcCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 685 GTIQVYGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 685 G~i~v~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
|+|.++|. ++||+|+++++++|+++|+ ....++++.+++++.+++.+++..+|.|++|. .
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~ 469 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--GEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----T 469 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--ccchhHHHHHHHHHHcCCchhhcccccccCCc-----c
Confidence 99999883 6899999999999999995 23345667788899999999999999999873 7
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~ 830 (1335)
+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+. ..+++|+|+|||+++.+..||+|++|++|+++
T Consensus 470 ~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 470 ALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIV 549 (555)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 89999999999999999999999999999999999999998877643 34689999999999999999999999999998
Q ss_pred Ee
Q 000713 831 RA 832 (1335)
Q Consensus 831 ~~ 832 (1335)
+.
T Consensus 550 ~~ 551 (555)
T TIGR01194 550 KD 551 (555)
T ss_pred Ee
Confidence 64
No 40
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-56 Score=501.89 Aligned_cols=530 Identities=19% Similarity=0.298 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 316 GFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEG-YLLAITLFLAKIL--ESLSQRQRYFRSRLIGLKVRSLLTAAIYR 392 (1335)
Q Consensus 316 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g-~~l~~~l~~~~~~--~~l~~~~~~~~~~r~g~riR~~L~~~Iy~ 392 (1335)
.++..+.-++....|.+.+.+++-+..+..+.+.- +.+++..|+-... ..+..+--.|..-++..-.--.+-..+|+
T Consensus 221 l~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfr 300 (790)
T KOG0056|consen 221 LFLLIIGRLINVSLPILSKWIVDELTAPDTFQYSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFR 300 (790)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhHHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHH
Confidence 33444444556677889999998887554333322 2233222221100 01111111111111111122234556777
Q ss_pred HHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 000713 393 KQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVG-LATIAALVVITITVLCNTPL 470 (1335)
Q Consensus 393 K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG-~a~l~gl~v~vl~~~~~~~~ 470 (1335)
+...||-.-.-+..+||+...|..-...+. +..| ..++--..+.+++|++..+.... |-.+..+..|.+..-+...+
T Consensus 301 Hlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~i 379 (790)
T KOG0056|consen 301 HLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKI 379 (790)
T ss_pred HHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeee
Confidence 777777554444568999888876665554 2222 22332334455555554433333 23333333444444445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHH
Q 000713 471 AKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFK----NAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPVL 546 (1335)
Q Consensus 471 ~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~----~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~l 546 (1335)
...-.|+|++....-.+--..-.+.|-|..+||.|+-|+.-. +.|.+..+.|-+.+....+++...+.++... +
T Consensus 380 TeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lg--l 457 (790)
T KOG0056|consen 380 TEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLG--L 457 (790)
T ss_pred ehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH--H
Confidence 666777888777666665566778888999999999987544 4455556666666555555544443332211 2
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcc
Q 000713 547 VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNR 626 (1335)
Q Consensus 547 v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 626 (1335)
.....+.+|....+.+|.++..-.+..+-.|..|++.+......+....+-.+|+.+.+++++...+.....|- ....+
T Consensus 458 l~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl-~~~~G 536 (790)
T KOG0056|consen 458 LAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPL-KVTQG 536 (790)
T ss_pred hhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCc-cccCC
Confidence 22233455555667899999888888888899999999999999999999999999999765422221111111 11456
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++|.|++ ++|+|+||||++++|+.+|+|||+|+||||+++.+.+..+..+|.|.+||+ |
T Consensus 537 ~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred eEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 8999999999975 479999999999999999999999999999999999999999999999994 7
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
|.||||..+||.||..||.++++- ..+...++.++.+.++.+-.+|+|.+|.+||||-.||||+||||++||+++.+|.
T Consensus 615 GVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 615 GVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred CcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCc
Confidence 999999999999999999999874 3445567778889999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc-chHHHHHHHH
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS-SKEFQELVSA 851 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~-~~~~~~l~~~ 851 (1335)
|++|||.|||||.++.+.| +.++.....|+|.|+|.|+++.+-+||.|++++||+|+|.|+++|+..+ ++.+.++.+.
T Consensus 695 iIlLDEATSALDT~tER~I-QaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~ 773 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAI-QAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQA 773 (790)
T ss_pred EEEEcchhhhcCCccHHHH-HHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHH
Confidence 9999999999999999888 4566666789999999999999999999999999999999999999987 7778888765
Q ss_pred h
Q 000713 852 H 852 (1335)
Q Consensus 852 ~ 852 (1335)
+
T Consensus 774 q 774 (790)
T KOG0056|consen 774 Q 774 (790)
T ss_pred H
Confidence 4
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.3e-53 Score=579.09 Aligned_cols=475 Identities=18% Similarity=0.201 Sum_probs=365.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 375 SRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT 453 (1335)
Q Consensus 375 ~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~ 453 (1335)
..+.+.+.-..+...++++.++.+..-.....+|+|+|.++.|++.+.+... .+..+....+.+++.+++++...++.+
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777788888998888777888999999999999999998654 455556666666666666655545444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 454 IAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 454 l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~ 533 (1335)
++.+.++++.+.+..+..+..++.++.....+....+..+|.++|+.+||.|++|+.|.++..+.-+...+.........
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1108 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTL 1108 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333444445556666666677777788888889999999999999999999999999887765442221111111111
Q ss_pred HHHhHHHhH-HHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 000713 534 AYNGFLFWS-SPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQS 612 (1335)
Q Consensus 534 a~~~~~~~~-~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~ 612 (1335)
.+..+.... .-.++..+.+. .+.....+++.+-.++++...+..++..+...+..+.++.+|++||.+|++.|+...
T Consensus 1109 ~wl~~~~~~i~~~~~~~~~~l--~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~ 1186 (1490)
T TIGR01271 1109 RWFQMRIDIIFVFFFIAVTFI--AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEP 1186 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 111111100 00111111111 111123455556666666666778888888888899999999999999997643221
Q ss_pred cccc----------------ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHH
Q 000713 613 MNIR----------------QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAI 676 (1335)
Q Consensus 613 ~~~~----------------~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~i 676 (1335)
...+ ..+..-+..+.|+++|++|+|+++ .+++|+|+||+|++||++||||++|||||||+++|
T Consensus 1187 ~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1187 RPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred cccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 1000 001001134579999999999753 35899999999999999999999999999999999
Q ss_pred hcCCCCCCcEEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCC
Q 000713 677 LGEVPHTQGTIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDN 743 (1335)
Q Consensus 677 lG~~~~~~G~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~ 743 (1335)
+|+++ .+|+|.++| +++|+||+|.+|++||||||.....+++++..++++.|++.+.+..+|.|.+
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 99997 799999998 3799999999999999999987667788899999999999999999999999
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 744 t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
|.+|++|.+||||||||++||||++++|+|+|||||||+||+++.+.|.+.+ +...+++|+|+|||+++.+..+|+|++
T Consensus 1345 t~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~~DrIlv 1423 (1490)
T TIGR01271 1345 FVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHRVEALLECQQFLV 1423 (1490)
T ss_pred cccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHH-HHHcCCCEEEEEecCHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999988887654 455678999999999999999999999
Q ss_pred EeCCeEEEecChHHHHhcchHHHHHHHHhhh
Q 000713 824 MSDGEILRAAPYHQLLASSKEFQELVSAHKE 854 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~ 854 (1335)
|++|+|++.|+|++++++++.|.+++++..+
T Consensus 1424 L~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLLNETSLFKQAMSAADR 1454 (1490)
T ss_pred EECCEEEEeCCHHHHHcCCcHHHHHHHHhCh
Confidence 9999999999999999888889988876544
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.5e-53 Score=530.29 Aligned_cols=504 Identities=17% Similarity=0.183 Sum_probs=362.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 300 ILRTILICHWRDIFMSGFFALIKVLTLSAG-PLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSRLI 378 (1335)
Q Consensus 300 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~-P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~ 378 (1335)
+++.+++.+++.++...++.++..++.... |++.+.+++.+.+. ...-+.+++.+++..++. .-..+...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 75 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS---LLVLPEFLGLLLLLMAVT----LGSQLALTTL 75 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---chHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 466777888888999899999888888774 67778888765321 111111111111111111 1223344556
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 379 GLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAALV 458 (1335)
Q Consensus 379 g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~gl~ 458 (1335)
+.++...+...+|+|.++++.....++.+|+++|.++.|++.+......+..++...+.+++++++++..-+..+++.++
T Consensus 76 ~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 76 GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVRLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 77777778888999999999888888899999999999999998876566677788888887777776654445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhc--cHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 000713 459 VITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYA--WETHFKNAI----EILRNVEYKWLSAVQLR 532 (1335)
Q Consensus 459 v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~a--wE~~f~~~I----~~~R~~El~~l~~~~~~ 532 (1335)
++++.+.+...+.++.++..++.++..+++.+.++|.++|++++++.. .++.+.++. ++.++...+.. ..
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 231 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRAD----TF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHH----HH
Confidence 556666677788888888889999999999999999999999998433 223344443 33333332221 11
Q ss_pred HHHHhHHHhHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000713 533 KAYNGFLFWSSPVLVSTATFGACYFLNVP---LYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 533 ~a~~~~~~~~~p~lv~~~tF~~~~l~~~~---Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e 609 (1335)
......+ ..++..+.++.+.+.++. .+.+.+.........+..|+..+...+..+.+++++.+||.+++..++
T Consensus 232 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~ 307 (547)
T PRK10522 232 HLSAVNW----SNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPY 307 (547)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1111111 111111222222222211 122222222222233678999999999999999999999999986543
Q ss_pred CCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE
Q 000713 610 LQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV 689 (1335)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v 689 (1335)
.++.. +..+. . ....|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 308 ~~~~~-~~~~~-~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 308 KAEFP-RPQAF-P-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred ccccc-ccccc-C-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 22111 11110 1 1246999999999974 246999999999999999999999999999999999999999999999
Q ss_pred cCe-------------EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 690 YGK-------------TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 690 ~g~-------------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+|. ++|++|++.++++|++|| +...+++..++.++.+++..+++. +.|. .+|.+||||
T Consensus 383 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgG 453 (547)
T PRK10522 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKG 453 (547)
T ss_pred CCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHH
Confidence 873 799999999999999999 444556666777777766655542 2221 147899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
||||++||||++++|+++|||||||+||+++++.+.+.+.+... +++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 454 q~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 454 QKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999998887665433 58999999999999999999999999999876
No 43
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.5e-54 Score=490.81 Aligned_cols=530 Identities=22% Similarity=0.303 Sum_probs=425.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 297 QPSILRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGFKYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 297 ~~sl~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
......+..-.+++.++..+++..+-.++..++|+.+-+.-|-+-...+ ...-..+.+.....++++.+.+.--.+...
T Consensus 10 ~~~~~~a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s-~~TLv~Ltvlal~ly~~~glLd~iR~~~l~ 88 (580)
T COG4618 10 PKNLLAAVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS-VPTLVMLTVLALGLYAFQGLLDAIRSRVLV 88 (580)
T ss_pred CCchhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788888889999999999999999877666655533221 222344555555666777777777778889
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF------WFHQIWTTSVQLCIALIILFHAVG 450 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~------~~h~~w~~plqi~lal~lL~~~lG 450 (1335)
|+|.++-..|..-||.-+++.....+......+.+ .|.+.+..|.. .+...| .|+-++++ |++.-.+|
T Consensus 89 Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW-~P~yl~v~-fl~Hp~lG 162 (580)
T COG4618 89 RIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW-MPLYLAVI-FLFHPWLG 162 (580)
T ss_pred HHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch-HHHHHHHH-HHHHHHHH
Confidence 99999999999999999975544433222233443 57788877764 233444 67766554 66677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 451 LATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQ 530 (1335)
Q Consensus 451 ~a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~ 530 (1335)
+.+++|.++++.+..+|-.++++ --++-.+..-+|....+-.++|..+|+.+|..+...++-.+....-+.+..+..
T Consensus 163 ~~a~~ga~iLv~la~ln~~~t~~---p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~as 239 (580)
T COG4618 163 LIALAGAIILVVLALLNERATRK---PLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERAS 239 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999988888877777666544 445667778888899999999999999999999998888887777676666655
Q ss_pred HHHHHHhHHHhHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000713 531 LRKAYNGFLFWSSPVL--VSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAP 608 (1335)
Q Consensus 531 ~~~a~~~~~~~~~p~l--v~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~ 608 (1335)
........+.-..-.+ +.++..|+|..+++++|++.++..--+..-.-.|+...-....++..|+.|.+|++++|...
T Consensus 240 d~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~ 319 (580)
T COG4618 240 DRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAEL 319 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5544433322222222 34456778888889999999987776666666899999999999999999999999999763
Q ss_pred CCCcccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000713 609 ELQSMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 609 e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~ 688 (1335)
....... ..|. .+..+.++++++.=|+ .++++++|+||++++||-++|+||+|||||||.++|.|..+|.+|.|.
T Consensus 320 p~~~~~m-~LP~---P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR 394 (580)
T COG4618 320 PAAAERM-PLPA---PQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394 (580)
T ss_pred ccccCCC-CCCC---CCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence 3222211 1222 4568999999996544 457999999999999999999999999999999999999999999999
Q ss_pred EcC-------------eEEEEecCCcCCCCCHHHHhc-cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 689 VYG-------------KTAYVSQTAWIQTGSIRENIL-FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 689 v~g-------------~~ayv~Q~~~i~~~Tv~eNIl-fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
+|| .+||.||+--+|+|||.|||. |+.+.|.++.-++.+..+.++-+..+|+|++|.||+.|.+||
T Consensus 395 LDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LS 474 (580)
T COG4618 395 LDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLS 474 (580)
T ss_pred ecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCC
Confidence 998 489999999999999999996 777888887778888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
|||||||+||||+|.||.+++||||-|+||.+....+.+.+.....+|.|+|+|||+++.+..+|+|++|+||++...|+
T Consensus 475 gGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~ 554 (580)
T COG4618 475 GGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGP 554 (580)
T ss_pred chHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCC
Confidence 99999999999999999999999999999999999998877777788999999999999999999999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+|++++
T Consensus 555 r~eVLa~ 561 (580)
T COG4618 555 REEVLAK 561 (580)
T ss_pred HHHHHHH
Confidence 9998753
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.3e-50 Score=512.84 Aligned_cols=504 Identities=17% Similarity=0.165 Sum_probs=374.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 311 DIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF--KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTA 388 (1335)
Q Consensus 311 ~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~--~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~ 388 (1335)
.++...++.++.+++....|++++.+++.+.+.+.. ......+++.+++..++..+ ..|...++..++|..+..
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~----~~~~~~~~~~~~r~~l~~ 172 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSA----IKYLLKELKLRFRVRLTR 172 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 566778888889999999999999999988654321 11112222233333333333 344466667777777777
Q ss_pred HHHHHHHcCChh----hhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000713 389 AIYRKQLRLSNA----ARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGLAT-IAALVVITI 462 (1335)
Q Consensus 389 ~Iy~K~L~ls~~----~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~a~-l~gl~v~vl 462 (1335)
.++++.+.--.. ..++ .+|++++.+++|++.+.+... .+..+...++.++.+++.++..++|.. ++.++.+++
T Consensus 173 ~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l 251 (659)
T TIGR00954 173 YLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFA 251 (659)
T ss_pred HHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777663211 1111 479999999999999988754 455666778888888888887777743 444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhH
Q 000713 463 TVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWS 542 (1335)
Q Consensus 463 ~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~ 542 (1335)
.+.+...+.+.+.+..++..+..++-....+|.++|+++||.|+-|+.+.++..+.=++-.+..++.....+....+...
T Consensus 252 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 331 (659)
T TIGR00954 252 TGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNI 331 (659)
T ss_pred HHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 77778888899999999999999999999999999999999999999887777664444344444443333333322221
Q ss_pred HH----HHHHHHHHHHHHHh-c----CcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 000713 543 SP----VLVSTATFGACYFL-N----VPLYASNVFTF----VATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPE 609 (1335)
Q Consensus 543 ~p----~lv~~~tF~~~~l~-~----~~Lt~~~vFt~----lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e 609 (1335)
.. ..+..+..+..++. . +.+|.+..+.. ..++..+..|+..+...+..+.++.++.+||.++++.++
T Consensus 332 i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 332 VAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12222222232332 1 56887764432 334667789999999999999999999999999997422
Q ss_pred C-Cc-----ccccc-c---------------CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCC
Q 000713 610 L-QS-----MNIRQ-K---------------GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGS 667 (1335)
Q Consensus 610 ~-~~-----~~~~~-~---------------~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~Gs 667 (1335)
. +. ...+. . .......+.|+++|++++|++ ++++|+|+||++++||+++|+|||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGs 489 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGC 489 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCC
Confidence 1 10 00000 0 000012346999999999964 24799999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhccCCC--------CChHHHHHHHHHhccHHHHhh
Q 000713 668 GKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTGSIRENILFGSP--------MDSHQYQETLERCSLIKDLEL 737 (1335)
Q Consensus 668 GKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~Tv~eNIlfg~~--------~~~~~~~~~~~~~~l~~dl~~ 737 (1335)
|||||+++|+|+++|++|+|.+++ +++|+||+|+++++|++|||.++.. ..+++.+++++.+++.+.++.
T Consensus 490 GKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~ 569 (659)
T TIGR00954 490 GKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER 569 (659)
T ss_pred CHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh
Confidence 999999999999999999999865 6899999999999999999998742 344566788888899877766
Q ss_pred CCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc
Q 000713 738 LPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817 (1335)
Q Consensus 738 l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~ 817 (1335)
|.|.+|..+ .+.+||||||||++||||++++|+++|||||||+||+++.+.+.+.+.+ .|+|+|+|||+++.++.
T Consensus 570 -~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~ 644 (659)
T TIGR00954 570 -EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY 644 (659)
T ss_pred -cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence 888888876 5789999999999999999999999999999999999999988875543 38999999999999999
Q ss_pred CCeEEEEeC
Q 000713 818 FDSVLLMSD 826 (1335)
Q Consensus 818 ~D~iivl~~ 826 (1335)
||++++|++
T Consensus 645 ~d~il~l~~ 653 (659)
T TIGR00954 645 HEYLLYMDG 653 (659)
T ss_pred CCEEEEEeC
Confidence 999999973
No 45
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-48 Score=499.46 Aligned_cols=473 Identities=20% Similarity=0.263 Sum_probs=371.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 373 FRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPF-WFHQIWTTSVQLCIALIILFHAVGL 451 (1335)
Q Consensus 373 ~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~-~~h~~w~~plqi~lal~lL~~~lG~ 451 (1335)
+.....|++.-..|-..++++.+|-+..-.+...+|.|+|..|.|++.+++..+ .+..+....++++.++.+.-....+
T Consensus 880 ~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~ 959 (1381)
T KOG0054|consen 880 FLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPW 959 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 334456777777788888888888877777788999999999999999997654 4555555666666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 452 ATIAALVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQL 531 (1335)
Q Consensus 452 a~l~gl~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~ 531 (1335)
..++.+.+.++++.++.+..+-.+..++--...+.-=....+|.++|+-+|+.|+.|+.|.++-...-+.-.+. ..+
T Consensus 960 fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~---~f~ 1036 (1381)
T KOG0054|consen 960 FLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRA---FFL 1036 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHH---HHH
Confidence 66666666666677777776666777766667778888999999999999999999999998876644432221 111
Q ss_pred HHHHHhHHHh----HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000713 532 RKAYNGFLFW----SSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA 607 (1335)
Q Consensus 532 ~~a~~~~~~~----~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~ 607 (1335)
..+.+-.+.. ..-.++..+++.+....++..+|+.|=-+++.--.+..-+..+-.....+-.-.+|++||.+|.+.
T Consensus 1037 ~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~ 1116 (1381)
T KOG0054|consen 1037 SISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDI 1116 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcC
Confidence 1111111111 111122222222222222227788887777766666677777777777788889999999999985
Q ss_pred CCCCccccc--ccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 608 PELQSMNIR--QKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 608 ~e~~~~~~~--~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
|+..+...+ +.|..=+.++.|+++|++.+|.++ ..++||||||+|++||++||||++|||||||+++|-++.+|.+|
T Consensus 1117 ~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G 1195 (1381)
T KOG0054|consen 1117 PSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG 1195 (1381)
T ss_pred CCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC
Confidence 433222111 122222367889999999999765 35899999999999999999999999999999999999999999
Q ss_pred EEEEcC-------------eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 686 TIQVYG-------------KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 686 ~i~v~g-------------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|.+|| +++.+||+|.+|+||+|.|+.--.++.+++..++++.|+|.+.+..+|.|.++++.|+|.|
T Consensus 1196 ~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1196 EILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred eEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 999998 4699999999999999999998788889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
+|-||||-++|||||+++++|++|||+|+++|++|- .+.++.++..-+++|||.+.|+++.+-.+|||+||++|+|+|.
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD-~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETD-ALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHH-HHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999995 5567778888889999999999999999999999999999999
Q ss_pred cChHHHHhcc-hHHHHHHH
Q 000713 833 APYHQLLASS-KEFQELVS 850 (1335)
Q Consensus 833 g~~~~l~~~~-~~~~~l~~ 850 (1335)
|+|++|+++. ..|.+++.
T Consensus 1355 dsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1355 DSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred CChHHHHhCCcchHHHHHH
Confidence 9999999764 44544443
No 46
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-48 Score=464.49 Aligned_cols=361 Identities=24% Similarity=0.342 Sum_probs=295.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
.....+..++.++++++.++|.+++.+.+.+...+++..++++++|+.++|||.|.+|.|+||+++|...+-..++..+.
T Consensus 188 ~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls 267 (716)
T KOG0058|consen 188 KRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLS 267 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHH
Confidence 34566677788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhc
Q 000713 1036 FAVGATTNACSNLGVLAVVTWQVLFVSI---P-VIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAF 1111 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~~~~~~~~~~~i---p-l~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf 1111 (1335)
..+.+.++.++.++.|++.+|.+.++.. | ++.+..++.+||.+.+|+.+ .+-+...+...|.+++++|||+|
T Consensus 268 ~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q----~a~A~a~~vaeE~ls~~rTVRsf 343 (716)
T KOG0058|consen 268 DGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQ----DALARANQVAEEVLSAMRTVRSF 343 (716)
T ss_pred HHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhHHHh
Confidence 9999999999999999999999875433 3 33445556666666666654 45666778899999999999999
Q ss_pred ccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHH
Q 000713 1112 EEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVM 1190 (1335)
Q Consensus 1112 ~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~ 1190 (1335)
+.|++=.+++.+.++.-.+-.-....+.--+.-..++.+++....+.+ ...+...|.+++|.+--.+.|...+...+.+
T Consensus 344 a~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ 423 (716)
T KOG0058|consen 344 AAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSG 423 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHH
Confidence 999866666655555433322211111122222334555544433322 2333446789999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEe--CCCCCCccccceEEeeCCcEEE
Q 000713 1191 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRY--RPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1191 ~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY--~~~~~~VLk~is~~I~~GekVG 1268 (1335)
+...++++-+.+.|.||++||++.+|.-+.. +. ..|. .-+|.|+|+||+|.| ||+. +||||+||+|+|||.||
T Consensus 424 ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~--G~-~~p~-~~~G~IeF~~VsFaYP~Rp~~-~Vlk~lsfti~pGe~vA 498 (716)
T KOG0058|consen 424 LSSFYSELMKGVGASERVFELMDRKPRIPLT--GT-LAPD-HLQGVIEFEDVSFAYPTRPDV-PVLKNLSFTIRPGEVVA 498 (716)
T ss_pred HHHHHHHHHHhcchHHHHHHHhccCCCCCCC--Cc-cccc-cccceEEEEEeeeecCCCCCc-hhhcCceeeeCCCCEEE
Confidence 9999999999999999999999876654432 21 2233 578999999999999 5555 49999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+|||+||||||++++|.|+|||++|+|++||+||+. |+++++|.|||+||+|||+||
T Consensus 499 LVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eN 561 (716)
T KOG0058|consen 499 LVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIREN 561 (716)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHH
Confidence 999999999999999999999999999999999996 568999999999999999998
No 47
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-47 Score=428.63 Aligned_cols=459 Identities=22% Similarity=0.319 Sum_probs=350.2
Q ss_pred HHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 385 LLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFW-FHQIWTTSVQLCIALIILFHAVGLATIAALVVITIT 463 (1335)
Q Consensus 385 ~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~-~h~~w~~plqi~lal~lL~~~lG~a~l~gl~v~vl~ 463 (1335)
.+....|+..++||-.-..+..+|.+---|..-..-++.+.++ +..+-...+++.+..+++|+..||...+..++++++
T Consensus 16 ~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~l 95 (497)
T COG5265 16 VLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVIL 95 (497)
T ss_pred HHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 4455567777777765444445555443333333345554443 333444568999999999999998655554444444
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 000713 464 VLCNTP-LAKLQHKFQTKLMVAQDE-RLKACSEAFVNMKVLKLYAWETHFKNAIEI----LRNVEYKWLSAVQLRKAYNG 537 (1335)
Q Consensus 464 ~~~~~~-~~~~~~~~q~~~m~~~D~-R~~~~sEiL~~ik~IKl~awE~~f~~~I~~----~R~~El~~l~~~~~~~a~~~ 537 (1335)
..+-.+ ....-..+++ .|+..|. --....+.|-+-.++|.|+=|+.+..+..+ .++.+++......++.....
T Consensus 96 Y~~ftv~~s~wr~~~rr-~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~ 174 (497)
T COG5265 96 YLLFTVIVSDWRTDFRR-LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQT 174 (497)
T ss_pred HHHhheeehhhhHHHHH-hhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 443333 3333334444 4544454 445677889999999999999988777654 33344443333333333333
Q ss_pred HHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc
Q 000713 538 FLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQ 617 (1335)
Q Consensus 538 ~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~ 617 (1335)
.++... +....+.+..-+..+.+|.+...-.-++...+..|++.+......+-|++...++..+-+..+-...+...-
T Consensus 175 ~I~~~~--l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda 252 (497)
T COG5265 175 AIFSTG--LRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDA 252 (497)
T ss_pred HHHHHH--HHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCC
Confidence 332211 222233344445568899999999999999999999999999999999999999999888754322221111
Q ss_pred cCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----
Q 000713 618 KGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----- 692 (1335)
Q Consensus 618 ~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----- 692 (1335)
++-.....+.+.++|++|.|++ .+++|+++||++++|+.++|+||+|+||||+++.|.+++++.+|.|.++|+
T Consensus 253 ~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v 330 (497)
T COG5265 253 PPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV 330 (497)
T ss_pred ccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh
Confidence 1111013457999999999975 468999999999999999999999999999999999999999999999995
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
||.|||+..+||.|+..||.+|++. .++....+.++.++.+.++.+|+|.+|.+||+|-.||||+||||++
T Consensus 331 tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvai 410 (497)
T COG5265 331 TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAI 410 (497)
T ss_pred HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHH
Confidence 6999999999999999999999874 4556677888889999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
||+++.+|+|++|||.|||||.|+.+.|-. .++...+|+|.+++.|+++.+-.||+|+||+||+|+|.|+++||+..++
T Consensus 411 ar~ilk~p~il~~deatsaldt~te~~iq~-~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g 489 (497)
T COG5265 411 ARTILKNPPILILDEATSALDTHTEQAIQA-ALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGG 489 (497)
T ss_pred HHHHhcCCCEEEEehhhhHhhhhHHHHHHH-HHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCC
Confidence 999999999999999999999999988855 4455668999999999999999999999999999999999999999988
Q ss_pred HHHHHH
Q 000713 844 EFQELV 849 (1335)
Q Consensus 844 ~~~~l~ 849 (1335)
.+.++.
T Consensus 490 ~ya~mw 495 (497)
T COG5265 490 LYAEMW 495 (497)
T ss_pred hHHHHh
Confidence 887764
No 48
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=9.3e-45 Score=488.91 Aligned_cols=190 Identities=23% Similarity=0.309 Sum_probs=154.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC----CCCCcEEEEcCe------------EEEEecCCcC-CCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV----PHTQGTIQVYGK------------TAYVSQTAWI-QTG 705 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~----~~~~G~i~v~g~------------~ayv~Q~~~i-~~~ 705 (1335)
+++|+|+|+++++||+++|+|||||||||||++|+|.. +|++|+|.++|. ++|++|++.+ .+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46899999999999999999999999999999999986 468999999873 7999998755 467
Q ss_pred CHHHHhccCCC----------CChHHHH-----HHHHHhccHHHHhhCCCCCCccccC-CCCCCCHHHHHHHHHHHHHcc
Q 000713 706 SIRENILFGSP----------MDSHQYQ-----ETLERCSLIKDLELLPYGDNTEIGE-RGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 706 Tv~eNIlfg~~----------~~~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARAl~~ 769 (1335)
||+||+.|+.. ..++.+. .+++..+| .+--+|.+|+ ....|||||||||+||||++.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 99999988521 1122211 12222222 2223456654 466899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCC-cc-ccCCeEEEEeCCeEEEecChHHHH
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVD-FL-PAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~-~l-~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. .+ ..+|+|++|++|+++..|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999987766554 4899999999974 44 458999999999999999998874
No 49
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-45 Score=453.57 Aligned_cols=200 Identities=27% Similarity=0.416 Sum_probs=162.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC--CCcEEEEcCe-----------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYGK----------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~--~~G~i~v~g~----------- 692 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 4 ~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 46999999999963 4799999999999999999999999999999999999996 8999999872
Q ss_pred ---EEEEecCCcCC-CCCHHHHhccCCCC------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ---TAYVSQTAWIQ-TGSIRENILFGSPM------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ---~ayv~Q~~~i~-~~Tv~eNIlfg~~~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++ +.|++||+.++... +.+...+.+ .+-++.+... .....+..+||||||||++
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~--~~~~~~~~~LSgGqkqrv~ 153 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRA-----QKLLAQLKLD--INPATPVGNLGLGQQQLVE 153 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHH-----HHHHHHcCCC--CCcccchhhCCHHHHHHHH
Confidence 79999998665 56999999986432 111111111 1112222211 1234567899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++.+|+++||||||++||+..+..+.+.+.+...+|+|+|++|||++++.. ||+|++|++|++++.|+.
T Consensus 154 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 154 IAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 9999999999999999999999999999998766655568999999999999864 899999999999877653
No 50
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-45 Score=454.43 Aligned_cols=198 Identities=25% Similarity=0.367 Sum_probs=163.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 46899999999963 4699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCCC----------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSPM----------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~~----------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++ +.|++||+.++... +.. +..+.++.+++ . ...+.+..+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---------~--~~~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL---------K--VDLDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC---------C--CCcccchhhCCHH
Confidence 279999998665 56999999875320 111 11122222222 1 1234567799999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
|||||+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|+++..|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 999999999999999999999999999999999999877665556899999999999986 5899999999999887765
Q ss_pred HH
Q 000713 836 HQ 837 (1335)
Q Consensus 836 ~~ 837 (1335)
++
T Consensus 230 ~~ 231 (510)
T PRK09700 230 SD 231 (510)
T ss_pred hh
Confidence 54
No 51
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-45 Score=461.07 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=167.7
Q ss_pred cccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 625 NRAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
+..|+++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 35799999999996422 24799999999999999999999999999999999999999999998754
Q ss_pred ---------------eEEEEecCC--cC-CCCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCcc
Q 000713 692 ---------------KTAYVSQTA--WI-QTGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTE 745 (1335)
Q Consensus 692 ---------------~~ayv~Q~~--~i-~~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ 745 (1335)
++|||+|+| .+ ...||+||+.++.. .+.. +..++++..++. .. ...
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~-------~~-~~~ 161 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIP-------EA-QTI 161 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCC-------Ch-hhH
Confidence 379999998 34 45799999987532 1221 222233333321 00 123
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iiv 823 (1335)
..+++.+|||||||||+||||++.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++. .||+|++
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~v 241 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLV 241 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEE
Confidence 45678899999999999999999999999999999999999999998866655444 899999999999876 5899999
Q ss_pred EeCCeEEEecChHHHH
Q 000713 824 MSDGEILRAAPYHQLL 839 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~ 839 (1335)
|++|++++.|+++++.
T Consensus 242 l~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 242 MYQGEAVETGSVEQIF 257 (623)
T ss_pred eeCCeecccCCHHHhh
Confidence 9999999999887764
No 52
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=9e-45 Score=451.54 Aligned_cols=205 Identities=22% Similarity=0.385 Sum_probs=164.0
Q ss_pred ccEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 626 RAISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
..++++|++++|++. ..+++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 369999999999632 124799999999999999999999999999999999999986 799998865
Q ss_pred ---------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 692 ---------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 692 ---------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+++|++|++. + ...|++||+.++. ..+. ++.+++++.+++.+.. ....++..
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPH 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCc
Confidence 3799999974 3 3469999986421 1111 1223334444332100 11245678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEI 829 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i 829 (1335)
+|||||||||+||||++.+|+++||||||++||+..++.+.+.+.+... .|+|+|+||||++.+. .||+|++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999886665444 3899999999999986 4899999999999
Q ss_pred EEecChHHH
Q 000713 830 LRAAPYHQL 838 (1335)
Q Consensus 830 ~~~g~~~~l 838 (1335)
++.|+++++
T Consensus 236 ~~~g~~~~~ 244 (529)
T PRK15134 236 VEQNRAATL 244 (529)
T ss_pred EEeCCHHHH
Confidence 998877655
No 53
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1e-44 Score=430.79 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~----~G~i~v~g--------- 691 (1335)
..++++|++..|...++ .++++||||+|.+||.+||+|++||||||+.++|+|++++. +|+|.++|
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 37999999999976533 25899999999999999999999999999999999999987 89999887
Q ss_pred --------eEEEEecCCcC---CCCCHHHHhcc----CCCC-ChHHHH---HHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 --------KTAYVSQTAWI---QTGSIRENILF----GSPM-DSHQYQ---ETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 --------~~ayv~Q~~~i---~~~Tv~eNIlf----g~~~-~~~~~~---~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
++||+||+|+- +-.||.+.|.= .... .++..+ +.++..++ |+.... +..+++
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl-------~~~~~~--~~yPhe 154 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGL-------PDPERR--DRYPHQ 154 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCC-------CChhhh--ccCCcc
Confidence 37999999852 33588777642 2222 122222 23333333 222211 568999
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
|||||||||.||+||..+|+++|+||||+|||+.++.+|.+.+.+.. ..|.++|+||||+..+.+ ||+|+||++|+++
T Consensus 155 LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 155 LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIV 234 (539)
T ss_pred cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999998776554 469999999999999875 8999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
|.|+.++++++
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999764
No 54
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-45 Score=426.88 Aligned_cols=263 Identities=21% Similarity=0.323 Sum_probs=220.5
Q ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccCCCCCCcccEEEEeeEEEecC
Q 000713 560 VPLYASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQSMNIRQKGNIENVNRAISIKSASFSWEE 639 (1335)
Q Consensus 560 ~~Lt~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 639 (1335)
++++|+++|+++++|+.++.|+..+|..... .+|+.+|+..+|.+...+... .+.++.|+++|++++|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~nls~~y~~ 92 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKED---FNHANVFEIRNFNFWYMN 92 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCC---CCcCceEEEEeeEEEecC
Confidence 5689999999999999999999988865443 579999998776543221111 114568999999999964
Q ss_pred CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------------eEEEEecC
Q 000713 640 SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG---------------KTAYVSQT 699 (1335)
Q Consensus 640 ~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g---------------~~ayv~Q~ 699 (1335)
. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++| +++|+||+
T Consensus 93 ~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~ 171 (329)
T PRK14257 93 R-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171 (329)
T ss_pred C-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 2 3579999999999999999999999999999999999996 5799998765 47999999
Q ss_pred CcCCCCCHHHHhccCCCCC----hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 700 AWIQTGSIRENILFGSPMD----SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 700 ~~i~~~Tv~eNIlfg~~~~----~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
||++++|++|||.|+..++ ++ .++++++.|++.+++ ++.+++++.+||||||||++||||++++|
T Consensus 172 ~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l-------~~~~~~~~~~LSgGqkqRl~LARAl~~~p 244 (329)
T PRK14257 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEV-------KDDLDKAGNALSGGQQQRLCIARAIALEP 244 (329)
T ss_pred CccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchh-------hhhhhCCcccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999864322 22 256677777775544 35678999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+|+||||||+|||+++.+++.+ ++....+++|+|+|||+++++.. ||+|++|++|+|++.|+++++...
T Consensus 245 ~IlLLDEPts~LD~~~~~~i~~-~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 245 EVLLMDEPTSALDPIATAKIEE-LILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred CEEEEeCCcccCCHHHHHHHHH-HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999988655 55555668999999999999877 899999999999999999998754
No 55
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=7.4e-44 Score=445.11 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=163.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..|+++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 47999999999962 25799999999999999999999999999999999999999999999864 699999999876
Q ss_pred C-CCHHHHhccCCC-CC---------------h-H-------HHHHHHHHh----------ccHHHHhhCCCCCCccccC
Q 000713 704 T-GSIRENILFGSP-MD---------------S-H-------QYQETLERC----------SLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 704 ~-~Tv~eNIlfg~~-~~---------------~-~-------~~~~~~~~~----------~l~~dl~~l~~gd~t~ig~ 748 (1335)
+ .|++||+.++.. +. . . .+.+..+.+ ...+.++.+... ....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP---PWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC---cccC
Confidence 4 599999987521 00 0 0 000000000 011112222221 1356
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
+..+|||||||||+||||++.+|+++||||||++||+.+.+++.+.+.+ . +.|+|+||||++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~-~--~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 7789999999999999999999999999999999999999988865443 2 3599999999999875 7999999999
Q ss_pred eEE-EecChHHHHh
Q 000713 828 EIL-RAAPYHQLLA 840 (1335)
Q Consensus 828 ~i~-~~g~~~~l~~ 840 (1335)
+++ ..|+++++.+
T Consensus 237 ~i~~~~g~~~~~~~ 250 (556)
T PRK11819 237 RGIPWEGNYSSWLE 250 (556)
T ss_pred EEEEecCCHHHHHH
Confidence 986 7888887653
No 56
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-45 Score=384.05 Aligned_cols=202 Identities=32% Similarity=0.480 Sum_probs=175.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.|+++|++++|++ ..+|+|||++|++||.++|+|||||||||||+||.|+.+|++|+|.++|.
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999974 57999999999999999999999999999999999999999999999992
Q ss_pred EEEEecCCcCC-CCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|+|+|+..+| ..|+.||+..+. ...+ ++..+.++..+|.+..+ ..+.+|||||||||+|
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~-----------~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKAD-----------AYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh-----------hCccccCcHHHHHHHH
Confidence 68999998876 679999999863 1222 22333444555544433 4567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||||+.+|+++|+|||||||||+...++.+-+.+....|.|.|+|||++.|+.. +|||+.|++|+|+++|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999998777778889999999999999987 6999999999999999999998654
No 57
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-44 Score=442.51 Aligned_cols=207 Identities=19% Similarity=0.315 Sum_probs=161.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC-
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ- 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~- 703 (1335)
+|+++|++++|++ +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++| +++|++|++.++
T Consensus 1 ml~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFE 77 (530)
T ss_pred CEEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCC
Confidence 3789999999963 4799999999999999999999999999999999999999999999986 689999997654
Q ss_pred CCCHHHHhccCCC-CC-------------------hHHHHHHHH----------HhccHHHHhhCCCCCCccccCCCCCC
Q 000713 704 TGSIRENILFGSP-MD-------------------SHQYQETLE----------RCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-~~-------------------~~~~~~~~~----------~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
+.|++||+.++.. .. ...+.+..+ .....+-++.+...+ ........+|
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~~~~~~~~L 156 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPE-EQHYGLMSEV 156 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCh-hHhcCchhhc
Confidence 5699999987531 00 000000000 000111122222111 0112456799
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE-EE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI-LR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i-~~ 831 (1335)
||||||||+||||++.+|+++||||||++||+.+++.+.+.+. ..|+|||+||||++++.. ||+|++|++|++ ++
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~ 233 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---ERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---hCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998887553 258999999999999865 899999999999 47
Q ss_pred ecChHHHHh
Q 000713 832 AAPYHQLLA 840 (1335)
Q Consensus 832 ~g~~~~l~~ 840 (1335)
.|+++++.+
T Consensus 234 ~g~~~~~~~ 242 (530)
T PRK15064 234 PGNYDEYMT 242 (530)
T ss_pred cCCHHHHHH
Confidence 899988753
No 58
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.9e-44 Score=443.34 Aligned_cols=200 Identities=27% Similarity=0.437 Sum_probs=158.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC--CCcEEEEcC--------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH--TQGTIQVYG-------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~--~~G~i~v~g-------------- 691 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 799999987
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCCCC--h--HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSPMD--S--HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~~~--~--~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|++|++.++ +.|++||+.++.... . ...++..+. ..+-++.+...+. .......+|||||||||+||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~~~-~~~~~~~~LSgG~~qrv~iA~a 155 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLR--AKNLLRELQLDAD-NVTRPVGDYGGGQQQLVEIAKA 155 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHH--HHHHHHHcCCCCC-cccCchhhCCHHHHHHHHHHHH
Confidence 279999998665 569999998864321 0 001111111 1111222211110 0123467899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..|
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 156 LNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 999999999999999999999999998766655668999999999999865 8999999999997654
No 59
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=3.7e-44 Score=443.21 Aligned_cols=199 Identities=23% Similarity=0.340 Sum_probs=161.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC-------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM-------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++ +.|++||+.++... +....++.+ .+-++.+...+ ....+..+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~--~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEA-----DKLLARLNLRF--SSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHH-----HHHHHHcCCCC--CccCchhhCCHHHHHHHHHH
Confidence 79999998654 56999999986432 111111111 11122222211 23456779999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 9999999999999999999999999998766655556899999999999986 4899999999999876543
No 60
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=7.2e-44 Score=441.10 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=168.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
...|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 85 (510)
T PRK15439 9 PPLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQ 85 (510)
T ss_pred CceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 346999999999963 4699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCCCCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSPMDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++|++|++.++ +.|++||+.++..... ++.++.++..++. .....+..+|||||||||+||||
T Consensus 86 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 86 LGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----------LDLDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred CCEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-----------ccccCChhhCCHHHHHHHHHHHH
Confidence 278999998765 5699999998753221 2223333333332 12345677999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++.+|+++||||||++||+..++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+++++
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999999877665556899999999999886 5899999999999988877664
No 61
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.6e-44 Score=444.53 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=159.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEc---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVY--------------- 690 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~--------------- 690 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999953 47999999999999999999999999999999999997 7999999885
Q ss_pred --------C-----------------------eEEEEecC-CcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhc
Q 000713 691 --------G-----------------------KTAYVSQT-AWIQ-TGSIRENILFGSP---MDS----HQYQETLERCS 730 (1335)
Q Consensus 691 --------g-----------------------~~ayv~Q~-~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~ 730 (1335)
| .++|++|+ +.++ ..|++||+.++.. .+. ++..++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 1 27999997 4444 5699999987421 211 12333444444
Q ss_pred cHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEc
Q 000713 731 LIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVT 809 (1335)
Q Consensus 731 l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvT 809 (1335)
+.+. ..++..+|||||||||+||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|||+||
T Consensus 158 l~~~-----------~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHR-----------ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhh-----------hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 4322 2356778999999999999999999999999999999999999999887666544 489999999
Q ss_pred cCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 810 HQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 810 H~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++++. .||+|++|++|+++..|+++
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~ 254 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPD 254 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHH
Confidence 9999986 48999999999998766543
No 62
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.4e-44 Score=440.32 Aligned_cols=197 Identities=23% Similarity=0.310 Sum_probs=165.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 5899999999963 46999999999999999999999999999999999999999999998762 6
Q ss_pred EEEecCCcC---------CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAWI---------QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~i---------~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++.. +..|++||+.++.. +.++.++.++..++.+. .+.+..+||||||||++||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVK-DPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccchh-HHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHH
Confidence 899998642 14689999876521 23344555555555322 2346678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
||++.+|+++||||||++||+..++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 222 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEI 222 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999998776655568999999999998865 899999999999988876654
No 63
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-43 Score=440.69 Aligned_cols=207 Identities=27% Similarity=0.374 Sum_probs=165.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..++++|++++|++ ++++|+|+||+|++|++++|+|||||||||||++|+|+.+|++|+|.+++ +++|++|+|+++
T Consensus 3 ~~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 80 (552)
T TIGR03719 3 YIYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLD 80 (552)
T ss_pred EEEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCC
Confidence 36899999999962 24799999999999999999999999999999999999999999999975 699999999876
Q ss_pred -CCCHHHHhccCCCC------------------Ch---------HHHHHHHHHhccH-------HHHhhCCCCCCccccC
Q 000713 704 -TGSIRENILFGSPM------------------DS---------HQYQETLERCSLI-------KDLELLPYGDNTEIGE 748 (1335)
Q Consensus 704 -~~Tv~eNIlfg~~~------------------~~---------~~~~~~~~~~~l~-------~dl~~l~~gd~t~ig~ 748 (1335)
+.|++||+.++... +. .++.+.++.++.. +-++.+... ....
T Consensus 81 ~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~ 157 (552)
T TIGR03719 81 PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP---PWDA 157 (552)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC---cccC
Confidence 56999999875310 01 1122233333321 112222221 1356
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
+..+|||||||||+||||++.+|+++||||||++||+++.+++.+.+.+ . +.|+|+||||++++.. ||+|++|++|
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~-~--~~tvIiisHd~~~~~~~~d~v~~l~~g 234 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE-Y--PGTVVAVTHDRYFLDNVAGWILELDRG 234 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHhhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999988875443 2 3699999999999875 7999999999
Q ss_pred eEE-EecChHHHHh
Q 000713 828 EIL-RAAPYHQLLA 840 (1335)
Q Consensus 828 ~i~-~~g~~~~l~~ 840 (1335)
+++ ..|+++++.+
T Consensus 235 ~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 235 RGIPWEGNYSSWLE 248 (552)
T ss_pred EEEEecCCHHHHHH
Confidence 976 6798888754
No 64
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=6.9e-42 Score=438.58 Aligned_cols=362 Identities=19% Similarity=0.254 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
.+.+++++.++..++.+++...+...+.+...+++.++++++++.|++||+++++|+++||+++|++.++..+...+..+
T Consensus 203 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~ 282 (711)
T TIGR00958 203 AIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVL 282 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++...+.+.+.+..+++.+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 283 l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~ 362 (711)
T TIGR00958 283 LRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGE 362 (711)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHH
Confidence 99999999999999999999876655444444444444444444444444456667789999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHS---FAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQN 1194 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~---~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~ 1194 (1335)
.+++.+..|+..+..... .....|....+..+..+++....... ...|.+++|.+...+.|...+...+..+...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~l--v~~g~it~G~lva~~~~~~~l~~~l~~l~~~ 440 (711)
T TIGR00958 363 ASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQL--VLTGKVSSGNLVSFLLYQEQLGEAVRVLSYV 440 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888776654433 22334443333333333322222222 2357899999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCC
Q 000713 1195 QCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1195 ~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
+.++.+...+.||+.+|.+.++|.+.. . ....+|..|.|+|+||+|+|+.+ .++||+|+||+|+|||+|||||+|
T Consensus 441 ~~~~~~~~~a~~ri~~~l~~~~~~~~~--~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 516 (711)
T TIGR00958 441 YSGMMQAVGASEKVFEYLDRKPNIPLT--G--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPS 516 (711)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC--C--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCC
Confidence 999999999999999999876554321 1 11224567899999999999643 347999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||||+++|.|+++|++|+|.|||+|++. ++++++|||||.||+||||||
T Consensus 517 GsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreN 574 (711)
T TIGR00958 517 GSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVREN 574 (711)
T ss_pred CCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHH
Confidence 9999999999999999999999999999985 458999999999999999998
No 65
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-44 Score=439.58 Aligned_cols=196 Identities=25% Similarity=0.375 Sum_probs=158.6
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------EEE
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------TAY 695 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ay 695 (1335)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3688999963 46999999999999999999999999999999999999999999999872 799
Q ss_pred EecCCcCC-CCCHHHHhccCCC-C-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP-M-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++.++ +.|++||+.++.. . +.....+.. .+-++.+.. ......++.+|||||||||+||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99998654 5799999987632 1 111111111 111222211 12234567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|+.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 999999999999999999999998876665556899999999999886 5899999999999876654
No 66
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-43 Score=437.88 Aligned_cols=192 Identities=27% Similarity=0.420 Sum_probs=160.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 6899999999963 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCC------CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSP------MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++.++. .|++||+.++.. .+.. +..+.++.+++ . .....++.+||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---------~--~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGV---------D--IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCC---------C--CCcCCchhhCCHHHHHHH
Confidence 799999987654 699999998632 1111 12222232222 1 123456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+++..
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999988776655568999999999998864 899999999999753
No 67
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.2e-40 Score=447.03 Aligned_cols=202 Identities=26% Similarity=0.390 Sum_probs=170.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------E
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------T 693 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ 693 (1335)
..|+++|+++.|+++ ++++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. +
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 469999999999632 357999999999999999999999999999999999999999999999883 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
|||||++.++ ..|++||+.|+.. ... ++.++.++..+|.+ ..+++..+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~-----------~~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH-----------KRNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 9999998765 5699999987532 111 12233344433321 234677899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++.+|+++||||||||||+..++++++.+.+. .+|+|+|++||+++.+.. +|+|++|++|+++..|+.+++.+
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l-~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999876655 469999999999999864 89999999999999999998864
No 68
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.1e-41 Score=422.09 Aligned_cols=359 Identities=18% Similarity=0.180 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHH
Q 000713 965 IGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNA 1044 (1335)
Q Consensus 965 l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~ 1044 (1335)
+.++..++.++..+.....+.+...+++.++++++++.|.+||+++++|+++||+++|++.++..+...+..++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~ 141 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVG 141 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777778888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHH
Q 000713 1045 CSNLGVLAVVTWQVLFVSIPVIFLAI-RLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLD 1123 (1335)
Q Consensus 1045 ~~~l~vi~~~~~~~~~~~ipl~~~~~-~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~ 1123 (1335)
++.++++++.+|.+.++++..++++. ....++.+..++..+......+...+++.|+++|+.+||+|+.|+++.+++.+
T Consensus 142 ~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 221 (529)
T TIGR02868 142 SAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEA 221 (529)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHH
Confidence 99999999999998876654443333 33344444455555555567788999999999999999999999999999999
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000713 1124 LIDTNASPFFHSFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYI 1202 (1335)
Q Consensus 1124 ~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~-~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~ 1202 (1335)
..+...+........+.+...-..++..+....+. +.......|.++.|.+...+.|+..+...+..+...+.++.+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (529)
T TIGR02868 222 ADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVR 301 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877776655444444333333333333222221 22222335778999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHH
Q 000713 1203 ISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRG 1282 (1335)
Q Consensus 1203 ~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~ 1282 (1335)
.|.+|+.++.+.|+|.+... ...+.+.+|..|.|+|+||+|+|+++. +||+|+||+|+|||||||||+||||||||++
T Consensus 302 ~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~~~I~~~~vsf~Y~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~ 379 (529)
T TIGR02868 302 AAAERIEEVTGAKGPRPEGV-VPAAGALGLGKPTLELRDLSFGYPGSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLM 379 (529)
T ss_pred HHHHHHHHHhcCCCCcCCCC-CCCCcccCCCCceEEEEEEEEecCCCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999998766543211 111122345678899999999997554 5999999999999999999999999999999
Q ss_pred HHhhccCCCCCeEEECCeecCC-----cCCCceeecccccccccHHhh
Q 000713 1283 ALFRLIEPARGKILVDGKLAEY-----DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1283 aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+|.|+++|++|+|.|||+|++. ++++++|||||+||+||||||
T Consensus 380 lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 380 LLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred HHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 9999999999999999999984 568999999999999999998
No 69
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-40 Score=415.91 Aligned_cols=397 Identities=22% Similarity=0.290 Sum_probs=323.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccC----CCcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 926 ASLSHLTFVIGQILQNSWLAANVEN----PNVSTLRL-IVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLF 1000 (1335)
Q Consensus 926 ~~~~~~~~~~~~~~~~~wl~w~~~~----~~~~~~~~-~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il 1000 (1335)
+++..++.+++.+++.+...+-.|. ...++..+ ...+++.++...++.++|.+.+...+-+....+-.+.+++++
T Consensus 159 v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll 238 (709)
T COG2274 159 VLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLL 238 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3344455556666666665532221 22233333 344556678888999999999999999999999999999999
Q ss_pred cCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000713 1001 RAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTA 1080 (1335)
Q Consensus 1001 ~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~ts 1080 (1335)
+.|++||.+.++|.+++|++ |++.|...+...+...+..++.++..+++|.+.+|+++++.+..++++..+.-...+.-
T Consensus 239 ~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l 317 (709)
T COG2274 239 RLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLL 317 (709)
T ss_pred cCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 88899999999888888888888899999999999988765544444443333333333
Q ss_pred HHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1081 KELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC 1160 (1335)
Q Consensus 1081 rel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~ 1160 (1335)
|+..|-.....+-..++..|++.|+.||++.+.|++|..+..++.++..+..+...-...|...-..++..+..+.+..+
T Consensus 318 ~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~ 397 (709)
T COG2274 318 RRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWF 397 (709)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344455667789999999999999999999999999999999999988888888887777777665544433332
Q ss_pred -HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEE
Q 000713 1161 -MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDI 1239 (1335)
Q Consensus 1161 -~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f 1239 (1335)
+.....+.++.|.+=...+.+-.+++.+..++..+.++...-.+.||+.+..+.|+|.+. +..+...|+-+|+|+|
T Consensus 398 G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~---~~~~~~~~~~~g~I~~ 474 (709)
T COG2274 398 GAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG---DKTLIHLPKLQGEIEF 474 (709)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccccccccccCceEEE
Confidence 233336788999888888899999999999999999999999999999999999888642 2225566788999999
Q ss_pred EEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeec
Q 000713 1240 CDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKR 1313 (1335)
Q Consensus 1240 ~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Q 1313 (1335)
+||+|+|+++.|+||+|+|++|+|||+||||||+|||||||++.|.|+|+|++|+|.+||+|++. |+++++|+|
T Consensus 475 ~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q 554 (709)
T COG2274 475 ENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554 (709)
T ss_pred EEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcc
Confidence 99999999998999999999999999999999999999999999999999999999999999985 678999999
Q ss_pred ccccccccHHhhH
Q 000713 1314 EGSLFGQLVKEYW 1326 (1335)
Q Consensus 1314 ep~LFsGTIrE~~ 1326 (1335)
|++||+||||||.
T Consensus 555 ~~~Lf~gSI~eNi 567 (709)
T COG2274 555 DPFLFSGSIRENI 567 (709)
T ss_pred cchhhcCcHHHHH
Confidence 9999999999973
No 70
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.3e-40 Score=424.48 Aligned_cols=411 Identities=19% Similarity=0.188 Sum_probs=306.1
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHhhhc-ccc---CCCcch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 906 GLKPYIQYLNQNKGFLFFSIASLSHLTFVIGQILQNSWLAA-NVE---NPNVST-LRLIVVYLLIGFVSTLFLMSRSLSS 980 (1335)
Q Consensus 906 ~~~~y~~Y~~~~~g~~~~~~~~~~~~~~~~~~~~~~~wl~w-~~~---~~~~~~-~~~~~vy~~l~~~~~~~~~~~~~~~ 980 (1335)
+++.++.|++....... .++++.++..+..++..+++.. -+. +...+. ..+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIV--NIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677765443322 2233333444444445555442 111 111111 1223344455566777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 981 VVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLF 1060 (1335)
Q Consensus 981 ~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~ 1060 (1335)
...+.+...+++.++++++++.|++||++.++|++++|++ |.+.+-..+...+...+..++.++..++++++.+|++.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 299 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999998 888887777766666667777777777788888888776
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHH
Q 000713 1061 VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANE 1140 (1335)
Q Consensus 1061 ~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~ 1140 (1335)
+++..++++..+...+.+..++..+-.....+...+++.|+++|+.|||+|+.|+++.+++.+..++..+..+.......
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544444444444444445555555556677888999999999999999999999999988887776666554433332
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCC
Q 000713 1141 ---WLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSE 1217 (1335)
Q Consensus 1141 ---Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E 1217 (1335)
++...+..++.++++..+...+ ..|.++.|.+-.+.+|...+...+..+...+.++.....++||+.++.+.|+|
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv--~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLV--MRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 2222233333332222222222 36789999999999999999999999999999999999999999999988777
Q ss_pred CCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEE
Q 000713 1218 APEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILV 1297 (1335)
Q Consensus 1218 ~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~I 1297 (1335)
.+.. ..+.+.++..|.|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+++|.|+++|++|+|+|
T Consensus 458 ~~~~---~~~~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~i 533 (708)
T TIGR01193 458 FINK---KKRTELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 (708)
T ss_pred cccc---ccccCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEE
Confidence 5421 1112235567899999999999644 56999999999999999999999999999999999999999999999
Q ss_pred CCeecCC------cCCCceeecccccccccHHhh
Q 000713 1298 DGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1298 DGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||+|++. |+.+++|||||.||+||||||
T Consensus 534 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 567 (708)
T TIGR01193 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILEN 567 (708)
T ss_pred CCEEHHHcCHHHHHHheEEEecCceehhHHHHHH
Confidence 9999975 568999999999999999998
No 71
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-41 Score=424.91 Aligned_cols=206 Identities=25% Similarity=0.363 Sum_probs=155.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQT 704 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~ 704 (1335)
+|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +++|++|++....
T Consensus 1 ~i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~ 77 (638)
T PRK10636 1 MIVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALP 77 (638)
T ss_pred CEEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 3789999999964 5799999999999999999999999999999999999999999999987 4799999754444
Q ss_pred CCHHHHhccCCCC---------------ChHHHHHHHH---H-------hccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 705 GSIRENILFGSPM---------------DSHQYQETLE---R-------CSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~---------------~~~~~~~~~~---~-------~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.|+.+++.-+... +...+..... . .....-++.+... ......+..+|||||||
T Consensus 78 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFS-NEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC-chhhcCchhhcCHHHHH
Confidence 5766665421100 0000100000 0 0011112222221 01234567789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~ 837 (1335)
||+|||||+.+||++||||||++||+.+..++.+.+.+ . +.|+|+||||++++.. ||+|++|++|++. ..|+|++
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~-~--~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS-Y--QGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh-C--CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHH
Confidence 99999999999999999999999999999888765433 2 5799999999999875 7999999999996 5788877
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
..
T Consensus 234 ~~ 235 (638)
T PRK10636 234 FE 235 (638)
T ss_pred HH
Confidence 64
No 72
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.3e-40 Score=421.60 Aligned_cols=368 Identities=17% Similarity=0.169 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+...++++.++..++.+++.++....+.+....++.++++++++.|++||+..++|+++||++.| +.+...+...+...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~ 274 (710)
T TIGR03796 196 LLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATT 274 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHH
Confidence 34445556667778888999999999999999999999999999999999999999999999998 57888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++.+..++++..+..++.+..+...+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~ 354 (710)
T TIGR03796 275 ALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHH
Confidence 88888888889999999999887766555555555555555444444445556678899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAA-FCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~-~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.....+.|+....+++..+..++.. +.+.....|.++.|.+-.++++...+...+..+...+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~ 434 (710)
T TIGR03796 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGG 434 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777776666555556655555554443322222 22222336789999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccC--C-CCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVED--N-RPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~--~-~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
++.....+.||+.++++.|+|.+..... . ...+.++..|.|+|+||+|+|+++.+++|+|+||+|+|||||||||+|
T Consensus 435 ~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~s 514 (710)
T TIGR03796 435 TLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGS 514 (710)
T ss_pred HHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCC
Confidence 9999999999999999887765422100 0 011114557899999999999876678999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||||+++|.|+++|++|+|.|||+|++. ++++++|||||.||+||||||-
T Consensus 515 GsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi 573 (710)
T TIGR03796 515 GSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL 573 (710)
T ss_pred CCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHh
Confidence 9999999999999999999999999999975 5689999999999999999983
No 73
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.1e-39 Score=418.05 Aligned_cols=359 Identities=21% Similarity=0.285 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+..+++++.++..++.+++.+.....+.+...+++.++++++++.|++||+..++|++++|++ |++.++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~ 256 (686)
T TIGR03797 178 IALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTT 256 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHH
Confidence 344556666777888889999999999999999999999999999999999999999999997 8999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhccc
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLA----IRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEE 1113 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~----~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~ 1113 (1335)
+...+.+++.+++++..+|++.++.+.+++++ ++.++.+.+..++..+ ..+...+++.|+++|+.|||+|+.
T Consensus 257 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~gi~~ik~~~~ 332 (686)
T TIGR03797 257 LLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLE----LSGKISGLTVQLINGISKLRVAGA 332 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHccHHHHHHhcc
Confidence 77777777888888888998876555443333 3344444444444443 455689999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1114 EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI 1192 (1335)
Q Consensus 1114 e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v 1192 (1335)
|+++.+++.+..++..+..+.....+.|.....+.+..+..++... .......|.++.|.+-.+.++...+...+..+.
T Consensus 333 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~ 412 (686)
T TIGR03797 333 ENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLS 412 (686)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888777777777666555554433332222 222223678899988888889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcC
Q 000713 1193 QNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGR 1272 (1335)
Q Consensus 1193 ~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGR 1272 (1335)
..+.++.....+.||+.++++.|+|.+. +..+ ..+..|.|+|+||+|+|+++.++||+|+||+|+|||||||||+
T Consensus 413 ~~~~~~~~~~~~~~ri~~~l~~~~e~~~---~~~~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~ 487 (686)
T TIGR03797 413 NTLISILAVIPLWERAKPILEALPEVDE---AKTD--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGP 487 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccccc---CcCC--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECC
Confidence 9999999999999999999987766431 1111 1234689999999999987667899999999999999999999
Q ss_pred CCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1273 TGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1273 TGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||||||+++|.|+++|++|+|.|||+|++. |+++++|||||.||+||||||-
T Consensus 488 sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 547 (686)
T TIGR03797 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547 (686)
T ss_pred CCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHH
Confidence 99999999999999999999999999999986 5689999999999999999983
No 74
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=9.5e-40 Score=410.24 Aligned_cols=361 Identities=23% Similarity=0.346 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHH
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIF 1036 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~ 1036 (1335)
.+...++++.++..++.++..+.....+.+....++.++++++++.|++|||.+++|.+++|+++|++.++..+......
T Consensus 53 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~ 132 (567)
T COG1132 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVL 132 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHH
Confidence 34555556666677777777777788889999999999999999999999999999999999999999999999988666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
+....+.+++.+++++..+|.+.++++...+++......+.+..+...+....+.+.+.+++.|+++|..+||+|+.+++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~ 212 (567)
T COG1132 133 VFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDR 212 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHH
Confidence 66678888899999999999888776665555555556666556777788888889999999999999999999999997
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSAT---VISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQ 1193 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~---~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~ 1193 (1335)
..+++.+..+...+...........+..-.+++..+ .+...+... ...+.++.|.+...+.|...+...+..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~ 290 (567)
T COG1132 213 ELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFL--VLSGSLTVGALAAFILYLLRLLTPILQLGE 290 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 766666665555444333222222222222222222 222222222 224568899999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1194 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1194 ~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
.+..++....|.||+.++.+.|++... ... +.++..|+|+|+||+|+|+++ ++||+|+||+|+|||||||||||
T Consensus 291 ~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~--~~~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~s 364 (567)
T COG1132 291 VVSLLQRASAAAERLFELLDEEPEVED---PPD--PLKDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPS 364 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccC---CCC--CCCCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCC
Confidence 999999999999999999987554221 111 145677999999999999864 46999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||||+++|+|++||++|+|.|||+||+. |+++++|||||.||+|||+||
T Consensus 365 GsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~N 422 (567)
T COG1132 365 GSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422 (567)
T ss_pred CCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHH
Confidence 9999999999999999999999999999986 578999999999999999997
No 75
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.5e-41 Score=424.16 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=156.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--EEEEecCCcC-C
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TAYVSQTAWI-Q 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--~ayv~Q~~~i-~ 703 (1335)
.|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|. ++|++|.+.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 5899999999964 47999999999999999999999999999999999999999999999874 6899997643 3
Q ss_pred CCCHHHHhccCCC-------------------CChH---HHHHH---HHH-------hccHHHHhhCCCCCCccccCCCC
Q 000713 704 TGSIRENILFGSP-------------------MDSH---QYQET---LER-------CSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-------------------~~~~---~~~~~---~~~-------~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
.+++.+++..+.. ...+ .+... ++. .....-++.+... ......
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~----~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD----PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC----CCCchh
Confidence 4677777642210 0000 00000 000 0011112222221 135677
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
+|||||||||+|||||+.+|+++||||||++||+.+.+++.+.+.. . +.|||+||||.+++.. ||+|++|++|+++
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~-~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT-F--QGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh-C--CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999988765543 2 3699999999999875 7999999999997
Q ss_pred E-ecChHHHHh
Q 000713 831 R-AAPYHQLLA 840 (1335)
Q Consensus 831 ~-~g~~~~l~~ 840 (1335)
. .|+|++...
T Consensus 233 ~~~g~~~~~~~ 243 (635)
T PRK11147 233 SYPGNYDQYLL 243 (635)
T ss_pred EecCCHHHHHH
Confidence 4 688887653
No 76
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.8e-39 Score=410.01 Aligned_cols=357 Identities=19% Similarity=0.299 Sum_probs=279.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
++++.++..++.+++.+.....+.+...+++.+++++++++|++||+..+.|+++||+++|++.++..+...+..++..+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 71 YVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445566677777888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 1121 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~ 1121 (1335)
+.+++.++++++.+|++.++.+..+++...+...+.+..+...+......+...+++.|+++|+.+||+|+.|+++.+++
T Consensus 151 ~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~ 230 (592)
T PRK10790 151 ALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERM 230 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHH
Confidence 98888888898999887654332222222222222333333344444467788999999999999999999999999998
Q ss_pred HHHHhhccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1122 LDLIDTNASPFFHSFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200 (1335)
Q Consensus 1122 ~~~ld~~~~~~~~~~~~~~Wl-~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~ 1200 (1335)
.+..++..+..+.....+.+. ..-..++..++..++.+.......|.++.|.+...+.|...+...++.+...+.++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 231 GEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887776555544333222221 1222333322211111111112367889999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1280 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTL 1280 (1335)
...|.||+.++.+.+++++. .. ..++..|+|+|+||+++|+++ +++|+|+||+|+|||||||||+||||||||
T Consensus 311 ~~~s~~ri~~~l~~~~~~~~---~~---~~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTL 383 (592)
T PRK10790 311 AVVAGERVFELMDGPRQQYG---ND---DRPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTL 383 (592)
T ss_pred HHHHHHHHHHHhcCCCccCC---CC---ccCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHH
Confidence 99999999999876554321 11 123456889999999999754 569999999999999999999999999999
Q ss_pred HHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1281 RGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1281 i~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
+++|.|+++|++|+|.+||.|++. ++.+++|||||.||+||||||
T Consensus 384 l~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~N 434 (592)
T PRK10790 384 ASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLAN 434 (592)
T ss_pred HHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHH
Confidence 999999999999999999999985 578999999999999999998
No 77
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.9e-39 Score=406.68 Aligned_cols=362 Identities=15% Similarity=0.132 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+....++.++++++++.|++||+..++|+++||+++|++.++..+...+..+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~ 144 (588)
T PRK11174 65 PFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQM 144 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34445555666777788888888899999999999999999999999999999999999999999999999999888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.++++++.+|++.++++.++++...+...+.+..++..+-.....+...+++.|+++|+.+||+|++|+++
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 224 (588)
T PRK11174 145 ALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAE 224 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHH
Confidence 88888888889999999998876555444444444445555555555555566788899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHH---------HHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGF---------IGMALSYGLSLNSS 1187 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~---------~Glalsy~l~l~~~ 1187 (1335)
.+++.+..++..+......-...+...-..++..+..+++ +++.... .|.++.|. +-+++.++..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~p 303 (588)
T PRK11174 225 TESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQP 303 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHH
Confidence 9999888887766655443333333333333333322221 1111111 13344442 22233566677788
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEE
Q 000713 1188 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKI 1267 (1335)
Q Consensus 1188 l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekV 1267 (1335)
+..+...+.++.....|.+|+.++.+.|+|.+.. +..+. .-+..++|+|+||++.|.++ ++||+|+||+|+||||+
T Consensus 304 l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~-~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~v 379 (588)
T PRK11174 304 LRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL-ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRI 379 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc-CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEE
Confidence 8888999999999999999999999876553211 11111 11245689999999988665 56999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1268 GIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1268 GIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+||||||||+++|.|++ |++|+|.|||+|++. ++.+++|||||+||+||||||
T Consensus 380 aIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 380 ALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 999999999999999999999 999999999999986 458999999999999999998
No 78
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-42 Score=366.28 Aligned_cols=204 Identities=30% Similarity=0.419 Sum_probs=173.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
+|+++|+++.|.+ +.+++|+||+|++||+.+++|||||||||+|++|.++++|++|+|.++| ++
T Consensus 1 MI~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 4899999999973 6799999999999999999999999999999999999999999999998 37
Q ss_pred EEEecCCcC-CCCCHHHHhccCC---CCChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGS---PMDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~---~~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
|||-|+.-+ ++.||.|||.+-. .+++++. ++.++..+|.+ .....+.+.+|||||+|||.+||
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p---------~~~~~RyP~eLSGGQQQRVGv~R 148 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDP---------SEYADRYPHELSGGQQQRVGVAR 148 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCH---------HHHhhcCchhcCcchhhHHHHHH
Confidence 999998766 5789999998643 2344433 33444444432 11234678899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+|+|+||||+||||-++.++-+.+..... -|+|+|+||||+++. +.+|||.+|++|+|++.++|++++.+.
T Consensus 149 ALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 149 ALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 99999999999999999999999999887775543 499999999999885 568999999999999999999998765
No 79
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-42 Score=369.34 Aligned_cols=190 Identities=35% Similarity=0.441 Sum_probs=162.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEec
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVSQ 698 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~Q 698 (1335)
.+++++++++|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|+|.++| .++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5889999999975 5799999999999999999999999999999999999999999999988 4799999
Q ss_pred CCcCC-CCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQ-TGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~-~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++-++ ..||+||+.|+.+.. .++.++.++.++|...- +..+.+|||||||||+||||++.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~-----------~~~P~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFE-----------DKYPHQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchh-----------hcCccccChHHHHHHHHHHHHhcC
Confidence 98664 569999999986642 12344455555543322 356789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeC--CeEE
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSD--GEIL 830 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~--G~i~ 830 (1335)
|+++||||||+|||+.|+.++.+.+.+.+. .++|+++||||+++.- -+|||++|.+ |+|.
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999888887654 4899999999999865 5799999998 5553
No 80
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=6.5e-39 Score=399.74 Aligned_cols=363 Identities=15% Similarity=0.142 Sum_probs=287.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+.+.+++++++..++.+++.+.....+.+...+++.++++++++.|.+||+..++|+++||+++|++.++..+...+..+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 125 (529)
T TIGR02857 46 ALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQL 125 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45556667777788888888888999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++...+...+.+..+...+-.....+-..+++.|+++|+.+||+|+.|+++
T Consensus 126 ~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 205 (529)
T TIGR02857 126 VLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQ 205 (529)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHH
Confidence 88888888888888888998765444333222222222222223333333345566889999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.......|...-.+++..+..++. .+.......|.++.|.+-..+.|+..+...+..+...+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~ 285 (529)
T TIGR02857 206 AAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYH 285 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888877776665555445555555555444433222 122222226778999888888999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.....+.+|+.++.+.|++.+. . ++...+..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+||||
T Consensus 286 ~~~~~~~~~~ri~~ll~~~~~~~~----~-~~~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsG 360 (529)
T TIGR02857 286 ARADGVAAAEALFAVLDAPRPLAG----K-APVTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAG 360 (529)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCC----C-cCCCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCC
Confidence 999999999999999975543221 1 11112345789999999999765557999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.+|+||||||
T Consensus 361 KSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~N 415 (529)
T TIGR02857 361 KSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAEN 415 (529)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHH
Confidence 9999999999999999999999999975 457999999999999999998
No 81
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8e-39 Score=401.55 Aligned_cols=361 Identities=17% Similarity=0.144 Sum_probs=283.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
+.+++++..++.++..+.....+.+....++.++++++++.|++||+..++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777788888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIF-LAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAK 1120 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~-~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~ 1120 (1335)
+.+++.++++++.+|.+.++++.+++ ++..+..++.+..+...+......+-+.+.+.|+++|+.+||+|+.|+++.++
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 99999999999999998875533222 22223344445555555555667788889999999999999999999999999
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 1121 NLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYG-LSLNSSLVMSIQNQCTLA 1199 (1335)
Q Consensus 1121 ~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~-l~l~~~l~~~v~~~~~le 1199 (1335)
+.+..++..+..+.......+...-.+++..+..+++..+......+.++.|..-.++.|. +.....+..+...+.++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~ 305 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLG 305 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766655555555555555554433322222222124566666655555554 333456666677788888
Q ss_pred HHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000713 1200 NYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1279 (1335)
Q Consensus 1200 ~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKST 1279 (1335)
....|.||+.++.+.|+|.+.. +..++ -+..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||||||
T Consensus 306 ~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKST 381 (574)
T PRK11160 306 QVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKST 381 (574)
T ss_pred HHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHH
Confidence 9999999999999876653211 11111 1456889999999999765557999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1280 LRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1280 Li~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|+++|.|+++|++|+|.|||+|++. ++.+++|||||.||+|||+||.
T Consensus 382 L~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni 434 (574)
T PRK11160 382 LLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNL 434 (574)
T ss_pred HHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHh
Confidence 9999999999999999999999986 4579999999999999999983
No 82
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=9.8e-39 Score=402.08 Aligned_cols=363 Identities=19% Similarity=0.266 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+...++++.++..++.+++.+.....+.+....++..+++++++.|.++|+..+.|++++|+++|++.++..+...+..+
T Consensus 56 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~ 135 (571)
T TIGR02203 56 VPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVL 135 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.++..++++++.+|++.++++.++++..++...+.+..++..+-.....+...+++.|+++|+.+||+++.++++
T Consensus 136 i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~ 215 (571)
T TIGR02203 136 VRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE 215 (571)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHH
Confidence 99999999999999999999988887777777777777777777777777778889999999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..+...+..........|+..-.+++..+...+..+ .......|.+++|.+..+++|...+...+..+...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~ 295 (571)
T TIGR02203 216 TRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNA 295 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888877777666666666666555433332222 2223336789999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.+...+.+|+.++.+.++|.+.. ..+.+ |..|.|+|+||+++|.++.+++|+|+||+|++||||+|||+||||
T Consensus 296 ~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~~--~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsG 370 (571)
T TIGR02203 296 PMQRGLAAAESLFTLLDSPPEKDTG---TRAIE--RARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSG 370 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCC---CCCCC--CCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCC
Confidence 9999999999999999876654321 11111 345789999999999765567999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.++++||||.+|+||||||
T Consensus 371 KSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~N 425 (571)
T TIGR02203 371 KSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANN 425 (571)
T ss_pred HHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHH
Confidence 9999999999999999999999999985 457999999999999999998
No 83
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.4e-39 Score=410.11 Aligned_cols=362 Identities=19% Similarity=0.199 Sum_probs=287.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHH
Q 000713 960 VVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVG 1039 (1335)
Q Consensus 960 ~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~ 1039 (1335)
.+++++.++..++.+++.++....+.+...+++.++++++++.|++| +..++|.+++|+ +|++.+...+...+...+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~ 268 (694)
T TIGR03375 191 IGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALI 268 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHH
Confidence 34444556677888889999999999999999999999999999998 789999999999 7999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHH
Q 000713 1040 ATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFA 1119 (1335)
Q Consensus 1040 ~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~ 1119 (1335)
.++.++..++++++.+|++.++.+..++++..+..++.+..++..+-.....+...+++.|+++|+.+||+|+.|+++.+
T Consensus 269 ~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 348 (694)
T TIGR03375 269 DLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQR 348 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHH
Confidence 77777788888888898887655444444433434444444444444445677888999999999999999999999999
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1120 KNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 1198 (1335)
Q Consensus 1120 ~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~-~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~l 1198 (1335)
++.+..++..+..+.....+.+...-.+++..+...+ ..+.+.....|.++.|.+-.+++|...+...+..+...+.++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~ 428 (694)
T TIGR03375 349 RWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRY 428 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988888776666555444444333333333222111 111122223578999999899999999999999999999999
Q ss_pred HHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHH
Q 000713 1199 ANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKT 1278 (1335)
Q Consensus 1199 e~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKS 1278 (1335)
.....++||+.++.+.|+|.+.. ..+.+..+..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||
T Consensus 429 ~~~~~~~~ri~~il~~~~e~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKS 505 (694)
T TIGR03375 429 QQAKTALQSLDELMQLPVERPEG---TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKS 505 (694)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCC---CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHH
Confidence 99999999999999887764321 111112245689999999999976666799999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1279 TLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1279 TLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||+++|.|+|+|++|+|.|||+|++. ++.+++|||||.||+|||+||.
T Consensus 506 TLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi 559 (694)
T TIGR03375 506 TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNI 559 (694)
T ss_pred HHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHH
Confidence 99999999999999999999999986 5689999999999999999983
No 84
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.5e-42 Score=374.53 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=175.5
Q ss_pred cEEEEeeEEEecCC--CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEES--SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~--~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+|+++|+++.|... ....+|+|+||+|++||+.+|+|.||+|||||+++|.++..|++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 48999999999753 124689999999999999999999999999999999999999999999999
Q ss_pred ---eEEEEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ---KTAYVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ---~~ayv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+||+++|++.+++ .||.|||.|+.+.. .+..+++.+.+.+ ....| ..+.++.+|||||||||+|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel------VgL~d--k~~~yP~qLSGGQKQRVaI 152 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL------VGLSD--KADRYPAQLSGGQKQRVAI 152 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH------cCChh--hhccCchhcCcchhhHHHH
Confidence 3799999998875 79999999975432 2233334333221 11111 2356788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||+.+|+|+|.|||||||||++.+.|.+.+.+.. .-|-|+++|||+++.++. ||||.||++|+++++|+..++..+
T Consensus 153 ARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 153 ARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred HHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 999999999999999999999999999998776543 349999999999999975 899999999999999999999865
Q ss_pred c
Q 000713 842 S 842 (1335)
Q Consensus 842 ~ 842 (1335)
+
T Consensus 233 P 233 (339)
T COG1135 233 P 233 (339)
T ss_pred c
Confidence 4
No 85
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-41 Score=381.21 Aligned_cols=223 Identities=27% Similarity=0.422 Sum_probs=201.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++ .+|+|.++| ++
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 48899999999643 3469999999999999999999999999999999999998 799999988 37
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+|+||+|.++++|++||+....+.+.++..+.++.+++.+.+..+|.+.++.+++.|.+||||||||++||||++.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964444566778888999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHHHHHh
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQELVSAH 852 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 852 (1335)
+||||||++||+.+.+.+.+.+.. ..+++|+|+|||+++.+..||+|++|++|++++.|+++++++....|..++...
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~-~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQ-AFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHH-hcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 999999999999999888765554 346899999999999988899999999999999999999998777777776544
No 86
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.4e-41 Score=367.62 Aligned_cols=201 Identities=34% Similarity=0.569 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAY 695 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ay 695 (1335)
..|+++|++++|++. ++|+||||+|++|++++|+||||||||||+++|+|+++|.+|+|.+.| +|||
T Consensus 3 ~~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 469999999999742 699999999999999999999999999999999999999999999876 4999
Q ss_pred EecCC---cCCCCCHHHHhccCCCCC-----------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 696 VSQTA---WIQTGSIRENILFGSPMD-----------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 696 v~Q~~---~i~~~Tv~eNIlfg~~~~-----------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
|||.. |-|+.||+|-+..|.... .+..+++++..++.+ +. .++..+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~-~~----------~r~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMED-LR----------DRQIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchh-hh----------CCcccccCcHHHHHH
Confidence 99964 668999999999874322 245566666666542 21 245567999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
-|||||+++||+++|||||+|+|+.++..+++.+.+...+|+||++||||++.+. .+|+|+.++ +++...|++++..+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccC
Confidence 9999999999999999999999999999999877666667999999999999876 589999985 57888999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 228 ~ 228 (254)
T COG1121 228 E 228 (254)
T ss_pred H
Confidence 4
No 87
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2e-38 Score=399.86 Aligned_cols=360 Identities=16% Similarity=0.200 Sum_probs=298.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
+++++++..++.+++.+.....+.+....++.++++++++.|.++|+....|.+++|+++|++.+...+...+..++..+
T Consensus 71 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 71 VIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777778877788888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKN 1121 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~ 1121 (1335)
+.+++.++++.+.+|++.++++..+++.+++..+..+..++..+-.....+...+++.|.++|+.+||+|+.++++.+++
T Consensus 151 ~~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 230 (582)
T PRK11176 151 ASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRF 230 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHH
Confidence 99999999999999998766555444444444444444444444445567788899999999999999999999999999
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1122 LDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLAN 1200 (1335)
Q Consensus 1122 ~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~ 1200 (1335)
.+..+...+........+.|.....++++.+...++..+ ......|.++.|.+.+++++..++...++.+...+.++.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~ 310 (582)
T PRK11176 231 DKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQR 310 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888777766666666666666655433332222 2223357899999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTL 1280 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTL 1280 (1335)
...+.+|+.++.+.|+|.+.. . ....|..|.|+|+||+++|+++.+++|+|+||+|+||||+||||+||||||||
T Consensus 311 ~~~~~~ri~~~~~~~~~~~~~---~--~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTL 385 (582)
T PRK11176 311 GMAACQTLFAILDLEQEKDEG---K--RVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTI 385 (582)
T ss_pred HHHHHHHHHHHhcCCCcCCCC---C--cCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHH
Confidence 999999999999876653311 1 11224567899999999998766779999999999999999999999999999
Q ss_pred HHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1281 RGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1281 i~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|.|+++|++|+|.+||+|++. ++.++++||||+||+||||||.
T Consensus 386 l~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni 437 (582)
T PRK11176 386 ANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNI 437 (582)
T ss_pred HHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHH
Confidence 999999999999999999999975 5689999999999999999983
No 88
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.7e-39 Score=431.07 Aligned_cols=197 Identities=22% Similarity=0.353 Sum_probs=156.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe----------EEEEecCCcC-CCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------TAYVSQTAWI-QTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------~ayv~Q~~~i-~~~Tv~ 708 (1335)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|. ++||+|++.+ .+.||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 46899999999999999999999999999999999999998 999999873 7999998754 567999
Q ss_pred HHhccCCCCC--------------hHH---------HHHHHHHhc---------cHHHHhhC--CCCCCccccC-CCCCC
Q 000713 709 ENILFGSPMD--------------SHQ---------YQETLERCS---------LIKDLELL--PYGDNTEIGE-RGVNL 753 (1335)
Q Consensus 709 eNIlfg~~~~--------------~~~---------~~~~~~~~~---------l~~dl~~l--~~gd~t~ig~-~g~~L 753 (1335)
||+.|+.... +++ .+..++++. .+.-++.+ .+..+|.+|+ ....|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 9998852110 000 000111111 01122222 3334667765 45689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCC-c-cccCCeEEEEeCCeEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVD-F-LPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~-~-l~~~D~iivl~~G~i~ 830 (1335)
||||||||+|||+++.+|++++|||||+|||+.++.++.+.+.+... .|+|+|+++||+. . ...+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 99999999999999999999999999999999999999987666544 5899999999974 3 4568999999999999
Q ss_pred EecChHHHH
Q 000713 831 RAAPYHQLL 839 (1335)
Q Consensus 831 ~~g~~~~l~ 839 (1335)
+.|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999998875
No 89
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=5e-41 Score=369.89 Aligned_cols=201 Identities=30% Similarity=0.437 Sum_probs=174.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++|+|++ +++++|+||++++||+++|+|||||||||||++|+|.++|.+|+|.++| ++
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 4789999999973 6899999999999999999999999999999999999999999999999 47
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCC-----------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPM-----------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~-----------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
||+||++.. +..||+|-+.+|+.. |.+..+++++.+++.+.. .+...+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la-----------~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA-----------DRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh-----------cCcccccChhHHHHH
Confidence 999999754 567999999998531 222344456666654432 234568999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
.|||||+++|+++|||||||+||...+.++++.+.+.. .+|+|+|+|+||++.. ..||++++|++|+++.+|+++|++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999887765 5699999999999985 578999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 53
No 90
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4e-38 Score=404.07 Aligned_cols=364 Identities=22% Similarity=0.264 Sum_probs=292.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
+..+++++.++..++.+++.++....+.+....++.++++++++.|++||+..++|.+++|+ +|++.+...+...+..+
T Consensus 181 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~ 259 (694)
T TIGR01846 181 LALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTV 259 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 34455666667788888999999999999999999999999999999999999999999999 69999999888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.++..++++++.+|++.++++..++++..+..+..+..|...+-.....+...+++.|+++|+.|||+|+.|+++
T Consensus 260 ~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~ 339 (694)
T TIGR01846 260 VLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQF 339 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHH
Confidence 77777777778888889998876654444433333333322223333333345567889999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAF-CMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~-~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..++..+..+.....+.+.....+++..+..++..+ .+.....|.++.|.+-...++...+...+..+...+.
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~ 419 (694)
T TIGR01846 340 QNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQ 419 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887777766666666665555554443332222 2222235789999998999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
+++....+.||+.++.+.|+|.+.. +..+.+ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||++|||
T Consensus 420 ~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~~~--~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsG 495 (694)
T TIGR01846 420 DFQQTGIALERLGDILNSPTEPRSA--GLAALP--ELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSG 495 (694)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccCC--CCCCCC--CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCC
Confidence 9999999999999999887764321 111111 235889999999999877677999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||+++|.|+++|++|+|.|||+|++. ++.+++|+|||.||+|||+||.
T Consensus 496 KSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi 551 (694)
T TIGR01846 496 KSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551 (694)
T ss_pred HHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence 9999999999999999999999999975 5679999999999999999983
No 91
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=6.8e-38 Score=394.74 Aligned_cols=366 Identities=19% Similarity=0.240 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+....++..+++++++.|.++|+....|++++|+++|++.++......+..+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~ 139 (576)
T TIGR02204 60 YFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMA 139 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556667777888888888999999999999999999999999999999999999999999999998888898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHH
Q 000713 1038 VGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRF 1117 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f 1117 (1335)
+..++.+++.+++++..+|++.++++..+++.+.+...+.+..+...+-....+....+++.|+++|+.+||+|+.++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~ 219 (576)
T TIGR02204 140 LRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAE 219 (576)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHH
Confidence 89999999999999999998876554444444444444444445555555667777899999999999999999999999
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1118 FAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1118 ~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
.+++.+..+...+..........|+..-...+..+..++. .+.......|.++.|.+.....|...+...+..+...+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~ 299 (576)
T TIGR02204 220 RSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWG 299 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998887776665555555555544444433222222 112222336788999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCC-CCccccceEEeeCCcEEEEEcCCCC
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDS-PLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~-~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
++.+...+.+|+.++.+.++|.+... ...+..+|..+.|+|+||+++|+++. +++|+|+||+|+|||+++|||+|||
T Consensus 300 ~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGs 377 (576)
T TIGR02204 300 ELQRAAGAAERLIELLQAEPDIKAPA--HPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGA 377 (576)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCCCCC--CCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCC
Confidence 99999999999999988765532111 11122345567899999999997543 5799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCCc------CCCceeecccccccccHHhh
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEYD------EPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~------~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||+++|.|+++|++|+|.+||+|++.. +.++++||||.+|+||||||
T Consensus 378 GKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~N 433 (576)
T TIGR02204 378 GKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMEN 433 (576)
T ss_pred CHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHH
Confidence 999999999999999999999999999753 57999999999999999998
No 92
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.2e-40 Score=366.47 Aligned_cols=208 Identities=26% Similarity=0.427 Sum_probs=165.3
Q ss_pred cccEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 625 NRAISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
+..++++|++..+... +...++++|||+|++||.+|+||++|||||-..++++|+++. -+|+|.++|
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 3568999999888633 245689999999999999999999999999999999999976 478999887
Q ss_pred ----------eEEEEecCCcC-CC--CCHHHHhc----cCCCCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 692 ----------KTAYVSQTAWI-QT--GSIRENIL----FGSPMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i-~~--~Tv~eNIl----fg~~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
+|+.++|+|.- .| -||...|. ........ +..+.++..++. . -...+...+
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~-------~-p~~rl~~yP 155 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIP-------E-PEKRLDAYP 155 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-------c-hhhhhhhCC
Confidence 58999999953 22 37665553 33333222 222333333332 1 123456788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
++|||||||||.||.||..+||++|.||||.|||..++.+|.+.+.+.. ..|..++++|||+..+.. +|+|.||.+|+
T Consensus 156 HeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ 235 (534)
T COG4172 156 HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGE 235 (534)
T ss_pred cccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccE
Confidence 9999999999999999999999999999999999999999998666543 349999999999999976 79999999999
Q ss_pred EEEecChHHHHh
Q 000713 829 ILRAAPYHQLLA 840 (1335)
Q Consensus 829 i~~~g~~~~l~~ 840 (1335)
++|.|+.++++.
T Consensus 236 ivE~~~t~~lF~ 247 (534)
T COG4172 236 IVETGTTETLFA 247 (534)
T ss_pred EeecCcHHHHhh
Confidence 999998777754
No 93
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=395.78 Aligned_cols=206 Identities=27% Similarity=0.463 Sum_probs=163.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC-
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ- 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~- 703 (1335)
.|.++|++++|++ +++++|+|+++.+|+++||||+||+||||||++|.|++.|++|+|...+ +++|++|++...
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 5899999999953 6899999999999999999999999999999999999999999999987 799999999876
Q ss_pred CCCHHHHhccCCCCCh---HHHHHHHH------------------H-------hccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 704 TGSIRENILFGSPMDS---HQYQETLE------------------R-------CSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~~~~---~~~~~~~~------------------~-------~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
..||.|.+.-+...-. .++++... . ......+..+...+ . .....+|||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~--~-~~~~~~LSG 156 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPD--E-DRPVSSLSG 156 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCc--c-cCchhhcCH
Confidence 4599999987642110 11111110 0 01112222232222 2 456678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-Eec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g 833 (1335)
|||.||+|||||..+||+|||||||++||..+..++-+.+. ..+| |+|+||||.+||.. |++|+.+++|++. +.|
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~--~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK--RYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH--hCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999998865443 2356 99999999999987 6999999999884 578
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+|+...+.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 88876543
No 94
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-40 Score=378.33 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=176.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++. .+++|+||+|++||+++++|||||||||||++|+|+.+|++|+|.++|+ +|+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999742 2999999999999999999999999999999999999999999999984 799
Q ss_pred EecCCcC-CCCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWI-QTGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i-~~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|+.-+ +++||+|||.|+.... +++.+++.+..++.+.++ .++.+||||||||||||||+
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~-----------r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLN-----------RKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHh-----------cCcccCChhhHHHHHHHHHH
Confidence 9999765 5779999999987653 234556666666665554 46678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.++|+++|||||+|+||++.+..+..++.+... -|.|+|+||||..++. .+|+|++|++|+|.+.|++.|+.++.
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999998887776443 3899999999997764 58999999999999999999998654
No 95
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.2e-39 Score=368.41 Aligned_cols=218 Identities=36% Similarity=0.682 Sum_probs=195.1
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCC
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ 703 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~ 703 (1335)
....|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++|++|+++++
T Consensus 36 ~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~ 110 (282)
T cd03291 36 DDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIM 110 (282)
T ss_pred CCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCccccc
Confidence 45679999999952 4699999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 704 TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
+.|++||+.++......++.+.++++++.+.+..++.+.++.+++++.+||||||||++||||++.+|+++||||||++|
T Consensus 111 ~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gL 190 (282)
T cd03291 111 PGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (282)
T ss_pred ccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 89999999987555445566777888888888888888888888999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
|+.+.+.+.+.++....+++|+|++||+++.+..||++++|++|++++.|+.+++.+...++.
T Consensus 191 D~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 191 DVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 999999888766554456899999999999988899999999999999999999876544443
No 96
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.4e-39 Score=408.61 Aligned_cols=204 Identities=24% Similarity=0.322 Sum_probs=146.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~ 705 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+|+|||||||||++|+|+.. .| +--+|+++|++|++.-.+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g-~p~~g~I~~~~Q~~~g~~~ 249 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG-IPKNCQILHVEQEVVGDDT 249 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC-CCCCCEEEEEeccCCCCCC
Confidence 46999999999963 469999999999999999999999999999999999741 13 2224567888887543334
Q ss_pred CHHHHhccC-------------------------------------CCCCh--HHHHHHHHHhccH----------HHHh
Q 000713 706 SIRENILFG-------------------------------------SPMDS--HQYQETLERCSLI----------KDLE 736 (1335)
Q Consensus 706 Tv~eNIlfg-------------------------------------~~~~~--~~~~~~~~~~~l~----------~dl~ 736 (1335)
|+.|.++-. .+.+. +++.++.+...+. .-+.
T Consensus 250 t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 250 TALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 553332110 00000 1222222222110 1112
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP 816 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~ 816 (1335)
.+... .........+||||||||++||||++.+|+++||||||++||+....++.+.+.. . ++|+|+||||++++.
T Consensus 330 ~lgl~-~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~--~~tviivsHd~~~l~ 405 (718)
T PLN03073 330 GLSFT-PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK-W--PKTFIVVSHAREFLN 405 (718)
T ss_pred HCCCC-hHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH-c--CCEEEEEECCHHHHH
Confidence 22211 0112345678999999999999999999999999999999999999998875543 2 689999999999987
Q ss_pred c-CCeEEEEeCCeEE-EecChHHHH
Q 000713 817 A-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 817 ~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
. ||+|++|++|++. ..|+|++..
T Consensus 406 ~~~d~i~~l~~g~i~~~~g~~~~~~ 430 (718)
T PLN03073 406 TVVTDILHLHGQKLVTYKGDYDTFE 430 (718)
T ss_pred HhCCEEEEEECCEEEEeCCCHHHHH
Confidence 6 8999999999996 678887754
No 97
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=346.82 Aligned_cols=207 Identities=24% Similarity=0.397 Sum_probs=178.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cEEEEcCe-------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-----GTIQVYGK------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-----G~i~v~g~------- 692 (1335)
...++++|+++.|++ +.+|+|||++|++++++|++||+||||||||+++..+.+..+ |+|.++|+
T Consensus 5 ~~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~ 81 (253)
T COG1117 5 IPAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKV 81 (253)
T ss_pred cceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCC
Confidence 357999999999974 579999999999999999999999999999999999988765 89999883
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCCCh-------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPMDS-------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+|.|+|.|..|+.||.|||.+|..... +..++.++..+|.+.... .+.+.+..|||||
T Consensus 82 d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQ 154 (253)
T COG1117 82 DVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQ 154 (253)
T ss_pred CHHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhH
Confidence 699999999999999999999854321 234555666677655431 2456778899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
+||++||||+.-+|+|+|||||||||||.+..+|- +++..++++-|+|+|||+++.... .|+...+.+|+++|.|+.+
T Consensus 155 QQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIE-eLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~ 233 (253)
T COG1117 155 QQRLCIARALAVKPEVLLMDEPTSALDPISTLKIE-ELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTD 233 (253)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCchhHHHHH-HHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHH
Confidence 99999999999999999999999999999998884 566666788999999999998776 5999999999999999999
Q ss_pred HHHhcc
Q 000713 837 QLLASS 842 (1335)
Q Consensus 837 ~l~~~~ 842 (1335)
++..+.
T Consensus 234 ~iF~~P 239 (253)
T COG1117 234 KIFTNP 239 (253)
T ss_pred hhhcCc
Confidence 998654
No 98
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-40 Score=349.72 Aligned_cols=205 Identities=31% Similarity=0.465 Sum_probs=173.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+..|++++++++|++ +.+++|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|
T Consensus 6 ~~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 457999999999964 6799999999999999999999999999999999999999999999998
Q ss_pred ---eEEEEecCCcCC-CCCHHHHhccCC----CCChHHHHH----HHHHhccHHH-HhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ---KTAYVSQTAWIQ-TGSIRENILFGS----PMDSHQYQE----TLERCSLIKD-LELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ---~~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~~~~~~----~~~~~~l~~d-l~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|+++|+.-+| +.||.||+.|.. ...++..++ -++.++|..+ .+. .+.+|||||+
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----------~PsELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL-----------YPSELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----------CchhhcchHH
Confidence 379999998887 559999999953 233333332 3456666655 443 4568999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc--CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL--SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~--~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
+|++||||+..||+|+++|||||||||.+...+- ++++.+. -|.|+++||||++.+.. ||+|+++.||+|+..|++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~-~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVID-ELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHH-HHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 9999999999999999999999999999987665 4554332 38999999999998765 699999999999999999
Q ss_pred HHHHhcchH
Q 000713 836 HQLLASSKE 844 (1335)
Q Consensus 836 ~~l~~~~~~ 844 (1335)
+|+.+.+..
T Consensus 231 ~el~~sd~P 239 (263)
T COG1127 231 EELLASDDP 239 (263)
T ss_pred HHHHhCCCH
Confidence 999876543
No 99
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-40 Score=362.99 Aligned_cols=202 Identities=30% Similarity=0.430 Sum_probs=173.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+|.++|+++.|+. .++++|||++|+.||++|+.|||||||||||++|+|+..|++|+|.++|+
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788999999964 57899999999999999999999999999999999999999999999985
Q ss_pred EEEEecCCcC-CCCCHHHHhccCCCCC---------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 TAYVSQTAWI-QTGSIRENILFGSPMD---------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ~ayv~Q~~~i-~~~Tv~eNIlfg~~~~---------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
||||+|+.-+ +.+||.|||.||.+.. +.+.++.++.|.|..- + ..++.+|||||||||+
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~l------a-----~ryP~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGL------A-----DRYPAQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccch------h-----hcCchhcChHHHHHHH
Confidence 7999999766 4789999999997433 2234444555554322 1 2467899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||+..+|++|||||||+|||++.++.+-..+.+...+ |.|+++||||.++. +.+|+|++|++|+|.+.|+++|+..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999988777665555 89999999999886 5689999999999999999999976
Q ss_pred cc
Q 000713 841 SS 842 (1335)
Q Consensus 841 ~~ 842 (1335)
..
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 54
No 100
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-40 Score=380.15 Aligned_cols=203 Identities=30% Similarity=0.433 Sum_probs=176.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~a 694 (1335)
..++++|++++|+ +..+++|+||+|++||+++++|||||||||||++|+|+..|++|+|.++|+ ++
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4799999999997 368999999999999999999999999999999999999999999999995 69
Q ss_pred EEecCCcCC-CCCHHHHhccCCCCC-----hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPMD-----SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~~-----~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|+|+.-+| +.||.|||.||.... ++ +..++++..+|.+ .-.+++.+|||||||||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-----------~~~R~p~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-----------FADRKPHQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-----------hhhhChhhhChHHHHHHHHHH
Confidence 999997665 789999999997622 11 3444444444433 223678899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||..+|+++|||||+||||.+.++++-.++.+... .|.|.|+||||-++ +..+|||++|++|+|.+.|+++|+....
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999888776543 49999999999987 4668999999999999999999998765
No 101
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.6e-40 Score=353.13 Aligned_cols=194 Identities=31% Similarity=0.441 Sum_probs=161.7
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
++++|+++.|.... ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.|.++|+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996532 246899999999999999999999999999999999999999999999982
Q ss_pred ---EEEEecCCc-CCCCCHHHHhccCCCC----C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 ---TAYVSQTAW-IQTGSIRENILFGSPM----D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 ---~ayv~Q~~~-i~~~Tv~eNIlfg~~~----~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+|||+|+.. +++.|++|||.++..+ . .++.++.++..++.+.. ...++.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~----------~~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL----------LKKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhh----------ccCCchhcCHHHHHHH
Confidence 799999975 5688999999853221 1 22233333433443222 1256789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
|||||++.+|+++|.||||++||.++++.+++.+.+... .|+|+|+||||.+....|||++.|+||++..
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999987776654 4899999999999999999999999999543
No 102
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.1e-39 Score=361.53 Aligned_cols=219 Identities=31% Similarity=0.488 Sum_probs=190.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
|+++|++++|++. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4689999999642 257999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++++++.|++||+.++.. .......+.++..++.+.++.+|.+.++..++++.+|||||||||+||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988999999988653 233334445566677777888888877788889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHHHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQEL 848 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~~l 848 (1335)
+||||||++||+.+.+.+.+.+.+. .+|+|+|++||+++++..||++++|++|++++.|+++++.++.+.+..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDI-CAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 9999999999999999998876554 4589999999999998889999999999999999999988765555443
No 103
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-39 Score=354.44 Aligned_cols=201 Identities=54% Similarity=0.944 Sum_probs=182.7
Q ss_pred EEEEeeEEEecCCCC--CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSS--KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~--~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~ 705 (1335)
++++|++++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++|++|+|.+++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 468999999965321 369999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
|++||+.++...+.++..+..+.+++.+.+..+|.|.++.+++++.+||||||||++||||++.+|+++||||||++||+
T Consensus 81 t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~ 160 (204)
T cd03250 81 TIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160 (204)
T ss_pred cHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCH
Confidence 99999999866666667777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 786 HTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
+..+.+++.++.. ..+++|+|++||+++.+..+|++++|++|+
T Consensus 161 ~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999998866543 345799999999999988899999999985
No 104
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.1e-36 Score=384.31 Aligned_cols=397 Identities=12% Similarity=0.159 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhccccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 000713 925 IASLSHLTFVIGQILQNSWLAANVEN--PNVSTLRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRA 1002 (1335)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~wl~w~~~~--~~~~~~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~a 1002 (1335)
+++++.++..+..+...+++.+-.+. +......+..++++++++..+..++..........+....+..++++++++.
T Consensus 23 ~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~ 102 (588)
T PRK13657 23 LLAVANVLLAAATFAEPILFGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQL 102 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455555566666666522111 1111122233344444444333333443334444555556667999999999
Q ss_pred CcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000713 1003 PMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKE 1082 (1335)
Q Consensus 1003 pmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsre 1082 (1335)
|.++|+..+.|++++|+++|++.+.......+..++..++..++.+++++..+|++.++++.++++++.+.+++.+..++
T Consensus 103 ~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~ 182 (588)
T PRK13657 103 PLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKD 182 (588)
T ss_pred CHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887778777777777778888888899988877776666667777777777777
Q ss_pred HHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 000713 1083 LMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCM 1161 (1335)
Q Consensus 1083 l~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~ 1161 (1335)
.++-.....+...+++.|+++|+.+||+|+.++++.+++.+..+...+..........|...-.+++..+..+++ .+..
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788999999999999999999999999999888888877766655444434444333333332222222 2222
Q ss_pred HhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEE
Q 000713 1162 VLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICD 1241 (1335)
Q Consensus 1162 v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~n 1241 (1335)
.....|.++.|.+-.++.|...+...+..+...+.++.....+.+|+.+..+.+++.+.. ...++.. +..|.|+|+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~~~-~~~~~I~~~~ 339 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAIDLG-RVKGAVEFDD 339 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCCcC-CCCCeEEEEE
Confidence 223367899999999999999999999999999999999999999999998754442211 1111111 2357899999
Q ss_pred EEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeeccc
Q 000713 1242 LQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREG 1315 (1335)
Q Consensus 1242 v~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep 1315 (1335)
|+++|.++ +++|+|+||+|+|||+|||||++|||||||+++|.|+++|++|+|.|||+|++. ++.+++|||||
T Consensus 340 vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 340 VSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred EEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 99999643 569999999999999999999999999999999999999999999999999986 46899999999
Q ss_pred ccccccHHhh
Q 000713 1316 SLFGQLVKEY 1325 (1335)
Q Consensus 1316 ~LFsGTIrE~ 1325 (1335)
.||+||||||
T Consensus 419 ~lf~~Ti~~N 428 (588)
T PRK13657 419 GLFNRSIEDN 428 (588)
T ss_pred ccccccHHHH
Confidence 9999999998
No 105
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.1e-37 Score=384.42 Aligned_cols=363 Identities=17% Similarity=0.177 Sum_probs=278.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFA 1037 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~ 1037 (1335)
++.+++++.++..++.+++.+.....+.+...+++.++++++++.|++||+..++|++++|+++|++.++......+..+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~ 117 (569)
T PRK10789 38 WIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTL 117 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34455555556666667777777778899999999999999999999999999999999999999999997777777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1038 VGATTNACSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1038 ~~~~~~~~~~l~vi-~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
+...+..++.++++ +..+|++.++++..+++...+.+.+.+..++..+......+.+.+++.|+++|+.+||+|+.|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~ 197 (569)
T PRK10789 118 VDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR 197 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHH
Confidence 77766666555555 47788776655444444444444444444444444455678899999999999999999999999
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 1195 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~ 1195 (1335)
+.+++.+..+...+..+.......+...-......+.. +...+.......|.++.|.+-..+.|...+...+..+...+
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~ 277 (569)
T PRK10789 198 QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMF 277 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888877666655443333332222222221111 11111222233678899999888999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000713 1196 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1196 ~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
.++.....|.+|+.++.+.|+|.+.. ...++ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||
T Consensus 278 ~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~---~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGs 352 (569)
T PRK10789 278 NIVERGSAAYSRIRAMLAEAPVVKDG--SEPVP---EGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGS 352 (569)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccCC--CCCCC---CCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCC
Confidence 99999999999999999866543211 11111 23578999999999986556799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||||+++|.|+++|++|+|.+||+|++. ++.+++++|||.||+|||+||
T Consensus 353 GKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~N 408 (569)
T PRK10789 353 GKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408 (569)
T ss_pred CHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHH
Confidence 99999999999999999999999999875 467999999999999999998
No 106
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=7.6e-39 Score=358.59 Aligned_cols=217 Identities=31% Similarity=0.529 Sum_probs=189.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
++++|+++.|++..++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999753335799999999999999999999999999999999999999999999987 279
Q ss_pred EEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.+++.|++||+.++... ..++..+.++.+++.+.+..+|.|.++..+.++.+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999988888999999987543 23344556666777777788888888888888999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEF 845 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~ 845 (1335)
+||||||++||+.+++.+.+.+.... +|+|+|++||+++.+..||++++|++|++++.|+.+++.......
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~ 231 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVY 231 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhH
Confidence 99999999999999999887665544 789999999999998889999999999999999988886554333
No 107
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=345.24 Aligned_cols=201 Identities=31% Similarity=0.467 Sum_probs=171.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
.+|+++|++..|++ ++.+|+||||+|++||+++|+|++||||||||++|.|+.+|++|+|.++|
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36999999999974 46899999999999999999999999999999999999999999999988
Q ss_pred --eEEEEecCCcC-CCCCHHHHhccCCC------------CChHHHHH---HHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 --KTAYVSQTAWI-QTGSIRENILFGSP------------MDSHQYQE---TLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 --~~ayv~Q~~~i-~~~Tv~eNIlfg~~------------~~~~~~~~---~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++||++|++.+ ...||.+|++.|.- +.++.... +++..++.+.. -.|..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccC
Confidence 37999999876 57799999998742 22222222 23333333222 2466789
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
||||+|||+|||||+++|+|+|.|||+++|||.+++++++.+.+.. ..|.|+|+.-|+++++. +||||+-|++|+|+.
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999887654 46899999999999976 589999999999999
Q ss_pred ecChHHHH
Q 000713 832 AAPYHQLL 839 (1335)
Q Consensus 832 ~g~~~~l~ 839 (1335)
.|+.+|+-
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99999963
No 108
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2e-36 Score=380.56 Aligned_cols=353 Identities=15% Similarity=0.159 Sum_probs=274.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHH
Q 000713 969 STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNL 1048 (1335)
Q Consensus 969 ~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l 1048 (1335)
..+..++........+.+....+++++++++++.|++||+++++|.+++|+++|++.+.......+...+..++.+++.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~ 148 (585)
T TIGR01192 69 NTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLI 148 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344445555566679999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhc
Q 000713 1049 GVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTN 1128 (1335)
Q Consensus 1049 ~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~ 1128 (1335)
++++..+|.+.++++.+++++..+.+.+.+..++..+......+...+++.|+++|+.|||+|+.++++.+++.+..+..
T Consensus 149 ~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~ 228 (585)
T TIGR01192 149 PTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNL 228 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88889999998877766677777777777777777777777888899999999999999999999999988888877766
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000713 1129 ASPFFHSFAANEWLIQRLETLSATVISS-AAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVER 1207 (1335)
Q Consensus 1129 ~~~~~~~~~~~~Wl~~rl~~l~~~~~~~-~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveR 1207 (1335)
.+..+.......+...-..++..+...+ ..+.......|.++.|.+-..+.|+..+...+..+...+.++.....+.+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~r 308 (585)
T TIGR01192 229 LSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLED 308 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433222222221122222221111 112222233678899999889999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCCcccCCCCCCCCC-ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhh
Q 000713 1208 LNQYMHVPSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFR 1286 (1335)
Q Consensus 1208 i~~y~~~~~E~~~~~~~~~p~~~WP-~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~R 1286 (1335)
+.+..+.+++.+. ... ++.+| ..|.|+|+||+++|+++. ++|+|+||+|++||++||||++|||||||+++|.|
T Consensus 309 i~~~~~~~~~~~~---~~~-~~~~~~~~~~i~~~~v~~~y~~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 309 FFDLEDSVFQREE---PAD-APELPNVKGAVEFRHITFEFANSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred HHHHHcCCccccC---Ccc-CCCCCCCCCeEEEEEEEEECCCCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHcc
Confidence 9998876544221 111 11122 357899999999997543 59999999999999999999999999999999999
Q ss_pred ccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1287 LIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1287 l~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|++|+|.+||+|+.. ++.+++++|||.+|+|||+||.
T Consensus 384 ~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 429 (585)
T TIGR01192 384 VYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENI 429 (585)
T ss_pred CCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHH
Confidence 999999999999999875 4578999999999999999983
No 109
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.6e-36 Score=379.40 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHH
Q 000713 961 VYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGA 1040 (1335)
Q Consensus 961 vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~ 1040 (1335)
.++++.++..++.++..+.....+.+....++.++++++++.|++||++.++|++++|+++|++.++..+. .+..++..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~ 136 (555)
T TIGR01194 58 SFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIA 136 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHH
Confidence 35556666677888888888899999999999999999999999999999999999999999999998875 46677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHH--HHH
Q 000713 1041 TTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEED--RFF 1118 (1335)
Q Consensus 1041 ~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~--~f~ 1118 (1335)
++.+++.++++++.+|.+.++++.++++...+..+..+..++..+-.....+.+.+++.|++.|+.+||+|+.++ ...
T Consensus 137 ~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~ 216 (555)
T TIGR01194 137 LAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAH 216 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHH
Confidence 888888888899999998876554444443333333333333333344456788999999999999999999854 445
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTL 1198 (1335)
Q Consensus 1119 ~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~l 1198 (1335)
+++.+..++..+...........+..-.+++..+...+..++... .+.++.|.+...+.|...+...+..+...+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~ 294 (555)
T TIGR01194 217 GAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM--FASIDAAAISAFVLALLYIKGPLEMLVSALPIL 294 (555)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444433222111111111222222211111111111 256788888888999999999999999999999
Q ss_pred HHHhHHHHHHHHhhcCCCCCCCcc--c--CCC-CCCCCCccceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEE
Q 000713 1199 ANYIISVERLNQYMHVPSEAPEVV--E--DNR-PPPNWPVVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1199 e~~~~sveRi~~y~~~~~E~~~~~--~--~~~-p~~~WP~~G~I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIV 1270 (1335)
++...|.||+.++.+.+.+++... + +.. +++..+..+.|+|+||+++|.+. .+++|+|+||+|++||++|||
T Consensus 295 ~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aiv 374 (555)
T TIGR01194 295 AQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIV 374 (555)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEE
Confidence 999999999999976433221111 1 110 00112235789999999999643 246999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1271 GRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|+||||||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.||++||+||
T Consensus 375 G~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 435 (555)
T TIGR01194 375 GENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD 435 (555)
T ss_pred CCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcc
Confidence 9999999999999999999999999999999975 467899999999999999987
No 110
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-39 Score=354.71 Aligned_cols=202 Identities=30% Similarity=0.480 Sum_probs=178.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|++|+|++. .++|+|+|++|++||.++|+|+||||||||++++.|+++|++|.|.++|.
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 68899999999764 68999999999999999999999999999999999999999999998873
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|||+|+| .++..||.|.+.||.. ... ++.+++++.|++.+.. .+.+.+|||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~-----------~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELL-----------DRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhc-----------cCCccccCCcceeeHHh
Confidence 79999999 5778999999999853 222 3455666667765543 24567999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|.+|+.+|++++||||||+||+..++.+.+.+.+...+ |+|+|++|||++.+.. ||++++|++|+++.+|+++++.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999877776655 7999999999999876 899999999999999999988764
No 111
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=354.44 Aligned_cols=216 Identities=29% Similarity=0.533 Sum_probs=190.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +++++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999632 46999999999999999999999999999999999999999999999882 79
Q ss_pred EEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++++++.|++||+.++... ......+.++.+++.+.+..+|.|.++.+++++.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987542 33344566677788888888988888888999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
+||||||++||+++.+.+.+.+.+... |+|+|++||+++.+..||++++|++|++++.|+.+++.+....+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~ 230 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYA 230 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHH
Confidence 999999999999999999876655444 899999999999988899999999999999999988876544443
No 112
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-38 Score=353.30 Aligned_cols=214 Identities=32% Similarity=0.533 Sum_probs=188.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999872 79
Q ss_pred EEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.+++.|++||+.++.. .......+..+.+.+.+.++.++.+..+..++++.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999998754 334455566677778888888887878888889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcch
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASSK 843 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~~ 843 (1335)
+||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 228 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERL-MKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGG 228 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCc
Confidence 9999999999999999988766544 46899999999999988899999999999999999988865543
No 113
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=340.49 Aligned_cols=206 Identities=28% Similarity=0.456 Sum_probs=173.6
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
..++++|+++.|+... -.++++||||+|.+||.++|+|++|||||||.++|+|+.+|++|+|.++|+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3689999999997532 114999999999999999999999999999999999999999999999983
Q ss_pred --EEEEecCCcC---CCCCHHHHhccCCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWI---QTGSIRENILFGSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i---~~~Tv~eNIlfg~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+-+|+|+|.- +..||++-|.-+.. -.+.+..++++..+|.+.. ..+++.+||||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~----------l~R~P~eLSGGQ~QRia 151 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF----------LDRRPHELSGGQRQRIA 151 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH----------HhcCchhcChhHHHHHH
Confidence 5799999852 45699888864322 1223355566666664433 34678899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||||..+|+++|||||||+||+.++..|++.+.+.. ..+-|.|+||||+..+.+ ||||+||++|+++|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999998777543 358899999999999876 89999999999999999999876
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 232 ~ 232 (252)
T COG1124 232 H 232 (252)
T ss_pred C
Confidence 5
No 114
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=4.3e-38 Score=356.38 Aligned_cols=223 Identities=30% Similarity=0.447 Sum_probs=195.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.+.|+++|++++|++. .+.+++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 17 ~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 17 GGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 4579999999999642 24699999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|++++++.|++||+........++..+.++..++.+.++.+|.|.++.+++++.+||||||||++||||++++|
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 175 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKS 175 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 37999999999999999999765444445566777778888889999988999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc-hHHHHHH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS-KEFQELV 849 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~-~~~~~l~ 849 (1335)
+++||||||++||+++.+.+++.+.. ..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.. +.+.+++
T Consensus 176 ~llllDEPt~gLD~~~~~~l~~~l~~-~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 176 SILIMDEATASIDMATENILQKVVMT-AFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHH-hcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999998888765544 45689999999999998889999999999999999999987543 3344443
No 115
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-38 Score=352.47 Aligned_cols=211 Identities=30% Similarity=0.548 Sum_probs=188.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++|++++++.|++||+.++.+. ...+..+.++.+++.+.++.+|.|..+..+.++.+||||||||++||||++++|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999998888999999987543 3345566677788888888888888888889999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHh
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++||||||++||+.+++.+++.+.+. .+++|+|++||+++.++.||++++|++|++++.|+++++.+
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 99999999999999999998766554 46899999999999988899999999999999999888754
No 116
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-38 Score=371.86 Aligned_cols=203 Identities=25% Similarity=0.364 Sum_probs=173.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|. +||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 257999999999999999999999999999999999999999999999983 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|++.++ +.||+|||.|+... +. ++.+++++..++.+. .+.++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPL-----------LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 99999887 57999999987532 21 223344455555332 3456679999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++.+. .||+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999877655443 899999999998875 58999999999999999999997654
No 117
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6e-38 Score=347.36 Aligned_cols=206 Identities=32% Similarity=0.488 Sum_probs=185.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 47899999999743 24799999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+|++|++.+++.|++||+.+......++..+.++..++.+.+..++.|.++..++++.+||||||||++||||++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999988999999987655556666777888888888888899999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
+||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 161 LVLDEATASVDPETDALIQKTIREA-FKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999888766543 45789999999999988899999999999998775
No 118
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.1e-38 Score=370.04 Aligned_cols=204 Identities=26% Similarity=0.384 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+|+++|++++|+..+ ..++|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996322 24799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++|+||++.++ +.|++||+.++.. .+.. +..+.++..++.+ ....++.+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~-----------~~~~~~~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGD-----------KHDSYPSNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHH
Confidence 379999998877 5799999987532 2221 1223333333322 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|||||+.+|+++|||||||+||+.+...+.+.+.+...+ |.|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999877665444 8999999999999865 8999999999999999999997
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
No 119
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-38 Score=365.32 Aligned_cols=209 Identities=24% Similarity=0.392 Sum_probs=173.6
Q ss_pred CcccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------
Q 000713 624 VNRAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------- 691 (1335)
.+..|+++|++|+|++.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 446799999999997422 24699999999999999999999999999999999999999999999875
Q ss_pred -------------------eEEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCC
Q 000713 692 -------------------KTAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDN 743 (1335)
Q Consensus 692 -------------------~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~ 743 (1335)
+++||+|+| .+++.|++|||.|+.. .+.+. ..+.++.+++. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~----------~ 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLD----------D 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCC----------h
Confidence 168999998 6788899999998742 12211 12222222221 1
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEE
Q 000713 744 TEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVL 822 (1335)
Q Consensus 744 t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~ii 822 (1335)
...++++.+||||||||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|+||||++++. .||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 2345778899999999999999999999999999999999999999998876655556899999999999874 689999
Q ss_pred EEeCCeEEEecChHHHHhcc
Q 000713 823 LMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|++|++++.|+++++....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EEECCEEEEeCCHHHHhcCH
Confidence 99999999999999987643
No 120
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-38 Score=324.58 Aligned_cols=194 Identities=28% Similarity=0.464 Sum_probs=171.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+|+++|+++.|++. .++|+|+||+|++||++-|+|||||||||||++|.++.+|++|+|.++|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48899999999864 6799999999999999999999999999999999999999999999988
Q ss_pred -eEEEEecCCc-CCCCCHHHHhccCCCC---C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 -KTAYVSQTAW-IQTGSIRENILFGSPM---D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~~ayv~Q~~~-i~~~Tv~eNIlfg~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+||+|+|+.- +.+.||.||+.|.... . +++..++++..+|.+....+| .+|||||||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHH
Confidence 4799999975 5678999999986432 1 234456677777777666665 479999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEEeCCeEEEec
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAA 833 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl~~G~i~~~g 833 (1335)
||||+.++|+++|.||||.+|||..+..|++.+.+....|.||+++|||.+.+..+ -+++.+++|+++...
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999999999999987777777899999999999999876 899999999998654
No 121
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-38 Score=371.16 Aligned_cols=188 Identities=28% Similarity=0.374 Sum_probs=161.8
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------eEEEEecCCcCCC-
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------KTAYVSQTAWIQT- 704 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~~ayv~Q~~~i~~- 704 (1335)
+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++||+|++++++
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 5689999999999999999999999999999999999999999999987 3799999999985
Q ss_pred CCHHHHhccCCCC---Ch-HHHHHH---HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 000713 705 GSIRENILFGSPM---DS-HQYQET---LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~---~~-~~~~~~---~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLD 777 (1335)
.||+|||.|+..+ +. +..+++ ++..+|. ...++++.+|||||||||+|||||+.+|+++|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-----------~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-----------EYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-----------hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 22 222333 3333332 2345678899999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 778 DPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 778 EP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||||||+.+++++.+.+.+... .|+|+|+||||++++. .||+|++|++|++++.|+++++..+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 99999999999999998876654 4899999999999865 5899999999999999999999765
No 122
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.7e-38 Score=320.63 Aligned_cols=199 Identities=30% Similarity=0.421 Sum_probs=172.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|.++++.|+|+.. =-..+++|++||++||+||+||||||||+.|+|+..|.+|+|.++|. ++.+
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 5678999999642 13578999999999999999999999999999999999999999984 5899
Q ss_pred ecCCcCC-CCCHHHHhccCCC-------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSP-------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|+..+| ..||++||-+|.. .++++.+.+..+.++...++.+| .+|||||||||+|||++.
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 9999887 4699999999853 23456667777788887777666 479999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
++-+|+|||||||||||.-+.++...+.+.. .++.|+++|||+++.+.. +|+++++++|+|.++|+.+++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999998887665543 468999999999998764 7999999999999999999987643
No 123
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-37 Score=344.74 Aligned_cols=205 Identities=37% Similarity=0.601 Sum_probs=181.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|+++.|++. .+++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++| .+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999642 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++|+++++..|++||+.++... +..+..+.++.+++.+.++..|.|.+|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 999999988888999999886443 3445667788888888888889888888888899999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
++||||||++||+.++..+.+.+.+.. +++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999987665543 358999999999988778999999999998654
No 124
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-38 Score=350.93 Aligned_cols=200 Identities=29% Similarity=0.405 Sum_probs=166.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 4699999999999999999999999999999999999999999999877
Q ss_pred eEEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 KTAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|++|++.+++ .|++||+.++.. .+.+ +..++++.+++.+ ....+..+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRG-----------AEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHH
Confidence 2689999987765 599999987532 1221 1223333333321 224566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999887665544 48999999999998764 89999999999999999988764
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 125
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.8e-38 Score=367.05 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=172.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TA 694 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~a 694 (1335)
..|+++|++++|++ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 47999999999963 46899999999999999999999999999999999999999999999883 79
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
||+|++.++ +.|++|||.|+... +.. +.+++++..++.. ...+++.+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~-----------~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAG-----------FEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHH
Confidence 999999877 56999999997432 211 2223333333321 2245678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
|+.+|+++|||||||+||+..++++.+.+.+...+ |+|+|+||||.+++. .+|+|++|++|+|++.|+++++..+.
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999998876655443 899999999999875 58999999999999999999997654
No 126
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-37 Score=386.90 Aligned_cols=178 Identities=25% Similarity=0.323 Sum_probs=145.2
Q ss_pred eEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-----------EcCe---------
Q 000713 633 ASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-----------VYGK--------- 692 (1335)
Q Consensus 633 ~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-----------v~g~--------- 692 (1335)
++++|++ +..+|++++ .+++|++++|+||||||||||+++|+|+++|++|+|. ++|+
T Consensus 79 ~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 79 PVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred ceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 6888864 236899999 8999999999999999999999999999999999997 6551
Q ss_pred ------EEEEe----cCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 ------TAYVS----QTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 ------~ayv~----Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|.+ |.|.++.+|++||+.... ..++.+++++..++... ......+||||||||++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~--~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~ 222 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD--ERGKLDEVVERLGLENI-----------LDRDISELSGGELQRVA 222 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh--HHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 34444 456667789999997421 12344555555555322 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCC
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDG 827 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G 827 (1335)
||||++++|++|||||||++||+..+.++++.+.+... |+|+|+||||++++.. +|+|++|++|
T Consensus 223 ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 223 IAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999987666555 9999999999999875 7999999763
No 127
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=358.01 Aligned_cols=205 Identities=26% Similarity=0.418 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
+|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999996432 136999999999999999999999999999999999999999999999872
Q ss_pred -----EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|+| .+++.|+.||+.|+.. ... +++.+.++..++.++ ..++.+.+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~----------~~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADE----------FWEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hccCCcccCCHHHH
Confidence 68999998 6778899999998742 111 123344444444221 12456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999998766554456899999999999885 589999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+..+
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8754
No 128
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=355.53 Aligned_cols=204 Identities=27% Similarity=0.395 Sum_probs=173.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997432346999999999999999999999999999999999999999999999883 6
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|+|. ++..|++|||.|+.. .+. ++..++++..++.+.. ...+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFK-----------EREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHHHHHHH
Confidence 99999984 567899999998742 222 2334455555554322 345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999998766655444 8999999999998877999999999999999999988654
No 129
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-37 Score=357.77 Aligned_cols=206 Identities=24% Similarity=0.402 Sum_probs=171.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999996422 14699999999999999999999999999999999999999999999877
Q ss_pred --eEEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 692 --KTAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 692 --~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
+++|+||+| .+++.|++||+.|+.. .+.+ +.+++++.+++. +.+..++++.+||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 269999998 5678899999998632 2222 223344444442 1122456778999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++|||||+.+|+++||||||++||+.++.++++.+.+... .|+|+|++|||++++. .||+|++|++|++++.|+++++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999887665544 3899999999999875 5899999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
No 130
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.9e-38 Score=366.79 Aligned_cols=202 Identities=29% Similarity=0.380 Sum_probs=172.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ ..+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ ++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5899999999963 46899999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|+|++-++ +.||+|||.|+... +.. +.+++++..++.+ ...+++.+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPG-----------SERKYPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCc-----------hhhCChhhCCHHHHHHHHHHHHH
Confidence 99999877 57999999987432 221 2333333333322 23467789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+.+|+++|||||||+||+..++++.+.+.+... .|.|+|+||||.+++. .+|+|++|++|++++.|+++++.++.
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999887765544 3899999999999875 58999999999999999999998654
No 131
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=357.37 Aligned_cols=204 Identities=24% Similarity=0.428 Sum_probs=171.5
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 146999999999999999999999999999999999999999999999873
Q ss_pred ----EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ----TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|+| .+++.|++|||.|+.. .+. ++.+++++.++|.+++ .+.++.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 69999997 5677899999988632 122 2334445555553222 13467789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++||||++.+|+++||||||++||+.+...+.+.+..... .|.|||++|||++.+. .||+|++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999887665544 4899999999999975 589999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
No 132
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.4e-37 Score=365.23 Aligned_cols=205 Identities=26% Similarity=0.378 Sum_probs=173.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
....++++|++++|++ .++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+
T Consensus 11 ~~~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ 87 (375)
T PRK09452 11 LSPLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRH 87 (375)
T ss_pred CCceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCC
Confidence 3456999999999963 46899999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++ ..||+|||.|+... ... +.+++++..++.+. ..+++.+|||||||||+||
T Consensus 88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEF-----------AQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHHHHH
Confidence 79999998776 56999999987532 111 22334444444322 3456679999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
|||+.+|+++|||||||+||++.++.+.+.+.+... .|.|+|+||||.+++. .+|+|++|++|+|++.|+++++..+.
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999887765544 4899999999999865 58999999999999999999998654
No 133
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=356.24 Aligned_cols=205 Identities=25% Similarity=0.403 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999996432 13699999999999999999999999999999999999999999998864
Q ss_pred ------------------------eEEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhC
Q 000713 692 ------------------------KTAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELL 738 (1335)
Q Consensus 692 ------------------------~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l 738 (1335)
.+||++|+| .++..||+|||.|+.. .+.+ +..++++.++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~---- 157 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDES---- 157 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----
Confidence 269999986 4677899999998742 2221 23344444444311
Q ss_pred CCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-c
Q 000713 739 PYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-A 817 (1335)
Q Consensus 739 ~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~ 817 (1335)
..++++.+||||||||++||||++.+|+++||||||++||+..++.+.+.+.+....|+|+|++|||++++. .
T Consensus 158 ------~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 158 ------YLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred ------hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 134567899999999999999999999999999999999999999998876655556999999999999875 5
Q ss_pred CCeEEEEeCCeEEEecChHHHHhc
Q 000713 818 FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 818 ~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||+|++|++|++++.|+++++.++
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 899999999999999999998754
No 134
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.3e-37 Score=358.24 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=170.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------e
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------K 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~ 692 (1335)
...|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ 81 (306)
T PRK13537 5 VAPIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQR 81 (306)
T ss_pred CceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhc
Confidence 357999999999963 4699999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+||+||++.++ +.|++||+.|.... +.. +.+++++.+++.+ ....+..+||||||||++||
T Consensus 82 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 82 VGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-----------KADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred EEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------HhcCchhhCCHHHHHHHHHH
Confidence 79999998776 57999999853221 111 2223333333321 12345568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++++|++++|||||+|||+.+++++++.+.+...+|+|+|++||++++++. ||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999998766655568999999999999865 899999999999999999998643
No 135
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=8.4e-35 Score=363.68 Aligned_cols=352 Identities=16% Similarity=0.165 Sum_probs=254.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHH
Q 000713 962 YLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGAT 1041 (1335)
Q Consensus 962 y~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~ 1041 (1335)
++++.++..++.+++.+.....+.+...+++.++++++++.|++||+.+++|+++||+++|++.+...+. .+..++..+
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~ 132 (547)
T PRK10522 54 FLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGI 132 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHH
Confidence 3333444455666777788888999999999999999999999999999999999999999999987654 466777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccH---HHHH
Q 000713 1042 TNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEE---DRFF 1118 (1335)
Q Consensus 1042 ~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e---~~f~ 1118 (1335)
+.+++.++++++.+|++.++++..+++.+.+..+..+..+...+-.....+...+++.|.++|+.+|+ ++.+ +++.
T Consensus 133 ~~~i~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~ 211 (547)
T PRK10522 133 ILTLGSAAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFE 211 (547)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHH
Confidence 88888889999999998876665554444444444433333333334567788999999999999995 5443 4566
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1119 AKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLP-PGTFTPGFIGMALSYGLSLNSSLVMSIQNQC 1196 (1335)
Q Consensus 1119 ~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~-~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~ 1196 (1335)
+++.+..+...+..+... ++......+..++. ...++..+... .+....+.+++...+.+.+...+..+...+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~ 287 (547)
T PRK10522 212 NEYEPDAQEYRHHIIRAD----TFHLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALP 287 (547)
T ss_pred HHHhHHHHHHHhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665544333221 12222222111111 11111111110 1112333444444455556678888889999
Q ss_pred HHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCc
Q 000713 1197 TLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSG 1276 (1335)
Q Consensus 1197 ~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSG 1276 (1335)
++.....+.+|+.++.+.|.|++. ++..+. |..+.|+|+||+++|+++ +++|+|+||+|+|||++||||+||||
T Consensus 288 ~~~~~~~a~~ri~~l~~~~~~~~~--~~~~~~---~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsG 361 (547)
T PRK10522 288 TLLSAQVAFNKLNKLALAPYKAEF--PRPQAF---PDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSG 361 (547)
T ss_pred HHHHHHHHHHHHHHHhcccccccc--cccccc---CcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCC
Confidence 999999999999999765543321 111111 223689999999999743 46999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1277 KTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1277 KSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
||||+++|.|+++|++|+|.+||+|++. ++.+++|+|||.||+|||+||
T Consensus 362 KSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n 416 (547)
T PRK10522 362 KSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE 416 (547)
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc
Confidence 9999999999999999999999999975 467999999999999999987
No 136
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-37 Score=345.62 Aligned_cols=200 Identities=29% Similarity=0.384 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ay 695 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 3789999999964 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC-------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM-------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|+|.++ ..|++||+.++... +.. +.++.++.+++.+ ....++.+||||||||++|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHHH
Confidence 99999876 46999999876422 111 1222333333321 2345677899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||++.+|+++||||||++||+++++.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999998766555443 899999999999875 489999999999999999988764
No 137
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=362.42 Aligned_cols=202 Identities=33% Similarity=0.427 Sum_probs=170.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 4889999999964 46999999999999999999999999999999999999999999999873 799
Q ss_pred EecCCcCCC-CCHHHHhccCCCC-------ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSPM-------DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~~-------~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++.++. .|++||+.|+... +.+ +.++.++..++.+ ....++.+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH-----------LADRYPAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCch-----------hhhCChhhCCHHHHHHHHH
Confidence 999998764 6999999987432 111 2223333333321 2345678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||+.+|+++||||||++||+..++++.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++.++
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999998877655444 899999999999875 4899999999999999999999765
Q ss_pred c
Q 000713 842 S 842 (1335)
Q Consensus 842 ~ 842 (1335)
.
T Consensus 228 p 228 (353)
T PRK10851 228 P 228 (353)
T ss_pred c
Confidence 3
No 138
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-37 Score=364.25 Aligned_cols=202 Identities=28% Similarity=0.400 Sum_probs=171.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC--cEEEEcCe-----------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ--GTIQVYGK-----------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~--G~i~v~g~-----------~ 693 (1335)
.|+++|++++|++ ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++ |+|.++|+ +
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 5899999999963 469999999999999999999999999999999999999999 99999873 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+||+|++.++ ..||+|||.|+... .. .+.+++++..+|.+ ...+++.+|||||||||+|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~-----------~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGD-----------AAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc-----------hhhCChhhCCHHHHHHHHHHH
Confidence 9999999876 56999999986432 21 12333344333322 234567899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~--~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+++|||||||+||+..++++.+.+.+...+ |.|+|+||||++++. .+|+|++|++|++++.|+++++.++.
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999998877655544 799999999999875 58999999999999999999998654
No 139
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-37 Score=346.18 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=166.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------T 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ 693 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCCh-H---------HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMDS-H---------QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~~-~---------~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
+|++|++.++. .|++||+.++..... . ...+..+ ...+.++.+. -....+.++.+||||||||++
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--l~~~~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE--RAEELLERVG--LADLADRPAGELSYGQQRRLE 153 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH--HHHHHHHHcC--ccchhhCChhhCCHHHHHHHH
Confidence 99999987765 599999987532110 0 0000000 0111222221 122345677899999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999998776555578999999999999865 89999999999999999888754
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-37 Score=343.62 Aligned_cols=195 Identities=28% Similarity=0.458 Sum_probs=163.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC-----CCCCcEEEEcCe----------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV-----PHTQGTIQVYGK---------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~-----~~~~G~i~v~g~---------- 692 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 468999999964 47999999999999999999999999999999999999 999999999772
Q ss_pred -----EEEEecCCcCCCCCHHHHhccCCCC----C----hHHHHHHHHHhccHHHHhhCCCCCCccccCC--CCCCCHHH
Q 000713 693 -----TAYVSQTAWIQTGSIRENILFGSPM----D----SHQYQETLERCSLIKDLELLPYGDNTEIGER--GVNLSGGQ 757 (1335)
Q Consensus 693 -----~ayv~Q~~~i~~~Tv~eNIlfg~~~----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQ 757 (1335)
++|++|++.+++.|++||+.++... . .++..++++.+++.+.+ .++ +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEV-----------KDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHH-----------hccCCcccCCHHH
Confidence 6899999987788999999875321 1 11223344444443222 123 47899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+...+ +|+|++|||++++. .||++++|++|++++.|+++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 99999999999999999999999999999999998876655445 99999999999876 58999999999999999876
Q ss_pred H
Q 000713 837 Q 837 (1335)
Q Consensus 837 ~ 837 (1335)
+
T Consensus 226 ~ 226 (227)
T cd03260 226 Q 226 (227)
T ss_pred c
Confidence 5
No 141
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.2e-37 Score=338.60 Aligned_cols=198 Identities=44% Similarity=0.807 Sum_probs=177.3
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------------- 691 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------------- 691 (1335)
.+.|+.|+|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999753 4799999999999999999999999999999999999999999999865
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|++.+++.|++||+.++.+.+.++.+++++.+++.+.++..|.|+++.++.++.+||||||||++||||++.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 27899999998889999999987666555667788888888888888999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHH-HHHHH-cCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 772 DIYLLDDPFSAVDAHTASSLFND-YVMEA-LSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~-~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
+++||||||++||+.+.+.+.+. +++.. ..|+|+|++||+.+.+..+|++++|++|+
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999988873 44443 34799999999999988899999999884
No 142
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=350.88 Aligned_cols=199 Identities=27% Similarity=0.457 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.|+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 6899999999963 24699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|+| .++..|++||+.|+.. .+. ++.+++++.+++.+.. ...+.+||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFR-----------DKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHh-----------cCChhhCCHHHHHHHHHH
Confidence 9999998 5678899999998632 221 2334455555554322 345568999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
||++.+|+++||||||++||+.++.++.+.+.+...+|+|+|++||+++++. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999998876655556899999999999985 5899999999999999998754
No 143
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-37 Score=352.47 Aligned_cols=205 Identities=23% Similarity=0.430 Sum_probs=169.4
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 24699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCC--cCCCCCHHHHhccCCC---CChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ----KTAYVSQTA--WIQTGSIRENILFGSP---MDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ----~~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++||+||+| .+++.|++|||.|+.. ++.+.. .+.++.+++.. ...++.+.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR----------DVMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 269999997 5677899999998632 222222 22333333321 123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.++..+.+.+.+... .|+|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999876665443 4899999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 88654
No 144
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-37 Score=364.15 Aligned_cols=201 Identities=24% Similarity=0.382 Sum_probs=171.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAY 695 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ay 695 (1335)
.|+++|++++|++ +.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|+ ++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 46999999999999999999999999999999999999999999999873 799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++ +.|++||+.|+... +. ++.+++++.+++.+. ...++.+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-----------~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHL-----------LDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 99998876 56999999986432 21 123344444444322 3456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+|+++||||||++||+..++.+.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999998876655443 899999999999875 5899999999999999999998764
No 145
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=348.66 Aligned_cols=204 Identities=29% Similarity=0.431 Sum_probs=173.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 469999999999642 346999999999999999999999999999999999999999999999883
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++ .+++.|++|||.++.. ... ++..++++.++|.+.+ ...+.+||||||||++|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFL-----------NREPHRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhh-----------hCCcccCCHHHHHHHHH
Confidence 69999998 4667899999987632 121 2234445555554333 34566899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999876655544 8999999999999888999999999999999999988654
No 146
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-37 Score=339.07 Aligned_cols=192 Identities=32% Similarity=0.443 Sum_probs=160.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 4799999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ +.|++||+.++... +.. +.++.++.+++.+. ..+.+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHHHHh
Confidence 9998766 57999999875321 111 22334444444322 34556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999887665544 48999999999998764 8999999999998765
No 147
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-37 Score=360.43 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=170.0
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+|+++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996321 35799999999999999999999999999999999999999999999987
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+++|++|++.++. .|++||+.++.. .+.. +..+.++..++. .....++.+||||||||+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-----------DKADRYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHHH
Confidence 2799999988764 799999987532 2221 122233333332 123456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+||||++++|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999887665544 48999999999999865 8999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
No 148
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-37 Score=340.52 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++. .|++||+.++.. .+. ++.++.++.+++.+. ...++.+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEA-----------ADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHH
Confidence 999987664 699999987421 111 123344455544322 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
+.+|+++||||||++||+++.+.+.+.+.+...+ |+|+|++||+++++.. +|++++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999998876665554 8999999999999865 899999999999999887764
No 149
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-37 Score=348.32 Aligned_cols=202 Identities=25% Similarity=0.412 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ml~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (274)
T PRK13644 1 MIRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKL 78 (274)
T ss_pred CEEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhh
Confidence 3789999999953 246999999999999999999999999999999999999999999998872
Q ss_pred EEEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|+|. +++.|++|||.++.. .+. ++.+++++.+++... ....+.+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKY-----------RHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHH-----------hcCCcccCCHHHHHHHHH
Confidence 699999985 467899999987632 122 123334444444322 345667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.++..+++.+.+...+|+|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999988766555568999999999999888999999999999999999987653
No 150
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=7.5e-37 Score=343.55 Aligned_cols=198 Identities=31% Similarity=0.453 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 246999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
++|++|++.++ +.|++||+.++... .. ++..+.++.+++.+ ..+.++.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLAD-----------KAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCH
Confidence 69999998776 47999999875321 01 12233333333322 23456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999876665544 4899999999999985 58999999999999999
Q ss_pred ChHHH
Q 000713 834 PYHQL 838 (1335)
Q Consensus 834 ~~~~l 838 (1335)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 99886
No 151
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-37 Score=341.43 Aligned_cols=198 Identities=28% Similarity=0.385 Sum_probs=164.5
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..++++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 4689999999996432 14699999999999999999999999999999999999999999999987
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++. .|++||+.++.. .+.+ +..++++.+++. ...++++.+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHH
Confidence 2799999987765 599999987421 1211 223334443332 2234567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+... +|+|+|++||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999876665544 5899999999999988889999999999998775
No 152
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-37 Score=339.50 Aligned_cols=197 Identities=35% Similarity=0.472 Sum_probs=163.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEec
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~Q 698 (1335)
|+++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996421 14699999999999999999999999999999999999999999999987 4799999
Q ss_pred CCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++.. .+. ++.++.++..++.+. ...+..+||||||||++||||++.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHHHHHcC
Confidence 988765 799999987532 111 223344444444332 2345678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEe--CCeEEEecCh
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMS--DGEILRAAPY 835 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~--~G~i~~~g~~ 835 (1335)
|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++. .||++++|+ +|++++.++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999987765543 4899999999999875 589999999 7999988764
No 153
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.3e-37 Score=335.92 Aligned_cols=189 Identities=32% Similarity=0.522 Sum_probs=159.8
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEEEec
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAYVSQ 698 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ayv~Q 698 (1335)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 367999999641 4699999999999999999999999999999999999999999999987 3799999
Q ss_pred CC--cCCCCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 699 TA--WIQTGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 699 ~~--~i~~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
++ .+++.|++||+.++... +.++..+.++.+++.+. ...++.+||||||||++||||++.+|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYAL-----------KERHPLSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchh-----------cCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 97 45678999999876432 22344556666655432 2345668999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
+||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .||++++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999998766655456899999999999986 48999999999974
No 154
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.2e-34 Score=358.37 Aligned_cols=357 Identities=16% Similarity=0.109 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHH-HHHH
Q 000713 958 LIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPF-SLIF 1036 (1335)
Q Consensus 958 ~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~-~~~~ 1036 (1335)
+..+++++.++..++.+++.++....+.+....++.++++++++.|++. .|..++++++|++.+...+.. .+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~ 122 (544)
T TIGR01842 48 LTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFA 122 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555566677788888888889999999999999999999999843 367789999999999987766 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR 1116 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~ 1116 (1335)
++..++.++ .+++++..+|++.++++..+++.+.+..++.+..+...+-.....+...+++.|+++|+.+||+|+.|++
T Consensus 123 ~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~ 201 (544)
T TIGR01842 123 FFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGN 201 (544)
T ss_pred HHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHH
Confidence 555544444 3456778888876554433333333333333333333344455667788999999999999999999999
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 1117 FFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVI-SSAAFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQ 1195 (1335)
Q Consensus 1117 f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~-~~~~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~ 1195 (1335)
+.+++.+..++..+..+...........-..++..+.. ++..+.......|.+++|.+-.++.|...+...+..+...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~ 281 (544)
T TIGR01842 202 LTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGW 281 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887666554433322222222222222211 11122222233678999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCC
Q 000713 1196 CTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGS 1275 (1335)
Q Consensus 1196 ~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGS 1275 (1335)
.++.....|.+|+.++.+.|+|.+. ....+ +..|.|+|+||+++|+++.+++|+|+||+|+|||++||||+|||
T Consensus 282 ~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~~---~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGs 355 (544)
T TIGR01842 282 KQFSGARQAYKRLNELLANYPSRDP---AMPLP---EPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGS 355 (544)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccC---CCCCC---CCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCC
Confidence 9999999999999999977655421 11111 23578999999999976656799999999999999999999999
Q ss_pred cHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1276 GKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1276 GKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|||||+++|.|+++|++|+|.+||+|+.. ++.++++||||++|+|||+||.
T Consensus 356 GKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni 412 (544)
T TIGR01842 356 GKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENI 412 (544)
T ss_pred CHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHH
Confidence 99999999999999999999999999975 4579999999999999999984
No 155
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4.2e-37 Score=339.43 Aligned_cols=191 Identities=25% Similarity=0.440 Sum_probs=159.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR 79 (216)
T ss_pred CeEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence 37899999999642 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++ ..|++||+.++.. .+ .++..++++.+++.+. ......+||||||||++
T Consensus 80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~ 148 (216)
T TIGR00960 80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGK-----------AHALPMQLSGGEQQRVA 148 (216)
T ss_pred HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 69999998776 4699999987522 11 1233444454444322 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. ||++++|++|++
T Consensus 149 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 149 IARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999988766554568999999999999874 899999999975
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=341.26 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=171.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 46999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCCCCHHHHhccCCCCC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 694 AYVSQTAWIQTGSIRENILFGSPMD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 694 ayv~Q~~~i~~~Tv~eNIlfg~~~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
+|++|++.+++.|++||+.++.... ..+..+.++.+++..++ ..+.+.+||||||||++||||++.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999888889999998764322 22334455555543221 2346778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|+++||||||++||+.+++.+.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999988876665444 48999999999999764 899999999999999999988653
No 157
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.5e-37 Score=343.06 Aligned_cols=199 Identities=31% Similarity=0.467 Sum_probs=165.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 14699999999999999999999999999999999999999999999877
Q ss_pred eEEEEecCCcCCC-CCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 KTAYVSQTAWIQT-GSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~-~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++. .|++||+.++... .. ++..+.++..++. ...+.++.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-----------DKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-----------hhhCCCcccCCH
Confidence 2789999987654 7999999865321 11 1122223333332 123457789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999887665544 4899999999999987 58999999999999999
Q ss_pred ChHHHH
Q 000713 834 PYHQLL 839 (1335)
Q Consensus 834 ~~~~l~ 839 (1335)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 998863
No 158
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.2e-37 Score=339.16 Aligned_cols=191 Identities=30% Similarity=0.435 Sum_probs=158.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 14799999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCCCC---h----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSPMD---S----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~~~---~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++.++. .|++||+.++.... . ++..+.++..++.+ ...+++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGD-----------RLNHYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCch-----------hhhcChhhcCHHHHHHH
Confidence 3799999987765 59999998764321 1 12233333333322 23456779999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++.+..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999877665544 48999999999998877899999999974
No 159
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1e-36 Score=340.89 Aligned_cols=201 Identities=27% Similarity=0.444 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~a 694 (1335)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~ 77 (236)
T TIGR03864 1 ALEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLG 77 (236)
T ss_pred CEEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEE
Confidence 3789999999963 46999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcC-CCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWI-QTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i-~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.+ +..|++||+.++.. ..... ..+.++..++ ....++++.+||||||||++||||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~lara 146 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARA 146 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHH
Confidence 99999876 57899999986532 11111 1222232222 223456778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
++.+|+++||||||++||+.+++.+.+.+.+... +|+|+|++||+++.+..||++++|++|++++.|+++++.++
T Consensus 147 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 147 LLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999886665543 58999999999999888999999999999999999888654
No 160
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-36 Score=353.26 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=166.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
...++++|++++|+. .++|+|+||++.+||++|++|.||+|||||+|.|.|.++|++|+|.++|+
T Consensus 6 ~~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~ 82 (500)
T COG1129 6 PPLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALA 82 (500)
T ss_pred cceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHh
Confidence 346899999999974 68999999999999999999999999999999999999999999999995
Q ss_pred --EEEEecCCcC-CCCCHHHHhccCCCCChH----HHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 --TAYVSQTAWI-QTGSIRENILFGSPMDSH----QYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 --~ayv~Q~~~i-~~~Tv~eNIlfg~~~~~~----~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
|+.|.|+..+ ++.||.|||.+|.+.... .+++..+ +..+.+.+..- .. ......+||+||||-|+||
T Consensus 83 ~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~-~~----~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 83 AGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD-ID----PDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred CCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC-CC----hhhhhhhCCHHHHHHHHHH
Confidence 6899999865 688999999988754321 1111111 11122222111 11 3345668999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||+..+++|++||||||+|+.+..+++|+.+.+...+|.++|+|||.++++. -||+|.||+||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999988777889999999999999875 589999999999986543
No 161
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.2e-36 Score=338.18 Aligned_cols=205 Identities=27% Similarity=0.464 Sum_probs=174.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
..+.++++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34679999999999753334699999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 692 -KTAYVSQTAWIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
.++|++|++.+++.|++||+.++... ......+..+...+.+.++.++.|..+.+++++.+||||||||++||||+++
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 27999999988888999999876432 2222223333445566677777666677888999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+|+++||||||++||+++++.+.+.+.+. .+++|+|++||+++++..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDW-PERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999988766553 447899999999999888999999999974
No 162
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=349.68 Aligned_cols=205 Identities=26% Similarity=0.446 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999996421 246999999999999999999999999999999999999999999999873
Q ss_pred -----EEEEecCC--cCCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTA--WIQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|+| .+++.|++||+.++.. ...+ +.++.++.+++..+ ....++.+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSED----------LISKSPFELSGGQM 151 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhhCCcccCCHHHH
Confidence 68999997 4667899999987532 2211 22333444444211 12456779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999988766554456899999999999875 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (287)
T PRK13641 232 IFSD 235 (287)
T ss_pred HhcC
Confidence 8653
No 163
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-36 Score=331.74 Aligned_cols=190 Identities=27% Similarity=0.467 Sum_probs=163.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
+..++++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3569999999999642 24799999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 692 KTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 692 ~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
.++|++|+|.+++.|++||+.+...++.+ ++.+.+. +++++.+||||||||++||||++.+|
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~~~---~~~~~l~---------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYSDE---EIYGALR---------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCCHH---HHHHHhh---------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 37999999998889999999865443322 2222221 24577899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+..+|++++|++|++.+.|+
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREE-FTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999888766554 46899999999999987799999999999998775
No 164
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1e-36 Score=353.02 Aligned_cols=201 Identities=28% Similarity=0.425 Sum_probs=168.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KT 693 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ 693 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i 79 (303)
T TIGR01288 3 VAIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAI 79 (303)
T ss_pred cEEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcE
Confidence 46999999999963 4699999999999999999999999999999999999999999999987 37
Q ss_pred EEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|+||++.++ ..|++||+.+... .+.. +.++.++.+++.+ ....+..+||||||||++|||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-----------~~~~~~~~LSgG~~qrv~la~ 148 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADVRVALLSGGMKRRLTLAR 148 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------HhcCchhhCCHHHHHHHHHHH
Confidence 9999998776 5799999974211 2221 1222333333321 223566789999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||+|++|++|+++..|+++++..
T Consensus 149 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 149 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999998877665557899999999999986 489999999999999999998864
No 165
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1e-36 Score=334.42 Aligned_cols=192 Identities=23% Similarity=0.353 Sum_probs=163.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 468999999953 47999999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCC-CCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 697 SQTAWIQ-TGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++.++ +.|++||+.++.. .+.++.++.++..++.+.. .+++.+||||||||++||||++.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSA-----------KKKVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------hhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9998765 6799999976532 2334455556665554332 34567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999987666554568999999999999864 8999999999998764
No 166
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-36 Score=360.55 Aligned_cols=204 Identities=25% Similarity=0.357 Sum_probs=172.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------E
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------T 693 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ 693 (1335)
...++++|++++|++ .++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+ +
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 457999999999963 46899999999999999999999999999999999999999999999884 7
Q ss_pred EEEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
||++|++-++ ..|+.|||.|+... +.. +..+.++..++.+ ....++.+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~-----------~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQE-----------FAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHH
Confidence 9999999876 56999999987431 221 2223333333321 234567799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||+.+|+++|||||||+||+..++.+.+.+.+... .|.|+|+||||.+++. .+|+|++|++|++++.|+++++..+.
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999877665443 4899999999999865 58999999999999999999998654
No 167
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=344.47 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=169.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g--------- 691 (1335)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (253)
T PRK14242 5 PKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81 (253)
T ss_pred cEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence 56999999999963 469999999999999999999999999999999999864 5899999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . + .++.++.++.+++.+.+. +..++.+.+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 154 (253)
T PRK14242 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQ 154 (253)
T ss_pred HHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHH
Confidence 2799999998887899999987531 1 1 112333444444432221 23456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 155 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14242 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHEL-KARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTE 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 45799999999999985 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14242 234 QIFTR 238 (253)
T ss_pred HHHcC
Confidence 88643
No 168
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-36 Score=356.57 Aligned_cols=203 Identities=29% Similarity=0.429 Sum_probs=170.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
...|+++|++++|++ +.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 357999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+||+||++.++ ..|++||+.+... .+.. +.++.++.+++.+ ...++..+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~-----------~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-----------KADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhCCChhhCCHHHHHHHHHH
Confidence 79999998775 6799999975221 1111 1222333333221 12356678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++++|+++||||||+|||+.+++.+++.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.++
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999998776655569999999999999865 899999999999999999998643
No 169
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.1e-36 Score=337.33 Aligned_cols=199 Identities=26% Similarity=0.424 Sum_probs=165.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------eE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------KT 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~~ 693 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 468999999963 4699999999999999999999999999999999999999999999987 27
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCC--hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMD--SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~--~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
+|++|++.++. .|++||+.++.... .+ +..++++.. ..++ ...+.++.+||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999997765 59999998764322 11 112222222 1111 123467789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999988766554568999999999998754 8999999999999999888764
No 170
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-36 Score=354.92 Aligned_cols=208 Identities=23% Similarity=0.363 Sum_probs=171.8
Q ss_pred CcccEEEEeeEEEecCCC----------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--
Q 000713 624 VNRAISIKSASFSWEESS----------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~----------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-- 691 (1335)
.+..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 446799999999996421 24689999999999999999999999999999999999999999999976
Q ss_pred --------------eEEEEecCCc--C-CCCCHHHHhccCC-----CCChHH----HHHHHHHhccHHHHhhCCCCCCcc
Q 000713 692 --------------KTAYVSQTAW--I-QTGSIRENILFGS-----PMDSHQ----YQETLERCSLIKDLELLPYGDNTE 745 (1335)
Q Consensus 692 --------------~~ayv~Q~~~--i-~~~Tv~eNIlfg~-----~~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ 745 (1335)
+++||+|+|. + +..||.|||.++. ..+.+. ..+.++..++.++ .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~ 154 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------L 154 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------H
Confidence 3799999983 4 4679999997531 123222 2233444443211 2
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iiv 823 (1335)
.+.++.+|||||||||+||||++.+|+++|+||||+|||+.++.++.+.+.+... .|.|+|+||||++.+.. ||+|++
T Consensus 155 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~v 234 (331)
T PRK15079 155 INRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLV 234 (331)
T ss_pred hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 3567789999999999999999999999999999999999999999987665544 48999999999999875 899999
Q ss_pred EeCCeEEEecChHHHHhc
Q 000713 824 MSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~~ 841 (1335)
|++|+|++.|+.+++.++
T Consensus 235 l~~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 235 MYLGHAVELGTYDEVYHN 252 (331)
T ss_pred EECCEEEEEcCHHHHHcC
Confidence 999999999999999764
No 171
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=339.89 Aligned_cols=202 Identities=28% Similarity=0.418 Sum_probs=167.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 127999999999999999999999999999999999999999999998762
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++.++. .|++||+.++.. .+.. +..+.++..++.+ .......+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLED-----------KADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhcChhhCCHHHHHHHH
Confidence 699999998775 699999987532 1211 1223333333322 234566789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999998876655444 8999999999999865 89999999999999999888753
No 172
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=347.40 Aligned_cols=203 Identities=23% Similarity=0.438 Sum_probs=171.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..|+++|++++|++ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 46999999999963 246999999999999999999999999999999999999999999999872
Q ss_pred --EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++ .+++.|++||+.++.. +.. ++.+++++.+++... ...++.+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hhCCcccCCHHHHHHH
Confidence 69999998 4678899999987532 111 223444455554322 2356789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999998766655443 899999999999986 58999999999999999999987
Q ss_pred hc
Q 000713 840 AS 841 (1335)
Q Consensus 840 ~~ 841 (1335)
..
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 64
No 173
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.2e-36 Score=342.61 Aligned_cols=203 Identities=29% Similarity=0.442 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g~--------- 692 (1335)
+++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 4789999999964 46999999999999999999999999999999999999998 999998762
Q ss_pred ------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|+||++.+++.|++||+.++... ... +.+++++..++.++++ ...+.++.+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 7899999988889999999875321 111 2233333444432110 224567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.++..+++.+.+.. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELK-KKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999887655443 3589999999999876 589999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+..
T Consensus 230 ~~~ 232 (247)
T TIGR00972 230 IFT 232 (247)
T ss_pred HHh
Confidence 864
No 174
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.2e-36 Score=361.28 Aligned_cols=201 Identities=29% Similarity=0.452 Sum_probs=171.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KT 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~ 693 (1335)
.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++| ++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 5899999999963 5799999999999999999999999999999999999999999999988 27
Q ss_pred EEEecCCcC-CCCCHHHHhccCCC-----CC------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSP-----MD------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~-----~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
||++|++.+ ++.|++||+.++.. +. .++.+++++..++.+. ......+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-----------~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-----------ADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHH
Confidence 999999876 67899999988742 11 1223344444444322 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+|||||+++|+++||||||++||+..+.++++.+.+...+|+|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999998766655556899999999999985 589999999999999999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 175
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-36 Score=348.72 Aligned_cols=201 Identities=29% Similarity=0.473 Sum_probs=174.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
.++++|+++.|+. .+.+|+||||+|++|+++|++||||||||||+++|+|+++|++|+|.++| ++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999963 25799999999999999999999999999999999999999999999998 379
Q ss_pred EEecCCcC-CCCCHHHHhccCCC-------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWI-QTGSIRENILFGSP-------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i-~~~Tv~eNIlfg~~-------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|+||+|.+ ...|++||+.|... .+.++.+++++..+|.++. +.+..+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 99999875 46799999987422 2234556666666654311 34667899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG-KVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~-~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|.++|++|+|||||+|||+..+..+.+.+.+...+| +||+++||.++.+.. ||+|++|++|+++..|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999998777777666 799999999999876 89999999999999999988754
No 176
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=341.36 Aligned_cols=197 Identities=30% Similarity=0.374 Sum_probs=166.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------eEEEEe
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------KTAYVS 697 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------~~ayv~ 697 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 4799999999999999999999999999999999999999999999977 379999
Q ss_pred cCCcCCC-CCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 698 QTAWIQT-GSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 698 Q~~~i~~-~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
|++.++. .|++||+.++... ..++..+.++..++.+. .++++.+||||||||++||||++.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9987765 7999999876321 12334445555554322 345677999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||||++||+.++..+.+.+.+... .++|+|++|||++++. .||+|++|++|++++.|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999886665433 4899999999999875 58999999999999888754
No 177
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=322.55 Aligned_cols=209 Identities=30% Similarity=0.453 Sum_probs=176.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++..|+. .++|+++||++++||+++|+|+||+||||||++|+|..++.+|+|.++|+
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 36899999999974 57999999999999999999999999999999999999999999999984
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCCCChH-HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSPMDSH-QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~~-~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
++||||...+| +.||+||+..|....+. +..+. .+++-++.+|. .....+.++.+|||||||-++|||||+.
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~----~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQER----DLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhcccccccccc----cHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 69999998886 67999999987543222 11110 12333455553 2234567889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|+++|||||+.||-|...++||+.+.+...+ |.||++|.++..+. +.+||.++|++|+|+.+|+.+|+.++.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 99999999999999999999999877766544 67999999999985 568999999999999999999998664
No 178
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=345.95 Aligned_cols=205 Identities=27% Similarity=0.406 Sum_probs=172.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC---cEEEEcC----------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ---GTIQVYG---------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~---G~i~v~g---------- 691 (1335)
+..|+++|++++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|
T Consensus 3 ~~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~ 81 (282)
T PRK13640 3 DNIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWD 81 (282)
T ss_pred CceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHH
Confidence 4579999999999642 2469999999999999999999999999999999999999988 8999887
Q ss_pred ---eEEEEecCCc--CCCCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ---KTAYVSQTAW--IQTGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ---~~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++. +++.|++||+.|+... +.+ +..+.++.+++.+. .+..+.+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~G~~q 150 (282)
T PRK13640 82 IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDY-----------IDSEPANLSGGQKQ 150 (282)
T ss_pred HHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHH
Confidence 2699999984 5688999999886322 221 23344555555332 34566799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++++|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 151 rv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 230 (282)
T PRK13640 151 RVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEI 230 (282)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876655443 8999999999999888999999999999999999988
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
...
T Consensus 231 ~~~ 233 (282)
T PRK13640 231 FSK 233 (282)
T ss_pred hcC
Confidence 654
No 179
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.5e-36 Score=338.77 Aligned_cols=199 Identities=27% Similarity=0.412 Sum_probs=165.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------T 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------~ 693 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 46999999999999999999999999999999999999999999999762 6
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|++|++.++. .|++||+.++.+. ... +.++.++..++. ...++.+.+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-----------HLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHHH
Confidence 89999987765 5999999875321 111 112223333222 2345667899999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998866555556899999999998765 489999999999999999888754
No 180
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.7e-36 Score=335.62 Aligned_cols=198 Identities=27% Similarity=0.453 Sum_probs=165.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
|+++|+++.|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4689999999642 257999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++ +.|++||+.++.. ... ++.+++++.+++.+. .+....+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK-----------ANKRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------HhChhhhCCHHHHHHHHHHHHH
Confidence 99998776 6799999986421 111 233444555544322 2345678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
+.+|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999987665443 46999999999999865 899999999999999988764
No 181
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-36 Score=341.09 Aligned_cols=204 Identities=23% Similarity=0.347 Sum_probs=170.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK----------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~----------- 692 (1335)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 479999999999999999999999999999999999974 68999999873
Q ss_pred --EEEEecCCcCCCCCHHHHhccCCCC-----C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTAWIQTGSIRENILFGSPM-----D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|+||++.+++.|++||+.++... . .++..+.++.+++.+.+.. ...+++.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 7999999998889999999875321 1 1123445555555433221 23456789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++++|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+. .+|+|++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKEL-SHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999888765554 45899999999999876 589999999999999999998864
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 231 ~ 231 (246)
T PRK14269 231 N 231 (246)
T ss_pred C
Confidence 3
No 182
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.2e-36 Score=334.97 Aligned_cols=190 Identities=38% Similarity=0.604 Sum_probs=158.0
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCC
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTA 700 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~ 700 (1335)
+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|++|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 36789999963 46999999999999999999999999999999999999999999999883 89999998
Q ss_pred cC---CCCCHHHHhccCCCC--------C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 701 WI---QTGSIRENILFGSPM--------D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 701 ~i---~~~Tv~eNIlfg~~~--------~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.+ ++.|++||+.++... . .++.+++++.+++.+.+ ..++.+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELA-----------DRQIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHH
Confidence 65 457999999875321 1 12334455555554332 24567899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999988776655578999999999999865 7999999886 55543
No 183
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=343.90 Aligned_cols=204 Identities=26% Similarity=0.430 Sum_probs=171.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------e
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------K 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~ 692 (1335)
..++++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 6 ~~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 479999999999632 35799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++ .+++.|++||+.++.. ++.+. ..++++..++.+. ...++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 69999998 4567899999987532 22222 2334444444332 335667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+...+ ++|+|++||+++.+..||++++|++|++.+.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999998877665444 5999999999998888999999999999999999887654
No 184
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=344.46 Aligned_cols=205 Identities=26% Similarity=0.394 Sum_probs=172.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 689999999997433346999999999999999999999999999999999999999999999872 6
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++. +++.|+.|||.++.. ...+ +.+++++.+++.+. ....+.+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF-----------KTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhH-----------hhCCcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 1211 23344444444322 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9999999999999999999999999998866655444 89999999999998889999999999999999999987543
No 185
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.6e-36 Score=335.23 Aligned_cols=195 Identities=23% Similarity=0.384 Sum_probs=161.8
Q ss_pred EEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 628 ISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
|+++|++++|++... .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 789999999964211 1699999999999999999999999999999999999999999999987 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.++. .|++||+.+... .+. ++..+.++..++.+ ...+++.+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEE-----------LLDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-----------HHhhhhhhcCHHHHHHHHHHHH
Confidence 9999998766 599999976422 111 12233444444432 2345677999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999988766555568999999999998764 8999999999998754
No 186
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=344.53 Aligned_cols=205 Identities=24% Similarity=0.398 Sum_probs=172.8
Q ss_pred ccEEEEeeEEEecCCC---CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------
Q 000713 626 RAISIKSASFSWEESS---SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~---~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------- 691 (1335)
..++++|++++|++.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 4689999999997432 25799999999999999999999999999999999999999999999986
Q ss_pred ---eEEEEecCCc--CCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ---KTAYVSQTAW--IQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ---~~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|+|. ++..|+.||+.|+.. .+. ++.+++++.+++.+.. +....+|||||||
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~q 151 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYR-----------RHAPHLLSGGQKQ 151 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHh-----------hCCcccCCHHHHH
Confidence 2689999984 556799999998632 121 2334455555554332 3456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+.+... .|.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999876665444 48999999999999877999999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
..+
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 654
No 187
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.4e-36 Score=334.44 Aligned_cols=192 Identities=26% Similarity=0.409 Sum_probs=160.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999964 4799999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ +.|++||+.++.. ...+ +..+.++..++.+ .....+.+||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEH-----------LLDRKPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHH-----------HHhCChhhCCHHHHHHHHHHHHHh
Confidence 9999876 5699999987532 1222 1223333333322 234566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+++++.+.+.+.+... .|+|+|++||+++.+.. +|+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999887665544 48999999999998765 8999999999998865
No 188
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-33 Score=314.15 Aligned_cols=503 Identities=18% Similarity=0.155 Sum_probs=332.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 301 LRTILICHWRDIFMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF----KYEGYLLAITLFLAKILESLSQRQRYFRSR 376 (1335)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~----~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~ 376 (1335)
.-.++|.+++.++....+.+...+ ++..++-.+-+++-+.+.. ..+-..+...++++..+. +.-..+..+
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~---~g~~lLa~in~al~e~~~~~~~~l~~f~~llllf~~ss~is---~lg~t~~gq 77 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGA---LGIGLLAFINQALIETADTSLLVLPEFLGLLLLFMVSSLIS---QLGLTTLGQ 77 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcccceeeHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 346778888888776666655443 3344444444444332221 111112222222333222 222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 377 LIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSVQLCIALIILFHAVGLATIAA 456 (1335)
Q Consensus 377 r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~plqi~lal~lL~~~lG~a~l~g 456 (1335)
..-.++|..++ +|.+.-.-..-.+.+++.++.-++.|+..|.-.+..+.++-.+.+-+..+...|++.=+...+..
T Consensus 78 ~~I~klr~~~~----~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 78 HFIYKLRSEFI----KKILDTPLERIERLGSARLLAGLTSDVRNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHH----HHHhcCHHHHHHHhcccchhhhhcccccceeehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33445555544 55554444444456778899999999999986666777666666666667777777666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcc--HHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 457 LVVITITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAW--ETHFKNAI-EILRNVEYKWLSAVQLRK 533 (1335)
Q Consensus 457 l~v~vl~~~~~~~~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~aw--E~~f~~~I-~~~R~~El~~l~~~~~~~ 533 (1335)
++.+++.+..+++..++..+...+..+..|+-.+....++.|-|.+|+..= |..+.+.+ .+.++.|- ...+..
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~----~~~~~n 229 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH----HIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh----hhhhhh
Confidence 778888888888888888888888999999999999999999999998763 22222222 22233222 111222
Q ss_pred HHH-hHHHhHHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 000713 534 AYN-GFLFWSSPVLVSTATFGACYFLNVPLY-ASNVFTFVATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEAPELQ 611 (1335)
Q Consensus 534 a~~-~~~~~~~p~lv~~~tF~~~~l~~~~Lt-~~~vFt~lalf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~~e~~ 611 (1335)
.+. ....|+.-++.+++....|+...-... ...+.|....+-.|+.|+.++...++.+.+|.++++||.++=..|+..
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 221 223343333333333333332221111 123334444455689999999999999999999999999987655432
Q ss_pred cccccccCCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC
Q 000713 612 SMNIRQKGNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG 691 (1335)
Q Consensus 612 ~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g 691 (1335)
+-.. .++. ++-..|+++|+.|+|++. ..-+..||++|++||+|-|+|.||||||||++.+.|++.|++|+|.+||
T Consensus 310 ~~~~-~q~~--p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 310 DFPR-PQAF--PDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred cCCC-CCcC--CcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 2111 1111 123469999999999753 3678999999999999999999999999999999999999999999999
Q ss_pred eE-------------EEEecCCcCCCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 KT-------------AYVSQTAWIQTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ~~-------------ayv~Q~~~i~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
+. +-|+-|-|+|+.++ -++. ..++..++-++...+....+. .+|.- ....||-||
T Consensus 385 ~pV~~e~ledYR~LfSavFsDyhLF~~ll-----~~e~~as~q~i~~~LqrLel~~ktsl-~d~~f-----s~~kLStGQ 453 (546)
T COG4615 385 KPVSAEQLEDYRKLFSAVFSDYHLFDQLL-----GPEGKASPQLIEKWLQRLELAHKTSL-NDGRF-----SNLKLSTGQ 453 (546)
T ss_pred ccCCCCCHHHHHHHHHHHhhhHhhhHhhh-----CCccCCChHHHHHHHHHHHHhhhhcc-cCCcc-----cccccccch
Confidence 63 22333444443221 1111 223344444444444433322 22221 234699999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
|+|+++--|+.-+.|||++||=-+.-||+-++..++..+-. ...||||+.||||-.+...|||++.|++|++++..
T Consensus 454 kKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 454 KKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999999887744 45699999999999999999999999999998753
No 189
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-36 Score=346.28 Aligned_cols=204 Identities=23% Similarity=0.404 Sum_probs=168.4
Q ss_pred EEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
|+++|++++|++.. .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999996422 146999999999999999999999999999999999999999999999772
Q ss_pred ----EEEEecCC--cCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ----TAYVSQTA--WIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ----~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++ .+++.|++||+.++.. .+.+. .+++++..++.+ .....++.+|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHHH
Confidence 68999997 5677899999987532 22221 122233333321 1124567799999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999998876655456899999999999886 4899999999999999999988
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
No 190
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.5e-36 Score=334.48 Aligned_cols=192 Identities=29% Similarity=0.437 Sum_probs=158.9
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
++++|++++|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996422 24699999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++.++ +.|++||+.++.. .+.. +..+.++.+++.+ .....+.+||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH-----------RINHRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 279999998776 5699999987421 2211 2223333333322 23456678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~ 830 (1335)
+||||++.+|+++||||||++||+++++.+.+.+.+... .++|+|++||+++++..+|+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999886665544 489999999999998889999999999985
No 191
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=341.25 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=169.6
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 47999999999963 4699999999999999999999999999999999999987 489999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++|||.++... +.. +..+.++.+++.+.+. .....++.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK-------DKLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH-------HHHhCCcccCCHHH
Confidence 26899999988889999999876321 111 2233334444322111 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+. .+++|+|++||+++++. .+|+|++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL-KESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 45799999999999975 48999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 88643
No 192
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-36 Score=337.94 Aligned_cols=200 Identities=30% Similarity=0.422 Sum_probs=167.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------e
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------K 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~ 692 (1335)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 4699999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++ ..|++||+.++.. .+.. +..++++..++. .....++.+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-----------ERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-----------HHHhcChhhcCHHHHHHHHH
Confidence 69999998776 5699999987531 1221 122333333332 22345667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|++++|||||++||+++++.+.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999988665554568999999999999865 899999999999999999987643
No 193
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-37 Score=316.13 Aligned_cols=202 Identities=24% Similarity=0.371 Sum_probs=168.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
++++++++++|++ ...+++|+||++++||+++|.||||+||||+|+.|.+++.|++|+|.++| ++|
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 4789999999975 34589999999999999999999999999999999999999999999988 467
Q ss_pred EEecCC-cCCCCCHHHHhccCCCC-C------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTA-WIQTGSIRENILFGSPM-D------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~-~i~~~Tv~eNIlfg~~~-~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
.++-+. .....|+||||.|-... + +.+..++.+..++.+ .+.++..++|-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~-----------~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLE-----------YLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHH-----------HHHHHHhhhchhhHHHHHHHHH
Confidence 777544 44577999999864321 1 223334444444333 2346777899999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|.+||++|+||||+||||..+.+.+.+.+.+....|++||+.||.++.++ .||+|+++++|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999998877766666667999999999999998 5999999999999999999998653
No 194
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=346.08 Aligned_cols=199 Identities=30% Similarity=0.395 Sum_probs=165.4
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------------- 691 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------------- 691 (1335)
.++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 4689999999999999999999999999999999999999999999876
Q ss_pred eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+++|++|++.++ +.|++||+.++.. .+. ++..++++.+++.+.+ ...+.+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE-----------HKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCCcccCCHHHHHHHHH
Confidence 379999999876 5799999987532 111 2234445555544332 34556899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999887665443 4899999999999875 5899999999999999999988653
No 195
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=346.57 Aligned_cols=206 Identities=24% Similarity=0.394 Sum_probs=167.3
Q ss_pred ccEEEEeeEEEecCCC--CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 626 RAISIKSASFSWEESS--SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~--~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
..|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4589999999996432 13599999999999999999999999999999999999999999998876
Q ss_pred ------eEEEEecCCc--CCCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAW--IQTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++. +++.|++||+.|+... ..+. ..+.++..++ +. ...++.+.+||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~---~~~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PE---DYVKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------Ch---hHhcCChhhCCHH
Confidence 2689999984 5667999999876321 1111 1122222222 11 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999998876655444 4899999999999875 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++.+.
T Consensus 235 ~~~~~~~ 241 (289)
T PRK13645 235 PFEIFSN 241 (289)
T ss_pred HHHHhcC
Confidence 9888654
No 196
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.1e-36 Score=341.37 Aligned_cols=203 Identities=27% Similarity=0.410 Sum_probs=168.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
++.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 3 ENKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 356999999999963 4699999999999999999999999999999999999999999998876
Q ss_pred -------------eEEEEecCCcCCC-CCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 -------------KTAYVSQTAWIQT-GSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 -------------~~ayv~Q~~~i~~-~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|++|++.++. .|++||+.++. ..+.. +..+.++..++...+ .++.
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~ 149 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKY 149 (257)
T ss_pred ccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCC
Confidence 2699999998775 69999997642 11111 122233333322111 1356
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
+.+||||||||++||||++++|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 77999999999999999999999999999999999999999988665554568999999999999875 89999999999
Q ss_pred EEEecChHHHHh
Q 000713 829 ILRAAPYHQLLA 840 (1335)
Q Consensus 829 i~~~g~~~~l~~ 840 (1335)
+++.|+++++..
T Consensus 230 i~~~~~~~~~~~ 241 (257)
T PRK10619 230 IEEEGAPEQLFG 241 (257)
T ss_pred EEEeCCHHHhhh
Confidence 999999998764
No 197
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=3e-36 Score=343.50 Aligned_cols=202 Identities=26% Similarity=0.362 Sum_probs=168.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 47999999999963 4699999999999999999999999999999999999999999999886
Q ss_pred --eEEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 692 --KTAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 692 --~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
+++|++|++.+++ .|++||+.++.. .+.. +..+.++..++.+ ....+..+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHH
Confidence 2789999998775 599999986421 1221 1222333333321 2334667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
++||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++|||++++.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999998776655443 8999999999998865 899999999999999999998
Q ss_pred Hhc
Q 000713 839 LAS 841 (1335)
Q Consensus 839 ~~~ 841 (1335)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 754
No 198
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-36 Score=340.82 Aligned_cols=206 Identities=26% Similarity=0.386 Sum_probs=170.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
...++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 469999999999999999999999999999999999986 5899998876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++..|++||+.++.. .+.+ +.+++++..++.+++ ...+++++.+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 3789999998888999999987532 2221 223344444442222 12345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|+.
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 239 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL-KQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNT 239 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988766554 45789999999999886 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 240 ~~~~~~ 245 (260)
T PRK10744 240 DTIFTK 245 (260)
T ss_pred HHHHhC
Confidence 988653
No 199
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.3e-36 Score=339.14 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=168.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++.|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (255)
T PRK11300 4 PLLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM 80 (255)
T ss_pred ceEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhc
Confidence 36999999999963 47999999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC----------------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM----------------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
++|++|++.++. .|++||+.++... +... .+..+. ..+.++.+ |-....++++.+||
T Consensus 81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~l~~~--gl~~~~~~~~~~LS 155 (255)
T PRK11300 81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEALDR--AATWLERV--GLLEHANRQAGNLA 155 (255)
T ss_pred CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHHHH--HHHHHHhC--ChhhhhhCChhhCC
Confidence 678999998775 5999999975310 0000 000000 11112222 11223456788999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
||||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. ||++++|++|++++.
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 99999999999999999999999999999999999998876665554 8999999999999865 899999999999999
Q ss_pred cChHHHHh
Q 000713 833 APYHQLLA 840 (1335)
Q Consensus 833 g~~~~l~~ 840 (1335)
|+.+++.+
T Consensus 236 ~~~~~~~~ 243 (255)
T PRK11300 236 GTPEEIRN 243 (255)
T ss_pred CCHHHHhh
Confidence 99988754
No 200
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-36 Score=330.85 Aligned_cols=206 Identities=31% Similarity=0.409 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCC---------------------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC
Q 000713 626 RAISIKSASFSWEESS---------------------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ 684 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~---------------------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~ 684 (1335)
..|+++|+++-++++. ...-++|+||+|++||+..|.|-+|||||||++++.++++|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 3578888888776431 1124789999999999999999999999999999999999999
Q ss_pred cEEEEcCe-----------------EEEEecCCc-CCCCCHHHHhccCCCCC----hHHH---HHHHHHhccHHHHhhCC
Q 000713 685 GTIQVYGK-----------------TAYVSQTAW-IQTGSIRENILFGSPMD----SHQY---QETLERCSLIKDLELLP 739 (1335)
Q Consensus 685 G~i~v~g~-----------------~ayv~Q~~~-i~~~Tv~eNIlfg~~~~----~~~~---~~~~~~~~l~~dl~~l~ 739 (1335)
|+|.++|+ ++.|+|+.- +++.||.||+.||.+.. +++. .+.++..+|...-
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~---- 158 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYA---- 158 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhh----
Confidence 99999983 699999965 56789999999997642 2333 3444555554332
Q ss_pred CCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-cc
Q 000713 740 YGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PA 817 (1335)
Q Consensus 740 ~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~ 817 (1335)
..++.+|||||||||.|||||..||||+|+|||||||||--+.++-+++++... -+||+|+||||+++. +.
T Consensus 159 -------~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlri 231 (386)
T COG4175 159 -------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRI 231 (386)
T ss_pred -------hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhc
Confidence 246779999999999999999999999999999999999999999888876543 389999999999985 55
Q ss_pred CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 818 FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 818 ~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
-|||.+|+||+|++.|+++|+..+.
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl~~P 256 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEILLNP 256 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHHcCc
Confidence 7999999999999999999998664
No 201
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=340.89 Aligned_cols=192 Identities=29% Similarity=0.461 Sum_probs=165.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++.|+. ..+++||||+|++||+.|++|+||+|||||+++|.|.++|++|+|.++|+
T Consensus 3 ~~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 46899999999973 57899999999999999999999999999999999999999999999995
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCCCC------hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSPMD------SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~~~------~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
||.|.|++-+ .+.||.|||..|.+-. .. +.++..+..++.-| ..++..+||-|||||
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vd-----------p~~~V~dLsVG~qQR 148 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-----------PDAKVADLSVGEQQR 148 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCC-----------ccceeecCCcchhHH
Confidence 6999999876 5779999999987532 21 22233333333222 235667899999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|.|-+|||++|+++|||||||-|-|...+++|+.+.+....|+|||+|||.++++.. ||++-||++|+++.
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 999999999999999999999999999999999888778889999999999998765 89999999999864
No 202
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-36 Score=331.51 Aligned_cols=192 Identities=25% Similarity=0.434 Sum_probs=160.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~Q 698 (1335)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999963 4699999999999999999999999999999999999999999999987 3799999
Q ss_pred CCcCCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++... .. ++..+.++..++.. ...+++.+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSE-----------YANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChH-----------HHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 987765 6999999764221 11 12233333333322 23456778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. +|++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999988766555568999999999998864 8999999999998754
No 203
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=5.2e-36 Score=333.51 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=162.6
Q ss_pred ccEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..|+++|++++|++... .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 47999999999964321 3589999999999999999999999999999999999999999999876
Q ss_pred ----eEEEEecCCcCCC-CCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQT-GSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++. .|++||+.++.. .+ .++..+.++.+++.+.+ ..++.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRL-----------DHLPAQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHH
Confidence 3799999987765 599999986421 11 12334445555543322 3456689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++|||++++..+|++++|++|++++.
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999887665544 38999999999998878999999999999754
No 204
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-36 Score=338.27 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999642 46999999999999999999999999999999999999999999999872 69
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC---ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM---DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~---~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|++|++.++ ..|++||+.++..+ +.. +..+.++..++.+ .....+++.+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 999999877 47999999875321 211 1222333333221 012346678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .+|+|++|++|++++.|+++++.+
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999988887665544 4899999999999875 589999999999999999888754
No 205
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-36 Score=340.81 Aligned_cols=204 Identities=23% Similarity=0.355 Sum_probs=169.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 469999999999642 246899999999999999999999999999999999999999999999883
Q ss_pred EEEEecCCc--CCCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAW--IQTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~--i~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|+|. ++..|+++|+.++... ..+. .+++++..++.+ ....++.+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLE-----------RADYEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhhCCcccCCHHHHHHHHH
Confidence 699999985 5567999999886321 1221 222333333322 1235677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999886655444 38999999999999877999999999999999999988654
No 206
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=341.72 Aligned_cols=201 Identities=24% Similarity=0.349 Sum_probs=167.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
+++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 ml~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 77 (271)
T PRK13638 1 MLATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQ 77 (271)
T ss_pred CeEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHh
Confidence 3789999999963 46999999999999999999999999999999999999999999998762
Q ss_pred -EEEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 -TAYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 -~ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++. ++..|+.||+.++.. .+.. +.+++++..++... ....+.+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 78 QVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVA 146 (271)
T ss_pred heEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHH
Confidence 689999975 466789999987421 1221 12233444444221 23456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998866655556899999999999985 4899999999999999999887654
No 207
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-36 Score=338.80 Aligned_cols=200 Identities=24% Similarity=0.377 Sum_probs=168.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4889999999963 47999999999999999999999999999999999999999999999872 7
Q ss_pred EEEecCCcCCC-CCHHHHhccCCC-----C---Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSP-----M---DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~-----~---~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
+|++|++.++. .|+.||+.++.. + .. ++.+++++.+++.+. ...++.+||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHH
Confidence 99999987765 499999988631 1 11 123333444444322 2356778999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+. .+|++++|++|+++..|+++++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999998776654456899999999999876 489999999999999999988764
No 208
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=5e-36 Score=334.12 Aligned_cols=198 Identities=29% Similarity=0.455 Sum_probs=165.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------eE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------KT 693 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~~ 693 (1335)
|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 4799999999999999999999999999999999999999999999986 27
Q ss_pred EEEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 694 AYVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 694 ayv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++|++.++. .|++||+.++.... .+..+++++..+. + .....++..+||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l-------~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---L-------KEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---H-------HHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998765 49999998753221 1122333333221 1 11234567789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
++|+++||||||++||+.+++++.+.+.+... .++|+|++||+++++.. +|+|+++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999877665544 38999999999999875 899999999999999999887
No 209
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=3.8e-36 Score=339.29 Aligned_cols=201 Identities=32% Similarity=0.457 Sum_probs=167.1
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
.++++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 4699999999999999999999999999999999999999999998765
Q ss_pred ------eEEEEecCCcCC-CCCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAWIQ-TGSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~-~~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++ ..|++||+.++. ..+.+ +..+.++..++. .....++.+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-----------GKETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------chhhCChhhCChH
Confidence 369999998776 479999997642 11111 122223322221 1234567899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|++
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999988665555568999999999999865 899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 988643
No 210
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.8e-36 Score=354.25 Aligned_cols=188 Identities=30% Similarity=0.458 Sum_probs=160.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------------eEEEEecCCc
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------------KTAYVSQTAW 701 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------------~~ayv~Q~~~ 701 (1335)
..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 4689999999999999999999999999999999999999999999987 2799999998
Q ss_pred CCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 702 IQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 702 i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
+++ .|++||+.++... +. ++..+.++..+|.+. ....+.+|||||||||+|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~-----------~~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQW-----------ADKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 875 7999999986432 21 122334444444322 2346678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+||||||||||+.+++.+.+.+.+...+ ++|+|++|||++++. .+|+|++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999877765543 899999999999874 5899999999999999999999754
No 211
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.3e-36 Score=333.46 Aligned_cols=199 Identities=28% Similarity=0.394 Sum_probs=164.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------ 692 (1335)
+..|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (225)
T PRK10247 5 SPLLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQ 81 (225)
T ss_pred CceEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHh
Confidence 457999999999963 47999999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCcCCCCCHHHHhccCCCC-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQTGSIRENILFGSPM-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 693 -~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
++|++|++.+++.|++||+.++..+ +.++.++.++..++.+ +....++.+||||||||++||||
T Consensus 82 ~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~lara 151 (225)
T PRK10247 82 QVSYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRN 151 (225)
T ss_pred ccEEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHH
Confidence 6999999998888999999864221 1122233333333321 23356778999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEe-CCeEEEecChH
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMS-DGEILRAAPYH 836 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~-~G~i~~~g~~~ 836 (1335)
++++|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||++++++.||++++|+ ++..+++|+|+
T Consensus 152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 152 LQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999988876665444 4899999999999998899999995 66667777764
No 212
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.4e-36 Score=334.89 Aligned_cols=201 Identities=27% Similarity=0.404 Sum_probs=158.9
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 378999999996421 12689999999999999999999999999999999999999999999876
Q ss_pred --eEEEEecCCc--C-CCCCHHHHhccCCCC-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 692 --KTAYVSQTAW--I-QTGSIRENILFGSPM-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 692 --~~ayv~Q~~~--i-~~~Tv~eNIlfg~~~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
.++|++|++. + .+.|++||+.++... +.+..+++. .+.++.+... ....++++.+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGVGLP-EEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHCCCC-hhHhhCCchhcCHHHHHHH
Confidence 2799999983 3 467999999764211 111111110 1112222110 1234567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999998876655444 899999999999987 58999999999998754
No 213
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.2e-36 Score=320.17 Aligned_cols=166 Identities=36% Similarity=0.621 Sum_probs=151.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999883 799
Q ss_pred EecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 696 VSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 696 v~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
++|++++++.|++||+ +.+||||||||++||||++.+|+++|
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998889999998 45799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEec
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g 833 (1335)
|||||++||+.+++.+++.+.+. .+++|+|++||++++++.+|++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEV-LKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999998766554 4689999999999999889999999999998754
No 214
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-36 Score=356.69 Aligned_cols=204 Identities=26% Similarity=0.396 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCC---------------------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc
Q 000713 627 AISIKSASFSWEESS---------------------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG 685 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~---------------------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G 685 (1335)
.|+++|+++.|++.. ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 577788887776532 12379999999999999999999999999999999999999999
Q ss_pred EEEEcC-----------------eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCC
Q 000713 686 TIQVYG-----------------KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPY 740 (1335)
Q Consensus 686 ~i~v~g-----------------~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~ 740 (1335)
+|.++| +++|++|++.++ +.|++||+.++.. ++. ++..+.++.+++.+
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~------- 156 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN------- 156 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh-------
Confidence 999976 379999999876 4699999998632 121 12233444444432
Q ss_pred CCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cC
Q 000713 741 GDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AF 818 (1335)
Q Consensus 741 gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~ 818 (1335)
....++.+||||||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++. .+
T Consensus 157 ----~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 157 ----YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 23456779999999999999999999999999999999999999999887766543 5899999999999875 58
Q ss_pred CeEEEEeCCeEEEecChHHHHhc
Q 000713 819 DSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 819 D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998764
No 215
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-36 Score=338.72 Aligned_cols=206 Identities=22% Similarity=0.386 Sum_probs=168.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCe-------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYGK------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g~------- 692 (1335)
+..|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.
T Consensus 10 ~~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 10 QEVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred CceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999987 3 6899988762
Q ss_pred --------EEEEecCCcCCCCCHHHHhccCCCC----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 --------TAYVSQTAWIQTGSIRENILFGSPM----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 --------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
++|++|++.+++.|++||+.++... +++. .+++++..++.+.+ ....+.++.+||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~G 159 (259)
T PRK14274 87 DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGG 159 (259)
T ss_pred CHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHH
Confidence 6899999988888999999875321 1111 12233333332211 12345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++++|+++||||||++||++++..+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL-KEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999887755543 45799999999999876 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.++
T Consensus 239 ~~~~~~ 244 (259)
T PRK14274 239 NKMFSN 244 (259)
T ss_pred HHHhhC
Confidence 998643
No 216
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=336.79 Aligned_cols=200 Identities=28% Similarity=0.425 Sum_probs=168.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4889999999963 46999999999999999999999999999999999999999999999873 6
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCCC-------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPMD-------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~~-------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|++|++.+ ++.|++||+.++.... .++.++.++..++.+. ....+.+||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHH
Confidence 899999876 6789999998753211 1123334444444322 23466799999999999999
Q ss_pred HHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 766 ALY------QDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 766 Al~------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++ .+|+++||||||++||+.+++.+.+.+.+.. .+|+|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999987666554 46899999999999886 589999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+.+
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
No 217
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=7.6e-36 Score=339.57 Aligned_cols=207 Identities=26% Similarity=0.389 Sum_probs=168.5
Q ss_pred cEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------
Q 000713 627 AISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------- 691 (1335)
+|+++|++++|++. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 48899999999632 135799999999999999999999999999999999999999999999877
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 -------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 -------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
.++|++|++. + ...|++||+.++. .++. ++..++++..++.. ...+.++.+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 151 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQL 151 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhC
Confidence 2799999973 3 3579999996532 1221 12223333333311 1234567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++++|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++.+. .||++++|++|++++
T Consensus 152 SgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999988876665544 3899999999999987 589999999999999
Q ss_pred ecChHHHHhcch
Q 000713 832 AAPYHQLLASSK 843 (1335)
Q Consensus 832 ~g~~~~l~~~~~ 843 (1335)
.|+.+++.....
T Consensus 232 ~g~~~~~~~~~~ 243 (265)
T TIGR02769 232 ECDVAQLLSFKH 243 (265)
T ss_pred ECCHHHHcCCCC
Confidence 999999876433
No 218
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=332.74 Aligned_cols=205 Identities=24% Similarity=0.387 Sum_probs=167.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 36899999999963 47999999999999999999999999999999999999999999998872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC-ChHHHHHHH-HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM-DSHQYQETL-ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~-~~~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++|++.++. .|++||+.++... +....++.+ +.......+. .....++.+||||||||++||||++
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-------~~~~~~~~~LS~G~~qrl~la~al~ 153 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-------ERRIQRAGTMSGGEQQMLAIGRALM 153 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-------HHHhCchhhCCHHHHHHHHHHHHHH
Confidence 789999987775 5999999876422 111111111 1111111111 1123466789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++..
T Consensus 154 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 154 SQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred hCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999998876655556899999999999765 589999999999999999999864
No 219
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=339.93 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=170.3
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
.+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 16 ~~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 16 TEIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 3457999999999963 4699999999999999999999999999999999999974 899999877
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC-----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM-----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
.++|++|++.+++.|++||+.++... .. ++.++.++.+++.+.+. ...++.+.+||
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS 165 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLS 165 (267)
T ss_pred cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCC
Confidence 26999999988878999999875321 11 12233444444432221 12346678999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
||||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL-RQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-hcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999888765544 347899999999999864 7999999999999999
Q ss_pred ChHHHHh
Q 000713 834 PYHQLLA 840 (1335)
Q Consensus 834 ~~~~l~~ 840 (1335)
+.+++..
T Consensus 245 ~~~~~~~ 251 (267)
T PRK14235 245 DTEKMFT 251 (267)
T ss_pred CHHHHHh
Confidence 9988864
No 220
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-36 Score=341.38 Aligned_cols=202 Identities=26% Similarity=0.457 Sum_probs=169.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (275)
T PRK13639 1 ILETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRK 78 (275)
T ss_pred CEEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHh
Confidence 3789999999963 246999999999999999999999999999999999999999999998872
Q ss_pred -EEEEecCC--cCCCCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 693 -TAYVSQTA--WIQTGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 693 -~ayv~Q~~--~i~~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|++|++ .+++.|++||+.++.. ... ++..+.++.+++.. .....+.+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 79 TVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEG-----------FENKPPHHLSGGQKKRVA 147 (275)
T ss_pred heEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------hhcCChhhCCHHHHHHHH
Confidence 68999997 4677899999987531 111 12233444444421 123456789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||||++.+|++++|||||++||+.++..+.+.+.+...+|+|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999998876655456899999999999986 5899999999999999999998654
No 221
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=7.4e-36 Score=335.32 Aligned_cols=199 Identities=25% Similarity=0.378 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4889999999963 46999999999999999999999999999999999999999999999872
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCC---------------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMD---------------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~---------------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
++|++|++.++. .|++||+.++...+ +++.++.++..++ .....++..+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHH
Confidence 789999998776 59999998753211 0111222222222 22345677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||++++++. ||+|++|++|++++.|++
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSL-AGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 999999999999999999999999999999999998766544 347999999999999875 899999999999999999
Q ss_pred HHHHh
Q 000713 836 HQLLA 840 (1335)
Q Consensus 836 ~~l~~ 840 (1335)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 98864
No 222
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-36 Score=338.13 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=169.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC---CCC--CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE---VPH--TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~---~~~--~~G~i~v~g--------- 691 (1335)
.+++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ .+| ++|+|.++|
T Consensus 2 ~~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14245 2 VKIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78 (250)
T ss_pred cEEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999996 454 589998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|+||++.+++.|++||+.++... +. ++.+++++.+++.++++ +..++++.+|||||
T Consensus 79 ~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14245 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQ 151 (250)
T ss_pred HHHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHH
Confidence 27999999988888999999875321 11 12233444444432221 23456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 152 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~ 230 (250)
T PRK14245 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL-KKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTK 230 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999998766554 45799999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.++
T Consensus 231 ~~~~~ 235 (250)
T PRK14245 231 KIFTN 235 (250)
T ss_pred HHhcC
Confidence 98654
No 223
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-36 Score=347.74 Aligned_cols=206 Identities=21% Similarity=0.312 Sum_probs=170.1
Q ss_pred ccEEEEeeEEEecCCC-------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------
Q 000713 626 RAISIKSASFSWEESS-------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------- 691 (1335)
..|+++|++++|+... ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 4699999999996321 24689999999999999999999999999999999999999999999987
Q ss_pred ---------eEEEEecCCc--C-CCCCHHHHhccCC----CCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC
Q 000713 692 ---------KTAYVSQTAW--I-QTGSIRENILFGS----PMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV 751 (1335)
Q Consensus 692 ---------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~ 751 (1335)
+++|++|+|. + +..|+.+|+..+. .... ++..+.++.+++.++ .....+.
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~p~ 153 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE----------HYDRYPH 153 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH----------HhcCCCc
Confidence 3799999983 3 4569999986421 1222 123344444444221 1245678
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
+|||||||||+|||||+.+|+++|+||||++||+.++.++++.+.+... .|.|+|+||||++.+.. ||+|++|++|+|
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999987765544 48999999999999875 899999999999
Q ss_pred EEecChHHHHhc
Q 000713 830 LRAAPYHQLLAS 841 (1335)
Q Consensus 830 ~~~g~~~~l~~~ 841 (1335)
++.|+.+++.++
T Consensus 234 ve~g~~~~~~~~ 245 (327)
T PRK11308 234 VEKGTKEQIFNN 245 (327)
T ss_pred EEECCHHHHhcC
Confidence 999999999864
No 224
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=334.36 Aligned_cols=200 Identities=25% Similarity=0.397 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5889999999963 4799999999999999999999999999999999999999999999987 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.+.... +.+ +.++.++..++. .....+..+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-----------HLRDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-----------HHhhcchhhCCHHHHHHHHH
Confidence 799999987765 6999999875322 111 122222222221 22356678999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999999888765554456899999999998775 589999999999999999998864
No 225
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=339.38 Aligned_cols=206 Identities=24% Similarity=0.379 Sum_probs=169.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 11 ~~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 11 NIIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 457999999999964 469999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCCC---h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPMD---S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~---~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.++..|++||+.++.... . ++..++++.+++...+ ......++.+||||||
T Consensus 88 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 160 (269)
T PRK14259 88 DPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQ 160 (269)
T ss_pred CHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHH
Confidence 279999999887789999998864321 1 1223333433332111 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeC-----------
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSD----------- 826 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~----------- 826 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||++++|++
T Consensus 161 qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~ 239 (269)
T PRK14259 161 QRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL-KKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKV 239 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEecccccccccccc
Confidence 9999999999999999999999999999999998765544 45799999999999876 5899999996
Q ss_pred CeEEEecChHHHHhc
Q 000713 827 GEILRAAPYHQLLAS 841 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~ 841 (1335)
|++++.|+++++.+.
T Consensus 240 g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 240 GYLVEFNETKKIFNS 254 (269)
T ss_pred ceEEEeCCHHHHHhC
Confidence 678999999998653
No 226
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=334.19 Aligned_cols=200 Identities=24% Similarity=0.367 Sum_probs=165.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 47999999999999999999999999999999999999999999998763
Q ss_pred -----EEEEecCCcCCC-CCHHHHhccCC-C---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -----TAYVSQTAWIQT-GSIRENILFGS-P---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -----~ayv~Q~~~i~~-~Tv~eNIlfg~-~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.++. .|++||+.++. . .... +..+.++..++. ..++..+.+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-----------PYADRFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHH
Confidence 689999997765 69999996421 1 1111 122223333332 234456679999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. +|++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999988665544468999999999999864 89999999999999999888
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+.+
T Consensus 228 ~~~ 230 (242)
T PRK11124 228 FTQ 230 (242)
T ss_pred hcC
Confidence 643
No 227
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-36 Score=339.65 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=168.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
.+..++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 18 ~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457999999999963 469999999999999999999999999999999999864 6899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCCC----hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPMD----SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~----~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.+++.|++||+.++.... .. +..+.++.+++..++ ....+.++.+|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEV-------KDRLHSSALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcch-------HHHHhcCcccCCH
Confidence 379999999988889999998753211 11 112223333322111 1234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL-KEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH-hcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 44689999999999876 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++..+
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 9988653
No 228
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.5e-36 Score=330.00 Aligned_cols=188 Identities=35% Similarity=0.522 Sum_probs=156.1
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEE
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAY 695 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ay 695 (1335)
+++|++++|++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 246999999999999999999999999999999999999999999999873 699
Q ss_pred EecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 696 VSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 696 v~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
++|++. +++.|++||+.++.. .+.. +.++.++..++.+. +.+++.+||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHHH
Confidence 999973 567899999987532 2211 22334444444322 335667999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999998776555568999999999999876 89999999985
No 229
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-36 Score=337.01 Aligned_cols=205 Identities=27% Similarity=0.401 Sum_probs=167.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CC---CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PH---TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~---~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14239 4 PILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80 (252)
T ss_pred ceEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccc
Confidence 36899999999963 46999999999999999999999999999999999985 36 589999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . +.+ +..++++.+++.+.+. +..++++.+|||||
T Consensus 81 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14239 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQ 153 (252)
T ss_pred hHhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHH
Confidence 2799999999888999999986521 1 111 1222333443322111 23456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+++.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 232 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTK 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH-hhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998765544 34799999999999875 58999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 233 ~~~~~ 237 (252)
T PRK14239 233 QMFMN 237 (252)
T ss_pred HHHhC
Confidence 98654
No 230
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-36 Score=338.88 Aligned_cols=203 Identities=21% Similarity=0.297 Sum_probs=170.6
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
+...|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 4 ~~~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (265)
T PRK10253 4 SVARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 (265)
T ss_pred cccEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHh
Confidence 4567999999999963 46999999999999999999999999999999999999999999999873
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCC-CC-------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGS-PM-------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~-~~-------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.++ +.|++||+.++. +. .+ ++.+++++..++.+. ...++.+||||||
T Consensus 81 ~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~ 149 (265)
T PRK10253 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQR 149 (265)
T ss_pred hheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHH
Confidence 79999998765 579999998752 11 11 123334444444322 2356779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPK 229 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999887765544 4899999999999875 58999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 230 ~~~~ 233 (265)
T PRK10253 230 EIVT 233 (265)
T ss_pred HHhh
Confidence 8764
No 231
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5e-36 Score=329.65 Aligned_cols=190 Identities=24% Similarity=0.394 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
|+++|+++.|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999964 46999999999999 9999999999999999999999999999999987 3799
Q ss_pred EecCCcCCC-CCHHHHhccCCC---CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 696 VSQTAWIQT-GSIRENILFGSP---MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~---~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
++|++.++. .|++||+.+... .+ .++.++.++.+++.+.. ...+.+||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRA-----------KKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHH-----------hCchhhCCHHHHHHHHHHHHH
Confidence 999998765 599999986421 11 12234445555554322 245678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELG-EDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999987665544 4699999999999986 48999999999998764
No 232
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-36 Score=338.77 Aligned_cols=203 Identities=25% Similarity=0.353 Sum_probs=169.8
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------ 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------ 691 (1335)
++..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 8 ~~~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 8 SDTTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 (265)
T ss_pred CCceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHh
Confidence 4457999999999963 4799999999999999999999999999999999999999999999987
Q ss_pred -eEEEEecCCcC-CCCCHHHHhccCCC--------CC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -KTAYVSQTAWI-QTGSIRENILFGSP--------MD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -~~ayv~Q~~~i-~~~Tv~eNIlfg~~--------~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++-+ +..|+.||+.++.. .. .++.++.++.+++.+. +.....+||||||
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~ 153 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-----------AHRLVDSLSGGER 153 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCCHHHH
Confidence 27999999755 45699999987531 01 1223444555555332 2345668999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.....+ |+|+|++||+++++. .||+|++|++|++++.|+.+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 9999999999999999999999999999999888766655443 899999999999986 58999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 234 ~~~~ 237 (265)
T PRK10575 234 ELMR 237 (265)
T ss_pred HhcC
Confidence 8754
No 233
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-35 Score=339.32 Aligned_cols=202 Identities=25% Similarity=0.421 Sum_probs=170.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
.++++|++++|++. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. +
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58899999999632 36999999999999999999999999999999999999999999999873 7
Q ss_pred EEEecCCc--CCCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 694 AYVSQTAW--IQTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 694 ayv~Q~~~--i~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
+|++|++. +++.|++||+.++.. .+.+ +.++.++.+++.+. ....+.+||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL-----------RDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 99999973 567899999987532 2322 23444454454332 2345678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
||++.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++++. .||+|++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999988766655443 899999999999985 5899999999999999999998754
No 234
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-36 Score=327.66 Aligned_cols=190 Identities=29% Similarity=0.423 Sum_probs=158.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 468999999963 22 3999999999999999999999999999999999999999999883 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCCC-------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSPM-------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~~-------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++... ++++..++++.+++.+.. ...+.+||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-----------KRLPGELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99998775 5999999875321 122334455555554332 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+++++.+.+.+.+... .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999887665443 48999999999999865 8999999999998754
No 235
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=4.5e-36 Score=330.73 Aligned_cols=189 Identities=22% Similarity=0.414 Sum_probs=157.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 3789999999952 24799999999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
.++|++|++.++ ..|++||+.++.. .+. ++.++.++..++.+. ......+||||||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (214)
T TIGR02673 79 RRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHK-----------ADAFPEQLSGGEQQRVA 147 (214)
T ss_pred hheEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHH
Confidence 268999999876 4699999987522 111 223344444444332 23455689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
||||++.+|+++||||||++||+.++..+.+.+.+...+|+|+|++||+++++.. ||++++|++|+
T Consensus 148 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 148 IARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999988776655568999999999999875 89999999985
No 236
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=6e-36 Score=329.71 Aligned_cols=189 Identities=26% Similarity=0.405 Sum_probs=157.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 46999999999999999999999999999999999999999999998773
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.++.. .+. ++..+.++.+++.+. ....+.+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHK-----------HRALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH-----------hhCChhhcCHHHHHHHHH
Confidence 799999997765 699999987532 111 123344444444332 234566899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
|||++.+|+++||||||++||+++++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988766554568999999999999875 899999999974
No 237
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=338.21 Aligned_cols=207 Identities=26% Similarity=0.359 Sum_probs=172.2
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
....|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 17 EEIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 3457999999999953 579999999999999999999999999999999999986 5899998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++..|++||+.++... ++ ++..++++.+++.+++. +..++.+.+|||
T Consensus 94 ~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~ 166 (267)
T PRK14237 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSG 166 (267)
T ss_pred CChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCH
Confidence 26999999988888999999875321 11 12233444444432221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 167 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 245 (267)
T PRK14237 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL-KKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDK 245 (267)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999888766554 45799999999999875 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
++++...
T Consensus 246 ~~~~~~~ 252 (267)
T PRK14237 246 TRNIFTN 252 (267)
T ss_pred HHHHhcC
Confidence 9998653
No 238
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=336.47 Aligned_cols=198 Identities=27% Similarity=0.457 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcC------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYG------------ 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g------------ 691 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 6899999999963 47999999999999999999999999999999999999886 49999887
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhccCCCC------------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 ------KTAYVSQTAWIQT-GSIRENILFGSPM------------DS---HQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~-~Tv~eNIlfg~~~------------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|+||++.++. .|++||+.++... .+ .+.++.++..++.+ .+..+
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH-----------FAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHH-----------HHhCC
Confidence 2699999987665 6999999875310 11 12233333333322 23456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCC
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDG 827 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G 827 (1335)
+.+||||||||++||||++.+|+++||||||++||+++.+.+.+.+.+... +|+|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 778999999999999999999999999999999999999999877665543 4899999999999865 58999999999
Q ss_pred eEEEecChHHH
Q 000713 828 EILRAAPYHQL 838 (1335)
Q Consensus 828 ~i~~~g~~~~l 838 (1335)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999986
No 239
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=335.00 Aligned_cols=205 Identities=24% Similarity=0.381 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~ 79 (251)
T PRK14249 3 PKIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79 (251)
T ss_pred ceEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccC
Confidence 46899999999963 46999999999999999999999999999999999999987 69998765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC---C-hHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM---D-SHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++... . .++ .++.++..++.+.+ ....++++.+|||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq 152 (251)
T PRK14249 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQ 152 (251)
T ss_pred hHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHH
Confidence 27999999998888999999876422 1 111 12222223332111 123456788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++.+.|+.+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~ 231 (251)
T PRK14249 153 QQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL-KQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999888755443 468999999999999875 7999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14249 232 EIFSR 236 (251)
T ss_pred HHHhC
Confidence 88643
No 240
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-36 Score=337.45 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=169.3
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
...|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 10 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 86 (258)
T PRK14268 10 QPQIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86 (258)
T ss_pred ceeEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 799999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. .+.+. .+++++.+++..++ ....++++.+|||||
T Consensus 87 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~ 159 (258)
T PRK14268 87 DVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQ 159 (258)
T ss_pred hHHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHH
Confidence 2689999998888999999987532 12211 22333333332111 123356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++++. .||+|++|++|++++.|+++
T Consensus 160 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 238 (258)
T PRK14268 160 QQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL-KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTR 238 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988766554 35799999999999886 48999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++.+.
T Consensus 239 ~~~~~ 243 (258)
T PRK14268 239 QIFHN 243 (258)
T ss_pred HHhcC
Confidence 88643
No 241
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=6.2e-36 Score=346.37 Aligned_cols=187 Identities=24% Similarity=0.352 Sum_probs=158.7
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEEEecCCcCCC-CCHHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAYVSQTAWIQT-GSIRE 709 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ayv~Q~~~i~~-~Tv~e 709 (1335)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .+||+||++.++. .|++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 4699999999999999999999999999999999999999999999988 2799999987764 59999
Q ss_pred HhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 710 NILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 710 NIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
|+.+.... .. ++.+++++.+++.+. ...+..+||||||||++||||++++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 99864221 11 123344454444322 2346678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|+++..|+++++.+
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999988766655568999999999999864 89999999999999999998854
No 242
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=334.75 Aligned_cols=205 Identities=22% Similarity=0.354 Sum_probs=170.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 79 (251)
T PRK14270 3 IKMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79 (251)
T ss_pred cEEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccccc
Confidence 46899999999963 4699999999999999999999999999999999999875 799999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.|+... +. ++..++++.+++.+++. ...+.++.+|||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 152 (251)
T PRK14270 80 VVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVK-------DDLKKSALKLSGGQ 152 (251)
T ss_pred HHHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 26999999998889999999875321 11 12334555555433222 12345678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 153 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~-~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 231 (251)
T PRK14270 153 QQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL-KKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTE 231 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-HhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHH
Confidence 99999999999999999999999999999999998765544 346999999999998765 8999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 232 ~~~~~ 236 (251)
T PRK14270 232 KIFLE 236 (251)
T ss_pred HHhcC
Confidence 98643
No 243
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-36 Score=336.43 Aligned_cols=204 Identities=26% Similarity=0.403 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g~--------- 692 (1335)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 5899999999963 479999999999999999999999999999999999987 47999998772
Q ss_pred ------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.+++.|++||+.++... +.+ +.+++++..++..+. ....++++.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 6899999988889999999875321 111 223334443332111 1123467789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. +|+|++|++|++++.|+.++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 232 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL-KHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEE 232 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH-HcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999888766554 457999999999999765 89999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+...
T Consensus 233 ~~~~ 236 (251)
T PRK14251 233 MFIA 236 (251)
T ss_pred HHhC
Confidence 8643
No 244
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=327.61 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=166.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
++++|++++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999963 22 3999999999999999999999999999999999999999999873 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCC--C--C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSP--M--D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~--~--~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++.. . . .++..+.++..++.+.+ .....+||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLL-----------ARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHH-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99987765 599999987531 1 1 12234445555554333 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+.. +|++++|++|++.+.|+++++...
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999887665544 48999999999999865 799999999999999999988754
No 245
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.3e-35 Score=336.03 Aligned_cols=199 Identities=26% Similarity=0.416 Sum_probs=167.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 678999999964 4799999999999999999999999999999999999999999999987 279
Q ss_pred EEecCCc-CCCCCHHHHhccCCC-C------C-h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 695 YVSQTAW-IQTGSIRENILFGSP-M------D-S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 695 yv~Q~~~-i~~~Tv~eNIlfg~~-~------~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|++|++. .+..|++||+.++.. . . . ++..+.++.+++.+ ....++.+||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSH-----------LADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCCHHHHHHHH
Confidence 9999985 457899999987531 1 0 1 12233333333322 234567789999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
||||++.+|+++||||||++||+.+...+.+.+.+...+|+|+|++||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 999999999999999999999999999998776655556899999999999985 589999999999999999988754
No 246
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.2e-35 Score=335.49 Aligned_cols=200 Identities=28% Similarity=0.384 Sum_probs=166.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 4799999999999999999999999999999999999999999998876
Q ss_pred ----------eEEEEecCCcCC-CCCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 ----------KTAYVSQTAWIQ-TGSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 ----------~~ayv~Q~~~i~-~~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
.++|++|++.++ ..|++||+.++.. .+.. +..+.++..++.+ ..++.+.+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLAD-----------KADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChh-----------HhhcChhh
Confidence 278999998776 5799999987521 1111 2233333333322 23456778
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
||||||||++||||++++|+++||||||++||+.++..+++.+.+... .|+|+|++||+++.+. .+|++++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999876665544 3899999999999985 58999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999988643
No 247
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=334.41 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g~--------- 692 (1335)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 5899999999964 4699999999999999999999999999999999999974 7999999873
Q ss_pred ----EEEEecCCcC-CCCCHHHHhccCCCC-----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 ----TAYVSQTAWI-QTGSIRENILFGSPM-----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ----~ayv~Q~~~i-~~~Tv~eNIlfg~~~-----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++.+ ++.|++||+.++... +.. +..+.++.+++.+.+ .......+.+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 7999999864 578999999875321 111 122333333332111 1123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL-KKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTRE 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHH
Confidence 9999999999999999999999999999999998876654 45899999999999875 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14247 232 VFTN 235 (250)
T ss_pred HHcC
Confidence 8643
No 248
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=333.97 Aligned_cols=203 Identities=25% Similarity=0.381 Sum_probs=167.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 3 KISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred eEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 5899999999963 4699999999999999999999999999999999998763 699999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++... +. ++..+.++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHHH
Confidence 26999999988779999999876321 11 12223333444332221 123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999987755544 458999999999998765 89999999999999999988
Q ss_pred HHh
Q 000713 838 LLA 840 (1335)
Q Consensus 838 l~~ 840 (1335)
+..
T Consensus 232 ~~~ 234 (250)
T PRK14240 232 LFT 234 (250)
T ss_pred HHh
Confidence 764
No 249
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2e-35 Score=336.40 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=168.5
Q ss_pred ccEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------
Q 000713 626 RAISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------- 691 (1335)
..|+++|++++|+.. +++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 468999999999631 124799999999999999999999999999999999999999999999986
Q ss_pred -----eEEEEecCCc--C-CCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 -----KTAYVSQTAW--I-QTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 -----~~ayv~Q~~~--i-~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++. + ...|+.+|+.++.. ... ++..++++.+++.++. ....+.+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~ 152 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH----------ASYYPHMLAP 152 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------HhcCchhcCH
Confidence 3799999974 3 34599999875321 121 1233444555542211 1235568999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999998887666544 48999999999999875 8999999999999999
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+++++.+.
T Consensus 233 ~~~~~~~~ 240 (267)
T PRK15112 233 STADVLAS 240 (267)
T ss_pred CHHHHhcC
Confidence 99998764
No 250
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=334.73 Aligned_cols=195 Identities=30% Similarity=0.479 Sum_probs=162.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEec
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQ 698 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q 698 (1335)
+++++|++++|++ +++++|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ++|++|
T Consensus 1 ml~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q 77 (255)
T PRK11248 1 MLQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQ 77 (255)
T ss_pred CEEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeC
Confidence 3789999999963 47999999999999999999999999999999999999999999999873 799999
Q ss_pred CCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 699 TAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 699 ~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++.++. .|++||+.++.. ... ++..+.++..++.+. ...++.+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 78 NEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGA-----------EKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred CCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hhCChhhCCHHHHHHHHHHHHHhcC
Confidence 987765 699999987532 111 123334444444322 2346778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEe--CCeEEEecCh
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMS--DGEILRAAPY 835 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~--~G~i~~~g~~ 835 (1335)
|+++||||||++||+.+++.+.+.+.+... .|+|+|++|||++++.. ||+|++|+ +|++++.++.
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999999999999887665433 58999999999998864 89999998 5999988764
No 251
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.6e-35 Score=328.59 Aligned_cols=196 Identities=24% Similarity=0.306 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~Q 698 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 4799999999999999999999999999999999999999999999987 3689999
Q ss_pred CCcCC-CCCHHHHhccCC---CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 699 TAWIQ-TGSIRENILFGS---PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 699 ~~~i~-~~Tv~eNIlfg~---~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
++.++ ..|++||+.++. ..++.+..+.++..++.+. ...++.+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNT-----------GKKKAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHH-----------HhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 98765 479999997642 2233445555565555432 23456789999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .||+|++|++|++.+.|++++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999998776655556899999999999986 589999999999999998764
No 252
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.2e-35 Score=333.60 Aligned_cols=199 Identities=24% Similarity=0.264 Sum_probs=161.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g~------------- 692 (1335)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999995 799999999872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCC----------Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CCCH
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPM----------DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLSG 755 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSG 755 (1335)
++|++|++.++. .|++||+.+.... +. ++..+.++..++.++. .+.+.. +|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~~LS~ 147 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF----------LNRSVNEGFSG 147 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh----------cccccccCcCH
Confidence 689999987764 5999999764211 11 1122233333332111 123344 5999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEEec
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~g 833 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999988766555568999999999999875 7999999999999999
Q ss_pred ChHHHH
Q 000713 834 PYHQLL 839 (1335)
Q Consensus 834 ~~~~l~ 839 (1335)
+++++.
T Consensus 228 ~~~~~~ 233 (243)
T TIGR01978 228 DVELAK 233 (243)
T ss_pred CHHHhc
Confidence 987653
No 253
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.2e-35 Score=343.72 Aligned_cols=199 Identities=27% Similarity=0.413 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~a 694 (1335)
.++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+|
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 3789999999963 4699999999999999999999999999999999999999999999988 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHH
Q 000713 695 YVSQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARA 766 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARA 766 (1335)
|+||++.++. .|++||+.+... .+. ++.++.++..++.+ ..+++..+||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRP-----------EQHKKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999998764 599999975322 111 12333333333322 2346678999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 767 LYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 767 l~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++++|++++|||||+|||+.+++.+++.+... .+++|+|++||+++.+.. ||+|++|++|+++..|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHh-cCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999998866544 457999999999998865 89999999999999999999854
No 254
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=346.14 Aligned_cols=207 Identities=20% Similarity=0.336 Sum_probs=167.8
Q ss_pred cEEEEeeEEEecCCCC-CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC----CCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEESSS-KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP----HTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~-~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~----~~~G~i~v~g~--------- 692 (1335)
.++++|++++|+.... ..+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 4899999999965322 358999999999999999999999999999999999997 48999999872
Q ss_pred --------EEEEecCCc---CCCCCHHHHhccC----CCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 693 --------TAYVSQTAW---IQTGSIRENILFG----SPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 693 --------~ayv~Q~~~---i~~~Tv~eNIlfg----~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++|++|+|. .+..|+.+++... ...+. ++..+.++..++.+. ....++++.+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhC
Confidence 799999984 2446887776432 11121 122333444443210 12345678899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~ 831 (1335)
||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+... .|.|+|+||||++.+. .+|+|++|++|+|++
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999987766544 5899999999999985 589999999999999
Q ss_pred ecChHHHHhc
Q 000713 832 AAPYHQLLAS 841 (1335)
Q Consensus 832 ~g~~~~l~~~ 841 (1335)
.|+.+++.++
T Consensus 235 ~g~~~~~~~~ 244 (326)
T PRK11022 235 TGKAHDIFRA 244 (326)
T ss_pred ECCHHHHhhC
Confidence 9999999864
No 255
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.6e-35 Score=313.15 Aligned_cols=162 Identities=27% Similarity=0.495 Sum_probs=146.7
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~ 705 (1335)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++.+++.
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 4689999999632 4699999999999999999999999999999999999999999999987 79999999998889
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
|++||+.++ ++.+||||||||++||||++++|+++||||||++||+
T Consensus 79 tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 79 TLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred cHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 999999864 2358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
++.+.+.+.+.+. ++|+|++||+.+....||++++|++|.
T Consensus 125 ~~~~~l~~~l~~~---~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 125 ESEDRLYQLLKEL---GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHh---CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999888755432 689999999998877799999998763
No 256
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=2.1e-35 Score=327.35 Aligned_cols=191 Identities=23% Similarity=0.407 Sum_probs=158.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999942 247999999999999999999999999999999999999999999998772
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.+ ++.|++||+.++.. .+.+ +.++.++..++.+. ....+.+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHH
Confidence 6899999876 57899999987532 2211 12233333333322 234567899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++++.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999987666554568999999999999875 79999999999853
No 257
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-35 Score=348.77 Aligned_cols=198 Identities=25% Similarity=0.392 Sum_probs=167.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------- 691 (1335)
|++ |++++|++ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 667 89999963 2 23 99999999999999999999999999999999999999999876
Q ss_pred -eEEEEecCCcCC-CCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 692 -KTAYVSQTAWIQ-TGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 692 -~~ayv~Q~~~i~-~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
.++|++|++.++ +.|++||+.++.. .+.++.+++++..++.+. ...++.+|||||||||+||||++
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPL-----------LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHHHHHH
Confidence 268999999876 5699999998743 223344555555555332 33566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+++||||||++||+..++.+.+.+.+...+ |+|+|+||||++++. .||+|++|++|++++.|+++++..+.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999998876655444 899999999999875 48999999999999999999997654
No 258
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.3e-35 Score=316.07 Aligned_cols=160 Identities=37% Similarity=0.644 Sum_probs=147.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------eEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------KTA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------~~a 694 (1335)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999642 24699999999999999999999999999999999999999999999987 379
Q ss_pred EEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
|++|++++++.|++||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~l 118 (173)
T cd03246 80 YLPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRIL 118 (173)
T ss_pred EECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 99999998888999998 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+..||++++|++|++
T Consensus 119 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 119 VLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999988776555568999999999998888999999999974
No 259
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=334.23 Aligned_cols=204 Identities=23% Similarity=0.362 Sum_probs=166.8
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 6899999999963 4699999999999999999999999999999999999987 499999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC-----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM-----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~-----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++. .|++||+.++... ..+ +.+++++..++.+.+. ....+++.+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 2689999998775 5999999875321 111 1122233333221111 1235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999998766654 34799999999999876 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14267 233 RKVFEN 238 (253)
T ss_pred HHHHhC
Confidence 988643
No 260
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=336.42 Aligned_cols=206 Identities=22% Similarity=0.352 Sum_probs=168.8
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
...++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 22 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 22 KVVFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred ceEEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 347999999999963 469999999999999999999999999999999999987 6999999877
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CChH-H----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MDSH-Q----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~-~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++..|++||+.++.. .+.+ . ..+.++..++..++. ...++++.+||||
T Consensus 99 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~-------~~~~~~~~~LSgG 171 (271)
T PRK14238 99 SVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELK-------DRLHDNAYGLSGG 171 (271)
T ss_pred cHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHH-------HHHhcCcccCCHH
Confidence 2799999998888899999987532 1111 1 112222222211221 2345678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++. .||++++|++|++++.|++
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 250 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL-KKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDT 250 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH-HcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988755544 44799999999999976 4899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++...
T Consensus 251 ~~~~~~ 256 (271)
T PRK14238 251 DKIFSN 256 (271)
T ss_pred HHHHcC
Confidence 988654
No 261
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-35 Score=334.17 Aligned_cols=205 Identities=22% Similarity=0.350 Sum_probs=170.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 9 ~~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 9 TVLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred eEEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 46999999999963 469999999999999999999999999999999999976 4799999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCCC------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPMD------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+++|++|++.+++.|+.||+.++.... .++..++++.+++..++. ...++++.+|||||||
T Consensus 86 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~q 158 (264)
T PRK14243 86 PVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQ 158 (264)
T ss_pred hHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHH
Confidence 279999999888789999998764321 122333445555543332 1235677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe---------CCeE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS---------DGEI 829 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~---------~G~i 829 (1335)
|++||||++.+|+++||||||++||+.+++.+.+.+... .+++|+|++||+++.+.. ||+|++|+ +|++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL-KEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 999999999999999999999999999999988765544 446899999999998764 79999998 8999
Q ss_pred EEecChHHHHhc
Q 000713 830 LRAAPYHQLLAS 841 (1335)
Q Consensus 830 ~~~g~~~~l~~~ 841 (1335)
++.|+.+++.+.
T Consensus 238 ~~~~~~~~~~~~ 249 (264)
T PRK14243 238 VEFDRTEKIFNS 249 (264)
T ss_pred EEeCCHHHHHhC
Confidence 999999998653
No 262
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.6e-33 Score=321.34 Aligned_cols=356 Identities=15% Similarity=0.166 Sum_probs=283.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHH
Q 000713 964 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTN 1043 (1335)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~ 1043 (1335)
++|++..+.-++--+.......+.-..++.++++++...+..-.+.-..|+++||+..|++.+|...-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 44566666666666677788899999999999999999888888889999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHH
Q 000713 1044 ACSNLGVLAVVTWQVLFVS-IPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNL 1122 (1335)
Q Consensus 1044 ~~~~l~vi~~~~~~~~~~~-ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~ 1122 (1335)
..++.+...+.+|++.+.+ ..++++...+--.+.+.+|...+--...|..+++||.|-++|.+--+.||.+++|.+...
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 8888888888888876533 333333333333344455566666667889999999999999999999999999999999
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 000713 1123 DLIDTNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVLLPPGTFTPGFIGMALSYGLSLNSSLVMSI-QNQCTLAN 1200 (1335)
Q Consensus 1123 ~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v-~~~~~le~ 1200 (1335)
..-+...+..........|-..-+.++.+++++.. +..+.....|..+.-.+.+++--++.....+.-+. -.+.++..
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq 305 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQ 305 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhH
Confidence 99999999999899999999999988888777633 33333344455453333333333344444444444 45678888
Q ss_pred HhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccc-eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHH
Q 000713 1201 YIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVG-KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTT 1279 (1335)
Q Consensus 1201 ~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G-~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKST 1279 (1335)
..-|.+|+.+..+-++|.... + +.-|..| .++++||+|+|..+.++||+|+||++++||||+|+|||||||||
T Consensus 306 ~~~Sa~Rl~~i~~q~~e~~~~-~-----~~~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 306 VIASARRLNDILDQKPEVTFP-D-----EQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred HHHHHHHHhhhccCCcccCCC-c-----cccCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 999999999988766665432 1 1112223 89999999999988889999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCeEEECCeecCCcC------CCceeecccccccccHHhh
Q 000713 1280 LRGALFRLIEPARGKILVDGKLAEYDE------PMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1280 Li~aL~Rl~e~~~G~I~IDGvdI~~~~------~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|++.|.|-++|++|+|...|.+++..+ .+++++|.+.||+||+|||
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~N 431 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDN 431 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHH
Confidence 999999999999999999999998643 5788999999999999997
No 263
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-35 Score=332.16 Aligned_cols=203 Identities=24% Similarity=0.350 Sum_probs=167.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 5889999999963 4699999999999999999999999999999999999986 599999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCCC---C-hH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSPM---D-SH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
.++|++|++.++..|++||+.++... . ++ +..+.++..++.+++. ...++.+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 26899999988889999999875321 1 11 1222333334332221 2345677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l 838 (1335)
||+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL-KKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVI 231 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999888755544 346899999999999775 899999999999999998887
Q ss_pred Hh
Q 000713 839 LA 840 (1335)
Q Consensus 839 ~~ 840 (1335)
..
T Consensus 232 ~~ 233 (249)
T PRK14253 232 FS 233 (249)
T ss_pred Hc
Confidence 54
No 264
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.4e-35 Score=326.57 Aligned_cols=188 Identities=34% Similarity=0.444 Sum_probs=157.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------------- 692 (1335)
++++|++++|++ +++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 46999999999999999999999999999999999999999999999873
Q ss_pred EEEEecCCcCCC-CCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++|++|++.++. .|++||+.++. ..+.+ +..+.++.+++.+ .....+.+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLAD-----------KADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhhCccccCHHHHHHHHH
Confidence 689999998764 79999998753 12221 2233333333322 2345667999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+.. ||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988766555568999999999999864 899999999974
No 265
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.8e-35 Score=345.28 Aligned_cols=209 Identities=19% Similarity=0.342 Sum_probs=169.5
Q ss_pred cccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcC---------
Q 000713 625 NRAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYG--------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g--------- 691 (1335)
+..++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45799999999996432 246899999999999999999999999999999999999996 99999987
Q ss_pred --------eEEEEecCCc--C-CCCCHHHHhccCC----CCChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 --------KTAYVSQTAW--I-QTGSIRENILFGS----PMDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 --------~~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
.++|++|+|. + +..|+.+|+.... ..+.+. ..+.++..++ +.+ ...++..+.+
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~~p~~ 161 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKMYPHE 161 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcCCccc
Confidence 3799999983 3 4568988885421 222221 1222222222 221 1235678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~ 830 (1335)
|||||||||+||||++.+|+++|+||||+|||+.++..+.+.+.+... .|.|+|+||||++.+. .+|+|++|++|+|+
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~iv 241 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM 241 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999986665544 3899999999999986 58999999999999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+.+++.+.
T Consensus 242 e~g~~~~i~~~ 252 (330)
T PRK09473 242 EYGNARDVFYQ 252 (330)
T ss_pred EECCHHHHHhC
Confidence 99999999764
No 266
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=335.12 Aligned_cols=206 Identities=25% Similarity=0.383 Sum_probs=169.9
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g------- 691 (1335)
....++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 22 ~~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~ 98 (272)
T PRK14236 22 EQTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98 (272)
T ss_pred CCcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence 3457999999999963 469999999999999999999999999999999999987 4899999876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC----Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM----DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.+++.|++||+.++... .+ ++.+++++..++.+++. +..++++.+|||
T Consensus 99 ~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 171 (272)
T PRK14236 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSG 171 (272)
T ss_pred cCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCH
Confidence 36899999988878999999875321 11 11233333333332221 234567889999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++.+|+++||||||++||+.++..+.+.+.+.. +++|+|++||+++++. .||+|++|++|++++.|+
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~ 250 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-SKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGD 250 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999998887665543 4789999999999875 589999999999999999
Q ss_pred hHHHHh
Q 000713 835 YHQLLA 840 (1335)
Q Consensus 835 ~~~l~~ 840 (1335)
++++..
T Consensus 251 ~~~~~~ 256 (272)
T PRK14236 251 TDTLFT 256 (272)
T ss_pred HHHHhc
Confidence 988764
No 267
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=344.87 Aligned_cols=207 Identities=19% Similarity=0.330 Sum_probs=168.1
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC----CCCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP----HTQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~----~~~G~i~v~g---------- 691 (1335)
.++++|++++|+... ...+++|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 589999999996422 2468999999999999999999999999999999999986 5899999987
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhccCC---CC------C----hHHHHHHHHHhccHHHHhhCCCCCCccccC
Q 000713 692 -------KTAYVSQTAWI---QTGSIRENILFGS---PM------D----SHQYQETLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 692 -------~~ayv~Q~~~i---~~~Tv~eNIlfg~---~~------~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
.++|++|+|.. +..||.+|+.+.. .. + .++..+.++..+|.+. .....+
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhC
Confidence 27999999852 3569999996421 00 1 1122334444444211 012346
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.+.+|||||||||+|||||+.+|+++|+||||++||+.++.++.+.+.+... .|.|+|+||||++.+.. ||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 7789999999999999999999999999999999999999999987766544 48999999999999864 899999999
Q ss_pred CeEEEecChHHHHhc
Q 000713 827 GEILRAAPYHQLLAS 841 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~ 841 (1335)
|+|++.|+.+++.+.
T Consensus 235 G~ive~g~~~~i~~~ 249 (330)
T PRK15093 235 GQTVETAPSKELVTT 249 (330)
T ss_pred CEEEEECCHHHHHhC
Confidence 999999999998764
No 268
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=323.53 Aligned_cols=444 Identities=20% Similarity=0.248 Sum_probs=309.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcC-----CCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 000713 371 RYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLM-----HSGGEIMNYVTVDAYRIGEFPFWFH-QIWTTSVQLCIALII 444 (1335)
Q Consensus 371 ~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~-----~s~G~IvNlms~D~~ri~~~~~~~h-~~w~~plqi~lal~l 444 (1335)
..|..+++.++.|..|...+.+|-|.-...-+-. +..-..=..++.|+..+.+....+. .+....++++--..+
T Consensus 106 ~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~i 185 (604)
T COG4178 106 QTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGI 185 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999876433221 1112344678888888877654333 333444555555567
Q ss_pred HHHHHHHHH---------HHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHHHHHHHccHHHHHHhccH
Q 000713 445 LFHAVGLAT---------IAA--LVVITITVLCNTPL----AKLQHKFQTKLMVA-QDERLKACSEAFVNMKVLKLYAWE 508 (1335)
Q Consensus 445 L~~~lG~a~---------l~g--l~v~vl~~~~~~~~----~~~~~~~q~~~m~~-~D~R~~~~sEiL~~ik~IKl~awE 508 (1335)
||..-|..+ ++| +.++++.++....+ +|...+...+..+. -|-|- ....+.++-..|-+|.-|
T Consensus 186 Lw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~-~Lvrv~enaE~IAly~GE 264 (604)
T COG4178 186 LWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY-SLVRVRENAEAIALYRGE 264 (604)
T ss_pred HHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH-HHHHHHhhHHHHHHhcCc
Confidence 775544221 111 11222333333333 33333332222222 23343 344677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Q 000713 509 THFKNAIEILRNVEYKWLSAVQL----RKAYNGFLFWSSPVLVSTATFGACYFLNVPLYASNVFTFVATLRLVQDPIRII 584 (1335)
Q Consensus 509 ~~f~~~I~~~R~~El~~l~~~~~----~~a~~~~~~~~~p~lv~~~tF~~~~l~~~~Lt~~~vFt~lalf~~L~~pl~~l 584 (1335)
+.-.+++.+.=..=++..++... +..+.....++++++-.+ .++=.+..++++-+...++-..|+.+...++.+
T Consensus 265 ~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~l--i~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 265 KVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPIL--IAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHH--hccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 87777665422221211111111 111111112222211111 111124568899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-CC-ccccccc-----CCCCCCcccEEEEeeEEEecCCCCCCceeeeeeEeeCCc
Q 000713 585 PDVIGVFIQANVAFSRIVNFLEAPE-LQ-SMNIRQK-----GNIENVNRAISIKSASFSWEESSSKPTMRNISLEVRPGQ 657 (1335)
Q Consensus 585 p~~i~~~~qa~vS~~RI~~fL~~~e-~~-~~~~~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~ 657 (1335)
-+.+..+.+-+.++.|+.+|-..-| .+ ++..+.. ...+..+..|+++|++..-++. ++.+++.|+++++||
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~ 420 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGE 420 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCC
Confidence 9999999999999999999985321 00 1110000 0000015689999999988753 478999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCCCHHHHhccCCC---CChHHHHHHHHHhccH
Q 000713 658 KVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTGSIRENILFGSP---MDSHQYQETLERCSLI 732 (1335)
Q Consensus 658 ~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~ 732 (1335)
.+.|.||||||||||+++|.|+.|--+|+|.... .+-|+||.|.++.||.||-|.+... ++++...+++.+|+|.
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~ 500 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLG 500 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcH
Confidence 9999999999999999999999999999998863 3799999999999999999998753 5678899999999999
Q ss_pred HHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCC
Q 000713 733 KDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQV 812 (1335)
Q Consensus 733 ~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~ 812 (1335)
+-.+.+..-+ +-...||+|||||+++||.++++|++++|||.|||||+.+...+++.+ +..+.+.|+|-|.|+.
T Consensus 501 ~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l-~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 501 DLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLL-KEELPDATVISVGHRP 574 (604)
T ss_pred HHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHH-HhhCCCCEEEEeccch
Confidence 8888765433 345689999999999999999999999999999999999999998754 5567899999999998
Q ss_pred CccccCCeEEEEe
Q 000713 813 DFLPAFDSVLLMS 825 (1335)
Q Consensus 813 ~~l~~~D~iivl~ 825 (1335)
......++.+-+.
T Consensus 575 tl~~~h~~~l~l~ 587 (604)
T COG4178 575 TLWNFHSRQLELL 587 (604)
T ss_pred hhHHHHhhheeec
Confidence 8777666655443
No 269
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-35 Score=331.76 Aligned_cols=204 Identities=25% Similarity=0.354 Sum_probs=167.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|
T Consensus 5 ~~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 5 IILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred ceEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 47999999999963 4799999999999999999999999999999999998753 489998876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++... +.. +..++++..++.+++ .+..++.+.+|||||
T Consensus 82 ~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 154 (253)
T PRK14261 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQ 154 (253)
T ss_pred hhhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHH
Confidence 26899999988888999999986432 111 112223333332222 123567788999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|+.+
T Consensus 155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~-~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~ 233 (253)
T PRK14261 155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL-KKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHH
Confidence 99999999999999999999999999999999987665544 34689999999999986 48999999999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 234 ~~~~ 237 (253)
T PRK14261 234 QIFE 237 (253)
T ss_pred HHHh
Confidence 8764
No 270
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.1e-35 Score=329.66 Aligned_cols=199 Identities=26% Similarity=0.424 Sum_probs=169.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQT 704 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~ 704 (1335)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 6899999999963 4699999999999999999999999999999999999999999999987 5899999986643
Q ss_pred ---CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 705 ---GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 705 ---~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
.|+++|+.+......++..++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 81 TLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccChhHHHHHhccccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 4899998765434445566667776665433 23567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 782 AVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||+.+.+.+++.+.+...+ |+|+|++||+++++. .+|+|++|++ ++++.|+++++.+
T Consensus 150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999998766654444 899999999999985 5899999965 7999999998864
No 271
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.7e-35 Score=332.74 Aligned_cols=210 Identities=23% Similarity=0.356 Sum_probs=166.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 5 ~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 5 PLLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred ceEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 46999999999964 47999999999999999999999999999999999999999999988762
Q ss_pred ---------EEEEecCCc--C-CCCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 ---------TAYVSQTAW--I-QTGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 ---------~ayv~Q~~~--i-~~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++. + .+.|+.||+.+... .....+.+..+. ..+.++.++.+ .+..++++.+|||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~l~~~~l~-~~~~~~~~~~LS~Gq~q 158 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT--AGDWLERVEID-AARIDDLPTTFSGGMQQ 158 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH--HHHHHHHcCCC-hhHHhCCCccCCHHHHH
Confidence 689999974 2 35689999864210 000001111111 11223333322 12456778899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
|++||||++.+|+++||||||++||+.+.+.+.+.+.....+ |.|+|++||+++++. .||+|++|++|++++.|++++
T Consensus 159 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 238 (258)
T PRK11701 159 RLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQ 238 (258)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999998766554443 899999999999997 589999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+..+
T Consensus 239 ~~~~ 242 (258)
T PRK11701 239 VLDD 242 (258)
T ss_pred HhcC
Confidence 8643
No 272
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=332.25 Aligned_cols=204 Identities=30% Similarity=0.456 Sum_probs=167.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.|+++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 5899999999963 4799999999999999999999999999999999999874 899999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCCC----ChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSPM----DSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.++..|++||+.++... ..+.. ++.++..++.+++. ...++++.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 27999999988889999999875321 11111 22233333322211 234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.++..+.+.+.+. .+++|+|++||+++.+. .+|++++|++|++++.|++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTRE 231 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999999988766554 34799999999999765 589999999999999999988
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 232 ~~~~ 235 (250)
T PRK14262 232 IVER 235 (250)
T ss_pred HHhC
Confidence 8643
No 273
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=336.15 Aligned_cols=205 Identities=25% Similarity=0.427 Sum_probs=167.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|
T Consensus 37 ~~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 37 ETVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 457999999999963 469999999999999999999999999999999999987 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCC---CC---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSP---MD---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|++.++..|++||+.++.. .. .++.++.++..++.+.+. ...++++.+||||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LSgGe~ 186 (285)
T PRK14254 114 DPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVK-------DQLDSSGLDLSGGQQ 186 (285)
T ss_pred chHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhH-------HHHhCCcccCCHHHH
Confidence 2689999998887899999986422 11 122333444444322211 123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEE-EEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVL-LMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~ii-vl~~G~i~~~g~~~ 836 (1335)
||++||||++++|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++++.. +|+++ +|++|+|++.|+++
T Consensus 187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~-~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~ 265 (285)
T PRK14254 187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTD 265 (285)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHH
Confidence 99999999999999999999999999999999887655443 45899999999999865 89975 57999999999998
Q ss_pred HHHh
Q 000713 837 QLLA 840 (1335)
Q Consensus 837 ~l~~ 840 (1335)
++..
T Consensus 266 ~~~~ 269 (285)
T PRK14254 266 KIFE 269 (285)
T ss_pred HHHh
Confidence 8764
No 274
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=330.16 Aligned_cols=206 Identities=21% Similarity=0.344 Sum_probs=168.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g-------- 691 (1335)
++.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|
T Consensus 2 ~~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~ 78 (252)
T PRK14256 2 NNKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV 78 (252)
T ss_pred CcEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence 356999999999963 469999999999999999999999999999999999986 3 689999877
Q ss_pred -------eEEEEecCCcCCC-CCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 -------KTAYVSQTAWIQT-GSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.++|++|++.++. .|++||+.++.. .+. ++..+.++.+++...+. ...+..+.+|||
T Consensus 79 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~ 151 (252)
T PRK14256 79 DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSG 151 (252)
T ss_pred ChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCH
Confidence 2789999998776 699999986421 121 12233444444432221 123456779999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++. .||++++|++|++.+.|+
T Consensus 152 G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 152 GQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL-KEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH-HhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999988765544 34689999999999985 589999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+++...
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14256 231 TKKIFTT 237 (252)
T ss_pred HHHHHhC
Confidence 9988643
No 275
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-35 Score=332.18 Aligned_cols=203 Identities=24% Similarity=0.381 Sum_probs=165.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC-----------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG----------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g----------- 691 (1335)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 479999999999999999999999999999999999986 4799999876
Q ss_pred ----eEEEEecCCcCCCCCHHHHhccCCCC-----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 ----KTAYVSQTAWIQTGSIRENILFGSPM-----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ----~~ayv~Q~~~i~~~Tv~eNIlfg~~~-----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++... +... ..++++..++.+++ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 26899999988888999999875211 1111 12233333332211 1234567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQE 234 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999887755544 458999999999999864 89999999999999999988
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 235 ~~~~ 238 (251)
T PRK14244 235 IFKN 238 (251)
T ss_pred HhcC
Confidence 8653
No 276
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6e-35 Score=321.58 Aligned_cols=191 Identities=28% Similarity=0.432 Sum_probs=159.5
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|+
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 368999999952 468999999999999999999999999999999999999999999873 7899
Q ss_pred ecCCcCCC-CCHHHHhccCC-C-C-----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGS-P-M-----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~-~-~-----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++. + . ++.+.+++++..++.+.. ...+.+||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYL-----------DRLPEQLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHh-----------hCCcccCCHHHHHHHHHHHHHh
Confidence 99998775 69999997642 1 1 112334455555553322 3455689999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
.+|+++||||||++||+.+++.+.+.+.+... .+.|+|++||+++++. .+|++++|++|++.+.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999887665544 3899999999999876 489999999999998774
No 277
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=6.4e-35 Score=326.64 Aligned_cols=199 Identities=32% Similarity=0.411 Sum_probs=166.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 468999999964 4699999999999999999999999999999999999999999999876 37999
Q ss_pred ecCCcCCC-CCHHHHhccCCCC---Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSPM---DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~~---~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
||++.++. .|++||+.++... +. ++.++.++..++.+ ..+....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-----------LGDRYPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 5999999876432 11 11223333333322 223456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++|+++|||||+++||+++.+.+.+.+.+...+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 999999999999999999999998866654444 8999999999998765 89999999999999999998864
No 278
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-35 Score=331.74 Aligned_cols=205 Identities=26% Similarity=0.370 Sum_probs=170.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g-------- 691 (1335)
...|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 356999999999963 4699999999999999999999999999999999999875 799998864
Q ss_pred ---------eEEEEecCCcCCCCCHHHHhccCCCC---C-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 ---------KTAYVSQTAWIQTGSIRENILFGSPM---D-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 ---------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
.++|++|++.++..|++||+.++... . +++..+.++.+++.+++. +..++.+.+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 26899999998888999999875321 1 123344444554433222 23456778999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
||||||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|+|||+++++. .||++++|++|++++.|
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l-~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g 242 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFG 242 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999988766544 34689999999999986 58999999999999999
Q ss_pred ChHHHHh
Q 000713 834 PYHQLLA 840 (1335)
Q Consensus 834 ~~~~l~~ 840 (1335)
+.+++..
T Consensus 243 ~~~~~~~ 249 (265)
T PRK14252 243 ATDTIFI 249 (265)
T ss_pred CHHHHHh
Confidence 9988864
No 279
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-35 Score=334.04 Aligned_cols=205 Identities=25% Similarity=0.370 Sum_probs=169.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 20 ~~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 96 (276)
T PRK14271 20 PAMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDV 96 (276)
T ss_pred cEEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchh
Confidence 46899999999963 4799999999999999999999999999999999999985 699999876
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC----CChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP----MDSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++.+++.|++||+.++.. ...+.+ .+.++.+++...+ .+.+++.+.+||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 97 LEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV-------KDRLSDSPFRLSGGQQ 169 (276)
T ss_pred HHHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhCCcccCCHHHH
Confidence 2689999998888999999987532 122222 2223333332111 1234567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+++.+.+.. +++|+|++||+++.+.. +|++++|++|++++.|+.++
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999987655443 46899999999998764 89999999999999999999
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 8654
No 280
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-36 Score=310.63 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=174.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.+..+|+.++|.. +++++|+||+|++||+|++.||||+||||.+.++.|+++|++|+|.++|.
T Consensus 4 ~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 5788999999964 57999999999999999999999999999999999999999999999983
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+||.||+|.+|. .||+|||..-.++.. +..++-.+...|.+++.... .-..++.+||||||+|+.|||||.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~h-----lr~~~a~sLSGGERRR~EIARaLa 155 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-----LRDSKAYSLSGGERRRVEIARALA 155 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHH-----HhcCcccccccchHHHHHHHHHHh
Confidence 699999999985 599999985444322 21222222334555554322 224678899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+.+||||||+|+||.....|-+.+.....+|--|+++-|++.+ +..|||.+++.+|+|..+|+++|+.++.
T Consensus 156 ~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 156 ANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred cCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999998866555556679999999999965 7789999999999999999999998653
No 281
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-35 Score=332.70 Aligned_cols=201 Identities=28% Similarity=0.464 Sum_probs=165.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC----------eEEE
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG----------KTAY 695 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g----------~~ay 695 (1335)
..++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|
T Consensus 5 ~~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~ 82 (272)
T PRK15056 5 AGIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82 (272)
T ss_pred ceEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEE
Confidence 46999999999963 24699999999999999999999999999999999999999999999987 3899
Q ss_pred EecCCcC---CCCCHHHHhccCCC-------CC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 696 VSQTAWI---QTGSIRENILFGSP-------MD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 696 v~Q~~~i---~~~Tv~eNIlfg~~-------~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++.+ ...++++|+.++.. .. .++.++.++..++.+. ...+..+||||||||+
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~~qrv 151 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-----------RHRQIGELSGGQKKRV 151 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHH
Confidence 9999854 34589999876421 00 1123334444444322 2345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+. .||+++++ +|++++.|+++++..
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999998776655556899999999998875 57999777 899999999998753
No 282
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-34 Score=328.10 Aligned_cols=203 Identities=26% Similarity=0.378 Sum_probs=167.9
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC----CCcEEEEcC-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH----TQGTIQVYG----------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~----~~G~i~v~g----------- 691 (1335)
.++++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 4699999999999999999999999999999999999999 999999976
Q ss_pred eEEEEecCCc-CC--CCCHHHHhcc-----CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 KTAYVSQTAW-IQ--TGSIRENILF-----GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ~~ayv~Q~~~-i~--~~Tv~eNIlf-----g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
.++|++|++. .+ ..|+.+|+.+ +....+++..+.++.+++.+. .+.+++.+.+||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 3799999974 33 3588888754 222222344455555444210 123466778999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++.+. .+|++++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999998876665444 4899999999999986 5899999999999999999998754
No 283
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-35 Score=337.61 Aligned_cols=206 Identities=24% Similarity=0.418 Sum_probs=169.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|
T Consensus 43 ~~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~ 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV 119 (305)
T ss_pred CceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 346999999999964 479999999999999999999999999999999999986 6899999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCCC--------------------hHHHHHHHHHhccHHHHhhCCCCCCc
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPMD--------------------SHQYQETLERCSLIKDLELLPYGDNT 744 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~~--------------------~~~~~~~~~~~~l~~dl~~l~~gd~t 744 (1335)
+++|++|++.+++.|++||+.++.... .++..+.++.+++..++ .+
T Consensus 120 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~ 192 (305)
T PRK14264 120 NLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV-------ND 192 (305)
T ss_pred cHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh-------hH
Confidence 278999999888889999999763210 11223333434332222 23
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeE-E
Q 000713 745 EIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSV-L 822 (1335)
Q Consensus 745 ~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~i-i 822 (1335)
..++++.+||||||||++|||||+++|+++||||||++||+.++..+.+.+.+.. +++|+|++||+++++.. ||++ +
T Consensus 193 ~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~-~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 193 RLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA-EEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred HhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhcCEEEE
Confidence 3467788999999999999999999999999999999999999998887665543 45899999999999865 8997 5
Q ss_pred EEeCCeEEEecChHHHHhc
Q 000713 823 LMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 823 vl~~G~i~~~g~~~~l~~~ 841 (1335)
+|++|++++.|+++++.+.
T Consensus 272 ~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 272 FLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EecCCEEEEeCCHHHHHhC
Confidence 6799999999999988643
No 284
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-35 Score=326.20 Aligned_cols=199 Identities=32% Similarity=0.465 Sum_probs=167.3
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv 696 (1335)
|+++|+++.|++ ++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| .++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 468999999963 379999999999999999999999999999999999999999999987 37999
Q ss_pred ecCCcCC-CCCHHHHhccCCCCC---h----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQ-TGSIRENILFGSPMD---S----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~-~~Tv~eNIlfg~~~~---~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++ ..|++||+.++.... . ++..+.++.+++.+. +.+++.+||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL-----------LNRKPETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------HhcCcccCCHHHHHHHHHHHHHH
Confidence 9998776 579999998753211 1 122334444444333 23456789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|++++|||||++||+.+++++.+.+.+... +++|+|++||++++++. +|++++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999886665444 38999999999999875 899999999999999999887654
No 285
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-35 Score=329.31 Aligned_cols=212 Identities=19% Similarity=0.262 Sum_probs=173.1
Q ss_pred ccEEEEeeEEEecCC-----------------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE
Q 000713 626 RAISIKSASFSWEES-----------------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ 688 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~-----------------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~ 688 (1335)
..|+++|++++|... ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 458888988888652 123589999999999999999999999999999999999999999999
Q ss_pred EcCeEEEEecCCcCC-CCCHHHHhccCC---CCChHHHH----HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 689 VYGKTAYVSQTAWIQ-TGSIRENILFGS---PMDSHQYQ----ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 689 v~g~~ayv~Q~~~i~-~~Tv~eNIlfg~---~~~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|.+++++|++.+. ..|++||+.++. ..+.+... ++++..++. ..+...+.+||||||||
T Consensus 83 ~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~Gq~qr 151 (264)
T PRK13546 83 RNGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELG-----------EFIYQPVKKYSSGMRAK 151 (264)
T ss_pred ECCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-----------hhhcCCcccCCHHHHHH
Confidence 999999999998765 569999997642 12222222 122222222 22345677999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
++||||++++|+++||||||++||+...+.+.+.+......|+|+|++||+++.+.. +|+|++|++|++.+.|+++++.
T Consensus 152 v~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (264)
T PRK13546 152 LGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231 (264)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999988766555568999999999999875 7999999999999999999988
Q ss_pred hcchHHHHH
Q 000713 840 ASSKEFQEL 848 (1335)
Q Consensus 840 ~~~~~~~~l 848 (1335)
....++.+.
T Consensus 232 ~~~~~~~~~ 240 (264)
T PRK13546 232 PKYEAFLND 240 (264)
T ss_pred HHhHHHHHH
Confidence 765444433
No 286
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-35 Score=326.09 Aligned_cols=200 Identities=27% Similarity=0.384 Sum_probs=167.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------EEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------TAYV 696 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------~ayv 696 (1335)
|+++|++++|++ +++++|+||++++|++++|+|+||||||||+++|+|+++|.+|+|.++|. ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 468999999964 46999999999999999999999999999999999999999999999873 7999
Q ss_pred ecCCcCCC-CCHHHHhccCCC---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 697 SQTAWIQT-GSIRENILFGSP---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 697 ~Q~~~i~~-~Tv~eNIlfg~~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
+|++.++. .|++||+.++.. .+. ++.+++++..++.+ .+.....+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEG-----------YANRKPSQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHHHHHHh
Confidence 99998775 599999986532 111 12333444444432 233556799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+|+++||||||++||+.+++.+.+.+.....+ |+|+|++||++++++. ||++++|++|++.+.|+.+++...
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999998766654443 8999999999999865 899999999999999998887643
No 287
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=330.60 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=166.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC--------CcEEEEcCe-------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--------QGTIQVYGK------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~--------~G~i~v~g~------- 692 (1335)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 47999999999999999999999999999999999999998 999999873
Q ss_pred ------EEEEecCCc-CCCCCHHHHhccCCC-C-------Ch---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 ------TAYVSQTAW-IQTGSIRENILFGSP-M-------DS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 ------~ayv~Q~~~-i~~~Tv~eNIlfg~~-~-------~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
++|++|++. ++..|++||+.++.. . .. ++.+++++..++. +..++.+.+||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCcccCC
Confidence 589999975 567899999987531 1 01 1122333333332 23456778999
Q ss_pred HHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEE
Q 000713 755 GGQKQRIQLARALY---------QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLL 823 (1335)
Q Consensus 755 GGQkqRv~LARAl~---------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iiv 823 (1335)
|||||||+||||++ .+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+. .||++++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 599999999999999999999998876655444 899999999999986 5899999
Q ss_pred EeCCeEEEecChHHHHh
Q 000713 824 MSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 824 l~~G~i~~~g~~~~l~~ 840 (1335)
|++|++++.|+.+++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999988864
No 288
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=331.11 Aligned_cols=207 Identities=23% Similarity=0.361 Sum_probs=169.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC-------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG------- 691 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g------- 691 (1335)
.+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 17 ~~~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 17 DHSVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 3457999999999963 4699999999999999999999999999999999999863 689998876
Q ss_pred --------eEEEEecCCcCCCCCHHHHhccCCCC---C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 --------KTAYVSQTAWIQTGSIRENILFGSPM---D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~~~Tv~eNIlfg~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|+.||+.++... . ++...+.++.+++...+. ...++.+.+|||||
T Consensus 94 ~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 166 (274)
T PRK14265 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQ 166 (274)
T ss_pred chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHH
Confidence 36899999988878999999875321 1 111223344444432221 12346778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe---------CC
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS---------DG 827 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~---------~G 827 (1335)
||||+||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++.+. .||++++|+ +|
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL-KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 99999999999999999999999999999999998766554 34789999999999986 489999997 89
Q ss_pred eEEEecChHHHHhc
Q 000713 828 EILRAAPYHQLLAS 841 (1335)
Q Consensus 828 ~i~~~g~~~~l~~~ 841 (1335)
++++.|+.+++...
T Consensus 246 ~~~~~g~~~~~~~~ 259 (274)
T PRK14265 246 KLVEFSPTEQMFGS 259 (274)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999999998643
No 289
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-35 Score=334.49 Aligned_cols=206 Identities=28% Similarity=0.414 Sum_probs=167.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC--------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG-------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g-------- 691 (1335)
+..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 37 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 37 KPHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred ceEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 456999999999963 469999999999999999999999999999999999864 4999999876
Q ss_pred -------eEEEEecCCcCCCCCHHHHhccCCCC----ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAWIQTGSIRENILFGSPM----DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++.++..|++||+.++... +... ..+.++..++...+ .....+++.+||||
T Consensus 114 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG 186 (286)
T PRK14275 114 DEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGG 186 (286)
T ss_pred chHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHH
Confidence 37899999988878999999876321 1111 12223333322111 11234677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~-~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~ 265 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPT 265 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999988765543 346899999999999864 899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.++
T Consensus 266 ~~~~~~ 271 (286)
T PRK14275 266 AQLFTN 271 (286)
T ss_pred HHHHhC
Confidence 988653
No 290
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=327.75 Aligned_cols=205 Identities=24% Similarity=0.383 Sum_probs=166.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--C---CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--H---TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~---~~G~i~v~g~-------- 692 (1335)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+.+ | ++|+|.++|+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 80 (252)
T PRK14255 4 KIITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80 (252)
T ss_pred ceEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccccc
Confidence 46899999999963 469999999999999999999999999999999999865 4 5899998762
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
++|++|++.+++.|++||+.++... ..+ +..+.++..++...+ ....+..+.+|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq 153 (252)
T PRK14255 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQ 153 (252)
T ss_pred HHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHH
Confidence 7899999988888999999865211 111 112223333322111 122456778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++.+|+++||||||++||+++++.+.+.+.+. .+++|+|++||+++++.. +|+|++|++|++++.|+.+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14255 154 QQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL-RDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTK 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-HhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999998766554 346899999999999864 8999999999999999998
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++..+
T Consensus 233 ~~~~~ 237 (252)
T PRK14255 233 QMFLN 237 (252)
T ss_pred HHhcC
Confidence 87654
No 291
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=328.95 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=168.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g--------- 691 (1335)
..++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46999999999963 4699999999999999999999999999999999999885 489999876
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. +++ ++..++++.+++.+++. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 2789999998888999999987521 121 12234444445433222 12345778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe-----CCeEEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS-----DGEILR 831 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~-----~G~i~~ 831 (1335)
|||++||||++.+|+++||||||++||+.+.+.+.+.+... .+++|+|++||+++++.. ||++++|+ +|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 234 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL-RSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE 234 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE
Confidence 99999999999999999999999999999999988766554 346999999999999865 79999998 599999
Q ss_pred ecChHHHHh
Q 000713 832 AAPYHQLLA 840 (1335)
Q Consensus 832 ~g~~~~l~~ 840 (1335)
.|+++++.+
T Consensus 235 ~~~~~~~~~ 243 (259)
T PRK14260 235 FGVTTQIFS 243 (259)
T ss_pred eCCHHHHhc
Confidence 999999864
No 292
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=327.98 Aligned_cols=205 Identities=24% Similarity=0.356 Sum_probs=172.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g~-------- 692 (1335)
..+.+++.++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.
T Consensus 7 ~~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~ 83 (261)
T PRK14263 7 IVMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83 (261)
T ss_pred ceEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccc
Confidence 46889999999953 4799999999999999999999999999999999999986 7999998872
Q ss_pred -------EEEEecCCcCCCCCHHHHhccCCCC---C---hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 -------TAYVSQTAWIQTGSIRENILFGSPM---D---SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 -------~ayv~Q~~~i~~~Tv~eNIlfg~~~---~---~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|++|++.+++.|++||+.++... + .++.++.++..++.+++.. ..++++.+|||||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~q 156 (261)
T PRK14263 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQ 156 (261)
T ss_pred hHhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHH
Confidence 6999999998889999999876432 1 1234455555555433321 234677899999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe--------CCeEE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS--------DGEIL 830 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~--------~G~i~ 830 (1335)
|++||||++++|+++||||||++||+.++..+++.+.+. .+++|+|++||+++.+. .||+|++|+ +|+++
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~ 235 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL-KKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLV 235 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEE
Confidence 999999999999999999999999999999998876654 45789999999999876 589999996 89999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+.+++.+.
T Consensus 236 ~~g~~~~~~~~ 246 (261)
T PRK14263 236 EMGPTAQIFQN 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998653
No 293
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=327.53 Aligned_cols=204 Identities=23% Similarity=0.374 Sum_probs=169.5
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-----CCCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-----HTQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-----~~~G~i~v~g---------- 691 (1335)
.++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 4789999999963 469999999999999999999999999999999999864 4899999877
Q ss_pred -----eEEEEecCCcCCCCCHHHHhccCCC----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -----KTAYVSQTAWIQTGSIRENILFGSP----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~~Tv~eNIlfg~~----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|+||++.+++.|++||+.++.. .+. ++..+.++.+++.+++.. ..++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 2799999999888899999986521 122 223444555555443321 13456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++++|+++||||||++||+.+.+.+.+.+.+. .+++|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~ 231 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL-KEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQ 231 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHH
Confidence 9999999999999999999999999999999988766544 458999999999998875 69999999999999999998
Q ss_pred HHhc
Q 000713 838 LLAS 841 (1335)
Q Consensus 838 l~~~ 841 (1335)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14266 232 IFIN 235 (250)
T ss_pred HHhC
Confidence 8543
No 294
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.4e-34 Score=329.67 Aligned_cols=207 Identities=27% Similarity=0.410 Sum_probs=168.0
Q ss_pred cEEEEeeEEEecCC------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------
Q 000713 627 AISIKSASFSWEES------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------- 692 (1335)
.|+++|+++.|++. .++++++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 58999999999631 1357999999999999999999999999999999999999999999998873
Q ss_pred --------EEEEecCCc--C-CCCCHHHHhccCC----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 693 --------TAYVSQTAW--I-QTGSIRENILFGS----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 693 --------~ayv~Q~~~--i-~~~Tv~eNIlfg~----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
++|++|++. + .+.|++||+.+.. ..+.. +.++.++.+++.. ...+.++.+|
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~L 152 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD----------SVLDKRPPQL 152 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCCh----------hHhhCCCccC
Confidence 789999973 3 3579999986531 11111 2233333333321 1234567899
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||++++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999988876655444 38999999999999874 89999999999999
Q ss_pred ecChHHHHhcch
Q 000713 832 AAPYHQLLASSK 843 (1335)
Q Consensus 832 ~g~~~~l~~~~~ 843 (1335)
.|+.+++.....
T Consensus 233 ~g~~~~~~~~~~ 244 (268)
T PRK10419 233 TQPVGDKLTFSS 244 (268)
T ss_pred eCChhhccCCCC
Confidence 999999875443
No 295
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.4e-34 Score=320.38 Aligned_cols=191 Identities=32% Similarity=0.477 Sum_probs=159.2
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
++++|+++.|++.. .+.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996422 256999999999999999999999999999999999999999999998763
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCC----CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSP----MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~----~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|++|++.++. .|+.||+.++.. .+.+ +..+.++.+++.+.+ ...+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHL-----------DYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhh-----------hcChhhCCHHHHHHH
Confidence 799999997765 799999986532 1111 234444444443332 345678999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
+||||++.+|+++|||||+++||+.+++.+.+.+.+... +++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999887655444 48999999999997777899999999986
No 296
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.9e-35 Score=323.59 Aligned_cols=201 Identities=32% Similarity=0.478 Sum_probs=159.4
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe----------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------- 692 (1335)
.+.++|+++.|++.+ .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 357899999997542 3679999999999999999999999999999999999999 99999999873
Q ss_pred EEEEecCCcCCCC-CHHHHhccCCCCC-----hHHHH-HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQTG-SIRENILFGSPMD-----SHQYQ-ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~-Tv~eNIlfg~~~~-----~~~~~-~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
++|++|++.+++. |++||+.++.... ..... +..+.. + ++.+ +......+...+||||||||++|||
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~-~---l~~~--~l~~~~~~~~~~LS~G~~qrl~lar 156 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV-L---LRDL--ALTRIGGNLVKGISGGERRRVSIAV 156 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH-H---HHhh--cchhhhcccccCcCHHHHHHHHHHH
Confidence 7999999987765 9999998752211 11110 011100 1 1111 1112234567799999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-cc-ccCCeEEEEeCCeEEEec
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-FL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~l-~~~D~iivl~~G~i~~~g 833 (1335)
|++.+|+++||||||++||+.+++++.+.+.+...+++|+|++||+++ .+ ..+|++++|++|++++.|
T Consensus 157 al~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 157 QLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999998866655556899999999983 55 568999999999998765
No 297
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.4e-34 Score=341.56 Aligned_cols=195 Identities=27% Similarity=0.403 Sum_probs=162.9
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------------EE
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------------TA 694 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------------~a 694 (1335)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78899953 2 35 999999999999999999999999999999999999999998762 68
Q ss_pred EEecCCcCCC-CCHHHHhccCCCC-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPM-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
|++|++.++. .|++||+.|+... .. ++.++.++..++.+ ..+.++.+||||||||++||||++
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGH-----------LLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999998775 6999999986432 11 12333444443322 334567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++.+.. +|+|++|++|++++.|+++++....
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 999999999999999999999998877665544 8999999999998764 8999999999999999999987543
No 298
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=326.84 Aligned_cols=204 Identities=26% Similarity=0.402 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g---------- 691 (1335)
.++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 5889999999963 47999999999999999999999999999999999999864 89999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC----ChHHHH----HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM----DSHQYQ----ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~~~~----~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.++. .|+.||+.++... .++... +.++..++.+.+. ......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVK-------DRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhh-------hhhcCCcccCCHHH
Confidence 3789999988776 5999999864321 111111 1222222221111 12245677999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
|||++||||++++|+++||||||++||+.+++.+.+.+.+. .+++|+|++||+++++.. ||+|++|++|++++.|+++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~-~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL-KKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTD 232 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999988765544 457999999999999875 8999999999999999999
Q ss_pred HHHhc
Q 000713 837 QLLAS 841 (1335)
Q Consensus 837 ~l~~~ 841 (1335)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14272 233 QLFTN 237 (252)
T ss_pred HHHhC
Confidence 88653
No 299
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=308.37 Aligned_cols=159 Identities=33% Similarity=0.551 Sum_probs=144.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+ ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 468999999963 46999999999999999999999999999999999999999999998873 689
Q ss_pred EecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 696 VSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 696 v~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
++|++.++. .|++||+. ||||||||++||||++.+|+++
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 999988765 49999984 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeE
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEI 829 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i 829 (1335)
||||||++||+.+++.+.+.+.+...+|.|+|++||+.+++. .+|++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999877666556899999999999887 5899999999974
No 300
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=327.71 Aligned_cols=206 Identities=22% Similarity=0.377 Sum_probs=169.1
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC-----CcEEEEcC---------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT-----QGTIQVYG--------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~-----~G~i~v~g--------- 691 (1335)
..|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 36899999999999999999999999999999999999985 79888765
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC---C-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP---M-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~---~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.+++.|++||+.++.. . .. ++..++++..++.+.+. ...++.+.+|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 2789999988877999999986421 1 11 12233344444322221 12356778999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeC-----CeEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSD-----GEIL 830 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~-----G~i~ 830 (1335)
|||++||||++.+|+++||||||++||+.+.+.+.+.+..... .++|+|++||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 9999999999999999999999999999999999887665433 48999999999999865 799999999 9999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999998654
No 301
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-34 Score=319.03 Aligned_cols=185 Identities=30% Similarity=0.398 Sum_probs=154.3
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------eEE
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------KTA 694 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~~a 694 (1335)
|++++|++ +.+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 233 99999999 99999999999999999999999999999999876 378
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC-C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM-D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~-~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
|++|++.++ +.|++||+.++... . +++..+.++..++.. ..++++.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~ 147 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-----------LLNRYPAQLSGGEKQRVALARALA 147 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHh-----------HhhcCcccCCHHHHHHHHHHHHHh
Confidence 999999887 46999999875422 1 122334444444432 234567899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++. .+|++++|++|++++.|
T Consensus 148 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 148 AQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998876655444 899999999999886 58999999999998765
No 302
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-34 Score=325.44 Aligned_cols=205 Identities=25% Similarity=0.349 Sum_probs=165.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
.|+++|++++|++ ..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 5899999999963 4689999999999999999999999999999999999999999999875
Q ss_pred -------eEEEEecCCc--C-CCCCHHHHhccC-----CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 -------KTAYVSQTAW--I-QTGSIRENILFG-----SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 -------~~ayv~Q~~~--i-~~~Tv~eNIlfg-----~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
.++|++|++. + +..|+.+|+.+. .....+..++ ..+.++.++.. .+..+..+.+||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~l~~l~l~-~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA------AHDWLEEVEID-PTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHH------HHHHHHHcCCC-hhhhhcCchhcCHH
Confidence 2699999974 2 345889998532 1111111111 11223333221 13456678899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+++.+.+.+.+... .|.|+|+|||+++++. .+|++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999887665444 4899999999999987 489999999999999999
Q ss_pred hHHHHhc
Q 000713 835 YHQLLAS 841 (1335)
Q Consensus 835 ~~~l~~~ 841 (1335)
.+++..+
T Consensus 233 ~~~~~~~ 239 (253)
T TIGR02323 233 TDQVLDD 239 (253)
T ss_pred HHHHhcC
Confidence 9888643
No 303
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=327.26 Aligned_cols=204 Identities=23% Similarity=0.372 Sum_probs=166.0
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-----CCcEEEEcC----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-----TQGTIQVYG---------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-----~~G~i~v~g---------- 691 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 5899999999964 4699999999999999999999999999999999999974 799999876
Q ss_pred -----eEEEEecCCcCCC-CCHHHHhccCCCC----ChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 692 -----KTAYVSQTAWIQT-GSIRENILFGSPM----DSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 692 -----~~ayv~Q~~~i~~-~Tv~eNIlfg~~~----~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
.++|++|++.++. .|++||+.++... ... +.+++++..++...+ .......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 2789999987765 6999999864321 111 122333333332111 122346678999999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEe------CCeEE
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMS------DGEIL 830 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~------~G~i~ 830 (1335)
|||++||||++.+|+++||||||++||+.+...+.+.+.+. .+++|+|++||+++++. .||+|++|+ +|+|+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~ 232 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL-KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLV 232 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEE
Confidence 99999999999999999999999999999999988766544 45789999999999875 589999997 89999
Q ss_pred EecChHHHHhc
Q 000713 831 RAAPYHQLLAS 841 (1335)
Q Consensus 831 ~~g~~~~l~~~ 841 (1335)
+.|+++++...
T Consensus 233 ~~~~~~~~~~~ 243 (258)
T PRK14241 233 EIDDTEKIFSN 243 (258)
T ss_pred ecCCHHHHHhC
Confidence 99999988653
No 304
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=2e-34 Score=312.76 Aligned_cols=174 Identities=29% Similarity=0.523 Sum_probs=151.5
Q ss_pred cEEEEeeEEEecCC---CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcCe---------
Q 000713 627 AISIKSASFSWEES---SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYGK--------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~---~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g~--------- 692 (1335)
.|+++|++++|++. ..+++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 48899999999742 1257999999999999999999999999999999999999 999999999873
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++|++|++.++. .|++||+.++... . +||||||||++||||++.+
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------~---------------~LS~G~~qrv~laral~~~ 129 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKL------------------R---------------GLSGGERKRVSIALELVSN 129 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHh------------------c---------------cCCHHHHHHHHHHHHHHcC
Confidence 799999987764 6999999753110 0 7999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-ccc-cCCeEEEEeCCeEEEec
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-FLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~l~-~~D~iivl~~G~i~~~g 833 (1335)
|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++ .+. .+|++++|++|++.+.|
T Consensus 130 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 130 PSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999998776655556899999999997 454 58999999999998654
No 305
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-34 Score=341.13 Aligned_cols=211 Identities=23% Similarity=0.293 Sum_probs=172.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC-C
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-Q 703 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i-~ 703 (1335)
...++++|+++.|++...+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|...++.+.+.+ .
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~ 98 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNG 98 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCC
Confidence 457999999999976444579999999999999999999999999999999999999999999999987666666544 3
Q ss_pred CCCHHHHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 000713 704 TGSIRENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLL 776 (1335)
..|++||+.++.. .+.+. ..++++.+++.+. +..++.+||||||||++||||++.+|+++||
T Consensus 99 ~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~-----------ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL 167 (549)
T PRK13545 99 QLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKF-----------IYQPVKTYSSGMKSRLGFAISVHINPDILVI 167 (549)
T ss_pred CCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhH-----------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 5699999976431 22222 2233444444322 2345678999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcchHHH
Q 000713 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASSKEFQ 846 (1335)
Q Consensus 777 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~~~~~ 846 (1335)
||||++||+.+++.+++.+.....+|+|+|++||+++++.. ||++++|++|++++.|+++++......+.
T Consensus 168 DEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~ 238 (549)
T PRK13545 168 DEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFL 238 (549)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHH
Confidence 99999999999999988766555568999999999998865 89999999999999999999876544433
No 306
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.3e-34 Score=342.58 Aligned_cols=207 Identities=26% Similarity=0.407 Sum_probs=173.0
Q ss_pred cccEEEEeeEEEecCC--------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----
Q 000713 625 NRAISIKSASFSWEES--------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~--------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---- 692 (1335)
+..++++|+++.|... ....+++||||++++||.++|||+||||||||.++|+|+.+|++|+|.++|.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 4568899999999742 2346899999999999999999999999999999999999999999999873
Q ss_pred -----------EEEEecCCcC---CCCCHHHHhccCC----CCC-hH---HHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -----------TAYVSQTAWI---QTGSIRENILFGS----PMD-SH---QYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -----------~ayv~Q~~~i---~~~Tv~eNIlfg~----~~~-~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
+-+++|+|.- +..||+++|.-.. ... .+ +..+.++..+|.++ ..++++
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP 427 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYP 427 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCc
Confidence 4689999853 5679999996432 111 11 23333555555432 356788
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+|||||||||+|||||..+|+++++|||+||||+.++..+.+.+.+...+ |.|.|+||||+.++.+ ||+|+||++|+
T Consensus 428 ~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~ 507 (539)
T COG1123 428 HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507 (539)
T ss_pred hhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCe
Confidence 999999999999999999999999999999999999999999877765443 8999999999999976 89999999999
Q ss_pred EEEecChHHHHhc
Q 000713 829 ILRAAPYHQLLAS 841 (1335)
Q Consensus 829 i~~~g~~~~l~~~ 841 (1335)
|++.|+.+++.+.
T Consensus 508 iVE~G~~~~v~~~ 520 (539)
T COG1123 508 IVEEGPTEKVFEN 520 (539)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998865
No 307
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=9.2e-35 Score=291.83 Aligned_cols=195 Identities=28% Similarity=0.402 Sum_probs=166.9
Q ss_pred ccEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
..|++++++++-+... +..+|++++|.|++||.++||||+||||||||..+.|+..|++|+|.+.|
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 3688888888875432 34689999999999999999999999999999999999999999999977
Q ss_pred ----eEEEEecCCc-CCCCCHHHHhccCCCCCh-------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 692 ----KTAYVSQTAW-IQTGSIRENILFGSPMDS-------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 692 ----~~ayv~Q~~~-i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|+|+|... +++.|..||+....+.+. ...++.+++.+|.+.+ ...+.+||||++|
T Consensus 85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl-----------~HyP~qLSGGEQQ 153 (228)
T COG4181 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRL-----------THYPAQLSGGEQQ 153 (228)
T ss_pred hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCccccc-----------ccCccccCchHHH
Confidence 3799999864 689999999987644332 2244555666654444 4456789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEE
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILR 831 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~ 831 (1335)
||+||||+...|+|++-||||.+||..++++|.+.++.. ...|.|.|+||||......|||++-|++|++++
T Consensus 154 RVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 154 RVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999888754 457999999999999999999999999999975
No 308
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=300.58 Aligned_cols=205 Identities=28% Similarity=0.411 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+|+.+|++++-.+ +.+|++++|++++||.++|+||||+||||||++|.||+.|++|++.++|. -
T Consensus 1 mi~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~r 77 (259)
T COG4559 1 MIRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHR 77 (259)
T ss_pred CeeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHh
Confidence 4788999998753 67999999999999999999999999999999999999999999999984 3
Q ss_pred EEEecCCcC-CCCCHHHHhccCCCCC-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 694 AYVSQTAWI-QTGSIRENILFGSPMD-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 694 ayv~Q~~~i-~~~Tv~eNIlfg~~~~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
|..||+..+ |.-||+|-+.+|.-.. .++-+++.+++-...|+..+.. +.-.+||||+||||.|||.|
T Consensus 78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-------R~y~~LSGGEqQRVqlARvL 150 (259)
T COG4559 78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-------RDYRTLSGGEQQRVQLARVL 150 (259)
T ss_pred hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-------cchhhcCchHHHHHHHHHHH
Confidence 899998765 8889999999985321 1122223333322233333332 33458999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 768 YQ------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 768 ~~------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+ ++++++||||||+||...+.++++...+...+|..|+.|-||++... +||+|++|++|+++..|++++.+.
T Consensus 151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred HHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcC
Confidence 87 45699999999999999999999888888888999999999999975 589999999999999999999875
Q ss_pred c
Q 000713 841 S 841 (1335)
Q Consensus 841 ~ 841 (1335)
.
T Consensus 231 ~ 231 (259)
T COG4559 231 D 231 (259)
T ss_pred H
Confidence 4
No 309
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-34 Score=311.60 Aligned_cols=174 Identities=29% Similarity=0.439 Sum_probs=151.1
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcC---------eEE
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYG---------KTA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g---------~~a 694 (1335)
.|+++|+++.|++.. ++++++|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 588999999996421 246999999999999999999999999999999999986 48999999987 379
Q ss_pred EEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
|++|++.++. .|++||+.++.. .+ +||||||||++||||++.+|++
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~---------~~------------------------~LSgGe~qrv~la~al~~~p~v 129 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL---------LR------------------------GLSVEQRKRLTIGVELAAKPSI 129 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH---------Hh------------------------cCCHHHhHHHHHHHHHhcCCcE
Confidence 9999987665 699999986310 00 7999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-c-ccCCeEEEEeC-CeEEEec
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-L-PAFDSVLLMSD-GEILRAA 833 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l-~~~D~iivl~~-G~i~~~g 833 (1335)
+||||||++||+.+++.+++.+.+...+|+|+|++||+++. + ..+|+|++|++ |++++.|
T Consensus 130 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 130 LFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999988766554568999999999984 4 56899999999 9998765
No 310
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=296.21 Aligned_cols=203 Identities=26% Similarity=0.412 Sum_probs=170.8
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.+++++|+.++|+. ..+|++|||+.++|+.+.|+|.+||||||+|+||.=+..|..|.|.++|.
T Consensus 5 ~~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 5 NALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred cceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 47899999999964 46999999999999999999999999999999999999999999999872
Q ss_pred -------------EEEEecCCcCC-CCCHHHHhccC------CCCC--hHHHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -------------TAYVSQTAWIQ-TGSIRENILFG------SPMD--SHQYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -------------~ayv~Q~~~i~-~~Tv~eNIlfg------~~~~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
.++|+|+..+. .+|+.||+.-. .+-+ .++.+..+.+.++.+.- ...+
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~-----------~~YP 150 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKA-----------DAYP 150 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhh-----------hcCc
Confidence 37999987664 67999999743 2211 12233334444443322 2467
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEEeCCeE
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLMSDGEI 829 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl~~G~i 829 (1335)
..|||||+||++|||||..+|+++|+|||||||||+-.-++.+-+.+...+|+|.++|||.+.|...+ .+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 78999999999999999999999999999999999998888876667778899999999999999875 99999999999
Q ss_pred EEecChHHHHhcc
Q 000713 830 LRAAPYHQLLASS 842 (1335)
Q Consensus 830 ~~~g~~~~l~~~~ 842 (1335)
-++|+|+++..+.
T Consensus 231 EE~G~P~qvf~nP 243 (256)
T COG4598 231 EEEGPPEQVFGNP 243 (256)
T ss_pred cccCChHHHhcCC
Confidence 9999999998653
No 311
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-34 Score=322.51 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=171.0
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-C----CCcEEEEcC----------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-H----TQGTIQVYG---------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-~----~~G~i~v~g---------- 691 (1335)
++++|++.+|.... ...+++||||++++||++||||+|||||||+.++|+|+++ + .+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997543 3568999999999999999999999999999999999998 3 578998887
Q ss_pred -------eEEEEecCCcC---CCCCHHHHhc----cCCCC-Ch-H---HHHHHHHHhccHHHHhhCCCCCCccccCCCCC
Q 000713 692 -------KTAYVSQTAWI---QTGSIRENIL----FGSPM-DS-H---QYQETLERCSLIKDLELLPYGDNTEIGERGVN 752 (1335)
Q Consensus 692 -------~~ayv~Q~~~i---~~~Tv~eNIl----fg~~~-~~-~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~ 752 (1335)
+|+|+||+|-- +-.||.+.+. ..... .+ + +..+.++..++.+ .+..+...+++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 37999999842 3457776664 22211 11 1 2223333333321 12245678899
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
|||||||||.||.|+..+|+++|.||||+|||..++.+|.+.+.+... .|.|+|+||||+..+.. ||+|+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999987765543 69999999999998764 8999999999999
Q ss_pred EecChHHHHhcch--HHHHHHHHhh
Q 000713 831 RAAPYHQLLASSK--EFQELVSAHK 853 (1335)
Q Consensus 831 ~~g~~~~l~~~~~--~~~~l~~~~~ 853 (1335)
|.|+.++++++.. ....++++..
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~s~P 258 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLNSLP 258 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHHhCc
Confidence 9999999987542 3345555443
No 312
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-34 Score=297.02 Aligned_cols=197 Identities=30% Similarity=0.470 Sum_probs=161.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQT 699 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~ 699 (1335)
+.+++++.+|+..+ .++|+|+|++|.+||.++++||+||||||||+.++|+++|..|+|.++|+ -|.|+|+
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 55778899997643 56999999999999999999999999999999999999999999999986 4899999
Q ss_pred CcC-CCCCHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 700 AWI-QTGSIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 700 ~~i-~~~Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
+-+ +..++.||+.||... ++.. ..+.+...+|. + +. .+...+||||||||+.|||||..+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~---------~-~~-~~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE---------G-AE-HKYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc---------c-cc-ccceEeecchHHHHHHHHHHhhcCc
Confidence 755 567999999998643 2221 12222222221 1 11 3567799999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccc-cCCeEEEEe--CCeEEEecChH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLP-AFDSVLLMS--DGEILRAAPYH 836 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~-~~D~iivl~--~G~i~~~g~~~ 836 (1335)
+.++||||++|||+-+++++-+.+++.+ ..||.+++|||++++.- .+++++||+ .|+|++.-+++
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCCC
Confidence 9999999999999999999877777654 46999999999999865 579999997 58999865543
No 313
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-34 Score=312.15 Aligned_cols=180 Identities=27% Similarity=0.367 Sum_probs=151.6
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe----------
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------- 692 (1335)
.+.++|++|.|+.. +++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 47899999999864 34579999999999999999999999999999999999999 89999999873
Q ss_pred --EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 693 --TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 693 --~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
++|++|++.++. .|++||+.++.... ..++...||||||||++||||+++
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---------------------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK---------------------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc---------------------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 689999987665 69999998753110 124567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccC-CCcc-ccCCeEEEEeCCeEEEec
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQ-VDFL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~-~~~l-~~~D~iivl~~G~i~~~g 833 (1335)
+|+++||||||++||+.+++.+.+.+.+...+ +.|+|++||+ .+.+ ..||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999998866654444 5676766554 5665 458999999999998754
No 314
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-33 Score=319.64 Aligned_cols=365 Identities=17% Similarity=0.229 Sum_probs=262.3
Q ss_pred hHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhh
Q 000713 956 LRLIVVYLLIGFV------STLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLD 1029 (1335)
Q Consensus 956 ~~~~~vy~~l~~~------~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~ 1029 (1335)
......|+.+-+. ++++.-+|+++......-+.+.+--++++++....+.|.=...+|.++.-..+-.+.+. .
T Consensus 253 ~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-l 331 (790)
T KOG0056|consen 253 YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-L 331 (790)
T ss_pred HHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-H
Confidence 3445555555444 35666678877778888899999999999999999999999999988877776666655 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHH
Q 000713 1030 IPFSLIFAVGATTNACSNLGVL-AVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTI 1108 (1335)
Q Consensus 1030 lp~~~~~~~~~~~~~~~~l~vi-~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tI 1108 (1335)
+........-.+..+..+++-. ...+||+.+++..+..+|.++.-..-.=--+.+|-...+--.-++.-.+++-+-.|+
T Consensus 332 l~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETV 411 (790)
T KOG0056|consen 332 LEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETV 411 (790)
T ss_pred HHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhh
Confidence 3333333333334443333322 235777776666555555432211000001112222222222334567889999999
Q ss_pred HhcccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHHHHHHHHHHHHHH
Q 000713 1109 RAFEEEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCM-VLLPPGTFTPGFIGMALSYGLSLNSS 1187 (1335)
Q Consensus 1109 RAf~~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~-v~~~~~~~~~g~~Glalsy~l~l~~~ 1187 (1335)
+-|+.|+.=.+++.+.++.+++..+.....-..|...-+.+-++-.....++. .....++.+.|..-+..+|.+++-+.
T Consensus 412 Kyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~P 491 (790)
T KOG0056|consen 412 KYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMP 491 (790)
T ss_pred hccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCc
Confidence 99999999999999999999988766654444333322222222122122222 22235677888888999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEE
Q 000713 1188 LVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKI 1267 (1335)
Q Consensus 1188 l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekV 1267 (1335)
+||.-.-+..++++++-.||+.+..+.++ ++.+....||---.+|.|+|+||+|.|.|+.| ||+||||+++||+.|
T Consensus 492 LN~FGT~YR~iQ~nfiDmEnmfdllkee~---eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~-vl~disF~v~pGktv 567 (790)
T KOG0056|consen 492 LNFFGTYYRSIQKNFIDMENMFDLLKEEP---EVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKP-VLSDISFTVQPGKTV 567 (790)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHhhcCc---hhhcCCCCCCccccCCeEEEEEeEEecCCCCc-eeecceEEecCCcEE
Confidence 99999999999999999999999986433 33333222333336899999999999999875 999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1268 GIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1268 GIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|+||++|+||||++..|||++|.++|+|.|||+||+. |+.||+||||.+||+.||..|
T Consensus 568 AlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN 631 (790)
T KOG0056|consen 568 ALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN 631 (790)
T ss_pred EEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence 9999999999999999999999999999999999975 789999999999999999754
No 315
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.5e-34 Score=308.92 Aligned_cols=160 Identities=35% Similarity=0.560 Sum_probs=144.6
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------e
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------K 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------~ 692 (1335)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 68999999987 79999999999999999999999999999999999999999999987 3
Q ss_pred EEEEecCC----cCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 693 TAYVSQTA----WIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 693 ~ayv~Q~~----~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++|++ ..++.|++||+.++.. ||||||||++||||++
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~ 120 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLA 120 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHc
Confidence 78999985 3456799999976421 9999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 769 QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 769 ~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
.+|+++||||||++||+.+++.+.+.+.+...+++|+|++||+++.+.. ||++++|++|++
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999988666554568999999999998865 899999999974
No 316
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-34 Score=321.36 Aligned_cols=206 Identities=24% Similarity=0.363 Sum_probs=167.1
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-------------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------- 691 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------- 691 (1335)
.+.++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|
T Consensus 8 ~~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 8 EDVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 457999999999964 5799999999999999999999999999999999999999997776654
Q ss_pred ------eEEEEecCCcCCC-CCHHHHhccCCC---C-ChHHH----HHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 ------KTAYVSQTAWIQT-GSIRENILFGSP---M-DSHQY----QETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~-~~~~~----~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++. .|++||+.++.. . .++.. .+.++..++.+.+ ....++.+..||||
T Consensus 85 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G 157 (257)
T PRK14246 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGG 157 (257)
T ss_pred HHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHH
Confidence 2699999998775 599999987532 1 12122 2222222322111 11245677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~ 835 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+. .++.|+|++||+++++. .||++++|++|++.+.|+.
T Consensus 158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~-~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~ 236 (257)
T PRK14246 158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL-KNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSS 236 (257)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH-hcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999888765543 45799999999999985 5899999999999999999
Q ss_pred HHHHhc
Q 000713 836 HQLLAS 841 (1335)
Q Consensus 836 ~~l~~~ 841 (1335)
+++.+.
T Consensus 237 ~~~~~~ 242 (257)
T PRK14246 237 NEIFTS 242 (257)
T ss_pred HHHHhC
Confidence 988654
No 317
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=2.7e-34 Score=314.68 Aligned_cols=181 Identities=29% Similarity=0.439 Sum_probs=150.1
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------------e
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------------K 692 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------------~ 692 (1335)
++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 4699999999999999999999999999999999999999999998876 2
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCC---C----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPM---D----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLA 764 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LA 764 (1335)
++|++|++.++. .|++||+.++... + .++.++.++..++.+. .++...+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 689999998765 7999999874321 1 1223334444444222 2456678999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 765 RALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 765 RAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
||++++|+++||||||++||+.+.+.+.+.+.+...+|+|+|++||+++.+..||++++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999887665545689999999999987779999875
No 318
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-34 Score=306.08 Aligned_cols=160 Identities=38% Similarity=0.531 Sum_probs=145.1
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------e
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------K 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~ 692 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999964 4699999999999999999999999999999999999999999999876 2
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
++|++|++.++ +.|++||+.+. ||||||||++||||++++|
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p 119 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDP 119 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCC
Confidence 68999998776 56999998763 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCe
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGE 828 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~ 828 (1335)
++++|||||++||+.++..+++.+.+...+ ++|+|++||+++++. .+|++++|++|+
T Consensus 120 ~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 120 DVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999998877665555 799999999999987 589999999985
No 319
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=359.45 Aligned_cols=206 Identities=23% Similarity=0.373 Sum_probs=170.1
Q ss_pred ccEEEEeeEEEecCCC--------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----
Q 000713 626 RAISIKSASFSWEESS--------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~--------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----- 692 (1335)
..++++|+++.|+... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 4699999999996311 246899999999999999999999999999999999999999999999872
Q ss_pred -----------EEEEecCCc--C-CCCCHHHHhccCC---CC-Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCC
Q 000713 693 -----------TAYVSQTAW--I-QTGSIRENILFGS---PM-DS----HQYQETLERCSLIKDLELLPYGDNTEIGERG 750 (1335)
Q Consensus 693 -----------~ayv~Q~~~--i-~~~Tv~eNIlfg~---~~-~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g 750 (1335)
++|++|+|. + ...||.||+.++. .. .. ++..+.++.+++..+ ....++
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~----------~~~~~~ 461 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPE----------HAWRYP 461 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHH----------HhhCCc
Confidence 799999983 4 4679999997632 11 11 123344444444211 123567
Q ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 751 VNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 751 ~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+|||||||||+||||++.+|+++||||||++||+.++..+++.+.+...+ |+|+|+||||++.+.. ||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 799999999999999999999999999999999999999999877665443 8999999999999865 89999999999
Q ss_pred EEEecChHHHHhc
Q 000713 829 ILRAAPYHQLLAS 841 (1335)
Q Consensus 829 i~~~g~~~~l~~~ 841 (1335)
|++.|+.+++...
T Consensus 542 iv~~g~~~~i~~~ 554 (623)
T PRK10261 542 IVEIGPRRAVFEN 554 (623)
T ss_pred EEEecCHHHHhcC
Confidence 9999999998754
No 320
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-34 Score=303.59 Aligned_cols=158 Identities=42% Similarity=0.696 Sum_probs=144.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TA 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~a 694 (1335)
++++|++++|++. +.++++|+||++++|++++|+||||||||||+++|+|+.+|++|+|.++|. ++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999653 136899999999999999999999999999999999999999999999872 68
Q ss_pred EEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEE
Q 000713 695 YVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIY 774 (1335)
Q Consensus 695 yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~il 774 (1335)
|++|++.+++.|+.||+ ||||||||++||||++.+|+++
T Consensus 80 ~~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~ll 118 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPIL 118 (171)
T ss_pred EEcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988888999997 9999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 775 LLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 775 LLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
||||||++||+.+..++.+.+.+. .+++|+|++||+++.++.||++++|++|+
T Consensus 119 llDEP~~gLD~~~~~~l~~~l~~~-~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 119 ILDEATSALDPETEALILEALRAL-AKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999888766544 45799999999999988899999999985
No 321
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=309.45 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=170.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------- 692 (1335)
.+++++++++|+. -.+++|+||++++||+++++||||||||||+++|.|.++|++|+|.++|+
T Consensus 4 lL~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~G 80 (250)
T COG0411 4 LLEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80 (250)
T ss_pred eeeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence 4779999999964 57999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcCC-CCCHHHHhccCCCCC--------h----HHHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 TAYVSQTAWIQ-TGSIRENILFGSPMD--------S----HQYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 ~ayv~Q~~~i~-~~Tv~eNIlfg~~~~--------~----~~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++--+|.+-+| +.||.||++.+.... . ...+++.+ +..+.+.+.. ....++...+||+|||
T Consensus 81 i~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-----~~~a~~~A~~LsyG~q 155 (250)
T COG0411 81 IARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-----GELADRPAGNLSYGQQ 155 (250)
T ss_pred ceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-----chhhcchhhcCChhHh
Confidence 57889999876 669999998763211 0 01111111 1122222221 1223466779999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~ 836 (1335)
+|+.|||||+.+|+++|||||.+||.+....++.+.+.+... .|.|+++|.||++.+. .||||+||+.|+++.+|+|+
T Consensus 156 R~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 999999999999999999999999999999999987666554 4699999999999975 58999999999999999999
Q ss_pred HHHhcch
Q 000713 837 QLLASSK 843 (1335)
Q Consensus 837 ~l~~~~~ 843 (1335)
|+.++..
T Consensus 236 eV~~dp~ 242 (250)
T COG0411 236 EVRNNPR 242 (250)
T ss_pred HHhcCHH
Confidence 9987643
No 322
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1e-33 Score=319.85 Aligned_cols=199 Identities=23% Similarity=0.278 Sum_probs=161.7
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe-----------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~----------- 692 (1335)
..++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.
T Consensus 6 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T CHL00131 6 PILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERA 82 (252)
T ss_pred ceEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhh
Confidence 46999999999963 4699999999999999999999999999999999998 5799999998762
Q ss_pred ---EEEEecCCcCCC-CCHHHHhccCCCC----------Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CC
Q 000713 693 ---TAYVSQTAWIQT-GSIRENILFGSPM----------DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NL 753 (1335)
Q Consensus 693 ---~ayv~Q~~~i~~-~Tv~eNIlfg~~~----------~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~L 753 (1335)
++|++|++.++. .|+++|+.++... +. ++..+.++.+++.+ +..++... +|
T Consensus 83 ~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~L 152 (252)
T CHL00131 83 HLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGF 152 (252)
T ss_pred eeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCC
Confidence 578999987765 4899998764210 10 11222333333321 12334454 59
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEE
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILR 831 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~ 831 (1335)
|||||||++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++.. +|++++|++|++++
T Consensus 153 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999987666555568999999999998864 79999999999999
Q ss_pred ecChHH
Q 000713 832 AAPYHQ 837 (1335)
Q Consensus 832 ~g~~~~ 837 (1335)
.|++++
T Consensus 233 ~~~~~~ 238 (252)
T CHL00131 233 TGDAEL 238 (252)
T ss_pred ecChhh
Confidence 998874
No 323
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=5.1e-33 Score=350.91 Aligned_cols=198 Identities=28% Similarity=0.440 Sum_probs=164.1
Q ss_pred CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe----------EEEEecCCcCC-CCC
Q 000713 641 SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------TAYVSQTAWIQ-TGS 706 (1335)
Q Consensus 641 ~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------~ayv~Q~~~i~-~~T 706 (1335)
.++++|+|+|+++++||+++|+|||||||||||++|+|+.++. +|+|.++|. +|||+|+++++ +.|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3568999999999999999999999999999999999999874 799999995 49999999887 569
Q ss_pred HHHHhccCCCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC--CCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 000713 707 IRENILFGSPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGER--GVNLSGGQKQRIQLARALYQDADIYLLDDPF 780 (1335)
Q Consensus 707 v~eNIlfg~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~--g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~ 780 (1335)
|+||+.|+...+. .+.++..+.+.+.++++ +++..+|.+|+. +..||||||||++||||++.+|++++|||||
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-LRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-chhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 9999998654321 11111112222333332 223457899974 4789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC-c-cccCCeEEEEeCCeEEEecChHHHH
Q 000713 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD-F-LPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 781 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~-~-l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
||||++++.++++.+.+...+|+|+|+++|+++ . .+.+|++++|++|++++.|+++++.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 999999999999988776667999999999996 3 5678999999999999999999875
No 324
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.3e-34 Score=317.75 Aligned_cols=182 Identities=31% Similarity=0.438 Sum_probs=151.1
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcCCC-CCHHHHhccCC-
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWIQT-GSIRENILFGS- 715 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i~~-~Tv~eNIlfg~- 715 (1335)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|++|++.++. .|++||+.++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999884 389999987765 69999997642
Q ss_pred ----CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000713 716 ----PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 716 ----~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~ 787 (1335)
..+.. +..+.++.+++.+. ....+.+||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEA-----------ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHH-----------HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 12221 22334444444322 234567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHH
Q 000713 788 ASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 788 ~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l 838 (1335)
++.+.+.+.+... .|+|+|++||+++.+. .||+|++|++|++++.|+..++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 9999887765544 4899999999999876 4899999999999988866554
No 325
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5.7e-34 Score=317.56 Aligned_cols=189 Identities=25% Similarity=0.376 Sum_probs=154.8
Q ss_pred ceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC----CCcEEEEcC-----------eEEEEecCCc--C-CCCC
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH----TQGTIQVYG-----------KTAYVSQTAW--I-QTGS 706 (1335)
Q Consensus 645 ~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~----~~G~i~v~g-----------~~ayv~Q~~~--i-~~~T 706 (1335)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++| .++|++|++. + ...|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 47899999999999999999999999999999999999 899999987 3799999984 3 2469
Q ss_pred HHHHhccCCC----CCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 707 IRENILFGSP----MDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 707 v~eNIlfg~~----~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
++||+.+... ... ++..+.++.+++.+ + .+..++.+.+|||||||||+||||++++|+++|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999865321 111 12333444444321 1 1234567789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 780 FSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|++||+.+.+.+.+.+.+... .|+|+|++||+++.+. .+|++++|++|++.+.|+++++...
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 216 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999887665544 3899999999999986 5899999999999999999998754
No 326
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-33 Score=309.48 Aligned_cols=184 Identities=26% Similarity=0.345 Sum_probs=155.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TA 694 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~a 694 (1335)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~ 77 (204)
T PRK13538 1 MLEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLL 77 (204)
T ss_pred CeEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheE
Confidence 3789999999964 46999999999999999999999999999999999999999999999873 68
Q ss_pred EEecCCcCC-CCCHHHHhccCCCC----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 695 YVSQTAWIQ-TGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 695 yv~Q~~~i~-~~Tv~eNIlfg~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
|++|++.++ +.|++||+.++.+. +.++.+++++..++.+.. ..++.+||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-----------DVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHHHHHHhc
Confidence 999998765 46999999875432 233455666666664332 23567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC-CeEEEE
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF-DSVLLM 824 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~-D~iivl 824 (1335)
+|++++|||||++||+.+.+.+.+.+.+...+++|+|++||+++++..+ ++++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999876655545689999999999999876 777766
No 327
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=6.6e-34 Score=315.64 Aligned_cols=192 Identities=26% Similarity=0.323 Sum_probs=154.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC-CcC-CCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT-AWI-QTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~-~~i-~~~ 705 (1335)
+.++|++..|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+..+..+. ..+ ++.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 677888888864 579999999999999999999999999999999999999999999999986554442 333 467
Q ss_pred CHHHHhccCCCC---ChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 706 SIRENILFGSPM---DSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 706 Tv~eNIlfg~~~---~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
|++||+.++... +... ..++++..++.+ ...+...+||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGD-----------FIDLPVKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999865321 1111 122222222221 2234567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
||++||+.+++.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999998877655556899999999999886 48999999999998765
No 328
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.4e-33 Score=317.91 Aligned_cols=193 Identities=28% Similarity=0.432 Sum_probs=158.9
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEE
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAY 695 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ay 695 (1335)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|+|..++ +|+|.++|+ ++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46777773 279999999999999999999999999999999999864 999999873 689
Q ss_pred EecCCc-CCCCCHHHHhccCCCC--Ch----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc
Q 000713 696 VSQTAW-IQTGSIRENILFGSPM--DS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY 768 (1335)
Q Consensus 696 v~Q~~~-i~~~Tv~eNIlfg~~~--~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~ 768 (1335)
++|++. .++.|++||+.++... +. ++.++.++..++.+. ....+.+||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK-----------LGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHh
Confidence 999974 5578999999886432 11 123444444444322 23566789999999999999999
Q ss_pred c-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 769 Q-------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 769 ~-------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
+ +|+++||||||++||+.+++.+.+.+.....+|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 8 77999999999999999999988766655556899999999999765 589999999999999999988754
No 329
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.4e-33 Score=307.56 Aligned_cols=172 Identities=27% Similarity=0.361 Sum_probs=149.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~------------- 692 (1335)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 5799999999872
Q ss_pred -EEEEecCCcCCC-CCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 693 -TAYVSQTAWIQT-GSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 693 -~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
++|++|++.+++ .|+++|+ . ....+||||||||++||||++.+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l------------------------~-----------~~~~~LS~G~~qrv~laral~~~ 122 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL------------------------R-----------YVNEGFSGGEKKRNEILQLLLLE 122 (200)
T ss_pred cEEEeecChhhccCccHHHHH------------------------h-----------hccccCCHHHHHHHHHHHHHhcC
Confidence 789999987765 4666655 0 01247999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc--cCCeEEEEeCCeEEEecChHHH
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP--AFDSVLLMSDGEILRAAPYHQL 838 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~--~~D~iivl~~G~i~~~g~~~~l 838 (1335)
|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++.+. .+|++++|++|++.+.| ..|+
T Consensus 123 p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~ 191 (200)
T cd03217 123 PDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKEL 191 (200)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHH
Confidence 9999999999999999999998776665556899999999999887 58999999999999998 4444
No 330
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-31 Score=310.36 Aligned_cols=365 Identities=16% Similarity=0.163 Sum_probs=277.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
..+++..+++.++-.+....+.-.....+.++-..++.++++++.+.+..|-...|+|.+...++.-++.++..+...+-
T Consensus 40 ~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLP 119 (559)
T COG4988 40 LPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLP 119 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677777788888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcc
Q 000713 1036 FAVGATTNACSNLGVLAVVTWQVLF---VSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFE 1112 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~~~~~~~~~---~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~ 1112 (1335)
.++.+.+..+..++.++..+|...+ ++.|+++++..+... ++.+. .+-.-.+-.-+-+||-+.+.|+.|+|+|+
T Consensus 120 q~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~--~a~~~-s~~~~~~~~~ls~~FLD~LrGL~TLr~f~ 196 (559)
T COG4988 120 QMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL--AAKDA-SEKQFSALARLSGHFLDRLRGLETLRAFG 196 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHhHH-HHHHHHHHHHHHHHHHHHhcChHHHHHhc
Confidence 9999999999999999999988654 456777776554322 11111 11222344557799999999999999999
Q ss_pred cHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC-CCcCHHHHHHHHHHHHHHHHHHHH
Q 000713 1113 EEDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVL-LPP-GTFTPGFIGMALSYGLSLNSSLVM 1190 (1335)
Q Consensus 1113 ~e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~-~~~-~~~~~g~~Glalsy~l~l~~~l~~ 1190 (1335)
..+.-.++..+.-.+..+..+...-.+---+..+|++..+-++.+++.... +.. |.++-...=+++--+.-+...+-.
T Consensus 197 ~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~ 276 (559)
T COG4988 197 RTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRD 276 (559)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHH
Confidence 987766666555544444433332222222445666666655555544332 222 455544444556667777778887
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000713 1191 SIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1191 ~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIV 1270 (1335)
+-..|-.-.+...+.|.+..+.+.|.+.+... ......|-...+|+.+|++++|+++. ++++|+||+++|||+++||
T Consensus 277 lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~--~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talv 353 (559)
T COG4988 277 LGSFFHAAAAGEAAADKLFTLLESPVATPGSG--EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALV 353 (559)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCc--cccccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEE
Confidence 77778888888899999999998766543221 11123444456777889999998665 7999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhhH
Q 000713 1271 GRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|+||||||||+++|.++.+|++|+|.+||+|... ++++++|+|+|++|.||||||.
T Consensus 354 G~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi 415 (559)
T COG4988 354 GASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415 (559)
T ss_pred CCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHh
Confidence 9999999999999999999999999999999876 4679999999999999999984
No 331
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.3e-33 Score=314.97 Aligned_cols=199 Identities=26% Similarity=0.306 Sum_probs=154.7
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC--CCCCcEEEEcC-------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV--PHTQGTIQVYG------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~--~~~~G~i~v~g------------- 691 (1335)
+|+++|++++|++ +++++|+||+|++|++++|+|+||||||||+++|+|+. +|++|+|.++|
T Consensus 1 ~i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 77 (248)
T PRK09580 1 MLSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAG 77 (248)
T ss_pred CeEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhh
Confidence 3789999999963 46999999999999999999999999999999999995 69999999987
Q ss_pred -eEEEEecCCcCCC-CCHHHHhccCC-------C---CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCC-CCC
Q 000713 692 -KTAYVSQTAWIQT-GSIRENILFGS-------P---MDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGV-NLS 754 (1335)
Q Consensus 692 -~~ayv~Q~~~i~~-~Tv~eNIlfg~-------~---~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LS 754 (1335)
.++|++|++.++. .|..+++.+.. . .+. ++.++.++..+ ++.+.. ...+. +||
T Consensus 78 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~---~~~~~~~LS 147 (248)
T PRK09580 78 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLK-------MPEDLL---TRSVNVGFS 147 (248)
T ss_pred cceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcC-------CChhhc---ccCCCCCCC
Confidence 2789999986543 35555543210 0 010 01111112111 221111 12233 799
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc--CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA--FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~ 832 (1335)
||||||++||||++++|+++||||||++||+.+.+.+.+.+......++|+|++|||++++.. +|+|++|++|++++.
T Consensus 148 ~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~ 227 (248)
T PRK09580 148 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 227 (248)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEe
Confidence 999999999999999999999999999999999999887655544458999999999999876 799999999999999
Q ss_pred cChHHH
Q 000713 833 APYHQL 838 (1335)
Q Consensus 833 g~~~~l 838 (1335)
|+++++
T Consensus 228 g~~~~~ 233 (248)
T PRK09580 228 GDFTLV 233 (248)
T ss_pred CCHHHH
Confidence 998754
No 332
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.3e-33 Score=315.77 Aligned_cols=180 Identities=24% Similarity=0.336 Sum_probs=146.5
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEEEe-cCCcC-CCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAYVS-QTAWI-QTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ayv~-Q~~~i-~~~Tv~ 708 (1335)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++|++ |++.+ ...|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 46999999999999999999999999999999999999999999999773 68997 55555 467999
Q ss_pred HHhccCCC---CChHH----HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 709 ENILFGSP---MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 709 eNIlfg~~---~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
||+.+... .+.+. .++.++.+++.+ ....+..+||||||||++||||++.+|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEE-----------LLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh-----------HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976432 22221 122233333322 1234567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 782 AVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
+||+.+.+++.+.+.+... +++|+|++||+++++.. ||++++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999886665444 47999999999998765 8999999999998764
No 333
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-33 Score=305.28 Aligned_cols=182 Identities=26% Similarity=0.360 Sum_probs=151.6
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 789999999963 4699999999999999999999999999999999999999999999987 3799
Q ss_pred EecCCcCC-CCCHHHHhccCCCC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
++|++.++ ..|++||+.++... ++.+..+.++..++.+ ..+....+||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEH-----------LIDYPCGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCch-----------hhhCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99998774 68999999986321 1223333444333321 1234556899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
++||||||++||+.+.+.+.+.+.+...++.|+|++||+.+++..+|.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999988766554568999999999999999987553
No 334
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.8e-33 Score=307.50 Aligned_cols=188 Identities=26% Similarity=0.367 Sum_probs=155.4
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----------EE
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------TA 694 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------~a 694 (1335)
+..++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++
T Consensus 9 ~~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~ 85 (214)
T PRK13543 9 PPLLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85 (214)
T ss_pred cceEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceE
Confidence 357999999999963 46999999999999999999999999999999999999999999999883 79
Q ss_pred EEecCCcCCC-CCHHHHhccCCCCC----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc
Q 000713 695 YVSQTAWIQT-GSIRENILFGSPMD----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ 769 (1335)
Q Consensus 695 yv~Q~~~i~~-~Tv~eNIlfg~~~~----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~ 769 (1335)
|++|++.++. .|++||+.++...+ +++.++.++..++.+ ....+..+||||||||++||||++.
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAG-----------YEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChh-----------hccCChhhCCHHHHHHHHHHHHHhc
Confidence 9999987765 49999997643221 112223333333221 1245667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 770 DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 770 ~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
+|+++||||||++||+..++.+.+.+.+...+|+|+|++|||++.+.. +|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999998887665555678999999999999865 799999864
No 335
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.5e-31 Score=337.34 Aligned_cols=411 Identities=8% Similarity=-0.041 Sum_probs=296.7
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHhHhhhccccC---CCcc-hh----HHHHHHHHHHHHHHHHHHHHH
Q 000713 909 PYIQYLNQNKG---FLFFSIASLSHLTFVIGQILQNSWLAANVEN---PNVS-TL----RLIVVYLLIGFVSTLFLMSRS 977 (1335)
Q Consensus 909 ~y~~Y~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wl~w~~~~---~~~~-~~----~~~~vy~~l~~~~~~~~~~~~ 977 (1335)
.+++|++.... +..+.+.+++.++.....+...++...-.+. .+.. .. .++.++++++++..+..++..
T Consensus 81 ~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~ 160 (659)
T TIGR00954 81 FLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLK 160 (659)
T ss_pred HHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555543332 1233344444455555666666665521111 1111 11 122223333444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 000713 978 LSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVLAV-VTW 1056 (1335)
Q Consensus 978 ~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi~~-~~~ 1056 (1335)
.+......+..+.+|++.+++...-+++|||. ++|.+++|+++|++.+...+...+..++..++.+++.++++.. .+|
T Consensus 161 ~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~ 239 (659)
T TIGR00954 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGS 239 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 55666677788888888888888888999997 8899999999999999999999999999999999988887775 888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccHHHHH
Q 000713 1057 QVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPFFHSF 1136 (1335)
Q Consensus 1057 ~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~~~~~ 1136 (1335)
.+.++++.+.++..++.+++.+..+++.+-.....+-..++++|+++|+.+||+|+.|++..+++.+..++..+......
T Consensus 240 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~ 319 (659)
T TIGR00954 240 VGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII 319 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777766667777777778887788888888888889999999999999999999999988888888888777777666
Q ss_pred HHHHHHHHHHHHHHHHH---HH-HHHHHHHhcC----CCCcCHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHH
Q 000713 1137 AANEWLIQRLETLSATV---IS-SAAFCMVLLP----PGTFTPGF-IGMALSY---GLSLNSSLVMSIQNQCTLANYIIS 1204 (1335)
Q Consensus 1137 ~~~~Wl~~rl~~l~~~~---~~-~~~~~~v~~~----~~~~~~g~-~Glalsy---~l~l~~~l~~~v~~~~~le~~~~s 1204 (1335)
....|+..-.+++.... +. +.+...+... .|.++.|. ++..++| ..++...+..++....++.....+
T Consensus 320 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~ 399 (659)
T TIGR00954 320 KFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGF 399 (659)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666554321 11 1111112221 25667664 4545554 556688889999999999999999
Q ss_pred HHHHHHhhcCCCCCC------CcccC---C-----CCCCCC------CccceEEEEEEEEEeCCCCCCccccceEEeeCC
Q 000713 1205 VERLNQYMHVPSEAP------EVVED---N-----RPPPNW------PVVGKVDICDLQIRYRPDSPLVLKGISCTFEGG 1264 (1335)
Q Consensus 1205 veRi~~y~~~~~E~~------~~~~~---~-----~p~~~W------P~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~G 1264 (1335)
.+||.++.+.++|.. ...++ . +++..+ ...|.|+++||+++|+.+ +++|+|+||+|++|
T Consensus 400 ~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~G 478 (659)
T TIGR00954 400 TARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSG 478 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCC
Confidence 999999986533211 00000 0 000001 134779999999999644 36999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccccccccHHhhH
Q 000713 1265 HKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1265 ekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
|++||+|++|||||||+++|.|+++|++|+|.+|+ ++.++++||+|.+|++||+||.
T Consensus 479 e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----~~~i~~v~Q~~~l~~~tv~eni 535 (659)
T TIGR00954 479 NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----KGKLFYVPQRPYMTLGTLRDQI 535 (659)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----CCcEEEECCCCCCCCcCHHHHH
Confidence 99999999999999999999999999999999985 5679999999999999999983
No 336
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.2e-33 Score=304.15 Aligned_cols=183 Identities=27% Similarity=0.369 Sum_probs=154.0
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------eEEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------KTAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------~~ay 695 (1335)
++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+|++|+|.++| +++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 468999999964 4689999999999999999999999999999999999999999999876 3789
Q ss_pred EecCCcCC-CCCHHHHhccCCC-CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 696 VSQTAWIQ-TGSIRENILFGSP-MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~-~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
++|++.++ +.|++||+.+..+ .+.++.++.++..++.+.. .....+||||||||++||||++++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFE-----------DRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhh-----------cCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99998764 6899999987643 2344556666666664322 235678999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEE
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLM 824 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl 824 (1335)
+||||||++||+.+.+.+.+.+.+...+|+|+|++||+...++ .+|+++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999998766555456899999999987765 56898876
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=6.9e-32 Score=363.29 Aligned_cols=206 Identities=22% Similarity=0.334 Sum_probs=173.3
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..|+++|++++|++. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1934 ~~~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~ 2012 (2272)
T TIGR01257 1934 KTDILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ 2012 (2272)
T ss_pred CCceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhh
Confidence 34579999999999642 257999999999999999999999999999999999999999999999882
Q ss_pred -EEEEecCCcCC-CCCHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 -TAYVSQTAWIQ-TGSIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 -~ayv~Q~~~i~-~~Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+|||||++.++ +.|++||+.+... ..++ +.++.++.++|.+. .+++..+||||||||++|
T Consensus 2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHH
Confidence 79999997665 6799999976321 1221 22334455555332 235667899999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|||++.+|+|++|||||+|||+..++.+++.+.+...+|+|||++||++++++. ||+|++|++|+++..|+++++.++
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 999999999999999999999999999998776655679999999999999875 899999999999999999998653
No 338
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2e-33 Score=349.98 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=167.1
Q ss_pred ccEEEEeeEEEecCC--------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------
Q 000713 626 RAISIKSASFSWEES--------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------ 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~--------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------ 691 (1335)
..|+++|++++|+.. +++++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 469999999999531 12469999999999999999999999999999999999985 899999987
Q ss_pred ----------eEEEEecCCc--C-CCCCHHHHhccCCC-----CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC
Q 000713 692 ----------KTAYVSQTAW--I-QTGSIRENILFGSP-----MDS----HQYQETLERCSLIKDLELLPYGDNTEIGER 749 (1335)
Q Consensus 692 ----------~~ayv~Q~~~--i-~~~Tv~eNIlfg~~-----~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~ 749 (1335)
+++|++|++. + .+.|++||+.++.. .+. ++..+.++..++..+ ....+
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~ 422 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPE----------TRHRY 422 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHH----------HHhcC
Confidence 2799999972 4 45799999987521 111 122233333333211 12456
Q ss_pred CCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCC
Q 000713 750 GVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDG 827 (1335)
Q Consensus 750 g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G 827 (1335)
+.+|||||||||+||||++.+|+++||||||++||+.+++.+++.+.+...+ |+|+|+||||++++. .||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 7789999999999999999999999999999999999999999877665443 899999999999876 48999999999
Q ss_pred eEEEecChHHHHhc
Q 000713 828 EILRAAPYHQLLAS 841 (1335)
Q Consensus 828 ~i~~~g~~~~l~~~ 841 (1335)
++++.|+.+++.+.
T Consensus 503 ~i~~~~~~~~~~~~ 516 (529)
T PRK15134 503 EVVEQGDCERVFAA 516 (529)
T ss_pred EEEEEcCHHHHhcC
Confidence 99999999998653
No 339
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-33 Score=350.38 Aligned_cols=207 Identities=21% Similarity=0.354 Sum_probs=165.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC-CCCcEEEEcCe------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP-HTQGTIQVYGK------------ 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~-~~~G~i~v~g~------------ 692 (1335)
..|+++|++++|+..+++++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 46999999999953223569999999999999999999999999999999999998 59999999772
Q ss_pred --EEEEecCC---cC-CCCCHHHHhccCCC--C------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 --TAYVSQTA---WI-QTGSIRENILFGSP--M------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~---~i-~~~Tv~eNIlfg~~--~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++ .+ .+.|+.||+.++.. + +....++ ...+-++.+...+ .....+..+||||||
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgG~k 411 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELK-----TILESIQRLKVKT-ASPELAIARLSGGNQ 411 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHH-----HHHHHHHhcCccC-CCcccccccCCHHHH
Confidence 79999996 34 46799999987521 1 1111000 0111222222110 123466789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~ 837 (1335)
|||+||||++.+|+++||||||++||+.+.+.+++.+.....+|+|||++|||++++.. ||++++|++|+++..|+.++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999988766655679999999999998864 89999999999999998877
Q ss_pred H
Q 000713 838 L 838 (1335)
Q Consensus 838 l 838 (1335)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
No 340
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-34 Score=284.96 Aligned_cols=179 Identities=31% Similarity=0.408 Sum_probs=155.4
Q ss_pred CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCCCHH
Q 000713 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 642 ~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~Tv~ 708 (1335)
+.++|+++||++.+||.++|+||+|||||||+++++-+++|++|++.+.|+ ++||.|.|-+|.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 468999999999999999999999999999999999999999999999984 6899999999999999
Q ss_pred HHhccCCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 709 ENILFGSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 709 eNIlfg~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
||+.|.-. .|+......++..++ +++.+.++..+||||+|||++|+|-|.--|+|+|||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l----------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL----------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC----------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99999632 344444444444333 345667788899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHH-cCCCEEEEEccCCCc-cccCCeEEEEeCCeEE
Q 000713 784 DAHTASSLFNDYVMEA-LSGKVVLLVTHQVDF-LPAFDSVLLMSDGEIL 830 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~ 830 (1335)
|+++.+.|-+.+.+.. .++..++.||||.+. ...+|+++-+..|.+-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999877666654 568899999999988 7889999999998863
No 341
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.8e-33 Score=346.89 Aligned_cols=209 Identities=23% Similarity=0.366 Sum_probs=167.2
Q ss_pred ccEEEEeeEEEecC--CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc-C-----------
Q 000713 626 RAISIKSASFSWEE--SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY-G----------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~--~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~-g----------- 691 (1335)
..++++|++++|++ .+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46999999999953 122469999999999999999999999999999999999999999999985 3
Q ss_pred --------eEEEEecCCcCC-CCCHHHHhccCCC--CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 692 --------KTAYVSQTAWIQ-TGSIRENILFGSP--MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 692 --------~~ayv~Q~~~i~-~~Tv~eNIlfg~~--~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+++|++|++.++ +.|++||+.++.. ...+ +..+.++.+++... ........++.+||||
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEE------KAEEILDKYPDELSEG 431 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCc------cchhhhhCChhhCCHH
Confidence 279999998665 4699999976321 1111 12223333332110 0001235677899999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~ 834 (1335)
||||++||||++.+|+++||||||++||+.+.+.+.+.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999887765544 38999999999999864 89999999999999999
Q ss_pred hHHHHh
Q 000713 835 YHQLLA 840 (1335)
Q Consensus 835 ~~~l~~ 840 (1335)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888753
No 342
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.4e-33 Score=303.16 Aligned_cols=185 Identities=26% Similarity=0.345 Sum_probs=155.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----------EEEE
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------TAYV 696 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------~ayv 696 (1335)
.++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|. ++|+
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEe
Confidence 4889999999963 46899999999999999999999999999999999999999999999883 5899
Q ss_pred ecCCcC-CCCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCC
Q 000713 697 SQTAWI-QTGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 697 ~Q~~~i-~~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ 772 (1335)
+|++.+ ++.|++||+.+.... ++++..+.++..++.+.. ..+..+||||||||++||||++++|+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~p~ 147 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-----------HLPFGYLSAGQKRRVALARLLVSNRP 147 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-----------cCChhhcCHHHHHHHHHHHHHhcCCC
Confidence 987654 578999999764322 233445556666554322 23456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
++||||||++||+.+.+++.+.+.+...+|+|+|++||++++++. |+++.++.
T Consensus 148 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 148 IWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999987766555568999999999999988 99988754
No 343
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=294.35 Aligned_cols=201 Identities=27% Similarity=0.439 Sum_probs=168.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------E
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ 693 (1335)
+|+++|++++|++ +.+++|+|++|++|.+++++||||+||||||+++.+++++++|+|.++|. +
T Consensus 1 MI~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 1 MITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred CeeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 4789999999964 68999999999999999999999999999999999999999999999995 3
Q ss_pred EEEecCCcCC-CCCHHHHhccCC-CCCh--------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 694 AYVSQTAWIQ-TGSIRENILFGS-PMDS--------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 694 ayv~Q~~~i~-~~Tv~eNIlfg~-~~~~--------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+..-|+..+. ..||||-+.||+ ||.+ ...+++++-..|.+ + -++.-.+||||||||.-+
T Consensus 78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~-l----------~dryLd~LSGGQrQRAfI 146 (252)
T COG4604 78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED-L----------SDRYLDELSGGQRQRAFI 146 (252)
T ss_pred HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc-h----------HHHhHHhcccchhhhhhh
Confidence 5666776664 569999999996 3432 22333333332211 1 123445799999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS-GKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~-~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|..+++|.|.++||||+++||......+++.+.+...+ |||+++|-||++|+.. +|+|+.|+||+++.+|+++|+.+.
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999887765543 9999999999999874 799999999999999999999764
No 344
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.2e-33 Score=293.20 Aligned_cols=161 Identities=29% Similarity=0.449 Sum_probs=132.4
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCH
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSI 707 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv 707 (1335)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- . ..+.
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~--~------~~~~ 69 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEV--S------FASP 69 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC--C------cCCH
Confidence 468999999964 4799999999999999999999999999999999999999999999988421 0 0000
Q ss_pred HHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHH
Q 000713 708 RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 708 ~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~ 787 (1335)
++ .+. ...+ ..+ +||||||||++||||++++|+++||||||++||+.+
T Consensus 70 ~~-----------~~~---~~i~------~~~------------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~ 117 (163)
T cd03216 70 RD-----------ARR---AGIA------MVY------------QLSVGERQMVEIARALARNARLLILDEPTAALTPAE 117 (163)
T ss_pred HH-----------HHh---cCeE------EEE------------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHH
Confidence 00 000 0000 000 199999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 788 ASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 788 ~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
++++.+.+.+...+++|+|++||+++.+.. +|++++|++|++++
T Consensus 118 ~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 118 VERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999988776555568999999999998765 89999999999875
No 345
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=3.7e-30 Score=300.30 Aligned_cols=458 Identities=20% Similarity=0.219 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 000713 364 ESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGGEI---MNYVTVDAYRIGEFPF-WFHQIWTTSVQLC 439 (1335)
Q Consensus 364 ~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G~I---vNlms~D~~ri~~~~~-~~h~~w~~plqi~ 439 (1335)
.++...-..|...-+.+|.|.-+..-+|++=++-...-+-.+..+.| =.+++.|++|+..... ....+-.+|+.++
T Consensus 135 ~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~ 214 (659)
T KOG0060|consen 135 ISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLV 214 (659)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeee
Confidence 34444556777888999999999999999888643211111111122 2478899999876544 3345556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHH
Q 000713 440 IALIILFHAVGLATIAALVV-ITITVLCNTPLAKLQHKFQT-KLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEI 517 (1335)
Q Consensus 440 lal~lL~~~lG~a~l~gl~v-~vl~~~~~~~~~~~~~~~q~-~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~ 517 (1335)
.-.+.+|...||...+.+.. .++-..+|..+.+-+.+... +....-|-|-+. +++..|-..|-+|+-+..-...++.
T Consensus 215 ~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h-~rlr~NaE~iAFY~g~~~E~~~~~~ 293 (659)
T KOG0060|consen 215 YYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKH-SRLRVNAEEIAFYRGGQVEHQRTDQ 293 (659)
T ss_pred hhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhhe-eeeeecchhhhhhccCchHHHHHHH
Confidence 88888888888743333221 22233334333332222222 222233444443 3566777888999887655555544
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH---HHhc---CcccHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000713 518 LRNVEYKWLSAVQLRKAYNGFLFWSSPVLVSTATFGAC---YFLN---VPLYASNVFTFVA----TLRLVQDPIRIIPDV 587 (1335)
Q Consensus 518 ~R~~El~~l~~~~~~~a~~~~~~~~~p~lv~~~tF~~~---~l~~---~~Lt~~~vFt~la----lf~~L~~pl~~lp~~ 587 (1335)
.=+.=++.+++.........++-...-.+..++.+.+. ++.+ ..++++..++-++ .|.-|...+..+...
T Consensus 294 ~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~ 373 (659)
T KOG0060|consen 294 RFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDL 373 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33333444444333332222221111122222221111 1112 3466766555442 233334445555555
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCCC-------------cccc------cccCCCCCCcccEEEEeeEEEecCCCCCCcee
Q 000713 588 IGVFIQANVAFSRIVNFLEA-PELQ-------------SMNI------RQKGNIENVNRAISIKSASFSWEESSSKPTMR 647 (1335)
Q Consensus 588 i~~~~qa~vS~~RI~~fL~~-~e~~-------------~~~~------~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~L~ 647 (1335)
-..+.+-..-..||.++.+. ++.. .... +..+...+.++.|+++++++.-|++ +..+.+
T Consensus 374 ~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie 452 (659)
T KOG0060|consen 374 SRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GDLLIE 452 (659)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Cceeee
Confidence 55566666667888888752 1111 0000 0011112356899999999998775 445778
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C---eEEEEecCCcCCCCCHHHHhccCC-------
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G---KTAYVSQTAWIQTGSIRENILFGS------- 715 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g---~~ayv~Q~~~i~~~Tv~eNIlfg~------- 715 (1335)
|+||+|+.|+-+.|+||||||||||++.+.|+.+..+|++... | .+-|+||.|....||.||.+.+..
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~ 532 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDS 532 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccccccc
Confidence 8999999999999999999999999999999999999999763 3 378999999999999999999972
Q ss_pred -CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHH
Q 000713 716 -PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFND 794 (1335)
Q Consensus 716 -~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~ 794 (1335)
..++++..+.++..+|.+-++....-|+...-+-...||+|+|||+++||-+|++|++-+|||.|||||.++...+++.
T Consensus 533 ~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~ 612 (659)
T KOG0060|consen 533 KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRK 612 (659)
T ss_pred cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHH
Confidence 2355678888888888887777765555556677889999999999999999999999999999999999999999886
Q ss_pred HHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 795 YVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 795 ~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|. ..|.|.|-|.|+-+.-+.-|.++-|+.
T Consensus 613 ~r---~~giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 613 CR---EMGITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HH---HcCCeEEEeccHHHHHhhhhEEEEecC
Confidence 64 358999999999998888899999976
No 346
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.9e-33 Score=300.08 Aligned_cols=178 Identities=31% Similarity=0.471 Sum_probs=141.7
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCCCCHH
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQTGSIR 708 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~ 708 (1335)
+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|..- .+ ......+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~--~~---~~~~~~~ 72 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL--AS---LSPKELA 72 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC--Cc---CCHHHHH
Confidence 47899999964 4699999999999999999999999999999999999999999999998521 00 0000122
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
..+.+- .++++.+++.+.+ ..++.+||||||||++||||++.+|+++||||||++||+.+.
T Consensus 73 ~~i~~~--------~q~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~ 133 (180)
T cd03214 73 RKIAYV--------PQALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQ 133 (180)
T ss_pred HHHhHH--------HHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 222211 1155556655433 245678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEec
Q 000713 789 SSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 789 ~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g 833 (1335)
+.+.+.+.+...+ ++|+|++||+++++. .+|++++|++|++.+.|
T Consensus 134 ~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 134 IELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9888766554444 789999999999975 58999999999998653
No 347
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-32 Score=298.81 Aligned_cols=180 Identities=25% Similarity=0.346 Sum_probs=149.8
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe---------EEEEec
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---------TAYVSQ 698 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---------~ayv~Q 698 (1335)
++++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|. ++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 789999999953 3444 599999999999999999999999999999999999999999883 689999
Q ss_pred CCcC-CCCCHHHHhccCCCC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 699 TAWI-QTGSIRENILFGSPM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 699 ~~~i-~~~Tv~eNIlfg~~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
++.+ ++.|++||+.+.... ..++..++++.+++.+. ..+++.+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 678999999875432 22344455555555432 234677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
|||||++||+.+.+.+.+.+.....+++|+|++||+++.++.+|.+.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999998888766544457899999999999999998763
No 348
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.1e-32 Score=309.50 Aligned_cols=192 Identities=23% Similarity=0.323 Sum_probs=154.3
Q ss_pred EEecCCCCCCceeeeeeEee-----CCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-eEEEEecCCc-CCCCCH
Q 000713 635 FSWEESSSKPTMRNISLEVR-----PGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-KTAYVSQTAW-IQTGSI 707 (1335)
Q Consensus 635 ~~~~~~~~~~~L~~isl~i~-----~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-~~ayv~Q~~~-i~~~Tv 707 (1335)
|+|++. ...++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++| +++|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 457642 357888888886 7999999999999999999999999999999999999 8999999986 467899
Q ss_pred HHHhccCCC-C--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCC
Q 000713 708 RENILFGSP-M--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVD 784 (1335)
Q Consensus 708 ~eNIlfg~~-~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD 784 (1335)
+||+.+... . ......++++.+++.+. ...++.+||||||||++||||++.+|++|||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQI-----------LDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHH-----------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999975322 1 12233455555555332 235667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEE--EecChHHHH
Q 000713 785 AHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL--RAAPYHQLL 839 (1335)
Q Consensus 785 ~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~--~~g~~~~l~ 839 (1335)
+.++..+.+.+.+... .++|+|+||||++.+.. ||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999988876655443 48999999999999874 8999999775443 456666654
No 349
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-32 Score=306.21 Aligned_cols=187 Identities=26% Similarity=0.358 Sum_probs=150.0
Q ss_pred EEEEeeEEEecCC---C-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C----------
Q 000713 628 ISIKSASFSWEES---S-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G---------- 691 (1335)
Q Consensus 628 i~i~~~~~~~~~~---~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g---------- 691 (1335)
|+++|++++|+.. + .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2468999999999999999999999999999999999999999999986 3
Q ss_pred ---------eEEEEecCCcCC-CCCHHHHhccCC---CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 ---------KTAYVSQTAWIQ-TGSIRENILFGS---PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 ---------~~ayv~Q~~~i~-~~Tv~eNIlfg~---~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
+++|++|++.++ +.|++||+.++. ..+.+ +..+.++..++.+. ....++.+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPER----------LWHLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchh----------hhhCCcccCC
Confidence 268999998765 569999997632 12211 11222222222111 1134577899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEE
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLM 824 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl 824 (1335)
||||||++||||++.+|+++||||||++||+++.+.+.+.+.+...+|+|+|++||+.+++. .||+++.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999998876655556899999999999886 58999876
No 350
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-30 Score=302.94 Aligned_cols=358 Identities=18% Similarity=0.222 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHH
Q 000713 956 LRLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLI 1035 (1335)
Q Consensus 956 ~~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~ 1035 (1335)
...+..|.+..+++.+|..++.+.++....++-+....+.+++.+...++||.+-.+|.+-++.-+-...|...+...+.
T Consensus 74 ~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~ 153 (591)
T KOG0057|consen 74 TALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVF 153 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999988887766665555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHccccchHHHHHHHHHcchHHHHhccc
Q 000713 1036 FAVGATTNACSNLGVLA-VVTWQVLFVSIPVIFLAIRLQRYYFVTAKE-LMRLNGTTKSLVANHLAESIAGAMTIRAFEE 1113 (1335)
Q Consensus 1036 ~~~~~~~~~~~~l~vi~-~~~~~~~~~~ipl~~~~~~~q~~y~~tsre-l~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~ 1113 (1335)
.++..++.+......+. -..+.+.++++-....|..+ -.+...-|. .|+--..+....-+..-|++.+--+|++|+.
T Consensus 154 ~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~-Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNn 232 (591)
T KOG0057|consen 154 NIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF-TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNN 232 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee-EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHccc
Confidence 55444444433332222 22344433333222222111 111111111 1122222334445667899999999999999
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc----CCCCcCHHHHHHHHHHHHHHHHHH
Q 000713 1114 EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFC-MVLL----PPGTFTPGFIGMALSYGLSLNSSL 1188 (1335)
Q Consensus 1114 e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~----~~~~~~~g~~Glalsy~l~l~~~l 1188 (1335)
|++=.+++...+.+..++.... .+|+++ +++....++.+...+ +++. ..+.++.|..-+.-+...++...+
T Consensus 233 E~~Ea~~y~~~l~~~~~~~~~~---~~sl~~-lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l 308 (591)
T KOG0057|consen 233 EEYEASRYDGSLKTYERAGLKY---SSSLAF-LNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPL 308 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhH---HhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHH
Confidence 9998888888887766654433 344443 445554444333222 2222 133556666767777788888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEE
Q 000713 1189 VMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIG 1268 (1335)
Q Consensus 1189 ~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVG 1268 (1335)
+.+-..++++-.++.-.+-.+...+. +. .+.+. |++--+..|.|+|+||++.|.|+. +||||+||+|++|||||
T Consensus 309 ~~Lg~vyr~~~q~l~Dm~~~~~l~~~--~~--~i~~~-~~~i~~~~~~I~F~dV~f~y~~k~-~iL~gvsf~I~kGekVa 382 (591)
T KOG0057|consen 309 NFLGSVYRELRQALTDMRTLFILLEV--DE--DIQEA-ALPIELFGGSIEFDDVHFSYGPKR-KVLKGVSFTIPKGEKVA 382 (591)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh--hh--hhhhc-cCCcccCCCcEEEEeeEEEeCCCC-ceecceeEEecCCCEEE
Confidence 88888888887777766655544321 11 11111 222223457899999999998765 59999999999999999
Q ss_pred EEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1269 IVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1269 IVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
|||++||||||++++||||+| .+|+|+|||+||+. |+.|++||||..||++||-+|
T Consensus 383 IvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 383 IVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred EECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 999999999999999999999 99999999999985 678999999999999999875
No 351
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.8e-33 Score=275.11 Aligned_cols=204 Identities=25% Similarity=0.407 Sum_probs=165.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--------------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--------------- 691 (1335)
+|.++|++|.|+. ..+|.||+|+-+.||.+.+.||+|+|||||++.+.=+.-|.+|+..+.|
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 4799999999999999999999999999999999888889999999876
Q ss_pred ----eEEEEecCCcC-CCCCHHHHhccCC----CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 692 ----KTAYVSQTAWI-QTGSIRENILFGS----PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 692 ----~~ayv~Q~~~i-~~~Tv~eNIlfg~----~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
++|.|+|+-.+ +..||.||+.-.. .+.++ +..-++..+.+.+..-+..| +.+..|||||+|||+
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~--qa~~~a~ellkrlrl~~~ad-----r~plhlsggqqqrva 151 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKD--QALARAEKLLKRLRLKPYAD-----RYPLHLSGGQQQRVA 151 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHH--HHHHHHHHHHHHhccccccc-----cCceecccchhhhHH
Confidence 36999998765 5679999987421 01111 11112222333333333333 456689999999999
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHh
Q 000713 763 LARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 763 LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|||||+.+|+++|+||||+||||+...++.+.+.+....|.|-++|||.+++.++ +.+|+.|++|+|++.|+.+-.-+
T Consensus 152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhhccC
Confidence 9999999999999999999999999999988666666679999999999999876 69999999999999999876643
No 352
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-32 Score=305.74 Aligned_cols=179 Identities=31% Similarity=0.492 Sum_probs=148.0
Q ss_pred eEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcC---CCCCHHHHhccCCC---
Q 000713 651 LEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWI---QTGSIRENILFGSP--- 716 (1335)
Q Consensus 651 l~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i---~~~Tv~eNIlfg~~--- 716 (1335)
|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++|++|++.+ ++.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999999984 8999999854 35799999987521
Q ss_pred --C--C-h---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 717 --M--D-S---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 717 --~--~-~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
. . . ++..+.++.+++.+ ....+..+||||||||++||||++++|+++||||||++||+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTE-----------LADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCch-----------hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 1 1 12223333333321 22346678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 789 SSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 789 ~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+.+.+.+...+|+|+|++||+++++. .||+++++ +|++++.|+++++.++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999877665556899999999999876 48999999 8999999999998653
No 353
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2e-32 Score=298.12 Aligned_cols=180 Identities=25% Similarity=0.341 Sum_probs=147.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe------------EEE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------TAY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------~ay 695 (1335)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 468999999964 46999999999999999999999999999999999999999999999873 689
Q ss_pred EecCCcCC-CCCHHHHhccCCCC---ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 696 VSQTAWIQ-TGSIRENILFGSPM---DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 696 v~Q~~~i~-~~Tv~eNIlfg~~~---~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
++|++.++ +.|++||+.+.... ++.+..+.++..++.+.+ ..+..+||||||||++||||++.+|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFE-----------DLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHh-----------cCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99998765 47999999764322 122345555555554332 3456789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++|||||++||+.+.+.+.+.+.+...+|+|+|++||+...+. +++++
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999998888766655566899999999985443 25544
No 354
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=340.75 Aligned_cols=200 Identities=23% Similarity=0.400 Sum_probs=166.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc--
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW-- 701 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~-- 701 (1335)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++||++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 47999999999964 4699999999999999999999999999999999999999999999987 6899999974
Q ss_pred CC-CCCHHHHhccCC--CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 702 IQ-TGSIRENILFGS--PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 702 i~-~~Tv~eNIlfg~--~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
++ +.|++||+.+.. ..++++.++.++..++..+ ....++.+||||||||++||||++.+|+++||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 464 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQD----------DIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDE 464 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChh----------HhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 33 479999986421 1123334455555554211 1235677999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHHhc
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLLAS 841 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~~~ 841 (1335)
||++||+.+.+.+.+.+.+ . +.|+|+||||++++.. ||+|++|++|+++ ..|+++++.+.
T Consensus 465 Pt~~LD~~~~~~l~~~l~~-~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 465 PTNHMDMESIESLNMALEK-Y--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCCCCHHHHHHHHHHHHH-C--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 9999999999998875543 2 4599999999999865 8999999999998 78998887643
No 355
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=301.72 Aligned_cols=191 Identities=26% Similarity=0.379 Sum_probs=159.8
Q ss_pred ccEEEEeeEEEecCCCC------CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC
Q 000713 626 RAISIKSASFSWEESSS------KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT 699 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~------~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~ 699 (1335)
..++++|+++.|+.... ..+++||||+|++||.++|||+||||||||-++|+|+++|++|+|.++|+...-
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--- 79 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--- 79 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh---
Confidence 35889999999975321 368999999999999999999999999999999999999999999999864110
Q ss_pred CcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 700 AWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 700 ~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
.+ ..-..+++.+.++..++.++. ..+.+++|||||+|||+||||+.-+|+++++|||
T Consensus 80 -----~~--------~~~~~~~v~elL~~Vgl~~~~----------~~ryPhelSGGQrQRi~IARALal~P~liV~DEp 136 (268)
T COG4608 80 -----LS--------KEERRERVLELLEKVGLPEEF----------LYRYPHELSGGQRQRIGIARALALNPKLIVADEP 136 (268)
T ss_pred -----cc--------hhHHHHHHHHHHHHhCCCHHH----------hhcCCcccCchhhhhHHHHHHHhhCCcEEEecCc
Confidence 00 111234566677777665443 3467889999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhcc
Q 000713 780 FSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
+|+||..++.++.+.+.+.. ..|-|.+++|||++.+.+ +|+|.||..|+|++.|+.+++..+.
T Consensus 137 vSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p 201 (268)
T COG4608 137 VSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201 (268)
T ss_pred hhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCC
Confidence 99999999999998666543 348999999999999986 6999999999999999999998753
No 356
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-33 Score=342.71 Aligned_cols=199 Identities=21% Similarity=0.390 Sum_probs=160.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 264 ~~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 338 (510)
T PRK09700 264 TVFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 (510)
T ss_pred cEEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHC
Confidence 4699999998652 389999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCC----cCCCCCHHHHhccCCCC------------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 692 KTAYVSQTA----WIQTGSIRENILFGSPM------------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 692 ~~ayv~Q~~----~i~~~Tv~eNIlfg~~~------------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
+++|++|++ .+.+.|++||+.++... .....+ + ...+-++.+... .........+|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~l~-~~~~~~~~~~LSg 412 (510)
T PRK09700 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQ---R--TAENQRELLALK-CHSVNQNITELSG 412 (510)
T ss_pred CcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHH---H--HHHHHHHhcCCC-CCCccCccccCCh
Confidence 269999984 33467999999876321 111000 0 011222332211 0124567789999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecC
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~ 834 (1335)
||||||+||||++.+|+++||||||++||+.+.+.+.+.+.+...+|+|+|++|||++++. .||++++|++|+++..++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999876655556899999999999875 589999999999998876
Q ss_pred h
Q 000713 835 Y 835 (1335)
Q Consensus 835 ~ 835 (1335)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
No 357
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-33 Score=294.84 Aligned_cols=205 Identities=24% Similarity=0.416 Sum_probs=174.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------eEEEEe
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------KTAYVS 697 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------~~ayv~ 697 (1335)
++++++++++|++ +.+++|+||++++|++.+++|+||+||||.+++|+|+++|++|+|.++| +|||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 5889999999964 6799999999999999999999999999999999999999999999999 799999
Q ss_pred cCCcC-CCCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCE
Q 000713 698 QTAWI-QTGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADI 773 (1335)
Q Consensus 698 Q~~~i-~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~i 773 (1335)
.+--+ +..||.|.+.|-.. +.....++- +...++.+.-.+ .-.++..+||-|.+|+|++--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~-----~~~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKK-----LQAWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHH-----HHHHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 99765 67899999987433 333322221 222333333222 12467789999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 774 YLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 774 lLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
++||||||||||.+.+.+-+.+++...+|+|||+.||.++.++. ||+++.|++|+.+.+|+.+++.++
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 99999999999999988877777888899999999999999875 999999999999999999998764
No 358
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.6e-33 Score=341.86 Aligned_cols=206 Identities=19% Similarity=0.306 Sum_probs=162.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-CCcEEEEcC-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-TQGTIQVYG------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-~~G~i~v~g------------- 691 (1335)
..++++|++++|+.++++.+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 369999999988432234699999999999999999999999999999999999985 899999977
Q ss_pred -eEEEEecCC----cCCCCCHHHHhccCCC--C------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 -KTAYVSQTA----WIQTGSIRENILFGSP--M------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 -~~ayv~Q~~----~i~~~Tv~eNIlfg~~--~------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
+++|++|++ .+++.|++||+.++.. . +....++ ...+-++.+...+ .....++.+||||||
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~-~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQ-----IIGSAIQRLKVKT-ASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHH-----HHHHHHHhcCccC-CCccCccccCCHHHH
Confidence 269999995 3456799999987531 1 1110000 0111122222110 113456778999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+++.+.....+|+|+|++|||++++. .||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999998866655567899999999999986 489999999999998775543
No 359
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2e-32 Score=296.17 Aligned_cols=161 Identities=24% Similarity=0.405 Sum_probs=133.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC---------------eEEEEecCC--cCCCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG---------------KTAYVSQTA--WIQTG 705 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g---------------~~ayv~Q~~--~i~~~ 705 (1335)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .+++.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 4699999999999999999999999999999999999999999999876 268999998 46678
Q ss_pred CHHHHhccCCC---CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 706 SIRENILFGSP---MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 706 Tv~eNIlfg~~---~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
|++||+.++.. .+.+ +.++.++..++.+ ...+++.+||||||||++||||++.+|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASG-----------LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchh-----------hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 2222 2233334334332 2234667899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF 814 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~ 814 (1335)
||++||+.+.+.+.+.+.+...+|+|+|++||++++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999988766555568999999999875
No 360
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=296.62 Aligned_cols=184 Identities=24% Similarity=0.402 Sum_probs=160.2
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------------EEEEecCCcCC-CCCHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-----------------TAYVSQTAWIQ-TGSIRE 709 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-----------------~ayv~Q~~~i~-~~Tv~e 709 (1335)
++||+.+.-.++||-|++|||||||+++|.|+.+|++|.|.++|+ +|||+|++-+| ..||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688888886799999999999999999999999999999999983 79999999876 669999
Q ss_pred HhccCCCCC-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH
Q 000713 710 NILFGSPMD-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 710 NIlfg~~~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~ 788 (1335)
|+.||.... ....+++++-.++.+-++. ++.+||||+||||+|+|||..+|+++|+|||+|+||..-.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R-----------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDR-----------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhh-----------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 999997654 4566777777676666654 5568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 789 SSLFNDYVMEALS-GKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 789 ~~i~~~~~~~~~~-~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
++++-.+.+...+ +.-+++|||.++++. .||+|++|++|++...|+.++++++.
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9998765544433 678999999998864 58999999999999999999998653
No 361
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.9e-32 Score=341.87 Aligned_cols=191 Identities=29% Similarity=0.453 Sum_probs=159.1
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC--CcEEEEcCe---------EEEEecCCcCC-CCCHHHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT--QGTIQVYGK---------TAYVSQTAWIQ-TGSIREN 710 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~--~G~i~v~g~---------~ayv~Q~~~i~-~~Tv~eN 710 (1335)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|+ ++||+|++.++ ..||+||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 56999999999999999999999999999999999999885 899999984 79999998876 5699999
Q ss_pred hccCCC------CChHH----HHHHHHHhccHHHHhhCCCCCCccccC-CCCCCCHHHHHHHHHHHHHccCCCEEEEeCC
Q 000713 711 ILFGSP------MDSHQ----YQETLERCSLIKDLELLPYGDNTEIGE-RGVNLSGGQKQRIQLARALYQDADIYLLDDP 779 (1335)
Q Consensus 711 Ilfg~~------~~~~~----~~~~~~~~~l~~dl~~l~~gd~t~ig~-~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP 779 (1335)
+.|+.. .++++ .+++++..+| ++..+|.+|+ .+.+||||||||++||||++++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 987531 12211 2223333322 2233566765 4678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-c-ccCCeEEEEeCCeEEEecChHHHHh
Q 000713 780 FSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-L-PAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 780 ~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l-~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
|+|||+.++.++.+.+.+...+|+|+|++||+++. + ..+|+|++|++|++++.|+.+++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999998776655579999999999984 4 5689999999999999999998853
No 362
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=4e-32 Score=336.09 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=161.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|+++ ..+++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 256 ~~l~~~~~~~-------~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 328 (501)
T PRK11288 256 VRLRLDGLKG-------PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRA 328 (501)
T ss_pred cEEEEecccc-------CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhC
Confidence 3588899873 14899999999999999999999999999999999999999999999863
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCCCC---------ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGSPM---------DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~~~---------~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++ ...+.|+.||+.++... +....++. ..+-++.+... ......+..+||||||
T Consensus 329 ~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 329 GIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAEN-----ADRFIRSLNIK-TPSREQLIMNLSGGNQ 402 (501)
T ss_pred CCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHH-----HHHHHHhcCcc-cCCccCccccCCHHHH
Confidence 68999996 34568999999875321 11110010 11122222211 1123456789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+.+.+++.+.+....|.|+|+||||++++. .||++++|++|++++.|+.++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999998866665566899999999999986 589999999999999998876
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 53
No 363
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=4.9e-32 Score=335.34 Aligned_cols=199 Identities=22% Similarity=0.391 Sum_probs=160.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
..++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 256 ~~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~ 327 (501)
T PRK10762 256 VRLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 (501)
T ss_pred cEEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHC
Confidence 3688999874 369999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCC---cC-CCCCHHHHhccCCC---------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 692 KTAYVSQTA---WI-QTGSIRENILFGSP---------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 692 ~~ayv~Q~~---~i-~~~Tv~eNIlfg~~---------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
.++|++|++ .+ .+.|++||+.++.. .+....++ ...+-++.+... ....++++.+||||||
T Consensus 328 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LSgGek 401 (501)
T PRK10762 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ-----AVSDFIRLFNIK-TPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHH-----HHHHHHHhcCCC-CCCccCchhhCCHHHH
Confidence 279999996 23 46799999987421 11111010 011112222211 0123567789999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++. .||+|++|++|+++..|+.++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999877665556899999999999876 489999999999999998876
Q ss_pred H
Q 000713 838 L 838 (1335)
Q Consensus 838 l 838 (1335)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 5
No 364
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=1.7e-31 Score=299.11 Aligned_cols=207 Identities=28% Similarity=0.405 Sum_probs=171.6
Q ss_pred cccEEEEeeEEEecCCC--------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe----
Q 000713 625 NRAISIKSASFSWEESS--------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK---- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~--------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~---- 692 (1335)
...++.+|+...|+-.+ ...+++++||++++||.++|||++|||||||-.+|++++++. |+|.++|+
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45688999998886432 134789999999999999999999999999999999999886 99999883
Q ss_pred ------------EEEEecCCc---CCCCCHHHHhccCCCC------ChHHHHH---HHHHhccHHHHhhCCCCCCccccC
Q 000713 693 ------------TAYVSQTAW---IQTGSIRENILFGSPM------DSHQYQE---TLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 693 ------------~ayv~Q~~~---i~~~Tv~eNIlfg~~~------~~~~~~~---~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
+-.|+|+|+ -+..||.+-|.-|... +.++-++ +++..+|++ .-..+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence 578999996 2567999988766322 2333343 344444433 23457
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.++++||||||||+||||++-+|++++|||||||||..++.++.+.+.+.. +.|-+-+++|||+..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 889999999999999999999999999999999999999999998766543 358899999999999875 899999999
Q ss_pred CeEEEecChHHHHhcc
Q 000713 827 GEILRAAPYHQLLASS 842 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~ 842 (1335)
|+|+|+|+.++++++.
T Consensus 503 GkiVE~G~~~~if~~P 518 (534)
T COG4172 503 GKIVEQGPTEAVFANP 518 (534)
T ss_pred CEEeeeCCHHHHhcCC
Confidence 9999999999998764
No 365
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.4e-31 Score=276.27 Aligned_cols=141 Identities=33% Similarity=0.561 Sum_probs=129.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCCCC
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQTG 705 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~~~ 705 (1335)
++++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++| .++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~------- 70 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ------- 70 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-------
Confidence 468999999964 3699999999999999999999999999999999999999999999998 4789888
Q ss_pred CHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 000713 706 SIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDA 785 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~ 785 (1335)
||||||||++||||++++|++++||||+++||+
T Consensus 71 -----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 786 HTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 786 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
.+...+.+.+.+ . ++|+|++||+++.+.. +|++++|++|+
T Consensus 104 ~~~~~l~~~l~~-~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 104 ESIEALEEALKE-Y--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHH-c--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999988875543 2 5799999999999865 79999999985
No 366
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=3.3e-31 Score=331.43 Aligned_cols=201 Identities=24% Similarity=0.374 Sum_probs=162.9
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-c
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-W 701 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-~ 701 (1335)
+..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ ++||++|++ .
T Consensus 322 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 398 (556)
T PRK11819 322 DKVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDA 398 (556)
T ss_pred CeEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhh
Confidence 357999999999963 4699999999999999999999999999999999999999999999966 589999996 4
Q ss_pred C-CCCCHHHHhccCCCCC-----hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 702 I-QTGSIRENILFGSPMD-----SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 702 i-~~~Tv~eNIlfg~~~~-----~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
+ .+.|++||+.++.... ..+.++.++..++..+ ....++.+||||||||++||||++.+|+++|
T Consensus 399 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~qrv~la~al~~~p~lll 468 (556)
T PRK11819 399 LDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG----------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLL 468 (556)
T ss_pred cCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4 4569999998764211 1122233333333111 1245677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC-CeEE-EecChHHHHhc
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD-GEIL-RAAPYHQLLAS 841 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~-G~i~-~~g~~~~l~~~ 841 (1335)
|||||++||+.+.+.+.+.+... . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+.
T Consensus 469 LDEPt~~LD~~~~~~l~~~l~~~--~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 469 LDEPTNDLDVETLRALEEALLEF--P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EcCCCCCCCHHHHHHHHHHHHhC--C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999998755432 3 489999999998865 899999986 7876 57888887654
No 367
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=8.8e-32 Score=296.20 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=147.9
Q ss_pred ceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-EcCeEEEEecCCcCCC-CCHHHHhccCCC---CCh
Q 000713 645 TMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-VYGKTAYVSQTAWIQT-GSIRENILFGSP---MDS 719 (1335)
Q Consensus 645 ~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-v~g~~ayv~Q~~~i~~-~Tv~eNIlfg~~---~~~ 719 (1335)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|....+.|++.+++ .|++||+.+... .+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 68999999999999999999999999999999999999999997 7876555566666654 599999986422 222
Q ss_pred HHHHHHH-HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000713 720 HQYQETL-ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME 798 (1335)
Q Consensus 720 ~~~~~~~-~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~ 798 (1335)
++..+.+ +..++ +.. ...+..+||||||||++||||++.+|+++|||||++++|+.+++.+.+.+.+.
T Consensus 82 ~~~~~~~~~~~~l-------~~~----~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~ 150 (213)
T PRK15177 82 DEFSHFCYQLTQL-------EQC----YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQ 150 (213)
T ss_pred HHHHHHHHHHhCh-------hHH----hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 2222211 11111 111 23456689999999999999999999999999999999999999888765443
Q ss_pred HcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHh
Q 000713 799 ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 799 ~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
.+++|+|++||+++.+. .||++++|++|++++.|+.++..+
T Consensus 151 -~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 151 -LQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred -hhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 34689999999999986 589999999999999999888753
No 368
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=3.3e-31 Score=331.34 Aligned_cols=200 Identities=24% Similarity=0.379 Sum_probs=161.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc-
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW- 701 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~- 701 (1335)
+..++++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ++||++|++.
T Consensus 320 ~~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~ 396 (552)
T TIGR03719 320 DKVIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDA 396 (552)
T ss_pred CeEEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccc
Confidence 357999999999963 4699999999999999999999999999999999999999999999965 5899999863
Q ss_pred C-CCCCHHHHhccCCCC---C--hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 702 I-QTGSIRENILFGSPM---D--SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 702 i-~~~Tv~eNIlfg~~~---~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
+ .+.|++||+.++... . +.+.++.++..++..+ ....++.+||||||||++||||++.+|+++|
T Consensus 397 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lll 466 (552)
T TIGR03719 397 LDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLL 466 (552)
T ss_pred cCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 4 457999999886432 1 1122233333333211 1245677899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC-CeEE-EecChHHHHh
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD-GEIL-RAAPYHQLLA 840 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~-G~i~-~~g~~~~l~~ 840 (1335)
|||||++||+.+.+.+.+.+.+. . .|+|+||||++++.. ||+|++|++ |++. ..|+++++.+
T Consensus 467 LDEPt~~LD~~~~~~l~~~l~~~--~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 467 LDEPTNDLDVETLRALEEALLEF--A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHC--C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 99999999999999998755432 2 489999999999875 899999997 5876 5688876643
No 369
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1e-31 Score=332.93 Aligned_cols=200 Identities=23% Similarity=0.359 Sum_probs=159.3
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++. .+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 267 ~~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 338 (510)
T PRK15439 267 PVLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLAR 338 (510)
T ss_pred ceEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 4699999983 2599999999999999999999999999999999999999999999873
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCC----CC--ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGS----PM--DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRI 761 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~----~~--~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv 761 (1335)
++|+||++ ...+.|+.||+.... .. .....++ ...+-++.+... ......+..+||||||||+
T Consensus 339 ~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 339 GLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA-----VLERYRRALNIK-FNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred CcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHH-----HHHHHHHHcCCC-CCCccCccccCCcHHHHHH
Confidence 79999985 334569999985320 11 1110110 011112222111 0124567789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHH
Q 000713 762 QLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 762 ~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
+||||++.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++|||++++.. ||++++|++|+++..|+.+++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999988766655568999999999999865 8999999999999999887764
No 370
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=4.4e-31 Score=329.38 Aligned_cols=195 Identities=21% Similarity=0.270 Sum_probs=162.7
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcC-C
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWI-Q 703 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i-~ 703 (1335)
...++++|++++|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++-+++|+||++.. +
T Consensus 338 ~~~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~ 413 (590)
T PRK13409 338 ETLVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413 (590)
T ss_pred ceEEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCC
Confidence 346999999999953 35999999999999999999999999999999999999999999988789999999754 5
Q ss_pred CCCHHHHhccCCC-CC-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 704 TGSIRENILFGSP-MD-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 704 ~~Tv~eNIlfg~~-~~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
+.|++||+.++.. +. ....+++++..++.+. ......+|||||||||+||||++++|++|||||||+
T Consensus 414 ~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~-----------~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~ 482 (590)
T PRK13409 414 DGTVEDLLRSITDDLGSSYYKSEIIKPLQLERL-----------LDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA 482 (590)
T ss_pred CCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHH-----------HhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 7799999987532 21 2233455666555432 234667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecCh
Q 000713 782 AVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 782 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~ 835 (1335)
+||+.++..+.+.+.+... .|+|+|+||||++++.. ||++++|++ ++...|+.
T Consensus 483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~~ 537 (590)
T PRK13409 483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGHA 537 (590)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeeec
Confidence 9999999999876665544 48999999999999864 899999965 87777763
No 371
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4.8e-31 Score=333.66 Aligned_cols=199 Identities=23% Similarity=0.405 Sum_probs=162.1
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-- 700 (1335)
+..|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|++
T Consensus 310 ~~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~ 386 (638)
T PRK10636 310 NPLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386 (638)
T ss_pred CceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchh
Confidence 457999999999963 4699999999999999999999999999999999999999999999964 589999975
Q ss_pred cC-CCCCHHHHhcc-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 701 WI-QTGSIRENILF-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 701 ~i-~~~Tv~eNIlf-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
.+ .+.|+.+++.. .......+.++.++.+++..+ ....++.+|||||||||+||||++++|+++||||
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred hCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 23 24588888742 111222333444554444221 1234667899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHH
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
||++||+.+...+.+.+.. . . .|||+||||++++.. ||+|++|++|+++ ..|++++..
T Consensus 457 Pt~~LD~~~~~~l~~~L~~-~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 457 PTNHLDLDMRQALTEALID-F-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCHHHHHHHHHHHHH-c-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 9999999999988875543 3 3 499999999999865 8999999999997 789999874
No 372
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=2.1e-31 Score=310.99 Aligned_cols=171 Identities=29% Similarity=0.382 Sum_probs=141.9
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC-----------eEEEEecCCcCCC-CCHHHHhccCCCC---ChH----H
Q 000713 661 ICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-----------KTAYVSQTAWIQT-GSIRENILFGSPM---DSH----Q 721 (1335)
Q Consensus 661 IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-----------~~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~~~----~ 721 (1335)
|+||||||||||+++|+|+++|++|+|.++| +++|++|++.++. .|++||+.|+... +.. +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999999999999999987 3799999988764 6999999986432 111 2
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL- 800 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~- 800 (1335)
.+++++..++.+ ...+++.+|||||||||+||||++++|+++||||||++||+.+++.+.+.+.+...
T Consensus 81 ~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 81 VLEALRLVQLEE-----------FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred HHHHHHHcCCcc-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 233333333321 23456789999999999999999999999999999999999999999887765544
Q ss_pred CCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhcc
Q 000713 801 SGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 801 ~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~~ 842 (1335)
.|+|+|+||||++++. .||+|++|++|++++.|+++++.+..
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 3899999999999876 48999999999999999999997643
No 373
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=6.5e-31 Score=333.30 Aligned_cols=202 Identities=29% Similarity=0.430 Sum_probs=168.8
Q ss_pred cEEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 627 AISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.++++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 689999999996422 246999999999999999999999999999999999999999999999872
Q ss_pred ----EEEEecCCcCCC-CCHHHHhccCCCC---C-hH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH
Q 000713 693 ----TAYVSQTAWIQT-GSIRENILFGSPM---D-SH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR 760 (1335)
Q Consensus 693 ----~ayv~Q~~~i~~-~Tv~eNIlfg~~~---~-~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR 760 (1335)
++|++|++.+++ .|+.||+.++... + .+ +..+.++.+++.+ .++..+.+||||||||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED-----------RVEYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhcCCcccCCHHHHHH
Confidence 689999998764 6999999864211 1 11 2223333333322 3445667999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecChHHHH
Q 000713 761 IQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAPYHQLL 839 (1335)
Q Consensus 761 v~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~~~~l~ 839 (1335)
++||||++++|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++.+..||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999999876655445689999999999988889999999999999999988774
No 374
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=2.7e-31 Score=328.15 Aligned_cols=195 Identities=27% Similarity=0.437 Sum_probs=156.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC-CCcEEEEcCe-----------
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH-TQGTIQVYGK----------- 692 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~-~~G~i~v~g~----------- 692 (1335)
+..++++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|+
T Consensus 258 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~ 334 (490)
T PRK10938 258 EPRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334 (490)
T ss_pred CceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHH
Confidence 347999999999963 4699999999999999999999999999999999998876 6999998762
Q ss_pred ---EEEEecCCcCC---CCCHHHHhccCCC--------CCh---HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCH
Q 000713 693 ---TAYVSQTAWIQ---TGSIRENILFGSP--------MDS---HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 693 ---~ayv~Q~~~i~---~~Tv~eNIlfg~~--------~~~---~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
++|++|++.++ ..++++++.++.. ... ++.++.++.+++.++ ....++.+|||
T Consensus 335 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSg 404 (490)
T PRK10938 335 KKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSW 404 (490)
T ss_pred HhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCH
Confidence 79999987542 2477777754310 111 123344444443221 12356678999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEccCCCcccc--CCeEEEEeCCeEEEe
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSG-KVVLLVTHQVDFLPA--FDSVLLMSDGEILRA 832 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~-~TvIlvTH~~~~l~~--~D~iivl~~G~i~~~ 832 (1335)
|||||++||||++.+|+++||||||++||+.+++.+.+.+.+...++ .|+|++|||++++.. +|++++|++|+|++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999998776655555 469999999999864 699999999998764
No 375
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.3e-30 Score=330.68 Aligned_cols=197 Identities=25% Similarity=0.411 Sum_probs=160.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCcCC
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAWIQ 703 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~i~ 703 (1335)
..++++|++++|++ .+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ++||++|++. .
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 57999999999953 23689999999999999999999999999999999999999999999876 5899999863 3
Q ss_pred CCCHHHHhcc--C---CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 704 TGSIRENILF--G---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 704 ~~Tv~eNIlf--g---~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
..++.+|... . ....+++.+++++.+++..+. ...++.+||||||||++||||++.+|+++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDE 653 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAKITFKKPHILLLDE 653 (718)
T ss_pred cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3355555331 1 122344556666666664322 124567899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHH
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQL 838 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l 838 (1335)
||++||+.+...+.+.+... + .|+|+||||++++.. ||++++|++|+++ ..|++++.
T Consensus 654 PT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 654 PSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999998887655432 3 499999999999875 8999999999998 67888765
No 376
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=4e-31 Score=326.55 Aligned_cols=201 Identities=20% Similarity=0.334 Sum_probs=158.4
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..|+++|+++.+ +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 249 ~~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 323 (491)
T PRK10982 249 VILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323 (491)
T ss_pred cEEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHC
Confidence 469999999873 35899999999999999999999999999999999999999999999872
Q ss_pred -EEEEecCCc----CCCCCHHHHhccC-----CC----CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 693 -TAYVSQTAW----IQTGSIRENILFG-----SP----MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 693 -~ayv~Q~~~----i~~~Tv~eNIlfg-----~~----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
++|++|++. ..+.|+.+|+.+. .. .+....++ ...+.++.+..++. ....++.+||||||
T Consensus 324 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~-~~~~~~~~LSgGq~ 397 (491)
T PRK10982 324 GFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTP-GHRTQIGSLSGGNQ 397 (491)
T ss_pred CCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCC-CcccccccCCcHHH
Confidence 689999852 3456777774332 11 11111111 11122233322111 24567889999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
||++||||++.+|+|+||||||++||+.+++.+++.+.....+|+|+|++|||++++. .||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 9999999999999999999999999999999999866655557999999999999886 589999999999998776643
No 377
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=1.3e-30 Score=330.54 Aligned_cols=199 Identities=24% Similarity=0.397 Sum_probs=160.5
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~-- 700 (1335)
+..|+++|++++|++ +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++. ++||++|++
T Consensus 317 ~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~ 393 (635)
T PRK11147 317 KIVFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAE 393 (635)
T ss_pred CceEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccc
Confidence 457999999999963 4699999999999999999999999999999999999999999999843 589999985
Q ss_pred cCCCCCHHHHhccCCC-C--C--hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 701 WIQTGSIRENILFGSP-M--D--SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 701 ~i~~~Tv~eNIlfg~~-~--~--~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
...+.|+.||+.++.. . + ..+..+.++.+++..+ ....+..+||||||||++||||++.+|+++|
T Consensus 394 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGekqRl~la~al~~~p~lLl 463 (635)
T PRK11147 394 LDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPK----------RAMTPVKALSGGERNRLLLARLFLKPSNLLI 463 (635)
T ss_pred cCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHH----------HHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3346699999987532 1 1 1122233333333211 1234567899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe-CCeEEE-ecChHHHH
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS-DGEILR-AAPYHQLL 839 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~-~G~i~~-~g~~~~l~ 839 (1335)
|||||++||+.+...+.+.+ ... +.|+|+||||.+++.. ||+|++|+ +|++.. .|+|++..
T Consensus 464 LDEPt~~LD~~~~~~l~~~l-~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 464 LDEPTNDLDVETLELLEELL-DSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred EcCCCCCCCHHHHHHHHHHH-HhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 99999999999988776544 322 4599999999999865 89999998 899865 68898874
No 378
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=6.3e-31 Score=279.47 Aligned_cols=152 Identities=22% Similarity=0.279 Sum_probs=132.5
Q ss_pred EeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-EEEEecCCcCCCCCHHH
Q 000713 631 KSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-TAYVSQTAWIQTGSIRE 709 (1335)
Q Consensus 631 ~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-~ayv~Q~~~i~~~Tv~e 709 (1335)
.|++++|++ +++++| ++++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++|++|++.
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~-------- 71 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYID-------- 71 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCC--------
Confidence 478888853 467888 4999999999999999999999999999999999999999994 799988642
Q ss_pred HhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH
Q 000713 710 NILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTAS 789 (1335)
Q Consensus 710 NIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~ 789 (1335)
||||||||++||||++.+|++++|||||++||+.+++
T Consensus 72 -------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~ 108 (177)
T cd03222 72 -------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL 108 (177)
T ss_pred -------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCC-CEEEEEccCCCccc-cCCeEEEEeCCeEEEe--cChHH
Q 000713 790 SLFNDYVMEALSG-KVVLLVTHQVDFLP-AFDSVLLMSDGEILRA--APYHQ 837 (1335)
Q Consensus 790 ~i~~~~~~~~~~~-~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~--g~~~~ 837 (1335)
.+.+.+.+...++ +|+|++||+++++. .||++++|+++-.+.. |.+..
T Consensus 109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 160 (177)
T cd03222 109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKG 160 (177)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcc
Confidence 9988766555554 89999999999987 4899999998765533 54443
No 379
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1e-30 Score=353.34 Aligned_cols=204 Identities=24% Similarity=0.380 Sum_probs=170.3
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC---CCCcEEEEcCe---------E
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP---HTQGTIQVYGK---------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~---~~~G~i~v~g~---------~ 693 (1335)
.++++|++++++.. +++++|+|+|+++++||+++|+|||||||||||++|+|..+ +++|+|.++|+ +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 58999999999632 23579999999999999999999999999999999999997 68899999983 6
Q ss_pred EEEecCCc-CCCCCHHHHhccCCC------CChH----HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTAW-IQTGSIRENILFGSP------MDSH----QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~~-i~~~Tv~eNIlfg~~------~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|||+|++. +++.||+||+.|+.. ..++ +.+++++..++.+ ..++.+|+.+.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999864 567899999997521 1221 2234444444432 2356788888899999999999
Q ss_pred HHHHHccCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc--ccCCeEEEEeCC-eEEEecChHH
Q 000713 763 LARALYQDAD-IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL--PAFDSVLLMSDG-EILRAAPYHQ 837 (1335)
Q Consensus 763 LARAl~~~~~-ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l--~~~D~iivl~~G-~i~~~g~~~~ 837 (1335)
|||||+.+|+ |++|||||||||+.++.++.+.+.+...+|+|||++|||++.. ..+|++++|++| ++++.|+.++
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 9999999997 9999999999999999999987776666799999999999863 568999999997 9999998754
No 380
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=282.63 Aligned_cols=200 Identities=28% Similarity=0.449 Sum_probs=161.8
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..|+++|+++.|++ +++|+|||++|++||..+|+|||||||||||+.+.|+.+|.+|.+.+.|+
T Consensus 28 ~~~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~el 104 (257)
T COG1119 28 NEPLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFEL 104 (257)
T ss_pred CcceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHH
Confidence 3457999999999964 68999999999999999999999999999999999999999999988763
Q ss_pred ---EEEEecC---CcCCCCCHHHHhccCC---------CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHH
Q 000713 693 ---TAYVSQT---AWIQTGSIRENILFGS---------PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQ 757 (1335)
Q Consensus 693 ---~ayv~Q~---~~i~~~Tv~eNIlfg~---------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQ 757 (1335)
||||+-. -...+.+++|-|+-|. +++++.++++. .+.+.++ .....++.-.+||-||
T Consensus 105 rk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~---~lle~~g-----~~~la~r~~~~LS~Ge 176 (257)
T COG1119 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQ---WLLELLG-----AKHLADRPFGSLSQGE 176 (257)
T ss_pred HHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHH---HHHHHcc-----hhhhccCchhhcCHhH
Confidence 6888753 2334668999887431 33443333221 1222221 1223345667899999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEccCCCccccC-CeEEEEeCCeEEEecC
Q 000713 758 KQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALS--GKVVLLVTHQVDFLPAF-DSVLLMSDGEILRAAP 834 (1335)
Q Consensus 758 kqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~--~~TvIlvTH~~~~l~~~-D~iivl~~G~i~~~g~ 834 (1335)
||||-||||++.+|+++|||||++|||...++.+.+.+.+.... +.++|+|||+.+.++.| ++++.+++|+++.+|.
T Consensus 177 ~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 177 QRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999998877765544 78999999999999876 9999999999998874
No 381
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.7e-30 Score=274.42 Aligned_cols=150 Identities=25% Similarity=0.414 Sum_probs=123.3
Q ss_pred CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------EEEEecCCcCCCCCHHHHhcc
Q 000713 642 SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--------TAYVSQTAWIQTGSIRENILF 713 (1335)
Q Consensus 642 ~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--------~ayv~Q~~~i~~~Tv~eNIlf 713 (1335)
++++|+|+||++++|++++|+|||||||||||+++++ ++|++.++|. ++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhH---------------
Confidence 3578999999999999999999999999999999974 6899988765 233333
Q ss_pred CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHH
Q 000713 714 GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD--ADIYLLDDPFSAVDAHTASSL 791 (1335)
Q Consensus 714 g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~--~~ilLLDEP~saLD~~~~~~i 791 (1335)
.+.++..++ ++. ..++++.+||||||||++||||++.+ |+++||||||++||+...+.+
T Consensus 68 ---------~~~l~~~~L---------~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l 128 (176)
T cd03238 68 ---------LQFLIDVGL---------GYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQL 128 (176)
T ss_pred ---------HHHHHHcCC---------Ccc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHH
Confidence 233333332 111 24567889999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCCeE
Q 000713 792 FNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEI 829 (1335)
Q Consensus 792 ~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i 829 (1335)
.+.+.+...+|+|+|++||+++++..+|++++|++|+.
T Consensus 129 ~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 129 LEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 88766555569999999999999888999999976543
No 382
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.6e-30 Score=293.11 Aligned_cols=187 Identities=23% Similarity=0.273 Sum_probs=146.9
Q ss_pred eeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEE-----------EcC---------
Q 000713 632 SASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQ-----------VYG--------- 691 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~-----------v~g--------- 691 (1335)
|++++|++ .+.+|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|
T Consensus 5 ~~~~~y~~--~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 5 EPVHRYGP--NSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred CcceeecC--cchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 67888963 236899999 4999999999999999999999999999999999995 444
Q ss_pred ------eEEEEecCCcCCCCCHHHHhccCCC-C-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 692 ------KTAYVSQTAWIQTGSIRENILFGSP-M-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 692 ------~~ayv~Q~~~i~~~Tv~eNIlfg~~-~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
.++|++|.+...+.++.+|+.+... . .+++..++++.+++.+ ....++.+||||||||++|
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~G~~qrv~l 150 (255)
T cd03236 82 LLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH-----------VLDRNIDQLSGGELQRVAI 150 (255)
T ss_pred hhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 1478888876655566666654311 1 1233444555544422 2345677999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
|||++.+|+++||||||++||+.+.+.+.+.+.+...+++|+|++||+++++.. ||+|++|+ |++.+.|
T Consensus 151 aral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 151 AAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 999999999999999999999999998887665554568999999999999874 89999995 5565433
No 383
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=4.4e-30 Score=275.79 Aligned_cols=188 Identities=25% Similarity=0.321 Sum_probs=159.6
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecC--CcCCCCCHHHHhccCCC----
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQT--AWIQTGSIRENILFGSP---- 716 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~--~~i~~~Tv~eNIlfg~~---- 716 (1335)
..+|+||||++++||.++|+|+|||||||||+.|.|.++|++|+|.++|++++...- ..-++.|.||||.+-..
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~ 119 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGL 119 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCc
Confidence 468999999999999999999999999999999999999999999999999865543 34457799999975321
Q ss_pred ---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHH
Q 000713 717 ---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFN 793 (1335)
Q Consensus 717 ---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~ 793 (1335)
.-+++++++++-..|.+.+ .....++|-||+.|+++|-|...+|||||+||.++..|+.-.++-.+
T Consensus 120 ~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~ 188 (249)
T COG1134 120 TRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLE 188 (249)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHH
Confidence 1234566666655554433 34567899999999999999999999999999999999999888877
Q ss_pred HHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 794 DYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 794 ~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
.+.+...+++|+|+||||++.+++ ||++++|++|+|...|++++..+.
T Consensus 189 rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 189 RLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 766666788999999999999875 899999999999999999998653
No 384
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.97 E-value=5.4e-30 Score=259.50 Aligned_cols=216 Identities=28% Similarity=0.394 Sum_probs=166.1
Q ss_pred cEEEEeeEEEecCCC------CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--------
Q 000713 627 AISIKSASFSWEESS------SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~------~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------- 692 (1335)
.++++|+++++.... ...+++.+||++++|+..||+|.||||||||.++|.|.++|++|+|.+||.
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 356777777664321 235789999999999999999999999999999999999999999999983
Q ss_pred -----EEEEecCCcC-CC-----CCHHHHhc-cCCCCCh----HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 -----TAYVSQTAWI-QT-----GSIRENIL-FGSPMDS----HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 -----~ayv~Q~~~i-~~-----~Tv~eNIl-fg~~~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
|-.++|+|.- +| |++.|.=+ ....+++ ++..+.++..+|.+|-.. -++..||-|
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan----------~~~~~la~~ 153 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN----------YYPHMLAPG 153 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccc----------cchhhcCch
Confidence 6789999852 23 22222111 1122332 233445555555544322 256789999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecC
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~ 834 (1335)
|||||+|||||+-+|+|++.||.+.+||+..+.++.+..+.... .|-+-|+|+.++..+++ +|+|+||++|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999987775543 48999999999999987 69999999999999999
Q ss_pred hHHHHhcch--HHHHHHHHh
Q 000713 835 YHQLLASSK--EFQELVSAH 852 (1335)
Q Consensus 835 ~~~l~~~~~--~~~~l~~~~ 852 (1335)
..+++.... -...+++.|
T Consensus 234 t~~v~a~P~~~~TkRlieSh 253 (267)
T COG4167 234 TADVLASPLHELTKRLIESH 253 (267)
T ss_pred hhhhhcCCccHHHHHHHHHH
Confidence 999986542 233444444
No 385
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.8e-30 Score=268.24 Aligned_cols=204 Identities=29% Similarity=0.374 Sum_probs=161.7
Q ss_pred EEEEeeEEEecC--CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 628 ISIKSASFSWEE--SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 628 i~i~~~~~~~~~--~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
++++|++..+.+ ..++++|+++|++|++|+++.|+|.||||||||+++|.|.++|++|+|.++|.
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 345555555432 22467999999999999999999999999999999999999999999999984
Q ss_pred EEEEecCCcC---CCCCHHHHhccCCC------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHH
Q 000713 693 TAYVSQTAWI---QTGSIRENILFGSP------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 693 ~ayv~Q~~~i---~~~Tv~eNIlfg~~------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~L 763 (1335)
++-|+|+|-- .+.||.||+..... +....-.+ .+....+.+..++.|.+..++.+..-|||||||-++|
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~--~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNER--RRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHH--HHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence 3678999953 57899999986321 11100000 0111233456677777777788888999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEec
Q 000713 764 ARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEAL-SGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAA 833 (1335)
Q Consensus 764 ARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g 833 (1335)
+.|..+.|+|+||||-|+||||.++..+++.-.+-.. .+-|.++|||+++.. .+-+|.++|++|+|+.+-
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999986555444 467999999999875 456999999999998753
No 386
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=277.92 Aligned_cols=342 Identities=18% Similarity=0.238 Sum_probs=261.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccc---CchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHHHHHHH-H
Q 000713 977 SLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDST---PLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACSNLGVL-A 1052 (1335)
Q Consensus 977 ~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~t---p~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~~l~vi-~ 1052 (1335)
..+++..+..+-+.+--+-+.++....+.|.-+- |..|.+.|=++-++.+-. ..+...+-.++.+....++. .
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~---~~l~~i~P~~~Ei~l~~vi~~~ 79 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILR---WILFNILPTLVEISLVAVILWR 79 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHH---HHHHHhhHHHHHHHHHHHHHHh
Confidence 3455667777888888888899999999998654 455666666666665544 33444444444433333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHhhccccH
Q 000713 1053 VVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLIDTNASPF 1132 (1335)
Q Consensus 1053 ~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld~~~~~~ 1132 (1335)
...||+..+.+..+++|.++.-.-..---..||.-..+-+...+.--+++-+-.|++.|+.|+.+..++...++.+.++.
T Consensus 80 ~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~ 159 (497)
T COG5265 80 VYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAA 159 (497)
T ss_pred hcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHH
Confidence 45788887776666665554333232233456666677777888889999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 000713 1133 FHSFAANEWLIQRLETLSATVISSAAFC-MVLLPPGTFTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQY 1211 (1335)
Q Consensus 1133 ~~~~~~~~Wl~~rl~~l~~~~~~~~~~~-~v~~~~~~~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y 1211 (1335)
.....+--||.+--..+.+.-....... +.....+.++.|..-+.-.|..++...++.+-..+.++-+.....|+....
T Consensus 160 ~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdL 239 (497)
T COG5265 160 IKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDL 239 (497)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHh
Confidence 7777777777765444333222211111 111235678899999999999999999999999999999999999999998
Q ss_pred hcCCCCCCCcccCCCCCCCCC-ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCC
Q 000713 1212 MHVPSEAPEVVEDNRPPPNWP-VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEP 1290 (1335)
Q Consensus 1212 ~~~~~E~~~~~~~~~p~~~WP-~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~ 1290 (1335)
.+.+.|-. +....|+-|| ..|.|.|+||+|.|.|..| +|+|+||++++|+||||||++|+||||+...||||||+
T Consensus 240 l~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~r~-iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~ 315 (497)
T COG5265 240 LDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV 315 (497)
T ss_pred hccchhhc---cCCCCccccccccceEEEEEEEeeccccch-hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC
Confidence 87665532 3334566786 5688999999999999875 99999999999999999999999999999999999999
Q ss_pred CCCeEEECCeecCC------cCCCceeecccccccccHHhh
Q 000713 1291 ARGKILVDGKLAEY------DEPMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1291 ~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIrE~ 1325 (1335)
++|+|.|||.||.. |+.||+||||..||+.||..|
T Consensus 316 ~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yn 356 (497)
T COG5265 316 NSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYN 356 (497)
T ss_pred cCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHH
Confidence 99999999999974 678999999999999999864
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.96 E-value=3.7e-29 Score=290.14 Aligned_cols=206 Identities=25% Similarity=0.402 Sum_probs=143.6
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCCC
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQT 704 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~~ 704 (1335)
...+.++|+++++.+ ...++|..|++.+|+.++|+|+|||||||+|++|.|-..|..-++.+ ....++.-.-.
T Consensus 73 s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~----y~ls~e~~ps~ 145 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF----YLLSREIEPSE 145 (614)
T ss_pred cccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----hhhcccCCCch
Confidence 346999999999964 57999999999999999999999999999999999988886544422 22233221111
Q ss_pred CCHHHHhccCCCCChHHHHHH----HHHhc----------------c---------HHHHhhCCCCCCccccCCCCCCCH
Q 000713 705 GSIRENILFGSPMDSHQYQET----LERCS----------------L---------IKDLELLPYGDNTEIGERGVNLSG 755 (1335)
Q Consensus 705 ~Tv~eNIlfg~~~~~~~~~~~----~~~~~----------------l---------~~dl~~l~~gd~t~ig~~g~~LSG 755 (1335)
.+.-+-+.....-...+++.. ..+|. + .+-+..+.+ +.....++..+|||
T Consensus 146 ~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf-~~~m~~k~~~~~Sg 224 (614)
T KOG0927|consen 146 KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGF-LSEMQDKKVKDLSG 224 (614)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCC-CHhHHHHHhhccCc
Confidence 222222221110001111111 11110 0 000111111 12334567788999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC-EEEEEccCCCcccc-CCeEEEEeCCe-EEEe
Q 000713 756 GQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGK-VVLLVTHQVDFLPA-FDSVLLMSDGE-ILRA 832 (1335)
Q Consensus 756 GQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~-TvIlvTH~~~~l~~-~D~iivl~~G~-i~~~ 832 (1335)
|||.|++|||||..+|+++||||||++||..+..++-+.+.+ .++ ++++++|.-++++. |.+|+.|++++ +.+.
T Consensus 225 GwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k---~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 225 GWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAK---YDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHh---ccCceEEEEecchhhhhhHhhhhheecccceeeec
Confidence 999999999999999999999999999999999888654432 234 89999999999986 79999999999 7789
Q ss_pred cChHHHHhc
Q 000713 833 APYHQLLAS 841 (1335)
Q Consensus 833 g~~~~l~~~ 841 (1335)
|+|+++...
T Consensus 302 Gnydqy~~t 310 (614)
T KOG0927|consen 302 GNYDQYVKT 310 (614)
T ss_pred CCHHHHhhH
Confidence 999988643
No 388
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=6.1e-29 Score=334.62 Aligned_cols=204 Identities=25% Similarity=0.443 Sum_probs=166.4
Q ss_pred cEEEEeeEEEecCC----------CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--CCCcEEEEcCe--
Q 000713 627 AISIKSASFSWEES----------SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--HTQGTIQVYGK-- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~----------~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~~~G~i~v~g~-- 692 (1335)
.+.++|+++..+.. +.+.+|+|+|+++++|++++|+|||||||||||++|+|..+ +.+|+|.++|.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58899999987531 12469999999999999999999999999999999999976 37899999882
Q ss_pred --------EEEEecCCcC-CCCCHHHHhccCC------CCChH----HHHHHHHHhccHHHHhhCCCCCCccccCCC-CC
Q 000713 693 --------TAYVSQTAWI-QTGSIRENILFGS------PMDSH----QYQETLERCSLIKDLELLPYGDNTEIGERG-VN 752 (1335)
Q Consensus 693 --------~ayv~Q~~~i-~~~Tv~eNIlfg~------~~~~~----~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g-~~ 752 (1335)
+|||+|++.+ .+.||+||+.|+. ..+.+ +.+++++..+|.+. .++.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 6999998755 5679999998752 11211 23445555555432 245555443 57
Q ss_pred CCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEeC-CeE
Q 000713 753 LSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMSD-GEI 829 (1335)
Q Consensus 753 LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~~-G~i 829 (1335)
||||||||++|||||+.+|++++|||||||||+.++..+.+.+.+...+|+|||++|||++. ...+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999998777766679999999999984 466899999996 899
Q ss_pred EEecChHH
Q 000713 830 LRAAPYHQ 837 (1335)
Q Consensus 830 ~~~g~~~~ 837 (1335)
++.|+..+
T Consensus 1100 v~~G~~~~ 1107 (1470)
T PLN03140 1100 IYSGPLGR 1107 (1470)
T ss_pred EEECCccc
Confidence 99998754
No 389
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=5.1e-29 Score=261.21 Aligned_cols=142 Identities=42% Similarity=0.654 Sum_probs=126.8
Q ss_pred EEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEE
Q 000713 630 IKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYV 696 (1335)
Q Consensus 630 i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv 696 (1335)
++|+++.|++ +++++++||++++|++++|+|+||||||||+++|.|+++|.+|+|.++|. ++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6889999964 36999999999999999999999999999999999999999999999884 2233
Q ss_pred ecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEE
Q 000713 697 SQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLL 776 (1335)
Q Consensus 697 ~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLL 776 (1335)
+| ||||||||++||||++.+|++++|
T Consensus 79 ~q------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 79 PQ------------------------------------------------------LSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred ee------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33 999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCe
Q 000713 777 DDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGE 828 (1335)
Q Consensus 777 DEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~ 828 (1335)
||||++||+.++..+.+.+.+...+++|++++||++++++. +|++++|++|+
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999998887666544457899999999999987 59999999875
No 390
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.2e-29 Score=245.11 Aligned_cols=184 Identities=28% Similarity=0.415 Sum_probs=151.2
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCC---CcEEEEcCe-----------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHT---QGTIQVYGK----------- 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~---~G~i~v~g~----------- 692 (1335)
.+.++|++..-++ .-.|.|+|++|.+||++-+.||+|||||||++-+.|.+.+. +|++.++++
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 4678899987653 46899999999999999999999999999999999999875 799999873
Q ss_pred EEEEecCCcCCC-CCHHHHhccCCCCCh------HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHH
Q 000713 693 TAYVSQTAWIQT-GSIRENILFGSPMDS------HQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLAR 765 (1335)
Q Consensus 693 ~ayv~Q~~~i~~-~Tv~eNIlfg~~~~~------~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LAR 765 (1335)
+|..+|++|+|+ .+|.+|++|..+.+- .....++++.+|...+.. .+.+||||||.||+|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----------dP~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQ-----------DPATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhc-----------ChhhcCcchHHHHHHHH
Confidence 799999999975 599999999866431 122345555566554443 45689999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCccccCCeEEEE
Q 000713 766 ALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 766 Al~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
+|...|+.+|||||||.||..-+.+.-+.++... ..|..+|+||||.+.++.-.+|+.|
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999988887777666543 4588999999999998855666655
No 391
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=2.1e-28 Score=251.35 Aligned_cols=201 Identities=23% Similarity=0.369 Sum_probs=164.9
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++.++++ -.+|+|+||++.+||+-+|+||||+||||++..|.|-.+|+.|+|.++|.
T Consensus 4 ~iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr 80 (249)
T COG4674 4 IILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80 (249)
T ss_pred ceEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHH
Confidence 46889999999964 57999999999999999999999999999999999999999999999982
Q ss_pred --EEEEecCCcCC-CCCHHHHhccCCCCC---------------hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 693 --TAYVSQTAWIQ-TGSIRENILFGSPMD---------------SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 693 --~ayv~Q~~~i~-~~Tv~eNIlfg~~~~---------------~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
||-=+|.|-+| +.||+||+.....-+ +++.+++++..+|. | +.+....+||
T Consensus 81 ~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~---------~--~~~~~A~~LS 149 (249)
T COG4674 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG---------D--ERDRLAALLS 149 (249)
T ss_pred hccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc---------h--hhhhhhhhhc
Confidence 57789999887 569999997543222 12344444444432 2 1234456899
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEec
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAA 833 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g 833 (1335)
-||||++.|+.-+.++|+++|||||.+|+-.....+.- ++++...++.++++|.||++|+.. +|+|-||+.|++...|
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~ta-eLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EG 228 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEG 228 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHH-HHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecc
Confidence 99999999999999999999999999999544444443 455666778999999999999975 7999999999999999
Q ss_pred ChHHHHhc
Q 000713 834 PYHQLLAS 841 (1335)
Q Consensus 834 ~~~~l~~~ 841 (1335)
+.+++.++
T Consensus 229 sld~v~~d 236 (249)
T COG4674 229 SLDEVQND 236 (249)
T ss_pred cHHHhhcC
Confidence 99998654
No 392
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.95 E-value=9.4e-28 Score=258.49 Aligned_cols=190 Identities=27% Similarity=0.347 Sum_probs=146.3
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE------------EEEe----cCCcCCCCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT------------AYVS----QTAWIQTGS 706 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~------------ayv~----Q~~~i~~~T 706 (1335)
.++.+||||+|++|++++.+|+||+||||+|++|.|.+.|++|.|.++|.+ ++|. |--|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp-- 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP-- 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech--
Confidence 458999999999999999999999999999999999999999999999853 3432 1223222
Q ss_pred HHHHhccC---CCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCC
Q 000713 707 IRENILFG---SPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAV 783 (1335)
Q Consensus 707 v~eNIlfg---~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saL 783 (1335)
+.|-+..- .+.....|++.++.. . +.+. -+..+..+...||-|||.|+.||.||+++|+|++|||||-+|
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l--~---eiLd--l~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgL 187 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFL--T---EILD--LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGL 187 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHH--H---HHhc--chhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCc
Confidence 22222111 123334444433321 1 1111 122345577899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH-HcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHHHHhc
Q 000713 784 DAHTASSLFNDYVME-ALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~-~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
|..++..|.+-+... ..++.||+++||+++-+. -||||++|+.|+++..|+.+++.++
T Consensus 188 DV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 188 DVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred chhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 999999998766544 346899999999999876 5899999999999999999998764
No 393
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=2.6e-27 Score=296.17 Aligned_cols=207 Identities=31% Similarity=0.494 Sum_probs=172.3
Q ss_pred ccEEEEeeEEEecCC--CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC---CCcEEEEcCe--------
Q 000713 626 RAISIKSASFSWEES--SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIQVYGK-------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~--~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~---~~G~i~v~g~-------- 692 (1335)
..+.++|++..-++. ..+.+|+|||.++++||+.||.||+||||||||++|+|-.+. .+|+|.+||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 357788888876554 246899999999999999999999999999999999999874 7999999993
Q ss_pred --EEEEecCCc-CCCCCHHHHhccCCC------CCh----HHHHHHHHHhccHHHHhhCCCCCCccccCC-CCCCCHHHH
Q 000713 693 --TAYVSQTAW-IQTGSIRENILFGSP------MDS----HQYQETLERCSLIKDLELLPYGDNTEIGER-GVNLSGGQK 758 (1335)
Q Consensus 693 --~ayv~Q~~~-i~~~Tv~eNIlfg~~------~~~----~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~-g~~LSGGQk 758 (1335)
.|||.|+.. +.+.||+|++.|... .+. ++++++++..+|. +-.+|.||.. ...+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCccccchh
Confidence 699999876 567899999987532 122 2344455544443 2245677643 357999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~~G~i~~~g~~~ 836 (1335)
+||++|.-+..||.|++|||||||||..++.++.+.+.+.+.+|+|||++=||+.. ....|++++|.+|+++..|+++
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999999888877889999999999975 4668999999999999999998
Q ss_pred HHH
Q 000713 837 QLL 839 (1335)
Q Consensus 837 ~l~ 839 (1335)
++.
T Consensus 257 ~~~ 259 (613)
T KOG0061|consen 257 ELL 259 (613)
T ss_pred HHH
Confidence 764
No 394
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=281.54 Aligned_cols=201 Identities=27% Similarity=0.417 Sum_probs=166.5
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA- 700 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~- 700 (1335)
.+..++++|++++|++. +++++++||.|++|+.+||+||||+||||||+.|+|...|.+|+|.+.- ++||.+|+.
T Consensus 318 g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~ 395 (530)
T COG0488 318 GKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD 395 (530)
T ss_pred CCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh
Confidence 45689999999999753 5799999999999999999999999999999999999999999999865 489999975
Q ss_pred -cCCCCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 701 -WIQTGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 701 -~i~~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
+..+.|+.|++.-..+. .+...+..+..+.+..+-. ..+...||||||.|+.||+.+.++|.+|||||
T Consensus 396 ~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~----------~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDE 465 (530)
T COG0488 396 ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ----------EKPVGVLSGGEKARLLLAKLLLQPPNLLLLDE 465 (530)
T ss_pred hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH----------hCchhhcCHhHHHHHHHHHHhccCCCEEEEcC
Confidence 34566999999865532 3455666666665544332 34566899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe-cChHHHHh
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA-APYHQLLA 840 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~-g~~~~l~~ 840 (1335)
||+.||.++.+.+-+.+. . -.-|||+||||.+|+.. |++|+.+++ ++... |+|++..+
T Consensus 466 PTNhLDi~s~~aLe~aL~-~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~ 525 (530)
T COG0488 466 PTNHLDIESLEALEEALL-D--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLE 525 (530)
T ss_pred CCccCCHHHHHHHHHHHH-h--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHH
Confidence 999999999877654332 2 25699999999999986 699999999 76655 88888754
No 395
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.94 E-value=7.7e-27 Score=259.27 Aligned_cols=182 Identities=24% Similarity=0.316 Sum_probs=122.2
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHH-HHHhc--------------------CCCCCCcEEEEcC-eEEEEecCC
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLL-AAILG--------------------EVPHTQGTIQVYG-KTAYVSQTA 700 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL-~~ilG--------------------~~~~~~G~i~v~g-~~ayv~Q~~ 700 (1335)
.++|+|+||+|++||+++|+|+||||||||+ ..+.+ ...|..++ +.| ..++..|++
T Consensus 8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 85 (226)
T cd03270 8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDS--IEGLSPAIAIDQK 85 (226)
T ss_pred hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccc--ccCCCceEEecCC
Confidence 5799999999999999999999999999996 33321 01111111 112 123333433
Q ss_pred c-CC--CCCHH---HHhcc-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC--
Q 000713 701 W-IQ--TGSIR---ENILF-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA-- 771 (1335)
Q Consensus 701 ~-i~--~~Tv~---eNIlf-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~-- 771 (1335)
. .. ..++. +...+ ...+......+. .+.++.+...+ ....+++.+||||||||++||||++.+|
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~laral~~~p~~ 158 (226)
T cd03270 86 TTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDVGLGY-LTLSRSAPTLSGGEAQRIRLATQIGSGLTG 158 (226)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHCCCCc-ccccCccCcCCHHHHHHHHHHHHHHhCCCC
Confidence 2 11 11322 11111 100000000000 11122222211 1245678899999999999999999998
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE------eCCeEEEec
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM------SDGEILRAA 833 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl------~~G~i~~~g 833 (1335)
+++||||||++||+.+.+.+.+.+.+...+|.|+|++||+++++..||+|++| ++|+|+++|
T Consensus 159 ~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 159 VLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 59999999999999999999987766555789999999999988889999999 999999876
No 396
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=243.60 Aligned_cols=201 Identities=25% Similarity=0.338 Sum_probs=161.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC--CCCCCcEEEEcCe------------
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE--VPHTQGTIQVYGK------------ 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~--~~~~~G~i~v~g~------------ 692 (1335)
.++++|++.+-++. +++|+++||+|++||+.+|.||||||||||.++|+|. +++++|+|.++|.
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 58999999988642 4899999999999999999999999999999999997 4789999999994
Q ss_pred --EEEEecCCcCCCC-CHHHHhccCCC----C---ChH---HHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 --TAYVSQTAWIQTG-SIRENILFGSP----M---DSH---QYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 --~ayv~Q~~~i~~~-Tv~eNIlfg~~----~---~~~---~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
+...+|.|.-..+ |+.+-+.-+.. . ..+ +.++.++..++.+++. +..++ ..+|||+|+
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHH
Confidence 4688999875554 88887764211 1 112 2333344444444221 11122 259999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC--CeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF--DSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~--D~iivl~~G~i~~~g~~~~ 837 (1335)
|..|+.+++.+|++.+||||=||||...-+.+-+-+-....+|.+++++||.-+.+.+. |+|.+|-+|+|+.+|.+ |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 99999999999999999999999999998877766556667799999999999998875 99999999999999998 6
Q ss_pred HH
Q 000713 838 LL 839 (1335)
Q Consensus 838 l~ 839 (1335)
+.
T Consensus 231 l~ 232 (251)
T COG0396 231 LA 232 (251)
T ss_pred HH
Confidence 54
No 397
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=5.1e-27 Score=236.15 Aligned_cols=205 Identities=25% Similarity=0.412 Sum_probs=160.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG-------------- 691 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g-------------- 691 (1335)
+.++++++++.|++ ..-.+|+||++.|||..+|+|++||||||||++|.|-+.|+.|+|....
T Consensus 5 PLL~V~~lsk~Yg~---~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa 81 (258)
T COG4107 5 PLLSVSGLSKLYGP---GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81 (258)
T ss_pred cceeehhhhhhhCC---CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence 46889999999975 3568999999999999999999999999999999999999999998753
Q ss_pred --------eEEEEecCCcC---CCCCHHHHh----c-cCCCCChHHHHHHHH-HhccHHHHhhCCCCCCccccCCCCCCC
Q 000713 692 --------KTAYVSQTAWI---QTGSIRENI----L-FGSPMDSHQYQETLE-RCSLIKDLELLPYGDNTEIGERGVNLS 754 (1335)
Q Consensus 692 --------~~ayv~Q~~~i---~~~Tv~eNI----l-fg~~~~~~~~~~~~~-~~~l~~dl~~l~~gd~t~ig~~g~~LS 754 (1335)
..|+|-|+|-- ..-+.-.|| + -|. ..|-+.-. +....++.+. |.+.|++.+.++|
T Consensus 82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~----RHYG~iR~~a~~WL~~VEI----~~~RiDD~PrtFS 153 (258)
T COG4107 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA----RHYGNIRAEAQDWLEEVEI----DLDRIDDLPRTFS 153 (258)
T ss_pred HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhh----hhhhhHHHHHHHHHHhccc----CcccccCcccccc
Confidence 14899999842 122223333 2 121 11222111 1111222222 4567788999999
Q ss_pred HHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEe
Q 000713 755 GGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRA 832 (1335)
Q Consensus 755 GGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~ 832 (1335)
||++||++|||-|...|+++++||||.|||..++..+.+.+.... .-+-.+++||||+..... +|+.++|++|+++++
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 999999999999999999999999999999999999987554332 237899999999998875 799999999999999
Q ss_pred cChHHHHhc
Q 000713 833 APYHQLLAS 841 (1335)
Q Consensus 833 g~~~~l~~~ 841 (1335)
|-.+.++..
T Consensus 234 GLTDrvLDD 242 (258)
T COG4107 234 GLTDRVLDD 242 (258)
T ss_pred ccccccccC
Confidence 988887754
No 398
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4e-26 Score=234.75 Aligned_cols=176 Identities=28% Similarity=0.402 Sum_probs=139.2
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-E-----------EE
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-T-----------AY 695 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-~-----------ay 695 (1335)
++.+|++..-+ +...+.++||++.+||.+.|.|||||||||||++|.|+++|++|+|.++|. + -|
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 45567776553 357999999999999999999999999999999999999999999999863 1 24
Q ss_pred EecCCcC-CCCCHHHHhccCCCC----ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC
Q 000713 696 VSQTAWI-QTGSIRENILFGSPM----DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD 770 (1335)
Q Consensus 696 v~Q~~~i-~~~Tv~eNIlfg~~~----~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~ 770 (1335)
..-++-+ ...|+.||+.|-.++ +.+...++++..+|.. ++.+ ...+||-|||+||+|||-..+.
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g-~~dl----------p~~~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAG-LEDL----------PVGQLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCccc-cccc----------chhhcchhHHHHHHHHHHHcCC
Confidence 4444444 456999999985442 3456667777776642 2222 3457999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc
Q 000713 771 ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA 817 (1335)
Q Consensus 771 ~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~ 817 (1335)
+++.|||||+++||.+....+-..+.....+|-.||++||+.-.++.
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999998765544444556789999999999866543
No 399
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=6.9e-26 Score=254.53 Aligned_cols=182 Identities=23% Similarity=0.361 Sum_probs=129.7
Q ss_pred CceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHh--------cCC--CCCCcEEEEc----CeEEEEecCCc--------
Q 000713 644 PTMRNISLEVRPGQKVAICGEVGSGKSTLLAAIL--------GEV--PHTQGTIQVY----GKTAYVSQTAW-------- 701 (1335)
Q Consensus 644 ~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~il--------G~~--~~~~G~i~v~----g~~ayv~Q~~~-------- 701 (1335)
..|+|+|++||.|.+++|+|++|||||||++.++ +.. .|..++.... .++-+|.|.|.
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999663 110 1222211110 12334444331
Q ss_pred ---------------------------------------CCCCCHHHHhccCCCCCh-HHHHHHHHHhccHHHHhhCCCC
Q 000713 702 ---------------------------------------IQTGSIRENILFGSPMDS-HQYQETLERCSLIKDLELLPYG 741 (1335)
Q Consensus 702 ---------------------------------------i~~~Tv~eNIlfg~~~~~-~~~~~~~~~~~l~~dl~~l~~g 741 (1335)
+.+.|+.||+.|...+.. .+..+. ++.+..+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~---------L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT---------LCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHH---------HHHcCCc
Confidence 234455555544322111 111112 2222222
Q ss_pred CCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccC
Q 000713 742 DNTEIGERGVNLSGGQKQRIQLARALYQD---ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAF 818 (1335)
Q Consensus 742 d~t~ig~~g~~LSGGQkqRv~LARAl~~~---~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~ 818 (1335)
+. ..+++..+||||||||++||||+.++ |+++||||||++||++..+.+.+.+.+...+|.|+|++||+++++..|
T Consensus 160 ~l-~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 160 YI-KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred hh-hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 11 25678889999999999999999996 799999999999999999999886665556789999999999999889
Q ss_pred CeEEEE------eCCeEEEecCh
Q 000713 819 DSVLLM------SDGEILRAAPY 835 (1335)
Q Consensus 819 D~iivl------~~G~i~~~g~~ 835 (1335)
|++++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999874
No 400
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.93 E-value=2.9e-23 Score=240.26 Aligned_cols=348 Identities=20% Similarity=0.180 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHH
Q 000713 964 LIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTN 1043 (1335)
Q Consensus 964 ~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~ 1043 (1335)
.+-++..++-.+|+..+...|.+.=.+++...+...+++|..-=-..+....+ +|++.+...+...--..+.-.=-
T Consensus 71 ~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~L----rDL~qvR~Fltg~g~~A~fDaPW 146 (580)
T COG4618 71 GLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQPL----RDLDQVRQFLTGTGLTAFFDAPW 146 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccch----hhHHHHHHHHcCCCcchhcCCch
Confidence 34455667788899999999999999999999999988877643333333443 36666665443311111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHH---
Q 000713 1044 ACSNLGVLAVVTWQVLFVSIPV----IFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDR--- 1116 (1335)
Q Consensus 1044 ~~~~l~vi~~~~~~~~~~~ipl----~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~--- 1116 (1335)
.-.-+++++...||+.++.+.- +.+.+.-++.-.+..+ .-++..+.-.++..-+..++.+|+|.|+..+
T Consensus 147 ~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~----eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~ 222 (580)
T COG4618 147 MPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLK----EASEASIRANQLADATLRNAEVIEAMGMLGNLAK 222 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH----HHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHH
Confidence 1223455666677765543322 2222333332222222 2334445556788889999999999998664
Q ss_pred -HHHHHHHHHhhccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHH-HHHHHHHHHHHHHHHHH
Q 000713 1117 -FFAKNLDLIDTNASPFFHSFAANEWL-IQRLETLSATVISSAAFCMVLLPPGTFTPGFIGM-ALSYGLSLNSSLVMSIQ 1193 (1335)
Q Consensus 1117 -f~~~~~~~ld~~~~~~~~~~~~~~Wl-~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Gl-alsy~l~l~~~l~~~v~ 1193 (1335)
..+.+.+.++.+.++...+.....-- .+|+-+- +.+. ++.+.+..++.++||.+-. ++..+ ..-..+-..|.
T Consensus 223 rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQ-s~iL---g~GA~Lvi~ge~t~G~mIA~SIl~g-RaLaPid~aI~ 297 (580)
T COG4618 223 RWGRFNAAYLSAQERASDRNGAFGALSRALRMALQ-SAVL---GLGAWLVIKGEITPGMMIAGSILSG-RALAPIDLAIA 297 (580)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHH---hcceeeEEcCcCCcchhhHHHHHhh-hhhccHHHHHH
Confidence 44556666666666554432211110 1222221 1111 2223333467788775422 22111 22235667889
Q ss_pred HHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCC
Q 000713 1194 NQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRT 1273 (1335)
Q Consensus 1194 ~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRT 1273 (1335)
.|.+.-....|-.|+.+..+..+++....+ -|. .+|.+..+++++-=++...|+|+||||+++|||-+|||||+
T Consensus 298 ~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~--LP~----P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 298 NWKQFVAARQSYKRLNELLAELPAAAERMP--LPA----PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccccCCCC--CCC----CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCC
Confidence 999999999999999999875444322111 111 36999999999965555668999999999999999999999
Q ss_pred CCcHHHHHHHHhhccCCCCCeEEECCeecCCc------CCCceeecccccccccHHhhHHhhh
Q 000713 1274 GSGKTTLRGALFRLIEPARGKILVDGKLAEYD------EPMELMKREGSLFGQLVKEYWSHLH 1330 (1335)
Q Consensus 1274 GSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~------~~i~lV~Qep~LFsGTIrE~~~~~~ 1330 (1335)
|||||||..+|.+...|.+|+|.+||-|+.+- +.+|+.|||.-||+|||+||.....
T Consensus 372 gSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~ 434 (580)
T COG4618 372 GSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFG 434 (580)
T ss_pred CccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhcc
Confidence 99999999999999999999999999999874 4689999999999999999965544
No 401
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=9.1e-25 Score=290.62 Aligned_cols=94 Identities=27% Similarity=0.479 Sum_probs=85.0
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALY---QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~---~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
.++...+||||||||++||||++ .+|++|||||||++||++..+.+++.+.+...+|+|+|+|||+++.+..+|+|+
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi 882 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVL 882 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEE
Confidence 46788899999999999999998 699999999999999999999999877666667999999999999997789999
Q ss_pred EEe------CCeEEEecChHHHH
Q 000713 823 LMS------DGEILRAAPYHQLL 839 (1335)
Q Consensus 823 vl~------~G~i~~~g~~~~l~ 839 (1335)
+|+ +|+++..|+++++.
T Consensus 883 ~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 883 ELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred EEccCCCCCCCEEEEeCCHHHHH
Confidence 996 78999999988764
No 402
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.93 E-value=6.2e-26 Score=231.99 Aligned_cols=123 Identities=44% Similarity=0.724 Sum_probs=107.4
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------EEEEecCCcCCCC-CHHHHh
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK-------------TAYVSQTAWIQTG-SIRENI 711 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~-------------~ayv~Q~~~i~~~-Tv~eNI 711 (1335)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.++|. ++|++|++.+++. |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999873 7999999877654 79999
Q ss_pred ccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCC
Q 000713 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFS 781 (1335)
Q Consensus 712 lfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~s 781 (1335)
...++++++++.+++.. ..++.++.++.+||||||||++||||++++|+++||||||+
T Consensus 80 -----~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -----ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -----HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -----ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 33456677777766543 23456778889999999999999999999999999999996
No 403
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.92 E-value=3e-21 Score=222.54 Aligned_cols=459 Identities=17% Similarity=0.208 Sum_probs=271.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 358 FLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIYRKQLRLSNAARLMHSGG---EIMNYVTVDAYRIGEFPFWFHQIWTT 434 (1335)
Q Consensus 358 ~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy~K~L~ls~~~~~~~s~G---~IvNlms~D~~ri~~~~~~~h~~w~~ 434 (1335)
++..+-.++.+..-.|.-.++++-+|+-|+.-.|++=+.-...-+-....| ..-|-++.|+..+.+....+..=.+-
T Consensus 164 ~liaiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtK 243 (728)
T KOG0064|consen 164 FLIAIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTK 243 (728)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhh
Confidence 344444556666667788899999999999999999885332111111122 23466899999998876655444444
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHH
Q 000713 435 S-VQLCIALIILFHAVGLATIAALVVITITVLCNTPLAKLQ----HKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWET 509 (1335)
Q Consensus 435 p-lqi~lal~lL~~~lG~a~l~gl~v~vl~~~~~~~~~~~~----~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~ 509 (1335)
| +.+++.-+-|-...+-....|.....+.+.+...+-|.. .+...+-...+..--.+=+.+++|-..|-+|+-.+
T Consensus 244 P~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~Ghk 323 (728)
T KOG0064|consen 244 PVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHK 323 (728)
T ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccH
Confidence 5 355555555544332211111111112222222222222 22222222222222345677889999999999877
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhHH---HhHHHHH--HHHH-HHHHHHHhcCc--c-----cHHHHHHHH-
Q 000713 510 HFKNAIEILRNVEYKWL----SAVQLRKAYNGFL---FWSSPVL--VSTA-TFGACYFLNVP--L-----YASNVFTFV- 571 (1335)
Q Consensus 510 ~f~~~I~~~R~~El~~l----~~~~~~~a~~~~~---~~~~p~l--v~~~-tF~~~~l~~~~--L-----t~~~vFt~l- 571 (1335)
.-.+++++.-+.=...+ ++..+...+-.|+ .|+..-+ +++- .++++ ..+++ + +-...|++-
T Consensus 324 vE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~-~s~~~~~~~e~~~srt~~f~t~r 402 (728)
T KOG0064|consen 324 VELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTL-ASEGTLQLSEEGNSRTKEFITNR 402 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeeccc-CCCCcccccccchhHHHHHHHHH
Confidence 66666655333211111 1111111111111 1111000 0000 00111 01111 1 112334332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCC-----cccc-----cc--------cCCCC----CCcccE
Q 000713 572 ATLRLVQDPIRIIPDVIGVFIQANVAFSRIVNFLEA-PELQ-----SMNI-----RQ--------KGNIE----NVNRAI 628 (1335)
Q Consensus 572 alf~~L~~pl~~lp~~i~~~~qa~vS~~RI~~fL~~-~e~~-----~~~~-----~~--------~~~~~----~~~~~i 628 (1335)
-++-...+.+..+-..+..+.|-..--.|+.+-++- ++.. ...+ .+ .+-.. .....|
T Consensus 403 ~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI 482 (728)
T KOG0064|consen 403 RLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGI 482 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccce
Confidence 333334455666666777777777777788754431 1100 0000 00 00000 012347
Q ss_pred EEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--CeEEEEecCCcCCCCC
Q 000713 629 SIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--GKTAYVSQTAWIQTGS 706 (1335)
Q Consensus 629 ~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g~~ayv~Q~~~i~~~T 706 (1335)
.++|+-.--|. ...+...+||+|++|....|+||||||||||.+.|.|+.|...|...+. .++-|+||.|..--+|
T Consensus 483 ~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 483 ILENIPVITPA--GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred EEecCceeccC--cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 78888776554 2457899999999999999999999999999999999999999988774 4689999999999999
Q ss_pred HHHHhccCCC--------CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeC
Q 000713 707 IRENILFGSP--------MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDD 778 (1335)
Q Consensus 707 v~eNIlfg~~--------~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDE 778 (1335)
.||.|.+... +.+....+.++...|+.-++. ..|.+ .+-+--..||||+|||+++||-.|++|+.-+|||
T Consensus 561 lRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr-~~g~d-a~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQR-EGGWD-AVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred ccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHh-ccChh-hhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 9999998643 333445566666666544433 22222 1223334699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEE
Q 000713 779 PFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLM 824 (1335)
Q Consensus 779 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl 824 (1335)
.|||+-+++...+|+... ..|-+.|-|||++..-+.-.+.+-.
T Consensus 639 cTsAvsidvE~~i~~~ak---~~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAK---DAGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHH---hcCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999998653 2488999999999877654444433
No 404
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=2.4e-25 Score=290.06 Aligned_cols=207 Identities=24% Similarity=0.392 Sum_probs=171.0
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
.++.++|+++.|+.... +.+++++.|++||+.++.|+|||||||++++|.|+.+|++|++.++|.
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 57899999999976432 899999999999999999999999999999999999999999999762
Q ss_pred -EEEEecCCcC-CCCCHHHHhccCCC---CChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH
Q 000713 693 -TAYVSQTAWI-QTGSIRENILFGSP---MDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL 767 (1335)
Q Consensus 693 -~ayv~Q~~~i-~~~Tv~eNIlfg~~---~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl 767 (1335)
+|||||.--+ ...|.||++.+... +.+...+++++ .+.+.++..++++ ....++|||||+|+++|-|+
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~--~ll~~~~L~~~~~-----~~~~~ySgG~kRkLs~aial 713 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIE--KLLRLVGLGPYAN-----KQVRTYSGGNKRRLSFAIAL 713 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHH--HHHHHcCChhhhc-----cchhhCCCcchhhHHHHHHH
Confidence 7999997544 57799999976422 22222222221 1223333344444 34568999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChHHHHhc
Q 000713 768 YQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 768 ~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+|++++||||++|+||..++++++.+.+..++|+.+|++||.+++.+. |||+.+|.+|++...|+++++.++
T Consensus 714 ig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 714 IGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 99999999999999999999999998766666667799999999999976 899999999999999999999754
No 405
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=5.2e-23 Score=260.66 Aligned_cols=191 Identities=27% Similarity=0.419 Sum_probs=153.8
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCC---CCcEEEEcC----------eEEEEecCCc-CCCCCHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPH---TQGTIQVYG----------KTAYVSQTAW-IQTGSIR 708 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~---~~G~i~v~g----------~~ayv~Q~~~-i~~~Tv~ 708 (1335)
..+|+|++.-+++|+.+.+.||.||||||||+++.|..+. ..|+|..+| .++|++|+.. +...|||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 4689999999999999999999999999999999998764 356888887 3799999765 5678999
Q ss_pred HHhccCC-------CCC---hHHHH-----HHHHHhccHHHHhhCCCCCCccccCCCC-CCCHHHHHHHHHHHHHccCCC
Q 000713 709 ENILFGS-------PMD---SHQYQ-----ETLERCSLIKDLELLPYGDNTEIGERGV-NLSGGQKQRIQLARALYQDAD 772 (1335)
Q Consensus 709 eNIlfg~-------~~~---~~~~~-----~~~~~~~l~~dl~~l~~gd~t~ig~~g~-~LSGGQkqRv~LARAl~~~~~ 772 (1335)
|-+.|.. .+| +..|. .+++..+ +.+..+|.+|.... ..|||||+||++|-++..++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilG-------L~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILG-------LDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhC-------chhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 9998842 222 12222 1222222 34455677876544 699999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCc--cccCCeEEEEeCCeEEEecChHHHHh
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDF--LPAFDSVLLMSDGEILRAAPYHQLLA 840 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~--l~~~D~iivl~~G~i~~~g~~~~l~~ 840 (1335)
++..||++.|||..++-++.+.+.+.. ..+.|.++.-||... ....|.|++|.+|+++.+|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 999999999999999998887665443 458899999998864 45679999999999999999998863
No 406
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.4e-24 Score=247.97 Aligned_cols=192 Identities=26% Similarity=0.443 Sum_probs=135.0
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc-------CeEEEEe
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY-------GKTAYVS 697 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~-------g~~ayv~ 697 (1335)
...|.+.|.+.+|+. +..|.+-++++.+|..+++||+||+||||||++|.. |.|..- |..-..-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~ 148 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL 148 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH
Confidence 346888899999963 679999999999999999999999999999999997 333221 1111111
Q ss_pred cCCcCCCCCHHHHhccCC-CC----C-hHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCC
Q 000713 698 QTAWIQTGSIRENILFGS-PM----D-SHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDA 771 (1335)
Q Consensus 698 Q~~~i~~~Tv~eNIlfg~-~~----~-~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~ 771 (1335)
|+- +...+-+...+... .. + ++-|.+.+...+..++....| ..+||||-|-|++||||+..+|
T Consensus 149 ~~~-l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~p----------t~slSGGWrMrlaLARAlf~~p 217 (582)
T KOG0062|consen 149 QSV-LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQP----------TKSLSGGWRMRLALARALFAKP 217 (582)
T ss_pred hhh-hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhcc----------ccccCcchhhHHHHHHHHhcCC
Confidence 211 12223333333221 11 1 122344555555555555444 3479999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE-EEecChHHHH
Q 000713 772 DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI-LRAAPYHQLL 839 (1335)
Q Consensus 772 ~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i-~~~g~~~~l~ 839 (1335)
|||||||||+.||.....++-+.+ ... +.|+|+||||-.||.. |..|+..++-++ .+.|++++..
T Consensus 218 DlLLLDEPTNhLDv~av~WLe~yL-~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv 284 (582)
T KOG0062|consen 218 DLLLLDEPTNHLDVVAVAWLENYL-QTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFV 284 (582)
T ss_pred CEEeecCCcccchhHHHHHHHHHH-hhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence 999999999999999998886543 222 3899999999999986 688888877665 3456555543
No 407
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.2e-24 Score=236.51 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=120.6
Q ss_pred eeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCc---------EEEEcC----------eEEEEecCCcCCCCCH
Q 000713 647 RNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQG---------TIQVYG----------KTAYVSQTAWIQTGSI 707 (1335)
Q Consensus 647 ~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G---------~i~v~g----------~~ayv~Q~~~i~~~Tv 707 (1335)
+++++++++| +++|+||||||||||+++|.|.+++..| ++.+.| +++|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999999876533 344433 579999999877
Q ss_pred HHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q 000713 708 RENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY----QDADIYLLDDPFSAV 783 (1335)
Q Consensus 708 ~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~ilLLDEP~saL 783 (1335)
|+.. ..++.+++++. +. ...+++.+||||||||++||||+. ++|++++||||+++|
T Consensus 89 -----~~~~-~~~~~~~~l~~----------~~----~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~L 148 (197)
T cd03278 89 -----YSII-SQGDVSEIIEA----------PG----KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAAL 148 (197)
T ss_pred -----eeEE-ehhhHHHHHhC----------CC----ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccC
Confidence 2211 12233333333 11 123567789999999999999986 577999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 784 DAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 784 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|+.....+.+.+.+ ..++.|+|++||+++.+..+|+++.|..
T Consensus 149 D~~~~~~l~~~l~~-~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 149 DDANVERFARLLKE-FSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred CHHHHHHHHHHHHH-hccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999875544 3457899999999998888999999853
No 408
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-25 Score=221.95 Aligned_cols=190 Identities=29% Similarity=0.405 Sum_probs=143.9
Q ss_pred cEEEEeeEEEecC----CCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--C---------
Q 000713 627 AISIKSASFSWEE----SSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--G--------- 691 (1335)
Q Consensus 627 ~i~i~~~~~~~~~----~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g--------- 691 (1335)
.+.++|+++++.- .-.-|+++|+||+++.||++++-||+||||||||++|.|-+.|++|+|.+. |
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4677787776631 112479999999999999999999999999999999999999999999884 2
Q ss_pred ----------eEEEEecCC-cCCCCCHHHHhc-----cCCCCCh--HHHHHHHHHhccHHHHhhCCCCCCccccCCCCCC
Q 000713 692 ----------KTAYVSQTA-WIQTGSIRENIL-----FGSPMDS--HQYQETLERCSLIKDLELLPYGDNTEIGERGVNL 753 (1335)
Q Consensus 692 ----------~~ayv~Q~~-~i~~~Tv~eNIl-----fg~~~~~--~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~L 753 (1335)
.+|||+|-- .++.-+-.|-+. -|-+.+. .+....+.+..+.+.+-.+ .+.++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~L----------aPaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSL----------APATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcC----------CCccc
Confidence 369999963 233333333332 2332221 1223334444444444433 35689
Q ss_pred CHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 754 SGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 754 SGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
|||+||||.|||+++.|-+|+||||||++||+.+++.+.+.+.....+|..+|=+-||-+.-.. |||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999998887666667789999999999877554 699887753
No 409
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.90 E-value=5.6e-21 Score=214.20 Aligned_cols=349 Identities=19% Similarity=0.260 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHH
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIF 1036 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~ 1036 (1335)
.++--|.++.....+...+.......+|.+.-.+++.+..++++.+|+.-+++-..+|++.++.+|+..|.. --..+-.
T Consensus 49 ~~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf-~~s~lp~ 127 (546)
T COG4615 49 LVLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISF-AFSRLPE 127 (546)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceee-hHhhhHH
Confidence 344445555555556666777788899999999999999999999999999999999999999999999983 2333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcc--ccchHHHHHHHHHcchHHHHhcccH
Q 000713 1037 AVGATTNACSNLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGT--TKSLVANHLAESIAGAMTIRAFEEE 1114 (1335)
Q Consensus 1037 ~~~~~~~~~~~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~--~rSpi~s~f~Etl~G~~tIRAf~~e 1114 (1335)
+.++.+-.+++.+-.++.+|+++.+++..+++.++.+ |+..+|-.|+.+.. +...+++|++-.++|.+-.+--+..
T Consensus 128 ~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~--~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R 205 (546)
T COG4615 128 LVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGG--FVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRER 205 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHH
Confidence 7788888899999999999998876665555444333 22223333333222 3456899999999999988776544
Q ss_pred HHHHHHHHH------HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH---HH
Q 000713 1115 DRFFAKNLD------LIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGTFTPGFIGMALSYGLS---LN 1185 (1335)
Q Consensus 1115 ~~f~~~~~~------~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~~~~g~~Glalsy~l~---l~ 1185 (1335)
.+....+.- .-++..+.......++.|-.+-+=.+.++++. +.+.+ + ..+.. .++++++. +-
T Consensus 206 ~~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~-----lal~~-~-w~st~--~a~tivlvlLflr 276 (546)
T COG4615 206 AEYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFW-----LALSL-G-WASTN--VAATIVLVLLFLR 276 (546)
T ss_pred HHHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHhh-c-cchhh--HHHHHHHHHHHHh
Confidence 433322211 11111122222224455544322111111111 11110 1 11111 23333333 34
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCCCCcccCCCCCCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCc
Q 000713 1186 SSLVMSIQNQCTLANYIISVERLNQYMHVPSEAPEVVEDNRPPPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGH 1265 (1335)
Q Consensus 1186 ~~l~~~v~~~~~le~~~~sveRi~~y~~~~~E~~~~~~~~~p~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~Ge 1265 (1335)
+.+..++-....+-+.-+|..||.++..-|..+. -....+-|+| -.||++||.+.|.++. .=+.-||++|+.||
T Consensus 277 ~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGe 350 (546)
T COG4615 277 TPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGE 350 (546)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCc
Confidence 6777888888888889999999998865322221 1122233445 4699999999998764 35677999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCceeecccccccccHH
Q 000713 1266 KIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMELMKREGSLFGQLVK 1323 (1335)
Q Consensus 1266 kVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~lV~Qep~LFsGTIr 1323 (1335)
.|=|+|.+||||||++++|.|++.|++|+|+.||.+++. |+.++-|.-|-.||..++-
T Consensus 351 lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~ 414 (546)
T COG4615 351 LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG 414 (546)
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC
Confidence 999999999999999999999999999999999999985 4556777888899987764
No 410
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.89 E-value=1e-22 Score=222.67 Aligned_cols=154 Identities=23% Similarity=0.292 Sum_probs=121.8
Q ss_pred eeeEeeCCcEEEEEcCCCCCHHHHHHHHh----cCCCCCCcEEEEc----------CeEEEEecCC-c----C-CCCCHH
Q 000713 649 ISLEVRPGQKVAICGEVGSGKSTLLAAIL----GEVPHTQGTIQVY----------GKTAYVSQTA-W----I-QTGSIR 708 (1335)
Q Consensus 649 isl~i~~G~~v~IvG~~GsGKSTLL~~il----G~~~~~~G~i~v~----------g~~ayv~Q~~-~----i-~~~Tv~ 708 (1335)
.++++.+| +++|+||||||||||+.+|. |..+|.+|.+..+ ..+++++|++ + + .+.|+.
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 44667777 99999999999999999994 9999988765421 2578999987 2 1 134999
Q ss_pred HHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHH------HHHHHHHccCCCEEEEeCCCCC
Q 000713 709 ENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQR------IQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 709 eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqR------v~LARAl~~~~~ilLLDEP~sa 782 (1335)
||+.++. +++.++.+ .+.+.+||+||||| ++||||+..+|++++||||+++
T Consensus 95 ~~~~~~~---~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~ 151 (204)
T cd03240 95 ENVIFCH---QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTN 151 (204)
T ss_pred hceeeec---hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccc
Confidence 9998752 11111111 35667899999996 7899999999999999999999
Q ss_pred CCHHHHH-HHHHHHHHHHcC-CCEEEEEccCCCccccCCeEEEEeC
Q 000713 783 VDAHTAS-SLFNDYVMEALS-GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 783 LD~~~~~-~i~~~~~~~~~~-~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
||+.... .+.+.+.+...+ ++|+|++||+++.+..+|+++.|++
T Consensus 152 LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 152 LDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999 888766554444 7899999999998888999999964
No 411
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.88 E-value=3.3e-23 Score=241.00 Aligned_cols=200 Identities=24% Similarity=0.366 Sum_probs=164.2
Q ss_pred cccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEc--CeEEEEecCC--
Q 000713 625 NRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVY--GKTAYVSQTA-- 700 (1335)
Q Consensus 625 ~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~--g~~ayv~Q~~-- 700 (1335)
.+.|.++|++|.|+++. .+++++||-|..++.+++|||||+||||||+++.|++.|..|.|.-. .++++-.|..
T Consensus 387 ~pvi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAE 464 (614)
T ss_pred CCeEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHh
Confidence 45799999999997643 68999999999999999999999999999999999999999998654 3567777753
Q ss_pred -cCCCCCHHHHhc--cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEe
Q 000713 701 -WIQTGSIRENIL--FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLD 777 (1335)
Q Consensus 701 -~i~~~Tv~eNIl--fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLD 777 (1335)
.....+.-|+++ |....+.+..+..+..|+|..|....| ..+||+|||.||..||..+..|.+++||
T Consensus 465 ~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~kqP~lLlLD 534 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVKQPHLLLLD 534 (614)
T ss_pred hcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhcCCcEEEec
Confidence 335678888886 443355667788899999987765444 3589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE-EecChHHHH
Q 000713 778 DPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL-RAAPYHQLL 839 (1335)
Q Consensus 778 EP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~-~~g~~~~l~ 839 (1335)
|||++||..+...+-+ .+.. -.-+||+||||..++.+ +++|.+.+||.+. ..|.+....
T Consensus 535 EPtnhLDi~tid~lae-aiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 535 EPTNHLDIETIDALAE-AINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCCcCCCchhHHHHHH-HHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999766644 3332 24689999999999987 5999999998875 467776543
No 412
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.88 E-value=1.2e-22 Score=223.76 Aligned_cols=181 Identities=19% Similarity=0.234 Sum_probs=126.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEee-CCcEEEEEcCCCCCHHHHHHHHhcCC-CCCCcEEEE------------cCe
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVR-PGQKVAICGEVGSGKSTLLAAILGEV-PHTQGTIQV------------YGK 692 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~-~G~~v~IvG~~GsGKSTLL~~ilG~~-~~~~G~i~v------------~g~ 692 (1335)
.|+++|.. +|.+. ++++|+.. +|++++|+||||||||||+++|.+.+ .+..+.... ...
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 47888877 65421 56777654 58999999999999999999999643 333333332 124
Q ss_pred EEEEecCCcCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCC-CCccccCCCCCCCHHHHHHHHHHHHHcc--
Q 000713 693 TAYVSQTAWIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYG-DNTEIGERGVNLSGGQKQRIQLARALYQ-- 769 (1335)
Q Consensus 693 ~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~g-d~t~ig~~g~~LSGGQkqRv~LARAl~~-- 769 (1335)
+++++|++...-...| +. ..+.+.+.+.. . ++.+ ..+.++.++.+||||||||++||||++.
T Consensus 78 v~~~f~~~~~~~~~~r----~~-gl~~~~~~~~~---~-------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p 142 (213)
T cd03279 78 VSFTFQLGGKKYRVER----SR-GLDYDQFTRIV---L-------LPQGEFDRFLARPVSTLSGGETFLASLSLALALSE 142 (213)
T ss_pred EEEEEEECCeEEEEEE----ec-CCCHHHHHHhh---h-------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHH
Confidence 7888887643211111 11 22333222211 0 1111 1233456788999999999999999984
Q ss_pred --------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeE
Q 000713 770 --------DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEI 829 (1335)
Q Consensus 770 --------~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i 829 (1335)
+|++++|||||++||+.....+.+.+.+...+++|+|++||+++++.. +|++++|++|.+
T Consensus 143 ~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 143 VLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 679999999999999999998877655444458999999999998875 699999999864
No 413
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.88 E-value=3.5e-22 Score=237.37 Aligned_cols=199 Identities=28% Similarity=0.442 Sum_probs=158.5
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-------------
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK------------- 692 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~------------- 692 (1335)
..++++|++.. ..++|+||++++||+++|.|-.|||+|-|+++|.|.-++.+|+|.++|+
T Consensus 262 ~~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~ 334 (500)
T COG1129 262 PVLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334 (500)
T ss_pred cEEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHc
Confidence 45667776531 2589999999999999999999999999999999999999999999996
Q ss_pred -EEEEecCC----cCCCCCHHHHhccCC--------CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHH
Q 000713 693 -TAYVSQTA----WIQTGSIRENILFGS--------PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQ 759 (1335)
Q Consensus 693 -~ayv~Q~~----~i~~~Tv~eNIlfg~--------~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkq 759 (1335)
++|||.+- .+...+|++||.+.. ..+..+.++.. ....+++..-..+. .....+||||.+|
T Consensus 335 Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~--~~~~~~l~Ik~~s~----~~~v~~LSGGNQQ 408 (500)
T COG1129 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALA--ERYIRRLRIKTPSP----EQPIGTLSGGNQQ 408 (500)
T ss_pred CCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHH--HHHHHhcCcccCCc----cchhhcCCchhhh
Confidence 69999863 457889999998751 12222222221 12233343322222 2355689999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccc-cCCeEEEEeCCeEEEecChHH
Q 000713 760 RIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLP-AFDSVLLMSDGEILRAAPYHQ 837 (1335)
Q Consensus 760 Rv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~-~~D~iivl~~G~i~~~g~~~~ 837 (1335)
+|.|||.|+.+|+++||||||.|+|.-+..+|++.+.+...+|++||++|.++.++- .||||+||++|+|+..-+.++
T Consensus 409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999999999999999999999999999987778889999999999998765 799999999999987544443
No 414
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.2e-22 Score=228.47 Aligned_cols=177 Identities=20% Similarity=0.262 Sum_probs=114.0
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCC----------------CCCCcEEEEcCeEEEEecCCcCC---
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEV----------------PHTQGTIQVYGKTAYVSQTAWIQ--- 703 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~----------------~~~~G~i~v~g~~ayv~Q~~~i~--- 703 (1335)
..++++++ |++++|+||||||||||+++|.+.+ .+.+|.....+.+.+++|++.-+
T Consensus 15 ~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~~~~ 89 (243)
T cd03272 15 QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRFPI 89 (243)
T ss_pred CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCccCC
Confidence 45677776 7899999999999999999998443 33333111122234444443110
Q ss_pred ---CCCHH-------HHhccC-CCCChHHHHHHHHHhccHHHHh--hCCCCC-------CccccCCCCCCCHHHHHHHHH
Q 000713 704 ---TGSIR-------ENILFG-SPMDSHQYQETLERCSLIKDLE--LLPYGD-------NTEIGERGVNLSGGQKQRIQL 763 (1335)
Q Consensus 704 ---~~Tv~-------eNIlfg-~~~~~~~~~~~~~~~~l~~dl~--~l~~gd-------~t~ig~~g~~LSGGQkqRv~L 763 (1335)
+.+++ +++.+. .....+.+...++.+++..+-. ..+.|. ....++++.+||||||||++|
T Consensus 90 ~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~l 169 (243)
T cd03272 90 DKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVAL 169 (243)
T ss_pred CCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHH
Confidence 01111 222221 1223334444444443322100 001111 112456788999999999999
Q ss_pred HHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 764 ARALY----QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 764 ARAl~----~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
|||++ .+|+++||||||++||+...+.+.+.+.+. .+++|+|++||+.+....||++++|+
T Consensus 170 a~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~-~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 170 ALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL-SDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99996 368999999999999999999998866543 44788999999987777899999985
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=6.4e-22 Score=254.78 Aligned_cols=97 Identities=24% Similarity=0.467 Sum_probs=88.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~---~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++..+||||||||+.|||++.++| ++|||||||++||++....+.+.+.+...+|+|+|+|||+++.+..+|+|+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii 903 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWII 903 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEE
Confidence 57788899999999999999999999 999999999999999999998866655557999999999999998899999
Q ss_pred EE------eCCeEEEecChHHHHhcc
Q 000713 823 LM------SDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 823 vl------~~G~i~~~g~~~~l~~~~ 842 (1335)
.| ++|+|++.|+++++.+..
T Consensus 904 ~Lgp~~G~~~G~Iv~~Gt~~el~~~~ 929 (943)
T PRK00349 904 DLGPEGGDGGGEIVATGTPEEVAKVE 929 (943)
T ss_pred EecCCcCCCCCEEEEeCCHHHHHhCc
Confidence 99 799999999999997654
No 416
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=4.1e-22 Score=225.18 Aligned_cols=169 Identities=22% Similarity=0.267 Sum_probs=123.0
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcCCCCCC-cEEEEcC----------------eEEEEecCCc----------CCCCCHH
Q 000713 656 GQKVAICGEVGSGKSTLLAAILGEVPHTQ-GTIQVYG----------------KTAYVSQTAW----------IQTGSIR 708 (1335)
Q Consensus 656 G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-G~i~v~g----------------~~ayv~Q~~~----------i~~~Tv~ 708 (1335)
..+++|+||||||||||+++|.+.+.+.. |++...| ++++++|++. ....||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 45999999999999999999999988753 4554422 5788999852 1246888
Q ss_pred HHhccCCC----C-----ChHHHHHHHHHhccHHH-Hh-hCCCCC-------CccccCCCCCCCHHHHHHHHHHHHHc--
Q 000713 709 ENILFGSP----M-----DSHQYQETLERCSLIKD-LE-LLPYGD-------NTEIGERGVNLSGGQKQRIQLARALY-- 768 (1335)
Q Consensus 709 eNIlfg~~----~-----~~~~~~~~~~~~~l~~d-l~-~l~~gd-------~t~ig~~g~~LSGGQkqRv~LARAl~-- 768 (1335)
+|+..+.. . ..++..+.++.+++..| .. ..+.|+ .....+++.+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 88876532 1 12234445555554311 00 000000 02234678899999999999999997
Q ss_pred --cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 769 --QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 769 --~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
.+|+++|+||||++||+...+++++.+.+. .+|.|+|++||+.+.+..||+++-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~-~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTH-FKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 588999999999999999999998865543 56899999999988888899998775
No 417
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=6.7e-21 Score=217.22 Aligned_cols=160 Identities=32% Similarity=0.429 Sum_probs=121.1
Q ss_pred eeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEE-----------cC-------------e--EE----EEecCCcC
Q 000713 653 VRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQV-----------YG-------------K--TA----YVSQTAWI 702 (1335)
Q Consensus 653 i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v-----------~g-------------~--~a----yv~Q~~~i 702 (1335)
.++|+.++|+|+||-||||-++.|+|++.|.=|+-.- .| . +. ||.--|-.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 4689999999999999999999999999998765421 11 1 22 33333555
Q ss_pred CCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 703 QTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 703 ~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
..++|+|-+.-- .....++++++..+|.+-+ ++...+||||+-||++||-|+.+++|+|++|||+|-
T Consensus 177 ~KG~v~elLk~~--de~g~~devve~l~L~nvl-----------~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSy 243 (591)
T COG1245 177 VKGKVGELLKKV--DERGKFDEVVERLGLENVL-----------DRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSY 243 (591)
T ss_pred hcchHHHHHHhh--hhcCcHHHHHHHhcchhhh-----------hhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCccc
Confidence 678888866421 1123566777777665544 345568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEe
Q 000713 783 VDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMS 825 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~ 825 (1335)
||...+-..-+.+......+|+||+|.||+..|.. +|.|-++-
T Consensus 244 LDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 244 LDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred ccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99998877765444444458999999999999986 58776653
No 418
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=7e-22 Score=222.70 Aligned_cols=171 Identities=21% Similarity=0.224 Sum_probs=123.6
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC------------------e--EEEEecCCc--CCCCCHHHHh
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG------------------K--TAYVSQTAW--IQTGSIRENI 711 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g------------------~--~ayv~Q~~~--i~~~Tv~eNI 711 (1335)
.++ +++|+||||||||||+.+|.+.+.+..|++...+ . +.|..|++- +...++++.-
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 9999999999999999999998877666654321 1 223334321 1222333321
Q ss_pred c----cCCCCChHHHHHHHHHhccHHHHhh--CCCCCCccccC---------CCCCCCHHHHHHHHHHHHHccC----CC
Q 000713 712 L----FGSPMDSHQYQETLERCSLIKDLEL--LPYGDNTEIGE---------RGVNLSGGQKQRIQLARALYQD----AD 772 (1335)
Q Consensus 712 l----fg~~~~~~~~~~~~~~~~l~~dl~~--l~~gd~t~ig~---------~g~~LSGGQkqRv~LARAl~~~----~~ 772 (1335)
. -+.+.+...+++.++.+++..+... .++|+-+.+.+ +..+||||||||++||||++.+ |+
T Consensus 100 ~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~ 179 (247)
T cd03275 100 SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAP 179 (247)
T ss_pred eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCC
Confidence 1 1344566778888888887644221 23444444432 2378999999999999999764 99
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEe
Q 000713 773 IYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMS 825 (1335)
Q Consensus 773 ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~ 825 (1335)
++||||||++||+.....+.+.+.+...+|.|+|+|||+.+.+..||++++|.
T Consensus 180 ~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 180 FFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 99999999999999999998766555445899999999998888899999885
No 419
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.85 E-value=2.7e-22 Score=202.60 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=155.9
Q ss_pred EEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE-------------E
Q 000713 628 ISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT-------------A 694 (1335)
Q Consensus 628 i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~-------------a 694 (1335)
+.++|+..+ .-|-.+|.++..||+.-++|||||||||||..+.|+.+ -+|+|.++|.. +
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHH
Confidence 556666542 24677899999999999999999999999999999875 69999999953 7
Q ss_pred EEecCC-cCCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc----
Q 000713 695 YVSQTA-WIQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ---- 769 (1335)
Q Consensus 695 yv~Q~~-~i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~---- 769 (1335)
|.+|+. -.|.+.|...+....|. .++..+.-+.|++ +..+| .+|+....||||+-|||-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~-~~~a~~i~~i~~~------L~l~D--KL~Rs~~qLSGGEWQRVRLAav~LQv~Pd 146 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD-KTRTELLNDVAGA------LALDD--KLGRSTNQLSGGEWQRVRLAAVVLQITPD 146 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch-HHHHHHHHHHHhh------hcccc--hhhhhhhhcCcccceeeEEeEEEEEecCC
Confidence 888864 45677888888887664 3332222222322 22233 3567778999999999999988876
Q ss_pred ---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc-cccCCeEEEEeCCeEEEecChHHHHhc
Q 000713 770 ---DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF-LPAFDSVLLMSDGEILRAAPYHQLLAS 841 (1335)
Q Consensus 770 ---~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-l~~~D~iivl~~G~i~~~g~~~~l~~~ 841 (1335)
+.+++|+|||-++||......+...+......|.+||+.+||++. +.++|++..++.|++...|..+|++..
T Consensus 147 ~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 147 ANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 467999999999999998777765554567789999999999975 889999999999999999999998754
No 420
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.85 E-value=7.7e-22 Score=250.17 Aligned_cols=204 Identities=26% Similarity=0.428 Sum_probs=164.3
Q ss_pred cEEEEeeEEEecCC-CCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCC--CCCcEEEEcCe----------E
Q 000713 627 AISIKSASFSWEES-SSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVP--HTQGTIQVYGK----------T 693 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~-~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~--~~~G~i~v~g~----------~ 693 (1335)
....+|+.+.-+.+ +.+..|+||+=-++||.++|++|+|||||||||+.|+|-.. -.+|+|.++|. +
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 34455555543222 34568999999999999999999999999999999999642 35788899983 6
Q ss_pred EEEecCC-cCCCCCHHHHhccCCC------C-ChHH---HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHH
Q 000713 694 AYVSQTA-WIQTGSIRENILFGSP------M-DSHQ---YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQ 762 (1335)
Q Consensus 694 ayv~Q~~-~i~~~Tv~eNIlfg~~------~-~~~~---~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~ 762 (1335)
|||.|+. .+...||||-+.|... . ++++ .++|++-.+|++- -+..||..|..||..||+|+.
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLT 939 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLT 939 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceee
Confidence 9999976 5678899999988532 2 2233 3455555444322 235688888999999999999
Q ss_pred HHHHHccCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCc--cccCCeEEEEe-CCeEEEecChHH
Q 000713 763 LARALYQDA-DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDF--LPAFDSVLLMS-DGEILRAAPYHQ 837 (1335)
Q Consensus 763 LARAl~~~~-~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--l~~~D~iivl~-~G~i~~~g~~~~ 837 (1335)
||--|..+| .|++|||||||||+.++..+++.+.+....|+||+.+-||++- .+..|+++.|+ +|+.+..|+..+
T Consensus 940 IgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 940 IGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 999999999 9999999999999999999998888888899999999999975 57789999996 689999998765
No 421
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.85 E-value=2.2e-21 Score=226.65 Aligned_cols=127 Identities=13% Similarity=0.248 Sum_probs=108.3
Q ss_pred HHhHHHHHHHHhhcCCCCCCCccc------CCCC---CCCCCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEE
Q 000713 1200 NYIISVERLNQYMHVPSEAPEVVE------DNRP---PPNWPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIV 1270 (1335)
Q Consensus 1200 ~~~~sveRi~~y~~~~~E~~~~~~------~~~p---~~~WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIV 1270 (1335)
+.|+++||+.+|...+.|.....+ +..+ +.+||..|.|+|+|++++|+++.+++|+||||+|++||++|||
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~Iv 114 (329)
T PRK14257 35 QKLNKYQRAFAWLKLPKQKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFI 114 (329)
T ss_pred hccccccchhhHHhcccccchhhhhcccccccccccccCCCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEE
Confidence 568899999999888776543221 1111 4469999999999999999866667999999999999999999
Q ss_pred cCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC--------cCCCceeecccccccccHHhhH
Q 000713 1271 GRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY--------DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1271 GRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~--------~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
||||||||||+++|+|+++ |++|+|.|||+||.. ++.++++||+|.+|++||+||.
T Consensus 115 G~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi 183 (329)
T PRK14257 115 GPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNV 183 (329)
T ss_pred CCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHH
Confidence 9999999999999999997 579999999999952 4679999999999999999984
No 422
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.85 E-value=6.3e-21 Score=245.19 Aligned_cols=93 Identities=25% Similarity=0.490 Sum_probs=85.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQ---DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVL 822 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~---~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~ii 822 (1335)
++++..+||||||||+.|||++.+ +|++|||||||++||+...+.+.+.+.+...+|+|+|++||+++.+..||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 577888999999999999999997 59999999999999999999998876665567999999999999998899999
Q ss_pred EE------eCCeEEEecChHHH
Q 000713 823 LM------SDGEILRAAPYHQL 838 (1335)
Q Consensus 823 vl------~~G~i~~~g~~~~l 838 (1335)
+| ++|+|++.|+++++
T Consensus 902 ~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 902 DLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EecCCccCCCCEEEEeCCHHHh
Confidence 99 79999999998875
No 423
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.85 E-value=6.5e-18 Score=189.45 Aligned_cols=268 Identities=19% Similarity=0.185 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000713 313 FMSGFFALIKVLTLSAGPLFLNAFILVAESKAGF-KYEGYLLAITLFLAKILESLSQRQRYFRSRLIGLKVRSLLTAAIY 391 (1335)
Q Consensus 313 ~~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~~g~~l~~~l~~~~~~~~l~~~~~~~~~~r~g~riR~~L~~~Iy 391 (1335)
++..++.++..++..+.|++++.+++.+.++... ....+.++..+++..++.......+.+...+.+.+++..+...+|
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888899999999999999998765543 455666666666666777777777777789999999999999999
Q ss_pred HHHHcCChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 000713 392 RKQLRLSNAARLMHSGGEIMNYVTVDAYRIGEFPFWFHQIWTTSV-QLCIALIILFHAVGL-ATIAALVVITITVLCNTP 469 (1335)
Q Consensus 392 ~K~L~ls~~~~~~~s~G~IvNlms~D~~ri~~~~~~~h~~w~~pl-qi~lal~lL~~~lG~-a~l~gl~v~vl~~~~~~~ 469 (1335)
+|.++.+....+++++|+++|.+++|++++.+........+..++ .++.+++++ ..++| .+++.+++.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 82 EKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILL-FFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcc-cccccccccccchhhhhhHhhhhh
Confidence 999999998888889999999999999999998766554444443 444444444 34454 555556677778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHH--HH
Q 000713 470 LAKLQHKFQTKLMVAQDERLKACSEAFVNMKVLKLYAWETHFKNAIEILRNVEYKWLSAVQLRKAYNGFLFWSSPV--LV 547 (1335)
Q Consensus 470 ~~~~~~~~q~~~m~~~D~R~~~~sEiL~~ik~IKl~awE~~f~~~I~~~R~~El~~l~~~~~~~a~~~~~~~~~p~--lv 547 (1335)
+.|+.++..++..++.+++.+.++|.++|+|+||.|++|+.+.+++++.+++..+..++................. .+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877666655555544444333322222 35
Q ss_pred HHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHH
Q 000713 548 STATFGACY-FLNVPLYASNVFTFVATLRLVQDPI 581 (1335)
Q Consensus 548 ~~~tF~~~~-l~~~~Lt~~~vFt~lalf~~L~~pl 581 (1335)
.++.++.+. ..++.++++.+++.+.+++.+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 556777887 7788999999999999999999986
No 424
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.83 E-value=1.4e-21 Score=214.80 Aligned_cols=182 Identities=15% Similarity=0.150 Sum_probs=124.3
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCCcCC-CC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTAWIQ-TG 705 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~~i~-~~ 705 (1335)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|...+-...... -.++++|++|+.... +.
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~-~~~~i~~~~~~~~~~~~~ 74 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM-RQKKLSDLIHNSAGHPNL 74 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh-hhhhHHHHhcCCCCCCCC
Confidence 36666665 564 3468888887 7999999999999999999982211110111 124688889887553 45
Q ss_pred CHHHHhccCCCCChHHHHHHHHHh-------------ccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc---
Q 000713 706 SIRENILFGSPMDSHQYQETLERC-------------SLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ--- 769 (1335)
Q Consensus 706 Tv~eNIlfg~~~~~~~~~~~~~~~-------------~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~--- 769 (1335)
|++++..+-...... +.++.. +...++..++.+. ..+...||+|||||++||||++.
T Consensus 75 ~~~~~~~~~~~~~~~---~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~----~~~~~~lS~G~~~r~~la~al~~~~~ 147 (212)
T cd03274 75 DSCSVEVHFQEIIDK---PLLKSKGIDLDHNRFLILQGEVEQIAQMPKKS----WKNISNLSGGEKTLSSLALVFALHHY 147 (212)
T ss_pred ceEEEEEEEEeCCCH---HHHHHCCcCCCCCceEEcCCcEEEeecccccc----ccchhhcCHHHHHHHHHHHHHHhccc
Confidence 788877654332110 000000 0001122233332 33456899999999999999974
Q ss_pred -CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeC
Q 000713 770 -DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 770 -~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
+|++++|||||++||+.....+.+.+.+ ..++.|+|++||+.+....||+|++|..
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~-~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHH-HcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 5899999999999999999988875554 4567899999999877778999999963
No 425
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=6.4e-20 Score=199.58 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=112.5
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCC-----cE----EEE----cCeEEEEecCCcCCCCCHHHHhc
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQ-----GT----IQV----YGKTAYVSQTAWIQTGSIRENIL 712 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~-----G~----i~v----~g~~ayv~Q~~~i~~~Tv~eNIl 712 (1335)
++++++++.+| +.+|+||||||||||+.+|...+.... |. +.- ...+.+.+|+.-+.. |-.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~~~ 85 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----NPL 85 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC-----CcC
Confidence 46778888887 889999999999999999874332211 21 000 123556666544332 200
Q ss_pred cCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHHH
Q 000713 713 FGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHTA 788 (1335)
Q Consensus 713 fg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~ilLLDEP~saLD~~~~ 788 (1335)
. .....+.+++++ . .....+++.+||||||||++||||+ +.+|+++|||||+++||+...
T Consensus 86 ~--~~~~~~~~~~l~---------~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~ 149 (198)
T cd03276 86 C--VLSQDMARSFLT---------S-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR 149 (198)
T ss_pred C--HHHHHHHHHHhc---------c-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence 0 001112222221 1 1123467789999999999999999 699999999999999999999
Q ss_pred HHHHHHHHHHHcC---CCEEEEEccCCCccccCCeEEEEeCCe
Q 000713 789 SSLFNDYVMEALS---GKVVLLVTHQVDFLPAFDSVLLMSDGE 828 (1335)
Q Consensus 789 ~~i~~~~~~~~~~---~~TvIlvTH~~~~l~~~D~iivl~~G~ 828 (1335)
..+.+.+.+...+ ++|+|++||+++.+...|+|-+|+.|+
T Consensus 150 ~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 150 KISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9998866554332 368999999999999899999998754
No 426
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.7e-20 Score=207.40 Aligned_cols=198 Identities=21% Similarity=0.366 Sum_probs=148.2
Q ss_pred ccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCCc--
Q 000713 626 RAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTAW-- 701 (1335)
Q Consensus 626 ~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~~-- 701 (1335)
+.+-+.|++|.|++. +|.+++++|-|.--+.+|||||||.||||||++|+|.+.|..|+..-+- +||+..|+.-
T Consensus 585 PvLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEA 662 (807)
T ss_pred CeeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHh
Confidence 468899999999763 6899999999999999999999999999999999999999999987665 5788888653
Q ss_pred -CCCCCHHHHhccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCC
Q 000713 702 -IQTGSIRENILFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPF 780 (1335)
Q Consensus 702 -i~~~Tv~eNIlfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~ 780 (1335)
-...|--|.+.-+-..+....++.+...+|..-- .| -+...||||||.||+||---+..|||+||||||
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-------HT---ikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-------HT---IKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-------ce---EeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 2344777777533222223334444444443211 12 134579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCC-eEEEEeCCeEEE-ecChHHH
Q 000713 781 SAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFD-SVLLMSDGEILR-AAPYHQL 838 (1335)
Q Consensus 781 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D-~iivl~~G~i~~-~g~~~~l 838 (1335)
++||.++...+-+. +.. -+..||+||||-..+...| ..+|+++-.|-+ .|.+++.
T Consensus 733 NNLDIESIDALaEA-Ine--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDY 789 (807)
T KOG0066|consen 733 NNLDIESIDALAEA-INE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDY 789 (807)
T ss_pred CCcchhhHHHHHHH-HHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHH
Confidence 99999998777653 322 2457999999999987654 455666655533 3555543
No 427
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1e-19 Score=204.71 Aligned_cols=196 Identities=24% Similarity=0.372 Sum_probs=135.4
Q ss_pred cEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC---CCCCCcEEEEcCeEEEEecCCcCC
Q 000713 627 AISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGE---VPHTQGTIQVYGKTAYVSQTAWIQ 703 (1335)
Q Consensus 627 ~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~---~~~~~G~i~v~g~~ayv~Q~~~i~ 703 (1335)
.|.++|.+.+-. ++..+.|.||.|-.|..+++|||||-||||||+-|..- +|| +=.+-||-|+..--
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-------nIDvLlCEQEvvad 333 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-------NIDVLLCEQEVVAD 333 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-------CCceEeeeeeeeec
Confidence 478888887754 35688999999999999999999999999999999753 233 11245677765444
Q ss_pred CCCHHHHhccC---------------------CCCChHHHHHHHH---Hhcc-------HHHHhhCCCCCCccccCCCC-
Q 000713 704 TGSIRENILFG---------------------SPMDSHQYQETLE---RCSL-------IKDLELLPYGDNTEIGERGV- 751 (1335)
Q Consensus 704 ~~Tv~eNIlfg---------------------~~~~~~~~~~~~~---~~~l-------~~dl~~l~~gd~t~ig~~g~- 751 (1335)
+.|.-+.|+-. .....++.+++.+ +.+. .+-+. ..|...+.-+++.
T Consensus 334 ~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILA--GLGFskEMQ~rPt~ 411 (807)
T KOG0066|consen 334 STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILA--GLGFSKEMQERPTT 411 (807)
T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHh--hcCCChhHhcCCcc
Confidence 44444444321 1111122222211 1110 01112 2244445555554
Q ss_pred CCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEE
Q 000713 752 NLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEIL 830 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~ 830 (1335)
.+|||-|-||+||||||..|.++.|||||+.||-....++- +.++++. ||.++|+||-.|+.. |..|+.+++-++-
T Consensus 412 kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLd-NYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 412 KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLD-NYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred ccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehh-hHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 69999999999999999999999999999999998876663 4555553 899999999999986 7999999987763
Q ss_pred -EecChHH
Q 000713 831 -RAAPYHQ 837 (1335)
Q Consensus 831 -~~g~~~~ 837 (1335)
+.|+|.-
T Consensus 489 yYrGNY~~ 496 (807)
T KOG0066|consen 489 YYRGNYTL 496 (807)
T ss_pred hhcchHHH
Confidence 4566644
No 428
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.82 E-value=9.6e-20 Score=207.88 Aligned_cols=181 Identities=24% Similarity=0.335 Sum_probs=134.7
Q ss_pred eeEEEecCCCCCCceeeeeeEe-----eCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEEEEecCC-cCCCC
Q 000713 632 SASFSWEESSSKPTMRNISLEV-----RPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTAYVSQTA-WIQTG 705 (1335)
Q Consensus 632 ~~~~~~~~~~~~~~L~~isl~i-----~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~ayv~Q~~-~i~~~ 705 (1335)
+.-++|++- +..+.+..|++ ..||+++++||||-||||+.+.|+|.++|++|. ..+=+++|=||-- --+++
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~~vSyKPQyI~~~~~g 416 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDLKVSYKPQYISPDYDG 416 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-CccceEeecceeecCCCCC
Confidence 334455431 23455566654 567889999999999999999999999999998 5566899999963 34899
Q ss_pred CHHHHhccCCC--CChHHHH-HHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 000713 706 SIRENILFGSP--MDSHQYQ-ETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSA 782 (1335)
Q Consensus 706 Tv~eNIlfg~~--~~~~~~~-~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~sa 782 (1335)
||++-+.-..+ +...+|+ ++.+-..|++-+ ..+..+||||+.|||++|-||.+++|+||||||.+.
T Consensus 417 tV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhhcccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 99998753222 3333333 333433443333 345568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 783 VDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 783 LD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
||.+.+-.+-+.+.+-. .+++|.++|-||+-.+.. +|+++|.+.
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99998765543333322 358999999999999987 599999863
No 429
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=6.7e-20 Score=195.94 Aligned_cols=153 Identities=23% Similarity=0.205 Sum_probs=105.5
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeE--EEEecCCcCCCCCHHHHhccCCCCChHHHHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKT--AYVSQTAWIQTGSIRENILFGSPMDSHQYQET 725 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~--ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~ 725 (1335)
+..+...++.+.+|+||||||||++|.+|.=.+--.+-....+... .+-...++-..+.|+ +.|
T Consensus 14 ~~~~~~~~~~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~f------------ 79 (178)
T cd03239 14 DETVVGGSNSFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVE--ITF------------ 79 (178)
T ss_pred CCEEecCCCceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEE--EEE------------
Confidence 3344443334999999999999999999854321111000000000 000011111111111 111
Q ss_pred HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 000713 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALY----QDADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801 (1335)
Q Consensus 726 ~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~----~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~ 801 (1335)
...+..+|.||.|++ ||||||||++|||++. .+|+++++|||+++||+...+.+.+.+.+...+
T Consensus 80 ------~~~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~ 147 (178)
T cd03239 80 ------DKSYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH 147 (178)
T ss_pred ------ECceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 222677899999987 9999999999999984 799999999999999999999998866555455
Q ss_pred CCEEEEEccCCCccccCCeEEEEeC
Q 000713 802 GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 802 ~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
|+|+|++||+.+.+..+|+++.+..
T Consensus 148 g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 148 TSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCEEEEEECCHHHHhhCCeEEEEEE
Confidence 7999999999998888999999975
No 430
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.81 E-value=4.7e-19 Score=206.36 Aligned_cols=208 Identities=25% Similarity=0.391 Sum_probs=169.0
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe-----------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK----------- 692 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~----------- 692 (1335)
.+..++++|++..=+ .+.+.++||||+|++||+++|.|-.|-|-+-|+.+|.|+.++.+|+|.++|+
T Consensus 254 g~~vL~V~~L~v~~~--~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~ 331 (501)
T COG3845 254 GEVVLEVEDLSVKDR--RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRER 331 (501)
T ss_pred CCeEEEEeeeEeecC--CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHH
Confidence 456799999998543 2356899999999999999999999999999999999999999999999984
Q ss_pred ----EEEEecCC----cCCCCCHHHHhccCCCCCh-------HHHHHHHHH-hccHHHHhhCCCCCCccccCCCCCCCHH
Q 000713 693 ----TAYVSQTA----WIQTGSIRENILFGSPMDS-------HQYQETLER-CSLIKDLELLPYGDNTEIGERGVNLSGG 756 (1335)
Q Consensus 693 ----~ayv~Q~~----~i~~~Tv~eNIlfg~~~~~-------~~~~~~~~~-~~l~~dl~~l~~gd~t~ig~~g~~LSGG 756 (1335)
+||||.+. .....|+.||+.++...++ -++.++.+. ..+.+.++.-+.+.. .+..+||||
T Consensus 332 r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGG 407 (501)
T COG3845 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGG 407 (501)
T ss_pred HhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCc
Confidence 47999875 4678899999987643221 011111111 123344443333332 345689999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcc-ccCCeEEEEeCCeEEEecCh
Q 000713 757 QKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFL-PAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 757 QkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l-~~~D~iivl~~G~i~~~g~~ 835 (1335)
++||+-+||-+..+|++++...||-|||....+.|.+.+++...+|+.|++++-|++++ ..+|+|.||.+|+|+...++
T Consensus 408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~ 487 (501)
T COG3845 408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPP 487 (501)
T ss_pred ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccc
Confidence 99999999999999999999999999999999999999999889999999999999986 56899999999999987776
Q ss_pred HH
Q 000713 836 HQ 837 (1335)
Q Consensus 836 ~~ 837 (1335)
++
T Consensus 488 ~~ 489 (501)
T COG3845 488 EE 489 (501)
T ss_pred cc
Confidence 65
No 431
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.81 E-value=3.7e-19 Score=184.33 Aligned_cols=200 Identities=24% Similarity=0.414 Sum_probs=155.7
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEE---------
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA--------- 694 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~a--------- 694 (1335)
.+.+|++.+..|+|+.. .|++-|+|++++.|....+||.|||||||||++|.|-.-.-.|.|.+.|+.+
T Consensus 10 ~~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~S 87 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESS 87 (291)
T ss_pred ccceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccccc
Confidence 45789999999999864 4899999999999999999999999999999999998777779999988543
Q ss_pred ----EEec----------CCcCC-CCCHHHHhccCCCC-ChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHH
Q 000713 695 ----YVSQ----------TAWIQ-TGSIRENILFGSPM-DSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQK 758 (1335)
Q Consensus 695 ----yv~Q----------~~~i~-~~Tv~eNIlfg~~~-~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQk 758 (1335)
|.-- +..+| +.++ +..+||-.. +.+|.++.++...+ | +.=|.+.+|-|||
T Consensus 88 gdl~YLGgeW~~~~~~agevplq~D~sa-e~mifgV~g~dp~Rre~LI~iLDI--d-----------l~WRmHkvSDGqr 153 (291)
T KOG2355|consen 88 GDLSYLGGEWSKTVGIAGEVPLQGDISA-EHMIFGVGGDDPERREKLIDILDI--D-----------LRWRMHKVSDGQR 153 (291)
T ss_pred CceeEecccccccccccccccccccccH-HHHHhhccCCChhHhhhhhhheec--c-----------ceEEEeeccccch
Confidence 3211 11122 2233 344454432 33444444443211 1 2235678999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeCCeEEEecChH
Q 000713 759 QRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILRAAPYH 836 (1335)
Q Consensus 759 qRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~~g~~~ 836 (1335)
+||+||..|++.=+++||||.|--||.-.+..+.+-+.... .+|.|++++||-.+-++. ..+++.|++|+++..-+|+
T Consensus 154 RRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 154 RRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQ 233 (291)
T ss_pred hhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccc
Confidence 99999999999999999999999999999999988766554 479999999999988875 6999999999999977776
Q ss_pred HHH
Q 000713 837 QLL 839 (1335)
Q Consensus 837 ~l~ 839 (1335)
++.
T Consensus 234 ~i~ 236 (291)
T KOG2355|consen 234 KIK 236 (291)
T ss_pred hhh
Confidence 664
No 432
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=9.5e-20 Score=211.39 Aligned_cols=192 Identities=23% Similarity=0.416 Sum_probs=157.1
Q ss_pred CcccEEEEeeEEEecCCCCCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcC--eEEEEecCC-
Q 000713 624 VNRAISIKSASFSWEESSSKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYG--KTAYVSQTA- 700 (1335)
Q Consensus 624 ~~~~i~i~~~~~~~~~~~~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g--~~ayv~Q~~- 700 (1335)
..+.+++.+++|.|+++.. +.+.++++++.--+.++++|+||.||||+++++.|+..|..|.+.+.+ +++|-+|..
T Consensus 359 ~~p~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCeeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 3457999999999987543 789999999999999999999999999999999999999999999887 589999964
Q ss_pred -cCC-CCCHHHHhc--c-CCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEE
Q 000713 701 -WIQ-TGSIRENIL--F-GSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYL 775 (1335)
Q Consensus 701 -~i~-~~Tv~eNIl--f-g~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilL 775 (1335)
|+. +.+.-|-.. | |. .++.|++.+...++..++..-+ ...||||||-||++|.+...+|.+|+
T Consensus 438 d~l~~~v~~vd~~~~~~pG~--~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLV 505 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGK--TEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLV 505 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCC--CHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEE
Confidence 321 222233222 2 22 5677888888888887776432 34799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCcccc-CCeEEEEeCCeEEE
Q 000713 776 LDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPA-FDSVLLMSDGEILR 831 (1335)
Q Consensus 776 LDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~-~D~iivl~~G~i~~ 831 (1335)
|||||+.||.++-..+-+.+. . =+-.||+||||.+++.. |+.+.+.+||++..
T Consensus 506 LDEPTNhLD~dsl~AL~~Al~-~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 506 LDEPTNHLDRDSLGALAKALK-N--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred ecCCCccccHHHHHHHHHHHH-h--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999876654322 1 14579999999999986 79999999999975
No 433
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.78 E-value=1.5e-16 Score=178.47 Aligned_cols=221 Identities=21% Similarity=0.289 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCchhhHHHHhcChhHHHhhhHHHHHHHHHHHHHHHH
Q 000713 967 FVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDIPFSLIFAVGATTNACS 1046 (1335)
Q Consensus 967 ~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~GrIlnRfS~D~~~vD~~lp~~~~~~~~~~~~~~~ 1046 (1335)
++...+.....+.....+.+..+++++++++++++.|.+||+++++|+++||+++|++.+++.+...+..++..+..+++
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~ 131 (275)
T PF00664_consen 52 LLIFLFSYIYFYLSSRISQRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIF 131 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhh
Confidence 33444444444455688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHccccchHHHHHHHHHcchHHHHhcccHHHHHHHHHHHHh
Q 000713 1047 NLGVLAVVTWQVLFVSIPVIFLAIRLQRYYFVTAKELMRLNGTTKSLVANHLAESIAGAMTIRAFEEEDRFFAKNLDLID 1126 (1335)
Q Consensus 1047 ~l~vi~~~~~~~~~~~ipl~~~~~~~q~~y~~tsrel~Rl~~~~rSpi~s~f~Etl~G~~tIRAf~~e~~f~~~~~~~ld 1126 (1335)
.++++...+|++.++.+...++++.+..++.+..++..+......+...+++.|.++|+++||+|+.|+++.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~ 211 (275)
T PF00664_consen 132 SLILLFFISWKLALILLIILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALE 211 (275)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhcccccccccccccchhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999998888888888999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-cCCCCcCHHHHHHHHHHHHHHHHH
Q 000713 1127 TNASPFFHSFAANEWLIQRLETLSATVISSA-AFCMVL-LPPGTFTPGFIGMALSYGLSLNSS 1187 (1335)
Q Consensus 1127 ~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~-~~~~v~-~~~~~~~~g~~Glalsy~l~l~~~ 1187 (1335)
+..+........+.|.....+.+..+...++ .+.... ...|.+++|.+-..++|...+.++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 212 KYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999998899999988888887744443 333444 457889999998888888877654
No 434
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.77 E-value=4.9e-18 Score=219.10 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=85.8
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEE
Q 000713 746 IGERGVNLSGGQKQRIQLARALYQDA--DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLL 823 (1335)
Q Consensus 746 ig~~g~~LSGGQkqRv~LARAl~~~~--~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iiv 823 (1335)
.++...+|||||||||+|||||.++| ++|||||||++||++....+++.+.+...+|+|||+|+|+++++..||+|++
T Consensus 483 l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~ 562 (943)
T PRK00349 483 LSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVD 562 (943)
T ss_pred CCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 46778899999999999999999997 9999999999999999999998777666679999999999999888999999
Q ss_pred E------eCCeEEEecChHHHH
Q 000713 824 M------SDGEILRAAPYHQLL 839 (1335)
Q Consensus 824 l------~~G~i~~~g~~~~l~ 839 (1335)
| ++|+|+..|+++++.
T Consensus 563 LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 563 IGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred eccccCCCCCEEeeccCHHHHh
Confidence 9 899999999887763
No 435
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.75 E-value=1.4e-18 Score=198.29 Aligned_cols=91 Identities=30% Similarity=0.559 Sum_probs=84.8
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|+|+|+|++++|+++.+++|+|+||+|++||++|||||||||||||+++|+|+++ .+|+|.|||+|+.. ++.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 6899999999998666679999999999999999999999999999999999998 78999999999865 3579
Q ss_pred ceeecccccccccHHhhH
Q 000713 1309 ELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~~ 1326 (1335)
+++||+|.+|.+||+||.
T Consensus 80 ~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred EEECCCcccchhhHHHHh
Confidence 999999999999999984
No 436
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=2e-18 Score=188.56 Aligned_cols=146 Identities=15% Similarity=0.124 Sum_probs=109.0
Q ss_pred ceeeeeeEeeCCc-EEEEEcCCCCCHHHHHHHHh--------cCCCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCC
Q 000713 645 TMRNISLEVRPGQ-KVAICGEVGSGKSTLLAAIL--------GEVPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGS 715 (1335)
Q Consensus 645 ~L~~isl~i~~G~-~v~IvG~~GsGKSTLL~~il--------G~~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~ 715 (1335)
...++|+++++|+ +++|+|||||||||||++|. |...|....+ .++|+.|.--
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~----~~~~~~~~~~-------------- 77 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS----SLPVFENIFA-------------- 77 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc----cCcCccEEEE--------------
Confidence 3567899999995 79999999999999999998 5444432211 1223222210
Q ss_pred CCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 000713 716 PMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDY 795 (1335)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~ 795 (1335)
.+ ++...+.+...++|+|||||..+++++ .+|+++++|||++++|+..+..+...+
T Consensus 78 ---------------------~l--g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~ 133 (200)
T cd03280 78 ---------------------DI--GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI 133 (200)
T ss_pred ---------------------ec--CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence 00 011112334568999999999999985 899999999999999999999887655
Q ss_pred HHH-HcCCCEEEEEccCCCccccCCeEEEEeCCeEEEe
Q 000713 796 VME-ALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRA 832 (1335)
Q Consensus 796 ~~~-~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~ 832 (1335)
++. ...+.|+|++||+.+....+|+++.|++|++...
T Consensus 134 l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 134 LEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 544 3458999999999766677899999999999765
No 437
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=2.1e-18 Score=178.82 Aligned_cols=215 Identities=20% Similarity=0.316 Sum_probs=155.5
Q ss_pred EEEEeeEEEecCCC-CCCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEE-----EEc-----------
Q 000713 628 ISIKSASFSWEESS-SKPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTI-----QVY----------- 690 (1335)
Q Consensus 628 i~i~~~~~~~~~~~-~~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i-----~v~----------- 690 (1335)
+.++|++.....+. ...+++++|+++.+||+-++||++|||||-..++|.|..+- .=.| .++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kd-nW~vTADR~Rf~~idLL~L~Pr~ 82 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKD-NWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhccccc-ceEEEhhhcccccchhhcCChHH
Confidence 45667666664332 34589999999999999999999999999999999998642 2222 111
Q ss_pred ------CeEEEEecCCcC---CCCCHH----HHhcc----CCC-----CChHHHHHHHHHhccHHHHhhCCCCCCccccC
Q 000713 691 ------GKTAYVSQTAWI---QTGSIR----ENILF----GSP-----MDSHQYQETLERCSLIKDLELLPYGDNTEIGE 748 (1335)
Q Consensus 691 ------g~~ayv~Q~~~i---~~~Tv~----eNIlf----g~~-----~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~ 748 (1335)
-.++.++|+|.- ++.+|- +||-+ |+- ..+.+.-+.+.+.+..+ +.| ....
T Consensus 83 RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKd------HkD--IM~S 154 (330)
T COG4170 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKD------HKD--IMRS 154 (330)
T ss_pred hhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhcccc------HHH--HHHh
Confidence 136899999853 334443 44432 110 11222333444444432 111 1245
Q ss_pred CCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEccCCCcccc-CCeEEEEeC
Q 000713 749 RGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-LSGKVVLLVTHQVDFLPA-FDSVLLMSD 826 (1335)
Q Consensus 749 ~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~l~~-~D~iivl~~ 826 (1335)
.+.+|--|+-|+|.||.|+..+|++++.||||+++|+.++.+||..+-+.. ..|.|+++++||+..+.+ ||+|-||.-
T Consensus 155 YP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 155 YPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred CcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 677899999999999999999999999999999999999999998665443 358899999999999875 899999999
Q ss_pred CeEEEecChHHHHhcch--HHHHHHHH
Q 000713 827 GEILRAAPYHQLLASSK--EFQELVSA 851 (1335)
Q Consensus 827 G~i~~~g~~~~l~~~~~--~~~~l~~~ 851 (1335)
|+-+++++.+++.+... ..+.++.+
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi~a 261 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALIRA 261 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHHHh
Confidence 99999999999986542 33444444
No 438
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.74 E-value=4.2e-15 Score=180.59 Aligned_cols=353 Identities=18% Similarity=0.172 Sum_probs=232.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCch------hhHHHHhcChhHHHhhh
Q 000713 957 RLIVVYLLIGFVSTLFLMSRSLSSVVLGIRSSKSLFSQLLNSLFRAPMSFYDSTPLG------RILSRVSSDLSIVDLDI 1030 (1335)
Q Consensus 957 ~~~~vy~~l~~~~~~~~~~~~~~~~~~~~~as~~lh~~ll~~il~apmsFFd~tp~G------rIlnRfS~D~~~vD~~l 1030 (1335)
..+.+|..++.+..+....+.++-....++.-.-|-+.+++.-+..- +||-..-.| ..=+|...|+...-...
T Consensus 87 ~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 87 QQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44788888998888888889998888888888888888888888776 544333332 33457777776655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH----HHHHHH-HHHHHHHHHHHHHhHHHHHHHHcccc
Q 000713 1031 PFSLIFAVGATTNACSNLGVLA--------------VVTWQVL----FVSIPV-IFLAIRLQRYYFVTAKELMRLNGTTK 1091 (1335)
Q Consensus 1031 p~~~~~~~~~~~~~~~~l~vi~--------------~~~~~~~----~~~ipl-~~~~~~~q~~y~~tsrel~Rl~~~~r 1091 (1335)
-.....++.+++++++-.++.- +..|.++ ++.+++ .++.++++|...+-+-+-.++|+.-|
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 4444445555554444333332 0111111 111222 22334667777777777777888777
Q ss_pred chHHHHHHHHHcchHHHHhccc---HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000713 1092 SLVANHLAESIAGAMTIRAFEE---EDRFFAKNLDLIDTNASPFFHSFAANEWLIQRLETLSATVISSAAFCMVLLPPGT 1168 (1335)
Q Consensus 1092 Spi~s~f~Etl~G~~tIRAf~~---e~~f~~~~~~~ld~~~~~~~~~~~~~~Wl~~rl~~l~~~~~~~~~~~~v~~~~~~ 1168 (1335)
+-+. .+.| ....|-.|+- |.+..++....+..+.+.......--.|+..-...++.++-...+. -. ...|.
T Consensus 246 ~~Lv-rv~e---naE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~a-p~-~f~g~ 319 (604)
T COG4178 246 YSLV-RVRE---NAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAA-PR-YFSGQ 319 (604)
T ss_pred HHHH-HHHh---hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhcc-Hh-hhcCc
Confidence 6543 2334 3444555554 4455554444444444433333333334443333333311111111 11 22578
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhc-C-----CCCCCCcccCCCCCCCCCc--cceEEEE
Q 000713 1169 FTPGFIGMALSYGLSLNSSLVMSIQNQCTLANYIISVERLNQYMH-V-----PSEAPEVVEDNRPPPNWPV--VGKVDIC 1240 (1335)
Q Consensus 1169 ~~~g~~Glalsy~l~l~~~l~~~v~~~~~le~~~~sveRi~~y~~-~-----~~E~~~~~~~~~p~~~WP~--~G~I~f~ 1240 (1335)
++-|-+..+.+--.++...+.|++.++..+.+--.++.|+.++.+ + ++|.+.... +.-.--. ...|+|+
T Consensus 320 i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~ 396 (604)
T COG4178 320 ITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG---RRIDFDDNADHGITLE 396 (604)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc---ccccccccccceeEEe
Confidence 888888888888889999999999999999999999999999973 2 222211100 0000001 4789999
Q ss_pred EEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccccccc
Q 000713 1241 DLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGSLFGQ 1320 (1335)
Q Consensus 1241 nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~LFsG 1320 (1335)
|++++-+++. ..|++++|+|+|||.+-|.|++|||||||+.+|.++.+--+|+|.+- .-...-.+||.|++=.|
T Consensus 397 nl~l~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----~~~~~lflpQ~PY~p~G 470 (604)
T COG4178 397 NLSLRTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----ADSALLFLPQRPYLPQG 470 (604)
T ss_pred eeeEECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----CCCceEEecCCCCCCCc
Confidence 9999987666 69999999999999999999999999999999999999999998765 23456789999999999
Q ss_pred cHHhh
Q 000713 1321 LVKEY 1325 (1335)
Q Consensus 1321 TIrE~ 1325 (1335)
|.||.
T Consensus 471 tLre~ 475 (604)
T COG4178 471 TLREA 475 (604)
T ss_pred cHHHH
Confidence 99994
No 439
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.72 E-value=3.1e-17 Score=180.49 Aligned_cols=175 Identities=19% Similarity=0.163 Sum_probs=107.1
Q ss_pred eeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcE---------EEEcC----eEEEEecC-CcCCCCCHHHHh
Q 000713 646 MRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGT---------IQVYG----KTAYVSQT-AWIQTGSIRENI 711 (1335)
Q Consensus 646 L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~---------i~v~g----~~ayv~Q~-~~i~~~Tv~eNI 711 (1335)
++++.+++.+| +.+|+|+|||||||||.+|.-.+-..... ..-.| .+-...+. ++- =..+|+
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~---~~~~n~ 89 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGN---IQVDNL 89 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCc---cccCCc
Confidence 35666777666 88999999999999999986544221100 00011 01111111 110 122333
Q ss_pred ccCCCCChHHHHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH----ccCCCEEEEeCCCCCCCHHH
Q 000713 712 LFGSPMDSHQYQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL----YQDADIYLLDDPFSAVDAHT 787 (1335)
Q Consensus 712 lfg~~~~~~~~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl----~~~~~ilLLDEP~saLD~~~ 787 (1335)
.+- .+.++..+.... .-.+-+..++.+++. -..++.+||||||||+.+|+++ +.+|+++++|||+++||+..
T Consensus 90 ~~~--~~q~~~~~~~~~-~~~e~l~~~~~~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~ 165 (213)
T cd03277 90 CQF--LPQDRVGEFAKL-SPIELLVKFREGEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTN 165 (213)
T ss_pred eEE--EchHHHHHHHhC-ChHhHheeeecCCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHH
Confidence 221 122222222111 111122233433332 2457789999999999877554 58999999999999999999
Q ss_pred HHHHHHHHHHHHcC-C-CEEEEEccCCCc-cccCC--eEEEEeCCe
Q 000713 788 ASSLFNDYVMEALS-G-KVVLLVTHQVDF-LPAFD--SVLLMSDGE 828 (1335)
Q Consensus 788 ~~~i~~~~~~~~~~-~-~TvIlvTH~~~~-l~~~D--~iivl~~G~ 828 (1335)
+..+++.+.+...+ | .|+|++||++.. +..+| +|++|++|+
T Consensus 166 ~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 166 ERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999877665544 5 589999999865 44554 889999986
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.1e-16 Score=194.24 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=90.2
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeE
Q 000713 745 EIGERGVNLSGGQKQRIQLARALYQDA---DIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSV 821 (1335)
Q Consensus 745 ~ig~~g~~LSGGQkqRv~LARAl~~~~---~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~i 821 (1335)
.+|+...+||||+-|||-||.-|..++ -+|+|||||.||..+-.+++.+-+.+...+|.|||+|.|+++.++.||+|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 468999999999999999999999887 99999999999999999999987777778899999999999999999999
Q ss_pred EEE------eCCeEEEecChHHHHhcc
Q 000713 822 LLM------SDGEILRAAPYHQLLASS 842 (1335)
Q Consensus 822 ivl------~~G~i~~~g~~~~l~~~~ 842 (1335)
+-| +.|+|+.+|+|+|+.+..
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~ 921 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVK 921 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCc
Confidence 999 368999999999997643
No 441
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.72 E-value=4.2e-17 Score=184.16 Aligned_cols=221 Identities=26% Similarity=0.375 Sum_probs=157.7
Q ss_pred HHHHHhcCCCCCcccc---cccCCCCCCcccEEEEeeEEEecCC-----------------------CCCCceeeeeeEe
Q 000713 600 RIVNFLEAPELQSMNI---RQKGNIENVNRAISIKSASFSWEES-----------------------SSKPTMRNISLEV 653 (1335)
Q Consensus 600 RI~~fL~~~e~~~~~~---~~~~~~~~~~~~i~i~~~~~~~~~~-----------------------~~~~~L~~isl~i 653 (1335)
-|.+|+..+++..... ++....+.-+..+.++|++..+.+. ....+++|+||++
T Consensus 327 ~i~rf~~~d~~A~~h~L~~pRyr~ve~L~~p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~i 406 (593)
T COG2401 327 YIDRFVGEDPMAYPHLLLAPRYRMVEKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEI 406 (593)
T ss_pred HHHHHhccCccccccceeccccccccccCCccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEe
Confidence 3567887766533221 1111111134457777777766431 1235899999999
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcCC--------CCCCcEEEEcCe--EEEEecC--CcCCCCCHHHHhccCCCCChHH
Q 000713 654 RPGQKVAICGEVGSGKSTLLAAILGEV--------PHTQGTIQVYGK--TAYVSQT--AWIQTGSIRENILFGSPMDSHQ 721 (1335)
Q Consensus 654 ~~G~~v~IvG~~GsGKSTLL~~ilG~~--------~~~~G~i~v~g~--~ayv~Q~--~~i~~~Tv~eNIlfg~~~~~~~ 721 (1335)
++|++++|+|+|||||||+|++|+|.+ +|++|.|.+--+ .+.+|-+ |-+-.-|+.|.+.- ..-|...
T Consensus 407 kpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s-~tGD~~~ 485 (593)
T COG2401 407 KPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS-KTGDLNA 485 (593)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhh-ccCchhH
Confidence 999999999999999999999999874 688998887433 2445543 33334467666532 2223333
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-c
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVMEA-L 800 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~-~ 800 (1335)
..+++...++. |...--.+..+||-|||.|..||+++..+|.+++.||--|.||+.++..+...+-+.. .
T Consensus 486 AveILnraGls---------DAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe 556 (593)
T COG2401 486 AVEILNRAGLS---------DAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556 (593)
T ss_pred HHHHHHhhccc---------hhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 44556555553 3333345667899999999999999999999999999999999999999988776554 3
Q ss_pred CCCEEEEEccCCCccccC--CeEEEEeCCeEE
Q 000713 801 SGKVVLLVTHQVDFLPAF--DSVLLMSDGEIL 830 (1335)
Q Consensus 801 ~~~TvIlvTH~~~~l~~~--D~iivl~~G~i~ 830 (1335)
.|.|.+.+||+.++.... |+++.+.=|+..
T Consensus 557 ~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 557 AGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 589999999999998763 999988776654
No 442
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=2.3e-17 Score=181.10 Aligned_cols=96 Identities=41% Similarity=0.748 Sum_probs=88.7
Q ss_pred CCccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------
Q 000713 1231 WPVVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------ 1304 (1335)
Q Consensus 1231 WP~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------ 1304 (1335)
||..|.++++|++++|.....++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 99999999999999996543469999999999999999999999999999999999999999999999999853
Q ss_pred cCCCceeecccccccccHHhhH
Q 000713 1305 DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|+|.+|.+|++||.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l 102 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNL 102 (207)
T ss_pred HhhEEEEecCCcccCccHHHHh
Confidence 4578999999999999999984
No 443
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.69 E-value=1.5e-16 Score=167.80 Aligned_cols=135 Identities=24% Similarity=0.311 Sum_probs=99.0
Q ss_pred eeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCe--EE-EEecCCcCCCCCHHHHhccCCCCChHHHHHH
Q 000713 649 ISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGK--TA-YVSQTAWIQTGSIRENILFGSPMDSHQYQET 725 (1335)
Q Consensus 649 isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~--~a-yv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~ 725 (1335)
.++.+.+|.+++|+|||||||||+++++....-..+|.+..... .+ ++++... .|
T Consensus 14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~------------ 71 (162)
T cd03227 14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSA----------EL------------ 71 (162)
T ss_pred cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEE----------EE------------
Confidence 34455566799999999999999999986655444444332111 01 0111000 00
Q ss_pred HHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 000713 726 LERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQ----DADIYLLDDPFSAVDAHTASSLFNDYVMEALS 801 (1335)
Q Consensus 726 ~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~----~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~ 801 (1335)
. .+ -.+||+||+||++|||++.. +|+++|+|||++++|++.+..+.+.+.+...+
T Consensus 72 -----------i-----~~-----~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~ 130 (162)
T cd03227 72 -----------I-----FT-----RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK 130 (162)
T ss_pred -----------e-----hh-----eeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 0 00 01399999999999999986 78999999999999999999998877665545
Q ss_pred CCEEEEEccCCCccccCCeEEEEeC
Q 000713 802 GKVVLLVTHQVDFLPAFDSVLLMSD 826 (1335)
Q Consensus 802 ~~TvIlvTH~~~~l~~~D~iivl~~ 826 (1335)
+.++|++||+.+....+|+++.|+.
T Consensus 131 ~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 131 GAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred CCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 7899999999999988999999964
No 444
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.68 E-value=2.9e-16 Score=210.23 Aligned_cols=105 Identities=26% Similarity=0.347 Sum_probs=92.5
Q ss_pred hCCCCCCccccCCCCCCCHHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCC
Q 000713 737 LLPYGDNTEIGERGVNLSGGQKQRIQLARALYQD---ADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVD 813 (1335)
Q Consensus 737 ~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~---~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~ 813 (1335)
....|+. .+|+...+|||||.|||-||.-|..+ +.+|+|||||.||+++..+++.+.+.+...+|.|||+|.||++
T Consensus 1685 ~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~ 1763 (1809)
T PRK00635 1685 DNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA 1763 (1809)
T ss_pred HcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 3344554 36899999999999999999999875 7999999999999999999998876666788999999999999
Q ss_pred ccccCCeEEEEe------CCeEEEecChHHHHhcc
Q 000713 814 FLPAFDSVLLMS------DGEILRAAPYHQLLASS 842 (1335)
Q Consensus 814 ~l~~~D~iivl~------~G~i~~~g~~~~l~~~~ 842 (1335)
.++.||+|+-|. .|+|+..|+|+++.+..
T Consensus 1764 ~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1764 LLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 999999999994 58999999999997643
No 445
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=2e-16 Score=167.18 Aligned_cols=88 Identities=35% Similarity=0.467 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecC-------CcCCC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAE-------YDEPM 1308 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~-------~~~~i 1308 (1335)
-|+++||+.+|... .||||||++|++||.|.||||+|||||||+.+|-+|-+|++|+|.|||.++. .|+.+
T Consensus 2 mi~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 2 MIEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred eEEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 48999999999743 4999999999999999999999999999999999999999999999998775 36789
Q ss_pred ceeecccccc-cccHHhh
Q 000713 1309 ELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LF-sGTIrE~ 1325 (1335)
|.|.|...|| .-||.||
T Consensus 80 GmVFQ~fnLFPHlTvleN 97 (240)
T COG1126 80 GMVFQQFNLFPHLTVLEN 97 (240)
T ss_pred CeecccccccccchHHHH
Confidence 9999999999 7899987
No 446
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.2e-16 Score=174.76 Aligned_cols=89 Identities=22% Similarity=0.388 Sum_probs=83.2
Q ss_pred EEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------
Q 000713 1237 VDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------- 1304 (1335)
|+++||+..|... .+.+|+|||++|++||..||+|++|||||||+.++-|+-+|++|+|.+||.|+..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999752 3579999999999999999999999999999999999999999999999999975
Q ss_pred cCCCceeeccccccc-ccHHhh
Q 000713 1305 DEPMELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFs-GTIrE~ 1325 (1335)
|++++++.|++.|++ -||.||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~N 103 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFEN 103 (339)
T ss_pred HhhccEEeccccccccchHHhh
Confidence 578999999999997 999997
No 447
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.64 E-value=3.1e-16 Score=168.03 Aligned_cols=89 Identities=28% Similarity=0.494 Sum_probs=81.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
|+++|++++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 57999999997543469999999999999999999999999999999999999999999999998853 4568999
Q ss_pred ecccccccccHHhh
Q 000713 1312 KREGSLFGQLVKEY 1325 (1335)
Q Consensus 1312 ~Qep~LFsGTIrE~ 1325 (1335)
+|++.+|.+|++||
T Consensus 81 ~q~~~~~~~tv~~~ 94 (178)
T cd03247 81 NQRPYLFDTTLRNN 94 (178)
T ss_pred ccCCeeecccHHHh
Confidence 99999999999998
No 448
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=6.6e-16 Score=180.22 Aligned_cols=93 Identities=24% Similarity=0.258 Sum_probs=82.6
Q ss_pred ccceEEEEEEEEEeCCC---CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----
Q 000713 1233 VVGKVDICDLQIRYRPD---SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----- 1304 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~---~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----- 1304 (1335)
....|+++|++++|... ..++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.|||.++..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 33469999999999643 2369999999999999999999999999999999999999999999999988743
Q ss_pred -----------------cCCCceeeccc--ccccccHHhh
Q 000713 1305 -----------------DEPMELMKREG--SLFGQLVKEY 1325 (1335)
Q Consensus 1305 -----------------~~~i~lV~Qep--~LFsGTIrE~ 1325 (1335)
++.+++|+|+| .+|.+||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~en 137 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHH
Confidence 34689999998 7999999997
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.63 E-value=5.1e-16 Score=176.24 Aligned_cols=93 Identities=33% Similarity=0.566 Sum_probs=85.4
Q ss_pred ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cC
Q 000713 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DE 1306 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~ 1306 (1335)
..|.|+++|++++|......+|+|+||+|+|||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 468899999999996543569999999999999999999999999999999999999999999999999864 35
Q ss_pred CCceeecccccccccHHhh
Q 000713 1307 PMELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1307 ~i~lV~Qep~LFsGTIrE~ 1325 (1335)
.+++++|+|.+|.+||+||
T Consensus 96 ~i~~v~q~~~l~~~tv~~n 114 (257)
T cd03288 96 RLSIILQDPILFSGSIRFN 114 (257)
T ss_pred hEEEECCCCcccccHHHHh
Confidence 6899999999999999987
No 450
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=5.3e-16 Score=172.03 Aligned_cols=92 Identities=40% Similarity=0.710 Sum_probs=84.4
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|.|+++|++++|+.+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 6799999999997544469999999999999999999999999999999999999999999999999853 4568
Q ss_pred ceeecccccccccHHhhH
Q 000713 1309 ELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~~ 1326 (1335)
++++|++.+|.+|++||.
T Consensus 81 ~~~~q~~~l~~~tv~enl 98 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNL 98 (221)
T ss_pred EEECCCCccccchHHHHh
Confidence 999999999999999974
No 451
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.63 E-value=6.2e-16 Score=164.96 Aligned_cols=89 Identities=27% Similarity=0.566 Sum_probs=81.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+++|++++|+.+..++++|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 57999999997544469999999999999999999999999999999999999999999999999864 457899
Q ss_pred eecccccccccHHhh
Q 000713 1311 MKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~ 1325 (1335)
++|++.+|.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~ 95 (173)
T cd03246 81 LPQDDELFSGSIAEN 95 (173)
T ss_pred ECCCCccccCcHHHH
Confidence 999999999999997
No 452
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.8e-15 Score=173.45 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEccCCCccccCCeEEEEeCC
Q 000713 752 NLSGGQKQRIQLARALYQ----DADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKVVLLVTHQVDFLPAFDSVLLMSDG 827 (1335)
Q Consensus 752 ~LSGGQkqRv~LARAl~~----~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G 827 (1335)
+||||||||++||++++. +|+++++|||+++||+.....+.+.+.. ..++.|+|++||+++....+|+++.|++|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~-~~~~~tii~isH~~~~~~~~d~~~~l~~~ 248 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE-LSRSHQVLCITHLPQVAAMADNHFLVEKE 248 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH-HhCCCEEEEEechHHHHHhcCcEEEEEEe
Confidence 499999999999997643 9999999999999999999998876544 44578999999999977789999999876
Q ss_pred e
Q 000713 828 E 828 (1335)
Q Consensus 828 ~ 828 (1335)
.
T Consensus 249 ~ 249 (276)
T cd03241 249 V 249 (276)
T ss_pred c
Confidence 4
No 453
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=7.5e-16 Score=177.52 Aligned_cols=91 Identities=24% Similarity=0.399 Sum_probs=81.7
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++||+++|.++. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 369999999999999999999999999999999999999999999999999853
Q ss_pred --cCCCceeeccc--ccccccHHhhH
Q 000713 1305 --DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++.+++++|+| .+|..||+||.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i 107 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREI 107 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHH
Confidence 35689999998 69999999973
No 454
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.62 E-value=4e-16 Score=161.21 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=82.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+|+||+.+|..+ +++|+||||+|++||-+=++|++||||||++++|+|...|+.|+|.++|.|++. |++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 8999999999877 779999999999999999999999999999999999999999999999999985 578
Q ss_pred Cceeecccccc-cccHHhh
Q 000713 1308 MELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LF-sGTIrE~ 1325 (1335)
||+|.||--|. +-||.||
T Consensus 81 IGvVFQD~rLL~~~tvyeN 99 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYEN 99 (223)
T ss_pred eeeEeeeccccccchHhhh
Confidence 99999998865 7899987
No 455
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.62 E-value=7.8e-16 Score=170.58 Aligned_cols=90 Identities=22% Similarity=0.362 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
|+++||+++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.+++. ++.++++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 57999999996432469999999999999999999999999999999999999999999999999864 3568999
Q ss_pred ecccccc-cccHHhhH
Q 000713 1312 KREGSLF-GQLVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LF-sGTIrE~~ 1326 (1335)
+|++.+| +.|++||.
T Consensus 81 ~q~~~~~~~~tv~~~l 96 (220)
T cd03263 81 PQFDALFDELTVREHL 96 (220)
T ss_pred cCcCCccccCCHHHHH
Confidence 9999999 68999973
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.62 E-value=7.8e-16 Score=170.12 Aligned_cols=90 Identities=19% Similarity=0.344 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|..+..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 78999999996543469999999999999999999999999999999999999999999999999853 346
Q ss_pred Cceeeccccccc-ccHHhhH
Q 000713 1308 MELMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~~ 1326 (1335)
+++++|++.+|. .||+||.
T Consensus 82 i~~~~q~~~~~~~~tv~e~l 101 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNV 101 (216)
T ss_pred ceEEecCccccccccHHHHH
Confidence 899999999986 5999973
No 457
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.62 E-value=4.9e-16 Score=167.03 Aligned_cols=87 Identities=30% Similarity=0.465 Sum_probs=82.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+|+||+.+|. ...+++|+||+|++||-+.++|+|||||||++..+-|++||++|+|+|||.||+. |..||+
T Consensus 2 I~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 79999999997 3459999999999999999999999999999999999999999999999999996 678999
Q ss_pred eecccccc-cccHHhh
Q 000713 1311 MKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LF-sGTIrE~ 1325 (1335)
|-|...|| .-||.||
T Consensus 80 viQqigLFPh~Tv~eN 95 (309)
T COG1125 80 VIQQIGLFPHLTVAEN 95 (309)
T ss_pred hhhhcccCCCccHHHH
Confidence 99999999 8999997
No 458
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.61 E-value=9.2e-16 Score=169.77 Aligned_cols=89 Identities=29% Similarity=0.400 Sum_probs=80.2
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----------
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------- 1304 (1335)
|+++||+++|.++. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996431 469999999999999999999999999999999999999999999999999864
Q ss_pred cCCCceeecccccccc-cHHhh
Q 000713 1305 DEPMELMKREGSLFGQ-LVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep~LFsG-TIrE~ 1325 (1335)
+..+++++|++.+|.+ ||+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~ 102 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALEN 102 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHH
Confidence 2468999999999976 99997
No 459
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.4e-15 Score=175.44 Aligned_cols=90 Identities=29% Similarity=0.469 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++||+++|.+.. .++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.+++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 389999999996432 369999999999999999999999999999999999999999999999999864
Q ss_pred cCCCceeeccc--ccccccHHhh
Q 000713 1305 DEPMELMKREG--SLFGQLVKEY 1325 (1335)
Q Consensus 1305 ~~~i~lV~Qep--~LFsGTIrE~ 1325 (1335)
+..+++++|+| .+|..||+|+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~ 104 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKD 104 (287)
T ss_pred hhceEEEecCchhccccccHHHH
Confidence 35689999998 5889999997
No 460
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.61 E-value=1.1e-15 Score=167.54 Aligned_cols=82 Identities=26% Similarity=0.435 Sum_probs=77.0
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeec
Q 000713 1237 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKR 1313 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Q 1313 (1335)
|+++||+++|.+.. +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+|| .+++++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------~i~~~~q 73 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------SIAYVSQ 73 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------EEEEEec
Confidence 57999999997542 4699999999999999999999999999999999999999999999999 6899999
Q ss_pred ccccccccHHhh
Q 000713 1314 EGSLFGQLVKEY 1325 (1335)
Q Consensus 1314 ep~LFsGTIrE~ 1325 (1335)
+|.+|++|++||
T Consensus 74 ~~~l~~~t~~en 85 (204)
T cd03250 74 EPWIQNGTIREN 85 (204)
T ss_pred CchhccCcHHHH
Confidence 999999999997
No 461
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.61 E-value=1.5e-15 Score=168.09 Aligned_cols=90 Identities=27% Similarity=0.385 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCc
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~ 1309 (1335)
|+++||+++|.... +++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 68999999996431 269999999999999999999999999999999999999999999999999864 35789
Q ss_pred eeecccccccc-cHHhhH
Q 000713 1310 LMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++|++.+|.+ ||+||.
T Consensus 82 ~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 82 FVSDSTGLYDRLTARENL 99 (218)
T ss_pred EecCCcccCcCCCHHHHH
Confidence 99999999985 999983
No 462
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.60 E-value=1.3e-15 Score=170.89 Aligned_cols=90 Identities=33% Similarity=0.655 Sum_probs=82.0
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
|+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.|+.. ++.+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 57999999997544569999999999999999999999999999999999999999999999999864 346899
Q ss_pred eecccccccccHHhhH
Q 000713 1311 MKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~~ 1326 (1335)
++|++.+|..||+||.
T Consensus 81 ~~q~~~~~~~tv~~nl 96 (237)
T cd03252 81 VLQENVLFNRSIRDNI 96 (237)
T ss_pred EcCCchhccchHHHHh
Confidence 9999999999999973
No 463
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.60 E-value=1e-15 Score=169.75 Aligned_cols=87 Identities=30% Similarity=0.489 Sum_probs=80.1
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcC------CCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDE------PME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~------~i~ 1309 (1335)
.++++|++++|. ..++|+||||+|++||.++|+||+|||||||+++|.|+..|.+|+|.+||.||...+ .++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 478999999996 446999999999999999999999999999999999999999999999999998753 789
Q ss_pred eeeccc-ccccccHHh
Q 000713 1310 LMKREG-SLFGQLVKE 1324 (1335)
Q Consensus 1310 lV~Qep-~LFsGTIrE 1324 (1335)
+|||++ .-|.-||+|
T Consensus 80 ~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 80 YVPQSPSAPFGLTVYE 95 (258)
T ss_pred EeccCCCCCCCcEEee
Confidence 999995 678889988
No 464
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.8e-15 Score=169.22 Aligned_cols=91 Identities=26% Similarity=0.342 Sum_probs=81.6
Q ss_pred eEEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCc--------
Q 000713 1236 KVDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD-------- 1305 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~-------- 1305 (1335)
-++++||+++|..+. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999996432 4699999999999999999999999999999999999999999999999998642
Q ss_pred --CCCceeecccccccc-cHHhhH
Q 000713 1306 --EPMELMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1306 --~~i~lV~Qep~LFsG-TIrE~~ 1326 (1335)
+.+++++|++.+|.+ ||+||.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l 108 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENV 108 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHH
Confidence 458999999999965 999983
No 465
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.60 E-value=3.7e-16 Score=173.00 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=106.5
Q ss_pred CCceeeeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcCCCCCCcEEEEcCeEE-EEecCCcCCCCCHHHHhccCCCCChHH
Q 000713 643 KPTMRNISLEVRPGQKVAICGEVGSGKSTLLAAILGEVPHTQGTIQVYGKTA-YVSQTAWIQTGSIRENILFGSPMDSHQ 721 (1335)
Q Consensus 643 ~~~L~~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~~~~~~G~i~v~g~~a-yv~Q~~~i~~~Tv~eNIlfg~~~~~~~ 721 (1335)
+.+.+|++++.++|++++|.|||||||||+++.+.= +.+-.++| |||.+... ..+.|.
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~--------~~~la~~g~~vpa~~~~--~~~~~~----------- 75 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV--------IVLMAQIGCFVPCDSAD--IPIVDC----------- 75 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH--------HHHHHHhCCCcCcccEE--Eeccce-----------
Confidence 468999999999999999999999999999999871 11111222 44443210 001111
Q ss_pred HHHHHHHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHHHHHHHHHH
Q 000713 722 YQETLERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARAL--YQDADIYLLDDP---FSAVDAHTASSLFNDYV 796 (1335)
Q Consensus 722 ~~~~~~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl--~~~~~ilLLDEP---~saLD~~~~~~i~~~~~ 796 (1335)
+++..++. |. ...++|.|++|+..+++++ ..+|+++||||| |+++|+.......-+.+
T Consensus 76 ---il~~~~l~---------d~-----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 76 ---ILARVGAS---------DS-----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ---eEeeeccc---------cc-----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 11111111 11 1346999999999999999 899999999999 88899987754431222
Q ss_pred HHHcCCCEEEEEccCCCccccCCeEEEEeCCeEEEecC
Q 000713 797 MEALSGKVVLLVTHQVDFLPAFDSVLLMSDGEILRAAP 834 (1335)
Q Consensus 797 ~~~~~~~TvIlvTH~~~~l~~~D~iivl~~G~i~~~g~ 834 (1335)
.. ..+.++|++||+.+....+|++..+++|++...++
T Consensus 139 ~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 139 AT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred Hh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 11 34789999999755556689999999999976553
No 466
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.60 E-value=1.7e-15 Score=167.05 Aligned_cols=88 Identities=23% Similarity=0.377 Sum_probs=79.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|..+ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4789999999643 459999999999999999999999999999999999999999999999999864 246
Q ss_pred Cceeeccccccc-ccHHhh
Q 000713 1308 MELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~ 1325 (1335)
+++++|++.+|. .|++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~ 98 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYEN 98 (214)
T ss_pred eEEEecCchhccCCcHHHH
Confidence 899999999997 599997
No 467
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.60 E-value=2.2e-15 Score=176.80 Aligned_cols=90 Identities=20% Similarity=0.364 Sum_probs=81.8
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1237 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1237 I~f~nv~~rY~~~--~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
|+++||+++|+.+ ..+||+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.. +
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 2469999999999999999999999999999999999999999999999999964 4
Q ss_pred CCCceeecccccc-cccHHhhH
Q 000713 1306 EPMELMKREGSLF-GQLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LF-sGTIrE~~ 1326 (1335)
+.+++++|++.|| +.||+||.
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni 103 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNV 103 (343)
T ss_pred cCEEEEECCccccccCcHHHHH
Confidence 5799999999999 48999983
No 468
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.3e-15 Score=173.63 Aligned_cols=90 Identities=26% Similarity=0.390 Sum_probs=81.3
Q ss_pred EEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------
Q 000713 1237 VDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------- 1304 (1335)
|+++||+++|.++. +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997543 259999999999999999999999999999999999999999999999999852
Q ss_pred -cCCCceeeccc--ccccccHHhhH
Q 000713 1305 -DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
+..+++|+|+| .+|..||.|+.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l 106 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDV 106 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHH
Confidence 34689999998 79999999973
No 469
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.59 E-value=1.9e-15 Score=160.08 Aligned_cols=84 Identities=23% Similarity=0.312 Sum_probs=77.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCcCCCceeecccc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYDEPMELMKREGS 1316 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~~~i~lV~Qep~ 1316 (1335)
|+++|++++|+.+ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||. +.+++++|++.
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----~~i~~~~q~~~ 74 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----EDLLFLPQRPY 74 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----ceEEEECCCCc
Confidence 5799999999644 45999999999999999999999999999999999999999999999984 67899999999
Q ss_pred cccccHHhhH
Q 000713 1317 LFGQLVKEYW 1326 (1335)
Q Consensus 1317 LFsGTIrE~~ 1326 (1335)
+|++|++||.
T Consensus 75 ~~~~tv~~nl 84 (166)
T cd03223 75 LPLGTLREQL 84 (166)
T ss_pred cccccHHHHh
Confidence 9999999984
No 470
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.59 E-value=1.8e-15 Score=167.86 Aligned_cols=88 Identities=27% Similarity=0.467 Sum_probs=79.8
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-------cCCCc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------~~~i~ 1309 (1335)
|+++||+++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 579999999963 359999999999999999999999999999999999999999999999998864 24589
Q ss_pred eeecccccccc-cHHhhH
Q 000713 1310 LMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++|++.+|.+ |++||.
T Consensus 79 ~~~q~~~~~~~~t~~~~l 96 (222)
T cd03224 79 YVPEGRRIFPELTVEENL 96 (222)
T ss_pred EeccccccCCCCcHHHHH
Confidence 99999999986 999973
No 471
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.8e-15 Score=166.87 Aligned_cols=88 Identities=28% Similarity=0.413 Sum_probs=79.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----cCCCceee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELMK 1312 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----~~~i~lV~ 1312 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|++. +..+++++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEc
Confidence 578999999964 459999999999999999999999999999999999999999999999999864 34689999
Q ss_pred ccccccc-ccHHhhH
Q 000713 1313 REGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1313 Qep~LFs-GTIrE~~ 1326 (1335)
|++.+|. .||+|+.
T Consensus 79 q~~~~~~~~tv~~~l 93 (213)
T cd03259 79 QDYALFPHLTVAENI 93 (213)
T ss_pred CchhhccCCcHHHHH
Confidence 9999985 6999984
No 472
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.59 E-value=1.8e-15 Score=168.35 Aligned_cols=94 Identities=29% Similarity=0.494 Sum_probs=84.8
Q ss_pred ccceEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------c
Q 000713 1233 VVGKVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------D 1305 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~ 1305 (1335)
..|.++++|++++|... ..++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++.. +
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 46789999999999642 2369999999999999999999999999999999999999999999999998854 3
Q ss_pred CCCceeecccccccccHHhhH
Q 000713 1306 EPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+.+++++|++.+|.+||+||.
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl 108 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNI 108 (226)
T ss_pred hhEEEEecccHHHhhhHHHHh
Confidence 568999999999999999974
No 473
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.1e-15 Score=169.59 Aligned_cols=89 Identities=33% Similarity=0.500 Sum_probs=81.4
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.++++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. +..++
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 4899999999953 359999999999999999999999999999999999999999999999999864 34689
Q ss_pred eeecccccccccHHhhH
Q 000713 1310 LMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep~LFsGTIrE~~ 1326 (1335)
+++|++.+|.+||+||.
T Consensus 81 ~~~q~~~~~~~tv~e~l 97 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNI 97 (241)
T ss_pred EEecCchhchhhHHHHH
Confidence 99999999999999983
No 474
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.59 E-value=1.7e-15 Score=168.72 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=80.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhcc-----CCCCCeEEECCeecCC-------
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLI-----EPARGKILVDGKLAEY------- 1304 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~-----e~~~G~I~IDGvdI~~------- 1304 (1335)
|+++||+++|+. .++|+|+||+|++||++||+|++|||||||+++|.|++ .|++|+|.+||.++..
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 578999999964 25999999999999999999999999999999999999 9999999999999854
Q ss_pred -cCCCceeecccccccccHHhhH
Q 000713 1305 -DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|++.+|..||+||.
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l 101 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNV 101 (227)
T ss_pred HHhhEEEEecCchhccccHHHHH
Confidence 2468999999999999999983
No 475
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.1e-15 Score=168.97 Aligned_cols=88 Identities=30% Similarity=0.509 Sum_probs=79.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 578999999953 359999999999999999999999999999999999999999999999998754 345
Q ss_pred Cceeecccccccc-cHHhhH
Q 000713 1308 MELMKREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1308 i~lV~Qep~LFsG-TIrE~~ 1326 (1335)
+++++|++.+|.+ ||+||.
T Consensus 79 i~~v~q~~~~~~~~tv~~~l 98 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENV 98 (235)
T ss_pred eEEEccCcccCCCCcHHHHH
Confidence 8999999999986 999973
No 476
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.4e-15 Score=172.30 Aligned_cols=90 Identities=28% Similarity=0.453 Sum_probs=81.8
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
-|+++|++++|+.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 48999999999633 359999999999999999999999999999999999999999999999999864 35689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .+|..||+||.
T Consensus 83 ~v~q~~~~~~~~~tv~e~l 101 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDV 101 (274)
T ss_pred EEecChhhhhccCcHHHHH
Confidence 999998 68999999984
No 477
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.6e-15 Score=166.50 Aligned_cols=90 Identities=24% Similarity=0.371 Sum_probs=80.9
Q ss_pred EEEEEEEEEeCCCC--CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-cCCCceeec
Q 000713 1237 VDICDLQIRYRPDS--PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-DEPMELMKR 1313 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~--~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-~~~i~lV~Q 1313 (1335)
|+++|++++|.... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ...+++++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 57899999996421 469999999999999999999999999999999999999999999999999864 356899999
Q ss_pred cccccc-ccHHhhH
Q 000713 1314 EGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1314 ep~LFs-GTIrE~~ 1326 (1335)
++.+|. .|++||.
T Consensus 81 ~~~~~~~~tv~e~l 94 (220)
T cd03293 81 QDALLPWLTVLDNV 94 (220)
T ss_pred ccccccCCCHHHHH
Confidence 999997 7999973
No 478
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=1.8e-15 Score=162.37 Aligned_cols=89 Identities=27% Similarity=0.514 Sum_probs=82.7
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
-.|++++|+++|.. ..||+||||+|++||..||+|++|||||||+.++.++..|++|+|.|||.||.. +
T Consensus 7 ~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 7 PLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred ceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 36999999999953 469999999999999999999999999999999999999999999999999975 4
Q ss_pred CCCceeecccccc-cccHHhh
Q 000713 1306 EPMELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1306 ~~i~lV~Qep~LF-sGTIrE~ 1325 (1335)
++++++.|...|| +-||.||
T Consensus 85 ~r~GvlFQ~gALFssltV~eN 105 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFEN 105 (263)
T ss_pred hheeEEeeccccccccchhHh
Confidence 6799999999999 5799998
No 479
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.3e-15 Score=168.40 Aligned_cols=90 Identities=26% Similarity=0.412 Sum_probs=80.9
Q ss_pred EEEEEEEEEeCCC--CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------c
Q 000713 1237 VDICDLQIRYRPD--SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------D 1305 (1335)
Q Consensus 1237 I~f~nv~~rY~~~--~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~ 1305 (1335)
|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. +
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999643 1269999999999999999999999999999999999999999999999999864 3
Q ss_pred CCCceeeccccccc-ccHHhhH
Q 000713 1306 EPMELMKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1306 ~~i~lV~Qep~LFs-GTIrE~~ 1326 (1335)
+.+++++|++.+|. .|++||.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l 103 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENV 103 (233)
T ss_pred hheEEEccCcccCCCCcHHHHH
Confidence 56899999999996 6999983
No 480
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=2.3e-15 Score=167.94 Aligned_cols=90 Identities=31% Similarity=0.547 Sum_probs=82.5
Q ss_pred ceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1235 GKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1235 G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
|.|+++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.++..|++|+|.+||.++.. ++.+
T Consensus 1 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 1 GEIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred CeEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 579999999999633 359999999999999999999999999999999999999999999999999864 3568
Q ss_pred ceeecccccccccHHhh
Q 000713 1309 ELMKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFsGTIrE~ 1325 (1335)
++++|++.+|.+|++||
T Consensus 80 ~~~~q~~~~~~~tv~~~ 96 (229)
T cd03254 80 GVVLQDTFLFSGTIMEN 96 (229)
T ss_pred EEecCCchhhhhHHHHH
Confidence 99999999999999987
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.59 E-value=7.4e-16 Score=168.60 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=103.5
Q ss_pred eeeeEeeCCcEEEEEcCCCCCHHHHHHHHhcC-CCCCCcEEEEcCeEEEEecCCcCCCCCHHHHhccCCCCChHHHHHHH
Q 000713 648 NISLEVRPGQKVAICGEVGSGKSTLLAAILGE-VPHTQGTIQVYGKTAYVSQTAWIQTGSIRENILFGSPMDSHQYQETL 726 (1335)
Q Consensus 648 ~isl~i~~G~~v~IvG~~GsGKSTLL~~ilG~-~~~~~G~i~v~g~~ayv~Q~~~i~~~Tv~eNIlfg~~~~~~~~~~~~ 726 (1335)
..++++.+|++++|+|||||||||||++|.+. +....|. |+|....- ....+++.
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~--------~~~~~~~~--i~~~dqi~-------------- 76 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGC--------FVPAESAS--IPLVDRIF-------------- 76 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCC--------Cccccccc--cCCcCEEE--------------
Confidence 34566678999999999999999999999943 2222221 22221000 00001111
Q ss_pred HHhccHHHHhhCCCCCCccccCCCCCCCHHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEE
Q 000713 727 ERCSLIKDLELLPYGDNTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTASSLFNDYVME-ALSGKVV 805 (1335)
Q Consensus 727 ~~~~l~~dl~~l~~gd~t~ig~~g~~LSGGQkqRv~LARAl~~~~~ilLLDEP~saLD~~~~~~i~~~~~~~-~~~~~Tv 805 (1335)
..++..+ .+.+....+++++|| ++.+.+...+|+++|+|||++++|+..+..+...+++. ..++.++
T Consensus 77 ---------~~~~~~d--~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~v 144 (202)
T cd03243 77 ---------TRIGAED--SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRT 144 (202)
T ss_pred ---------EEecCcc--cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 1111111 122344567777775 66667888999999999999999999888876655543 3458899
Q ss_pred EEEccCCCccccCCeEEEEeCCeEEEecCh
Q 000713 806 LLVTHQVDFLPAFDSVLLMSDGEILRAAPY 835 (1335)
Q Consensus 806 IlvTH~~~~l~~~D~iivl~~G~i~~~g~~ 835 (1335)
|++||+.+....+|++..+++|++...+..
T Consensus 145 i~~tH~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (202)
T cd03243 145 LFATHFHELADLPEQVPGVKNLHMEELITT 174 (202)
T ss_pred EEECChHHHHHHhhcCCCeEEEEEEEEecC
Confidence 999999999888999999999999877654
No 482
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.2e-15 Score=170.08 Aligned_cols=92 Identities=23% Similarity=0.343 Sum_probs=82.6
Q ss_pred ccceEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC---
Q 000713 1233 VVGKVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY--- 1304 (1335)
Q Consensus 1233 ~~G~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~--- 1304 (1335)
..|.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++..
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 3578999999999963 359999999999999999999999999999999999987 589999999999842
Q ss_pred -----cCCCceeecccccccccHHhhH
Q 000713 1305 -----DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 -----~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
++.+++++|++.+|..||+||.
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl 114 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNI 114 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHH
Confidence 3568999999999999999983
No 483
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.9e-15 Score=161.69 Aligned_cols=89 Identities=25% Similarity=0.421 Sum_probs=80.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DE 1306 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~ 1306 (1335)
.|+++||+.+|+ +...+|+||||+|++||.|+|+|++|||||||+.+|-|+++|++|+|.++|.++.. |.
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 489999999997 44569999999999999999999999999999999999999999999999999985 46
Q ss_pred CCceeecccccc-cccHHhh
Q 000713 1307 PMELMKREGSLF-GQLVKEY 1325 (1335)
Q Consensus 1307 ~i~lV~Qep~LF-sGTIrE~ 1325 (1335)
++|.+.|.+.|- .-||-+|
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~N 101 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLEN 101 (258)
T ss_pred hceeEeccCCcccccHHHHH
Confidence 899999999987 4666664
No 484
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.59 E-value=3e-15 Score=165.21 Aligned_cols=88 Identities=22% Similarity=0.369 Sum_probs=79.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
++++|++++|..+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999533 459999999999999999999999999999999999999999999999999863 246
Q ss_pred Cceeeccccccc-ccHHhh
Q 000713 1308 MELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~LFs-GTIrE~ 1325 (1335)
+++++|+|.+|. .|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~ 99 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYEN 99 (214)
T ss_pred eEEEecChhhccCCcHHHH
Confidence 899999999995 799997
No 485
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=3e-15 Score=171.94 Aligned_cols=91 Identities=26% Similarity=0.412 Sum_probs=82.2
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.++++||+++|+...+++|+|+||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.|+.. +..++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 489999999996544569999999999999999999999999999999999999999999999999864 34689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .+|+.||+||.
T Consensus 85 ~~~q~~~~~~~~~tv~enl 103 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDV 103 (279)
T ss_pred EEEeCHHHhcccccHHHHH
Confidence 999998 57788999984
No 486
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.8e-15 Score=169.14 Aligned_cols=89 Identities=18% Similarity=0.301 Sum_probs=80.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC---CCCCeEEECCeecCC------cC
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE---PARGKILVDGKLAEY------DE 1306 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e---~~~G~I~IDGvdI~~------~~ 1306 (1335)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.|+.. +.
T Consensus 2 ~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 79 (246)
T PRK14269 2 IAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79 (246)
T ss_pred ceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhh
Confidence 4789999999953 469999999999999999999999999999999999985 689999999999864 34
Q ss_pred CCceeecccccccccHHhhH
Q 000713 1307 PMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1307 ~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
.+++++|++.+|..||+||.
T Consensus 80 ~i~~~~q~~~l~~~tv~eni 99 (246)
T PRK14269 80 NVGMVFQQPNVFVKSIYENI 99 (246)
T ss_pred hEEEEecCCccccccHHHHh
Confidence 68999999999999999983
No 487
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.3e-15 Score=170.94 Aligned_cols=91 Identities=23% Similarity=0.435 Sum_probs=81.7
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCc
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPME 1309 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~ 1309 (1335)
.|+++|++++|..+..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 599999999996444569999999999999999999999999999999999999999999999999863 34689
Q ss_pred eeeccc--ccccccHHhhH
Q 000713 1310 LMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1310 lV~Qep--~LFsGTIrE~~ 1326 (1335)
+++|+| .++..||+||.
T Consensus 87 ~v~q~~~~~~~~~tv~enl 105 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDI 105 (271)
T ss_pred EEEeCHHHhcCcccHHHHH
Confidence 999998 46688999983
No 488
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.5e-15 Score=159.16 Aligned_cols=88 Identities=33% Similarity=0.512 Sum_probs=79.7
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-----cCCCcee
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-----DEPMELM 1311 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-----~~~i~lV 1311 (1335)
++++|++++|.. . ++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++++
T Consensus 1 l~~~~l~~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-K-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-e-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEE
Confidence 478999999963 3 59999999999999999999999999999999999999999999999998853 3568999
Q ss_pred ecccccccc-cHHhhH
Q 000713 1312 KREGSLFGQ-LVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LFsG-TIrE~~ 1326 (1335)
+|++.+|.+ |++|+.
T Consensus 79 ~q~~~~~~~~tv~~~~ 94 (173)
T cd03230 79 PEEPSLYENLTVRENL 94 (173)
T ss_pred ecCCccccCCcHHHHh
Confidence 999999986 999984
No 489
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.7e-14 Score=164.84 Aligned_cols=88 Identities=19% Similarity=0.219 Sum_probs=65.5
Q ss_pred CCCCCCccccCCCC----CCCHHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCE
Q 000713 738 LPYGDNTEIGERGV----NLSGGQKQRIQLARALY---------QDADIYLLDDPFSAVDAHTASSLFNDYVMEALSGKV 804 (1335)
Q Consensus 738 l~~gd~t~ig~~g~----~LSGGQkqRv~LARAl~---------~~~~ilLLDEP~saLD~~~~~~i~~~~~~~~~~~~T 804 (1335)
-|+.|+..+.-.+. .+|+||||++++||+++ .+|+++|+|||+++||++.++.+.+.+.+. + .
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q 240 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-Q 240 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-C
Confidence 35555544332332 48999999999999984 799999999999999999999888755431 2 4
Q ss_pred EEEEccCCCcccc-C---CeEEEEeCCeE
Q 000713 805 VLLVTHQVDFLPA-F---DSVLLMSDGEI 829 (1335)
Q Consensus 805 vIlvTH~~~~l~~-~---D~iivl~~G~i 829 (1335)
+++++|+.+.+.. + ++++.+++|+|
T Consensus 241 ~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 241 TFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEEeCCchhccchhccCccEEEEeCcEE
Confidence 5666666555443 4 78999999986
No 490
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.9e-15 Score=167.25 Aligned_cols=89 Identities=25% Similarity=0.388 Sum_probs=80.6
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC----cCCCcee
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY----DEPMELM 1311 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~----~~~i~lV 1311 (1335)
.|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.. ++.++++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 3789999999953 459999999999999999999999999999999999999999999999999864 3468999
Q ss_pred eccccccc-ccHHhhH
Q 000713 1312 KREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1312 ~Qep~LFs-GTIrE~~ 1326 (1335)
+|+|.+|. .||+|+.
T Consensus 80 ~q~~~~~~~~tv~e~l 95 (239)
T cd03296 80 FQHYALFRHMTVFDNV 95 (239)
T ss_pred ecCCcccCCCCHHHHH
Confidence 99999995 6999973
No 491
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.58 E-value=2.8e-15 Score=167.97 Aligned_cols=87 Identities=25% Similarity=0.379 Sum_probs=79.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC-------cCCCc
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------DEPME 1309 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------~~~i~ 1309 (1335)
++++|++++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. +..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 478999999963 359999999999999999999999999999999999999999999999999864 24589
Q ss_pred eeecccccccc-cHHhh
Q 000713 1310 LMKREGSLFGQ-LVKEY 1325 (1335)
Q Consensus 1310 lV~Qep~LFsG-TIrE~ 1325 (1335)
+++|++.+|.+ ||+|+
T Consensus 79 ~v~q~~~l~~~~tv~~~ 95 (236)
T cd03219 79 RTFQIPRLFPELTVLEN 95 (236)
T ss_pred EEecccccccCCCHHHH
Confidence 99999999986 99997
No 492
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.58 E-value=2.6e-15 Score=164.60 Aligned_cols=88 Identities=28% Similarity=0.474 Sum_probs=78.7
Q ss_pred EEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---cCCCceeecc
Q 000713 1238 DICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---DEPMELMKRE 1314 (1335)
Q Consensus 1238 ~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---~~~i~lV~Qe 1314 (1335)
+++|++++|..+ .++|+|+||+|++||++||+|++|||||||+++|.+++.|++|+|.+||.++.. ++.+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 468999999642 459999999999999999999999999999999999999999999999999853 3568999999
Q ss_pred c--ccccccHHhhH
Q 000713 1315 G--SLFGQLVKEYW 1326 (1335)
Q Consensus 1315 p--~LFsGTIrE~~ 1326 (1335)
| .+|..|++||.
T Consensus 80 ~~~~~~~~tv~e~l 93 (205)
T cd03226 80 VDYQLFTDSVREEL 93 (205)
T ss_pred hhhhhhhccHHHHH
Confidence 8 47899999984
No 493
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=3.9e-15 Score=158.57 Aligned_cols=89 Identities=33% Similarity=0.546 Sum_probs=81.1
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
++++|++++|....+.+|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.++.. ++.+++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 47899999996543469999999999999999999999999999999999999999999999999864 346899
Q ss_pred eecccccccccHHhh
Q 000713 1311 MKREGSLFGQLVKEY 1325 (1335)
Q Consensus 1311 V~Qep~LFsGTIrE~ 1325 (1335)
++|++.+|.+|+.||
T Consensus 81 ~~~~~~~~~~t~~e~ 95 (171)
T cd03228 81 VPQDPFLFSGTIREN 95 (171)
T ss_pred EcCCchhccchHHHH
Confidence 999999999999987
No 494
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.58 E-value=4e-15 Score=164.05 Aligned_cols=87 Identities=32% Similarity=0.448 Sum_probs=79.3
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------cCCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY--------DEPM 1308 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~--------~~~i 1308 (1335)
|+++||+++|.. .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 578999999964 359999999999999999999999999999999999999999999999999842 3568
Q ss_pred ceeeccccccc-ccHHhh
Q 000713 1309 ELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFs-GTIrE~ 1325 (1335)
++++|++.+|. .|++||
T Consensus 79 ~~~~q~~~~~~~~t~~e~ 96 (213)
T cd03262 79 GMVFQQFNLFPHLTVLEN 96 (213)
T ss_pred eEEecccccCCCCcHHHH
Confidence 99999999996 799997
No 495
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=4.5e-15 Score=159.13 Aligned_cols=87 Identities=30% Similarity=0.461 Sum_probs=78.9
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCCc--------CCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEYD--------EPM 1308 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~~--------~~i 1308 (1335)
|+++|++++|.. .++|+|+||+|++||.+||+|++|||||||+++|.++++|++|+|.+||.+++.. ..+
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 579999999953 3599999999999999999999999999999999999999999999999988642 468
Q ss_pred ceeeccccccc-ccHHhh
Q 000713 1309 ELMKREGSLFG-QLVKEY 1325 (1335)
Q Consensus 1309 ~lV~Qep~LFs-GTIrE~ 1325 (1335)
++++|+|.+|. .|++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~ 96 (178)
T cd03229 79 GMVFQDFALFPHLTVLEN 96 (178)
T ss_pred EEEecCCccCCCCCHHHh
Confidence 99999999985 599997
No 496
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=4.4e-15 Score=170.54 Aligned_cols=91 Identities=24% Similarity=0.463 Sum_probs=81.3
Q ss_pred eEEEEEEEEEeCCC-CCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCC
Q 000713 1236 KVDICDLQIRYRPD-SPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPM 1308 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~-~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i 1308 (1335)
.|+++||+++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999643 3459999999999999999999999999999999999999999999999999864 3568
Q ss_pred ceeeccc--ccccccHHhhH
Q 000713 1309 ELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1309 ~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++++|+| .++..||+||.
T Consensus 84 ~~v~q~~~~~~~~~tv~eni 103 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDV 103 (279)
T ss_pred eEEEcChHHhcccccHHHHH
Confidence 9999998 46788999974
No 497
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.1e-15 Score=168.44 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=80.3
Q ss_pred eEEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccC-----CCCCeEEECCeecCC------
Q 000713 1236 KVDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIE-----PARGKILVDGKLAEY------ 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e-----~~~G~I~IDGvdI~~------ 1304 (1335)
.|+++||+++|.+ .++|+|+||+|++||.+||+|++|||||||+++|.|+++ |++|+|.+||.++..
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 5999999999953 359999999999999999999999999999999999975 589999999999853
Q ss_pred --cCCCceeecccccccccHHhhH
Q 000713 1305 --DEPMELMKREGSLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep~LFsGTIrE~~ 1326 (1335)
+..+++++|++.+|.+||+||.
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl 107 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENV 107 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHH
Confidence 3568999999999999999973
No 498
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=4.4e-15 Score=171.50 Aligned_cols=91 Identities=22% Similarity=0.399 Sum_probs=81.3
Q ss_pred eEEEEEEEEEeCCCC---CCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC--------
Q 000713 1236 KVDICDLQIRYRPDS---PLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY-------- 1304 (1335)
Q Consensus 1236 ~I~f~nv~~rY~~~~---~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~-------- 1304 (1335)
.|+++|++++|.... .++|+||||+|++||.+||+|++|||||||+++|.|+.+|++|+|.+||.++..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 389999999996432 469999999999999999999999999999999999999999999999999852
Q ss_pred --cCCCceeeccc--ccccccHHhhH
Q 000713 1305 --DEPMELMKREG--SLFGQLVKEYW 1326 (1335)
Q Consensus 1305 --~~~i~lV~Qep--~LFsGTIrE~~ 1326 (1335)
++.+++++|+| .+|..||+||.
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni 107 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDI 107 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHH
Confidence 24689999998 68999999973
No 499
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=4e-15 Score=167.41 Aligned_cols=89 Identities=26% Similarity=0.418 Sum_probs=80.5
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC------cCCCce
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY------DEPMEL 1310 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~------~~~i~l 1310 (1335)
++++||+++|+++ .++|+|+||+|++||.+||+|++|||||||+++|.+++.|++|+|.+||.++.. +..+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4789999999753 459999999999999999999999999999999999999999999999999864 346899
Q ss_pred eeccccccc-ccHHhhH
Q 000713 1311 MKREGSLFG-QLVKEYW 1326 (1335)
Q Consensus 1311 V~Qep~LFs-GTIrE~~ 1326 (1335)
++|+|.+|. .||+||.
T Consensus 80 ~~q~~~~~~~~tv~e~l 96 (242)
T cd03295 80 VIQQIGLFPHMTVEENI 96 (242)
T ss_pred EccCccccCCCcHHHHH
Confidence 999999995 7999983
No 500
>PRK10908 cell division protein FtsE; Provisional
Probab=99.57 E-value=4.3e-15 Score=164.99 Aligned_cols=88 Identities=19% Similarity=0.338 Sum_probs=79.6
Q ss_pred EEEEEEEEEeCCCCCCccccceEEeeCCcEEEEEcCCCCcHHHHHHHHhhccCCCCCeEEECCeecCC---------cCC
Q 000713 1237 VDICDLQIRYRPDSPLVLKGISCTFEGGHKIGIVGRTGSGKTTLRGALFRLIEPARGKILVDGKLAEY---------DEP 1307 (1335)
Q Consensus 1237 I~f~nv~~rY~~~~~~VLk~is~~I~~GekVGIVGRTGSGKSTLi~aL~Rl~e~~~G~I~IDGvdI~~---------~~~ 1307 (1335)
|+++|++++|.++ ..+|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.|+.. ++.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999533 459999999999999999999999999999999999999999999999999864 346
Q ss_pred Cceeeccccc-ccccHHhh
Q 000713 1308 MELMKREGSL-FGQLVKEY 1325 (1335)
Q Consensus 1308 i~lV~Qep~L-FsGTIrE~ 1325 (1335)
+++++|+|.+ +..|++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~ 99 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDN 99 (222)
T ss_pred eEEEecCccccccccHHHH
Confidence 8999999987 57899997
Done!