Query 000714
Match_columns 1335
No_of_seqs 478 out of 3070
Neff 7.9
Searched_HMMs 46136
Date Mon Apr 1 22:32:11 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 1E-184 3E-189 1787.6 119.8 1307 10-1321 3-1311(2102)
2 PLN03200 cellulose synthase-in 100.0 2E-106 4E-111 1054.6 96.4 1173 22-1319 60-1436(2102)
3 KOG0166 Karyopherin (importin) 100.0 5.5E-32 1.2E-36 315.7 37.9 415 413-870 68-490 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 5.9E-31 1.3E-35 282.4 29.1 419 413-870 73-500 (526)
5 KOG4224 Armadillo repeat prote 100.0 2.1E-29 4.6E-34 272.6 28.7 439 198-774 49-496 (550)
6 KOG4224 Armadillo repeat prote 100.0 3E-29 6.6E-34 271.5 26.0 405 64-569 84-496 (550)
7 KOG0166 Karyopherin (importin) 100.0 3.6E-26 7.7E-31 267.2 36.3 403 198-646 68-487 (514)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.1E-24 2.4E-29 234.4 30.9 435 37-566 39-496 (526)
9 PF05804 KAP: Kinesin-associat 99.9 1.7E-19 3.7E-24 223.1 49.9 529 16-654 119-658 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.2E-18 2.7E-23 215.6 48.5 518 106-738 123-658 (708)
11 KOG1048 Neural adherens juncti 99.8 4.2E-19 9.2E-24 213.7 24.9 422 107-567 234-685 (717)
12 KOG1048 Neural adherens juncti 99.8 4.3E-17 9.3E-22 196.6 23.8 425 196-728 233-682 (717)
13 KOG2122 Beta-catenin-binding p 99.7 4.3E-16 9.4E-21 192.4 24.8 371 69-526 201-603 (2195)
14 KOG4199 Uncharacterized conser 99.7 1E-14 2.2E-19 158.3 28.6 370 22-490 61-451 (461)
15 KOG2122 Beta-catenin-binding p 99.7 1.2E-15 2.6E-20 188.5 20.4 362 35-484 207-603 (2195)
16 KOG4500 Rho/Rac GTPase guanine 99.6 5.4E-13 1.2E-17 149.1 31.5 433 385-822 57-524 (604)
17 KOG4500 Rho/Rac GTPase guanine 99.6 1.4E-12 3.1E-17 145.8 32.4 413 193-687 84-519 (604)
18 KOG4199 Uncharacterized conser 99.6 8.7E-13 1.9E-17 143.6 28.9 325 149-567 102-445 (461)
19 PF10508 Proteasom_PSMB: Prote 99.4 5.6E-10 1.2E-14 137.9 40.0 427 37-523 16-461 (503)
20 KOG2171 Karyopherin (importin) 99.4 3.1E-07 6.7E-12 116.0 62.1 540 66-646 5-595 (1075)
21 PF10508 Proteasom_PSMB: Prote 99.3 3.8E-09 8.3E-14 130.6 39.7 361 388-756 56-447 (503)
22 PF01602 Adaptin_N: Adaptin N 99.3 4E-09 8.7E-14 132.8 40.2 495 34-643 18-522 (526)
23 PRK09687 putative lyase; Provi 99.3 9.8E-11 2.1E-15 133.3 21.8 252 453-768 23-279 (280)
24 PRK09687 putative lyase; Provi 99.3 2.7E-10 5.9E-15 129.7 22.8 251 371-682 25-277 (280)
25 KOG1293 Proteins containing ar 99.3 6.4E-09 1.4E-13 123.5 32.6 486 206-738 19-541 (678)
26 PRK13800 putative oxidoreducta 99.2 1.5E-09 3.2E-14 143.5 29.9 276 410-767 620-895 (897)
27 KOG1222 Kinesin associated pro 99.2 1.3E-08 2.7E-13 115.7 32.0 416 12-492 250-673 (791)
28 KOG1293 Proteins containing ar 99.2 1.9E-08 4.1E-13 119.6 34.0 455 115-654 18-542 (678)
29 KOG1222 Kinesin associated pro 99.2 1.1E-08 2.4E-13 116.2 30.3 387 173-655 282-673 (791)
30 PF01602 Adaptin_N: Adaptin N 99.2 2.2E-08 4.8E-13 126.1 37.3 467 201-774 9-486 (526)
31 PF04826 Arm_2: Armadillo-like 99.2 8.9E-10 1.9E-14 122.7 20.4 195 449-688 8-206 (254)
32 KOG2171 Karyopherin (importin) 99.2 1.8E-07 3.9E-12 118.1 42.6 486 198-755 6-529 (1075)
33 PRK13800 putative oxidoreducta 99.2 4E-09 8.6E-14 139.5 29.4 276 238-642 621-896 (897)
34 cd00020 ARM Armadillo/beta-cat 99.1 1.8E-09 3.8E-14 106.8 14.9 117 449-565 3-119 (120)
35 PF04826 Arm_2: Armadillo-like 99.1 1.4E-08 3.1E-13 113.2 21.9 190 371-567 14-206 (254)
36 cd00020 ARM Armadillo/beta-cat 99.0 3E-09 6.5E-14 105.2 13.7 118 407-524 3-120 (120)
37 PTZ00429 beta-adaptin; Provisi 99.0 1.1E-05 2.4E-10 102.7 46.6 432 195-730 31-471 (746)
38 KOG2023 Nuclear transport rece 99.0 3.8E-07 8.2E-12 108.0 30.4 628 64-774 127-820 (885)
39 PTZ00429 beta-adaptin; Provisi 98.9 8.2E-06 1.8E-10 103.9 42.6 397 68-568 108-509 (746)
40 KOG0168 Putative ubiquitin fus 98.9 6.1E-07 1.3E-11 108.8 29.4 249 209-549 181-438 (1051)
41 KOG1824 TATA-binding protein-i 98.9 0.001 2.2E-08 82.6 54.2 968 110-1318 9-1042(1233)
42 KOG1241 Karyopherin (importin) 98.8 5.5E-05 1.2E-09 91.8 41.0 636 32-800 11-693 (859)
43 KOG2023 Nuclear transport rece 98.8 1.3E-05 2.8E-10 95.4 32.6 560 107-772 129-733 (885)
44 KOG0213 Splicing factor 3b, su 98.7 2.9E-05 6.3E-10 93.1 34.8 561 115-774 562-1144(1172)
45 KOG1789 Endocytosis protein RM 98.7 0.0016 3.4E-08 81.0 49.8 508 189-714 1420-2143(2235)
46 KOG0168 Putative ubiquitin fus 98.7 3.5E-06 7.7E-11 102.5 26.5 403 413-821 169-633 (1051)
47 KOG1824 TATA-binding protein-i 98.7 0.0003 6.4E-09 87.1 42.6 701 24-770 9-763 (1233)
48 cd00256 VATPase_H VATPase_H, r 98.7 9.1E-06 2E-10 96.5 28.1 318 369-688 53-426 (429)
49 cd00256 VATPase_H VATPase_H, r 98.6 2.3E-05 5E-10 93.2 30.3 349 64-441 52-426 (429)
50 KOG0946 ER-Golgi vesicle-tethe 98.5 0.0013 2.9E-08 80.3 41.5 353 9-406 11-407 (970)
51 KOG1241 Karyopherin (importin) 98.5 0.0012 2.5E-08 80.8 39.1 643 198-940 4-691 (859)
52 KOG2160 Armadillo/beta-catenin 98.5 9.6E-06 2.1E-10 91.9 19.7 189 30-224 91-281 (342)
53 COG5215 KAP95 Karyopherin (imp 98.4 0.0015 3.3E-08 76.9 36.7 280 418-730 373-668 (858)
54 PF03224 V-ATPase_H_N: V-ATPas 98.4 5.3E-06 1.1E-10 96.9 16.8 223 64-292 54-294 (312)
55 PF05536 Neurochondrin: Neuroc 98.4 0.00034 7.4E-09 87.1 33.4 237 18-267 3-260 (543)
56 KOG0946 ER-Golgi vesicle-tethe 98.4 0.00032 6.9E-09 85.5 30.9 363 237-694 21-406 (970)
57 KOG1062 Vesicle coat complex A 98.3 0.0009 2E-08 82.2 33.0 419 152-639 104-575 (866)
58 KOG0213 Splicing factor 3b, su 98.3 0.0022 4.8E-08 77.6 35.3 320 371-727 801-1138(1172)
59 KOG2160 Armadillo/beta-catenin 98.3 3.1E-05 6.6E-10 87.9 19.2 185 382-566 95-282 (342)
60 TIGR02270 conserved hypothetic 98.2 0.00031 6.7E-09 84.2 25.7 209 412-686 87-295 (410)
61 COG5215 KAP95 Karyopherin (imp 98.2 0.028 6.1E-07 66.8 40.1 604 118-800 17-693 (858)
62 TIGR02270 conserved hypothetic 98.2 0.00027 5.9E-09 84.6 24.9 181 410-645 116-296 (410)
63 KOG1062 Vesicle coat complex A 98.2 0.008 1.7E-07 74.2 36.2 356 372-775 145-548 (866)
64 KOG3678 SARM protein (with ste 98.2 0.00011 2.4E-09 84.0 19.2 272 446-769 173-450 (832)
65 COG5181 HSH155 U2 snRNP splice 98.1 0.0049 1.1E-07 73.3 32.6 323 369-729 604-945 (975)
66 KOG1060 Vesicle coat complex A 98.1 0.0038 8.3E-08 76.5 32.1 422 34-564 47-531 (968)
67 KOG2759 Vacuolar H+-ATPase V1 98.1 0.0011 2.5E-08 76.3 25.7 348 64-440 64-438 (442)
68 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00035 7.5E-09 80.4 21.4 300 372-688 117-439 (442)
69 PF03224 V-ATPase_H_N: V-ATPas 98.1 0.00015 3.2E-09 84.8 19.0 216 412-667 56-292 (312)
70 PF05536 Neurochondrin: Neuroc 98.1 0.0095 2.1E-07 74.4 35.7 414 238-751 5-460 (543)
71 KOG3678 SARM protein (with ste 98.0 0.00028 6.1E-09 80.8 19.3 262 404-682 173-447 (832)
72 COG5181 HSH155 U2 snRNP splice 97.9 0.04 8.7E-07 66.0 35.0 332 412-773 605-948 (975)
73 COG1413 FOG: HEAT repeat [Ener 97.9 0.0015 3.3E-08 77.2 23.5 214 453-726 43-269 (335)
74 KOG0211 Protein phosphatase 2A 97.9 0.015 3.3E-07 74.1 32.8 567 71-728 88-662 (759)
75 COG1413 FOG: HEAT repeat [Ener 97.8 0.003 6.6E-08 74.7 25.1 253 411-734 43-308 (335)
76 KOG2973 Uncharacterized conser 97.8 0.0055 1.2E-07 68.0 23.6 277 455-772 5-315 (353)
77 KOG4646 Uncharacterized conser 97.8 0.00012 2.5E-09 71.2 9.5 123 370-493 17-139 (173)
78 KOG4413 26S proteasome regulat 97.8 0.024 5.2E-07 63.1 28.0 388 42-521 63-481 (524)
79 KOG1059 Vesicle coat complex A 97.7 0.06 1.3E-06 65.9 32.8 223 239-532 145-371 (877)
80 KOG4646 Uncharacterized conser 97.7 0.00036 7.8E-09 67.9 11.2 124 411-536 16-140 (173)
81 KOG0212 Uncharacterized conser 97.7 0.0071 1.5E-07 71.9 23.6 353 103-525 81-445 (675)
82 KOG1242 Protein containing ada 97.7 0.026 5.5E-07 68.7 28.8 385 372-774 58-486 (569)
83 KOG0212 Uncharacterized conser 97.6 0.0099 2.1E-07 70.7 24.1 344 385-738 99-454 (675)
84 KOG4413 26S proteasome regulat 97.6 0.048 1E-06 60.8 27.1 277 198-524 84-377 (524)
85 PF14664 RICTOR_N: Rapamycin-i 97.6 0.024 5.1E-07 67.5 26.9 311 384-729 39-363 (371)
86 PF00514 Arm: Armadillo/beta-c 97.6 0.00011 2.4E-09 58.0 4.9 41 484-524 1-41 (41)
87 KOG1061 Vesicle coat complex A 97.5 0.014 3.1E-07 72.3 24.3 179 64-270 12-191 (734)
88 KOG0211 Protein phosphatase 2A 97.5 0.12 2.6E-06 66.1 32.8 560 35-684 95-661 (759)
89 KOG2973 Uncharacterized conser 97.5 0.02 4.3E-07 63.8 22.4 112 414-530 6-117 (353)
90 KOG1242 Protein containing ada 97.5 0.061 1.3E-06 65.5 28.1 322 370-717 135-469 (569)
91 KOG1789 Endocytosis protein RM 97.5 0.056 1.2E-06 67.9 27.8 355 173-550 1744-2143(2235)
92 KOG1060 Vesicle coat complex A 97.4 0.11 2.4E-06 64.3 29.2 286 383-690 121-461 (968)
93 KOG4151 Myosin assembly protei 97.4 0.0072 1.6E-07 75.1 18.9 272 489-770 463-740 (748)
94 KOG1059 Vesicle coat complex A 97.4 0.078 1.7E-06 65.0 26.9 245 413-687 146-401 (877)
95 PF00514 Arm: Armadillo/beta-c 97.2 0.00038 8.3E-09 54.9 4.3 38 444-481 3-40 (41)
96 PF14664 RICTOR_N: Rapamycin-i 97.2 0.072 1.6E-06 63.4 25.0 223 411-644 108-363 (371)
97 KOG1077 Vesicle coat complex A 97.2 1 2.3E-05 55.4 35.6 193 437-668 315-512 (938)
98 COG5240 SEC21 Vesicle coat com 97.2 0.62 1.4E-05 55.9 31.3 70 455-527 266-335 (898)
99 KOG1061 Vesicle coat complex A 97.2 0.27 5.8E-06 61.5 29.2 473 196-772 13-490 (734)
100 KOG2734 Uncharacterized conser 97.1 0.12 2.5E-06 60.3 23.3 260 85-465 104-374 (536)
101 PF10165 Ric8: Guanine nucleot 97.0 0.051 1.1E-06 66.6 22.0 254 392-646 3-338 (446)
102 PF13646 HEAT_2: HEAT repeats; 96.9 0.0027 5.9E-08 59.0 7.6 86 455-562 1-88 (88)
103 PRK14707 hypothetical protein; 96.9 3.8 8.3E-05 56.6 53.2 694 36-771 178-907 (2710)
104 PF13646 HEAT_2: HEAT repeats; 96.9 0.005 1.1E-07 57.2 8.9 86 413-520 1-88 (88)
105 KOG1943 Beta-tubulin folding c 96.9 2.8 6E-05 54.5 41.8 243 411-677 341-601 (1133)
106 KOG0915 Uncharacterized conser 96.8 0.74 1.6E-05 61.3 30.3 447 199-687 821-1344(1702)
107 KOG1517 Guanine nucleotide bin 96.8 0.046 9.9E-07 69.3 18.7 247 387-651 484-738 (1387)
108 COG5369 Uncharacterized conser 96.8 0.0056 1.2E-07 72.1 10.0 302 175-522 410-739 (743)
109 KOG1077 Vesicle coat complex A 96.8 1.7 3.6E-05 53.8 30.3 87 196-292 329-415 (938)
110 KOG0567 HEAT repeat-containing 96.7 0.22 4.7E-06 54.8 20.9 217 455-729 38-279 (289)
111 KOG4535 HEAT and armadillo rep 96.7 0.22 4.8E-06 58.4 21.5 112 105-225 45-179 (728)
112 KOG1943 Beta-tubulin folding c 96.6 4.2 9E-05 53.0 38.1 269 191-524 337-611 (1133)
113 KOG2734 Uncharacterized conser 96.6 0.65 1.4E-05 54.4 24.2 245 390-668 104-371 (536)
114 KOG4535 HEAT and armadillo rep 96.4 0.31 6.8E-06 57.2 20.7 307 468-777 270-609 (728)
115 PF10165 Ric8: Guanine nucleot 96.4 0.33 7.2E-06 59.6 22.5 117 176-293 3-134 (446)
116 smart00185 ARM Armadillo/beta- 96.4 0.0066 1.4E-07 47.4 5.2 40 485-524 2-41 (41)
117 KOG2259 Uncharacterized conser 96.4 0.48 1E-05 57.9 22.6 147 406-569 368-514 (823)
118 PF09759 Atx10homo_assoc: Spin 96.3 0.016 3.6E-07 55.0 8.2 67 469-535 2-70 (102)
119 PF12348 CLASP_N: CLASP N term 96.2 0.08 1.7E-06 58.9 14.3 185 463-649 17-210 (228)
120 KOG1517 Guanine nucleotide bin 96.1 0.19 4.1E-06 64.0 17.8 182 39-226 487-672 (1387)
121 KOG0567 HEAT repeat-containing 96.0 0.73 1.6E-05 50.8 19.4 236 197-523 37-279 (289)
122 smart00185 ARM Armadillo/beta- 95.9 0.014 3.1E-07 45.5 4.9 37 445-481 4-40 (41)
123 PF12348 CLASP_N: CLASP N term 95.9 0.031 6.7E-07 62.2 9.5 182 75-269 17-207 (228)
124 KOG1078 Vesicle coat complex C 95.9 7.6 0.00016 49.1 33.9 274 412-729 246-531 (865)
125 KOG2259 Uncharacterized conser 95.9 0.98 2.1E-05 55.4 21.8 272 540-823 201-500 (823)
126 COG5240 SEC21 Vesicle coat com 95.9 6.2 0.00014 47.8 33.9 334 304-686 204-554 (898)
127 COG5369 Uncharacterized conser 95.9 0.04 8.7E-07 65.2 10.2 186 473-694 409-601 (743)
128 PF12460 MMS19_C: RNAPII trans 95.9 1.9 4.1E-05 52.7 25.3 75 453-527 323-397 (415)
129 PF09759 Atx10homo_assoc: Spin 95.8 0.028 6E-07 53.5 7.3 66 428-493 3-70 (102)
130 PRK14707 hypothetical protein; 95.8 15 0.00032 51.3 54.0 693 40-771 308-1033(2710)
131 KOG1078 Vesicle coat complex C 95.6 10 0.00022 48.1 31.2 273 455-770 247-531 (865)
132 KOG4151 Myosin assembly protei 95.5 0.081 1.7E-06 66.1 11.6 162 386-547 558-722 (748)
133 KOG1058 Vesicle coat complex C 95.5 2.3 5E-05 53.0 23.1 246 424-733 219-466 (948)
134 PF05004 IFRD: Interferon-rela 95.1 0.71 1.5E-05 53.8 17.1 198 19-223 42-255 (309)
135 KOG0915 Uncharacterized conser 95.1 20 0.00044 48.6 34.8 475 39-568 938-1429(1702)
136 PF13513 HEAT_EZ: HEAT-like re 95.0 0.036 7.8E-07 46.6 4.6 55 79-133 1-55 (55)
137 COG5231 VMA13 Vacuolar H+-ATPa 95.0 0.71 1.5E-05 51.9 15.5 254 419-687 157-428 (432)
138 PF13513 HEAT_EZ: HEAT-like re 94.5 0.063 1.4E-06 45.1 4.8 55 425-480 1-55 (55)
139 PF11841 DUF3361: Domain of un 94.4 0.65 1.4E-05 47.9 12.7 120 448-568 6-133 (160)
140 KOG1788 Uncharacterized conser 94.4 15 0.00032 47.5 25.9 234 39-292 484-785 (2799)
141 KOG1240 Protein kinase contain 94.3 1.1 2.4E-05 58.5 17.0 296 414-736 425-731 (1431)
142 PF12460 MMS19_C: RNAPII trans 94.2 18 0.00039 44.2 27.7 327 385-732 17-396 (415)
143 COG5231 VMA13 Vacuolar H+-ATPa 93.7 2.1 4.5E-05 48.3 15.6 252 38-317 165-426 (432)
144 PF05004 IFRD: Interferon-rela 93.4 5.1 0.00011 46.8 19.3 183 458-646 48-258 (309)
145 PF08569 Mo25: Mo25-like; Int 93.1 5.4 0.00012 46.9 18.9 195 449-646 72-284 (335)
146 PF11841 DUF3361: Domain of un 93.0 2 4.4E-05 44.4 13.3 119 406-525 6-132 (160)
147 COG5096 Vesicle coat complex, 92.8 2.2 4.8E-05 54.5 16.0 163 504-686 28-194 (757)
148 KOG1058 Vesicle coat complex C 92.7 37 0.0008 43.1 34.8 229 411-665 243-487 (948)
149 COG5096 Vesicle coat complex, 92.6 42 0.0009 43.5 30.7 140 413-567 57-196 (757)
150 KOG1991 Nuclear transport rece 92.5 45 0.00099 43.6 41.4 438 76-548 15-558 (1010)
151 KOG3036 Protein involved in ce 92.1 7.1 0.00015 42.9 16.4 144 390-535 99-257 (293)
152 KOG1240 Protein kinase contain 92.0 8.9 0.00019 50.6 19.9 278 173-524 442-725 (1431)
153 PF05918 API5: Apoptosis inhib 91.2 3.3 7.3E-05 51.4 14.8 130 416-564 28-160 (556)
154 KOG2062 26S proteasome regulat 91.1 22 0.00048 44.8 21.1 153 411-586 519-680 (929)
155 PF08045 CDC14: Cell division 91.0 1.8 4E-05 48.4 11.2 100 426-525 106-208 (257)
156 KOG2062 26S proteasome regulat 90.5 8.2 0.00018 48.4 16.7 100 613-729 551-652 (929)
157 PF12755 Vac14_Fab1_bd: Vacuol 90.1 1.7 3.6E-05 41.4 8.6 92 428-524 3-96 (97)
158 PF11698 V-ATPase_H_C: V-ATPas 89.4 0.75 1.6E-05 45.1 5.8 74 615-688 42-116 (119)
159 PF08045 CDC14: Cell division 89.3 3.6 7.7E-05 46.2 11.7 99 630-729 105-206 (257)
160 PF05918 API5: Apoptosis inhib 89.2 1.6 3.4E-05 54.2 9.7 103 22-135 22-125 (556)
161 PF07814 WAPL: Wings apart-lik 89.1 12 0.00026 44.7 17.0 84 380-463 32-116 (361)
162 KOG2956 CLIP-associating prote 89.0 12 0.00026 44.8 16.1 187 19-224 285-476 (516)
163 PF07814 WAPL: Wings apart-lik 88.2 25 0.00054 42.1 18.9 94 197-291 22-116 (361)
164 PF11698 V-ATPase_H_C: V-ATPas 87.4 1.1 2.4E-05 43.9 5.5 72 453-524 43-115 (119)
165 KOG2274 Predicted importin 9 [ 87.4 83 0.0018 41.0 22.7 179 416-600 495-689 (1005)
166 KOG2999 Regulator of Rac1, req 87.3 13 0.00029 45.1 15.1 153 67-224 85-241 (713)
167 PF12717 Cnd1: non-SMC mitotic 86.9 9.8 0.00021 40.6 13.1 88 38-135 4-92 (178)
168 PF12717 Cnd1: non-SMC mitotic 86.7 20 0.00043 38.3 15.2 88 508-600 1-92 (178)
169 PF04063 DUF383: Domain of unk 86.7 3.6 7.8E-05 44.3 9.5 117 41-161 14-157 (192)
170 PF08569 Mo25: Mo25-like; Int 86.5 76 0.0016 37.5 21.0 213 533-779 72-291 (335)
171 PF12719 Cnd3: Nuclear condens 86.1 9.6 0.00021 44.3 13.5 179 496-714 27-210 (298)
172 KOG4653 Uncharacterized conser 85.7 12 0.00027 47.8 14.4 184 68-268 730-918 (982)
173 KOG3036 Protein involved in ce 85.6 51 0.0011 36.5 17.1 154 468-653 94-254 (293)
174 PF02985 HEAT: HEAT repeat; I 85.6 1.4 3.1E-05 32.2 4.0 28 618-645 2-29 (31)
175 KOG1832 HIV-1 Vpr-binding prot 85.3 6.2 0.00014 50.0 11.5 139 386-537 625-785 (1516)
176 KOG2956 CLIP-associating prote 85.3 30 0.00066 41.6 16.5 175 468-646 302-478 (516)
177 PF14225 MOR2-PAG1_C: Cell mor 85.1 75 0.0016 36.2 20.1 170 495-673 60-243 (262)
178 PF02985 HEAT: HEAT repeat; I 85.0 1.4 3.1E-05 32.2 3.8 28 67-94 2-29 (31)
179 PF13764 E3_UbLigase_R4: E3 ub 85.0 97 0.0021 40.8 22.6 213 449-668 113-385 (802)
180 PF12755 Vac14_Fab1_bd: Vacuol 84.9 4.2 9.2E-05 38.7 8.0 72 699-771 25-96 (97)
181 PF11701 UNC45-central: Myosin 84.2 3.6 7.8E-05 42.9 7.9 136 381-521 16-156 (157)
182 PF12719 Cnd3: Nuclear condens 84.1 14 0.00031 42.9 13.7 164 578-755 34-210 (298)
183 KOG2611 Neurochondrin/leucine- 83.7 54 0.0012 39.5 17.5 192 242-480 15-223 (698)
184 KOG0414 Chromosome condensatio 83.3 7.8 0.00017 51.1 11.6 143 412-569 920-1067(1251)
185 PF13764 E3_UbLigase_R4: E3 ub 83.2 1.2E+02 0.0027 39.9 22.4 199 490-713 112-331 (802)
186 KOG2274 Predicted importin 9 [ 83.1 77 0.0017 41.3 19.7 205 70-283 495-704 (1005)
187 KOG2025 Chromosome condensatio 83.0 83 0.0018 39.9 19.4 208 452-687 84-294 (892)
188 PF04078 Rcd1: Cell differenti 81.4 83 0.0018 35.4 17.3 200 423-654 7-226 (262)
189 PF11701 UNC45-central: Myosin 80.9 8.9 0.00019 40.0 9.3 113 18-132 40-156 (157)
190 PF04063 DUF383: Domain of unk 80.6 11 0.00023 40.8 9.9 81 453-535 52-142 (192)
191 PF06371 Drf_GBD: Diaphanous G 80.5 10 0.00022 40.5 10.1 109 412-523 67-186 (187)
192 KOG2025 Chromosome condensatio 79.3 68 0.0015 40.6 16.9 108 65-185 85-192 (892)
193 PF06025 DUF913: Domain of Unk 79.0 91 0.002 37.6 18.2 100 449-549 101-208 (379)
194 KOG1248 Uncharacterized conser 78.9 45 0.00097 44.5 16.2 229 508-740 667-910 (1176)
195 PF04078 Rcd1: Cell differenti 78.1 24 0.00052 39.6 11.8 144 390-535 70-228 (262)
196 KOG2999 Regulator of Rac1, req 76.6 39 0.00084 41.4 13.6 156 411-568 83-244 (713)
197 KOG1020 Sister chromatid cohes 76.2 3.3E+02 0.0072 37.9 33.5 141 64-226 815-961 (1692)
198 KOG1832 HIV-1 Vpr-binding prot 75.7 1.7E+02 0.0037 38.0 19.0 160 488-659 594-786 (1516)
199 smart00638 LPD_N Lipoprotein N 75.3 48 0.001 42.4 15.6 159 65-255 393-565 (574)
200 PF01347 Vitellogenin_N: Lipop 75.1 44 0.00095 43.2 15.3 158 67-256 433-610 (618)
201 PF06371 Drf_GBD: Diaphanous G 74.9 46 0.001 35.4 13.1 110 453-565 66-186 (187)
202 KOG1566 Conserved protein Mo25 74.5 1.7E+02 0.0037 33.8 17.5 197 448-646 74-287 (342)
203 COG5116 RPN2 26S proteasome re 74.0 25 0.00055 42.9 11.2 101 453-569 551-653 (926)
204 KOG3665 ZYG-1-like serine/thre 73.9 2.7E+02 0.0059 36.5 21.6 179 434-669 494-678 (699)
205 KOG1788 Uncharacterized conser 73.5 3.1E+02 0.0068 36.4 26.0 292 410-753 465-785 (2799)
206 COG5098 Chromosome condensatio 73.3 60 0.0013 40.8 14.2 132 423-569 908-1040(1128)
207 PF14668 RICTOR_V: Rapamycin-i 71.4 18 0.00039 32.5 7.2 66 470-537 4-70 (73)
208 PF01347 Vitellogenin_N: Lipop 68.3 1.4E+02 0.003 38.6 17.7 167 410-593 394-582 (618)
209 KOG1820 Microtubule-associated 68.2 73 0.0016 42.0 14.5 184 67-268 255-443 (815)
210 COG5209 RCD1 Uncharacterized p 67.7 56 0.0012 35.6 11.0 144 389-534 119-277 (315)
211 KOG0414 Chromosome condensatio 67.2 41 0.00089 44.8 11.8 138 496-646 920-1065(1251)
212 PF12530 DUF3730: Protein of u 67.0 2.2E+02 0.0047 31.9 17.9 135 498-645 3-151 (234)
213 COG5116 RPN2 26S proteasome re 66.9 31 0.00068 42.1 9.9 125 536-673 550-677 (926)
214 KOG0301 Phospholipase A2-activ 66.8 1.9E+02 0.0041 36.7 16.6 135 617-757 590-731 (745)
215 KOG1992 Nuclear export recepto 66.8 4E+02 0.0086 34.9 32.9 569 549-1211 17-650 (960)
216 KOG1967 DNA repair/transcripti 66.4 22 0.00047 46.0 9.0 147 370-518 868-1018(1030)
217 KOG1820 Microtubule-associated 64.0 1.2E+02 0.0026 40.1 15.3 187 385-581 268-458 (815)
218 cd03561 VHS VHS domain family; 63.7 87 0.0019 31.6 11.4 71 65-135 37-112 (133)
219 PF08324 PUL: PUL domain; Int 63.5 1E+02 0.0022 35.1 13.4 155 386-541 79-248 (268)
220 cd03569 VHS_Hrs_Vps27p VHS dom 62.4 59 0.0013 33.3 9.9 107 21-135 4-114 (142)
221 COG5218 YCG1 Chromosome conden 61.6 2.9E+02 0.0064 34.5 16.5 114 12-135 80-196 (885)
222 KOG1967 DNA repair/transcripti 60.9 34 0.00074 44.3 9.3 152 64-220 866-1019(1030)
223 KOG4653 Uncharacterized conser 59.1 1.3E+02 0.0027 39.2 13.6 174 385-569 742-921 (982)
224 cd03567 VHS_GGA VHS domain fam 58.2 99 0.0021 31.6 10.6 71 65-135 38-116 (139)
225 KOG4464 Signaling protein RIC- 57.5 4.1E+02 0.0088 31.9 20.6 136 372-507 48-199 (532)
226 PF10363 DUF2435: Protein of u 56.4 27 0.00058 32.9 5.7 84 67-162 5-88 (92)
227 PF06025 DUF913: Domain of Unk 55.1 4.5E+02 0.0098 31.7 22.1 125 410-535 105-243 (379)
228 smart00638 LPD_N Lipoprotein N 55.0 2.5E+02 0.0053 35.9 16.2 150 411-582 393-559 (574)
229 PF13251 DUF4042: Domain of un 54.2 2.1E+02 0.0045 30.7 12.7 112 620-731 44-175 (182)
230 KOG3665 ZYG-1-like serine/thre 53.1 5.5E+02 0.012 33.7 18.7 94 639-733 494-590 (699)
231 PF12031 DUF3518: Domain of un 52.1 33 0.00072 37.9 6.3 84 384-467 138-230 (257)
232 PF12031 DUF3518: Domain of un 52.0 37 0.0008 37.6 6.6 84 468-552 139-231 (257)
233 cd03568 VHS_STAM VHS domain fa 50.8 1.3E+02 0.0029 30.8 10.3 71 65-135 37-110 (144)
234 COG5218 YCG1 Chromosome conden 50.7 2.7E+02 0.0058 34.8 13.8 104 411-525 91-197 (885)
235 PF14668 RICTOR_V: Rapamycin-i 50.1 70 0.0015 28.8 7.0 68 633-702 4-71 (73)
236 PF08167 RIX1: rRNA processing 49.4 1.5E+02 0.0031 31.3 10.7 110 412-525 26-144 (165)
237 KOG1991 Nuclear transport rece 48.6 8.2E+02 0.018 32.8 32.5 126 149-278 408-542 (1010)
238 PF11707 Npa1: Ribosome 60S bi 47.8 5.3E+02 0.012 30.4 17.9 159 413-571 58-242 (330)
239 smart00288 VHS Domain present 46.2 1.2E+02 0.0027 30.6 9.1 71 65-135 37-111 (133)
240 KOG2611 Neurochondrin/leucine- 46.1 6.5E+02 0.014 30.9 23.3 278 499-820 15-329 (698)
241 PF12530 DUF3730: Protein of u 44.8 4.8E+02 0.01 29.1 17.8 132 419-566 9-151 (234)
242 PF08324 PUL: PUL domain; Int 44.3 75 0.0016 36.1 8.2 123 153-276 108-239 (268)
243 KOG1248 Uncharacterized conser 43.5 1E+03 0.023 32.5 54.7 212 549-774 666-901 (1176)
244 PF00790 VHS: VHS domain; Int 42.4 1.5E+02 0.0032 30.2 9.2 108 20-135 4-118 (140)
245 PF14631 FancD2: Fanconi anaem 41.7 1.1E+03 0.025 33.7 20.0 344 412-771 193-583 (1426)
246 PF10363 DUF2435: Protein of u 41.7 80 0.0017 29.8 6.4 79 499-579 7-85 (92)
247 PF03130 HEAT_PBS: PBS lyase H 41.7 32 0.0007 24.3 2.9 26 1258-1293 1-26 (27)
248 PF11865 DUF3385: Domain of un 38.1 1.9E+02 0.004 30.3 9.3 69 370-438 87-155 (160)
249 KOG2038 CAATT-binding transcri 37.0 2.5E+02 0.0054 36.2 11.1 106 195-318 303-408 (988)
250 KOG2933 Uncharacterized conser 35.6 1.6E+02 0.0035 34.0 8.6 140 412-564 89-232 (334)
251 PF08506 Cse1: Cse1; InterPro 35.3 5E+02 0.011 31.2 13.4 76 449-525 206-285 (370)
252 COG5098 Chromosome condensatio 35.2 6.1E+02 0.013 32.5 13.8 137 497-646 894-1038(1128)
253 PF08216 CTNNBL: Catenin-beta- 34.8 41 0.00089 32.6 3.3 41 83-123 64-104 (108)
254 KOG2032 Uncharacterized conser 34.2 9.9E+02 0.021 29.6 17.4 108 618-729 260-370 (533)
255 PRK09169 hypothetical protein; 34.1 1.9E+03 0.041 32.8 45.1 44 728-771 738-781 (2316)
256 KOG4464 Signaling protein RIC- 33.7 9.3E+02 0.02 29.1 17.9 78 173-250 116-199 (532)
257 KOG1020 Sister chromatid cohes 32.7 1.7E+03 0.036 31.7 32.2 146 411-570 816-964 (1692)
258 PF11864 DUF3384: Domain of un 31.4 1.1E+03 0.024 29.2 16.6 82 376-463 35-117 (464)
259 cd03561 VHS VHS domain family; 30.2 1.8E+02 0.004 29.3 7.5 72 453-524 37-112 (133)
260 KOG1243 Protein kinase [Genera 30.0 2.9E+02 0.0062 35.4 10.3 179 452-642 329-512 (690)
261 cd03568 VHS_STAM VHS domain fa 29.5 1.6E+02 0.0036 30.2 7.0 72 453-524 37-110 (144)
262 KOG2032 Uncharacterized conser 29.0 1.2E+03 0.026 28.9 21.0 141 421-566 268-415 (533)
263 PF08167 RIX1: rRNA processing 29.0 1.8E+02 0.0039 30.6 7.4 69 66-135 26-97 (165)
264 COG5209 RCD1 Uncharacterized p 28.8 6.4E+02 0.014 27.8 11.2 107 629-736 112-224 (315)
265 PF12830 Nipped-B_C: Sister ch 28.7 1.5E+02 0.0032 31.9 6.9 65 66-135 9-74 (187)
266 KOG2933 Uncharacterized conser 28.5 3.8E+02 0.0083 31.1 10.0 133 455-593 90-227 (334)
267 cd03569 VHS_Hrs_Vps27p VHS dom 27.8 1.8E+02 0.0039 29.8 7.0 72 196-267 41-113 (142)
268 PF12830 Nipped-B_C: Sister ch 26.5 5.3E+02 0.011 27.6 10.7 67 412-483 9-75 (187)
269 KOG1243 Protein kinase [Genera 26.0 3.8E+02 0.0083 34.3 10.4 186 571-771 330-515 (690)
270 PF14666 RICTOR_M: Rapamycin-i 25.6 6.4E+02 0.014 28.1 11.2 128 467-598 78-223 (226)
271 KOG2137 Protein kinase [Signal 25.1 8.9E+02 0.019 31.4 13.3 114 38-164 405-521 (700)
272 PF11707 Npa1: Ribosome 60S bi 24.8 1.2E+03 0.026 27.5 20.2 150 497-646 58-238 (330)
273 PF14726 RTTN_N: Rotatin, an a 23.2 5.5E+02 0.012 24.6 8.7 66 453-519 30-95 (98)
274 PF11791 Aconitase_B_N: Aconit 22.4 3.2E+02 0.007 28.2 7.3 42 554-598 80-121 (154)
275 COG5656 SXM1 Importin, protein 21.9 7.9E+02 0.017 31.9 11.8 101 615-718 459-559 (970)
276 PF10274 ParcG: Parkin co-regu 21.6 3.5E+02 0.0077 29.0 7.8 70 65-135 38-109 (183)
277 smart00288 VHS Domain present 21.6 2.7E+02 0.0058 28.1 6.8 71 197-267 38-110 (133)
278 PF14225 MOR2-PAG1_C: Cell mor 21.5 1.2E+03 0.027 26.5 20.4 76 629-714 166-241 (262)
279 PF12054 DUF3535: Domain of un 21.4 1.2E+03 0.026 28.7 13.7 245 587-870 103-369 (441)
280 KOG2137 Protein kinase [Signal 21.3 7.2E+02 0.016 32.1 11.5 98 615-718 427-525 (700)
281 PF06685 DUF1186: Protein of u 20.5 1.3E+03 0.027 26.2 13.1 108 64-191 30-150 (249)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.4e-184 Score=1787.55 Aligned_cols=1307 Identities=65% Similarity=0.921 Sum_probs=1226.7
Q ss_pred CCCCCCchhHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHH
Q 000714 10 TSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVL 89 (1335)
Q Consensus 10 ~~~~~~~~~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L 89 (1335)
.+||||+++..+|..++++|++.+++.++|++|+..|+.|+++++++|..|+...|++|.|+.+|++++..+|.+++.+|
T Consensus 3 ~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL 82 (2102)
T PLN03200 3 SEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVL 82 (2102)
T ss_pred ccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 46999999999999999999987778899999999999999999999999987799999999999999999999999999
Q ss_pred HHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhh
Q 000714 90 GSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV 169 (1335)
Q Consensus 90 ~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~ 169 (1335)
.+++.+++++.+++..|+||+|+.+|++++++.|+.|+.+|++++..+..|+.+..+++..|+||+|++++++++..+..
T Consensus 83 ~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~ 162 (2102)
T PLN03200 83 GVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKV 162 (2102)
T ss_pred HHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHH
Confidence 99999999999999999999999999999999999999999999994322444446788999999999999998766666
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcC
Q 000714 170 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS 249 (1335)
Q Consensus 170 v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s 249 (1335)
+++.++.+|.|||...++++..+++.|+|+.++.+|+++++..+..++.+|.+++...++.+..+++.|+||.|+++|++
T Consensus 163 L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s 242 (2102)
T PLN03200 163 VEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ 242 (2102)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc
Confidence 77888999999999999998999999999999999999999999999999988987767788999999999999999987
Q ss_pred CCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhc
Q 000714 250 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG 329 (1335)
Q Consensus 250 ~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~ 329 (1335)
+++..+|..|+++|++|+++++++++.+++.||+|.|++++.++++++++++.+..++++|+++|.|+++|.+.++.+|+
T Consensus 243 g~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~ 322 (2102)
T PLN03200 243 GNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLG 322 (2102)
T ss_pred CCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHH
Confidence 66668999999999999998999999999999999999999999888888888889999999999999999999999999
Q ss_pred ccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc
Q 000714 330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN 409 (1335)
Q Consensus 330 ~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~ 409 (1335)
++.++++...++++.+|++.|+++.++...+....+++..+...|++|+++..+..+++.+.++|..++.|+.+++.+.+
T Consensus 323 ~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~ 402 (2102)
T PLN03200 323 ELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNH 402 (2102)
T ss_pred HhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Confidence 99988888888899999999999998876666667788888999999999998887899999999999999999999999
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
.++++.|+.||...+.++|..++++|++|+.++++.++.+.+.|++|.|+++|++++..+|+.|+++|+||+..+++++.
T Consensus 403 ~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~ 482 (2102)
T PLN03200 403 AEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKW 482 (2102)
T ss_pred ccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999988888999
Q ss_pred HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
.+.++|+||+|+++|++++.++|+.|+|+|+||+.++++++..+.++|++++|+++|++++++.|+.|+++|.++....+
T Consensus 483 aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d 562 (2102)
T PLN03200 483 AITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD 562 (2102)
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999877888888899999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 000714 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1335)
Q Consensus 570 ~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~ 649 (1335)
...+++++.+|.++++..+.++..+++++......++..+.+....++++.|+++++++++.+++.|+++|.+++.++++
T Consensus 563 ~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 563 AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 99999999999999999999999999999887777776666666789999999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 650 ~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
++..++..|++++++.+|++++.+++++++++|.+++.+..+.++..+.+.|++++|++++++++.++++.++.+|.|++
T Consensus 643 ~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 643 LCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998777777767899999999999999999999999999999999
Q ss_pred CCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCC-CCCCchhH
Q 000714 730 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS-GSVATSEA 808 (1335)
Q Consensus 730 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~-~~~~~~~a 808 (1335)
.+++.+.++...|++++|++++++|+.++|++|+|+|.+|.++++.+++..+++++.|++.+|+.+++..+ +.+...++
T Consensus 723 ~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~a 802 (2102)
T PLN03200 723 SDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEA 802 (2102)
T ss_pred cCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999 77777899
Q ss_pred HHHHHHHHHhCCCCCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCCccchhhhcccccHHHHHH
Q 000714 809 LDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIAR 888 (1335)
Q Consensus 809 l~~L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~~~g~~i~~~g~~~~~~~~ 888 (1335)
+++|..+++.+.+.++++|||..+.|+|+++++|++|+..++|.+|+|+++||++||+||+.+.|+.+....+|+.+++.
T Consensus 803 l~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (2102)
T PLN03200 803 LEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLAD 882 (2102)
T ss_pred HHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCchhhhhhHHHHHHhhccccchhhcccccccchhHHHHHHHhhhhcccCCcccc-CCCchhhhHHhhcCCchhh
Q 000714 889 RVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRN-QGNDDKEAISIYRYTSEEA 967 (1335)
Q Consensus 889 ~~l~s~~~~~k~~a~~~~i~~~k~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 967 (1335)
|+++|++.++|+||+.++||++|.++|++++.+++++++..+|+.||||+++++.++ + +..+.+..-..-++ ..-
T Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~ 958 (2102)
T PLN03200 883 RIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKE--SLSIEIQTPRGFLESN--LFA 958 (2102)
T ss_pred HHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCccc--ccceeecCCccchhhh--hhc
Confidence 999999999999999999999999999999999999999999999999999987773 2 11111000000000 001
Q ss_pred ccCCccccCcchhchhhHHHHHHHHHhcCCCccchhHhhcchhHHhHHHhhccccccccccccccchhHHHHHHHHHHhc
Q 000714 968 RNGGESESSTAVIFGENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQ 1047 (1335)
Q Consensus 968 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 1047 (1335)
..+.+.-.++..+.|+++|+|||++||+||++||++|||+|+||+|||||++|... +|++++|++++|||+||||||||
T Consensus 959 ~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~-~q~~~~d~~~~~~~~~ll~~lf~ 1037 (2102)
T PLN03200 959 DGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSN-RQAEFEDSESIWISALLLAILFQ 1037 (2102)
T ss_pred cCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccC-ccccccccHHHHHHHHHHHHHcC
Confidence 12234444566777999999999999999999999999999999999999999666 99999999999999999999999
Q ss_pred chhhhhhhhhhchHHHHHHHhcccchhhhHHHHHHHHHhhhcCCCCcchhhcccCcccchhhhhcccccchhhhhhhhHH
Q 000714 1048 DRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEE 1127 (1335)
Q Consensus 1048 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1127 (1335)
||+++|+|++|++||+|+.+|||++.+|||||||+||||||||||||.|+|+|||||.|+|+|+||+|+||++|++|+||
T Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e 1117 (2102)
T PLN03200 1038 DRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEE 1117 (2102)
T ss_pred ChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCcHHHHHhhhccccccchhhhhhhhhhHHhhcCCCCCCCCchhHHHHHHHHhhhcCCCcceeeeecChHHHHHH
Q 000714 1128 FALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGFLIQLAKDCPSNKIVMVEAGALEALTK 1207 (1335)
Q Consensus 1128 ~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~e~~~~~~l~~ 1207 (1335)
|+|++|||+++||+||++||||+|+||||+||+|||||+|++|||++|+.|++.|++|+.+++.|+..|+|+|+++.|+|
T Consensus 1118 ~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k 1197 (2102)
T PLN03200 1118 FSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK 1197 (2102)
T ss_pred hhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCcchHHHHHHHHHHhhcChhhhhchhhHhhHHHHHHHHHhCCcchHhHHHHHHHhhcchhhhhhHHHHhhhhHH
Q 000714 1208 YLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQP 1287 (1335)
Q Consensus 1208 ~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 1287 (1335)
++|++++++.+..+.++|++||.|++.+++.++.+|++||+.|||+|++.+|++|+++|++||++|++|+++.|+|||+|
T Consensus 1198 vLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~p 1277 (2102)
T PLN03200 1198 YLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQP 1277 (2102)
T ss_pred HHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCchhHHHHHHHHHHHHhhcCCCCccchh
Q 000714 1288 LVEILNTGLEREQHAAIAALVRLLSENPSRALAD 1321 (1335)
Q Consensus 1288 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1321 (1335)
|++||+++++..|++++.||+||.+||++|+..-
T Consensus 1278 Lv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~ 1311 (2102)
T PLN03200 1278 LVEMLNTGSESEQHAAIGALIKLSSGNPSKALAI 1311 (2102)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHcCCCChHhHh
Confidence 9999999999999999999999999999987654
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.1e-106 Score=1054.62 Aligned_cols=1173 Identities=24% Similarity=0.281 Sum_probs=983.3
Q ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCc--h-h
Q 000714 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--E-L 98 (1335)
Q Consensus 22 v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~--~-~ 98 (1335)
|..++..|++ ++..-|+.|+..|.+++.. +..+..|. ..|++|+|+.+|++++.+.|..|+.+|.+++.++ + .
T Consensus 60 IP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-e~nk~~Iv-~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 60 MPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-EDLRVKVL-LGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC-HHHHHHHH-HcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 4455666653 4567888999999999994 56666665 4899999999999999999999999999999764 3 3
Q ss_pred HHH-HHhcCCcHHHHHhhcCCCH---HHHHHHHHHHHHhhccCCCCcccc-chhhhcCChHHHHHHhhcCCCChhhHHHH
Q 000714 99 RVK-VLLGGCIPPLLGLLKSSSA---EGQIAAAKTIYAVSQGGAKDYVGS-KIFSTEGVVPVLWEQLKNGLKSGNVVDNL 173 (1335)
Q Consensus 99 ~~~-i~~~g~I~~Lv~lL~s~~~---e~~~~Aa~aL~~Ls~~~~~d~~~~-~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~ 173 (1335)
+.. ++..|+||+|+.+|++++. -.+..++.+|++++. ...+. +.+++.|++|.|+++|++++ +..+..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~----~~en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~e 208 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCG----STDGFWSATLEAGGVDILVKLLSSGN---SDAQAN 208 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhc----CccchHHHHHHcCCHHHHHHHHcCCC---HHHHHH
Confidence 434 4568999999999998752 246677899999999 44443 56789999999999998753 357778
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-ChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC
Q 000714 174 LTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 252 (1335)
Q Consensus 174 a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~-~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~ 252 (1335)
++.+|.+++.+.+.....+++.|+|+.|+++|+++ ++.+|.+|+++|.+++..+++.+..+++.|++++|++++.+++.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~ 288 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSK 288 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcch
Confidence 88889888877666778899999999999999875 45899999999999998878889999999999999999986542
Q ss_pred --------HHHHHHHHHHHHhcccCCHH-------------HHHH-HHHCCChHHHHHHhcCCCccchhhhhHHHHH---
Q 000714 253 --------ASVRAEAAGALKSLSDHCKD-------------ARRE-IAGSNGIPAMINATIAPSKEFMQGEYAQALQ--- 307 (1335)
Q Consensus 253 --------~~vr~~Aa~aL~nLs~~~~e-------------~r~~-i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~--- 307 (1335)
...++.|.++|.|++.+... .... ....|+++.++..+..+. ...+
T Consensus 289 e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~---------~~~~~i~ 359 (2102)
T PLN03200 289 EFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSA---------ESTRAFD 359 (2102)
T ss_pred hhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCch---------hhhhhcc
Confidence 24689999999999963211 0011 112344444444443321 1111
Q ss_pred -HHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhH
Q 000714 308 -ENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLV 386 (1335)
Q Consensus 308 -~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~ 386 (1335)
.++.++|.|++. ++....+......++..+ +. .......++..+.++.|+.|+...+. ++
T Consensus 360 ~~~v~~~LV~Llr--------------~k~p~~vqe~V~eALasl---~g-N~~l~~~L~~~daik~LV~LL~~~~~-ev 420 (2102)
T PLN03200 360 PTVIEQILVKLLK--------------PRDTKLVQERIIEALASL---YG-NAYLSRKLNHAEAKKVLVGLITMATA-DV 420 (2102)
T ss_pred ccccHHHHHHHhC--------------CCCCchhHHHHHHHHHHh---cC-ChHHHHHHHhccchhhhhhhhccCCH-HH
Confidence 133445555554 222111011111121100 00 00000112234567889999987765 59
Q ss_pred HHHHHHHHHHHhCC-cchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCC
Q 000714 387 QERTIEALASLYGN-PLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS 465 (1335)
Q Consensus 387 q~~aa~aL~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~ 465 (1335)
|..++.+|.+++.+ .+.+..+.+.|+++.|+++|++++..+|+.++++|.+++..+++.+..|.++|+||+|+++|+++
T Consensus 421 Q~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~ 500 (2102)
T PLN03200 421 QEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG 500 (2102)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC
Confidence 99999999999865 68899999999999999999999999999999999999998888888999999999999999999
Q ss_pred CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHH
Q 000714 466 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL 545 (1335)
Q Consensus 466 ~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~L 545 (1335)
+.++|++|+|+|.||+.++++.+..+.++|+|++|+++|++++.+.|+.|+++|.||..+.+ ...+++|+.+
T Consensus 501 ~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d--------~~~I~~Lv~L 572 (2102)
T PLN03200 501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD--------AATISQLTAL 572 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--------hhHHHHHHHH
Confidence 99999999999999998666667777789999999999999999999999999999987532 2245889999
Q ss_pred hhcCCHHHHHHHHHHHHHhhccC-----------CCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhh
Q 000714 546 LKNGSANGKEIAAKTLNHLIHKS-----------DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAA 614 (1335)
Q Consensus 546 L~~~~~~~k~~Aa~aL~~L~~~~-----------~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~ 614 (1335)
+.+.++..+..+..+|.++.... ..+.++.|+.|+.++++.++..+++++.+++. .+...+..+..
T Consensus 573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a---~~~d~~~avv~ 649 (2102)
T PLN03200 573 LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS---SRQDLCESLAT 649 (2102)
T ss_pred hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 99999999999999998874421 24789999999999999999999999998654 34444555778
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhh
Q 000714 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1335)
Q Consensus 615 ~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~-~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~ 693 (1335)
.+++++++.+|++++.++++.++++|.|++.+..+ ++..+++.|++++|+++|...+..+...++.++.+++... +..
T Consensus 650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~ 728 (2102)
T PLN03200 650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVA 728 (2102)
T ss_pred cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHH
Confidence 89999999999999999999999999999976444 4567799999999999999999999999999999999654 333
Q ss_pred HHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHH----HHHHHCCChHHHHHHhhcCChhh--HHHHHHHHH
Q 000714 694 EVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVS----EKAIAEEIILPATRVLCEGTISG--KTLAAAAIA 767 (1335)
Q Consensus 694 ~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~----~~~~~~g~v~~L~~ll~~~~~~~--k~~A~~aL~ 767 (1335)
. .+..+|++++|+++++++++++|++|+|+|.+|+...+.. ..+...|.+.+|+.++...+.+. -.+|..+|.
T Consensus 729 ~-ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~ 807 (2102)
T PLN03200 729 A-EALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALA 807 (2102)
T ss_pred H-HHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3 5888999999999999999999999999999999755533 34458999999999999888884 345888999
Q ss_pred HHhhcCCCch----hHHHHHHhhccHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCCCCCCCCCcchhhhcccccchhhh
Q 000714 768 RLLHSRKIDY----TITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIV 843 (1335)
Q Consensus 768 ~Ll~~~~~~~----~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~ 843 (1335)
.+++...... .....+...+.+..+|.++.+....++ ..|++ +|++.|++||.+++ .+++..++|+++++
T Consensus 808 ~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~-~kai~---il~~~~~~~~~~~~--~~~~~~~~~~~~~~ 881 (2102)
T PLN03200 808 LLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQ-DKAIE---ILSRLCRDQPVVLG--DLIANASKCISSLA 881 (2102)
T ss_pred HHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHH-HHHHH---HHHHHhccChhHHH--HHHhcccchHHHHH
Confidence 9988422111 123345667999999999966654444 55554 58999999999999 99999999999999
Q ss_pred hhhhcCChh------------------------------hHHHHHHHHHHhccCCCCcc-------------------c-
Q 000714 844 SSIADATPL------------------------------LQDKAIEILSRLCRDQPAVL-------------------G- 873 (1335)
Q Consensus 844 ~~i~~~~~~------------------------------~~~~~~~iL~~l~~~~~~~~-------------------g- 873 (1335)
+++++++++ ....+..+++|+.++++... +
T Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (2102)
T PLN03200 882 DRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGD 961 (2102)
T ss_pred HHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCC
Confidence 999999866 33344558999999776622 1
Q ss_pred -----hhhhcccccHHHHHHHhhcCCCchhhh---hhHHHHHHhhccc-----cchhhcccccccchhHHHHHHHhhhhc
Q 000714 874 -----DEVTGASGCISSIARRVISCTNPKVKI---GGAALLICAAKVN-----HQRIVEDLNHSNSCAPLIQSLVTMLSV 940 (1335)
Q Consensus 874 -----~~i~~~g~~~~~~~~~~l~s~~~~~k~---~a~~~~i~~~k~~-----~~~~~~~~~~~~~~a~~i~~l~~~~~~ 940 (1335)
++....|++++.|+++.|+|+|.++|. +|++..+.+.|+. +|..++|.+..|+|++++++||++.+.
T Consensus 962 ~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~ 1041 (2102)
T PLN03200 962 DFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDV 1041 (2102)
T ss_pred cccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhh
Confidence 278889999999999999999999998 9999999999877 999999999999999999999999999
Q ss_pred ccCCc-----------cccCCCchh-------------------------------------------------hhHHhh
Q 000714 941 VEASP-----------LRNQGNDDK-------------------------------------------------EAISIY 960 (1335)
Q Consensus 941 ~~~~~-----------~~~~~~~~~-------------------------------------------------~~~~~~ 960 (1335)
.++++ |+|++.+|| |||+++
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~ 1121 (2102)
T PLN03200 1042 VRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLV 1121 (2102)
T ss_pred hcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhcc
Confidence 99996 788888888 999999
Q ss_pred cCCc----------hhhccCCccccCcchhc-----------hhhHHHHHHHHHhcCCCccchhHhhcchhHHhHHHhhc
Q 000714 961 RYTS----------EEARNGGESESSTAVIF-----------GENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISD 1019 (1335)
Q Consensus 961 ~~~~----------~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~ 1019 (1335)
|+|| ||||+|+|+|+.||.++ +++.|+..|..|+..+++||..|+|+|++++|++|++.
T Consensus 1122 ~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvLSl 1201 (2102)
T PLN03200 1122 RNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSL 1201 (2102)
T ss_pred ccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999 99999999999999999 36799999999999999999999999999999999999
Q ss_pred cccccccccccccchhHHHHHHHHHHhcchhhhhhhhhhchHHHHHHHhcccchhhhHHHHHHHHHhhhcCCCCcchhhc
Q 000714 1020 SLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILANLLKSEESANRYFAAQAVASLVCNGSRGTLLSVA 1099 (1335)
Q Consensus 1020 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~ 1099 (1335)
++++..+...++ +|+|||.+++.++++.+.+++++|+.+|+.|++.+||.||++
T Consensus 1202 ~~s~s~e~a~~E---------lL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~a----------------- 1255 (2102)
T PLN03200 1202 GPQDSTEEAASE---------LLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARA----------------- 1255 (2102)
T ss_pred cCccchhHHHHH---------HHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHH-----------------
Confidence 977765555666 999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhhhcccccchhhhhhhhHHhhhccCCcHHHHHhhhccccccchhhhhhhhhhHHhhcCCCCCCCCchhHHH
Q 000714 1100 NSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKPIPDRPGAPFLAL 1179 (1335)
Q Consensus 1100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~ 1179 (1335)
|+++|+.+++|..+.|+++||||++|+..+.++.+. .++
T Consensus 1256 ---------------------------------------L~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~--~a~ 1294 (2102)
T PLN03200 1256 ---------------------------------------LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH--AAI 1294 (2102)
T ss_pred ---------------------------------------HHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhH--HHH
Confidence 999999999999999999999999999998777777 999
Q ss_pred HHHHHhhhcCCCcceee--eecChHHHHHHHhhCCCCcchHHHHHHHHHHhhcChhhhhchhhHhhHHHHHHHHHhCCcc
Q 000714 1180 GFLIQLAKDCPSNKIVM--VEAGALEALTKYLSLGPQDATEEAATDLLGILFSSAEIRRHESAFAAVSQLVAVLRLGGRG 1257 (1335)
Q Consensus 1180 ~~l~~~~~~~~~~~~~~--~e~~~~~~l~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1257 (1335)
.+|++|..++.+++..| ||||+++.++||||.+|+++++++++++|++||+|+++|...++.||+.+||.+|..+++.
T Consensus 1295 ~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~ 1374 (2102)
T PLN03200 1295 GALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESST 1374 (2102)
T ss_pred HHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCch
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999999998777
Q ss_pred hHhHHHHHHHhhcchhhhhhHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHhhcCCCCccc
Q 000714 1258 ARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRAL 1319 (1335)
Q Consensus 1258 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 1319 (1335)
+++.|.++|++|++.|+.|+...+|+++.|+|.++.+.++..||.|++||+|+++++|.++.
T Consensus 1375 ~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~ 1436 (2102)
T PLN03200 1375 AQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKL 1436 (2102)
T ss_pred HHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHH
Confidence 79999999999999999999999999999999999999999999999999999999977543
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-32 Score=315.70 Aligned_cols=415 Identities=20% Similarity=0.229 Sum_probs=355.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhccC-chhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~-~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
.+.++..+.+.+++.+..+...++.+.+... .....++..|.||.+|++|+ ..++.+|..|+|+|.|++.++.+....
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5566777778888889899999888755433 23344556799999999997 456999999999999999998999999
Q ss_pred HHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCH-HHHHHHHHHHHHhhccCC
Q 000714 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~-~~k~~Aa~aL~~L~~~~~ 569 (1335)
++++|++|.+++++.+++..++++|+|+|+|++.+++.+|..+.++|++++|+.++...++ ...+.+.|+|.||++..+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999998776 668999999999988653
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 000714 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1335)
Q Consensus 570 ~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~ 649 (1335)
+. |.. +.+ ..++|.|..++.+.++++...|+|+|++|+.+..+
T Consensus 228 P~-------------P~~------------------~~v------~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne 270 (514)
T KOG0166|consen 228 PS-------------PPF------------------DVV------APILPALLRLLHSTDEEVLTDACWALSYLTDGSNE 270 (514)
T ss_pred CC-------------CcH------------------HHH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 11 110 001 23589999999999999999999999999999888
Q ss_pred hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 000714 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-SPVLEVAEQATCALANL 728 (1335)
Q Consensus 650 ~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~vk~~Aa~aL~nL 728 (1335)
...++++.|+++.|+.+|.+.+..++..+.++++++..++..... .+++.|++|.|..++. +....+|++|+|++.|+
T Consensus 271 ~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq-~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNI 349 (514)
T KOG0166|consen 271 KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQ-VVINSGALPVLSNLLSSSPKESIKKEACWTISNI 349 (514)
T ss_pred HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHH-HHHhcChHHHHHHHhccCcchhHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999988865555 6999999999999999 55666999999999999
Q ss_pred h-CCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCchh
Q 000714 729 I-LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 807 (1335)
Q Consensus 729 ~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~ 807 (1335)
. .+++....+++.|.++.|+++++.+....|++|+||+.|+..++. .....++++.|.+.++.+++.-++..+ ..-
T Consensus 350 tAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~i-i~v 426 (514)
T KOG0166|consen 350 TAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKI-ILV 426 (514)
T ss_pred hcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHH-HHH
Confidence 7 577788889999999999999999999999999999999998765 445678899999999999998777333 244
Q ss_pred HHHH---HHHHHHhCCCCCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCC
Q 000714 808 ALDA---LAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 870 (1335)
Q Consensus 808 al~~---L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~ 870 (1335)
++++ |....+....... +||...+|-+++++.+.......|.++++++.+|++.|++++.+
T Consensus 427 ~Ld~l~nil~~~e~~~~~~~--n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e~~ 490 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEKNRGT--NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEEDD 490 (514)
T ss_pred HHHHHHHHHHHHHHhccccc--cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCCcc
Confidence 4444 4455543332111 78999999999999999999999999999999999999998744
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=5.9e-31 Score=282.39 Aligned_cols=419 Identities=19% Similarity=0.216 Sum_probs=351.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHh-hhccCchhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKL-CNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~L-s~~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
+|.|..-|.+.+-+.+..++.-++.+ +.......+.++++|.+|.++++|+ ....-.+..|+|+|.|+++........
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkv 152 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV 152 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEE
Confidence 45666666677777787887777765 5555555677889999999999995 556678999999999999877777788
Q ss_pred HHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCH--HHHHHHHHHHHHhhccC
Q 000714 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSA--NGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~--~~k~~Aa~aL~~L~~~~ 568 (1335)
++++|++|.++++|.+++.++++++.|+|+|++.+++.+|+.+.+.|++++++.++.+... ..-+.+.|+|.||++..
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 8999999999999999999999999999999999999999999999999999999998766 55799999999998864
Q ss_pred CCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 000714 569 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 648 (1335)
Q Consensus 569 ~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~ 648 (1335)
++ .|+ .+. + ..++|.|.+|+.+.++++...|+|++..|+.+..
T Consensus 233 nP-------------~P~-----------------w~~-i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 233 NP-------------PPD-----------------WSN-I------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred CC-------------CCc-----------------hHH-H------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 31 111 000 1 2358999999999999999999999999999977
Q ss_pred hhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000714 649 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1335)
Q Consensus 649 ~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL 728 (1335)
+....+...|..+.|+++|.+++..++..+.+.++++..++..... .++..|+++.+..+|.+....+|+.++|++.|+
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTq-viI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQ-VIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcccee-hheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 7888899999999999999999999999999999999998766555 599999999999999999999999999999999
Q ss_pred h-CCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCchh
Q 000714 729 I-LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSE 807 (1335)
Q Consensus 729 ~-~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~ 807 (1335)
. .+.+....+++.+.+|+|++++....-..|++||||+.|...+..-......++..-|.+.+|.+++.-.++.+- +-
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii-ev 433 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII-EV 433 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch-hh
Confidence 6 577777888899999999999999999999999999999998766555567888999999999999988774343 44
Q ss_pred HHHHHH---HHHHhCCC-CCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCC
Q 000714 808 ALDALA---ILSRSGGA-SGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA 870 (1335)
Q Consensus 808 al~~L~---~l~~~~~~-~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~ 870 (1335)
+++++. ...+..+- .+.-.+-|...||-++.++.|..|...+|..+++|++.|+..++.+...
T Consensus 434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 566655 33221110 0111245788999999999999999999999999999999999987654
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.1e-29 Score=272.65 Aligned_cols=439 Identities=21% Similarity=0.245 Sum_probs=354.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHH
Q 000714 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREI 277 (1335)
Q Consensus 198 I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i 277 (1335)
+..+.-+--+++...+..++...+-.... ... -+.....++..-++++.+. .++..+..+++|++- +.+++..+
T Consensus 49 lraltvL~ySDnlnlqrsaalafAeitek---~vr-~Vsres~epvl~llqs~d~-~Iq~aa~~alGnlAV-n~enk~li 122 (550)
T KOG4224|consen 49 LRALTVLKYSDNLNLQRSAALAFAEITEK---GVR-RVSRESNEPVLALLQSCDK-CIQCAAGEALGNLAV-NMENKGLI 122 (550)
T ss_pred cchheeeeeccccccchHHHHHHHHHHHH---HHH-HhhhhhhhHHHHHHhCcch-hhhhhhhhhhcccee-ccCCceEE
Confidence 44444444445556666676666544322 111 1345567788888888865 899999999999996 77999999
Q ss_pred HHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcc
Q 000714 278 AGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDS 357 (1335)
Q Consensus 278 ~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~ 357 (1335)
+..+|++.|+.-+.++. ..+|.+++.+++|+.
T Consensus 123 v~l~Gl~~Li~qmmtd~---------vevqcnaVgCitnLa--------------------------------------- 154 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDG---------VEVQCNAVGCITNLA--------------------------------------- 154 (550)
T ss_pred EeccChHHHHHHhcCCC---------cEEEeeehhhhhhhh---------------------------------------
Confidence 99999998887665532 344555555555543
Q ss_pred cccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000714 358 KAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 437 (1335)
Q Consensus 358 ~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 437 (1335)
..++++..+...|++.++.++-++.+..+|+++..+|.+
T Consensus 155 -----------------------------------------T~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLln 193 (550)
T KOG4224|consen 155 -----------------------------------------TFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLN 193 (550)
T ss_pred -----------------------------------------ccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHH
Confidence 344556677888999999998888999999999999999
Q ss_pred hhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcC--CHHHHHHhhccCChHHHHHH
Q 000714 438 LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG--GIPPLVQILESGSAKAKEDS 515 (1335)
Q Consensus 438 Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g--~I~~Lv~LL~~~~~~v~~~A 515 (1335)
++...+ +++.++.+|++|.||+++++++.++|++|+.++.|++- +...|+.+++++ .||.||+++.++++++|-+|
T Consensus 194 mThs~E-nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA 271 (550)
T KOG4224|consen 194 MTHSRE-NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQA 271 (550)
T ss_pred hhhhhh-hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHH
Confidence 987764 46778889999999999999999999999999999995 578899999998 89999999999999999999
Q ss_pred HHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHH
Q 000714 516 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDAL 595 (1335)
Q Consensus 516 a~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL 595 (1335)
.-+|+||+.+ .+++..|.++|++|.+++++++.....--....++.|++.++
T Consensus 272 ~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihp--------------------------- 323 (550)
T KOG4224|consen 272 GLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHP--------------------------- 323 (550)
T ss_pred HHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccccc---------------------------
Confidence 9999999995 889999999999999999998755443333344455554332
Q ss_pred HHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhH
Q 000714 596 KSMLSVVSFSDILREGSAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECI 674 (1335)
Q Consensus 596 ~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~-~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v 674 (1335)
.++ .-+.+.|.+.+||++|+.+ ++++|..|..+|.||+.+.+.++..+.+.|+++++..++.++.-.+
T Consensus 324 --------lNe---~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsv 392 (550)
T KOG4224|consen 324 --------LNE---VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSV 392 (550)
T ss_pred --------Ccc---cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhH
Confidence 111 1245678899999999875 6779999999999999988899999999999999999999998888
Q ss_pred HHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHH------CCChHHHH
Q 000714 675 LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIA------EEIILPAT 748 (1335)
Q Consensus 675 ~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~------~g~v~~L~ 748 (1335)
+.+...|+..++..+ +-|..+.+.|.+|.|+.+..+.+.+++-+|+.+|.|++.+.+.-..+++ .|+-..|.
T Consensus 393 qseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~ 470 (550)
T KOG4224|consen 393 QSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLA 470 (550)
T ss_pred HHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHH
Confidence 888777777766543 4455699999999999999999999999999999999988877666653 47778899
Q ss_pred HHhhcCChhhHHHHHHHHHHHhhcCC
Q 000714 749 RVLCEGTISGKTLAAAAIARLLHSRK 774 (1335)
Q Consensus 749 ~ll~~~~~~~k~~A~~aL~~Ll~~~~ 774 (1335)
+.+.++....+.-+.|.+.+|+++..
T Consensus 471 Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 471 RFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999888899999999999998643
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3e-29 Score=271.47 Aligned_cols=405 Identities=23% Similarity=0.255 Sum_probs=342.8
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccc
Q 000714 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVG 143 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~ 143 (1335)
....+++..++++.++.++..+...+++++-+.+++.-++..+++.+|+.-+.++..++|..+.+++.+++. -+..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT----~d~n 159 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLAT----FDSN 159 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhc----cccc
Confidence 345688889999999999999999999999988988888888999988877777788999999999999998 4455
Q ss_pred cchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHH
Q 000714 144 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 223 (1335)
Q Consensus 144 ~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~L 223 (1335)
+-.+...|++.+|.++-++. +..+|..++++|.||+.. ..+++.++.+|+++.|++++++++..+|..++.++.++
T Consensus 160 k~kiA~sGaL~pltrLaksk---dirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI 235 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSK---DIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI 235 (550)
T ss_pred hhhhhhccchhhhHhhcccc---hhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh
Confidence 66789999999999966554 334888999999999955 45567799999999999999999999999999999988
Q ss_pred hhcCcchhhhHhccc--cHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhh
Q 000714 224 MEEDVSVCSRVLAAD--ATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGE 301 (1335)
Q Consensus 224 a~~~~~~~~~i~~~g--~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~ 301 (1335)
+... ..+..+.+.+ .++.|+.++.++++ .++..|.-+|+++++ +.+.+..++++|++|.++++++++.
T Consensus 236 aVd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlas-dt~Yq~eiv~ag~lP~lv~Llqs~~------- 305 (550)
T KOG4224|consen 236 AVDR-RARKILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLAS-DTEYQREIVEAGSLPLLVELLQSPM------- 305 (550)
T ss_pred hhhH-HHHHHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcc-cchhhhHHHhcCCchHHHHHHhCcc-------
Confidence 7543 4667777766 99999999999987 999999999999997 6788999999999999999998864
Q ss_pred hHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCC
Q 000714 302 YAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR 381 (1335)
Q Consensus 302 ~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~ 381 (1335)
-...-..+.++.|++.
T Consensus 306 --~plilasVaCIrnisi-------------------------------------------------------------- 321 (550)
T KOG4224|consen 306 --GPLILASVACIRNISI-------------------------------------------------------------- 321 (550)
T ss_pred --hhHHHHHHHHHhhccc--------------------------------------------------------------
Confidence 1222233344444443
Q ss_pred CchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCH-HHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHH
Q 000714 382 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN-EVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS 460 (1335)
Q Consensus 382 ~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~ 460 (1335)
+|-+...|.+.|.+++||++|+.++. ++|.+|+..|++|+...+.+++.|++.|+||.+..
T Consensus 322 ------------------hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 322 ------------------HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred ------------------ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence 33444467778999999999998765 49999999999999988888999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHh-----
Q 000714 461 LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES----- 535 (1335)
Q Consensus 461 lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~----- 535 (1335)
++.++.-.+|..-..++..|+. ++..|..+.+.|.+|.|+.++.+.+.+++.+++.+|.|++.+-+++...+..
T Consensus 384 L~lD~pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~ 462 (550)
T KOG4224|consen 384 LLLDGPVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPV 462 (550)
T ss_pred HHhcCChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc
Confidence 9999999999999999999995 5778999999999999999999999999999999999999975555554432
Q ss_pred cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 536 ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 536 ~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
.|.-..|++.+.++....+-.+.|++-+|...++
T Consensus 463 ~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~ 496 (550)
T KOG4224|consen 463 QGIQGRLARFLASHELTFRHIARWTIQQLLEDHD 496 (550)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCC
Confidence 3444788889988888888999999999987665
No 7
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.6e-26 Score=267.25 Aligned_cols=403 Identities=18% Similarity=0.242 Sum_probs=339.0
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhhcCc-chhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHH
Q 000714 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1335)
Q Consensus 198 I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~ 276 (1335)
.+.++..+.+++...+..+...+..+.+... .....++..|+++.+|+.|...+...++..|+++|.|++++..+.-+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 6777888888888888888877777663322 345666777999999999987666699999999999999999999999
Q ss_pred HHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhc
Q 000714 277 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1335)
Q Consensus 277 i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~ 356 (1335)
++++|++|.++.++.+++ ..+++.|++||.|+++..+...++. -..|+
T Consensus 148 vv~agavp~fi~Ll~s~~---------~~v~eQavWALgNIagds~~~Rd~v--------------l~~g~--------- 195 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPS---------ADVREQAVWALGNIAGDSPDCRDYV--------------LSCGA--------- 195 (514)
T ss_pred cccCCchHHHHHHhcCCc---------HHHHHHHHHHHhccccCChHHHHHH--------------Hhhcc---------
Confidence 999999999999999974 8899999999999998433222221 11233
Q ss_pred ccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc-cccHHHHHHHHcCCCHHHHHHHHHHH
Q 000714 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-SEAKRLLVGLITMATNEVQEELVRAL 435 (1335)
Q Consensus 357 ~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL 435 (1335)
...|..++.......+...+..+|.++|+...-...+.. ...+|.|..++.+.++++...|+|++
T Consensus 196 --------------l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAl 261 (514)
T KOG0166|consen 196 --------------LDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWAL 261 (514)
T ss_pred --------------hHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344555555555556788999999999997654444333 56889999999999999999999999
Q ss_pred HHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc-cCChHHHHH
Q 000714 436 LKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKED 514 (1335)
Q Consensus 436 ~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~-~~~~~v~~~ 514 (1335)
.+|+.+.++..+.+++.|.+|.|+++|.+.+..++..|+.++.|+..+++...+.+.+.|++|.|..++. ++...++..
T Consensus 262 syLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 262 SYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 9999998888999999999999999999999999999999999999999999999999999999999999 445668999
Q ss_pred HHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC---------CCcHHHHHHHhcCCCc
Q 000714 515 SASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD---------TATISQLTALLTSDLP 585 (1335)
Q Consensus 515 Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~---------~~~i~~Lv~LL~s~~~ 585 (1335)
|+|++.|++.++++....+.++|.+|.|+.++++++.+.|+.|+|++.|++..++ .+.++++..+|.-.+.
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~ 421 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDV 421 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCCh
Confidence 9999999999999999999999999999999999999999999999999998874 3788899999987787
Q ss_pred chHHHHHHHHHHhhhhcC-ch----HHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 586 ESKVYVLDALKSMLSVVS-FS----DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 586 ~~k~~a~~aL~~L~~~~~-~~----~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
.+...+..++.++..... .. +.+...+.+.||+..+-.|-.+.++++-..|-..+..-+..
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 888888888888776432 11 44556677789999999999999999999999999888765
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.94 E-value=1.1e-24 Score=234.41 Aligned_cols=435 Identities=19% Similarity=0.179 Sum_probs=342.1
Q ss_pred hhHHHHHHHHHHHhcCChHHHHH-hcc---cCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhHHHHHhcCCcHH
Q 000714 37 QEKEYSLRQLLELIDTRENAFSA-VGS---HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--ELRVKVLLGGCIPP 110 (1335)
Q Consensus 37 ~ek~~Al~~L~~Ls~~~~~ar~~-i~~---~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~--~~~~~i~~~g~I~~ 110 (1335)
+.|++.+..=.+|++..+++..- |.- ...-+|.+.+-|-+.+-+.+..+..-...+-+.+ +--.+++..|+||.
T Consensus 39 qKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpR 118 (526)
T COG5064 39 QKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPR 118 (526)
T ss_pred HHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHH
Confidence 35677777766775544433332 211 1235688888888888888888888777764322 33578889999999
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhH
Q 000714 111 LLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFW 189 (1335)
Q Consensus 111 Lv~lL~-s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~ 189 (1335)
++++++ ......+..|+++|.|+++|. ...-+.+++.|++|.++.+|.+.++ .+++.+.+||.|++.++++++
T Consensus 119 fvefm~~~q~~mlqfEAaWalTNiaSGt---t~QTkvVvd~~AVPlfiqlL~s~~~---~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 119 FVEFMDEIQRDMLQFEAAWALTNIASGT---TQQTKVVVDAGAVPLFIQLLSSTED---DVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred HHHHHHhcchhHHHHHHHHHHhhhccCc---ccceEEEEeCCchHHHHHHHcCchH---HHHHHHHHHhccccCCchhHH
Confidence 999995 445556889999999999974 3345789999999999999998743 488889999999999999999
Q ss_pred HHHHhcCCHHHHHHHhccCCh--hHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 000714 190 AATVQAGGIDILVKLLTLGQS--STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1335)
Q Consensus 190 ~~i~~~g~I~~Lv~lL~s~~~--~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs 267 (1335)
..++++|++++++.++.+.-. +...++.++|+||+.+....-..-.-..++|.|.+++++.+. ++...|++++.+|+
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~-evlvDA~WAiSYls 271 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDP-EVLVDACWAISYLS 271 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHhc
Confidence 999999999999999988655 778899999999985432221222226689999999999865 99999999999999
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhh
Q 000714 268 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 347 (1335)
Q Consensus 268 ~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Ga 347 (1335)
....+.-+.+.+.|..+.|+++|.+++ ..++..+++...|+..|.
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~s---------a~iqtPalR~vGNIVTG~-------------------------- 316 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHES---------AKIQTPALRSVGNIVTGS-------------------------- 316 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCcc---------ccccCHHHHhhcCeeecC--------------------------
Confidence 877788899999999999999998864 455666666666655432
Q ss_pred hHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHH
Q 000714 348 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV 427 (1335)
Q Consensus 348 l~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 427 (1335)
+.-...+...|+++.+..+|.+....+
T Consensus 317 -----------------------------------------------------D~QTqviI~~G~L~a~~~lLs~~ke~i 343 (526)
T COG5064 317 -----------------------------------------------------DDQTQVIINCGALKAFRSLLSSPKENI 343 (526)
T ss_pred -----------------------------------------------------ccceehheecccHHHHHHHhcChhhhh
Confidence 111223455678888888888888899
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccC---ChHhHHHHHhcCCHHHHHHhh
Q 000714 428 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKWAITAAGGIPPLVQIL 504 (1335)
Q Consensus 428 ~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~---~~~~r~~i~~~g~I~~Lv~LL 504 (1335)
++.++|.+.|++.++.+..++++++.-+|+|+++|++.+-.++..|||++.|.+++ -|+.-+.+++.|.|.+|..+|
T Consensus 344 rKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L 423 (526)
T COG5064 344 RKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLL 423 (526)
T ss_pred hhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999864 355667788999999999999
Q ss_pred ccCChHHHHHHHHHHHHHhccC----------h-hhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 000714 505 ESGSAKAKEDSASILRNLCNHS----------E-DIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 505 ~~~~~~v~~~Aa~aL~nL~~~~----------~-~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~ 566 (1335)
.-.+.++-+-++.++.|+-... . .+...+.++|++..+-.+-.+.+..+-.+|-..+...-.
T Consensus 424 ~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 424 DVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred hccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 9887777777788887776431 1 345566679999998888888887777777777766543
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.90 E-value=1.7e-19 Score=223.13 Aligned_cols=529 Identities=16% Similarity=0.118 Sum_probs=377.3
Q ss_pred chhHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc---CCHHHHHHHHHHHHHh
Q 000714 16 DGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS---GSLAVKIQAATVLGSL 92 (1335)
Q Consensus 16 ~~~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s---~~~~vk~~aa~~L~~L 92 (1335)
....+.+...||.+-. +..+|.++...++.|++..++....+ +++..+..|-+.|+. .+.+.-.+...+...+
T Consensus 119 ~a~~~~~d~yiE~lYe---~~~ek~~~~~~il~La~~~~NL~~l~-~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~f 194 (708)
T PF05804_consen 119 EASINDLDEYIELLYE---DIPEKIRGTSLILQLARNPENLEELV-QNETLMSALARVLREDWKKSVELATNIIYIFFCF 194 (708)
T ss_pred cCCHHHHHHHHHHHhc---ccHHHHHHHHHHHHHhCCcchHHHHH-HhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 4458899999999974 35789999999999999666666666 478888888888875 3446667777777777
Q ss_pred hcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc---CCCCccccchhhhcCChHHHHHHhhcCCCChhh
Q 000714 93 CKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQG---GAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNV 169 (1335)
Q Consensus 93 ~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~---~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~ 169 (1335)
+.-.+.+.-+.....-..-++++.. |.|+.-.+. ..+... .......++.+-+ ....+-.+++.. + .
T Consensus 195 S~f~~fH~~l~~~kiG~l~m~iie~---Elkr~~~w~-~~l~~~~~~~~~~~~~~~~~~~--~~kk~~~l~~kQ---e-q 264 (708)
T PF05804_consen 195 SNFSQFHPILAHYKIGSLCMEIIEH---ELKRHDLWQ-EELRKKKKAAEEKPEAKKDYEK--ELKKLQTLIRKQ---E-Q 264 (708)
T ss_pred HhHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHH-HHHHhhhhhhccchhhhhhHHH--HHHHHHHHHHHH---H-H
Confidence 7555555555544433344555532 333322221 111110 0000000011100 122333333331 2 2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcC
Q 000714 170 VDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGS 249 (1335)
Q Consensus 170 v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s 249 (1335)
+...+...|.||+.+. .....+++.|.|+.|+++|.+.+.++...+..+|.+|+... +++..+.+.|+++.|++++.+
T Consensus 265 Llrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~kLl~s 342 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLLKLLPS 342 (708)
T ss_pred HHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHHHHhcC
Confidence 3335677899999654 44456889999999999999999999999999999997554 489999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhc
Q 000714 250 GNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG 329 (1335)
Q Consensus 250 ~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~ 329 (1335)
++. +.+..+.++|.||+. +++.|..+++.|.+|.|+.++..+. .+..++..|.++|...+
T Consensus 343 ~~~-~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~iLy~LS~dd~------- 402 (708)
T PF05804_consen 343 ENE-DLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN-----------FREVALKILYNLSMDDE------- 402 (708)
T ss_pred CCH-HHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHHHHHhccCHh-------
Confidence 876 899999999999996 8899999999999999999997643 45678899999986311
Q ss_pred ccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc
Q 000714 330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN 409 (1335)
Q Consensus 330 ~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~ 409 (1335)
.+.. |.....++.+++++-.+++..++..++..+.|++.++.+...+.+
T Consensus 403 -------~r~~------------------------f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~ 451 (708)
T PF05804_consen 403 -------ARSM------------------------FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE 451 (708)
T ss_pred -------hHHH------------------------HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh
Confidence 1111 111223556666655555555666778888899999999999999
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhccCChHhH
Q 000714 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSK 488 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~~~~~~r 488 (1335)
.++++.|+...-.... ......++|++.+.+..+..+. +-|..|+.++..+ +++....+.++|+||+..+.+..
T Consensus 452 g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 452 GNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHH
Confidence 9999999876533322 2244689999998766555443 5788888888754 67899999999999996555566
Q ss_pred HHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCC--HHHHHHHHHHHHHh
Q 000714 489 WAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS--ANGKEIAAKTLNHL 564 (1335)
Q Consensus 489 ~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~--~~~k~~Aa~aL~~L 564 (1335)
..+.+.+.+|-|.++|..+ .+++...++..++.++. ++++...+.+.|.++.|+.+++... .+..-+..-+++++
T Consensus 527 ~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l 605 (708)
T PF05804_consen 527 QLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL 605 (708)
T ss_pred HHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH
Confidence 6677789999999999877 45788889999999998 4899999999999999999998743 33344444444444
Q ss_pred hccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000714 565 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 644 (1335)
Q Consensus 565 ~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~ 644 (1335)
..+. +.....+...+++..+++++.+.|++++..|-.+|--++
T Consensus 606 l~h~-------------------------------------~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 606 LFHE-------------------------------------ETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred HcCh-------------------------------------HHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3321 111111233567899999999999999999999999998
Q ss_pred cCChhhHHHH
Q 000714 645 ETRKDLRESS 654 (1335)
Q Consensus 645 ~~~~~~~~~l 654 (1335)
...++....+
T Consensus 649 e~d~~w~~ri 658 (708)
T PF05804_consen 649 EYDEEWAERI 658 (708)
T ss_pred HhCHHHHHHh
Confidence 7766644443
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.88 E-value=1.2e-18 Score=215.56 Aligned_cols=518 Identities=14% Similarity=0.126 Sum_probs=369.4
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhh-hcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcC
Q 000714 106 GCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS-TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS 184 (1335)
Q Consensus 106 g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~-~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~ 184 (1335)
+-+...+++|-.+. ..+..++..+.+++. +..+-..++ .+-.+..|.+.|+........+.......+..++..
T Consensus 123 ~~~d~yiE~lYe~~-~ek~~~~~~il~La~----~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f 197 (708)
T PF05804_consen 123 NDLDEYIELLYEDI-PEKIRGTSLILQLAR----NPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNF 197 (708)
T ss_pred HHHHHHHHHHhccc-HHHHHHHHHHHHHhC----CcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhH
Confidence 34556677776543 447788899999999 555444444 455577888888875544444544555556666533
Q ss_pred ChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHH---HH--HHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHH
Q 000714 185 TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL---LA--CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEA 259 (1335)
Q Consensus 185 ~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~---L~--~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~A 259 (1335)
+ .+-..+.+...=..-++++.+ +++..-.+. .. ..+...+..+..+ ....+.+-.++... + .+...+
T Consensus 198 ~-~fH~~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~~~~~~~~~--~~~~kk~~~l~~kQ-e-qLlrv~ 269 (708)
T PF05804_consen 198 S-QFHPILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEEKPEAKKDY--EKELKKLQTLIRKQ-E-QLLRVA 269 (708)
T ss_pred H-HHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhccchhhhhhH--HHHHHHHHHHHHHH-H-HHHHHH
Confidence 2 232333333333333444443 233322211 10 0111111111111 11234555555553 3 566788
Q ss_pred HHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChh
Q 000714 260 AGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPA 339 (1335)
Q Consensus 260 a~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~ 339 (1335)
...|.|++. +..++..+++.|+++.|+++|.+.+ ..+.-.++..|.+||.
T Consensus 270 ~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~n---------~ellil~v~fLkkLSi-------------------- 319 (708)
T PF05804_consen 270 FYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDREN---------EELLILAVTFLKKLSI-------------------- 319 (708)
T ss_pred HHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCCC---------HHHHHHHHHHHHHHcC--------------------
Confidence 889999996 8899999999999999999997753 4455556666666554
Q ss_pred HHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHH
Q 000714 340 QVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGL 419 (1335)
Q Consensus 340 ~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~l 419 (1335)
..+++..+.+.|+++.|.++
T Consensus 320 ------------------------------------------------------------~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 320 ------------------------------------------------------------FKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred ------------------------------------------------------------CHHHHHHHHHcCCHHHHHHH
Confidence 34556677788999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHH
Q 000714 420 ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPP 499 (1335)
Q Consensus 420 L~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~ 499 (1335)
+.+.+.+.+..+++.|.||+.+.+ .+..+++.|.+|.|+.+|+++ ..+..+..+|++||. +++.|..+...+++|.
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~-~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPE-LRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQ 415 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHH-HHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHH
Confidence 999999999999999999998865 477899999999999999854 466779999999995 6889999999999999
Q ss_pred HHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC------Cc
Q 000714 500 LVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT------AT 572 (1335)
Q Consensus 500 Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~------~~ 572 (1335)
+++++-++ +++++..+++.+.||+.+ +.+.+.+.+.|+++.|++......+. ...+.+.|++.+..+ ..
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~---lLlKlIRNiS~h~~~~k~~f~~~ 491 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP---LLLKLIRNISQHDGPLKELFVDF 491 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH---HHHHHHHHHHhcCchHHHHHHHH
Confidence 99976654 666777889999999985 88999999989999999876654432 244688899887633 34
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhh
Q 000714 573 ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST--KEETQAKSASALAGIFETRKDL 650 (1335)
Q Consensus 573 i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~--~~~v~~~Aa~aL~nL~~~~~~~ 650 (1335)
+.+|+.++..++ .....++|+|.+.++...+......+.+.+.+|.|.++|.++ .+++.-.++..++.++.+ +..
T Consensus 492 i~~L~~~v~~~~--~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~ 568 (708)
T PF05804_consen 492 IGDLAKIVSSGD--SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PEC 568 (708)
T ss_pred HHHHHHHhhcCC--cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHH
Confidence 566777776543 234566666666665433323333445578899999999765 467888889999999987 778
Q ss_pred HHHHHhcCChHHHHHhhhc--CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000714 651 RESSIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1335)
Q Consensus 651 ~~~l~~~g~v~~Lv~LL~~--~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL 728 (1335)
...+++.|.++.|+.+|.. .+++.+.+.+.++..++.+.. ..+..+.+.+++..|+.++.+.+.+++..+-.+|--+
T Consensus 569 A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 569 APLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 8888999999999999965 567899999999999998854 3343466688999999999999999999999888888
Q ss_pred hC-CchHHHHH
Q 000714 729 IL-DSEVSEKA 738 (1335)
Q Consensus 729 ~~-~~~~~~~~ 738 (1335)
+. |++..+.+
T Consensus 648 ~e~d~~w~~ri 658 (708)
T PF05804_consen 648 AEYDEEWAERI 658 (708)
T ss_pred HHhCHHHHHHh
Confidence 74 66655555
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=4.2e-19 Score=213.75 Aligned_cols=422 Identities=19% Similarity=0.171 Sum_probs=305.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCCh
Q 000714 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTE 186 (1335)
Q Consensus 107 ~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~ 186 (1335)
-+|..+.+|.+.++..|..|+..|..+|++ |...+..+.+.|+||.|+.++...+. .++..++++|+||.....
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg---d~~ik~~vrqlggI~kLv~Ll~~~~~---evq~~acgaLRNLvf~~~ 307 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG---DNKIKSRVRQLGGIPKLVALLDHRND---EVQRQACGALRNLVFGKS 307 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh---hHHHHHHHHHhccHHHHHHHhcCCcH---HHHHHHHHHHHhhhcccC
Confidence 578889999999999999999999999994 67777788999999999999998754 388899999999997665
Q ss_pred h--hHHHHHhcCCHHHHHHHhcc-CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCC------------
Q 000714 187 G--FWAATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN------------ 251 (1335)
Q Consensus 187 ~--~~~~i~~~g~I~~Lv~lL~s-~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~------------ 251 (1335)
. ++.+|.+.+||+.++++|+. .+.+++...+.+||||++.+. .+..++ ...+.+|-.-+-.+.
T Consensus 308 ~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~-lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 308 TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA-LKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH-HHHHHH-HHHHHHHHHhhcccccccCCCCccccc
Confidence 5 88899999999999999997 688999999999999987632 444444 445555555442211
Q ss_pred -CHHHHHHHHHHHHhcccCCHHHHHHHHHC-CChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhc
Q 000714 252 -EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLG 329 (1335)
Q Consensus 252 -~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~-Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~ 329 (1335)
+.++...++++|+|+++...+.|+.+.++ |.|..|+..+++. ......|.+..|+|++.|.|+++.....++.=
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~---i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~- 461 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA---IQKSDLDSKSVENCVCILRNLSYRLEAEVPPK- 461 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH---HHhccccchhHHHHHHHHhhcCchhhhhcCHh-
Confidence 14678899999999999889999999986 5589999988752 23445678899999999999997433221110
Q ss_pred ccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc
Q 000714 330 QSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN 409 (1335)
Q Consensus 330 ~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~ 409 (1335)
..+.....+-. .... .+.....++....+. ..+..-.-.+-.....+....++.+
T Consensus 462 --------~~~~~~~~~~~------~~~~-------~~~~~~gcf~~k~~k----~~~~~~~~~~pe~~~~pkG~e~Lw~ 516 (717)
T KOG1048|consen 462 --------YRQVLANIARL------PGVG-------PPAESVGCFGFKKRK----SDDNCDDLPIPERATAPKGSEWLWH 516 (717)
T ss_pred --------hhhHhhccccc------ccCC-------Ccccccccccchhhh----chhcccccCCcccccCCCCceeeec
Confidence 00000000000 0000 000000000000000 0000000000011223444556777
Q ss_pred cccHHHHHHHHc-CCCHHHHHHHHHHHHHhhhccCch----hHHH-hhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 000714 410 SEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSL----WRAL-QGREGIQLLISLLGLSSEQQQECSVALLCLLSNE 483 (1335)
Q Consensus 410 ~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~Ls~~~~~~----~~~i-~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~ 483 (1335)
...++..+.+|. +.++.+.+.++.+|.||+...... +..+ .+..|.|+|+++|+.+++.+.+.++.+|+||+.
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~- 595 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR- 595 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc-
Confidence 778887666664 457789999999999998776532 2233 678899999999999999999999999999996
Q ss_pred ChHhHHHHHhcCCHHHHHHhhccCC------hHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcC-CHHHHHH
Q 000714 484 NDDSKWAITAAGGIPPLVQILESGS------AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEI 556 (1335)
Q Consensus 484 ~~~~r~~i~~~g~I~~Lv~LL~~~~------~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~-~~~~k~~ 556 (1335)
+..++..|. .++|+.||+.|..+. .++...++.+|.|+...+..+...+.+.++++.|+.+.++. ++..-+.
T Consensus 596 d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~ka 674 (717)
T KOG1048|consen 596 DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKA 674 (717)
T ss_pred Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHH
Confidence 588888887 789999999998763 57778889999999988899999999999999999998874 4566677
Q ss_pred HHHHHHHhhcc
Q 000714 557 AAKTLNHLIHK 567 (1335)
Q Consensus 557 Aa~aL~~L~~~ 567 (1335)
|...|..|...
T Consensus 675 As~vL~~lW~y 685 (717)
T KOG1048|consen 675 ASSVLDVLWQY 685 (717)
T ss_pred HHHHHHHHHHH
Confidence 77777777553
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.76 E-value=4.3e-17 Score=196.64 Aligned_cols=425 Identities=17% Similarity=0.165 Sum_probs=284.6
Q ss_pred CCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHH--H
Q 000714 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD--A 273 (1335)
Q Consensus 196 g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e--~ 273 (1335)
--++..+.+|.+.++.++.+++..+..++..+...+..+...|+|+.||.+|.+.++ +++..|+++|+||...... +
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~-evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND-EVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH-HHHHHHHHHHHhhhcccCCccc
Confidence 346788999999999999999999999999988889999999999999999999887 9999999999999976655 9
Q ss_pred HHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHH
Q 000714 274 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 353 (1335)
Q Consensus 274 r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~ 353 (1335)
+-.|.+.+||+.++++++... |..++++....|+||+..+ ..+..+.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~--------D~ev~e~iTg~LWNLSS~D--------------~lK~~ii----------- 358 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQ--------DDEVRELITGILWNLSSND--------------ALKMLII----------- 358 (717)
T ss_pred chhhhhcCChHHHHHHHHhhc--------chHHHHHHHHHHhcccchh--------------HHHHHHH-----------
Confidence 999999999999999998643 7899999999999998620 0111111
Q ss_pred hhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHH
Q 000714 354 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVR 433 (1335)
Q Consensus 354 ~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 433 (1335)
..++.+|..-.-.|.. -.+.+-.+ -+..+.++-.+++.
T Consensus 359 ----------------------------------~~al~tLt~~vI~P~S---gw~~~~~~-----~~~~~~~vf~n~tg 396 (717)
T KOG1048|consen 359 ----------------------------------TSALSTLTDNVIIPHS---GWEEEPAP-----RKAEDSTVFRNVTG 396 (717)
T ss_pred ----------------------------------HHHHHHHHHhhccccc---ccCCCCcc-----cccccceeeehhhh
Confidence 1111222211111100 00000000 11234567789999
Q ss_pred HHHHhhhccCchhHHHhhcc-cHHHHHHHhc------CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhcc
Q 000714 434 ALLKLCNNEGSLWRALQGRE-GIQLLISLLG------LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES 506 (1335)
Q Consensus 434 aL~~Ls~~~~~~~~~i~~~g-~I~~Lv~lL~------~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~ 506 (1335)
||+|++....+.++.+.++. .|..|+..++ ..+.+..++|+.+|+||+...... .-+...+.+..
T Consensus 397 cLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E--------vp~~~~~~~~~ 468 (717)
T KOG1048|consen 397 CLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE--------VPPKYRQVLAN 468 (717)
T ss_pred hhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh--------cCHhhhhHhhc
Confidence 99999998888888888765 4899998876 346789999999999999642210 11111111111
Q ss_pred CChH--H--HHHHHHHHHHHhccChhhHHHHHhcCcH--HHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHh
Q 000714 507 GSAK--A--KEDSASILRNLCNHSEDIRACVESADAV--PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL 580 (1335)
Q Consensus 507 ~~~~--v--~~~Aa~aL~nL~~~~~~~r~~i~~~g~i--~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL 580 (1335)
.+.. . ......++.. ..++.....+.+ |. +...+.+ ...||+ +.++...+.+|
T Consensus 469 ~~~~~~~~~~~~~~gcf~~------k~~k~~~~~~~~~~pe-----~~~~pkG----~e~Lw~------p~vVr~Yl~Ll 527 (717)
T KOG1048|consen 469 IARLPGVGPPAESVGCFGF------KKRKSDDNCDDLPIPE-----RATAPKG----SEWLWH------PSVVRPYLLLL 527 (717)
T ss_pred ccccccCCCcccccccccc------hhhhchhcccccCCcc-----cccCCCC----ceeeec------HHHHHHHHHHH
Confidence 0000 0 0011111111 111100000100 00 0000000 000000 12233323333
Q ss_pred -cCCCcchHHHHHHHHHHhhh-hcCchHHHHHhh-hhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc
Q 000714 581 -TSDLPESKVYVLDALKSMLS-VVSFSDILREGS-AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV 657 (1335)
Q Consensus 581 -~s~~~~~k~~a~~aL~~L~~-~~~~~~~~~~~i-~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~ 657 (1335)
.+.++.+.+.++.+|-++++ .......++..+ .++++++.|++||+.+++.+...++.+|.||+.+ ..++..+. .
T Consensus 528 ~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d-~rnk~lig-k 605 (717)
T KOG1048|consen 528 ALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD-IRNKELIG-K 605 (717)
T ss_pred HHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC-chhhhhhh-c
Confidence 34567788888888888877 345556666666 8899999999999999999999999999999998 77777665 8
Q ss_pred CChHHHHHhhhcCC------hhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCH-HHHHHHHHHHHHH
Q 000714 658 KTLWSVMKLLDVGS------ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVL-EVAEQATCALANL 728 (1335)
Q Consensus 658 g~v~~Lv~LL~~~~------~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~vk~~Aa~aL~nL 728 (1335)
++++.|+..|.+.. ++.+...+..+.++...+..+.+ .+++.+++++|+-+.++... .+-+.|...|..|
T Consensus 606 ~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAk-dl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 606 YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAK-DLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHH-HHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 89999999996643 56788888899999988888888 79999999999999988433 3333443344443
No 13
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.3e-16 Score=192.37 Aligned_cols=371 Identities=18% Similarity=0.180 Sum_probs=273.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCC---HHHHHHHHHHHHHhhccCCCCccccc
Q 000714 69 VLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS---AEGQIAAAKTIYAVSQGGAKDYVGSK 145 (1335)
Q Consensus 69 ~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~---~e~~~~Aa~aL~~Ls~~~~~d~~~~~ 145 (1335)
.++.+|... .+.+.++.+..+..+++.+..+...||+|.|+++|--++ .+.|..|-.+|.|+......+..+|+
T Consensus 201 sllsml~t~---D~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RR 277 (2195)
T KOG2122|consen 201 SLLSMLGTD---DEEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRR 277 (2195)
T ss_pred HHhhhcccC---CHHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHH
Confidence 445555444 355789999999999999999999999999999997543 56788999999999995433333344
Q ss_pred hhhhcCC-------hHHHHHHhhcCCCC-----hhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-----
Q 000714 146 IFSTEGV-------VPVLWEQLKNGLKS-----GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG----- 208 (1335)
Q Consensus 146 ~l~~~G~-------Ip~Lv~LL~~~~~~-----~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~----- 208 (1335)
.+.-.-. ...+|.+++.+... +.---..++++|..+++ .+.++..+-+-|+++.+-+++.-.
T Consensus 278 E~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhg 356 (2195)
T KOG2122|consen 278 EKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHG 356 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 3221111 22455666654211 11011246778888885 478889999999999999988542
Q ss_pred -------ChhHHHHHHHHHHHHhhcCcchhhhHh-ccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHH-HHHHHHH
Q 000714 209 -------QSSTQAHVCFLLACMMEEDVSVCSRVL-AADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD-ARREIAG 279 (1335)
Q Consensus 209 -------~~~v~~~aa~~L~~La~~~~~~~~~i~-~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e-~r~~i~~ 279 (1335)
...++..+..+|-||.+++..++..+. ..|++..+|..|.+..+ ++....+.+|+||+|.-+. .++++.+
T Consensus 357 p~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSWRAD~nmKkvLrE 435 (2195)
T KOG2122|consen 357 PETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSWRADSNMKKVLRE 435 (2195)
T ss_pred CCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccccccccHHHHHHh
Confidence 236889999999999999888877775 57999999999999876 8999999999999997654 5677778
Q ss_pred CCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccc
Q 000714 280 SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKA 359 (1335)
Q Consensus 280 ~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~ 359 (1335)
.|-+..|+.+.-...+ .......+.|||||+.. +-.++..|.+..|+++.++..|
T Consensus 436 ~GsVtaLa~~al~~~k--------EsTLKavLSALWNLSAH-------------cteNKA~iCaVDGALaFLVg~L---- 490 (2195)
T KOG2122|consen 436 TGSVTALAACALRNKK--------ESTLKAVLSALWNLSAH-------------CTENKAEICAVDGALAFLVGTL---- 490 (2195)
T ss_pred hhhHHHHHHHHHHhcc--------cchHHHHHHHHhhhhhc-------------ccccchhhhcccchHHHHHhhc----
Confidence 8999999887654332 34456678999999873 2235555655566665543332
Q ss_pred cCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000714 360 ESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLC 439 (1335)
Q Consensus 360 ~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls 439 (1335)
.+... .+ ...+.+.+.+.|+|.+
T Consensus 491 -------------------SY~~q------------------s~--------------------tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 491 -------------------SYEGQ------------------SN--------------------TLAIIESAGGILRNVS 513 (2195)
T ss_pred -------------------cccCC------------------cc--------------------hhhhhhcCccHHHHHH
Confidence 22111 00 1122223333333332
Q ss_pred ---hccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHH
Q 000714 440 ---NNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSA 516 (1335)
Q Consensus 440 ---~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa 516 (1335)
...+.+++.+++..++..|++.|++++-.+.-++|++||||+..+++..+.+.+.|+++-|..++.+.+..+-+-++
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa 593 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA 593 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence 33457788899999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 000714 517 SILRNLCNHS 526 (1335)
Q Consensus 517 ~aL~nL~~~~ 526 (1335)
.+|.||..+.
T Consensus 594 aALrNLln~R 603 (2195)
T KOG2122|consen 594 AALRNLLNFR 603 (2195)
T ss_pred HHHHHHhcCC
Confidence 9999998763
No 14
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=1e-14 Score=158.31 Aligned_cols=370 Identities=18% Similarity=0.228 Sum_probs=273.8
Q ss_pred HHHHHHHHHccCC-CchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhc---cCCHHHHHHHHHHHHHhhcCch
Q 000714 22 VAQCIEQLRQSSS-SVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR---SGSLAVKIQAATVLGSLCKENE 97 (1335)
Q Consensus 22 v~~~i~~l~~~~~-s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~---s~~~~vk~~aa~~L~~L~~~~~ 97 (1335)
+.+++..++..-+ -++|.-.-+.+|.+-++ .+.++.+.+.+.|+.+.++.++. +++..+-.++..+|..+. +
T Consensus 61 i~~~~~~i~e~i~~~~~E~s~ll~~l~d~ck-~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt---~ 136 (461)
T KOG4199|consen 61 INETVDKIKEHIGQKLEETTELLEQLADECK-KSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT---H 136 (461)
T ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh-hhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---c
Confidence 6666666643222 22333334445554344 45777777778899999888875 344456677888887775 3
Q ss_pred hHHHHHhcCCcHHHHHhhcC--CCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHH
Q 000714 98 LRVKVLLGGCIPPLLGLLKS--SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLT 175 (1335)
Q Consensus 98 ~~~~i~~~g~I~~Lv~lL~s--~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~ 175 (1335)
.+..++...+...++.+|.. ++.+.-......+..-|. .++.+|..|++.++.|.+...|....++ ..+++ +.
T Consensus 137 ~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~---~hE~nrQ~~m~~~il~Li~~~l~~~gk~-~~VRe-l~ 211 (461)
T KOG4199|consen 137 KQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI---MHEVNRQLFMELKILELILQVLNREGKT-RTVRE-LY 211 (461)
T ss_pred CCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhHHHHHHHHHcccCcc-HHHHH-HH
Confidence 45567777889999999864 445555666677777777 3667778899999999999888887766 33554 67
Q ss_pred HHHHHhhcCCh---------hhHHHHHhcCCHHHHHHHhccC-ChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHH
Q 000714 176 GALRNLSTSTE---------GFWAATVQAGGIDILVKLLTLG-QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 245 (1335)
Q Consensus 176 ~aL~nLs~~~~---------~~~~~i~~~g~I~~Lv~lL~s~-~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~ 245 (1335)
++++.|..+.+ ++-..+...|++..|++.+.-+ +|.+....+.+|..|+..++ .+..+.+.|++..|++
T Consensus 212 ~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~ 290 (461)
T KOG4199|consen 212 DAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLR 290 (461)
T ss_pred HHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHH
Confidence 88998886543 3444688889999999999864 57788888899999987765 8899999999999999
Q ss_pred HhcCCCCHHHH---HHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCc
Q 000714 246 LLGSGNEASVR---AEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLS 322 (1335)
Q Consensus 246 lL~s~~~~~vr---~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~ 322 (1335)
++.++++...| ..++..|+.|+ ++++++..|++.||.+.++.++..++. ++.+.+.++.++.-|+-
T Consensus 291 ~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~-------~p~Vi~~~~a~i~~l~L--- 359 (461)
T KOG4199|consen 291 CIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSD-------DPLVIQEVMAIISILCL--- 359 (461)
T ss_pred HHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCC-------ChHHHHHHHHHHHHHHh---
Confidence 99997765555 67788889999 488999999999999999999876542 45555555555444432
Q ss_pred hhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcc
Q 000714 323 NVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPL 402 (1335)
Q Consensus 323 ~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~ 402 (1335)
+.|+
T Consensus 360 ----------------------------------------------------------------------------R~pd 363 (461)
T KOG4199|consen 360 ----------------------------------------------------------------------------RSPD 363 (461)
T ss_pred ----------------------------------------------------------------------------cCcc
Confidence 2344
Q ss_pred hhhhhcccccHHHHHHHHcCCC--HHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000714 403 LSIKLENSEAKRLLVGLITMAT--NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 480 (1335)
Q Consensus 403 ~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nL 480 (1335)
+...+.+.|+-...++.++..+ ..+|+++++.++|+.....+++..+. ..|++.|+..-+..++.....+-.+|+.|
T Consensus 364 hsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 364 HSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred hHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 4555566666666777776543 37899999999999988888887776 68899999999999999999999999999
Q ss_pred ccCChHhHHH
Q 000714 481 SNENDDSKWA 490 (1335)
Q Consensus 481 s~~~~~~r~~ 490 (1335)
..+ ...|+.
T Consensus 443 Gc~-v~lre~ 451 (461)
T KOG4199|consen 443 GCD-VYLREE 451 (461)
T ss_pred Ccc-hhhHHH
Confidence 864 444443
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=1.2e-15 Score=188.49 Aligned_cols=362 Identities=18% Similarity=0.152 Sum_probs=273.6
Q ss_pred CchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccC---CHHHHHHHHHHHHHhhcCch-hHHHHHhcCCcHH
Q 000714 35 SVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSG---SLAVKIQAATVLGSLCKENE-LRVKVLLGGCIPP 110 (1335)
Q Consensus 35 s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~---~~~vk~~aa~~L~~L~~~~~-~~~~i~~~g~I~~ 110 (1335)
+..++++-...+++++. +++-|-.+. ..|++|.|+++|.-. +.+.|..+-.+|.++.+++. .+..-.+...++.
T Consensus 207 ~t~D~ee~ar~fLemSs-s~esCaamR-~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 207 GTDDEEEMARTFLEMSS-SPESCAAMR-RSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHL 284 (2195)
T ss_pred ccCCHHHHHHHHHHhcc-CchhhHHHH-hccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHH
Confidence 34567788899999988 555555554 589999999999743 44788999999999986543 2111111111111
Q ss_pred HH------H----hhcC-------CCHHHHH-HHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCC-----CC-
Q 000714 111 LL------G----LLKS-------SSAEGQI-AAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL-----KS- 166 (1335)
Q Consensus 111 Lv------~----lL~s-------~~~e~~~-~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~-----~~- 166 (1335)
|= . .|.. ...+.+. +|+.+|..+++ |++.|..|.+.|++..+-+|+.-.. .+
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF----DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tn 360 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF----DEEHRHAMNELGGLQAIAELLQVDHEMHGPETN 360 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc----cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCC
Confidence 11 1 1111 1234555 88899999999 9999999999999888777776431 11
Q ss_pred ---hhhHHHHHHHHHHHhhcCChhhHHHHH-hcCCHHHHHHHhccCChhHHHHHHHHHHHHhhc-CcchhhhHhccccHH
Q 000714 167 ---GNVVDNLLTGALRNLSTSTEGFWAATV-QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATK 241 (1335)
Q Consensus 167 ---~~~v~~~a~~aL~nLs~~~~~~~~~i~-~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~-~~~~~~~i~~~g~i~ 241 (1335)
...++.++..+|-||.+....++..+. ..|.++.+|..|.+...++....+.+|.||+.. +...+..+.+.|-+.
T Consensus 361 d~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVt 440 (2195)
T KOG2122|consen 361 DGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVT 440 (2195)
T ss_pred cHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHH
Confidence 123677889999999988777766543 468999999999999999999999999999854 334566677889898
Q ss_pred HHHHHh-cCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHC-CChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhc
Q 000714 242 QLLKLL-GSGNEASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISG 319 (1335)
Q Consensus 242 ~Lv~lL-~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~-Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~ 319 (1335)
.|+..- ....+ ........+||||+.++.+||..|+.- |++..|+..|.+... .....+.+++-++|.|.+.
T Consensus 441 aLa~~al~~~kE-sTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~q-----s~tLaIIEsaGGILRNVSS 514 (2195)
T KOG2122|consen 441 ALAACALRNKKE-STLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQ-----SNTLAIIESAGGILRNVSS 514 (2195)
T ss_pred HHHHHHHHhccc-chHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCC-----cchhhhhhcCccHHHHHHh
Confidence 888764 44444 667789999999999999999999874 779999999977421 0113455555555555432
Q ss_pred CCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC
Q 000714 320 GLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG 399 (1335)
Q Consensus 320 g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~ 399 (1335)
.++.
T Consensus 515 ----------------------------------------------------------------------------~IAt 518 (2195)
T KOG2122|consen 515 ----------------------------------------------------------------------------LIAT 518 (2195)
T ss_pred ----------------------------------------------------------------------------Hhhc
Confidence 1234
Q ss_pred CcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000714 400 NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCL 479 (1335)
Q Consensus 400 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~n 479 (1335)
+++.|..+.+..++..|+..|++.+-.+.-+++++||||+..+...++.+++.|+|+.|..++.+.+..+-+-++.+|.|
T Consensus 519 ~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrN 598 (2195)
T KOG2122|consen 519 CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRN 598 (2195)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 55667778888999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hccCC
Q 000714 480 LSNEN 484 (1335)
Q Consensus 480 Ls~~~ 484 (1335)
|-.+-
T Consensus 599 Lln~R 603 (2195)
T KOG2122|consen 599 LLNFR 603 (2195)
T ss_pred HhcCC
Confidence 98653
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.62 E-value=5.4e-13 Score=149.14 Aligned_cols=433 Identities=15% Similarity=0.092 Sum_probs=318.8
Q ss_pred hHHHHHHHHHHHHhCCcchhhhh----cccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHH
Q 000714 385 LVQERTIEALASLYGNPLLSIKL----ENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS 460 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~~~~i----~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~ 460 (1335)
.++.....+++..+.++.-|..+ ...+.+.+|.+...+.+.++...+.++|.|+|..+++.+..+.+.||-..+++
T Consensus 57 tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid 136 (604)
T KOG4500|consen 57 TVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVID 136 (604)
T ss_pred hhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHh
Confidence 35566666677666665434333 33577788888888888899999999999999999999999999999888888
Q ss_pred HhcCC-------CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccC-hhhH
Q 000714 461 LLGLS-------SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHS-EDIR 530 (1335)
Q Consensus 461 lL~~~-------~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~-~~~r 530 (1335)
+|+.- +.+.-.-+.+.|.|...++++.+..+++.|+++.|..++.-+ +...-+......+||...- +...
T Consensus 137 ~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~ 216 (604)
T KOG4500|consen 137 VLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLY 216 (604)
T ss_pred hhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhh
Confidence 88632 235566677899999888899999999999999999887655 4555666766677766531 2234
Q ss_pred HHHHhcCcHHHHHHHhhcCC-HHHHHHHHHHHHHhhccC-------CCCcHHHHHHHhcC-CCcchHHHHHHHHHHhh--
Q 000714 531 ACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKS-------DTATISQLTALLTS-DLPESKVYVLDALKSML-- 599 (1335)
Q Consensus 531 ~~i~~~g~i~~Lv~LL~~~~-~~~k~~Aa~aL~~L~~~~-------~~~~i~~Lv~LL~s-~~~~~k~~a~~aL~~L~-- 599 (1335)
+...+......+++++.... +...+..-..|...+... ..|-++.++.+++. .+...+.....-+...+
T Consensus 217 ~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el 296 (604)
T KOG4500|consen 217 PFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAEL 296 (604)
T ss_pred hhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhH
Confidence 44555677788888887643 444555566666665544 23566777777765 22222222222222111
Q ss_pred -h-hcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhc-----CCh
Q 000714 600 -S-VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-----GSE 672 (1335)
Q Consensus 600 -~-~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~-----~~~ 672 (1335)
. +....+..+.-......+..++.|+.|++...+..++.+++|+++. .+++..+++.+.+.+|+.++.. ++-
T Consensus 297 ~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV 375 (604)
T KOG4500|consen 297 DVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQEKDVDGNV 375 (604)
T ss_pred hhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 1 1111222233333345789999999999999999999999999998 8899999999999999999954 455
Q ss_pred hHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCch-HHHHHH-HCCChHHHHHH
Q 000714 673 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSE-VSEKAI-AEEIILPATRV 750 (1335)
Q Consensus 673 ~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~-~~~~~~-~~g~v~~L~~l 750 (1335)
..+..++.|+.++.. |..+|..+...|.++.+...++..++.+...-..+|..+....+ ...++. .-..++.|+++
T Consensus 376 ~~qhA~lsALRnl~I--Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 376 ERQHACLSALRNLMI--PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred hhHHHHHHHHHhccc--cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 678888899999884 44566679999999999999999999999888888888776655 455555 34688889999
Q ss_pred hhcCChh-hHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCCCC
Q 000714 751 LCEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGAS 822 (1335)
Q Consensus 751 l~~~~~~-~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~~~ 822 (1335)
.++.+-. +..+.-+.+..+.++.+..++. -.+..-|++...|.+.... +.+...+|+-++..++.....+
T Consensus 454 sks~D~aGv~gESnRll~~lIkHs~~kdv~-~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 454 SKSPDFAGVAGESNRLLLGLIKHSKYKDVI-LTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYLIV 524 (604)
T ss_pred hhCCccchhhhhhhHHHHHHHHhhHhhhhH-hhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhccc
Confidence 9988887 7889999999999987766654 3457888899999988876 5566789999988777755443
No 17
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.60 E-value=1.4e-12 Score=145.84 Aligned_cols=413 Identities=15% Similarity=0.131 Sum_probs=302.8
Q ss_pred HhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCC----C--CHHHHHHHHHHHHhc
Q 000714 193 VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSG----N--EASVRAEAAGALKSL 266 (1335)
Q Consensus 193 ~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~----~--~~~vr~~Aa~aL~nL 266 (1335)
++++.++.|.+...+++.++-.+.+++|.|+++.+.+++..+.+.|+-..++.+|+.. + ..+.-.-+.+.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999988888999999999977777777532 1 135566778899998
Q ss_pred ccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhh
Q 000714 267 SDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLG 346 (1335)
Q Consensus 267 s~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~G 346 (1335)
.-.+++.+..+.+.|.++.|...+--+. .+....+.......|+.. +..+
T Consensus 164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~-------qNaa~~e~ll~~f~nlls-------~~~e---------------- 213 (604)
T KOG4500|consen 164 ILDSRELRAQVADAGVLNTLAITYWIDW-------QNAALTEKLLAPFFNLLS-------FVCE---------------- 213 (604)
T ss_pred hCCcHHHHHHHHhcccHHHHHHHhhccc-------ccHHHHHHHHhccccHHH-------HHHH----------------
Confidence 8889999999999999999988764432 134455555544444332 0000
Q ss_pred hhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC-CCH
Q 000714 347 ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATN 425 (1335)
Q Consensus 347 al~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~ 425 (1335)
++.+ .+....+.-.+++++........++...+.++..+.++.++-.+.+.|.+..++++++. .+.
T Consensus 214 ------~~~~-------~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~ 280 (604)
T KOG4500|consen 214 ------MLYP-------FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDF 280 (604)
T ss_pred ------hhhh-------hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccc
Confidence 0000 01112233445666666555567788899999999999999999999999999988866 222
Q ss_pred H-------HHHHHHHHHHHhhhccCchhHHHhhcc-cHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCH
Q 000714 426 E-------VQEELVRALLKLCNNEGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 497 (1335)
Q Consensus 426 ~-------v~~~A~~aL~~Ls~~~~~~~~~i~~~g-~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I 497 (1335)
. ..+.++....-+..+++.... +...+ ..+.+++.+.+.+.+.+..+.-+++|+++ .++++..+++.|.+
T Consensus 281 t~k~d~~~l~k~~~el~vllltGDeSMq~-L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~ 358 (604)
T KOG4500|consen 281 TKKTDMLNLFKRIAELDVLLLTGDESMQK-LHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFL 358 (604)
T ss_pred cchHHHHHHHHhhhhHhhhhhcCchHHHH-HhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHH
Confidence 1 122333334444444433333 33333 57889999999999999999999999996 58889999999999
Q ss_pred HHHHHhhcc-----CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCc
Q 000714 498 PPLVQILES-----GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT 572 (1335)
Q Consensus 498 ~~Lv~LL~~-----~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~ 572 (1335)
..|+.+|.. ++.+.|..++.+|+||.-. ..+|..+..+|..++++..++...|.+...-..+|.-+.
T Consensus 359 nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~------- 430 (604)
T KOG4500|consen 359 NKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR------- 430 (604)
T ss_pred HHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH-------
Confidence 999998864 3678899999999999985 789999999999999999999988887665444443331
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHH-HHHHHHHHHHHHhcC--Chh
Q 000714 573 ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEE-TQAKSASALAGIFET--RKD 649 (1335)
Q Consensus 573 i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~-v~~~Aa~aL~nL~~~--~~~ 649 (1335)
+.+++++.-|+ ....-+..|++|.++++-. +.-..-+.+..+.++ .++
T Consensus 431 -------------d~qe~~a~eL~----------------kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd 481 (604)
T KOG4500|consen 431 -------------DSQEYIACELA----------------KNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD 481 (604)
T ss_pred -------------hchHHHHHHHh----------------cCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence 12233222222 1234588999999887654 777788888888776 344
Q ss_pred hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHc
Q 000714 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1335)
Q Consensus 650 ~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~ 687 (1335)
....+.+.|++...+..+....-..+.++..++..+..
T Consensus 482 v~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 482 VILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTES 519 (604)
T ss_pred hHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHH
Confidence 55667889999999999999888889999888877764
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=8.7e-13 Score=143.57 Aligned_cols=325 Identities=16% Similarity=0.143 Sum_probs=237.0
Q ss_pred hcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC--ChhHHHHHHHHHHHHhhc
Q 000714 149 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QSSTQAHVCFLLACMMEE 226 (1335)
Q Consensus 149 ~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~--~~~v~~~aa~~L~~La~~ 226 (1335)
+.|..|.++.++.........+-..+..+|..+....+ .+.++.|...++.+|... +.++-.....++..-+..
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQP----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 45555554444432211112232334555556654443 367799999999999764 344545455555544566
Q ss_pred CcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCH---------HHHHHHHHCCChHHHHHHhcCCCccc
Q 000714 227 DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK---------DARREIAGSNGIPAMINATIAPSKEF 297 (1335)
Q Consensus 227 ~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~---------e~r~~i~~~Ggi~~Lv~lL~~~~~e~ 297 (1335)
++.++..+++.++.+.+.+.|.......+.+....+++.|...++ ..-+.|.+.|++..|++.++..-
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~--- 254 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI--- 254 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC---
Confidence 778999999999999999777655443678889999999886332 23356677777777777765532
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHh
Q 000714 298 MQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQ 377 (1335)
Q Consensus 298 ~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~L 377 (1335)
++.
T Consensus 255 -----dp~------------------------------------------------------------------------ 257 (461)
T KOG4199|consen 255 -----DPD------------------------------------------------------------------------ 257 (461)
T ss_pred -----Ccc------------------------------------------------------------------------
Confidence 000
Q ss_pred hCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCH-HHH---HHHHHHHHHhhhccCchhHHHhhcc
Q 000714 378 FKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATN-EVQ---EELVRALLKLCNNEGSLWRALQGRE 453 (1335)
Q Consensus 378 L~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~---~~A~~aL~~Ls~~~~~~~~~i~~~g 453 (1335)
.-..+..+|..++-+.++++.+.+.|++..|++++.+++. ..| +.++..|+.|+.. +..+..|++.|
T Consensus 258 --------~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~g 328 (461)
T KOG4199|consen 258 --------SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKG 328 (461)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhc
Confidence 1112233455566677889999999999999999988554 333 4556666666654 46678899999
Q ss_pred cHHHHHHHhc--CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhh
Q 000714 454 GIQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDI 529 (1335)
Q Consensus 454 ~I~~Lv~lL~--~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~ 529 (1335)
|.+.++.++. +++|.+.+.++.+++.|+-..|++...+++.|+-...|+.++.. ...+|.+++|++.|+..++.++
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~ 408 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAEN 408 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999875 46788999999999999988999999999999999999999866 4578999999999999998899
Q ss_pred HHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 000714 530 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 567 (1335)
Q Consensus 530 r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~ 567 (1335)
+..+... +++.|+..-+..++..+..+-.+|..|..+
T Consensus 409 ~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 409 RTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred cchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 9888865 589999999998999998888899888653
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.43 E-value=5.6e-10 Score=137.95 Aligned_cols=427 Identities=17% Similarity=0.166 Sum_probs=288.9
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhc
Q 000714 37 QEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK 116 (1335)
Q Consensus 37 ~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~ 116 (1335)
+++..++..+.......+...+ -.-+.++..|++.+.+.-..++.+|..+-....... +..+..+.|...|.
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~ 87 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLT 87 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhc
Confidence 4555666655554332222222 122448888988878777778888888765433222 25577899999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcC
Q 000714 117 SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAG 196 (1335)
Q Consensus 117 s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g 196 (1335)
++++.+|..++..|.++... +......+.+.+.++.++..+...+ ..+...+..+|.+++...+.. ..+.+.+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~---~~~~~~~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~~~-~~l~~~~ 160 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARH---SEGAAQLLVDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPEGL-EQLFDSN 160 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcC---CHHHHHHhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCchhH-HHHhCcc
Confidence 99999999999999998871 2233456788999999999998763 347788999999999765443 5688888
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHH
Q 000714 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1335)
Q Consensus 197 ~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~ 276 (1335)
.+..|..++..+++.+|..+..++.+++...++....+.+.|.++.+++.+.+ +|.-++..++..|..|+. .+++.+.
T Consensus 161 ~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~-~~~g~~y 238 (503)
T PF10508_consen 161 LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE-TPHGLQY 238 (503)
T ss_pred hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc-ChhHHHH
Confidence 99999999999888999999999999987777788888899999999999998 566899999999999997 7889999
Q ss_pred HHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhc
Q 000714 277 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1335)
Q Consensus 277 i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~ 356 (1335)
+.+.|+++.|..++.....+. ....-+.-..+...++++.. +| ..+. +..
T Consensus 239 L~~~gi~~~L~~~l~~~~~dp---~~~~~~l~g~~~f~g~la~~-------------~~---~~v~---~~~-------- 288 (503)
T PF10508_consen 239 LEQQGIFDKLSNLLQDSEEDP---RLSSLLLPGRMKFFGNLARV-------------SP---QEVL---ELY-------- 288 (503)
T ss_pred HHhCCHHHHHHHHHhccccCC---cccchhhhhHHHHHHHHHhc-------------Ch---HHHH---HHH--------
Confidence 999999999999998864311 00111111112233333221 00 0000 000
Q ss_pred ccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhh-cc-ccc----HHHHHHHHcCCCHHHHHH
Q 000714 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL-EN-SEA----KRLLVGLITMATNEVQEE 430 (1335)
Q Consensus 357 ~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i-~~-~g~----i~~Lv~lL~~~~~~v~~~ 430 (1335)
| .+...+..++.+. +...+..|..+++.++++.+.+..+ .. .+. +..+-...+++..++|..
T Consensus 289 ----------p-~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r 356 (503)
T PF10508_consen 289 ----------P-AFLERLFSMLESQ-DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLR 356 (503)
T ss_pred ----------H-HHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHH
Confidence 0 1222333444443 3457899999999999988888877 33 333 444455556677899999
Q ss_pred HHHHHHHhhhccCc--h---------hHHHhhcccHH-HHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhc-CCH
Q 000714 431 LVRALLKLCNNEGS--L---------WRALQGREGIQ-LLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA-GGI 497 (1335)
Q Consensus 431 A~~aL~~Ls~~~~~--~---------~~~i~~~g~I~-~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~-g~I 497 (1335)
+..+|.++-..... . |-.....+... .+..+++.+-++++..+...|..|+.+ +-+.+.+... |.+
T Consensus 357 ~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~-~Wg~~~i~~~~gfi 435 (503)
T PF10508_consen 357 ALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ-PWGQREICSSPGFI 435 (503)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHhCccHH
Confidence 99999998433222 1 11122233344 788899999999999999999999975 4444445544 444
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHh
Q 000714 498 PPLVQILESGSAKAKEDSASILRNLC 523 (1335)
Q Consensus 498 ~~Lv~LL~~~~~~v~~~Aa~aL~nL~ 523 (1335)
.-+++--...+.+.++.=..++..|.
T Consensus 436 e~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 436 EYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred hhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 44443322334455443334444444
No 20
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=3.1e-07 Score=115.98 Aligned_cols=540 Identities=13% Similarity=0.113 Sum_probs=299.0
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCCCcccc
Q 000714 66 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGS 144 (1335)
Q Consensus 66 ~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~-s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~ 144 (1335)
.+..|+.-|.+.|.++|..|-++|.++...+. ..+.|..++. +.++++|..|+..++.+.....+.-
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l--- 72 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRL--- 72 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcC---
Confidence 45667777888899999999999998865433 5677777776 4678899999999999988211000
Q ss_pred chhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcC-ChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHH
Q 000714 145 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTS-TEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 223 (1335)
Q Consensus 145 ~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~-~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~L 223 (1335)
..=.++..-..|+..+.+.+ .+.++...+.....++.+ -+..|. +.++.|.+..+++++..|+.+..+|+.+
T Consensus 73 ~~e~~~siks~lL~~~~~E~--~~~vr~k~~dviAeia~~~l~e~WP-----ell~~L~q~~~S~~~~~rE~al~il~s~ 145 (1075)
T KOG2171|consen 73 SAEVQQSIKSSLLEIIQSET--EPSVRHKLADVIAEIARNDLPEKWP-----ELLQFLFQSTKSPNPSLRESALLILSSL 145 (1075)
T ss_pred CHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccchH-----HHHHHHHHHhcCCCcchhHHHHHHHHhh
Confidence 00112222334555555543 234665556666555543 133566 4567899999999999999999999887
Q ss_pred hhcCcchhhhHhccccHHH----HHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCC-ChHHHHHHhcCCCccch
Q 000714 224 MEEDVSVCSRVLAADATKQ----LLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSN-GIPAMINATIAPSKEFM 298 (1335)
Q Consensus 224 a~~~~~~~~~i~~~g~i~~----Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~G-gi~~Lv~lL~~~~~e~~ 298 (1335)
....+.. ..+.++. +.+-+.+++. .+|..|++++...+...+.++.....-. -+|.++..+.....
T Consensus 146 ~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~--- 216 (1075)
T KOG2171|consen 146 PETFGNT-----LQPHLDDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQ--- 216 (1075)
T ss_pred hhhhccc-----cchhHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhh---
Confidence 6433211 1333334 4444566666 5999999999988865543333333322 46766666554321
Q ss_pred hhhhHHHHHHHHHHHHHHhhcCCch--------hhhhhcccccCCCChhHHHhHhhhhHHHHHhhcc---cccCCCCCCc
Q 000714 299 QGEYAQALQENAMCALANISGGLSN--------VISSLGQSLESCSSPAQVADTLGALASALMIYDS---KAESTKPSDP 367 (1335)
Q Consensus 299 ~~~~d~~v~~~A~~aL~nLs~g~~~--------~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~---~~~s~~~~~~ 367 (1335)
..|...-..+..+|..+....+. ++..-.+...+......+. .-++..++...+. ....... -.
T Consensus 217 --~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R--~~ALe~ivs~~e~Ap~~~k~~~~-~~ 291 (1075)
T KOG2171|consen 217 --DGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIR--HLALEFLVSLSEYAPAMCKKLAL-LG 291 (1075)
T ss_pred --ccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHH--HHHHHHHHHHHHhhHHHhhhchh-hh
Confidence 11222233444555554432222 1221112222221111110 1112222211111 0000000 11
Q ss_pred hhhHHHHHHhhCCCCch---------------hHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHH
Q 000714 368 LIVEQTLVNQFKPRLPF---------------LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1335)
Q Consensus 368 ~~i~~~Lv~LL~~~~~~---------------~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 432 (1335)
..+...+..++....+. .-...|.+++-.++.+=.. ...-.-.++.+-.++.+.++.-|+.+.
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g--~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG--KQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh--hhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 11222223332221110 0122334444444321100 000112344456778899999999999
Q ss_pred HHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHH
Q 000714 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKA 511 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v 511 (1335)
.+|..++.+..+.-.... ...++..+..|+++++.+|..|+.++.-++.+-...-..-...-.+|.|+..+.+. ++++
T Consensus 370 ~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHH
Confidence 999999877654433222 24566777788999999999999999999865333333334455778899988876 7799
Q ss_pred HHHHHHHHHHHhccChhhHHHHHh--cCcHH-HHHHHhhcCCHHHHHHHHHHHHHhhccCCC-------CcHHHHHHHhc
Q 000714 512 KEDSASILRNLCNHSEDIRACVES--ADAVP-ALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTALLT 581 (1335)
Q Consensus 512 ~~~Aa~aL~nL~~~~~~~r~~i~~--~g~i~-~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-------~~i~~Lv~LL~ 581 (1335)
+.+|+.++.|++...+. ..+.. .+.+. .+..+++++++.+++.+..++...+..... ...+.|...|.
T Consensus 449 ~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~ 526 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQ 526 (1075)
T ss_pred HHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHh
Confidence 99999999999864322 12211 23444 444566778899999999999999876643 33445666666
Q ss_pred CCC-cc---hHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhh---cCCCHHHHHHHHHHHHHHhcC
Q 000714 582 SDL-PE---SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL---SSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 582 s~~-~~---~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL---~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
..+ ++ .+..+.+|++.+..-.+..... .- ....+..+..+- ...+...+.......+++|+.
T Consensus 527 n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~--a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 527 NADDKDLRELRGKTMECLSLIARAVGKEKFL-PL--AEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred CCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-Hh--HHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHH
Confidence 544 33 3444455555332211111110 00 011233333331 122445666666777777764
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.35 E-value=3.8e-09 Score=130.59 Aligned_cols=361 Identities=16% Similarity=0.129 Sum_probs=268.0
Q ss_pred HHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCH
Q 000714 388 ERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE 467 (1335)
Q Consensus 388 ~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~ 467 (1335)
+.+...|..+......... ..+..+.|...|.++++.+|..+++.+.++..+++.....+.+.+.++.++.++.+++.
T Consensus 56 ~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 56 ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH
Confidence 4445556665443322222 35677889999999999999999999999987776666667788999999999999999
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 547 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~ 547 (1335)
.+...|..+|.+|+.+ +.....+...+.++.|..++.+.+..+|.++..++.+++..+++....+.+.|.++.++..++
T Consensus 134 ~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~ 212 (503)
T PF10508_consen 134 SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD 212 (503)
T ss_pred HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999999964 666677888888999999999988899999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhhccC-------CCCcHHHHHHHhcCCCcch---HH---HHHHHHHHhhhhcCchHHHHHhhhh
Q 000714 548 NGSANGKEIAAKTLNHLIHKS-------DTATISQLTALLTSDLPES---KV---YVLDALKSMLSVVSFSDILREGSAA 614 (1335)
Q Consensus 548 ~~~~~~k~~Aa~aL~~L~~~~-------~~~~i~~Lv~LL~s~~~~~---k~---~a~~aL~~L~~~~~~~~~~~~~i~~ 614 (1335)
+.+.-+|..+...|..|+..+ ..+.++.|..++.....+. -. ..+...+++... .+..+....
T Consensus 213 ~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~--~~~~v~~~~-- 288 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV--SPQEVLELY-- 288 (503)
T ss_pred CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc--ChHHHHHHH--
Confidence 988889999999999999855 2478888998886543322 11 222344444333 222222211
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH-Hhc-CChHHHHHhh----hcCChhHHHHHHHHHHHHHcc
Q 000714 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS-IAV-KTLWSVMKLL----DVGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 615 ~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l-~~~-g~v~~Lv~LL----~~~~~~v~~~aa~aL~~L~~~ 688 (1335)
...+..+.+++.+.++..+..|..+++.++.. .+.+..+ ... +.+...++.+ .++..+++..+..++.+++..
T Consensus 289 p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 289 PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 23455666777889999999999999999977 5655555 333 3444444444 556778899999999999754
Q ss_pred Chh--hhHH--------HHHhCCChH-HHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHH-HCCChHHHHHHhhcCCh
Q 000714 689 VRE--NREV--------AAVARDALS-PLVVLAGSPVLEVAEQATCALANLILDSEVSEKAI-AEEIILPATRVLCEGTI 756 (1335)
Q Consensus 689 ~~~--~~~~--------~i~~~g~i~-~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~-~~g~v~~L~~ll~~~~~ 756 (1335)
.+. ..++ .....+-.. .++.+++.+=+++|..+-..|..|+..+-..+.+. ..|.++-|+.-..+.+.
T Consensus 368 ~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 368 GTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 443 1211 123344444 67788888889999999999999998877777776 45666666655444333
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.34 E-value=4e-09 Score=132.76 Aligned_cols=495 Identities=16% Similarity=0.161 Sum_probs=335.7
Q ss_pred CCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHH
Q 000714 34 SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG 113 (1335)
Q Consensus 34 ~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~ 113 (1335)
.+..+|.+++..|..+.-.+... ..+++.++.++.+.+...|.-+--++..+...++.-..+ ++..+.+
T Consensus 18 ~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~k 86 (526)
T PF01602_consen 18 IDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQK 86 (526)
T ss_dssp THHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHH
Confidence 36678888999998886533322 356788899999999999887777777776555442222 5778888
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHH
Q 000714 114 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 193 (1335)
Q Consensus 114 lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~ 193 (1335)
-|.++++..|..|+.+|.+++. ..+. .-.+|.+.+++.+++ +.++..|+.++..+....+.. +.
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~~---------~~~~-~~l~~~v~~ll~~~~---~~VRk~A~~~l~~i~~~~p~~---~~ 150 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIRT---------PEMA-EPLIPDVIKLLSDPS---PYVRKKAALALLKIYRKDPDL---VE 150 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH-S---------HHHH-HHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHHHCHCC---HH
T ss_pred hhcCCCHHHHHHHHhhhhhhcc---------cchh-hHHHHHHHHHhcCCc---hHHHHHHHHHHHHHhccCHHH---HH
Confidence 8999999999999999999887 2233 235778888888653 368888888888887544433 22
Q ss_pred hcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHH
Q 000714 194 QAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 273 (1335)
Q Consensus 194 ~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~ 273 (1335)
.. .++.+.++|.+.++.++..|+.++..+ ..++.... -.-...+..|.+++...++ -.+......|..++...+..
T Consensus 151 ~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~-~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 151 DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDP-WLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSH-HHHHHHHHHHTTSTSSSHHH
T ss_pred HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccch-HHHHHHHHHHHhcccCChhh
Confidence 22 689999999999999999999988776 22221111 1123445555555566655 78999999999998766554
Q ss_pred HHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHH
Q 000714 274 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 353 (1335)
Q Consensus 274 r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~ 353 (1335)
... ...++.+..++.+. +..+...|+.++..+..... .
T Consensus 227 ~~~---~~~i~~l~~~l~s~---------~~~V~~e~~~~i~~l~~~~~------------------~------------ 264 (526)
T PF01602_consen 227 ADK---NRIIEPLLNLLQSS---------SPSVVYEAIRLIIKLSPSPE------------------L------------ 264 (526)
T ss_dssp HHH---HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHSSSHH------------------H------------
T ss_pred hhH---HHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhhcchH------------------H------------
Confidence 421 33566777777642 57788888888877654100 0
Q ss_pred hhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHc-CCCHHHHHHHH
Q 000714 354 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELV 432 (1335)
Q Consensus 354 ~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~ 432 (1335)
...+.+.|..++. .++..+|..++..+..++... ...+. .....+..+. +.+..++..++
T Consensus 265 -------------~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~--~~~v~---~~~~~~~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 265 -------------LQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSN--PPAVF---NQSLILFFLLYDDDPSIRKKAL 325 (526)
T ss_dssp -------------HHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHC--HHHHG---THHHHHHHHHCSSSHHHHHHHH
T ss_pred -------------HHhhHHHHHHHhh-cccchhehhHHHHHHHhhccc--chhhh---hhhhhhheecCCCChhHHHHHH
Confidence 0123566788887 555568999999999886654 12222 2222233444 88999999999
Q ss_pred HHHHHhhhccCchhHHHhhcccHHHHHHHh-cCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHH
Q 000714 433 RALLKLCNNEGSLWRALQGREGIQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 511 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v 511 (1335)
..|..++... +.. ..++.|...+ +.++.+.+..++..++.++...+..... .++.+++++..++..+
T Consensus 326 ~lL~~l~~~~--n~~-----~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~~ 393 (526)
T PF01602_consen 326 DLLYKLANES--NVK-----EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDYV 393 (526)
T ss_dssp HHHHHH--HH--HHH-----HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGGC
T ss_pred HHHhhccccc--chh-----hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhccccc
Confidence 9999998643 222 3577888888 4558889999999999998533322222 4678999999887778
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCCC-----CcHHHHHHHhcCCCc
Q 000714 512 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLP 585 (1335)
Q Consensus 512 ~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~-~~~~~k~~Aa~aL~~L~~~~~~-----~~i~~Lv~LL~s~~~ 585 (1335)
...+...+.++...+++.+..+ +..|++.+.+ ..+..+..++|.++..+...+. ..+..+........+
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~~-----l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~ 468 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREKI-----LKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESP 468 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHHH-----HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHH
T ss_pred cchHHHHHHHHhhcChhhhHHH-----HHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccH
Confidence 8888888888887667666543 7778888876 6677889999999988765543 222334455556677
Q ss_pred chHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhc--CCCHHHHHHHHHHHHHH
Q 000714 586 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS--STKEETQAKSASALAGI 643 (1335)
Q Consensus 586 ~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~--s~~~~v~~~Aa~aL~nL 643 (1335)
.+|.....++..+....+..+.. ...+..+..+.+ +.+.++|..|...+.=+
T Consensus 469 ~vk~~ilt~~~Kl~~~~~~~~~~------~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 469 EVKLQILTALAKLFKRNPENEVQ------NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHH------HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCchhhH------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 78889888888876544322211 123566666777 78999999988766544
No 23
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=9.8e-11 Score=133.26 Aligned_cols=252 Identities=19% Similarity=0.104 Sum_probs=199.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHH
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~ 532 (1335)
-.++.|..+|.+.+..++..++.+|..+.. ++ .++.+..++++.++.+|..++++|+.|... +..
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--~~---------~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~-~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--QD---------VFRLAIELCSSKNPIERDIGADILSQLGMA-KRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--ch---------HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccc---
Confidence 447889999999999999999999998873 33 577888899999999999999999999753 211
Q ss_pred HHhcCcHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCC---CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHH
Q 000714 533 VESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDIL 608 (1335)
Q Consensus 533 i~~~g~i~~Lv~L-L~~~~~~~k~~Aa~aL~~L~~~~~---~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~ 608 (1335)
...+++.|..+ +++.++.++..|+.+|.++..... +..+..+...+.++++.++..++.+|+.+
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---------- 155 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI---------- 155 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------
Confidence 12357888877 677889999999999999954332 23456677778888999999999999853
Q ss_pred HHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHcc
Q 000714 609 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 609 ~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~ 688 (1335)
....+++.|+.+|.++++.++..|+.+|+++....+ .+++.|+.++.+.+..++..++.+|..+-
T Consensus 156 ----~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~-- 220 (280)
T PRK09687 156 ----NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALRK-- 220 (280)
T ss_pred ----CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHccC--
Confidence 224469999999999999999999999999954323 36788999999999999999998886532
Q ss_pred ChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhh-cCChhhHHHHHHHHH
Q 000714 689 VRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLC-EGTISGKTLAAAAIA 767 (1335)
Q Consensus 689 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~-~~~~~~k~~A~~aL~ 767 (1335)
+..++|+|++.+.++. ++..++.+|.++... ..+++|.+++. ..+..++..|.++|-
T Consensus 221 ----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 3468899999999876 677888899888762 24566888886 555558999988875
Q ss_pred H
Q 000714 768 R 768 (1335)
Q Consensus 768 ~ 768 (1335)
+
T Consensus 279 ~ 279 (280)
T PRK09687 279 R 279 (280)
T ss_pred c
Confidence 3
No 24
>PRK09687 putative lyase; Provisional
Probab=99.29 E-value=2.7e-10 Score=129.67 Aligned_cols=251 Identities=16% Similarity=0.096 Sum_probs=194.9
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHh
Q 000714 371 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 450 (1335)
Q Consensus 371 ~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~ 450 (1335)
...|..++.... ..+|..++.+|..+ .....++.+..++++.++.+|..++++|..+-.....
T Consensus 25 ~~~L~~~L~d~d-~~vR~~A~~aL~~~----------~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------ 87 (280)
T PRK09687 25 DDELFRLLDDHN-SLKRISSIRVLQLR----------GGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------ 87 (280)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHhc----------CcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------
Confidence 344556664443 45899999998854 2355778889999999999999999999998543211
Q ss_pred hcccHHHHHHH-hcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhh
Q 000714 451 GREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI 529 (1335)
Q Consensus 451 ~~g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~ 529 (1335)
....++.|..+ ++++++.++..|+.+|++++...... ...+++.+...+.+.++.+|..++++|+++..
T Consensus 88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----- 157 (280)
T PRK09687 88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND----- 157 (280)
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-----
Confidence 12467888877 67788999999999999997432110 11245567777888899999999999987753
Q ss_pred HHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHH
Q 000714 530 RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILR 609 (1335)
Q Consensus 530 r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~ 609 (1335)
..+++.|+.++++.++.++..|+.+|.++ ...++..++.|+.+|.+.+++++..++.+|+.+
T Consensus 158 ------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~-~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~----------- 219 (280)
T PRK09687 158 ------EAAIPLLINLLKDPNGDVRNWAAFALNSN-KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR----------- 219 (280)
T ss_pred ------HHHHHHHHHHhcCCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc-----------
Confidence 34789999999999999999999999999 333557888999999999999999999999852
Q ss_pred HhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh-cCChhHHHHHHHHH
Q 000714 610 EGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCL 682 (1335)
Q Consensus 610 ~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~-~~~~~v~~~aa~aL 682 (1335)
....+++.|++.|.+++ ++..++.+|+++... .+++.|..++. ..++.+...+..++
T Consensus 220 ---~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-----------~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 ---KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-----------TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred ---CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----------hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 22457999999998866 677899999998743 37899999996 67777777776665
No 25
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.26 E-value=6.4e-09 Score=123.51 Aligned_cols=486 Identities=13% Similarity=0.054 Sum_probs=306.1
Q ss_pred ccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC-HHHHHHHHHHHHhcccCCHHHHHHHHHCCChH
Q 000714 206 TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARREIAGSNGIP 284 (1335)
Q Consensus 206 ~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~ 284 (1335)
-+.+++....+..-..|++.++.+.+..+++.|+++.|..+++..+. .+.+...+..+..+..........+.+.+.++
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 34555555566666667777777777788999999999999987655 46667788888888877777888999999999
Q ss_pred HHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCC
Q 000714 285 AMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKP 364 (1335)
Q Consensus 285 ~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~ 364 (1335)
.|+.++..+. ...+.+..+.++.++-...+..-..+ .
T Consensus 99 ~Ll~LLs~sD--------~~~~le~~l~~lR~Ifet~~~q~~~~-----------------------------------s 135 (678)
T KOG1293|consen 99 KLLQLLSESD--------SLNVLEKTLRCLRTIFETSKYQDKKM-----------------------------------S 135 (678)
T ss_pred HHHHHhcCcc--------hHhHHHHHHHHHHHHHhcccccccch-----------------------------------h
Confidence 9999998753 26677788888888764221110000 0
Q ss_pred CCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHH---Hhhhc
Q 000714 365 SDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL---KLCNN 441 (1335)
Q Consensus 365 ~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~---~Ls~~ 441 (1335)
.+...++..+..+.. ...+.....-..-..++++.++.+..+.+.+..+.+.-++...+...|..|..+++ ++..+
T Consensus 136 ~~~~sIi~~~s~l~s-~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~N 214 (678)
T KOG1293|consen 136 LHLKSIIVKFSLLYS-IELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRN 214 (678)
T ss_pred hhHHHHHHHHHHHHh-hhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeec
Confidence 011122333333333 11111222223333444555666777778888888877777778888999999998 66666
Q ss_pred cCchhHH----HhhcccHH--HHHHHhcCCCHHHHHHHHHHHHHhccCC--hHh--HHHHHhcCCHHH-----HHHhhcc
Q 000714 442 EGSLWRA----LQGREGIQ--LLISLLGLSSEQQQECSVALLCLLSNEN--DDS--KWAITAAGGIPP-----LVQILES 506 (1335)
Q Consensus 442 ~~~~~~~----i~~~g~I~--~Lv~lL~~~~~~v~~~A~~aL~nLs~~~--~~~--r~~i~~~g~I~~-----Lv~LL~~ 506 (1335)
++..... ..+.|..+ .+.+++++++...+..++.++..+...+ .+- .+.+.-..+=.- .+.++..
T Consensus 215 n~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~ 294 (678)
T KOG1293|consen 215 NPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMND 294 (678)
T ss_pred CchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecC
Confidence 6543322 23334444 4566788888877888888877765432 111 111111111111 1112222
Q ss_pred CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcC------CHHHHHHHHHHHHH---hhccCCCC------
Q 000714 507 GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG------SANGKEIAAKTLNH---LIHKSDTA------ 571 (1335)
Q Consensus 507 ~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~------~~~~k~~Aa~aL~~---L~~~~~~~------ 571 (1335)
+....-..++...+.+++.-..++....+...++.+++++..+ .++.+..++.-..- +.....-.
T Consensus 295 P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l 374 (678)
T KOG1293|consen 295 PGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEIL 374 (678)
T ss_pred CceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHH
Confidence 2222222333344444432234444555566677777776542 33333333222111 11111100
Q ss_pred ---cHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 000714 572 ---TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 648 (1335)
Q Consensus 572 ---~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~ 648 (1335)
+...+..+....+.+....++.++.. ....-..++.+....++..+|++++..++..++..+..+|+|+.....
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s---~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKS---FSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHH---HHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 00111111122233333333344433 222334567777788999999999999999999999999999999989
Q ss_pred hhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000714 649 DLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1335)
Q Consensus 649 ~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL 728 (1335)
+-+..+.+.|+|..+...+.+.+......+.+++.++...+.+..+......=.-..+..+..+++.+|++++-..|.||
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999877665554455555556777899999999999999999999
Q ss_pred hCCchHHHHH
Q 000714 729 ILDSEVSEKA 738 (1335)
Q Consensus 729 ~~~~~~~~~~ 738 (1335)
..+......+
T Consensus 532 ~c~~~~svdf 541 (678)
T KOG1293|consen 532 TCNSRKSVDF 541 (678)
T ss_pred hcCcHHHHHH
Confidence 8876555444
No 26
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.25 E-value=1.5e-09 Score=143.48 Aligned_cols=276 Identities=18% Similarity=0.130 Sum_probs=220.1
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
...++.|+..|.+.++.+|+.|+..|..+. ..+.++.|+..|+++++.++..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 620 APSVAELAPYLADPDPGVRRTAVAVLTETT-----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHhhhc-----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 456788999999999999999999998763 13578999999999999999999999988852111
Q ss_pred HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
..+.|...|++.++.+|..++.+|..+... -...|+..+++.++.+|..|+.+|..+.
T Consensus 685 ------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~------------~~~~l~~~L~D~d~~VR~~Av~aL~~~~---- 742 (897)
T PRK13800 685 ------PAPALRDHLGSPDPVVRAAALDVLRALRAG------------DAALFAAALGDPDHRVRIEAVRALVSVD---- 742 (897)
T ss_pred ------chHHHHHHhcCCCHHHHHHHHHHHHhhccC------------CHHHHHHHhcCCCHHHHHHHHHHHhccc----
Confidence 235788889999999999999999887532 2346788899999999999999999862
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 000714 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1335)
Q Consensus 570 ~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~ 649 (1335)
..+.|..++.+++++++..++.+|+.+.. .....++.|..++.++++.+|..|+.+|+++... +
T Consensus 743 --~~~~l~~~l~D~~~~VR~~aa~aL~~~~~------------~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~- 806 (897)
T PRK13800 743 --DVESVAGAATDENREVRIAVAKGLATLGA------------GGAPAGDAVRALTGDPDPLVRAAALAALAELGCP-P- 806 (897)
T ss_pred --CcHHHHHHhcCCCHHHHHHHHHHHHHhcc------------ccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c-
Confidence 24567888999999999999999986421 1123478899999999999999999999998643 1
Q ss_pred hHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 650 LRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 650 ~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
..+..++..|.+.+..++..++.+|..+- ....++.|+.+|++.+..||..|+.+|..+-
T Consensus 807 --------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 --------DDVAAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred --------hhHHHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 12356888899988889999998886542 2345699999999999999999999999974
Q ss_pred CCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHH
Q 000714 730 LDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIA 767 (1335)
Q Consensus 730 ~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~ 767 (1335)
.++. ... .|...+.+.+..++..|.++|-
T Consensus 867 ~~~~-a~~--------~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDPA-ARD--------ALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCHH-HHH--------HHHHHHhCCCHHHHHHHHHHHh
Confidence 3333 333 3778888888889999999885
No 27
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.3e-08 Score=115.71 Aligned_cols=416 Identities=14% Similarity=0.123 Sum_probs=281.4
Q ss_pred CCCCch--hHHHHHHHHHHHHccC-CCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHH
Q 000714 12 MEDPDG--TLASVAQCIEQLRQSS-SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATV 88 (1335)
Q Consensus 12 ~~~~~~--~~~~v~~~i~~l~~~~-~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~ 88 (1335)
.++|.. ....+.+..++++... ...+--..|+-.|.+++.+...-.... +...|..|+..|...+.+.-......
T Consensus 250 de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMr--rkniV~mLVKaLdr~n~~Ll~lv~~F 327 (791)
T KOG1222|consen 250 DEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMR--RKNIVAMLVKALDRSNSSLLTLVIKF 327 (791)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHhHHHHHHHHHcccchHHHHHHHHH
Confidence 455543 2345666666665321 122223457788889988543222222 36789999999998888888888999
Q ss_pred HHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChh
Q 000714 89 LGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGN 168 (1335)
Q Consensus 89 L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~ 168 (1335)
|..|+--.+++..+.+.|.|..|++++...+++.+...+..|.|+|+ |...++.++..|.+|.|..++.+.+...
T Consensus 328 LkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF----D~glr~KMv~~GllP~l~~ll~~d~~~~- 402 (791)
T KOG1222|consen 328 LKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF----DSGLRPKMVNGGLLPHLASLLDSDTKHG- 402 (791)
T ss_pred HHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc----cccccHHHhhccchHHHHHHhCCcccch-
Confidence 99998778889999999999999999999999999999999999999 8888999999999999999999876443
Q ss_pred hHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCCh-hHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHh
Q 000714 169 VVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQS-STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 247 (1335)
Q Consensus 169 ~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~-~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL 247 (1335)
.+...|..++.+.+. +........|+.+.+.+-++.. ++-......+.|++.. ..+...+.+-.++..|++.-
T Consensus 403 ----iA~~~lYh~S~dD~~-K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra 476 (791)
T KOG1222|consen 403 ----IALNMLYHLSCDDDA-KAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERA 476 (791)
T ss_pred ----hhhhhhhhhccCcHH-HHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHH
Confidence 366778888765443 3445566788888877766543 3333333333466533 34666677777888888765
Q ss_pred cCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhh
Q 000714 248 GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISS 327 (1335)
Q Consensus 248 ~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~ 327 (1335)
-...+ .. -...++|++.+....+..+++ -+..|...+.... +....-.|+++|+|+....-.
T Consensus 477 ~k~~D-~l---LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~--------~E~F~~EClGtlanL~v~dld---- 538 (791)
T KOG1222|consen 477 IKSRD-LL---LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDN--------SESFGLECLGTLANLKVTDLD---- 538 (791)
T ss_pred hcccc-hH---HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCc--------hHHHHHHHHHHHhhcccCCCC----
Confidence 44444 22 345688999754445656655 4556666655432 355667788888888752100
Q ss_pred hcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCc-hhHHHHHHHHHHHHhCCcchhhh
Q 000714 328 LGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLP-FLVQERTIEALASLYGNPLLSIK 406 (1335)
Q Consensus 328 L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~-~~~q~~aa~aL~~L~~~~~~~~~ 406 (1335)
-..+.. ....+|-+...+.++-. ...+-..+.+++.++.+..+...
T Consensus 539 ----------w~~ilq-----------------------~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L 585 (791)
T KOG1222|consen 539 ----------WAKILQ-----------------------SENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL 585 (791)
T ss_pred ----------HHHHHh-----------------------hccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH
Confidence 001110 11123333334444322 23455566777788888888888
Q ss_pred hcccccHHHHHHHHcCC--CHHHHHHHHHHHHHhhhccCchhHHHhhcc-cHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 000714 407 LENSEAKRLLVGLITMA--TNEVQEELVRALLKLCNNEGSLWRALQGRE-GIQLLISLLGLSSEQQQECSVALLCLLSNE 483 (1335)
Q Consensus 407 i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g-~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~ 483 (1335)
+...+.++.++++|+.. +.+.....+..+..+..+ +..++.+++.. .-..|+.++.+.+.++++-|=.+|-.++.+
T Consensus 586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 88899999999999764 445555555555565555 33445555444 445699999999999999999999999987
Q ss_pred ChHhHHHHH
Q 000714 484 NDDSKWAIT 492 (1335)
Q Consensus 484 ~~~~r~~i~ 492 (1335)
+.+....|.
T Consensus 665 d~EWAKrI~ 673 (791)
T KOG1222|consen 665 DKEWAKRIA 673 (791)
T ss_pred hHHHHHHHh
Confidence 777655554
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.22 E-value=1.9e-08 Score=119.60 Aligned_cols=455 Identities=14% Similarity=0.080 Sum_probs=267.4
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHh
Q 000714 115 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 194 (1335)
Q Consensus 115 L~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~ 194 (1335)
+-+.+++....|..-..|+..| ....+..+++.|++|.|..+++..+.... .+...+..+..+....+.....+++
T Consensus 18 L~~~dpe~lvrai~~~kN~vig---~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~-~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIG---FTDNKETNIKLGAVELLLALLSLEDGSTE-LKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhc---CCCccchhhhhcchHHHHhhccccCCchh-hhhhHHHHHHhHHhhccchHHHHHH
Confidence 3445677666777777888874 22223358999999999999998754432 3333444566666667777788999
Q ss_pred cCCHHHHHHHhccCC-hhHHHHHHHHHHHHhhcCc--chhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCH
Q 000714 195 AGGIDILVKLLTLGQ-SSTQAHVCFLLACMMEEDV--SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK 271 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~-~~v~~~aa~~L~~La~~~~--~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~ 271 (1335)
.+.++.|..+|++++ ..++.....++..+-...+ +..........+..+.-++..+.+ .....-+....++++ -+
T Consensus 94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk-~~~~l~~~~~a~~s~-~~ 171 (678)
T KOG1293|consen 94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELK-YISRLDVSRAAHLSS-TK 171 (678)
T ss_pred HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhh-hhhhhhhhhhccccc-cc
Confidence 999999999999998 7888999999987764432 122222334455555555442444 444444555566665 45
Q ss_pred HHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHH---HhhcCCchh-hhhhcccccCCCChhHHHhHhhh
Q 000714 272 DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALA---NISGGLSNV-ISSLGQSLESCSSPAQVADTLGA 347 (1335)
Q Consensus 272 e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~---nLs~g~~~~-i~~L~~l~~~~~~~~~i~~~~Ga 347 (1335)
+.+..+.++|..+.+.-++..- ...++..|+..+. ++-..++.. ...++.+.+.+..
T Consensus 172 ~hq~Il~Na~i~ekI~~l~~~~---------s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~---------- 232 (678)
T KOG1293|consen 172 DHQLILCNAGILEKINILLMYL---------SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVN---------- 232 (678)
T ss_pred hhhheeccccchhhHHHHHHhh---------hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccc----------
Confidence 7888888999888776665442 2456666666666 333222211 1111111111110
Q ss_pred hHHHHHhhcccccCCCCCCchhhHH-HHHHhhCCCCchhHHHHHHHHHHHHhCCc-----chhhhh--------------
Q 000714 348 LASALMIYDSKAESTKPSDPLIVEQ-TLVNQFKPRLPFLVQERTIEALASLYGNP-----LLSIKL-------------- 407 (1335)
Q Consensus 348 l~~ll~~l~~~~~s~~~~~~~~i~~-~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~-----~~~~~i-------------- 407 (1335)
.. ...++++.+ +...+..+..++..++.-. -.|..+
T Consensus 233 -----------------------~r~~v~rL~k~~-~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~ 288 (678)
T KOG1293|consen 233 -----------------------IRCVVTRLLKDP-DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNC 288 (678)
T ss_pred -----------------------hhhhhhhhhhCC-CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhh
Confidence 11 111222222 2223344444444443311 111111
Q ss_pred ---------------------------------cccccHHHHHHHHcC------CCHHHHHHHHHHHH---HhhhccC-c
Q 000714 408 ---------------------------------ENSEAKRLLVGLITM------ATNEVQEELVRALL---KLCNNEG-S 444 (1335)
Q Consensus 408 ---------------------------------~~~g~i~~Lv~lL~~------~~~~v~~~A~~aL~---~Ls~~~~-~ 444 (1335)
.+....+.+++++.. ..++.+.-++.-.. .++...+ .
T Consensus 289 i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~ 368 (678)
T KOG1293|consen 289 IVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEIS 368 (678)
T ss_pred heeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchh
Confidence 111112222222211 11111111110000 0000000 0
Q ss_pred hhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 445 LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 445 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
.++.+.+.-....+.......+.....+|+.++.+++......|..+.+..++.+||+++..++..++..+.++|+||..
T Consensus 369 ~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 369 LKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 11111111111222222223466777777788888876544456556677899999999999999999999999999998
Q ss_pred cChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCc
Q 000714 525 HSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSF 604 (1335)
Q Consensus 525 ~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~ 604 (1335)
.-...|..+...|+|..+..++.+.++..|..+.|+|+++....+. ..+.. .+
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---------------~~k~~---~~--------- 501 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---------------EEKFQ---LL--------- 501 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---------------HHHHH---HH---------
Confidence 7778999999999999999999999999999999999999764431 11000 00
Q ss_pred hHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000714 605 SDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 654 (1335)
Q Consensus 605 ~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l 654 (1335)
+. =....+..+..+++..+|+.+...|.|+..+..+.-+.+
T Consensus 502 ----~k-----i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 502 ----AK-----IPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred ----HH-----hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 11 124566778889999999999999999998855544443
No 29
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.1e-08 Score=116.16 Aligned_cols=387 Identities=16% Similarity=0.078 Sum_probs=264.8
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC
Q 000714 173 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE 252 (1335)
Q Consensus 173 ~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~ 252 (1335)
.+...|.||+.+... ...++....|..|++.|...+.+........|..|+-- .+++..+.+.|.++.|++++....+
T Consensus 282 va~ylLlNlAed~~~-ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~ 359 (791)
T KOG1222|consen 282 VAVYLLLNLAEDISV-ELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHP 359 (791)
T ss_pred HHHHHHHHHhhhhhH-HHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCH
Confidence 345566788744322 23478889999999999999999988888888888644 3588889999999999999988765
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccc
Q 000714 253 ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSL 332 (1335)
Q Consensus 253 ~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~ 332 (1335)
+.+......|.|++. +...|..+++.|-+|.|..++.+.+ -+.-|+..|..+|...
T Consensus 360 -dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~-----------~~~iA~~~lYh~S~dD----------- 415 (791)
T KOG1222|consen 360 -DLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDT-----------KHGIALNMLYHLSCDD----------- 415 (791)
T ss_pred -HHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCcc-----------cchhhhhhhhhhccCc-----------
Confidence 899999999999996 6789999999999999999997743 2345677777777521
Q ss_pred cCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhccccc
Q 000714 333 ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA 412 (1335)
Q Consensus 333 ~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~ 412 (1335)
+.+..++ -...++.+++.+-.++...+-...+.---+++-+..+...+.+..+
T Consensus 416 ---~~K~Mfa------------------------yTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqg 468 (791)
T KOG1222|consen 416 ---DAKAMFA------------------------YTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQG 468 (791)
T ss_pred ---HHHHHHH------------------------HHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcc
Confidence 1111111 1122444444443333322322222222467778888888888888
Q ss_pred HHHHHHH-HcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhccCChHhHHH
Q 000714 413 KRLLVGL-ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 413 i~~Lv~l-L~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
+..|+.. ++..++- ....++|++.+....+..++ .-|.-|...++.. ++.....|.++|+||.-.+-+....
T Consensus 469 L~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~i 542 (791)
T KOG1222|consen 469 LDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKI 542 (791)
T ss_pred hHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHH
Confidence 8888764 3444432 34567888888765555554 3455666667654 4567788999999998755666777
Q ss_pred HHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 000714 491 ITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
+.+...||-+-+.|+.+ ..+.+...+-+++.++++ ..+...+..+|.++.|+++++.....- +..+..+.-+
T Consensus 543 lq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDD-EfV~QiiyVF---- 616 (791)
T KOG1222|consen 543 LQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQACQEDD-EFVVQIIYVF---- 616 (791)
T ss_pred HhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHHhhcccc-hHHHHHHHHH----
Confidence 78889999999888877 456777788888998885 788888889999999999998732210 0011111100
Q ss_pred CCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhh-hhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 000714 569 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS-AANDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1335)
Q Consensus 569 ~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i-~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~ 647 (1335)
..++. + +..++-+ .+...-..+++++.+.+.++|..+-.+|--++...
T Consensus 617 --------~Q~l~----------------------H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 617 --------LQFLK----------------------H-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred --------HHHHH----------------------H-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 00010 1 1111111 22334568999999999999999999998888776
Q ss_pred hhhHHHHH
Q 000714 648 KDLRESSI 655 (1335)
Q Consensus 648 ~~~~~~l~ 655 (1335)
++-.+.+.
T Consensus 666 ~EWAKrI~ 673 (791)
T KOG1222|consen 666 KEWAKRIA 673 (791)
T ss_pred HHHHHHHh
Confidence 66555553
No 30
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.22 E-value=2.2e-08 Score=126.05 Aligned_cols=467 Identities=18% Similarity=0.172 Sum_probs=318.5
Q ss_pred HHHHhccC--ChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHH
Q 000714 201 LVKLLTLG--QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA 278 (1335)
Q Consensus 201 Lv~lL~s~--~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~ 278 (1335)
+.+.+.+. +..-+..+..-+..+.....+. .-+....++++.+.+ ...|..+--++..+...+++.-..
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l-- 79 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL-- 79 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH--
Confidence 45555555 5545554444443343222212 356778888888654 488998888888888766652222
Q ss_pred HCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhccc
Q 000714 279 GSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSK 358 (1335)
Q Consensus 279 ~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~ 358 (1335)
++..+.+-+.++ ++.++..|++++++++. +.++.
T Consensus 80 ---~~n~l~kdl~~~---------n~~~~~lAL~~l~~i~~--~~~~~-------------------------------- 113 (526)
T PF01602_consen 80 ---IINSLQKDLNSP---------NPYIRGLALRTLSNIRT--PEMAE-------------------------------- 113 (526)
T ss_dssp ---HHHHHHHHHCSS---------SHHHHHHHHHHHHHH-S--HHHHH--------------------------------
T ss_pred ---HHHHHHHhhcCC---------CHHHHHHHHhhhhhhcc--cchhh--------------------------------
Confidence 345666666665 47788899999999764 11111
Q ss_pred ccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000714 359 AESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 437 (1335)
Q Consensus 359 ~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 437 (1335)
.+.+.+.+++.+..+ .+|..|+.++..++. +|+. +... .++.+..+|.+.++.++..|+.++..
T Consensus 114 ----------~l~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~ 178 (526)
T PF01602_consen 114 ----------PLIPDVIKLLSDPSP-YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSE 178 (526)
T ss_dssp ----------HHHHHHHHHHHSSSH-HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHhcCCch-HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHH
Confidence 124445666665555 699999999999976 3432 2222 58889999999999999999999999
Q ss_pred hhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHH
Q 000714 438 LCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSAS 517 (1335)
Q Consensus 438 Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~ 517 (1335)
+ ..++.....+. ...++.|.+++...++-.+...+..|..++...+..... ...++.+..++++.++.+...++.
T Consensus 179 i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~ 253 (526)
T PF01602_consen 179 I-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIR 253 (526)
T ss_dssp H-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHH
Confidence 8 22211100111 244566666678889999999999999998765554422 346788888999889999999999
Q ss_pred HHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC--CcHHHHHHHhc-CCCcchHHHHHHH
Q 000714 518 ILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--ATISQLTALLT-SDLPESKVYVLDA 594 (1335)
Q Consensus 518 aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~--~~i~~Lv~LL~-s~~~~~k~~a~~a 594 (1335)
++..+... +. .-..+++.|..++.+.+++.|..+...|..++....+ ......+..+. ++++.++..+...
T Consensus 254 ~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 254 LIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp HHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHH
T ss_pred HHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHH
Confidence 99998764 43 2245789999999999999999999999999877621 11122233344 7888899999998
Q ss_pred HHHhhhhcCchHHHHHhhhhcchHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChh
Q 000714 595 LKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSEC 673 (1335)
Q Consensus 595 L~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL-~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~ 673 (1335)
+..+++-.+. ...++.|.+++ ...++.++..++..++.++...+..... .+..+++++....+.
T Consensus 328 L~~l~~~~n~----------~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~~~ 392 (526)
T PF01602_consen 328 LYKLANESNV----------KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISGDY 392 (526)
T ss_dssp HHHH--HHHH----------HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTGGG
T ss_pred Hhhcccccch----------hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhcccc
Confidence 8876542221 22588888888 4558889999999999998654332222 467888999888788
Q ss_pred HHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcC-CCHHHHHHHHHHHHHHhCCchH---HHHHHHCCChHHHHH
Q 000714 674 ILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALANLILDSEV---SEKAIAEEIILPATR 749 (1335)
Q Consensus 674 v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vk~~Aa~aL~nL~~~~~~---~~~~~~~g~v~~L~~ 749 (1335)
+..+....+..++..++..... .+..|++.+.+ .+++++..++|.++..+...+. ...+ +..+..
T Consensus 393 ~~~~~~~~i~~ll~~~~~~~~~------~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~-----~~~l~~ 461 (526)
T PF01602_consen 393 VSNEIINVIRDLLSNNPELREK------ILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDI-----LRSLIE 461 (526)
T ss_dssp CHCHHHHHHHHHHHHSTTTHHH------HHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHH-----HHHHHH
T ss_pred ccchHHHHHHHHhhcChhhhHH------HHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHH-----HHHHHH
Confidence 8888888999888766554332 37788888876 7788889999999988742222 2222 233555
Q ss_pred HhhcCChhhHHHHHHHHHHHhhcCC
Q 000714 750 VLCEGTISGKTLAAAAIARLLHSRK 774 (1335)
Q Consensus 750 ll~~~~~~~k~~A~~aL~~Ll~~~~ 774 (1335)
.....+..+|.....++..+....+
T Consensus 462 ~~~~~~~~vk~~ilt~~~Kl~~~~~ 486 (526)
T PF01602_consen 462 NFIEESPEVKLQILTALAKLFKRNP 486 (526)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHHHSC
T ss_pred hhccccHHHHHHHHHHHHHHHhhCC
Confidence 5555555588888888888887654
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.20 E-value=8.9e-10 Score=122.73 Aligned_cols=195 Identities=17% Similarity=0.211 Sum_probs=159.8
Q ss_pred HhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccCh
Q 000714 449 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 527 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~ 527 (1335)
+.+.+.++.|+.+|+. .++.+++.+..++.|.+. .+.++..+.+.|+++.+..+|.++++.+|+.|.++|.|++.. .
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-D 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-h
Confidence 4567889999999984 589999999999999985 688999999999999999999999999999999999999984 7
Q ss_pred hhHHHHHhcCcHHHHHHHhhcC--CHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCch
Q 000714 528 DIRACVESADAVPALLWLLKNG--SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFS 605 (1335)
Q Consensus 528 ~~r~~i~~~g~i~~Lv~LL~~~--~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~ 605 (1335)
+++..+.. .++.+++...+. +..++..+.++|.+|+...+ .
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~----------------------------------~- 128 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND----------------------------------Y- 128 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc----------------------------------h-
Confidence 88887754 577777765554 34566667777777754221 1
Q ss_pred HHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcC-ChhHHHHHHHHHHH
Q 000714 606 DILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVG-SECILVEASRCLAA 684 (1335)
Q Consensus 606 ~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~-~~~v~~~aa~aL~~ 684 (1335)
+..+ .+.++.++++|.+++..+|..+.++|.||+.+ ++....+..+++...++.++... +.+....+...+.+
T Consensus 129 ---~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 129 ---HHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFEN 202 (254)
T ss_pred ---hhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHH
Confidence 1112 23589999999999999999999999999999 88888888999999999999875 56678888888888
Q ss_pred HHcc
Q 000714 685 IFLS 688 (1335)
Q Consensus 685 L~~~ 688 (1335)
+..+
T Consensus 203 i~~~ 206 (254)
T PF04826_consen 203 INEN 206 (254)
T ss_pred HHHh
Confidence 8644
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.8e-07 Score=118.06 Aligned_cols=486 Identities=15% Similarity=0.127 Sum_probs=301.3
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccC-----CHH
Q 000714 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDH-----CKD 272 (1335)
Q Consensus 198 I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~-----~~e 272 (1335)
+..|+.-|.+++.+++..|-..+.++... ...++.|..++.+..++++|..|+-.++.+... +.+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~----------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKT----------EPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcc----------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 45567777788889999999999766433 237889999999888889999999999888753 223
Q ss_pred HHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHH
Q 000714 273 ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 352 (1335)
Q Consensus 273 ~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll 352 (1335)
++..|. ..|+..+++.+ ...++..-+..++.++.+.
T Consensus 76 ~~~sik-----s~lL~~~~~E~--------~~~vr~k~~dviAeia~~~------------------------------- 111 (1075)
T KOG2171|consen 76 VQQSIK-----SSLLEIIQSET--------EPSVRHKLADVIAEIARND------------------------------- 111 (1075)
T ss_pred HHHHHH-----HHHHHHHHhcc--------chHHHHHHHHHHHHHHHhc-------------------------------
Confidence 443332 23444444432 2444444444444433210
Q ss_pred HhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHH
Q 000714 353 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1335)
Q Consensus 353 ~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 432 (1335)
++. ..-.+.+.|.+-.++.++ ..|+.+...|.++...-.+...=.-....+.+.+.+.+.+..+|-.++
T Consensus 112 --l~e--------~WPell~~L~q~~~S~~~-~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~ 180 (1075)
T KOG2171|consen 112 --LPE--------KWPELLQFLFQSTKSPNP-SLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAV 180 (1075)
T ss_pred --ccc--------chHHHHHHHHHHhcCCCc-chhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHH
Confidence 000 011233444444444333 478999888888744211111100012334455556666666999999
Q ss_pred HHHHHhhhccCchhHHHhh-cccHHHHHHHh----cCCCHHHHHHHHHHHHHhccCChHh-HHHHHhcCCHHHHHHhhcc
Q 000714 433 RALLKLCNNEGSLWRALQG-REGIQLLISLL----GLSSEQQQECSVALLCLLSNENDDS-KWAITAAGGIPPLVQILES 506 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~-~g~I~~Lv~lL----~~~~~~v~~~A~~aL~nLs~~~~~~-r~~i~~~g~I~~Lv~LL~~ 506 (1335)
+++.......+++...... ..-+|.++..+ ..++.+.-..+..+|..+....+.. +..+.+ .|....++.++
T Consensus 181 rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n 258 (1075)
T KOG2171|consen 181 RALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKN 258 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhc
Confidence 9998887666433332222 23466666655 4566666777888888887544443 444433 55555666665
Q ss_pred C--ChHHHHHHHHHHHHHhccChhhHHHHHh--cCcHHHHHHHhhcCCH----------------HHHHHHHHHHHHhhc
Q 000714 507 G--SAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSA----------------NGKEIAAKTLNHLIH 566 (1335)
Q Consensus 507 ~--~~~v~~~Aa~aL~nL~~~~~~~r~~i~~--~g~i~~Lv~LL~~~~~----------------~~k~~Aa~aL~~L~~ 566 (1335)
. +..+|..|...|..++..-+...+.... .-.++.+..++..... .....|..+|-.++.
T Consensus 259 ~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~ 338 (1075)
T KOG2171|consen 259 KELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL 338 (1075)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh
Confidence 5 6789999999999888753332222222 2345666666654221 135678888888887
Q ss_pred cCCC-CcHHH----HHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHH
Q 000714 567 KSDT-ATISQ----LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALA 641 (1335)
Q Consensus 567 ~~~~-~~i~~----Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~ 641 (1335)
+-.+ ...++ +-.+|.+.+..-+..+.-+++.+ ..++.+.+...+ .+.++..+..|.++++.+|.+|+-+++
T Consensus 339 ~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i--~EGc~~~m~~~l--~~Il~~Vl~~l~DphprVr~AA~naig 414 (1075)
T KOG2171|consen 339 HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVI--AEGCSDVMIGNL--PKILPIVLNGLNDPHPRVRYAALNAIG 414 (1075)
T ss_pred cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HcccHHHHHHHH--HHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 7543 33333 45567777777776666666653 234444444333 556788888999999999999999999
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhhc-CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChH-HHHHHhcCCCHHHHH
Q 000714 642 GIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENREVAAVARDALS-PLVVLAGSPVLEVAE 719 (1335)
Q Consensus 642 nL~~~~~~~~~~l~~~g~v~~Lv~LL~~-~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~-~Lv~lL~~~~~~vk~ 719 (1335)
.++.+-...-..-......+.|+..+.+ .++.++..|+.++.+.+...+...- .-.=.+.+. .|..++.++++.+++
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l-~pYLd~lm~~~l~~L~~~~~~~v~e 493 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL-EPYLDGLMEKKLLLLLQSSKPYVQE 493 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHhcCCchhHHH
Confidence 9998765544444556677888888866 5668999999999999866543211 111123444 444466778999999
Q ss_pred HHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCC
Q 000714 720 QATCALANLILDSEVSEKAIAEEIILPATRVLCEGT 755 (1335)
Q Consensus 720 ~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~ 755 (1335)
.++.+++..+...+..-.---.-.++.|.+.+++.+
T Consensus 494 ~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 494 QAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 999999998853332211112445677888887766
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.19 E-value=4e-09 Score=139.49 Aligned_cols=276 Identities=17% Similarity=0.153 Sum_probs=182.1
Q ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHh
Q 000714 238 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 317 (1335)
Q Consensus 238 g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nL 317 (1335)
..++.|++.|.+++. .+|..|+.+|..+.. .+.++.|+.+|.++ +..++..|+.+|..+
T Consensus 621 ~~~~~L~~~L~D~d~-~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~---------d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 621 PSVAELAPYLADPDP-GVRRTAVAVLTETTP-----------PGFGPALVAALGDG---------AAAVRRAAAEGLREL 679 (897)
T ss_pred hhHHHHHHHhcCCCH-HHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCC---------CHHHHHHHHHHHHHH
Confidence 345566677765544 677777777766542 22556666666553 356666666666654
Q ss_pred hcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHH
Q 000714 318 SGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL 397 (1335)
Q Consensus 318 s~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L 397 (1335)
....+ ..+.|..+|.. ++..+|..++.+|..+
T Consensus 680 ~~~~~-----------------------------------------------~~~~L~~~L~~-~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 680 VEVLP-----------------------------------------------PAPALRDHLGS-PDPVVRAAALDVLRAL 711 (897)
T ss_pred HhccC-----------------------------------------------chHHHHHHhcC-CCHHHHHHHHHHHHhh
Confidence 32000 01122233333 2334666666666654
Q ss_pred hCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHH
Q 000714 398 YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALL 477 (1335)
Q Consensus 398 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL 477 (1335)
.. +....++..|++.++.+|..|+.+|..+- ..+.|..++.++++.++..++.+|
T Consensus 712 ~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~--------------~~~~l~~~l~D~~~~VR~~aa~aL 766 (897)
T PRK13800 712 RA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD--------------DVESVAGAATDENREVRIAVAKGL 766 (897)
T ss_pred cc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc--------------CcHHHHHHhcCCCHHHHHHHHHHH
Confidence 21 12345677788888888888888877641 124466778888888888888888
Q ss_pred HHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHH
Q 000714 478 CLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIA 557 (1335)
Q Consensus 478 ~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~A 557 (1335)
..+..... ..++.|..+++++++.+|..|+.+|.++... ...++.++..+++.++.+|..|
T Consensus 767 ~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL~d~d~~VR~~A 827 (897)
T PRK13800 767 ATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAELGCP----------PDDVAAATAALRASAWQVRQGA 827 (897)
T ss_pred HHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----------chhHHHHHHHhcCCChHHHHHH
Confidence 88874211 2467788888888888888888888887542 2234567777888888888888
Q ss_pred HHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHH
Q 000714 558 AKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSA 637 (1335)
Q Consensus 558 a~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa 637 (1335)
+.+|..+. +...++.|+.+|.+.+..++..++.+|+.+ . ......+.|...+++.++.++..|.
T Consensus 828 a~aL~~l~---~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~----------~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 828 ARALAGAA---ADVAVPALVEALTDPHLDVRKAAVLALTRW---P----------GDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHhcc---ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---C----------CCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88887763 345678888888888888888888888753 1 0123477888888889999999999
Q ss_pred HHHHH
Q 000714 638 SALAG 642 (1335)
Q Consensus 638 ~aL~n 642 (1335)
.+|..
T Consensus 892 ~aL~~ 896 (897)
T PRK13800 892 RALAH 896 (897)
T ss_pred HHHhh
Confidence 88863
No 34
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=1.8e-09 Score=106.84 Aligned_cols=117 Identities=33% Similarity=0.407 Sum_probs=109.7
Q ss_pred HhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChh
Q 000714 449 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 528 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~ 528 (1335)
+.+.|+++.|+++|++++..+++.++++|.+++..+++.+..+.+.|+++.++++|.+++++++..++++|+||+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 56789999999999999999999999999999987788899999999999999999999999999999999999998777
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 000714 529 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1335)
Q Consensus 529 ~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~ 565 (1335)
.+..+.+.|+++.|++++.+.+..+++.++++|++++
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 8888889999999999999999999999999999985
No 35
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.06 E-value=1.4e-08 Score=113.19 Aligned_cols=190 Identities=21% Similarity=0.224 Sum_probs=157.8
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHh
Q 000714 371 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 450 (1335)
Q Consensus 371 ~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~ 450 (1335)
...|+.+|+...+..+|+.+..++++.+.++.++..+.+.|+++.+..+|..+++.+++.|+.+|.|++...++ ...|.
T Consensus 14 l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en-~~~Ik 92 (254)
T PF04826_consen 14 LQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN-QEQIK 92 (254)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh-HHHHH
Confidence 35567777777666799999999999999999999999999999999999999999999999999999887655 33343
Q ss_pred hcccHHHHHHHhcCC--CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChh
Q 000714 451 GREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED 528 (1335)
Q Consensus 451 ~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~ 528 (1335)
..++.+.+...+. +..+|..++.+|.||+. .++.+..+.. .++.++.+|.+++..+|.++.++|.||+. ++.
T Consensus 93 --~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~ 166 (254)
T PF04826_consen 93 --MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPD 166 (254)
T ss_pred --HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHH
Confidence 3577777755443 67899999999999985 4555555543 79999999999999999999999999999 588
Q ss_pred hHHHHHhcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhcc
Q 000714 529 IRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHK 567 (1335)
Q Consensus 529 ~r~~i~~~g~i~~Lv~LL~~~-~~~~k~~Aa~aL~~L~~~ 567 (1335)
....+..+++...++.++... +.+.-..+.....|+...
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 888888888999999999886 455567777777777543
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.03 E-value=3e-09 Score=105.18 Aligned_cols=118 Identities=25% Similarity=0.374 Sum_probs=108.9
Q ss_pred hcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChH
Q 000714 407 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 486 (1335)
Q Consensus 407 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~ 486 (1335)
+.+.|+++.++.++.+.+++++..++.+|.+++...+.....+.+.|+++.++++|.++++.++..++++|+||+...+.
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 44678999999999999999999999999999998777788888889999999999999999999999999999987667
Q ss_pred hHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 487 ~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
.+..+.+.|+++.+++++.+++.++++.++++|.+|+.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 78888999999999999999999999999999999873
No 37
>PTZ00429 beta-adaptin; Provisional
Probab=98.99 E-value=1.1e-05 Score=102.69 Aligned_cols=432 Identities=15% Similarity=0.073 Sum_probs=281.3
Q ss_pred cCCHHHHHHHhccCChhHHHHHHH-HHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHH
Q 000714 195 AGGIDILVKLLTLGQSSTQAHVCF-LLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 273 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~~~v~~~aa~-~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~ 273 (1335)
.|-+..|-+.|.+.+..-+..+.+ +++.++.+. +. ...++..++++.+.+ .++|...--.|.+.+..+++.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~-Dv------S~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR-DV------SYLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC-Cc------hHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHH
Confidence 456677778888877766666665 444443332 22 345667788888765 589999999998888655553
Q ss_pred HHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHH
Q 000714 274 RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALM 353 (1335)
Q Consensus 274 r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~ 353 (1335)
--. ++..+.+-+.++ ++.++-.|+++++++.. +.++..
T Consensus 103 alL-----aINtl~KDl~d~---------Np~IRaLALRtLs~Ir~--~~i~e~-------------------------- 140 (746)
T PTZ00429 103 ALL-----AVNTFLQDTTNS---------SPVVRALAVRTMMCIRV--SSVLEY-------------------------- 140 (746)
T ss_pred HHH-----HHHHHHHHcCCC---------CHHHHHHHHHHHHcCCc--HHHHHH--------------------------
Confidence 211 344555555554 47888888888877543 111111
Q ss_pred hhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHHHcCCCHHHHHHHH
Q 000714 354 IYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1335)
Q Consensus 354 ~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 432 (1335)
+...+.+.+...+ .-+|..|+.++.+++. +++ .+.+.+.++.|.++|.+.++.|..+|+
T Consensus 141 ----------------l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl 200 (746)
T PTZ00429 141 ----------------TLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAA 200 (746)
T ss_pred ----------------HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHH
Confidence 1233444454433 4599999999999987 343 334567888999999999999999999
Q ss_pred HHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHH
Q 000714 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 512 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~ 512 (1335)
.+|..++...+.... ...+.+..|+..+...++-.|.....+|.... +...... ...+..+...|++.++.+.
T Consensus 201 ~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~---P~~~~e~--~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 201 AIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQR---PSDKESA--ETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred HHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC---CCCcHHH--HHHHHHHHHHhcCCCHHHH
Confidence 999999765543222 12355677777777777777777777775543 2211111 2356777888889999999
Q ss_pred HHHHHHHHHHhccC-hhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHH---hcCCCcchH
Q 000714 513 EDSASILRNLCNHS-EDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTAL---LTSDLPESK 588 (1335)
Q Consensus 513 ~~Aa~aL~nL~~~~-~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~L---L~s~~~~~k 588 (1335)
-.|+.++.++.... ++....+. ....++|+.++ ++++++|..+.+.+..+.... +..+..-++. +.++...++
T Consensus 274 l~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK 350 (746)
T PTZ00429 274 MGAIKVVANLASRCSQELIERCT-VRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVK 350 (746)
T ss_pred HHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHH
Confidence 99999999997642 23222211 11336777774 567888888888887766543 2333332222 223444577
Q ss_pred HHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh
Q 000714 589 VYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 668 (1335)
Q Consensus 589 ~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~ 668 (1335)
....+.|..+++-.+.. ..+..|.++..+.+.++++.+.++++.++...+.. ....+..|++++.
T Consensus 351 ~~KLeIL~~Lane~Nv~----------~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~-----a~~cV~~Ll~ll~ 415 (746)
T PTZ00429 351 LEKLRLLLKLVTPSVAP----------EILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV-----APDCANLLLQIVD 415 (746)
T ss_pred HHHHHHHHHHcCcccHH----------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHhc
Confidence 77777777654332221 24677888888889999999999999999764432 2346778888887
Q ss_pred cCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHh---cCCCHHHHHHHHHHHHHHhC
Q 000714 669 VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLA---GSPVLEVAEQATCALANLIL 730 (1335)
Q Consensus 669 ~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL---~~~~~~vk~~Aa~aL~nL~~ 730 (1335)
...+ .+.+++..+..++...+.. -.++.|+..+ .-.+++.|...+|.+...+.
T Consensus 416 ~~~~-~v~e~i~vik~IlrkyP~~--------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 416 RRPE-LLPQVVTAAKDIVRKYPEL--------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred CCch-hHHHHHHHHHHHHHHCccH--------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 6544 4567888888887655431 1345555433 22567777888999998775
No 38
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.8e-07 Score=107.95 Aligned_cols=628 Identities=14% Similarity=0.102 Sum_probs=304.4
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHH--HHHh---cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 000714 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRV--KVLL---GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGA 138 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~--~i~~---~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~ 138 (1335)
...+|.|..+|.+.+.....-|-.+|..+|.+....- .+.. .-.+|.++++.++.++..|..|+..+-.+..
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~--- 203 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFII--- 203 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheee---
Confidence 4457999999999988888889999999997654221 1111 1368999999999999999999888776655
Q ss_pred CCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHH
Q 000714 139 KDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCF 218 (1335)
Q Consensus 139 ~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~ 218 (1335)
.....-.+.-...+..|..+- ++.++.++..++.+|..|-...+.... --=.+.|+-++..-++.+.++-..||.
T Consensus 204 -~~~qal~~~iD~Fle~lFala---nD~~~eVRk~vC~alv~Llevr~dkl~-phl~~IveyML~~tqd~dE~VALEACE 278 (885)
T KOG2023|consen 204 -IQTQALYVHIDKFLEILFALA---NDEDPEVRKNVCRALVFLLEVRPDKLV-PHLDNIVEYMLQRTQDVDENVALEACE 278 (885)
T ss_pred -cCcHHHHHHHHHHHHHHHHHc---cCCCHHHHHHHHHHHHHHHHhcHHhcc-cchHHHHHHHHHHccCcchhHHHHHHH
Confidence 211111111111222333333 455677999999999888733222211 011366777888888888889888998
Q ss_pred HHHHHhhcCcchhhhHhc---cccHHHHHHHhcCCCCHHHHHHHHHHHHh-cc------cCCHHHHHHHHHCC--ChHHH
Q 000714 219 LLACMMEEDVSVCSRVLA---ADATKQLLKLLGSGNEASVRAEAAGALKS-LS------DHCKDARREIAGSN--GIPAM 286 (1335)
Q Consensus 219 ~L~~La~~~~~~~~~i~~---~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~n-Ls------~~~~e~r~~i~~~G--gi~~L 286 (1335)
....++... .+..+.. ...+|.|++-+.-+++ +.. |.+ -. .+..+.|-.+.... |..-.
T Consensus 279 Fwla~aeqp--i~~~~L~p~l~kliPvLl~~M~Ysd~-D~~------LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~ 349 (885)
T KOG2023|consen 279 FWLALAEQP--ICKEVLQPYLDKLIPVLLSGMVYSDD-DII------LLKNNEEDESVPDREEDIKPRFHKSKEHGNGED 349 (885)
T ss_pred HHHHHhcCc--CcHHHHHHHHHHHHHHHHccCccccc-cHH------HhcCccccccCCchhhhccchhhhchhccCccc
Confidence 876666442 3333322 3455555543321111 000 000 00 00000110010000 00000
Q ss_pred -------HHHhcCCCccchhhhhHHHHHHHHHH---HHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhc
Q 000714 287 -------INATIAPSKEFMQGEYAQALQENAMC---ALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1335)
Q Consensus 287 -------v~lL~~~~~e~~~~~~d~~v~~~A~~---aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~ 356 (1335)
=+=..+.+ ...+..++..++. .|.|+-+ ..+.+.+.
T Consensus 350 ~~~eDdddDe~DDdD-----~~~dWNLRkCSAAaLDVLanvf~--~elL~~l~--------------------------- 395 (885)
T KOG2023|consen 350 ADDEDDDDDEDDDDD-----AFSDWNLRKCSAAALDVLANVFG--DELLPILL--------------------------- 395 (885)
T ss_pred ccccccccccccccc-----ccccccHhhccHHHHHHHHHhhH--HHHHHHHH---------------------------
Confidence 00000000 0012222322222 2222221 11111110
Q ss_pred ccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc--cccHHHHHHHHcCCCHHHHHHHHHH
Q 000714 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN--SEAKRLLVGLITMATNEVQEELVRA 434 (1335)
Q Consensus 357 ~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~A~~a 434 (1335)
+.|...|.+ ..-.+|+.++.+++.++.-- -.-+.. ...+|.|+.+|.+..+-||.-++|.
T Consensus 396 ---------------PlLk~~L~~-~~W~vrEagvLAlGAIAEGc--M~g~~p~LpeLip~l~~~L~DKkplVRsITCWT 457 (885)
T KOG2023|consen 396 ---------------PLLKEHLSS-EEWKVREAGVLALGAIAEGC--MQGFVPHLPELIPFLLSLLDDKKPLVRSITCWT 457 (885)
T ss_pred ---------------HHHHHHcCc-chhhhhhhhHHHHHHHHHHH--hhhcccchHHHHHHHHHHhccCccceeeeeeee
Confidence 000011111 11123444444444443210 000000 2467888999999999999988888
Q ss_pred HHHhhhcc--CchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHh--cCCHHHHHHhhccC---
Q 000714 435 LLKLCNNE--GSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA--AGGIPPLVQILESG--- 507 (1335)
Q Consensus 435 L~~Ls~~~--~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~--~g~I~~Lv~LL~~~--- 507 (1335)
|...+..- +...+.+. ..+..|+..+-+++..+|++|+.+++.+-. +....++. .-.+..|+..++..
T Consensus 458 LsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE---~A~~eLVp~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 458 LSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEE---EAGEELVPYLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred HhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 87665331 11111111 233444444447899999999999998863 21122211 11233333333322
Q ss_pred ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHH---hhcCCHHHHHHHHHHHHHhhcc---C----CCCcHHH--
Q 000714 508 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL---LKNGSANGKEIAAKTLNHLIHK---S----DTATISQ-- 575 (1335)
Q Consensus 508 ~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~L---L~~~~~~~k~~Aa~aL~~L~~~---~----~~~~i~~-- 575 (1335)
+..+...|.++|.+=+.+.-.-+..| .=.+|+|++- +.+.+++.- --..+|...+.. . ...+...
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~ 609 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYI--QILMPPLIEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCF 609 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHH
Confidence 34455677777766554311111111 1135666653 333333211 001111111100 0 0000000
Q ss_pred ------HHHHhcCCCc--------chHHHHHHHHHHhhh-hcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 000714 576 ------LTALLTSDLP--------ESKVYVLDALKSMLS-VVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 640 (1335)
Q Consensus 576 ------Lv~LL~s~~~--------~~k~~a~~aL~~L~~-~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL 640 (1335)
+-.+.+...+ +-...+...+..+.. +.++ +..-+...+....+...+.+.-+++|+.|-..|
T Consensus 610 ~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~---ie~Lva~snl~~lll~C~~D~~peVRQS~FALL 686 (885)
T KOG2023|consen 610 RILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSH---IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALL 686 (885)
T ss_pred HHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhc---hHHHhhhccHHHHHHHHhccCChHHHHHHHHHH
Confidence 0011111110 101111122222211 1111 122234456667777788889999999999999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCC--CHHHH
Q 000714 641 AGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP--VLEVA 718 (1335)
Q Consensus 641 ~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~vk 718 (1335)
+.++....+.- .-.-+..++.+-.-+....-.+..+|+++++-++.--....+ ..-..++..|+..++.. ...+-
T Consensus 687 GDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~iin~~~~~~tll 763 (885)
T KOG2023|consen 687 GDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITIINRQNTPKTLL 763 (885)
T ss_pred HHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHhcccCchHHHH
Confidence 99986532211 001112233333334455566888899999988853222222 12233556666777653 34466
Q ss_pred HHHHHHHHHHhC-CchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCC
Q 000714 719 EQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 774 (1335)
Q Consensus 719 ~~Aa~aL~nL~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~ 774 (1335)
++.+-++..|.. .|+.....++.-.-+--..+-.-++++.|..|-+.+.+++.-.+
T Consensus 764 ENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp 820 (885)
T KOG2023|consen 764 ENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP 820 (885)
T ss_pred HhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence 899999999975 44444433332222222333233555578888888888887544
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=98.94 E-value=8.2e-06 Score=103.91 Aligned_cols=397 Identities=15% Similarity=0.085 Sum_probs=242.9
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchh
Q 000714 68 PVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIF 147 (1335)
Q Consensus 68 ~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l 147 (1335)
..|..=|++.++.+|..|.++|+.+.. .. +..-.++++.+.|.+.++-+|+.|+.++.++-. ... ..+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~-----~~-i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~----~~p--elv 175 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV-----SS-VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFH----DDM--QLF 175 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc-----HH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh----hCc--ccc
Confidence 444444555666666666666666521 01 111245667788889999999999999999865 211 234
Q ss_pred hhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcC
Q 000714 148 STEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED 227 (1335)
Q Consensus 148 ~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~ 227 (1335)
.+.|.++.|.++|.+. ++.+..++..+|..+....+..+. ...+.+..|+..+...++=.|.....+|... .
T Consensus 176 ~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~- 247 (746)
T PTZ00429 176 YQQDFKKDLVELLNDN---NPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQ--R- 247 (746)
T ss_pred cccchHHHHHHHhcCC---CccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--C-
Confidence 5678889999988754 445777888888888754433322 2345567788888777777777777777432 1
Q ss_pred cchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC-HHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHH
Q 000714 228 VSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC-KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQAL 306 (1335)
Q Consensus 228 ~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~-~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v 306 (1335)
+....+ ....+..+...|++.+. .+...|+.++.++.... ++....+.. ...++|+.++.+ +..+
T Consensus 248 P~~~~e--~~~il~~l~~~Lq~~N~-AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L~ss----------~~ei 313 (746)
T PTZ00429 248 PSDKES--AETLLTRVLPRMSHQNP-AVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTLSRR----------DAET 313 (746)
T ss_pred CCCcHH--HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHhhCC----------CccH
Confidence 111111 14567788888888876 89999999999988532 232222111 122556666433 2456
Q ss_pred HHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHH-HHhhCCCCchh
Q 000714 307 QENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTL-VNQFKPRLPFL 385 (1335)
Q Consensus 307 ~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~L-v~LL~~~~~~~ 385 (1335)
+..++..+.-+....+.+ +.+-+ ..+....++..
T Consensus 314 qyvaLr~I~~i~~~~P~l---------------------------------------------f~~~~~~Ff~~~~Dp~y 348 (746)
T PTZ00429 314 QYIVCKNIHALLVIFPNL---------------------------------------------LRTNLDSFYVRYSDPPF 348 (746)
T ss_pred HHHHHHHHHHHHHHCHHH---------------------------------------------HHHHHHhhhcccCCcHH
Confidence 666665554443211100 00101 11123344445
Q ss_pred HHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCC
Q 000714 386 VQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS 465 (1335)
Q Consensus 386 ~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~ 465 (1335)
++...+..|..++....... .+..|.......+.+.++.++.++..++...+... ...+..|+++++..
T Consensus 349 IK~~KLeIL~~Lane~Nv~~------IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 349 VKLEKLRLLLKLVTPSVAPE------ILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRR 417 (746)
T ss_pred HHHHHHHHHHHHcCcccHHH------HHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC
Confidence 78888888888876544333 23556667777888999999999999987654321 35688899999765
Q ss_pred CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhh---ccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHH
Q 000714 466 SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL---ESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 542 (1335)
Q Consensus 466 ~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL---~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~L 542 (1335)
.. +...++.++.++....++. . .++.|+..+ .-.+++.+...+|+|+..+..-++ .. ..+..+
T Consensus 418 ~~-~v~e~i~vik~IlrkyP~~-~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~-a~-----~~L~~~ 483 (746)
T PTZ00429 418 PE-LLPQVVTAAKDIVRKYPEL-L------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN-GK-----DIIQRF 483 (746)
T ss_pred ch-hHHHHHHHHHHHHHHCccH-H------HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh-HH-----HHHHHH
Confidence 44 4456788888886544542 1 344555433 123678899999999998764222 11 123334
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhccC
Q 000714 543 LWLLKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 543 v~LL~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
++-+...++.+|-....+..++....
T Consensus 484 i~~f~~E~~~VqlqlLta~vKlfl~~ 509 (746)
T PTZ00429 484 IDTIMEHEQRVQLAILSAAVKMFLRD 509 (746)
T ss_pred HhhhccCCHHHHHHHHHHHHHHHhcC
Confidence 44444567778777777777665543
No 40
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=6.1e-07 Score=108.85 Aligned_cols=249 Identities=15% Similarity=0.139 Sum_probs=183.0
Q ss_pred ChhHHHHHHHHHH-HHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHH
Q 000714 209 QSSTQAHVCFLLA-CMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMI 287 (1335)
Q Consensus 209 ~~~v~~~aa~~L~-~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv 287 (1335)
++..|..++.=|+ .|.+.+++....+--...+|.|+.+|+.....++...|+++|.+|+.-.+.....+++.++||.|+
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 4555555444333 334565655555555778999999999988889999999999999988888999999999999999
Q ss_pred HHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCc
Q 000714 288 NATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDP 367 (1335)
Q Consensus 288 ~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~ 367 (1335)
+-|..=. -..+-|+++.+|-.|+...
T Consensus 261 ~kL~~Ie--------yiDvAEQ~LqALE~iSR~H---------------------------------------------- 286 (1051)
T KOG0168|consen 261 EKLLTIE--------YIDVAEQSLQALEKISRRH---------------------------------------------- 286 (1051)
T ss_pred Hhhhhhh--------hhHHHHHHHHHHHHHHhhc----------------------------------------------
Confidence 8776522 1455666666666655411
Q ss_pred hhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccC-chh
Q 000714 368 LIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLW 446 (1335)
Q Consensus 368 ~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~-~~~ 446 (1335)
-+.+...|++...+.+|.--+..+|+.|+..-.|.|..-. +.-
T Consensus 287 ------------------------------------~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f 330 (1051)
T KOG0168|consen 287 ------------------------------------PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF 330 (1051)
T ss_pred ------------------------------------cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 0123334555555555544456788888888888886533 223
Q ss_pred HHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcc---CChHhHHHHHhcCCHHHHHHhhccC----ChHHHHHHHHHH
Q 000714 447 RALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN---ENDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASIL 519 (1335)
Q Consensus 447 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~---~~~~~r~~i~~~g~I~~Lv~LL~~~----~~~v~~~Aa~aL 519 (1335)
..+ .+++|.|..+|+..+.+..+.++-+++.+.. +.++.-+.+...|.|....+|+... +..+....++.|
T Consensus 331 ~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 331 HFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRML 408 (1051)
T ss_pred hHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHH
Confidence 344 4889999999999999999999988887753 4556568889999999999988755 334556678889
Q ss_pred HHHhccChhhHHHHHhcCcHHHHHHHhhcC
Q 000714 520 RNLCNHSEDIRACVESADAVPALLWLLKNG 549 (1335)
Q Consensus 520 ~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~ 549 (1335)
..++..++..+..+.+.++...|..+|...
T Consensus 409 s~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 409 SLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 999988888888999999888888888763
No 41
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.86 E-value=0.001 Score=82.63 Aligned_cols=968 Identities=16% Similarity=0.101 Sum_probs=452.5
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhH
Q 000714 110 PLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFW 189 (1335)
Q Consensus 110 ~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~ 189 (1335)
.|++-+.+.+.+.|-.|..-|.+=-.. +...-+.=.+..++..|+++|...+. ++|+.|.+++.-|++.-....
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqk---dsi~Ld~dSe~kvv~~lLklL~D~ng---EVQnlAVKClg~lvsKvke~~ 82 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQK---DSIKLDDDSERKVVKMLLKLLEDKNG---EVQNLAVKCLGPLVSKVKEDQ 82 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHh---hhhhccccchhHHHHHHHHHHhccCc---HHHHHHHHHHHHHHhhchHHH
Confidence 456666777777776665544322220 10000001223457788888887643 489999999998874332221
Q ss_pred HHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCC-----CHHHHHHHHHHHH
Q 000714 190 AATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGN-----EASVRAEAAGALK 264 (1335)
Q Consensus 190 ~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~-----~~~vr~~Aa~aL~ 264 (1335)
. .-.++.|+.-+-++....+......|......-+..........+++.+...|.+.. ...++..++.++.
T Consensus 83 l----e~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~ 158 (1233)
T KOG1824|consen 83 L----ETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILA 158 (1233)
T ss_pred H----HHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHH
Confidence 1 123445555555555555555554443332222223444555666666666665432 2246777776665
Q ss_pred hcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhH
Q 000714 265 SLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADT 344 (1335)
Q Consensus 265 nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~ 344 (1335)
-.-++-...--. .+.+.+..++.-+.++ ...++..++.+|..++...+.
T Consensus 159 d~lsr~g~ll~~-fh~~il~~l~~ql~s~---------R~aVrKkai~~l~~la~~~~~--------------------- 207 (1233)
T KOG1824|consen 159 DVLSRFGTLLPN-FHLSILKCLLPQLQSP---------RLAVRKKAITALGHLASSCNR--------------------- 207 (1233)
T ss_pred HHHHhhcccCcc-hHHHHHHHHhhcccCh---------HHHHHHHHHHHHHHHHHhcCH---------------------
Confidence 443321110000 2233344444444443 478888999999887752110
Q ss_pred hhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHH---c
Q 000714 345 LGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLI---T 421 (1335)
Q Consensus 345 ~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL---~ 421 (1335)
-+..+ ++..|.+=|.+.+....-..-+++|+.+++....+..-.-...++.+.... .
T Consensus 208 -~ly~~-------------------li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e 267 (1233)
T KOG1824|consen 208 -DLYVE-------------------LIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIE 267 (1233)
T ss_pred -HHHHH-------------------HHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccc
Confidence 00001 111111212222222223444566666655433222222245677777777 6
Q ss_pred CCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcC----------------------C------------CH
Q 000714 422 MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL----------------------S------------SE 467 (1335)
Q Consensus 422 ~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~----------------------~------------~~ 467 (1335)
..+.+.++....++..+....+...-... ...+..+++.+.. + +.
T Consensus 268 ~~dDELrE~~lQale~fl~rcp~ei~p~~-pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SW 346 (1233)
T KOG1824|consen 268 EDDDELREYCLQALESFLRRCPKEILPHV-PEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSW 346 (1233)
T ss_pred cCcHHHHHHHHHHHHHHHHhChhhhcccc-hHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhH
Confidence 67788898888888766554432211111 1122223322220 0 12
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHH-----HhcCcHHHH
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV-----ESADAVPAL 542 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i-----~~~g~i~~L 542 (1335)
.++++|+.++..+-....+.-..+.+ ..-|.++.-++.....++.....++-.+-.+.+...+.. .+.|+.+.=
T Consensus 347 kVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~ 425 (1233)
T KOG1824|consen 347 KVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSD 425 (1233)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccc
Confidence 57888888876654333443333332 234667777777666677666666555544321111111 111333322
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHH
Q 000714 543 LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 622 (1335)
Q Consensus 543 v~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv 622 (1335)
.++++...+.. +..+-+.+++..-.++..+...|..+. ...++.....+ ...+|.++
T Consensus 426 ~~~L~~~~~~i-------------------Vkai~~qlr~ks~kt~~~cf~lL~eli--~~lp~~l~~~~--~slvpgI~ 482 (1233)
T KOG1824|consen 426 LSMLSDQVPLI-------------------VKAIQKQLREKSVKTRQGCFLLLTELI--NVLPGALAQHI--PSLVPGII 482 (1233)
T ss_pred hHHHHhhhHHH-------------------HHHHHHHHhhccccchhhHHHHHHHHH--HhCcchhhhcc--cccchhhh
Confidence 22332222221 111112223232233333333333332 22222222222 23467777
Q ss_pred HhhcCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhH-HHHHh
Q 000714 623 KILSST--KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE-VAAVA 699 (1335)
Q Consensus 623 ~LL~s~--~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~-~~i~~ 699 (1335)
.-|.+. ....+..+...|.++-.+++...-.-......++++....+.-..+..+|......++.--..... ..+-.
T Consensus 483 ~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~ 562 (1233)
T KOG1824|consen 483 YSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA 562 (1233)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC
Confidence 777543 455666666666554433222111112223455555556666677777887777777643221111 00101
Q ss_pred CCCh----HHHHHHhc--CCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcC
Q 000714 700 RDAL----SPLVVLAG--SPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSR 773 (1335)
Q Consensus 700 ~g~i----~~Lv~lL~--~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~ 773 (1335)
.-.+ ....+.++ +.+.+||++|+.+...+..........--..+++.|++-+++ .-.+--|++|+..+..+.
T Consensus 563 ~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~ 640 (1233)
T KOG1824|consen 563 SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSP 640 (1233)
T ss_pred ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhcc
Confidence 1111 22223443 467789999999988876433321111111233344444332 226788888988888753
Q ss_pred CCchhHHHHHHhhccHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCCCCCCCCCcc---hhhhcccccchhhhhhhhcCC
Q 000714 774 KIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGASGHVKPAW---QVLAEFPKSITPIVSSIADAT 850 (1335)
Q Consensus 774 ~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~~---~~~~e~~~~l~~l~~~i~~~~ 850 (1335)
-.-+... +-.-.+..+...+..... .....-+.++..|..+..+ ..+++ .+++|.+. .+....
T Consensus 641 l~i~l~~---~l~~il~~l~~flrK~~r-~lr~~~l~a~~~L~~~~~~---~~~~~~~e~vL~el~~-------Lisesd 706 (1233)
T KOG1824|consen 641 LDIDLSP---VLTEILPELASFLRKNQR-ALRLATLTALDKLVKNYSD---SIPAELLEAVLVELPP-------LISESD 706 (1233)
T ss_pred ceeehhh---hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHhhh-------hhhHHH
Confidence 2211111 111223334443333221 1112223334444443322 11211 23333332 222222
Q ss_pred hhhHHHHHHHHHHhccCCCCccchhhhcccccHHHHHHHhhcCCCchhhhhhHHHHHHhhccccchhhcccccccchhHH
Q 000714 851 PLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGAALLICAAKVNHQRIVEDLNHSNSCAPL 930 (1335)
Q Consensus 851 ~~~~~~~~~iL~~l~~~~~~~~g~~i~~~g~~~~~~~~~~l~s~~~~~k~~a~~~~i~~~k~~~~~~~~~~~~~~~~a~~ 930 (1335)
--.......+|.-+...++.. .....+.+.-. ..+.+.|+-..--+..+.+...-+=+ +.+. .. ..
T Consensus 707 lhvt~~a~~~L~tl~~~~ps~---l~~~~~~iL~~-ii~ll~Spllqg~al~~~l~~f~alV-----~t~~--~~---l~ 772 (1233)
T KOG1824|consen 707 LHVTQLAVAFLTTLAIIQPSS---LLKISNPILDE-IIRLLRSPLLQGGALSALLLFFQALV-----ITKE--PD---LD 772 (1233)
T ss_pred HHHHHHHHHHHHHHHhcccHH---HHHHhhhhHHH-HHHHhhCccccchHHHHHHHHHHHHH-----hcCC--CC---cc
Confidence 224444555677666666653 23333333333 34555555433333222222222211 1111 11 11
Q ss_pred HHHHHhhhhcccCCccccCCCchhhhHHhhcCCchhhccCCccccCcchhchhhHHHHHHHHHhcCCC-ccchhHhhcch
Q 000714 931 IQSLVTMLSVVEASPLRNQGNDDKEAISIYRYTSEEARNGGESESSTAVIFGENLAIWLLCVLACHDE-KCKIVIMEAGA 1009 (1335)
Q Consensus 931 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~ 1009 (1335)
...|++++.. |=+|+..|..++-.- --+| .+.++|.+..+ +++.+.
T Consensus 773 y~~l~s~lt~----------------------PV~~~~~~~l~kqa~-----~siA-~cvA~Lt~~~~~~s~s~a----- 819 (1233)
T KOG1824|consen 773 YISLLSLLTA----------------------PVYEQVTDGLHKQAY-----YSIA-KCVAALTCACPQKSKSLA----- 819 (1233)
T ss_pred HHHHHHHHcC----------------------CcccccccchhHHHH-----HHHH-HHHHHHHHhccccchhHH-----
Confidence 3444444432 112222222222110 0011 23333433333 344332
Q ss_pred hHHhHHHhhccccccccccccccchhHHHHHHHHHHhcchhhhhhhhhhchHHHHH-HHhcccchhhhHHHHHHHHHhhh
Q 000714 1010 MDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAHATMKAIPILA-NLLKSEESANRYFAAQAVASLVC 1088 (1335)
Q Consensus 1010 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~aa~~~~~l~~ 1088 (1335)
.+|.-..++ .-+++.-+-|+.|-||=+=+ +.......-+++.+ --+.++.-.=+--|+.||++++.
T Consensus 820 -----~kl~~~~~s----~~s~~~ikvfa~LslGElgr----~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 820 -----TKLIQDLQS----PKSSDSIKVFALLSLGELGR----RKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred -----HHHHHHHhC----CCCchhHHHHHHhhhhhhcc----CCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 222211122 12334445566666665433 23333344455554 57888888888899999888875
Q ss_pred -cCCCCcchhhcccCcccchhhhhcccccchhhhhhhhHHhhhccCCcHHHHHhhhccccccchhhhhhhhhhHHhhcCC
Q 000714 1089 -NGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRYPDQVALERLFRVEDIRVGATSRKAIPALVDLLKP 1167 (1335)
Q Consensus 1089 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~~~~~~~~~~l~~~~~~ 1167 (1335)
|- -+=+|-+++...+
T Consensus 887 gnl----------------------------------------------------------------~~yLpfil~qi~s 902 (1233)
T KOG1824|consen 887 GNL----------------------------------------------------------------PKYLPFILEQIES 902 (1233)
T ss_pred Cch----------------------------------------------------------------HhHHHHHHHHHhc
Confidence 22 1123333333322
Q ss_pred CCCCCCchhHHHHHHH-HhhhcCCCcceeeeecChHHHHHHHhhCC---CCcchHHHHHHHHHHhhcChhhhhchhhHhh
Q 000714 1168 IPDRPGAPFLALGFLI-QLAKDCPSNKIVMVEAGALEALTKYLSLG---PQDATEEAATDLLGILFSSAEIRRHESAFAA 1243 (1335)
Q Consensus 1168 ~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~e~~~~~~l~~~ls~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1243 (1335)
-|-|.- .-++.|- =|...... .=--..|-+-.+|+-. ..+-+++-.||++|-|..+. -..-
T Consensus 903 qpk~Qy---LLLhSlkevi~~~svd-----~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e-------pesL 967 (1233)
T KOG1824|consen 903 QPKRQY---LLLHSLKEVIVSASVD-----GLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE-------PESL 967 (1233)
T ss_pred chHhHH---HHHHHHHHHHHHhccc-----hhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC-------hHHH
Confidence 111111 1111110 00000000 0000111111112211 23345667777777664431 1234
Q ss_pred HHHHHHHHHhCCcchHhHHHHHHHhhcchhhhhhHHHHhhhhHHHHHhhcCchhHHHHHHHHHHHHhhcCCCCcc
Q 000714 1244 VSQLVAVLRLGGRGARYSAAKALESLFSADHIRNAESARQAVQPLVEILNTGLEREQHAAIAALVRLLSENPSRA 1318 (1335)
Q Consensus 1244 ~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 1318 (1335)
+-.|.-.+|++++..|-+++.|++-...++---=-..-.|-|--.+.++.-++-...++|+.++..-..-.|++.
T Consensus 968 lpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslI 1042 (1233)
T KOG1824|consen 968 LPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLI 1042 (1233)
T ss_pred HHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHH
Confidence 667888999999999999999999888555433333336677778889999999999999999998888888763
No 42
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5.5e-05 Score=91.79 Aligned_cols=636 Identities=13% Similarity=0.078 Sum_probs=322.2
Q ss_pred cCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc--CCHHHHHHHHHHHHH-hh-cCchhHHHHHhc--
Q 000714 32 SSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS--GSLAVKIQAATVLGS-LC-KENELRVKVLLG-- 105 (1335)
Q Consensus 32 ~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s--~~~~vk~~aa~~L~~-L~-~~~~~~~~i~~~-- 105 (1335)
.+.|.-.+..|-..|.+++.++ + ++++..|...|.+ .++..|..|.-.|.| |+ ++++.+....+.
T Consensus 11 lSpD~n~~~~Ae~~l~~~~~~n------f---~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl 81 (859)
T KOG1241|consen 11 LSPDQNVRKRAEKQLEQAQSQN------F---PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWL 81 (859)
T ss_pred cCCCcchHHHHHHHHHHHHhcc------H---HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHH
Confidence 4456667888888998888743 1 3444555555543 445678888888888 44 444444433321
Q ss_pred C-------Cc-HHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCC-Chh-hHHHHHH
Q 000714 106 G-------CI-PPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLK-SGN-VVDNLLT 175 (1335)
Q Consensus 106 g-------~I-~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~-~~~-~v~~~a~ 175 (1335)
+ -| ..+++.|.+..+.....|+.++..++...++. +.-|-|+..|.+... ..+ .+.+..+
T Consensus 82 ~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~----------n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 82 QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQ----------NQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCch----------hhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1 11 23445566555566667777777777633222 233445544443321 111 3667788
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc--CChhHHHHHHHHHHHHhhcCc-chhhhHhccccHHHHHHHhcCCCC
Q 000714 176 GALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQAHVCFLLACMMEEDV-SVCSRVLAADATKQLLKLLGSGNE 252 (1335)
Q Consensus 176 ~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s--~~~~v~~~aa~~L~~La~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~ 252 (1335)
.++..+|.+-+.....-.....+..++.-.+. ++..+|..+..+|.+-..-.. ....+.-..=.+....+.-++ +|
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~-~d 230 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQS-PD 230 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccC-Cc
Confidence 99999996543321111123445555555544 456788888888875431100 011111111122223333333 45
Q ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccc
Q 000714 253 ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSL 332 (1335)
Q Consensus 253 ~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~ 332 (1335)
.+++..|..+|..+.+-.-+.-+.-........-+..+++. ++.+.-+++..=.++|.-.-.+....++..
T Consensus 231 ~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~---------~deValQaiEFWsticeEEiD~~~e~~e~~ 301 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSD---------NDEVALQAIEFWSTICEEEIDLAIEYGEAV 301 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999988854433222222222233333334432 355665666555555531000000011111
Q ss_pred cCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhccccc
Q 000714 333 ESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA 412 (1335)
Q Consensus 333 ~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~ 412 (1335)
+.+..+.....+.|++ .+.
T Consensus 302 d~~~~p~~~~fa~~a~-------------------------------------------------------------~~v 320 (859)
T KOG1241|consen 302 DQGLPPSSKYFARQAL-------------------------------------------------------------QDV 320 (859)
T ss_pred hcCCCchhhHHHHHHH-------------------------------------------------------------hHh
Confidence 1111000000111111 234
Q ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCCh
Q 000714 413 KRLLVGLITM-------ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND 485 (1335)
Q Consensus 413 i~~Lv~lL~~-------~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~ 485 (1335)
+|.|+++|.. .++..-+.|..||.-++...++ .|+ ...+|.+-+-+++++..-++.|+.++..+-.+.+
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~ 396 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPE 396 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCc
Confidence 4555555533 2335667777777766554332 133 2455666667788999999999999998875444
Q ss_pred HhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHH-HHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 000714 486 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC-VESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1335)
Q Consensus 486 ~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~-i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L 564 (1335)
..+..=.-.+++|.++.++.+++.-++..++|+|+.++.+.++.+.- ..-...++.++.-+.+ .|++-.+++|++.+|
T Consensus 397 ~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 397 PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISL 475 (859)
T ss_pred hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHH
Confidence 44444445689999999999888899999999999999875543321 2223344555444433 577778888998888
Q ss_pred hccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhc--C-CCHHHHHHHHHHHH
Q 000714 565 IHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS--S-TKEETQAKSASALA 641 (1335)
Q Consensus 565 ~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~--s-~~~~v~~~Aa~aL~ 641 (1335)
+.......... ....+.+ -+. ...+..|++.-. + ....+|..|=.+|.
T Consensus 476 aea~~eA~~s~-----~qt~~~t-~~y-----------------------~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 476 AEAAYEAAVSN-----GQTDPAT-PFY-----------------------EAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred HHHHHHhccCC-----CCCCccc-hhH-----------------------HHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 64210000000 0000000 000 011222222221 1 23456777777777
Q ss_pred HHhcCChhhHHHHHhcCCh----HHHHHhhh----cCCh-----hHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHH
Q 000714 642 GIFETRKDLRESSIAVKTL----WSVMKLLD----VGSE-----CILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 708 (1335)
Q Consensus 642 nL~~~~~~~~~~l~~~g~v----~~Lv~LL~----~~~~-----~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~ 708 (1335)
.|..+.++.+-.++ .+.. .+|-+.++ +..+ +.+..-+.+|..+.+-..... .-.....+..|++
T Consensus 527 ElIk~st~~vy~~v-~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~--~~~~d~iM~lflr 603 (859)
T KOG1241|consen 527 ELIKNSTDDVYPMV-QKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDI--REVSDQIMGLFLR 603 (859)
T ss_pred HHHHcCcHHHHHHH-HHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccc--hhHHHHHHHHHHH
Confidence 77776555433221 1111 11111221 1111 122223333433332211111 1233446677788
Q ss_pred HhcC-CCHHHHHHHHHHHHHHhCC--chHHHHHHHCCChHHHHHHhhcCChh-hHHHHHHHHHHHhhcCCCchhHHHHHH
Q 000714 709 LAGS-PVLEVAEQATCALANLILD--SEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVN 784 (1335)
Q Consensus 709 lL~~-~~~~vk~~Aa~aL~nL~~~--~~~~~~~~~~g~v~~L~~ll~~~~~~-~k~~A~~aL~~Ll~~~~~~~~~~~~i~ 784 (1335)
++.+ .+.-+.+.|-.++..|+.+ +.....+ ....|-|..-+++.+.. +-.-|+.-..++.+... +... .-
T Consensus 604 i~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~--~~i~--py 677 (859)
T KOG1241|consen 604 IFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALE--DDIL--PY 677 (859)
T ss_pred HHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH--hhhh--hH
Confidence 8887 4444667777666666531 2221111 23445566666555554 44444444445554321 2221 24
Q ss_pred hhccHHHHHHhhhcCC
Q 000714 785 RAGTVLALVSFLESAS 800 (1335)
Q Consensus 785 ~~g~l~~Lv~~~~~~~ 800 (1335)
+-.-+..|+.++.++.
T Consensus 678 ~d~~mt~Lvq~Lss~~ 693 (859)
T KOG1241|consen 678 CDELMTVLVQCLSSPN 693 (859)
T ss_pred HHHHHHHHHHHccCcc
Confidence 5566777888888877
No 43
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.3e-05 Score=95.40 Aligned_cols=560 Identities=15% Similarity=0.110 Sum_probs=299.7
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhc--------CChHHHHHHhhcCCCChhhHHHHHHHHH
Q 000714 107 CIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE--------GVVPVLWEQLKNGLKSGNVVDNLLTGAL 178 (1335)
Q Consensus 107 ~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~--------G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL 178 (1335)
.+|.|.++|.+++..+++-|..||..++. |.. .+.+. -.+|.+++..+.++ +.++..+.+++
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcE----Dsa---~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~cv 198 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICE----DSA---QFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVGCV 198 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHh----hhH---HHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHhhh
Confidence 56889999999988889999999999998 432 12222 24788888888763 45777766666
Q ss_pred HHhhcCC-hhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHH
Q 000714 179 RNLSTST-EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRA 257 (1335)
Q Consensus 179 ~nLs~~~-~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~ 257 (1335)
-...-.. ......| ...++.+..+-.+.++++|.+.|..+..|..-.++...- -=.++++-+++.-++.++ ++-.
T Consensus 199 Nq~i~~~~qal~~~i--D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~dE-~VAL 274 (885)
T KOG2023|consen 199 NQFIIIQTQALYVHI--DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDVDE-NVAL 274 (885)
T ss_pred hheeecCcHHHHHHH--HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCcch-hHHH
Confidence 5433222 1111111 356777888888899999999999998776443321110 115677778887777766 8999
Q ss_pred HHHHHHHhcccCCHHHHHHHHH--CCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCC
Q 000714 258 EAAGALKSLSDHCKDARREIAG--SNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESC 335 (1335)
Q Consensus 258 ~Aa~aL~nLs~~~~e~r~~i~~--~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~ 335 (1335)
+|++....++. .+..+..+.. ...+|.|+.-+.+... |..+ |.| . .++.
T Consensus 275 EACEFwla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~-------D~~L-------L~~--~------------eeD~ 325 (885)
T KOG2023|consen 275 EACEFWLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDD-------DIIL-------LKN--N------------EEDE 325 (885)
T ss_pred HHHHHHHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccc-------cHHH-------hcC--c------------cccc
Confidence 99999999996 4455554433 2345665555544321 1000 000 0 0000
Q ss_pred CChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHH
Q 000714 336 SSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRL 415 (1335)
Q Consensus 336 ~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~ 415 (1335)
. ... .++.+-+.+.+--..+... .+ ...++--....+.++
T Consensus 326 ~------------------vpD--------reeDIkPRfhksk~~~~~~----~~-------~~eDdddDe~DDdD~--- 365 (885)
T KOG2023|consen 326 S------------------VPD--------REEDIKPRFHKSKEHGNGE----DA-------DDEDDDDDEDDDDDA--- 365 (885)
T ss_pred c------------------CCc--------hhhhccchhhhchhccCcc----cc-------ccccccccccccccc---
Confidence 0 000 0000111111100000000 00 000000000000000
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhc-
Q 000714 416 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA- 494 (1335)
Q Consensus 416 Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~- 494 (1335)
.+++..|+..+.+|-.|+..-++ .+. .-..|.|-+.|.++.-.+++.++-+|+.++.+.- .-++..
T Consensus 366 ------~~dWNLRkCSAAaLDVLanvf~~---elL-~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~L 432 (885)
T KOG2023|consen 366 ------FSDWNLRKCSAAALDVLANVFGD---ELL-PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHL 432 (885)
T ss_pred ------cccccHhhccHHHHHHHHHhhHH---HHH-HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccch
Confidence 12356777777777777654322 222 2345666677778888999999999999985322 222221
Q ss_pred -CCHHHHHHhhccCChHHHHHHHHHHHHHhcc--ChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCC
Q 000714 495 -GGIPPLVQILESGSAKAKEDSASILRNLCNH--SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA 571 (1335)
Q Consensus 495 -g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~--~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~ 571 (1335)
..||-|+.+|.+..+-+|...+|+|+..+.. +++..+.+. ..+..|++.+-+++..+++.|+.+...+-....+.
T Consensus 433 peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e 510 (885)
T KOG2023|consen 433 PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE 510 (885)
T ss_pred HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch
Confidence 2588899999999999999999999988754 122112221 13444555556688999999999999998877766
Q ss_pred cHHHHHHHhc-------CC---CcchHHHHHHHHHHhhh-hcCchHHHHHhhhhcchHHHHHH---hhcCCCHHHHHHHH
Q 000714 572 TISQLTALLT-------SD---LPESKVYVLDALKSMLS-VVSFSDILREGSAANDAVETMIK---ILSSTKEETQAKSA 637 (1335)
Q Consensus 572 ~i~~Lv~LL~-------s~---~~~~k~~a~~aL~~L~~-~~~~~~~~~~~i~~~~~i~~Lv~---LL~s~~~~v~~~Aa 637 (1335)
-++.|-.+|. .. +--+...|+..|+.-.- --+....++ -.+|+|++ ++++++.++ -.-.
T Consensus 511 LVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiq------iLmPPLi~KW~~lsd~DKdL-fPLL 583 (885)
T KOG2023|consen 511 LVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQ------ILMPPLIEKWELLSDSDKDL-FPLL 583 (885)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHH------HhccHHHHHHHhcCcccchH-HHHH
Confidence 6655444332 22 22233344444443110 001222222 23677775 344444432 2222
Q ss_pred HHHHHHhc----CChhhHHHH-Hh-cCChHHHHHhhhc---------CChhHHHHHHHHHHHHHccChhhhHHHHHhCCC
Q 000714 638 SALAGIFE----TRKDLRESS-IA-VKTLWSVMKLLDV---------GSECILVEASRCLAAIFLSVRENREVAAVARDA 702 (1335)
Q Consensus 638 ~aL~nL~~----~~~~~~~~l-~~-~g~v~~Lv~LL~~---------~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~ 702 (1335)
.+|..++. +.-.....+ .+ ...+...++++.. .+.+-..-+..-+..++.+-..+-..-+..++.
T Consensus 584 EClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl 663 (885)
T KOG2023|consen 584 ECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNL 663 (885)
T ss_pred HHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccH
Confidence 33333321 111111110 00 0112222222211 111112223333334443322222213666777
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhCCchH-HHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhc
Q 000714 703 LSPLVVLAGSPVLEVAEQATCALANLILDSEV-SEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHS 772 (1335)
Q Consensus 703 i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~-~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~ 772 (1335)
...+.+.+.+..++||..+-..|+.|+..... ..-. -+..++.+..-+......+--||+||+..+.-.
T Consensus 664 ~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~-~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k 733 (885)
T KOG2023|consen 664 LDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPN-LADFLPILGANLNPENISVCNNAIWAIGEIALK 733 (885)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccch-HHHHHHHHhhcCChhhchHHHHHHHHHHHHHHH
Confidence 88888999999999999998888888754321 1111 122223333222223333789999999988753
No 44
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.74 E-value=2.9e-05 Score=93.05 Aligned_cols=561 Identities=12% Similarity=0.075 Sum_probs=294.9
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHh
Q 000714 115 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 194 (1335)
Q Consensus 115 L~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~ 194 (1335)
|.+.+..+|..++.+|..++.. ...-.+-.-..++.+||+=.+.+.... . ...+.|...|+...+....-...
T Consensus 562 l~De~qkVR~itAlalsalaea----a~Pygie~fDsVlkpLwkgir~hrgk~--l-aafLkAigyliplmd~eya~yyT 634 (1172)
T KOG0213|consen 562 LKDEQQKVRTITALALSALAEA----ATPYGIEQFDSVLKPLWKGIRQHRGKE--L-AAFLKAIGYLIPLMDAEYASYYT 634 (1172)
T ss_pred hcccchhhhhHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHHccChH--H-HHHHHHHhhccccccHHHHHHhH
Confidence 4456677787777777777662 111122222345678888777764332 2 23466777887666555444444
Q ss_pred cCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC-------HHHHHHHHHHHHhcc
Q 000714 195 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-------ASVRAEAAGALKSLS 267 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-------~~vr~~Aa~aL~nLs 267 (1335)
....-.+.+=..+++.+.+....+.+...+..+. .-........+|.++..+-.... ..+...+..+-.
T Consensus 635 revmlil~rEf~sPDeemkkivLKVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~--- 710 (1172)
T KOG0213|consen 635 REVMLILIREFGSPDEEMKKIVLKVVKQCCATDG-VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA--- 710 (1172)
T ss_pred HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC-CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH---
Confidence 4556667777788899999888888877764433 44556666777776665432111 011111111111
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhh
Q 000714 268 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGA 347 (1335)
Q Consensus 268 ~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Ga 347 (1335)
+-|.-+.+-+.+..-. +.....+...+.+..++-+. ++..--+.+... --
T Consensus 711 -----------KvG~~~~v~R~v~~lk------de~e~yrkm~~etv~ri~~~-------lg~~diderleE------~l 760 (1172)
T KOG0213|consen 711 -----------KVGSDPIVSRVVLDLK------DEPEQYRKMVAETVSRIVGR-------LGAADIDERLEE------RL 760 (1172)
T ss_pred -----------HhCchHHHHHHhhhhc------cccHHHHHHHHHHHHHHHhc-------cccccccHHHHH------HH
Confidence 1233333322222111 01233444444444443321 000000000000 00
Q ss_pred hHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHH
Q 000714 348 LASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV 427 (1335)
Q Consensus 348 l~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 427 (1335)
+..++..|+ +..++..+--....+..+-. ..+..-.-...+..++..|++.++.+
T Consensus 761 idgil~Afq----------------------eqtt~d~vml~gfg~V~~~l---g~r~kpylpqi~stiL~rLnnksa~v 815 (1172)
T KOG0213|consen 761 IDGILYAFQ----------------------EQTTEDSVMLLGFGTVVNAL---GGRVKPYLPQICSTILWRLNNKSAKV 815 (1172)
T ss_pred HHHHHHHHH----------------------hcccchhhhhhhHHHHHHHH---hhccccchHHHHHHHHHHhcCCChhH
Confidence 011111122 11111100000000000000 00000001234556778889999999
Q ss_pred HHHHHHHHHHhhhccCch--hHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc
Q 000714 428 QEELVRALLKLCNNEGSL--WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE 505 (1335)
Q Consensus 428 ~~~A~~aL~~Ls~~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~ 505 (1335)
+++|+..+..++..-... .+.+...|. .|.+.|....+++.-..+++++.+.+...-.+..=--.+.+|.|.-+|+
T Consensus 816 Rqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 816 RQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 999998888775432221 112222232 3667888888888877777777765321111111112468999999999
Q ss_pred cCChHHHHHHHHHHHHHhccChhh---HHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC-CcHHHHHHHhc
Q 000714 506 SGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-ATISQLTALLT 581 (1335)
Q Consensus 506 ~~~~~v~~~Aa~aL~nL~~~~~~~---r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-~~i~~Lv~LL~ 581 (1335)
+.+.+++++++..++.++...+++ |+.+. .---|+++|+.+....|+.|..++..++..-.+ .++..|+.=|.
T Consensus 894 nrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLk 970 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLK 970 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcch
Confidence 999999999999999999876653 33332 234678999999999999999999998765432 22222332222
Q ss_pred CCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChH
Q 000714 582 SDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLW 661 (1335)
Q Consensus 582 s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~ 661 (1335)
..+-+..++..++. + .+.+.-.....+|.|+.=-+.++..+|.-...+++.++....+.-...+ --+.|
T Consensus 971 --vqeRq~RvcTtvaI-a-------IVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-yav~P 1039 (1172)
T KOG0213|consen 971 --VQERQNRVCTTVAI-A-------IVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-YAVTP 1039 (1172)
T ss_pred --HHHHHhchhhhhhh-h-------hhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhH
Confidence 22333333333331 1 1112122234577777777778889999999999999865333211111 12456
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhc-------CCCHHHHHHHHHHHHHHh--CCc
Q 000714 662 SVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAG-------SPVLEVAEQATCALANLI--LDS 732 (1335)
Q Consensus 662 ~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~-------~~~~~vk~~Aa~aL~nL~--~~~ 732 (1335)
-|-..|.+.+..-..-++.++..++.+.+. -|....++.+|+ +.++.+...-..++-.|. ..+
T Consensus 1040 lleDAlmDrD~vhRqta~~~I~Hl~Lg~~g--------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~ 1111 (1172)
T KOG0213|consen 1040 LLEDALMDRDLVHRQTAMNVIKHLALGVPG--------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGP 1111 (1172)
T ss_pred HHHHhhccccHHHHHHHHHHHHHHhcCCCC--------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhch
Confidence 666677777776666677777777765332 233344444443 455665543333333332 234
Q ss_pred hHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcCC
Q 000714 733 EVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSRK 774 (1335)
Q Consensus 733 ~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~~ 774 (1335)
....+++ .+-+..... .-++.-|...|.+..+.
T Consensus 1112 ~~~~~Y~--------~QGLFHPar-kVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1112 QAMLKYC--------LQGLFHPAR-KVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred HHHHHHH--------HHhccCcHH-HHHHHHHHHHHhHhhcc
Confidence 4444552 222222222 34567788888776543
No 45
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=0.0016 Score=80.99 Aligned_cols=508 Identities=14% Similarity=0.119 Sum_probs=290.5
Q ss_pred HHHHHhcCCHHHHHHHhccC-----------Chh--HHHHHHHHHHHHhhcCcchhhhHhc-cccHHHHHHHhcCCCCHH
Q 000714 189 WAATVQAGGIDILVKLLTLG-----------QSS--TQAHVCFLLACMMEEDVSVCSRVLA-ADATKQLLKLLGSGNEAS 254 (1335)
Q Consensus 189 ~~~i~~~g~I~~Lv~lL~s~-----------~~~--v~~~aa~~L~~La~~~~~~~~~i~~-~g~i~~Lv~lL~s~~~~~ 254 (1335)
-.+++..||++.|..+++.. ++. +-.+.+.+++ .+...+..+..+.+ ...|+-|++.+.-++-+.
T Consensus 1420 aEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~S-VaaQFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr 1498 (2235)
T KOG1789|consen 1420 AEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFS-VAAQFEACRQRLMEMPSIIGDLTRLLQFSNLPR 1498 (2235)
T ss_pred HHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHhccccH
Confidence 35688899999999998652 222 3344555554 23445555665554 567888888887766557
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCc---cc-hhhh-------hHHHHHHHHHHHHHHhhcCCch
Q 000714 255 VRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK---EF-MQGE-------YAQALQENAMCALANISGGLSN 323 (1335)
Q Consensus 255 vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~---e~-~~~~-------~d~~v~~~A~~aL~nLs~g~~~ 323 (1335)
+...++.++...+- +...+..+.++|++=.|+.+|..-+. |. .+++ .....-..++.+|.++.+-
T Consensus 1499 ~~~aa~qci~~~aV-d~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~--- 1574 (2235)
T KOG1789|consen 1499 LSTAAAQCIRAMAV-DTLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGF--- 1574 (2235)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcc---
Confidence 77888899999995 78899999999998888777654321 11 1222 2233445667788887751
Q ss_pred hhhhhcccccCCCChhHHHhHhhhh--HHHHH------------hhcccccCCCCCCchhhHHHHHHhhC----------
Q 000714 324 VISSLGQSLESCSSPAQVADTLGAL--ASALM------------IYDSKAESTKPSDPLIVEQTLVNQFK---------- 379 (1335)
Q Consensus 324 ~i~~L~~l~~~~~~~~~i~~~~Gal--~~ll~------------~l~~~~~s~~~~~~~~i~~~Lv~LL~---------- 379 (1335)
.++-...|.+. .+.+.+.++ +|+.. .+....++.+++=-.+-..-|..+++
T Consensus 1575 ----~AdE~~TP~N~-T~~~sL~alLTPyiAr~Lk~e~~~~iLk~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G 1649 (2235)
T KOG1789|consen 1575 ----RADEENTPDND-TVQASLRALLTPYIARCLKLETNDMVLKTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNG 1649 (2235)
T ss_pred ----ccccccCCCCh-hHHHHHHHhccHHHHHHHHHHHHHHHHHHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCC
Confidence 00000011111 111111111 11111 11122222222100001111111111
Q ss_pred ------------------------------CCCchhH---HHHHHHHHHHHhC-----CcchhhhhcccccHHHHHHH--
Q 000714 380 ------------------------------PRLPFLV---QERTIEALASLYG-----NPLLSIKLENSEAKRLLVGL-- 419 (1335)
Q Consensus 380 ------------------------------~~~~~~~---q~~aa~aL~~L~~-----~~~~~~~i~~~g~i~~Lv~l-- 419 (1335)
..+++.+ +..++.-|-.+.+ .+..+..-.....+..-...
T Consensus 1650 ~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~s 1729 (2235)
T KOG1789|consen 1650 PTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGS 1729 (2235)
T ss_pred CchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccch
Confidence 1111111 0111111111110 00000000000000000000
Q ss_pred HcC----CCHHHHHHHHHHHHHhhhccCchhHH----HhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 420 ITM----ATNEVQEELVRALLKLCNNEGSLWRA----LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 420 L~~----~~~~v~~~A~~aL~~Ls~~~~~~~~~----i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
=.+ ++....+.+..+|.|+...+++.... +.--|-.+.+...+.. .+++++.-|+.++..++. +.++...
T Consensus 1730 E~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~ 1808 (2235)
T KOG1789|consen 1730 EAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTD 1808 (2235)
T ss_pred hhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHH
Confidence 000 11234567889999998777643221 1112556777777764 577899999999998884 6888899
Q ss_pred HHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCC
Q 000714 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~-~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
+++.|.+..|+++|.+ -|..|+.+..+|+.|+. +++....-.+.|++..+..++-. .++.+|..++..|.+|..+.-
T Consensus 1809 ~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl 1886 (2235)
T KOG1789|consen 1809 LATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKL 1886 (2235)
T ss_pred HHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccc
Confidence 9999999999998866 57889999999999998 47888777888888888877665 456778888888888876550
Q ss_pred ---------------------------------------------------------------------C----------
Q 000714 570 ---------------------------------------------------------------------T---------- 570 (1335)
Q Consensus 570 ---------------------------------------------------------------------~---------- 570 (1335)
+
T Consensus 1887 ~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqs 1966 (2235)
T KOG1789|consen 1887 TGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQS 1966 (2235)
T ss_pred cCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhh
Confidence 0
Q ss_pred ------------------------------------CcHHHHHHHhcCCCcchH--HHHHHHHHHhhhhcCchHHHHHhh
Q 000714 571 ------------------------------------ATISQLTALLTSDLPESK--VYVLDALKSMLSVVSFSDILREGS 612 (1335)
Q Consensus 571 ------------------------------------~~i~~Lv~LL~s~~~~~k--~~a~~aL~~L~~~~~~~~~~~~~i 612 (1335)
+-++++..++...+++.- .....++-.+ +..+. -+...+
T Consensus 1967 Ag~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L--~r~hP-~LADqi 2043 (2235)
T KOG1789|consen 1967 AGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVEL--VRHHP-NLADQL 2043 (2235)
T ss_pred cchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHH--HHhCc-chhhhC
Confidence 001112333333333311 1111111111 11122 123335
Q ss_pred hhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhh
Q 000714 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1335)
Q Consensus 613 ~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~ 692 (1335)
..-|-+|.++.-+...+..+-..|.++|..|+.+ .-.++.+.....+.+++..+...-.- .--|+.++-.++.-....
T Consensus 2044 p~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~~~~-~GLA~EalkR~~~r~~~e 2121 (2235)
T KOG1789|consen 2044 PSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQPSL-MGLAAEALKRLMKRNTGE 2121 (2235)
T ss_pred CCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhcchH-HHHHHHHHHHHHHHhHHH
Confidence 5567899999888777666778999999999988 66777788888888888888664432 336777777777533332
Q ss_pred hHHHHHhCCChHHHHHHhcCCC
Q 000714 693 REVAAVARDALSPLVVLAGSPV 714 (1335)
Q Consensus 693 ~~~~i~~~g~i~~Lv~lL~~~~ 714 (1335)
--....+.|.+|.|.++|....
T Consensus 2122 LVAQ~LK~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2122 LVAQMLKCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHhccCcHHHHHHHhcccc
Confidence 2234788999999999998643
No 46
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.5e-06 Score=102.46 Aligned_cols=403 Identities=15% Similarity=0.103 Sum_probs=260.6
Q ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh-hhccCchhHHHhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhccCChHhHH
Q 000714 413 KRLLVGLITMA-TNEVQEELVRALLKL-CNNEGSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 413 i~~Lv~lL~~~-~~~v~~~A~~aL~~L-s~~~~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
++.|+.-|+.. ++..|..++.-|+.+ +..+++.-.-+--.-.+|.|+.+|+.. +.++.-.|+++|.+|+.--|....
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34455555444 777887777777654 444443322222235689999999864 789999999999999987888899
Q ss_pred HHHhcCCHHHHHHhhcc-CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 000714 490 AITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~-~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
.+++.++||.|+.-|.. ...++-|+++.+|..|++. .-..+.++|++...+..+.--+...++.|..+..|.+..-
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999985554 4789999999999999874 3356678999999999998888889999999999998764
Q ss_pred CC-------CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC----CHHHHHHHH
Q 000714 569 DT-------ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSA 637 (1335)
Q Consensus 569 ~~-------~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~----~~~v~~~Aa 637 (1335)
.+ ..++.|..+|.-.+....++++-|+..+..-+.+....-..+...+.+.....|+.-. +..+.....
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vI 405 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVI 405 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHH
Confidence 32 5677788889888888999999999988776555443333456677888888888654 345667778
Q ss_pred HHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCC--------------hhHHHHHHHHHHHHHccChhhh---------H
Q 000714 638 SALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS--------------ECILVEASRCLAAIFLSVRENR---------E 694 (1335)
Q Consensus 638 ~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~--------------~~v~~~aa~aL~~L~~~~~~~~---------~ 694 (1335)
+.|..+|.+.+.....+.+.++...|..+|.+.+ +..+.+...-+.-++-..+... +
T Consensus 406 rmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~ 485 (1051)
T KOG0168|consen 406 RMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIY 485 (1051)
T ss_pred HHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhc
Confidence 8889999988888888888898888888885432 2222222111111111111000 0
Q ss_pred -HHHHhCCChH-----------------HHHHHhcCCCHHHH----HHHHHHHHHHhCCc-hHHHHHHHCCChHHHHHHh
Q 000714 695 -VAAVARDALS-----------------PLVVLAGSPVLEVA----EQATCALANLILDS-EVSEKAIAEEIILPATRVL 751 (1335)
Q Consensus 695 -~~i~~~g~i~-----------------~Lv~lL~~~~~~vk----~~Aa~aL~nL~~~~-~~~~~~~~~g~v~~L~~ll 751 (1335)
..-...+.++ .++.-+++..-..+ +-...+=..+..+. +....+ ....++.|+++.
T Consensus 486 ~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F-~~~llpVLveVY 564 (1051)
T KOG0168|consen 486 EIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSF-GKDLLPVLVEVY 564 (1051)
T ss_pred ccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHH-HHHHHHHHHHHH
Confidence 0000000000 11111111000000 00001111223333 333333 456889999998
Q ss_pred hcCChh-hHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCCC
Q 000714 752 CEGTIS-GKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGGA 821 (1335)
Q Consensus 752 ~~~~~~-~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~~ 821 (1335)
.+.-.- ++.++-.||.++.--.+ .+-..+.+..-..-..+-+++...+..+. -.|+....+|++.-++
T Consensus 565 sSsA~~~VR~kcL~Ailrlvy~s~-seli~slLk~~~vSS~lAG~lsskD~~vl-VgALQvAEiLmeKlpd 633 (1051)
T KOG0168|consen 565 SSSANPDVRYKCLSAILRLVYFSN-SELIGSLLKNTNVSSHLAGMLSSKDLTVL-VGALQVAEILMEKLPD 633 (1051)
T ss_pred hccCCchhhHHHHHHHHHHHhhCC-HHHHHHHHhcchHHHHHHhhhhcCCCeeE-eehHHHHHHHHHHhHH
Confidence 777666 89999999999986432 22223444444444455556666664444 5677777788886555
No 47
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=0.0003 Score=87.12 Aligned_cols=701 Identities=15% Similarity=0.142 Sum_probs=348.4
Q ss_pred HHHHHHHccCCCchhHHHHHHHHHH-HhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcC-chhHHH
Q 000714 24 QCIEQLRQSSSSVQEKEYSLRQLLE-LIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE-NELRVK 101 (1335)
Q Consensus 24 ~~i~~l~~~~~s~~ek~~Al~~L~~-Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~-~~~~~~ 101 (1335)
++++...+ +|.+=|--|++.|.. |-++. ..--..+....+..++++|.+.+.+|+..|.+.|+-+++. ++.+.+
T Consensus 9 ~Llekmts--sDKDfRfMAtsDLm~eLqkds--i~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le 84 (1233)
T KOG1824|consen 9 NLLEKMTS--SDKDFRFMATSDLMTELQKDS--IKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE 84 (1233)
T ss_pred HHHHHccC--CCcchhhhhHHHHHHHHHhhh--hhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH
Confidence 44444433 333446566655544 33311 1111112356788999999999999999999999999732 222221
Q ss_pred HHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHh
Q 000714 102 VLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNL 181 (1335)
Q Consensus 102 i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nL 181 (1335)
-.+..|..-+-++....|..+.-.|.-.-.. ... ....+....+.+.+...+.........+...-+.+|--|
T Consensus 85 ----~~ve~L~~~~~s~keq~rdissi~Lktvi~n-l~P--~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 85 ----TIVENLCSNMLSGKEQLRDISSIGLKTVIAN-LPP--SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred ----HHHHHHhhhhccchhhhccHHHHHHHHHHhc-CCC--ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 1233444443444444444444444433331 101 112234444555555555443221111111111222222
Q ss_pred h---cCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHH
Q 000714 182 S---TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAE 258 (1335)
Q Consensus 182 s---~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~ 258 (1335)
+ +........ ...+.+..++.-+.+....++..++.+|+.++..-+ ...-.+.+..|++-|..+........
T Consensus 158 ~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~rt 232 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLSNRTQMSATRT 232 (1233)
T ss_pred HHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHHH
Confidence 2 111110000 123444556666666777899999999998875422 22235667777777766644344444
Q ss_pred HHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCCh
Q 000714 259 AAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSP 338 (1335)
Q Consensus 259 Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~ 338 (1335)
-..+|..++.. ...|-----...+|.+.+.++.-. ..++.+++.+..++.-+-...+.-|... .+
T Consensus 233 ~Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e------~~dDELrE~~lQale~fl~rcp~ei~p~--------~p 297 (1233)
T KOG1824|consen 233 YIQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIE------EDDDELREYCLQALESFLRRCPKEILPH--------VP 297 (1233)
T ss_pred HHHHHHHHHHH-hcchhhcccchhhHHHHHHhcccc------cCcHHHHHHHHHHHHHHHHhChhhhccc--------ch
Confidence 55556655531 111111111235778888775432 2358899999888776543221111110 00
Q ss_pred hHHHhHhhhhHHHHHhhcccc-cC--CCCCCchhhHHHHHHhhCCC--CchhHHHHHHHHHHHHhC-Ccchhhhhccccc
Q 000714 339 AQVADTLGALASALMIYDSKA-ES--TKPSDPLIVEQTLVNQFKPR--LPFLVQERTIEALASLYG-NPLLSIKLENSEA 412 (1335)
Q Consensus 339 ~~i~~~~Gal~~ll~~l~~~~-~s--~~~~~~~~i~~~Lv~LL~~~--~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~ 412 (1335)
..+...+..|.|-- -+.... ++ ....++..-... -.--+.. -+..+|..|++++..+.. +.+.-..+. ...
T Consensus 298 ei~~l~l~yisYDP-Ny~yd~~eDed~~~~ed~eDde~-~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~-q~l 374 (1233)
T KOG1824|consen 298 EIINLCLSYISYDP-NYNYDTEEDEDAMFLEDEEDDEQ-DDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFY-QTL 374 (1233)
T ss_pred HHHHHHHHHhccCC-CCCCCCccchhhhhhhccccchh-ccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHH-HHh
Confidence 00000011111000 000000 00 000000000000 0000000 124478999999988744 333322222 223
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHH-----hhccc-----------HHHHHH----HhcCCCHHHHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL-----QGREG-----------IQLLIS----LLGLSSEQQQEC 472 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i-----~~~g~-----------I~~Lv~----lL~~~~~~v~~~ 472 (1335)
-|.++.-++...+.|+.....++..+-...+...... .+.|| ++.+|+ .+++.+.+.+..
T Consensus 375 ~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~ 454 (1233)
T KOG1824|consen 375 GPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQG 454 (1233)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhh
Confidence 3556666666666777666555544432221110000 11122 233333 344444455556
Q ss_pred HHHHHHHhccCChHhHHHHHh--cCCHHHHHHhhccC--ChHHHHHHHHHHHHH-hccChhhH-HHHHhcCcHHHHHHHh
Q 000714 473 SVALLCLLSNENDDSKWAITA--AGGIPPLVQILESG--SAKAKEDSASILRNL-CNHSEDIR-ACVESADAVPALLWLL 546 (1335)
Q Consensus 473 A~~aL~nLs~~~~~~r~~i~~--~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL-~~~~~~~r-~~i~~~g~i~~Lv~LL 546 (1335)
+...|..+....|. .+.+ -..+|.++..|.+. +...+..+...|.++ +.+.++.= ..+ .-..++++...
T Consensus 455 cf~lL~eli~~lp~---~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~--~~Ls~~v~~aV 529 (1233)
T KOG1824|consen 455 CFLLLTELINVLPG---ALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL--SALSPPVVAAV 529 (1233)
T ss_pred HHHHHHHHHHhCcc---hhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch--hhhhhHHHHHh
Confidence 66666666533232 1222 13577777777765 345566666655554 44333211 111 12334444445
Q ss_pred hcCCHHHHHHHHHHHHHhhcc---CCC-------CcHH----HHHHHhc--CCCcchHHHHHHHHHHhhhhcCchHHHHH
Q 000714 547 KNGSANGKEIAAKTLNHLIHK---SDT-------ATIS----QLTALLT--SDLPESKVYVLDALKSMLSVVSFSDILRE 610 (1335)
Q Consensus 547 ~~~~~~~k~~Aa~aL~~L~~~---~~~-------~~i~----~Lv~LL~--s~~~~~k~~a~~aL~~L~~~~~~~~~~~~ 610 (1335)
.+.-..+-..|..+...+... ..+ ..+. .-...|. +.+.++|+.++.|.+.+.+.+. +..+.
T Consensus 530 ~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg--D~l~~ 607 (1233)
T KOG1824|consen 530 GDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG--DFLGN 607 (1233)
T ss_pred cCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh--hhhhh
Confidence 454455555555555444321 111 1122 2233343 3567899999999998766443 22222
Q ss_pred hhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccCh
Q 000714 611 GSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 690 (1335)
Q Consensus 611 ~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~ 690 (1335)
-. ...++.+++-| +++-+|-.|++|+..++...-+....-.-..+++.+...++............++..+.....
T Consensus 608 eL--~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~ 683 (1233)
T KOG1824|consen 608 EL--PRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYS 683 (1233)
T ss_pred hh--HHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 23355555555 688899999999999997744433233334567777777776666666666666666654322
Q ss_pred hhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChh-hHHHHHHHHHHH
Q 000714 691 ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARL 769 (1335)
Q Consensus 691 ~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~-~k~~A~~aL~~L 769 (1335)
..-.. -.-.-++..+-.++..+.-.+...|.+.|..+...++...-.+.+-+++-+.+++++.... ...+++.-+...
T Consensus 684 ~~~~~-~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~a 762 (1233)
T KOG1824|consen 684 DSIPA-ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQA 762 (1233)
T ss_pred ccccH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHH
Confidence 21111 1112233444456666777777899999999998887777777778888888888888777 344444444443
Q ss_pred h
Q 000714 770 L 770 (1335)
Q Consensus 770 l 770 (1335)
+
T Consensus 763 l 763 (1233)
T KOG1824|consen 763 L 763 (1233)
T ss_pred H
Confidence 3
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.67 E-value=9.1e-06 Score=96.54 Aligned_cols=318 Identities=14% Similarity=0.099 Sum_probs=219.0
Q ss_pred hhHHHHHHhhCCCCchhHHHHHHHHHHHHhCC-cchhhhhcc-----cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhcc
Q 000714 369 IVEQTLVNQFKPRLPFLVQERTIEALASLYGN-PLLSIKLEN-----SEAKRLLVGLITMATNEVQEELVRALLKLCNNE 442 (1335)
Q Consensus 369 ~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~-~~~~~~i~~-----~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~ 442 (1335)
.....++.+++..+.....++...-+..+... +.....+.+ .+...+++.+|...+..+...+...|..+.+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 45667788887766666777777777766553 333333332 356677888998888899999999999987654
Q ss_pred CchhHHHhhcccHHHHHHHhcCC-CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHH
Q 000714 443 GSLWRALQGREGIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASIL 519 (1335)
Q Consensus 443 ~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL 519 (1335)
..........--...|...+++. +...+..|+.+|..|.. .++.|..+.+.++++.|+.+|+.. +...+..++-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33211100001123445555543 46788888999999985 588899999999999999999864 457889999999
Q ss_pred HHHhccChhhHHHHHhcCcHHHHHHHhhcCCH-HHHHHHHHHHHHhhccCCC-------------CcHHHHHHHhcC---
Q 000714 520 RNLCNHSEDIRACVESADAVPALLWLLKNGSA-NGKEIAAKTLNHLIHKSDT-------------ATISQLTALLTS--- 582 (1335)
Q Consensus 520 ~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~-~~k~~Aa~aL~~L~~~~~~-------------~~i~~Lv~LL~s--- 582 (1335)
+-|+.. ++..+...+.+.++.|+++++.... .+-+.+..+|.|+...+.. ..+.+++..|..
T Consensus 212 WlLSF~-~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFN-PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhcc-HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 999985 6777777778999999999998654 4568888999999875411 122333344432
Q ss_pred CCcchHH---------------------HHHHHHHHhhhhc-Cc--hHHHHHhh-----hhcchHHHHHHhhc-CCCHHH
Q 000714 583 DLPESKV---------------------YVLDALKSMLSVV-SF--SDILREGS-----AANDAVETMIKILS-STKEET 632 (1335)
Q Consensus 583 ~~~~~k~---------------------~a~~aL~~L~~~~-~~--~~~~~~~i-----~~~~~i~~Lv~LL~-s~~~~v 632 (1335)
++++..+ |..+.....+.-. .+ ...-++.+ .....+..|+++|. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 2333221 1111111111100 00 00111111 12346789999994 667888
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHcc
Q 000714 633 QAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 633 ~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~ 688 (1335)
...|+.=++.+++..|..|..+.+-|+=..+++++.+++++++.+|..|+-.++.+
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999888888888999999999999999999999999999888654
No 49
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.64 E-value=2.3e-05 Score=93.18 Aligned_cols=349 Identities=15% Similarity=0.103 Sum_probs=219.6
Q ss_pred CCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHh------cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 000714 64 SQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKVLL------GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQG 136 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s-~~~~vk~~aa~~L~~L~~~~~~~~~i~~------~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~ 136 (1335)
..++..++.+|+. +.+++..+....+..+..+.+.+...+. .+...+++.+|..++.-+...|...|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 4677888998875 5668889999999999877776655443 24567888999988888888888888888763
Q ss_pred CCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC--hhHHH
Q 000714 137 GAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ--SSTQA 214 (1335)
Q Consensus 137 ~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~--~~v~~ 214 (1335)
+.... ......-...-|.+++++... ...+..++.+|..|.. .+.++..+.+.+|++.|+.+|+... ...+-
T Consensus 132 ~~~~~---~~~~l~~~~~~l~~~l~~~~~--~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 132 GLAKM---EGSDLDYYFNWLKEQLNNITN--NDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred Ccccc---chhHHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHH
Confidence 32111 100000122334555554422 2244456778888774 4567777888899999999998743 47788
Q ss_pred HHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC------HHHHHHHHHCCChHHHHH
Q 000714 215 HVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC------KDARREIAGSNGIPAMIN 288 (1335)
Q Consensus 215 ~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~------~e~r~~i~~~Ggi~~Lv~ 288 (1335)
+++.++|.|+...+ ....+...+.++.|+++++......+.+-+..+|.|+...+ ......+++.|.++.+-.
T Consensus 206 ~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~ 284 (429)
T cd00256 206 QSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQS 284 (429)
T ss_pred HHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHH
Confidence 99999998875543 55566778999999999998777789999999999999643 124456777777665555
Q ss_pred HhcCCCccchhhhhHHHHHHHHH-------HHHHHhhcCCchhhhhh-cccccCCCChhHHHhHhhhhHHHHHhhccccc
Q 000714 289 ATIAPSKEFMQGEYAQALQENAM-------CALANISGGLSNVISSL-GQSLESCSSPAQVADTLGALASALMIYDSKAE 360 (1335)
Q Consensus 289 lL~~~~~e~~~~~~d~~v~~~A~-------~aL~nLs~g~~~~i~~L-~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~ 360 (1335)
+....- .|+++.+.-- .-...++.=..+..... |.+.=+|..+... .|+..
T Consensus 285 L~~rk~-------~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~------------FW~EN-- 343 (429)
T cd00256 285 LEQRKY-------DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK------------FWREN-- 343 (429)
T ss_pred HhcCCC-------CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch------------HHHHH--
Confidence 543332 1333332111 11122221000000000 0111111111000 01100
Q ss_pred CCCCC--CchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000714 361 STKPS--DPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLK 437 (1335)
Q Consensus 361 s~~~~--~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~ 437 (1335)
...| +.-.+...|+.++....+.....-|..=++.+++ .|..+..+..-|+-..+++++.+.+++++.+|..++..
T Consensus 344 -~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 344 -ADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred -HHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0011 1224577888888655444344445555666655 46777777788999999999999999999999999988
Q ss_pred hhhc
Q 000714 438 LCNN 441 (1335)
Q Consensus 438 Ls~~ 441 (1335)
+..+
T Consensus 423 lm~~ 426 (429)
T cd00256 423 LMVH 426 (429)
T ss_pred HHHh
Confidence 7543
No 50
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.0013 Score=80.28 Aligned_cols=353 Identities=14% Similarity=0.155 Sum_probs=242.5
Q ss_pred CCCCCCCchhHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc--CCHHHHHHHH
Q 000714 9 TTSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS--GSLAVKIQAA 86 (1335)
Q Consensus 9 ~~~~~~~~~~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s--~~~~vk~~aa 86 (1335)
+.++...++...+|..+.+++-++ .-.++|+.|+.-|-.+++ ..|..++ ..++++|+.-|+. .|++.-.++.
T Consensus 11 ~~q~~k~~s~aETI~kLcDRvess-TL~eDRR~A~rgLKa~sr---kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~L 84 (970)
T KOG0946|consen 11 GQQPPKQQSAAETIEKLCDRVESS-TLLEDRRDAVRGLKAFSR---KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYAL 84 (970)
T ss_pred cCCCCccccHHhHHHHHHHHHhhc-cchhhHHHHHHHHHHHHH---HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHH
Confidence 345667788899999999999764 456899999999999999 7788887 6789999999974 5678888899
Q ss_pred HHHHHhhcCch-------hH----------HHHH-hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhh
Q 000714 87 TVLGSLCKENE-------LR----------VKVL-LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS 148 (1335)
Q Consensus 87 ~~L~~L~~~~~-------~~----------~~i~-~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~ 148 (1335)
.++..+...++ .+ ..++ ..+-|..|+..+...+..+|..+...|.++-.... -....-++.
T Consensus 85 dTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~ 163 (970)
T KOG0946|consen 85 DTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP-TELQDALLV 163 (970)
T ss_pred HHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 99998874432 11 2233 35889999999999999999999999988877321 112222355
Q ss_pred hcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC----hhHHHHHHHHHHHHh
Q 000714 149 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ----SSTQAHVCFLLACMM 224 (1335)
Q Consensus 149 ~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~----~~v~~~aa~~L~~La 224 (1335)
---+|..|+++|..... .++..+.-.|..|+.+++.....++=.++.+.|.+++.... .-+...+..++-||.
T Consensus 164 ~P~gIS~lmdlL~DsrE---~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSRE---PIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred CchhHHHHHHHHhhhhh---hhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHH
Confidence 66779999999998642 26666677788888776655554555678888888887632 236677888888888
Q ss_pred hcCcchhhhHhccccHHHHHHHhcCC---CC---------HHHHHHHHHHHHhcccC------CHHHHHHHHHCCChHHH
Q 000714 225 EEDVSVCSRVLAADATKQLLKLLGSG---NE---------ASVRAEAAGALKSLSDH------CKDARREIAGSNGIPAM 286 (1335)
Q Consensus 225 ~~~~~~~~~i~~~g~i~~Lv~lL~s~---~~---------~~vr~~Aa~aL~nLs~~------~~e~r~~i~~~Ggi~~L 286 (1335)
..+..+...+.+.+.||.|.++|.-. ++ ..-...+..+++.+.+- -..++.++.+.+++..|
T Consensus 241 K~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~L 320 (970)
T KOG0946|consen 241 KNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVL 320 (970)
T ss_pred hhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHH
Confidence 88888889999999999999888542 21 11123344555554421 12456788999999999
Q ss_pred HHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCC
Q 000714 287 INATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSD 366 (1335)
Q Consensus 287 v~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~ 366 (1335)
..++.++. ....++.-+..++++.-.|+...-..|+... +. +.-+
T Consensus 321 c~il~~~~-------vp~dIltesiitvAevVRgn~~nQ~~F~~v~----------------------~p------~~~~ 365 (970)
T KOG0946|consen 321 CTILMHPG-------VPADILTESIITVAEVVRGNARNQDEFADVT----------------------AP------SIPN 365 (970)
T ss_pred HHHHcCCC-------CcHhHHHHHHHHHHHHHHhchHHHHHHhhcc----------------------CC------CCCC
Confidence 99998863 1366777777777777665433222221100 00 0001
Q ss_pred ch-hhHHHHHHhhCCCCchhHHHHHHHHHHHH-hCCcchhhh
Q 000714 367 PL-IVEQTLVNQFKPRLPFLVQERTIEALASL-YGNPLLSIK 406 (1335)
Q Consensus 367 ~~-~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L-~~~~~~~~~ 406 (1335)
|. .+.-.++.+.....++..|..+...+... +.|.+.+..
T Consensus 366 Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~ 407 (970)
T KOG0946|consen 366 PRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK 407 (970)
T ss_pred CccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH
Confidence 22 23445566666667777888777777665 556554443
No 51
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=0.0012 Score=80.77 Aligned_cols=643 Identities=16% Similarity=0.142 Sum_probs=341.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC-HHHHHHHHHHHHh-cccCCHHHHH
Q 000714 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKS-LSDHCKDARR 275 (1335)
Q Consensus 198 I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~vr~~Aa~aL~n-Ls~~~~e~r~ 275 (1335)
++.|.. .-+++...+..|-.-|.++...+- .+.+..|.+.|.+.+. ...|..|.-.|.| |.+.+++.+.
T Consensus 4 ~~~le~-tlSpD~n~~~~Ae~~l~~~~~~nf--------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 4 LELLEK-TLSPDQNVRKRAEKQLEQAQSQNF--------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHH-HcCCCcchHHHHHHHHHHHHhccH--------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444555 345667777777777776654421 3455666776665433 4677777777876 4444444443
Q ss_pred HHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhh
Q 000714 276 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIY 355 (1335)
Q Consensus 276 ~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l 355 (1335)
...+ +-+.- +.+....++.++..+|.- ..|+.....+...++|+.+ .+
T Consensus 75 ~~~q--------RWl~l------~~e~reqVK~~il~tL~~----------------~ep~~~s~Aaq~va~IA~~--El 122 (859)
T KOG1241|consen 75 QYQQ--------RWLQL------PAEIREQVKNNILRTLGS----------------PEPRRPSSAAQCVAAIACI--EL 122 (859)
T ss_pred HHHH--------HHHcC------CHHHHHHHHHHHHHHcCC----------------CCCCccchHHHHHHHHHHh--hC
Confidence 3322 11110 111123444454444421 0111111112333444321 11
Q ss_pred cccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc-cccHHHHHHHHcC--CCHHHHHHHH
Q 000714 356 DSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-SEAKRLLVGLITM--ATNEVQEELV 432 (1335)
Q Consensus 356 ~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~--~~~~v~~~A~ 432 (1335)
..+ ..-.++..++.......+..+++...++++.+|.+-+-...... ...+-.++.-++. ++..+|-.|.
T Consensus 123 P~n-------~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~ 195 (859)
T KOG1241|consen 123 PQN-------QWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAAL 195 (859)
T ss_pred chh-------hCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHH
Confidence 110 11134555555555555557899999999999996544433333 3344555555543 4668999999
Q ss_pred HHHHHhhhccCchhHHHhhccc-HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHH
Q 000714 433 RALLKLCNNEGSLWRALQGREG-IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA 511 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~~g~-I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v 511 (1335)
.+|.|--.....+-..-.+..- .+...+.-.+++.+++..|..+|..|..-.-+.-..-+.....+.-+.-+++.++++
T Consensus 196 ~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deV 275 (859)
T KOG1241|consen 196 NALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEV 275 (859)
T ss_pred HHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9998753221111000001111 233444556778899999999998886422222222233334455566778889999
Q ss_pred HHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCC-HHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCc----c
Q 000714 512 KEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS-ANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP----E 586 (1335)
Q Consensus 512 ~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~-~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~----~ 586 (1335)
..++...-.++|. +++--.+. .| +....+. |..+..+-.++.. .+|.|+.+|...++ +
T Consensus 276 alQaiEFWstice--EEiD~~~e-~~------e~~d~~~~p~~~~fa~~a~~~--------v~P~Ll~~L~kqde~~d~D 338 (859)
T KOG1241|consen 276 ALQAIEFWSTICE--EEIDLAIE-YG------EAVDQGLPPSSKYFARQALQD--------VVPVLLELLTKQDEDDDDD 338 (859)
T ss_pred HHHHHHHHHHHHH--HHHHHHHH-HH------HHhhcCCCchhhHHHHHHHhH--------hhHHHHHHHHhCCCCcccc
Confidence 9999988888886 33321111 11 1111121 1233444444433 35667777754221 1
Q ss_pred ---hHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHH
Q 000714 587 ---SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSV 663 (1335)
Q Consensus 587 ---~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~L 663 (1335)
.-..+..||.-.+... .++++ ...+|.+-.-+++++-.-++.++-+++.+-.+....+..-...+++|.+
T Consensus 339 dWnp~kAAg~CL~l~A~~~-~D~Iv------~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~i 411 (859)
T KOG1241|consen 339 DWNPAKAAGVCLMLFAQCV-GDDIV------PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSI 411 (859)
T ss_pred cCcHHHHHHHHHHHHHHHh-cccch------hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHH
Confidence 2223333443221111 11111 1234444446677888999999999999998877777777788999999
Q ss_pred HHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhC-------Cc----
Q 000714 664 MKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-------DS---- 732 (1335)
Q Consensus 664 v~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~-------~~---- 732 (1335)
+.++.+.+-.+..-+++++..++.+.++..-........++.+++-+++ .+.+..+++|++.+|+. ++
T Consensus 412 i~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~ 490 (859)
T KOG1241|consen 412 INLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTD 490 (859)
T ss_pred HHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 9999988888888899999999987765222224445555666665553 46677999999999971 11
Q ss_pred hHHHHHHHCCChHHHHHHhhc---CChhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCchhHH
Q 000714 733 EVSEKAIAEEIILPATRVLCE---GTISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVATSEAL 809 (1335)
Q Consensus 733 ~~~~~~~~~g~v~~L~~ll~~---~~~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~~~al 809 (1335)
+....+ ..++..|++.... .+...+..|-.||..+.+..+. +... + ..-.....+. .+.... . ++
T Consensus 491 ~~t~~y--~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~-~vy~-~-v~~~~l~il~-kl~q~i---~-~~-- 558 (859)
T KOG1241|consen 491 PATPFY--EAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD-DVYP-M-VQKLTLVILE-KLDQTI---S-SQ-- 558 (859)
T ss_pred ccchhH--HHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH-HHHH-H-HHHHHHHHHH-HHHHHH---H-HH--
Confidence 111011 1234445555443 2223678888899999986542 2222 1 1111111111 111110 0 00
Q ss_pred HHHHHHHHhCCCCCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCC-cc--------chhhhccc
Q 000714 810 DALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPA-VL--------GDEVTGAS 880 (1335)
Q Consensus 810 ~~L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~-~~--------g~~i~~~g 880 (1335)
+++...+.| +. .++.-.+.+|.++.+.+...-++..+.++.++-+++..... .. |..+-..|
T Consensus 559 ----~l~~~dr~q---~~--eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg 629 (859)
T KOG1241|consen 559 ----ILSLADRAQ---LN--ELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG 629 (859)
T ss_pred ----hccHhhHHH---HH--HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh
Confidence 111111110 02 34444456788888888888888889999977766665111 11 22444444
Q ss_pred ccHHH---HHHHhhc---CCCchhhhhhHHHHHH--hhccccchhhcccccccchhHHHHHHHhhhhc
Q 000714 881 GCISS---IARRVIS---CTNPKVKIGGAALLIC--AAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSV 940 (1335)
Q Consensus 881 ~~~~~---~~~~~l~---s~~~~~k~~a~~~~i~--~~k~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 940 (1335)
+-... -|.|||. |.-.+..+-++....+ ++|- .++ +-.-+|--+.+.|++++.+
T Consensus 630 ~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ra-----L~~-~i~py~d~~mt~Lvq~Lss 691 (859)
T KOG1241|consen 630 KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARA-----LED-DILPYCDELMTVLVQCLSS 691 (859)
T ss_pred HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-----HHh-hhhhHHHHHHHHHHHHccC
Confidence 43332 2344443 3334444433333322 2222 111 1235666777788887764
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=9.6e-06 Score=91.93 Aligned_cols=189 Identities=20% Similarity=0.185 Sum_probs=144.8
Q ss_pred HccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCch-hHHHHHhcCCc
Q 000714 30 RQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRVKVLLGGCI 108 (1335)
Q Consensus 30 ~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~-~~~~i~~~g~I 108 (1335)
.+.+.+.++|+.|+.+|.+++...+++.+++. .|+.++++..+++++..+|..|+.+++..+.+++ .+..+++.|+.
T Consensus 91 ~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 91 NSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGAL 168 (342)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccH
Confidence 44567889999999999999999999999984 7788888889999999999999999999997665 67889999999
Q ss_pred HHHHHhhcCCCHH-HHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChh
Q 000714 109 PPLLGLLKSSSAE-GQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEG 187 (1335)
Q Consensus 109 ~~Lv~lL~s~~~e-~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~ 187 (1335)
+.|+..|+++++. +|..|+.|+..+.. ....+...|...++...|.+.+++++.... .+..++-.+..|......
T Consensus 169 ~~Ll~~ls~~~~~~~r~kaL~AissLIR---n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~-lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 169 SKLLKILSSDDPNTVRTKALFAISSLIR---NNKPGQDEFLKLNGYQVLRDVLQSNNTSVK-LKRKALFLLSLLLQEDKS 244 (342)
T ss_pred HHHHHHHccCCCchHHHHHHHHHHHHHh---cCcHHHHHHHhcCCHHHHHHHHHcCCcchH-HHHHHHHHHHHHHHhhhh
Confidence 9999999976654 46888888888887 244455678888889999999999755433 444456666666654433
Q ss_pred hHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHh
Q 000714 188 FWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1335)
Q Consensus 188 ~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La 224 (1335)
....+-..+....+..+....+.++.+.+...+..+.
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 3334444566666666666677777777766664443
No 53
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.42 E-value=0.0015 Score=76.93 Aligned_cols=280 Identities=16% Similarity=0.074 Sum_probs=152.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCH
Q 000714 418 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGI 497 (1335)
Q Consensus 418 ~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I 497 (1335)
.-+++.+..-++.++.++...-.++...+..-.-..++|.+...+.++.--++..++|+++.++.+. ...|-..|-+
T Consensus 373 qni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl 449 (858)
T COG5215 373 QNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHL 449 (858)
T ss_pred HhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccc
Confidence 3456677888899999998887665543332222578888888888777789999999999999643 3344455666
Q ss_pred HHHHHhhccC---ChHHHHHHHHHHHHHhccChhhHHHHHh--cCcHHHHHHHhhcC------CHHHHHHHHHHHHHhhc
Q 000714 498 PPLVQILESG---SAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNG------SANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 498 ~~Lv~LL~~~---~~~v~~~Aa~aL~nL~~~~~~~r~~i~~--~g~i~~Lv~LL~~~------~~~~k~~Aa~aL~~L~~ 566 (1335)
+..+.-+.-| .|....++.|...||..|-++....+-. ....+.++.-|-.+ ..+.|..+-.+|..|..
T Consensus 450 ~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 450 VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 6666544433 5778889999999998763322211000 11223333332222 23344444455555533
Q ss_pred cCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC----CHHHHHHHHHHHHH
Q 000714 567 KSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST----KEETQAKSASALAG 642 (1335)
Q Consensus 567 ~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~----~~~v~~~Aa~aL~n 642 (1335)
-....+.+.+..... -...-...+ +.-+-..+... .++++-+-+..|..
T Consensus 530 ~~~d~V~~~~a~~~~-~~~~kl~~~--------------------------isv~~q~l~~eD~~~~~elqSN~~~vl~a 582 (858)
T COG5215 530 ICPDAVSDILAGFYD-YTSKKLDEC--------------------------ISVLGQILATEDQLLVEELQSNYIGVLEA 582 (858)
T ss_pred hcchhHHHHHHHHHH-HHHHHHHHH--------------------------HHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 221111111111110 000000011 11111122111 34556666666666
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhhcCChhH-HHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHH
Q 000714 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSECI-LVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQA 721 (1335)
Q Consensus 643 L~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v-~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~A 721 (1335)
+.+..+...+ -++......++++|.+.++.. -...-.++.++..+- ..+.....+..+|.|.+-++..+..+-..+
T Consensus 583 iir~~~~~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl--~e~Fe~y~~~fiPyl~~aln~~d~~v~~~a 659 (858)
T COG5215 583 IIRTRRRDIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL--EERFEQYASKFIPYLTRALNCTDRFVLNSA 659 (858)
T ss_pred HHHhcCCCcc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHhcchhHHHHHHH
Confidence 6543222111 112224556667776664433 334555666666432 222245567899999999987777777778
Q ss_pred HHHHHHHhC
Q 000714 722 TCALANLIL 730 (1335)
Q Consensus 722 a~aL~nL~~ 730 (1335)
+..+..|+.
T Consensus 660 vglvgdlan 668 (858)
T COG5215 660 VGLVGDLAN 668 (858)
T ss_pred HHHHHHHHH
Confidence 777777764
No 54
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.40 E-value=5.3e-06 Score=96.92 Aligned_cols=223 Identities=16% Similarity=0.162 Sum_probs=155.2
Q ss_pred CCcHHHHHHHhcc--CCHHHHHHHHHHHHHhhcCchhHHHHHhc-------CCcHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 000714 64 SQAVPVLVSLLRS--GSLAVKIQAATVLGSLCKENELRVKVLLG-------GCIPPLLGLLKSSSAEGQIAAAKTIYAVS 134 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s--~~~~vk~~aa~~L~~L~~~~~~~~~i~~~-------g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls 134 (1335)
.+.+..++.+|+. +++++..+....+..+..+++.+.+++.. ....++++++.+++.-++..|+..|..+.
T Consensus 54 ~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 54 DQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp --------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3556777788864 57789999999999999777665554432 25789999999999999999999999998
Q ss_pred ccCCCCccccchhhhcCChHHHHHHhhcCCCCh-hhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHh-----cc-
Q 000714 135 QGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSG-NVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLL-----TL- 207 (1335)
Q Consensus 135 ~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~-~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL-----~s- 207 (1335)
..+ ..+..-...+.++.+++.+++..... ...+..+..+|.+|. ..+.++..+.+.|+++.+..++ .+
T Consensus 134 ~~~----~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~ 208 (312)
T PF03224_consen 134 SQG----PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSN 208 (312)
T ss_dssp TST----TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH-------
T ss_pred HcC----CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCC
Confidence 832 22222222577899999998743322 224567888999997 5678888899999999999999 22
Q ss_pred -CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHH-HHHHHHHCCChHH
Q 000714 208 -GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD-ARREIAGSNGIPA 285 (1335)
Q Consensus 208 -~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e-~r~~i~~~Ggi~~ 285 (1335)
....++-+++.++|.|+.. +.....+.+.+.++.|+++++......+.+-+..+|.|+.....+ +...++..|+++.
T Consensus 209 ~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 209 SSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp --HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred CCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 3456788999999977644 457788888899999999999887778999999999999975543 8888888888887
Q ss_pred HHHHhcC
Q 000714 286 MINATIA 292 (1335)
Q Consensus 286 Lv~lL~~ 292 (1335)
+-.+...
T Consensus 288 l~~L~~r 294 (312)
T PF03224_consen 288 LQNLSER 294 (312)
T ss_dssp HHHHHSS
T ss_pred HHHHhcC
Confidence 7666544
No 55
>PF05536 Neurochondrin: Neurochondrin
Probab=98.40 E-value=0.00034 Score=87.11 Aligned_cols=237 Identities=23% Similarity=0.261 Sum_probs=161.9
Q ss_pred hHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCCh---HHHHHhcccCCcHHHHHHHhcc-------CCHHHHHHHHH
Q 000714 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE---NAFSAVGSHSQAVPVLVSLLRS-------GSLAVKIQAAT 87 (1335)
Q Consensus 18 ~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~---~ar~~i~~~~g~v~~Lv~lL~s-------~~~~vk~~aa~ 87 (1335)
...++.+|+..|++. ++++|..++-.+-.+.+.++ ..++.|. +.=+.+.+-++|++ .....+.-+..
T Consensus 3 ~~~~l~~c~~lL~~~--~D~~rfagL~lvtk~~~~~~~~~~~~~~v~-~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs 79 (543)
T PF05536_consen 3 QSASLEKCLSLLKSA--DDTERFAGLLLVTKLLDADDEDSQTRRRVF-EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS 79 (543)
T ss_pred chHHHHHHHHHhccC--CcHHHHHHHHHHHHcCCCchhhHHHHHHHH-HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence 356799999999874 47899999999999998655 2333343 33335777788887 23467888999
Q ss_pred HHHHhhcCchhH--HHHHhcCCcHHHHHhhcCCCH-HHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCC
Q 000714 88 VLGSLCKENELR--VKVLLGGCIPPLLGLLKSSSA-EGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 164 (1335)
Q Consensus 88 ~L~~L~~~~~~~--~~i~~~g~I~~Lv~lL~s~~~-e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~ 164 (1335)
+|..+|.+++.. .+++ +.||.|++.+.+.+. ++...|..+|..++. .+.|++.+.+.|++|.|.+.+.++.
T Consensus 80 vL~~f~~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias----~~~G~~aLl~~g~v~~L~ei~~~~~ 153 (543)
T PF05536_consen 80 VLAAFCRDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIAS----SPEGAKALLESGAVPALCEIIPNQS 153 (543)
T ss_pred HHHHHcCChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHc----CcHhHHHHHhcCCHHHHHHHHHhCc
Confidence 999999987754 4554 679999999988777 888999999999998 8888999999999999999998842
Q ss_pred CChhhHHHHHHHHHHHhhcCCh-hhHHH--HHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcch-hhhHhc----
Q 000714 165 KSGNVVDNLLTGALRNLSTSTE-GFWAA--TVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV-CSRVLA---- 236 (1335)
Q Consensus 165 ~~~~~v~~~a~~aL~nLs~~~~-~~~~~--i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~-~~~i~~---- 236 (1335)
...+.+...|.+++...+ ..|.. -.-...++.+...........+-..+..|..+....+.. ......
T Consensus 154 ----~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 154 ----FQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred ----chHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 234556777777765433 11110 000133455666666666667777788887776443211 111112
Q ss_pred cccHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 000714 237 ADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1335)
Q Consensus 237 ~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs 267 (1335)
..+...+-.+|++......|..+......|.
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3344556667777666566666665555555
No 56
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00032 Score=85.53 Aligned_cols=363 Identities=17% Similarity=0.191 Sum_probs=239.2
Q ss_pred cccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHH
Q 000714 237 ADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1335)
Q Consensus 237 ~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~n 316 (1335)
+..|+.|+.-+.+..-.+-|+.|+..|..++. +.|..+. +.|+++|+..|+... .|..+...++.++.+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~-------~D~E~ik~~LdTl~i 89 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDY-------MDPEIIKYALDTLLI 89 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhcc-------CCHHHHHHHHHHHHH
Confidence 34566777777666556789999999999985 4455444 457888888887643 257788888888888
Q ss_pred hhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHH
Q 000714 317 ISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALAS 396 (1335)
Q Consensus 317 Ls~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~ 396 (1335)
+....+.. +..+++ + ..+. .-.|.+..
T Consensus 90 l~~~dd~~-----~v~dds--~--qsdd-----------------------------------------~g~~iae~--- 116 (970)
T KOG0946|consen 90 LTSHDDSP-----EVMDDS--T--QSDD-----------------------------------------LGLWIAEQ--- 116 (970)
T ss_pred HHhcCcch-----hhcccc--h--hhhH-----------------------------------------HHHHHHHH---
Confidence 76532100 000000 0 0000 00111111
Q ss_pred HhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccC-chhHHHh-hcccHHHHHHHhcCCCHHHHHHHH
Q 000714 397 LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQ-GREGIQLLISLLGLSSEQQQECSV 474 (1335)
Q Consensus 397 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~-~~~~~i~-~~g~I~~Lv~lL~~~~~~v~~~A~ 474 (1335)
.|...+.|..++..+...+..||..++..|.++-+..+ +.+.++. -.-||..|+.+|.+..+.++..+.
T Consensus 117 ---------fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 117 ---------FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred ---------HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 22346778889999999999999999999998865544 4444444 457899999999999999999999
Q ss_pred HHHHHhccCChHhHHHHHhcCCHHHHHHhhccC----ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhc--
Q 000714 475 ALLCLLSNENDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN-- 548 (1335)
Q Consensus 475 ~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~----~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~-- 548 (1335)
-.|..|+++++.....++=.++...|..+++.. ..-+.+.|...|.||-+++..++..+.+.+.+|.|..+|..
T Consensus 188 LlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~ 267 (970)
T KOG0946|consen 188 LLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFE 267 (970)
T ss_pred HHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCccc
Confidence 999999988887777777778999999999865 23578899999999999989999999999999999987754
Q ss_pred -CCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcC-CCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhc
Q 000714 549 -GSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILS 626 (1335)
Q Consensus 549 -~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s-~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~ 626 (1335)
++.++-.+...-..|+ ...-+++..|.+ +++..-.+++ +..+...+++..|..++.
T Consensus 268 ~~d~Ev~~W~~Qrv~Nv------~~~Lqivr~lVsP~Nt~~~~~q~----------------qk~l~ss~ll~~Lc~il~ 325 (970)
T KOG0946|consen 268 FGDGEVFGWSTQRVQNV------IEALQIVRSLVSPGNTSSITHQN----------------QKALVSSHLLDVLCTILM 325 (970)
T ss_pred ccCcccccccHHHHHHH------HHHHHHHHHhcCCCCcHHHHHHH----------------HHHHHHcchHHHHHHHHc
Confidence 2322111111111111 001122333322 2322211111 223445667888888877
Q ss_pred CC--CHHHHHHHHHHHHHHhcCChhhHHHHHhcCC------hHHHHHhh----hc-CChhHHHHHHHHHHHHHccChhhh
Q 000714 627 ST--KEETQAKSASALAGIFETRKDLRESSIAVKT------LWSVMKLL----DV-GSECILVEASRCLAAIFLSVRENR 693 (1335)
Q Consensus 627 s~--~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~------v~~Lv~LL----~~-~~~~v~~~aa~aL~~L~~~~~~~~ 693 (1335)
++ ..+++..+.-+++++.+++..++..+....+ .+.++-++ .+ .....+...+.++.+.+..+..-+
T Consensus 326 ~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq 405 (970)
T KOG0946|consen 326 HPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQ 405 (970)
T ss_pred CCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhH
Confidence 65 6789999999999999998889888855432 22333333 23 334556667788888886655444
Q ss_pred H
Q 000714 694 E 694 (1335)
Q Consensus 694 ~ 694 (1335)
+
T Consensus 406 ~ 406 (970)
T KOG0946|consen 406 R 406 (970)
T ss_pred H
Confidence 4
No 57
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0009 Score=82.20 Aligned_cols=419 Identities=16% Similarity=0.145 Sum_probs=236.7
Q ss_pred ChHHHHHHhhcCCCC-hhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcch
Q 000714 152 VVPVLWEQLKNGLKS-GNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSV 230 (1335)
Q Consensus 152 ~Ip~Lv~LL~~~~~~-~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~ 230 (1335)
++-.+++.+++.-.+ ...+...|.++|.++++ .|.. ....+.+.+++++.++.++.+|+.|..++....++.
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s-~Ema------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l 176 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICS-PEMA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL 176 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCC-HHHh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH
Confidence 344445555543222 22366788899999984 2222 245667788899999999999999998887665533
Q ss_pred hhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCc-----c-chhhhhHH
Q 000714 231 CSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSK-----E-FMQGEYAQ 304 (1335)
Q Consensus 231 ~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~-----e-~~~~~~d~ 304 (1335)
. +-.++..-++|.+.+. .+.......+..++..+++.-.-+.+ .++-|+..|+.-.. | ...+-.|+
T Consensus 177 ~-----e~f~~~~~~lL~ek~h-GVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dP 248 (866)
T KOG1062|consen 177 V-----EHFVIAFRKLLCEKHH-GVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDP 248 (866)
T ss_pred H-----HHhhHHHHHHHhhcCC-ceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCch
Confidence 2 3345667777777766 77777777777777766665555554 45555555443211 1 12334568
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCch
Q 000714 305 ALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPF 384 (1335)
Q Consensus 305 ~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~ 384 (1335)
.+|-..+..|.-+..++...-+.+. |.++- +..+.+.++..-++ ....+....+.-.+..
T Consensus 249 FLQi~iLrlLriLGq~d~daSd~M~-------------DiLaq------vatntdsskN~GnA-ILYE~V~TI~~I~~~~ 308 (866)
T KOG1062|consen 249 FLQIRILRLLRILGQNDADASDLMN-------------DILAQ------VATNTDSSKNAGNA-ILYECVRTIMDIRSNS 308 (866)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHH-------------HHHHH------HHhcccccccchhH-HHHHHHHHHHhccCCc
Confidence 8888888888777765443332221 21111 11111111111111 1122222333333444
Q ss_pred hHHHHHHHHHHHHhCCcch-hhhh----------cccccH----HHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHH
Q 000714 385 LVQERTIEALASLYGNPLL-SIKL----------ENSEAK----RLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 449 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~-~~~i----------~~~g~i----~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i 449 (1335)
..|..|+.+|+.+..++++ -+-+ .+..++ .+++++|++.+..+|+.|...+..|....+ .+
T Consensus 309 ~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--v~-- 384 (866)
T KOG1062|consen 309 GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--VR-- 384 (866)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH--
Confidence 4777888888877555432 1111 112233 358899999999999999999988875532 22
Q ss_pred hhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcc-CChHhHHHHH-------------hcCCHHHHHHhhccCChHHHHHH
Q 000714 450 QGREGIQLLISLLGLSSEQQQECSVALLCLLSN-ENDDSKWAIT-------------AAGGIPPLVQILESGSAKAKEDS 515 (1335)
Q Consensus 450 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~-~~~~~r~~i~-------------~~g~I~~Lv~LL~~~~~~v~~~A 515 (1335)
.-++.|+.+|...+++.+...+.-+..++. ..|+.+|.|- +...+..++.++.++.++..+.+
T Consensus 385 ---~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~ 461 (866)
T KOG1062|consen 385 ---VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYA 461 (866)
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHH
Confidence 336788999998899999999988888863 4566777651 22235555555555534443333
Q ss_pred HHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh---cc----------CCCCcHHHHHHHhc-
Q 000714 516 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI---HK----------SDTATISQLTALLT- 581 (1335)
Q Consensus 516 a~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~---~~----------~~~~~i~~Lv~LL~- 581 (1335)
..-|+.-... .+...+.+ +...+.+.|++..-. .. .++..+..|-+++.
T Consensus 462 ~~rLy~a~~~--~~~~~is~---------------e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~ 524 (866)
T KOG1062|consen 462 VLRLYLALSE--DTLLDISQ---------------EPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMS 524 (866)
T ss_pred HHHHHHHHhh--hhhhhhhh---------------hhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHh
Confidence 3333322211 11111111 112344555554332 11 11233444555543
Q ss_pred -CCCcchHHHHHHHHHHhhhhcCc-hHHHHHhhhhcchHHHHHH-hhcCCCHHHHHHHHHH
Q 000714 582 -SDLPESKVYVLDALKSMLSVVSF-SDILREGSAANDAVETMIK-ILSSTKEETQAKSASA 639 (1335)
Q Consensus 582 -s~~~~~k~~a~~aL~~L~~~~~~-~~~~~~~i~~~~~i~~Lv~-LL~s~~~~v~~~Aa~a 639 (1335)
+.+..++.|+..++..+.+.+.. .+ -+..++. +..+-+.++|..|..-
T Consensus 525 ~~s~~~tk~yal~Al~KLSsr~~s~~~----------ri~~lI~~~~~s~~~elQQRa~E~ 575 (866)
T KOG1062|consen 525 HSSDSTTKGYALTALLKLSSRFHSSSE----------RIKQLISSYKSSLDTELQQRAVEY 575 (866)
T ss_pred ccchHHHHHHHHHHHHHHHhhccccHH----------HHHHHHHHhcccccHHHHHHHHHH
Confidence 34567889999888887664332 22 1444444 4456688888877654
No 58
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.31 E-value=0.0022 Score=77.56 Aligned_cols=320 Identities=12% Similarity=0.106 Sum_probs=192.8
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchh---hhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCch--
Q 000714 371 EQTLVNQFKPRLPFLVQERTIEALASLYGNPLLS---IKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL-- 445 (1335)
Q Consensus 371 ~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~-- 445 (1335)
.....+.|++.+. .+|+.++..++.++.--..+ +.+..-| -.|.+.|....+++.-..+.+++.++...+-.
T Consensus 801 ~stiL~rLnnksa-~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 801 CSTILWRLNNKSA-KVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 3445555665554 48888888888775422222 1222222 23677788888899888888887776554321
Q ss_pred hHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHh---HHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHH
Q 000714 446 WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---KWAITAAGGIPPLVQILESGSAKAKEDSASILRNL 522 (1335)
Q Consensus 446 ~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~---r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL 522 (1335)
...+ .+-+|.|..+|++.+.++|+++...+..++...++. |+.+. .--.|+.+|+....++|.+|...++.+
T Consensus 878 ~pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 878 TPPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYI 952 (1172)
T ss_pred CCCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 1223 377899999999999999999999999998766653 33332 234588899998999999999999998
Q ss_pred hccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC-CcHHHHHHHhcCCCcchHHHHHHHHHHhhhh
Q 000714 523 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-ATISQLTALLTSDLPESKVYVLDALKSMLSV 601 (1335)
Q Consensus 523 ~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~ 601 (1335)
+.. |--+..+..|+.-|+...-..|....-++.-.+....+ .+++.|+.--+...-.+|..+..++..+..
T Consensus 953 aka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Fe- 1024 (1172)
T KOG0213|consen 953 AKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFE- 1024 (1172)
T ss_pred HHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHH-
Confidence 864 00022333344334333222222222233333332222 455556555555566678777777765432
Q ss_pred cCchHHHHHhhhh--cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh-------cCCh
Q 000714 602 VSFSDILREGSAA--NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-------VGSE 672 (1335)
Q Consensus 602 ~~~~~~~~~~i~~--~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~-------~~~~ 672 (1335)
.+.+...+ +...|.|.+-|.+.+..-+.-|+.++.+|+.+.. ..|....++.||+ ..++
T Consensus 1025 -----yigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~-------g~g~eda~iHLLN~iWpNIle~sP 1092 (1172)
T KOG0213|consen 1025 -----YIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP-------GTGCEDALIHLLNLIWPNILETSP 1092 (1172)
T ss_pred -----HHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC-------CcCcHHHHHHHHHHhhhhhcCCCh
Confidence 11111111 2346777778888999999999999999998732 3466666666663 3566
Q ss_pred hHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 000714 673 CILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 727 (1335)
Q Consensus 673 ~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~n 727 (1335)
.++..-..++..+... +...-......+-|-++...|++. -|.+.|
T Consensus 1093 hviqa~~e~~eg~r~~--------Lg~~~~~~Y~~QGLFHParkVR~~-yw~vyn 1138 (1172)
T KOG0213|consen 1093 HVIQAFDEAMEGLRVA--------LGPQAMLKYCLQGLFHPARKVRKR-YWTVYN 1138 (1172)
T ss_pred HHHHHHHHHHHHHHHH--------hchHHHHHHHHHhccCcHHHHHHH-HHHHHH
Confidence 6665555555544321 111122345556666666666554 444444
No 59
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.1e-05 Score=87.93 Aligned_cols=185 Identities=16% Similarity=0.122 Sum_probs=158.5
Q ss_pred CchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHH
Q 000714 382 LPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1335)
Q Consensus 382 ~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l 461 (1335)
.+..-++.+..-|..++.+-++...+...|+..+++..+++++..+|+.|++.+.....+++.....+.+.|+.+.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 34445677777788888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhhHHHHHhcCc
Q 000714 462 LGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRACVESADA 538 (1335)
Q Consensus 462 L~~~-~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~ 538 (1335)
+.+. +..++..|..+++++-.+++.....+...+|...|...++++ +...|..++..+..|.......+..+...+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 9855 456789999999999988888999999999999999999994 7788899999999998865666666666777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 000714 539 VPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 539 i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~ 566 (1335)
...+..+....+..+++.+..++..+..
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 7777888888888888888888776654
No 60
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.20 E-value=0.00031 Score=84.16 Aligned_cols=209 Identities=14% Similarity=0.066 Sum_probs=154.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHH
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i 491 (1335)
++..|+..|.+.++.++..++.+|..+- ..+..+.|+.+|++.++.++..++.++.....
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------- 146 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------- 146 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------
Confidence 4788999999999999999999887532 24667889999999999999888877776331
Q ss_pred HhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCC
Q 000714 492 TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA 571 (1335)
Q Consensus 492 ~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~ 571 (1335)
...+.+..+|++.++.++..|+++|+.+.. ...++.|...+.+.++.+|..|+.+|..+.. ..
T Consensus 147 ---~~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~---~~ 209 (410)
T TIGR02270 147 ---DPGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS---RL 209 (410)
T ss_pred ---ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC---Hh
Confidence 245688899999999999999999999865 3567888888999999999999999977732 45
Q ss_pred cHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000714 572 TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLR 651 (1335)
Q Consensus 572 ~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~ 651 (1335)
.+..+..+...............++. .....+++.|+.++++.. ++..++.+|+.+...
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~lal--------------~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----- 268 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLAV--------------AGGPDAQAWLRELLQAAA--TRREALRAVGLVGDV----- 268 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHh--------------CCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----
Confidence 55666664444444433333333321 122356888999997744 899999999987644
Q ss_pred HHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHH
Q 000714 652 ESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1335)
Q Consensus 652 ~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~ 686 (1335)
..++.|+..+.+.. ....+..++..++
T Consensus 269 ------~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 269 ------EAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred ------chHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 47888888887544 5666666666665
No 61
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.028 Score=66.77 Aligned_cols=604 Identities=14% Similarity=0.068 Sum_probs=314.7
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHH------
Q 000714 118 SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA------ 191 (1335)
Q Consensus 118 ~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~------ 191 (1335)
+++.+|..|-.-|.+++.+ +- +-.+..|++.+.+.+..+ ..+-.+.-+|.|--..++..+..
T Consensus 17 pD~n~rl~aE~ql~~l~~~----dF-------~qf~~ll~qvl~d~ns~~-~~Rm~agl~LKN~l~a~d~~~~~~~~qrW 84 (858)
T COG5215 17 PDPNARLRAEAQLLELQSG----DF-------EQFISLLVQVLCDLNSND-QLRMVAGLILKNSLHANDPELQKGCSQRW 84 (858)
T ss_pred CCCCccccHHHHHHHhccc----cH-------HHHHHHHHHHHhccCCcH-HHHHHHHHHHhhhhhcCCHHHHHHHHHhh
Confidence 4555555666667777772 21 122445555555554333 34443444555433222222110
Q ss_pred --H---HhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 000714 192 --T---VQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSL 266 (1335)
Q Consensus 192 --i---~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nL 266 (1335)
+ .+...=......|.++.+..-..|+.+++.++.-.- ..-.-.|.++.+++......+...+..+..++++.
T Consensus 85 ~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~El---p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ 161 (858)
T COG5215 85 LGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMEL---PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH 161 (858)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhC---ccccchHHHHHHHHhccccCchHhHHHHHHHHHHH
Confidence 0 001111224566777888877788888877762210 11123567777888887777778999999999998
Q ss_pred ccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhh-c-----CCchhhhhhcccccCCCChhH
Q 000714 267 SDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANIS-G-----GLSNVISSLGQSLESCSSPAQ 340 (1335)
Q Consensus 267 s~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs-~-----g~~~~i~~L~~l~~~~~~~~~ 340 (1335)
+. +..-...+...+.+ |...+..+. +.+++..++-.++.+|.+=. . ..++-..++.+..
T Consensus 162 ce-s~~Pe~li~~sN~i--l~aiv~ga~----k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvv-------- 226 (858)
T COG5215 162 CE-SEAPEDLIQMSNVI--LFAIVMGAL----KNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVV-------- 226 (858)
T ss_pred hh-ccCHHHHHHHhhHH--HHHHHHhhc----ccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheee--------
Confidence 84 32223333344432 223322222 12335778888888887722 1 0011111111000
Q ss_pred HHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHH
Q 000714 341 VADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGL 419 (1335)
Q Consensus 341 i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~l 419 (1335)
+. ...+.+.++|..+..+|..+-. +-+.-....+.-......+.
T Consensus 227 ----------------------------------ce-atq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~ 271 (858)
T COG5215 227 ----------------------------------CE-ATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRF 271 (858)
T ss_pred ----------------------------------eh-hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0122334455555555544311 00111122222223345667
Q ss_pred HcCCCHHHHHHHHHHHHHhhhccCchhHHHh----------------hcccHHHHHHHhcCC-------CHHHHHHHHHH
Q 000714 420 ITMATNEVQEELVRALLKLCNNEGSLWRALQ----------------GREGIQLLISLLGLS-------SEQQQECSVAL 476 (1335)
Q Consensus 420 L~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~----------------~~g~I~~Lv~lL~~~-------~~~v~~~A~~a 476 (1335)
+++.++++...++..+..+|....+..-.+. -++.+|.|+++|... +..+-..|..+
T Consensus 272 mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sC 351 (858)
T COG5215 272 MKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSC 351 (858)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHH
Confidence 7889999999999999888765433211111 134689999999752 22455666666
Q ss_pred HHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc-ChhhHHHHHhcCcHHHHHHHhhcCCHHHHH
Q 000714 477 LCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKE 555 (1335)
Q Consensus 477 L~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~ 555 (1335)
|...+.. ....|++. ++.-+-+-+++++-.-++.++.+++.+-.. ++.++..++ ..++|.+..++.+..--+|.
T Consensus 352 Lqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 352 LQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhh
Confidence 6655521 12233332 222333455666777789999999988754 334444444 45788888888887788899
Q ss_pred HHHHHHHHhhccCC-----CCcHHHHHHH-h--cCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhh--
Q 000714 556 IAAKTLNHLIHKSD-----TATISQLTAL-L--TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-- 625 (1335)
Q Consensus 556 ~Aa~aL~~L~~~~~-----~~~i~~Lv~L-L--~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL-- 625 (1335)
.++|++..++.+.. .+.++..+.- + ..++|..-.++.|..-++.+-........+... .+..+.++.-|
T Consensus 427 ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~ 505 (858)
T COG5215 427 TTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVK 505 (858)
T ss_pred HHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHH
Confidence 99999999876531 1222222211 1 135666777777777766542211110011111 12233333322
Q ss_pred ----cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH-----------hhhcCC----hhHHHHHHHHHHHHH
Q 000714 626 ----SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMK-----------LLDVGS----ECILVEASRCLAAIF 686 (1335)
Q Consensus 626 ----~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~-----------LL~~~~----~~v~~~aa~aL~~L~ 686 (1335)
..++...|..+-++|+.|..-.++.-..+ -+|......+ .+...+ ++.+.+-+..+.++.
T Consensus 506 ~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~-~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aii 584 (858)
T COG5215 506 GTELALNESNLRVSLFSALGTLILICPDAVSDI-LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAII 584 (858)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12345677777788887765544422111 1122111111 121111 223334444444444
Q ss_pred ccChh-hhHHHHHhCCChHHHHHHhcCCCHHHH-HHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHH
Q 000714 687 LSVRE-NREVAAVARDALSPLVVLAGSPVLEVA-EQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAA 764 (1335)
Q Consensus 687 ~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~vk-~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~ 764 (1335)
+-.+. .. -.+...+..+++++.+..+.+. ...-.++.+|+.+-+.+-+......+|-|.+.+...+..+-..|+.
T Consensus 585 r~~~~~ie---~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avg 661 (858)
T COG5215 585 RTRRRDIE---DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVG 661 (858)
T ss_pred HhcCCCcc---cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHH
Confidence 32111 11 1122256677788887655544 5666688888776665555456678888998885544446666666
Q ss_pred HHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCC
Q 000714 765 AIARLLHSRKIDYTITDCVNRAGTVLALVSFLESAS 800 (1335)
Q Consensus 765 aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~ 800 (1335)
-+.++.+....+ +. +-+---+..|+.++.++.
T Consensus 662 lvgdlantl~~d--f~--~y~d~~ms~LvQ~lss~~ 693 (858)
T COG5215 662 LVGDLANTLGTD--FN--IYADVLMSSLVQCLSSEA 693 (858)
T ss_pred HHHHHHHHhhhh--HH--HHHHHHHHHHHHHhcChh
Confidence 666666643222 21 233344556777777765
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.19 E-value=0.00027 Score=84.65 Aligned_cols=181 Identities=12% Similarity=-0.023 Sum_probs=117.4
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
....+.|+.+|++.++.++..++.++... .....+.+..+|++.++.++..|+.+|+.+.. .+
T Consensus 116 ~~a~~~L~~~L~~~~p~vR~aal~al~~r------------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--~~--- 178 (410)
T TIGR02270 116 RQAEPWLEPLLAASEPPGRAIGLAALGAH------------RHDPGPALEAALTHEDALVRAAALRALGELPR--RL--- 178 (410)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHhh------------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--cc---
Confidence 34556677777777777777666555441 12345677788888888888888888888763 22
Q ss_pred HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
.++.|...+.+.++.+|..|++++..+.. ..++..+..+...........++.++... .+
T Consensus 179 ------a~~~L~~al~d~~~~VR~aA~~al~~lG~-----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~---~~ 238 (410)
T TIGR02270 179 ------SESTLRLYLRDSDPEVRFAALEAGLLAGS-----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA---GG 238 (410)
T ss_pred ------chHHHHHHHcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHhccCccHHHHHHHHHHhC---Cc
Confidence 56667777888888888888888866633 12445555533332222333233333332 33
Q ss_pred CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000714 570 TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFE 645 (1335)
Q Consensus 570 ~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~ 645 (1335)
...+..|..++++.. ++..++.+++.+ .....++.|+..+.... +++.|..++..|+-
T Consensus 239 ~~a~~~L~~ll~d~~--vr~~a~~AlG~l--------------g~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 239 PDAQAWLRELLQAAA--TRREALRAVGLV--------------GDVEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred hhHHHHHHHHhcChh--hHHHHHHHHHHc--------------CCcchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 466777777777643 777888888753 33556888898885443 89999999988874
No 63
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.008 Score=74.24 Aligned_cols=356 Identities=16% Similarity=0.136 Sum_probs=188.1
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHh
Q 000714 372 QTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ 450 (1335)
Q Consensus 372 ~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~ 450 (1335)
+-..++++..++ .+|.+|+.++..+-. .|+.... .++....+|.+.+.-|....+..+..+|..+++.-....
T Consensus 145 peVe~Ll~~~~~-~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr 218 (866)
T KOG1062|consen 145 PEVERLLQHRDP-YIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR 218 (866)
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH
Confidence 344556666544 478888888877633 4443322 334445555566666666666666666666544333333
Q ss_pred hcccHHHHHHHhcC---------------CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC------Ch
Q 000714 451 GREGIQLLISLLGL---------------SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG------SA 509 (1335)
Q Consensus 451 ~~g~I~~Lv~lL~~---------------~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~------~~ 509 (1335)
+ .++.||..|+. ++|-+|...+..|+.|...+++..+.+.+ .|-+..++. ..
T Consensus 219 ~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~Gn 291 (866)
T KOG1062|consen 219 D--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNAGN 291 (866)
T ss_pred H--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccchh
Confidence 2 45566665541 24567888888888887665555444432 233333322 12
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcH----HHHHHHhcCCCc
Q 000714 510 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATI----SQLTALLTSDLP 585 (1335)
Q Consensus 510 ~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i----~~Lv~LL~s~~~ 585 (1335)
.+-..++.++..|-. +...|.. ++..|-+.|.+.+.+.|..|...|..+....+ ..+ ..++.-|.+.+.
T Consensus 292 AILYE~V~TI~~I~~-~~~Lrvl-----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~-~avqrHr~tIleCL~DpD~ 364 (866)
T KOG1062|consen 292 AILYECVRTIMDIRS-NSGLRVL-----AINILGKFLLNRDNNIRYVALNMLLRVVQQDP-TAVQRHRSTILECLKDPDV 364 (866)
T ss_pred HHHHHHHHHHHhccC-CchHHHH-----HHHHHHHHhcCCccceeeeehhhHHhhhcCCc-HHHHHHHHHHHHHhcCCcH
Confidence 233344444444422 1222222 34455555555555555555555555543322 222 225556677788
Q ss_pred chHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHHH----------
Q 000714 586 ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKD-LRESS---------- 654 (1335)
Q Consensus 586 ~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~-~~~~l---------- 654 (1335)
.+|..+.+.+..+.+-.+-+. .+..|+++|.+.+++++...+.-+..++..... ++-.+
T Consensus 365 SIkrralELs~~lvn~~Nv~~----------mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~a 434 (866)
T KOG1062|consen 365 SIKRRALELSYALVNESNVRV----------MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTA 434 (866)
T ss_pred HHHHHHHHHHHHHhccccHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc
Confidence 888888887776544333222 367788899888999999999888888754322 22111
Q ss_pred ---HhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh--
Q 000714 655 ---IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI-- 729 (1335)
Q Consensus 655 ---~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~-- 729 (1335)
+...++..++.++.+..++....+...+..-...+ .++..+++.....+.|++.-..
T Consensus 435 G~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~------------------~~~~is~e~l~qVa~W~IGEYGdl 496 (866)
T KOG1062|consen 435 GDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSED------------------TLLDISQEPLLQVASWCIGEYGDL 496 (866)
T ss_pred ccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhh------------------hhhhhhhhhHHHHHHHHhhhhhHH
Confidence 11122344444443332221211111111111000 0111233334566777777533
Q ss_pred -CCc---hHHHHHHHCCChHHHHHHhhcCChh--hHHHHHHHHHHHhhcCCC
Q 000714 730 -LDS---EVSEKAIAEEIILPATRVLCEGTIS--GKTLAAAAIARLLHSRKI 775 (1335)
Q Consensus 730 -~~~---~~~~~~~~~g~v~~L~~ll~~~~~~--~k~~A~~aL~~Ll~~~~~ 775 (1335)
.+. +.-.++-+..++..|.+++..++.. .|..|..||..|-..+..
T Consensus 497 ll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s 548 (866)
T KOG1062|consen 497 LLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS 548 (866)
T ss_pred hhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc
Confidence 222 1112233566777788888776666 788888888888765443
No 64
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.15 E-value=0.00011 Score=84.01 Aligned_cols=272 Identities=15% Similarity=0.121 Sum_probs=178.1
Q ss_pred hHHHhhcccHHHHHHHhcCCCHH--HHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhcc-CChHHHHHHHHHHHHH
Q 000714 446 WRALQGREGIQLLISLLGLSSEQ--QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNL 522 (1335)
Q Consensus 446 ~~~i~~~g~I~~Lv~lL~~~~~~--v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~-~~~~v~~~Aa~aL~nL 522 (1335)
+..|+..|+...|+.++..++-+ ++-.|...|-.+.. .+++..+++-| ...++.+-+. ..++.+...+.+|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 34577789999999999988654 58889999988873 67888888876 4445554443 3678888999999999
Q ss_pred hccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhc
Q 000714 523 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVV 602 (1335)
Q Consensus 523 ~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~ 602 (1335)
..|+++....++..|++.+++--.+..+|..-++++-+|.|.+-+.. .
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~---------------~----------------- 297 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGG---------------Q----------------- 297 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhch---------------h-----------------
Confidence 99999999999999999999888888889999999999988754321 0
Q ss_pred CchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHH
Q 000714 603 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 682 (1335)
Q Consensus 603 ~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL 682 (1335)
.++..+.+..+-..|..+-.+.++.++..|+.+++-|+.+ ++.-..+.+.|.+...--++..-++.....
T Consensus 298 ----a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----- 367 (832)
T KOG3678|consen 298 ----AVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN-KEVEREVRKSGTLALVEPLVASLDPGRFAR----- 367 (832)
T ss_pred ----HHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh-hhhhHHHhhccchhhhhhhhhccCcchhhh-----
Confidence 1122334444556666677778889999999999999988 776666666665433333333333321111
Q ss_pred HHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh--CCc-hHHHHHHHCCChHHHHHHhhcCChhhH
Q 000714 683 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI--LDS-EVSEKAIAEEIILPATRVLCEGTISGK 759 (1335)
Q Consensus 683 ~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~--~~~-~~~~~~~~~g~v~~L~~ll~~~~~~~k 759 (1335)
+. .....-...++++.|+.+|.+...+.+.-++.-|+.=+ .+. .....+-+-|++.+|-++..+.+....
T Consensus 368 ------D~-hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaa 440 (832)
T KOG3678|consen 368 ------DA-HDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAA 440 (832)
T ss_pred ------hh-hhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHH
Confidence 00 00011234567888888888776666655555443321 111 111223344666666666553333334
Q ss_pred HHHHHHHHHH
Q 000714 760 TLAAAAIARL 769 (1335)
Q Consensus 760 ~~A~~aL~~L 769 (1335)
.-|.+||--+
T Consensus 441 kfAseALtvi 450 (832)
T KOG3678|consen 441 KFASEALTVI 450 (832)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.14 E-value=0.0049 Score=73.33 Aligned_cols=323 Identities=12% Similarity=0.096 Sum_probs=195.4
Q ss_pred hhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchh---hhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCch
Q 000714 369 IVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLS---IKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSL 445 (1335)
Q Consensus 369 ~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~ 445 (1335)
.+++...++|++.++ .+|.+++...+.++.--..+ +.+..-| ..|.+-|....+++.-..+.+++.+...++-.
T Consensus 604 ~ivStiL~~L~~k~p-~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPP-DVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc
Confidence 467777788887766 48999988887774321111 1111111 23566677778888888888887776554321
Q ss_pred --hHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHh---HHHHHhcCCHHHHHHhhccCChHHHHHHHHHHH
Q 000714 446 --WRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---KWAITAAGGIPPLVQILESGSAKAKEDSASILR 520 (1335)
Q Consensus 446 --~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~---r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~ 520 (1335)
+..+ .|.+|.|..+|++.+.+++.+....+..++...++. |+.+. .--.|++.|++.+.++|.+|...++
T Consensus 681 ~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 681 SMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 1123 477899999999999999999999999998766663 33332 2345888999999999999999999
Q ss_pred HHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC-CCcHHHHHHHhcCCCcchHHHHHHHHHHhh
Q 000714 521 NLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-TATISQLTALLTSDLPESKVYVLDALKSML 599 (1335)
Q Consensus 521 nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~-~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~ 599 (1335)
-+++. |--+..+..|+.-|+...-..|....-++.-.+.... -.+++.|+.--+.....+|..+..+++.+.
T Consensus 756 ~Is~a-------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 756 CISRA-------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred hHHhh-------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 88764 0002233444444444333333222223333332222 245566665555556667777777766532
Q ss_pred hhcCchHHHHHhhhh--cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh-------hcC
Q 000714 600 SVVSFSDILREGSAA--NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL-------DVG 670 (1335)
Q Consensus 600 ~~~~~~~~~~~~i~~--~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL-------~~~ 670 (1335)
. .+.+...+ +...|.|.+-|.+.++.-+..|...+.+|+.+.+ ..|.....+.|| -..
T Consensus 829 e------yig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~-------gtg~eda~IHLlNllwpNIle~ 895 (975)
T COG5181 829 E------YIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP-------GTGDEDAAIHLLNLLWPNILEP 895 (975)
T ss_pred H------HHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC-------CcccHHHHHHHHHHhhhhccCC
Confidence 2 11111111 2345666678888999999999999999998733 234444444443 235
Q ss_pred ChhHHHHHHHHHHHHHccChhhhHHHHHhCCCh-HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 671 SECILVEASRCLAAIFLSVRENREVAAVARDAL-SPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 671 ~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i-~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
++.++..--.++.++. ..+..|.+ ..+.+-|-+++..|+. +-|...|.+
T Consensus 896 sPhvi~~~~Eg~e~~~---------~~lg~g~~m~Yv~qGLFHPs~~VRk-~ywtvyn~m 945 (975)
T COG5181 896 SPHVIQSFDEGMESFA---------TVLGSGAMMKYVQQGLFHPSSTVRK-RYWTVYNIM 945 (975)
T ss_pred CcHHHHHHHHHHHHHH---------HHhccHHHHHHHHHhccCchHHHHH-HHHHHHhhh
Confidence 5655555444554443 23334433 4555777777777754 455556554
No 66
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0038 Score=76.49 Aligned_cols=422 Identities=18% Similarity=0.139 Sum_probs=224.9
Q ss_pred CCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHH
Q 000714 34 SSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLG 113 (1335)
Q Consensus 34 ~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~ 113 (1335)
..+.+|.+|++.+..+.-.++++- ..+|..|...-+.+.++|.-.--+|...+.+.++ +..-.|..+-+
T Consensus 47 nkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpd----LALLSIntfQk 115 (968)
T KOG1060|consen 47 NKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPD----LALLSINTFQK 115 (968)
T ss_pred cccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCC----ceeeeHHHHHh
Confidence 345789999999999865444433 3557788888888888888888888888755432 11124666777
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhh-cCCCChhhHHHHHHHHHHHhhcCChhhHHHH
Q 000714 114 LLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLK-NGLKSGNVVDNLLTGALRNLSTSTEGFWAAT 192 (1335)
Q Consensus 114 lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~-~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i 192 (1335)
-|+++++.+|..|+++|..+-. . -..|..+--++ ...+..+.++..++.|+-.|.+-.+....++
T Consensus 116 ~L~DpN~LiRasALRvlSsIRv----p----------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL 181 (968)
T KOG1060|consen 116 ALKDPNQLIRASALRVLSSIRV----P----------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL 181 (968)
T ss_pred hhcCCcHHHHHHHHHHHHhcch----h----------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence 7777777777655544433222 0 01111111111 1122233455555555555554333322222
Q ss_pred Hh--------------------------------cCCHHHHHHHhccCChhHHHHHHHHHHHHhhc---Ccch-------
Q 000714 193 VQ--------------------------------AGGIDILVKLLTLGQSSTQAHVCFLLACMMEE---DVSV------- 230 (1335)
Q Consensus 193 ~~--------------------------------~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~---~~~~------- 230 (1335)
.+ ++-...|+.+|.+-+.=-|......|.+-+.. ++..
T Consensus 182 ~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~ 261 (968)
T KOG1060|consen 182 EEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLED 261 (968)
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcccccccccc
Confidence 11 12222333333322222222223333222200 0000
Q ss_pred -h-------------hhHhccccHHHHH----HHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcC
Q 000714 231 -C-------------SRVLAADATKQLL----KLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIA 292 (1335)
Q Consensus 231 -~-------------~~i~~~g~i~~Lv----~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~ 292 (1335)
. .-+...-=+..|+ .+|.+.+. .+...++.++++++..+ ++ .+.+++|+++|++
T Consensus 262 n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~-sVVmA~aql~y~lAP~~-~~------~~i~kaLvrLLrs 333 (968)
T KOG1060|consen 262 NGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP-SVVMAVAQLFYHLAPKN-QV------TKIAKALVRLLRS 333 (968)
T ss_pred CcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc-HHHHHHHhHHHhhCCHH-HH------HHHHHHHHHHHhc
Confidence 0 0000001112222 35566666 89999999999999532 22 2247889999988
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHH
Q 000714 293 PSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQ 372 (1335)
Q Consensus 293 ~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~ 372 (1335)
+ ..+|+-.++.+.-++.-.++ -+.+
T Consensus 334 ~----------~~vqyvvL~nIa~~s~~~~~---------------------------------------------lF~P 358 (968)
T KOG1060|consen 334 N----------REVQYVVLQNIATISIKRPT---------------------------------------------LFEP 358 (968)
T ss_pred C----------CcchhhhHHHHHHHHhcchh---------------------------------------------hhhh
Confidence 5 34555555555555542111 1122
Q ss_pred HHHHhh-CCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhh
Q 000714 373 TLVNQF-KPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 451 (1335)
Q Consensus 373 ~Lv~LL-~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~ 451 (1335)
-+..++ .+.++..++-+-++.|.+|+....+.. .++.+-...++.+.++-..++.+|...+...... .
T Consensus 359 ~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~------ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-----~ 427 (968)
T KOG1060|consen 359 HLKSFFVRSSDPTQVKILKLEILSNLANESNISE------ILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-----T 427 (968)
T ss_pred hhhceEeecCCHHHHHHHHHHHHHHHhhhccHHH------HHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-----h
Confidence 222222 233334455566677777765443322 2344555566777666667777776655443221 2
Q ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhH
Q 000714 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIR 530 (1335)
Q Consensus 452 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r 530 (1335)
..++.-|+.+|++++..+...++..+..|-..++..-. ..|..|.+++.+- -+..|...+|.++..+..-+...
T Consensus 428 ~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~ 502 (968)
T KOG1060|consen 428 DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIA 502 (968)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhc
Confidence 35688899999999999999999999998754443211 1345666666543 24445555666666554322222
Q ss_pred HHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 000714 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1335)
Q Consensus 531 ~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L 564 (1335)
...+..+.+-+.+..+.+|-+....-.+|
T Consensus 503 -----PDVLR~laksFs~E~~evKlQILnL~aKL 531 (968)
T KOG1060|consen 503 -----PDVLRKLAKSFSDEGDEVKLQILNLSAKL 531 (968)
T ss_pred -----hHHHHHHHHhhccccchhhHHHHHhhhhh
Confidence 33455666666667777766555544444
No 67
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=0.0011 Score=76.26 Aligned_cols=348 Identities=14% Similarity=0.098 Sum_probs=220.5
Q ss_pred CCcHHHHHHHhccC-CHHHHHHHHHHHHHhhcCchhHHHHHh-------cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 000714 64 SQAVPVLVSLLRSG-SLAVKIQAATVLGSLCKENELRVKVLL-------GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~-~~~vk~~aa~~L~~L~~~~~~~~~i~~-------~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
+..+.+++.++... .++........+..+-.++..+..++. .-.-++.+.+|...+.-....+...+..++.
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 46678899999754 446777788888887666665655442 1237889999998888777767778887777
Q ss_pred cCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhcc--CChhHH
Q 000714 136 GGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTL--GQSSTQ 213 (1335)
Q Consensus 136 ~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s--~~~~v~ 213 (1335)
.+...-.+...-+. ...|-.++++.+..+ ....+.++|..+.. .+.++..++.+.|+..++..+.+ .+-.+|
T Consensus 144 ~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 144 FGNCKMELSELDVY---KGFLKEQLQSSTNND--YIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred hccccccchHHHHH---HHHHHHHHhccCCCc--hHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHH
Confidence 43211111011111 224556666643332 23357788888874 45677778889999999999953 345778
Q ss_pred HHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCH------HHHHHHHHCCChHHHH
Q 000714 214 AHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCK------DARREIAGSNGIPAMI 287 (1335)
Q Consensus 214 ~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~------e~r~~i~~~Ggi~~Lv 287 (1335)
-+...++|.|... +.....+...+.|+.|..+++......+-+.+..++.|+....+ +....++..+..+.+-
T Consensus 218 YqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~ 296 (442)
T KOG2759|consen 218 YQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQ 296 (442)
T ss_pred HHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHH
Confidence 8899999977644 44666777789999999999987767888999999999997663 4556777877777665
Q ss_pred HHhcCCCccchhhhhHHHHHHHHH---HHH----HHhhcCCchhhh-hhcccccCCCChhHHHhHhhhhHHHHHhhcccc
Q 000714 288 NATIAPSKEFMQGEYAQALQENAM---CAL----ANISGGLSNVIS-SLGQSLESCSSPAQVADTLGALASALMIYDSKA 359 (1335)
Q Consensus 288 ~lL~~~~~e~~~~~~d~~v~~~A~---~aL----~nLs~g~~~~i~-~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~ 359 (1335)
.+-...-. |..+...-- .-| ..||.-+.+.-. ..|.+.-+|..+..- .|+.
T Consensus 297 ~L~~rkys-------DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~------------FW~e-- 355 (442)
T KOG2759|consen 297 SLEERKYS-------DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK------------FWRE-- 355 (442)
T ss_pred HHHhcCCC-------cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc------------hHHH--
Confidence 55443321 233322111 111 112210000000 111222222211100 0110
Q ss_pred cCCCCC--CchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhC-CcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHH
Q 000714 360 ESTKPS--DPLIVEQTLVNQFKPRLPFLVQERTIEALASLYG-NPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALL 436 (1335)
Q Consensus 360 ~s~~~~--~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~ 436 (1335)
....+ +.-.+..+|+++|+...+..+-.-|..-++...+ .|+.+..+..-|+-..+++++.+.+++|+.+|+.++.
T Consensus 356 -Na~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ 434 (442)
T KOG2759|consen 356 -NADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQ 434 (442)
T ss_pred -hHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHH
Confidence 00112 2234688899999987755444445555555544 6788888999999999999999999999999999988
Q ss_pred Hhhh
Q 000714 437 KLCN 440 (1335)
Q Consensus 437 ~Ls~ 440 (1335)
.|-.
T Consensus 435 ~lm~ 438 (442)
T KOG2759|consen 435 KLMV 438 (442)
T ss_pred HHHh
Confidence 7654
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.08 E-value=0.00035 Score=80.38 Aligned_cols=300 Identities=17% Similarity=0.155 Sum_probs=193.2
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccc-cHHHHHHHHcC-CCHHHHHHHHHHHHHhhhccCchhHHH
Q 000714 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSE-AKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRAL 449 (1335)
Q Consensus 372 ~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g-~i~~Lv~lL~~-~~~~v~~~A~~aL~~Ls~~~~~~~~~i 449 (1335)
..++.++.....+ ..+.....++.++..........+.. ....|-..+.+ .+++....+++||..+...+ +++-.+
T Consensus 117 ~~fl~ll~r~d~~-iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~ 194 (442)
T KOG2759|consen 117 LSFLNLLNRQDTF-IVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAF 194 (442)
T ss_pred HHHHHHHhcCChH-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhhee
Confidence 3455666665554 33446677777766554433332222 23345555555 56677888999999988765 567778
Q ss_pred hhcccHHHHHHHhcC--CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccC
Q 000714 450 QGREGIQLLISLLGL--SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHS 526 (1335)
Q Consensus 450 ~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~ 526 (1335)
+.+.|+..++..+.+ .+-.+|.....+++.|+ .++...+.+...+.|+.|.+++++. ..++-.-++.++.|+....
T Consensus 195 v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt-Fn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~ 273 (442)
T KOG2759|consen 195 VIADGVSLLIRILASTKCGFQLQYQSIFCIWLLT-FNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG 273 (442)
T ss_pred eecCcchhhHHHHhccCcchhHHHHHHHHHHHhh-cCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 889999999998842 35689999999999999 4688778888889999999999876 4567778889999998754
Q ss_pred h------hhHHHHHhcCcHHHHHHHhhcC---CHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHH
Q 000714 527 E------DIRACVESADAVPALLWLLKNG---SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKS 597 (1335)
Q Consensus 527 ~------~~r~~i~~~g~i~~Lv~LL~~~---~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~ 597 (1335)
+ +....++..++.+ -++.|... +++.....-..-..|-. .+.. |.+- -+|..+....
T Consensus 274 ~~~~~~k~~~~~mv~~~v~k-~l~~L~~rkysDEDL~~di~~L~e~L~~-----svq~----LsSF----DeY~sEl~sG 339 (442)
T KOG2759|consen 274 PDRETKKDIASQMVLCKVLK-TLQSLEERKYSDEDLVDDIEFLTEKLKN-----SVQD----LSSF----DEYKSELRSG 339 (442)
T ss_pred chhhHHHHHHHHHHhcCchH-HHHHHHhcCCCcHHHHHHHHHHHHHHHH-----HHHh----hccH----HHHHHHHHhC
Confidence 2 3334455555444 44555442 22222111111111100 0000 0000 0111111111
Q ss_pred hhhhcC---chHHHHHh-----hhhcchHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh
Q 000714 598 MLSVVS---FSDILREG-----SAANDAVETMIKILSST-KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 668 (1335)
Q Consensus 598 L~~~~~---~~~~~~~~-----i~~~~~i~~Lv~LL~s~-~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~ 668 (1335)
.+.-.+ ..+.-++. =.....+..|+++|.++ ++.+...|+.=++...+..|+.+..+.+-|+-..+++++.
T Consensus 340 ~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln 419 (442)
T KOG2759|consen 340 RLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN 419 (442)
T ss_pred CcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence 111000 00011111 12345789999999765 5888999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHcc
Q 000714 669 VGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 669 ~~~~~v~~~aa~aL~~L~~~ 688 (1335)
++++++.-+|..|+-.+..+
T Consensus 420 h~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 420 HEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred CCCchHHHHHHHHHHHHHhh
Confidence 99999999999999887754
No 69
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.07 E-value=0.00015 Score=84.81 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=143.7
Q ss_pred cHHHHHHHHcC--CCHHHHHHHHHHHHHhhhccCchhHHHhhc------ccHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 000714 412 AKRLLVGLITM--ATNEVQEELVRALLKLCNNEGSLWRALQGR------EGIQLLISLLGLSSEQQQECSVALLCLLSNE 483 (1335)
Q Consensus 412 ~i~~Lv~lL~~--~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~------g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~ 483 (1335)
....++.+|+. +++++.++....+..+...++...+.+.+. ....+++.++..++.-++..|+..|..|...
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 44555666643 578899999999999998888766655541 2478888999999999999999999999765
Q ss_pred ChHhHHHHHhcCCHHHHHHhhccC----ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh-----cC--CHH
Q 000714 484 NDDSKWAITAAGGIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK-----NG--SAN 552 (1335)
Q Consensus 484 ~~~~r~~i~~~g~I~~Lv~LL~~~----~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~-----~~--~~~ 552 (1335)
.+....... .+.++.+++.+++. +.+.+..++.+|.+|.+ .+++|..+.+.|+++.|..+++ ++ ..+
T Consensus 136 ~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 136 GPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred CCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 444322211 45678888887763 45667899999999998 4999999999999999999992 22 233
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcC-CCHH
Q 000714 553 GKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEE 631 (1335)
Q Consensus 553 ~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s-~~~~ 631 (1335)
.+.++.-++|-|+... ...+.+...+.++.|+++++. ..++
T Consensus 214 l~Y~~ll~lWlLSF~~--------------------------------------~~~~~~~~~~~i~~L~~i~~~~~KEK 255 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEP--------------------------------------EIAEELNKKYLIPLLADILKDSIKEK 255 (312)
T ss_dssp HHHHHHHHHHHHTTSH--------------------------------------HHHHHHHTTSHHHHHHHHHHH--SHH
T ss_pred HHHHHHHHHHHHhcCH--------------------------------------HHHHHHhccchHHHHHHHHHhcccch
Confidence 4566777777775522 111223334579999999864 6899
Q ss_pred HHHHHHHHHHHHhcCChh-hHHHHHhcCChHHHHHhh
Q 000714 632 TQAKSASALAGIFETRKD-LRESSIAVKTLWSVMKLL 667 (1335)
Q Consensus 632 v~~~Aa~aL~nL~~~~~~-~~~~l~~~g~v~~Lv~LL 667 (1335)
+.+-+..++.|+....++ +...++..|+.+.+-.+.
T Consensus 256 vvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~ 292 (312)
T PF03224_consen 256 VVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLS 292 (312)
T ss_dssp HHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHh
Confidence 999999999999987554 555666665555554444
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=98.06 E-value=0.0095 Score=74.45 Aligned_cols=414 Identities=15% Similarity=0.071 Sum_probs=235.2
Q ss_pred ccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHH---HHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHH
Q 000714 238 DATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKD---ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCAL 314 (1335)
Q Consensus 238 g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e---~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL 314 (1335)
..++..+++|+..+| +.|-.+.-.+.++...++. .++.+.++=|.+.|-++|+++..+.. ......+.-|+..|
T Consensus 5 ~~l~~c~~lL~~~~D-~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~--~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSADD-TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSD--CPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCCc-HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCC--CCHHHHHHHHHHHH
Confidence 346778899998886 8888888888888875553 45568899899999999999763221 13467888888888
Q ss_pred HHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHH
Q 000714 315 ANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEAL 394 (1335)
Q Consensus 315 ~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL 394 (1335)
..+|.. +.+ ..++ +. ..-+|.|+..+...++..+...+.+.|
T Consensus 82 ~~f~~~-~~~-------a~~~-------~~-----------------------~~~IP~Lle~l~~~s~~~~v~dalqcL 123 (543)
T PF05536_consen 82 AAFCRD-PEL-------ASSP-------QM-----------------------VSRIPLLLEILSSSSDLETVDDALQCL 123 (543)
T ss_pred HHHcCC-hhh-------hcCH-------HH-----------------------HHHHHHHHHHHHcCCchhHHHHHHHHH
Confidence 888761 100 0000 00 123677777777776656788899999
Q ss_pred HHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhc----ccHHHHHHHhcCCCHHHH
Q 000714 395 ASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGR----EGIQLLISLLGLSSEQQQ 470 (1335)
Q Consensus 395 ~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~----g~I~~Lv~lL~~~~~~v~ 470 (1335)
..++.+++.++.+.+.|+++.|.+.+.+ .+..++.+...|.+++...+...+. ... ..++.+-...+......+
T Consensus 124 ~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~k 201 (543)
T PF05536_consen 124 LAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDK 201 (543)
T ss_pred HHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchH
Confidence 9999999999999999999999999877 6677899999999987765421111 111 223444445555556667
Q ss_pred HHHHHHHHHhccCChHh-HHHHHhcC----CHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcC-----cH
Q 000714 471 ECSVALLCLLSNENDDS-KWAITAAG----GIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESAD-----AV 539 (1335)
Q Consensus 471 ~~A~~aL~nLs~~~~~~-r~~i~~~g----~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g-----~i 539 (1335)
...+..|..+-...+.. ........ ....+..+|++. .+..|..+......|... -...-.+.... ..
T Consensus 202 fell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~-~G~~wl~~~~~~~~~~F~ 280 (543)
T PF05536_consen 202 FELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDL-LGPEWLFADDKKSGKKFL 280 (543)
T ss_pred HHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hChHhhcCCCCCCcccHH
Confidence 77788887775433210 11111112 233444556655 556666666555555542 10000111111 11
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHH
Q 000714 540 PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 619 (1335)
Q Consensus 540 ~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~ 619 (1335)
-.++++..- + ....|-.|.. ..+.+........|. .....++
T Consensus 281 ~Llv~l~~V---E----ir~~L~~L~~---------------~~~~~~~~~~~~~L~----------------~cf~ilE 322 (543)
T PF05536_consen 281 LLLVNLACV---E----IRMSLEELLE---------------QLNPEEYPEKQRLLA----------------SCFSILE 322 (543)
T ss_pred HHHHHHHHH---H----HHHHhHHhhh---------------cCCchhhHHHHHHHH----------------HHHHHHH
Confidence 111111111 0 1111111111 111111001111111 1122344
Q ss_pred HHHHhhcC----C----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhc------CChhHHHHHHHHHHHH
Q 000714 620 TMIKILSS----T----KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV------GSECILVEASRCLAAI 685 (1335)
Q Consensus 620 ~Lv~LL~s----~----~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~------~~~~v~~~aa~aL~~L 685 (1335)
.++.++.. . +++...+.-..|. +.+...+++|++ .++.....+.+++..-
T Consensus 323 ~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~----------------e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~W 386 (543)
T PF05536_consen 323 HFIGYLVRSLEEESLDLDPDTLLKLRTSLS----------------ETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAW 386 (543)
T ss_pred HHHHHHHhccccccCCCCHHHHHHHHHHHH----------------HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 44444422 1 1222222222221 122333334422 1222566778888888
Q ss_pred HccChhhhHHHHHhCCChHHHHHHhcCCCHH----------HHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHh
Q 000714 686 FLSVRENREVAAVARDALSPLVVLAGSPVLE----------VAEQATCALANLILDSEVSEKAIAEEIILPATRVL 751 (1335)
Q Consensus 686 ~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----------vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll 751 (1335)
+.+++..-|..+ .+.+|.++++.+.+..+ ....-.=+|+.+...++.++.++..|+-..|.+.+
T Consensus 387 LaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~~g~~~l~~~l 460 (543)
T PF05536_consen 387 LAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSNGGWKLLCDDL 460 (543)
T ss_pred HHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhCCcHHHHHHHH
Confidence 888776544233 47889999998875544 22333337778888999999999999988888754
No 71
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.03 E-value=0.00028 Score=80.82 Aligned_cols=262 Identities=15% Similarity=0.132 Sum_probs=176.8
Q ss_pred hhhhcccccHHHHHHHHcCCCH--HHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHh
Q 000714 404 SIKLENSEAKRLLVGLITMATN--EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLL 480 (1335)
Q Consensus 404 ~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nL 480 (1335)
+..|...|++..|++++...+. +++..+.+.|..+.... ++..+..-| ...++.+.+. ...+.+...++.|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~ae--N~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAE--NRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhh--hhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4567778999999999988765 45889999998765442 244455433 5555555553 3568889999999999
Q ss_pred ccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc-ChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHH
Q 000714 481 SNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAK 559 (1335)
Q Consensus 481 s~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~ 559 (1335)
-.|+++.+..++++|++..++-..+..+|.+..+|+-+|+|++-+ ....+..+++..+-+-|.-+..+.+.-.+-+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876 3456677777777777887777777778999999
Q ss_pred HHHHhhccCC-------CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHH
Q 000714 560 TLNHLIHKSD-------TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEET 632 (1335)
Q Consensus 560 aL~~L~~~~~-------~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v 632 (1335)
+.+-++...+ ++++.-.-.++.+.+|..-.. . ..+..+ + ...+-+..|+.+|.++--+.
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR--D----------~hd~aQ-G-~~~d~LqRLvPlLdS~R~EA 395 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFAR--D----------AHDYAQ-G-RGPDDLQRLVPLLDSNRLEA 395 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhh--h----------hhhhhc-c-CChHHHHHhhhhhhcchhhh
Confidence 9988876553 233322223344444432100 0 001111 1 12345888999998776666
Q ss_pred HHHHHHHHHHHhc--CChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHH
Q 000714 633 QAKSASALAGIFE--TRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 682 (1335)
Q Consensus 633 ~~~Aa~aL~nL~~--~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL 682 (1335)
|..++.-++.=+. .-....+.+-+-|+|..|-++..+.+.....-+-.++
T Consensus 396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseAL 447 (832)
T KOG3678|consen 396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEAL 447 (832)
T ss_pred hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 6555554432211 1011233456778888888888765554333344444
No 72
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.94 E-value=0.04 Score=65.97 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=193.7
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCc--hhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhH-
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGS--LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK- 488 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r- 488 (1335)
.+..++.+|++.++.++.+|+.....|+..-.. ..+.+.+.|. .|.+-|....+++.-....+++.+.+. ...+
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv-~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSV-HRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhh-hcccc
Confidence 456678899999999999998877776432111 1223333333 356677778888887777777777532 2111
Q ss_pred HHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhh---HHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 000714 489 WAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDI---RACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1335)
Q Consensus 489 ~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~---r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~ 565 (1335)
.+---.|.+|.|.-+|++.+.+++.+....++.++..++++ |+.+. .---|+++|++.+.+.|+.|..++..++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 11112578999999999999999999999999999877763 33332 2346789999999999999999999987
Q ss_pred ccCCCCcHHHHHHHhcC-CCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000714 566 HKSDTATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 644 (1335)
Q Consensus 566 ~~~~~~~i~~Lv~LL~s-~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~ 644 (1335)
..-.+.. .|..||.. ...+-+..++.+++. . .+.+.-.....+|.|+.=-+.++..+|.-...+++.++
T Consensus 759 ~aiGPqd--vL~~LlnnLkvqeRq~RvctsvaI-~-------iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 759 RAIGPQD--VLDILLNNLKVQERQQRVCTSVAI-S-------IVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred hhcCHHH--HHHHHHhcchHHHHHhhhhhhhhh-h-------hhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 6543221 23333332 122333344443331 0 11121222345777776666778889999999999988
Q ss_pred cCChhh-HHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHH-HHHhCCChHHHHHHhcCCCHHHH---H
Q 000714 645 ETRKDL-RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREV-AAVARDALSPLVVLAGSPVLEVA---E 719 (1335)
Q Consensus 645 ~~~~~~-~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~vk---~ 719 (1335)
....+. ++.+ --..|-|-..|.+.++.-..-++..+..+....+..... +++. .+..|..=+-++++.+. .
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~~~~ 904 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQSFD 904 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHHHHH
Confidence 653321 1111 123455556677777766666777777776654432111 0110 11122221223555544 3
Q ss_pred HHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhhcC
Q 000714 720 QATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLHSR 773 (1335)
Q Consensus 720 ~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~~ 773 (1335)
++..++++-.. +.....++ ..-+...+. .-+++-|...+....+
T Consensus 905 Eg~e~~~~~lg-~g~~m~Yv--------~qGLFHPs~-~VRk~ywtvyn~myv~ 948 (975)
T COG5181 905 EGMESFATVLG-SGAMMKYV--------QQGLFHPSS-TVRKRYWTVYNIMYVF 948 (975)
T ss_pred HHHHHHHHHhc-cHHHHHHH--------HHhccCchH-HHHHHHHHHHhhhhhc
Confidence 34444444332 33333342 222222222 3467778888877654
No 73
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.89 E-value=0.0015 Score=77.25 Aligned_cols=214 Identities=21% Similarity=0.251 Sum_probs=159.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHH
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~ 532 (1335)
..++.+++++.+.+..++..+...+..+.. .+ +++.+..++.+.++.+|..|+.+|+++-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--~~---------av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS--EE---------AVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--HH---------HHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 568888999998888999999988777763 33 78899999999999999999998888754
Q ss_pred HHhcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCc------------chHHHHHHHHHHhh
Q 000714 533 VESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP------------ESKVYVLDALKSML 599 (1335)
Q Consensus 533 i~~~g~i~~Lv~LL~-~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~------------~~k~~a~~aL~~L~ 599 (1335)
...++.|+.++. +++..+|..++++|..+-. ...+.+++..+.+... .++..+...++.
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~---~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~-- 175 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD---ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE-- 175 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH--
Confidence 246888999888 4888899999999988843 3457778887776552 133334444332
Q ss_pred hhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHH
Q 000714 600 SVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEAS 679 (1335)
Q Consensus 600 ~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa 679 (1335)
+.....++.+.+++.+.+..++..++.+|+.+.... ....+.+...+.+.+..+...++
T Consensus 176 ------------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 176 ------------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred ------------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 234556889999999999999999999999998663 23557777888888888888877
Q ss_pred HHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHH
Q 000714 680 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALA 726 (1335)
Q Consensus 680 ~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~ 726 (1335)
.++..+- ....++.++..+...+..++..+..++.
T Consensus 235 ~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 235 LALGEIG------------DEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHhcccC------------cchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 6665432 2345667778888877777766555554
No 74
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=0.015 Score=74.06 Aligned_cols=567 Identities=14% Similarity=0.112 Sum_probs=317.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhc-CchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhh
Q 000714 71 VSLLRSGSLAVKIQAATVLGSLCK-ENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST 149 (1335)
Q Consensus 71 v~lL~s~~~~vk~~aa~~L~~L~~-~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~ 149 (1335)
+.-++..+-.-+.+..+-+.+++. ..+.+. ..-.+|.+-... ....++...++.-+..+.. +..+.. +.
T Consensus 88 ~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~----~v~~~~--~~ 157 (759)
T KOG0211|consen 88 IDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLP----DVGGPE--YA 157 (759)
T ss_pred hhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccch----hccchh--HH
Confidence 333333333445555555555541 111111 223466666666 5666777777776666655 222111 11
Q ss_pred cCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-ChhHHHHHHHHHHHHhhcCc
Q 000714 150 EGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-QSSTQAHVCFLLACMMEEDV 228 (1335)
Q Consensus 150 ~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~-~~~v~~~aa~~L~~La~~~~ 228 (1335)
.-..|++-.+... . ...+++.+...+...+...+.... ..- +-+++..+..+ -...+..++.+++......+
T Consensus 158 ~~ll~~le~l~~~-e--et~vr~k~ve~l~~v~~~~~~~~~---~~~-lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~ 230 (759)
T KOG0211|consen 158 HMLLPPLELLATV-E--ETGVREKAVESLLKVAVGLPKEKL---REH-LVPLLKRLATGDWFQSRLSACGLFGKLYVSLP 230 (759)
T ss_pred HHhhHHHHhhhHH-H--HHHHHHHHHHHHHHHHHhcChHHH---HHH-HHHHHHHccchhhhhcchhhhhhhHHhccCCC
Confidence 1122333333222 1 223555566666555432221111 111 12233333322 22345667777765542211
Q ss_pred chhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHH
Q 000714 229 SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQE 308 (1335)
Q Consensus 229 ~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~ 308 (1335)
...++... .+..+-+-......+|..++.-+++++. .........+.++.+..+..+. .+.+++
T Consensus 231 ---~~~vk~el-r~~~~~lc~d~~~~Vr~~~a~~l~~~a~---~~~~~~~~s~v~~~~~~L~~Dd---------qdsVr~ 294 (759)
T KOG0211|consen 231 ---DDAVKREL-RPIVQSLCQDDTPMVRRAVASNLGNIAK---VLESEIVKSEVLPTLIQLLRDD---------QDSVRE 294 (759)
T ss_pred ---hHHHHHHH-HHHHHhhccccchhhHHHHHhhhHHHHH---HHHHHHHHhhccHHHhhhhhcc---------hhhHHH
Confidence 11222222 3444444444455899999999999885 3344788889999999988764 277888
Q ss_pred HHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHH
Q 000714 309 NAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQE 388 (1335)
Q Consensus 309 ~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~ 388 (1335)
.|...+.++.. +++.+.. . ...+.+.++...+.+.. -++.
T Consensus 295 ~a~~~~~~l~~-----------l~~~~~d---~-------------------------~~~~~~~l~~~~~d~~~-~v~~ 334 (759)
T KOG0211|consen 295 AAVESLVSLLD-----------LLDDDDD---V-------------------------VKSLTESLVQAVEDGSW-RVSY 334 (759)
T ss_pred HHHHHHHHHHH-----------hcCCchh---h-------------------------hhhhhHHHHHHhcChhH-HHHH
Confidence 88888877654 1122100 0 00112223333332222 1333
Q ss_pred HHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccC-chhHHHhhcccHHHHHHHhcCCCH
Q 000714 389 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLGLSSE 467 (1335)
Q Consensus 389 ~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~-~~~~~i~~~g~I~~Lv~lL~~~~~ 467 (1335)
........++.. .........-.++...+++....+++...+.-...++...+ .....+.....+|.+-.+..+.+.
T Consensus 335 ~~~~~~~~L~~~--~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~ 412 (759)
T KOG0211|consen 335 MVADKFSELSSA--VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNAL 412 (759)
T ss_pred HHhhhhhhHHHH--hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccc
Confidence 333333333221 11122223456677788888777777777666666655433 112234444557888888888888
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK 547 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~ 547 (1335)
.++...+....++....+. ..- -.-..|.+...+++..+.++.+..+.+..+-..++.......++..+|.++.+-.
T Consensus 413 ~vr~a~a~~~~~~~p~~~k--~~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~ 489 (759)
T KOG0211|consen 413 HVRSALASVITGLSPILPK--ERT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAE 489 (759)
T ss_pred hHHHHHhccccccCccCCc--CcC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhcc
Confidence 8888887777776532221 000 0124667777888889999999998887766555555555666677888888887
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCC-cHHHHHHHh----cCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHH
Q 000714 548 NGSANGKEIAAKTLNHLIHKSDTA-TISQLTALL----TSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMI 622 (1335)
Q Consensus 548 ~~~~~~k~~Aa~aL~~L~~~~~~~-~i~~Lv~LL----~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv 622 (1335)
....+++....+.+..++...... ..+.+..++ .+...+++..++..+..++...+ .+..+ ...++.+.
T Consensus 490 d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~-----~~~i~k~L 563 (759)
T KOG0211|consen 490 DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR-----LEEIPKLL 563 (759)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH-----HHhhHHHH
Confidence 777777777777777776554311 112233333 33445677777777777665444 22222 22366666
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCC
Q 000714 623 KILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDA 702 (1335)
Q Consensus 623 ~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~ 702 (1335)
.....++-..|...+.++..++. -.-..+.....++.+..+..+..+.++..+|..+-.+...-.. ...++-.
T Consensus 564 ~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----~~~~~~v 636 (759)
T KOG0211|consen 564 AMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----SVRDEEV 636 (759)
T ss_pred HHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch----HHHHHHH
Confidence 66666566666666666665542 1122344556788888888999999999999888877643221 2445556
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000714 703 LSPLVVLAGSPVLEVAEQATCALANL 728 (1335)
Q Consensus 703 i~~Lv~lL~~~~~~vk~~Aa~aL~nL 728 (1335)
.|.+..+-++.+.++|..|.-+...+
T Consensus 637 ~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 637 LPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHH
Confidence 67777777888888887777765554
No 75
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.85 E-value=0.003 Score=74.73 Aligned_cols=253 Identities=25% Similarity=0.273 Sum_probs=186.8
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
..+..++.++.+.+..++..++..+..+- ....++.+..++.+.++.++..|+.+|..+.. ++
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--PE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--hh----
Confidence 46788889998988999998888754432 23568999999999999999999999999873 44
Q ss_pred HHhcCCHHHHHHhhc-cCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCC----------H--HHHHHH
Q 000714 491 ITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS----------A--NGKEIA 557 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~-~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~----------~--~~k~~A 557 (1335)
.+++++.++. +++..++..++++|+.+-.. .++.+++..+++.. + .++..+
T Consensus 106 -----a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 -----AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred -----HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 7899999999 58899999999999998642 34777777777755 1 356666
Q ss_pred HHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHH
Q 000714 558 AKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSA 637 (1335)
Q Consensus 558 a~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa 637 (1335)
...|..+ .+...+..+...+.+....++..++.+|+.+.. .. ....+.+...+.+.+..++..++
T Consensus 170 ~~~l~~~---~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~---~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGEL---GDPEAIPLLIELLEDEDADVRRAAASALGQLGS---EN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHc---CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhc---ch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 6666666 556778889999999888999999999886422 11 23568888999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHH
Q 000714 638 SALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 717 (1335)
Q Consensus 638 ~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 717 (1335)
.+|+.+... ..+..+...+.+.+.........+... .........+...+.+....+
T Consensus 235 ~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~ 291 (335)
T COG1413 235 LALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGA------------LDLAEAALPLLLLLIDEANAV 291 (335)
T ss_pred HHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcc------------cCchhhHHHHHHHhhcchhhH
Confidence 999887644 256677777777776655555444330 111233455666677777777
Q ss_pred HHHHHHHHHHHhCCchH
Q 000714 718 AEQATCALANLILDSEV 734 (1335)
Q Consensus 718 k~~Aa~aL~nL~~~~~~ 734 (1335)
+..++.++..+......
T Consensus 292 ~~~~~~~l~~~~~~~~~ 308 (335)
T COG1413 292 RLEAALALGQIGQEKAV 308 (335)
T ss_pred HHHHHHHHHhhcccchH
Confidence 77777777766654443
No 76
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0055 Score=68.04 Aligned_cols=277 Identities=15% Similarity=0.101 Sum_probs=172.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHH-HhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHH
Q 000714 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI-TAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1335)
Q Consensus 455 I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i-~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i 533 (1335)
...++.++.+.++.++..|+.-+..++.. ..+... .+.-.++.+.++++...+ -+.|+.+|.|++.. +..|+.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHH
Confidence 34588999999999999999999998853 222111 233458889999887766 67899999999995 8899988
Q ss_pred HhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhh
Q 000714 534 ESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSA 613 (1335)
Q Consensus 534 ~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~ 613 (1335)
.+. .+..+++.+.+.....-+..+..|.||++..+ . +...+.+ . +.+ .
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~----------------~----~~~ll~~---~-~~~-------~ 127 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDD----------------E----VAALLTN---L-TEK-------K 127 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCch----------------H----HHHHHHh---c-ccc-------c
Confidence 887 77888888888766667778889999977442 0 1111111 1 000 0
Q ss_pred hcchHHHHHH-hhcCC-CH-HHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh--hcCChhHHHHHHHHHHHHHcc
Q 000714 614 ANDAVETMIK-ILSST-KE-ETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL--DVGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 614 ~~~~i~~Lv~-LL~s~-~~-~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL--~~~~~~v~~~aa~aL~~L~~~ 688 (1335)
+.++..++. +...+ +. .--...+..++||++. +..|..+.+... -+...++ .+.+..++.........++..
T Consensus 128 -~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~-~~gR~l~~~~k~-~p~~kll~ft~~~s~vRr~GvagtlkN~cF 204 (353)
T KOG2973|consen 128 -DSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQF-EAGRKLLLEPKR-FPDQKLLPFTSEDSQVRRGGVAGTLKNCCF 204 (353)
T ss_pred -ccchHHHHHHHhCcccccccchhHHHHHHHHHhhh-hhhhhHhcchhh-hhHhhhhcccccchhhhccchHHHHHhhhc
Confidence 123333333 34333 21 2245667788888877 666666655542 2222222 333444444433333333333
Q ss_pred ChhhhHHHHHh--CCChHHH---------------------HHHhc-----CCCHHHHHHHHHHHHHHhCCchHHHHHHH
Q 000714 689 VRENREVAAVA--RDALSPL---------------------VVLAG-----SPVLEVAEQATCALANLILDSEVSEKAIA 740 (1335)
Q Consensus 689 ~~~~~~~~i~~--~g~i~~L---------------------v~lL~-----~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~ 740 (1335)
+...+.. ..+ .+.+|.+ .+.+- .+++.++..-..+|..|+.....++.+.+
T Consensus 205 d~~~h~~-lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~ 283 (353)
T KOG2973|consen 205 DAKLHEV-LLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRS 283 (353)
T ss_pred cchhHHH-HhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHh
Confidence 3333331 222 1111221 13332 47778888899999999998888888877
Q ss_pred CCChHHHHHHhhcCChhhHHHHHHHHHHHhhc
Q 000714 741 EEIILPATRVLCEGTISGKTLAAAAIARLLHS 772 (1335)
Q Consensus 741 ~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~~ 772 (1335)
.|+-+.+-.+-+.........++.-+++++..
T Consensus 284 kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 284 KGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred cCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 77777666665555555788888888888864
No 77
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.80 E-value=0.00012 Score=71.22 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=105.4
Q ss_pred hHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHH
Q 000714 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRAL 449 (1335)
Q Consensus 370 i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i 449 (1335)
.+.-|+.-+...++.+.|+...--|+|.+-+|.++..+.+.+++...+..|...++...+.++..|+|+|.+.. +.+.|
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~-n~~~I 95 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKT-NAKFI 95 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChH-HHHHH
Confidence 34455555566677778888888999999999999999999999999999999999999999999999998764 46779
Q ss_pred hhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHh
Q 000714 450 QGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1335)
Q Consensus 450 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~ 493 (1335)
++++|+|.++..++++.+.+...|+..+..|+......|..+..
T Consensus 96 ~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 99999999999999999999999999999999655555666654
No 78
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.024 Score=63.09 Aligned_cols=388 Identities=15% Similarity=0.135 Sum_probs=218.3
Q ss_pred HHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCch--hHH---HHHhcCCcHHHHHhhc
Q 000714 42 SLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LRV---KVLLGGCIPPLLGLLK 116 (1335)
Q Consensus 42 Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~--~~~---~i~~~g~I~~Lv~lL~ 116 (1335)
++..|-.|-+..+.+.- + .+.+|.|-.=|...+..+|.-++..++.+..+.+ .-. -++..|..+.++....
T Consensus 63 cVscLERLfkakegahl-a---pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHL-A---PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccchhh-c---hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 56666666554433332 1 5677888888888899999999999999876654 222 3345788899999999
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcC
Q 000714 117 SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAG 196 (1335)
Q Consensus 117 s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g 196 (1335)
.++.++-.+|.+.+..++. - |.-++.+...+..++. -++||+... ..+.+..
T Consensus 139 geddeVAkAAiesikrial----f-------------paaleaiFeSellDdl-------hlrnlaakc----ndiaRvR 190 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL----F-------------PAALEAIFESELLDDL-------HLRNLAAKC----NDIARVR 190 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh----c-------------HHHHHHhcccccCChH-------HHhHHHhhh----hhHHHHH
Confidence 8899998889899888887 2 1122222222212211 134443211 1122223
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHH
Q 000714 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1335)
Q Consensus 197 ~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~ 276 (1335)
.++.++++ .+-.+....+...+|.+..|..-|+...+.-++..+......|+. -++.++-
T Consensus 191 VleLIiei-------------------fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgref 250 (524)
T KOG4413|consen 191 VLELIIEI-------------------FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREF 250 (524)
T ss_pred HHHHHHHH-------------------HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhh
Confidence 33333333 223333444555678888888877765555678888888888885 5678888
Q ss_pred HHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhc
Q 000714 277 IAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYD 356 (1335)
Q Consensus 277 i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~ 356 (1335)
+.+.|.|+.+..++...++ ++--...++....++-+ +..+.. .+...+. .++.. ..+
T Consensus 251 laQeglIdlicnIIsGads-------dPfekfralmgfgkffg-keaimd---------vseeaic---ealii---aid 307 (524)
T KOG4413|consen 251 LAQEGLIDLICNIISGADS-------DPFEKFRALMGFGKFFG-KEAIMD---------VSEEAIC---EALII---AID 307 (524)
T ss_pred cchhhHHHHHHHHhhCCCC-------CcHHHHHHHHHHHHHhc-chHHhh---------cCHHHHH---HHHHH---HHH
Confidence 8999999999998876543 22222233333333222 000000 0111111 11100 000
Q ss_pred ccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhccccc--HHH-HHHHHcCCCHHHHHHHHH
Q 000714 357 SKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEA--KRL-LVGLITMATNEVQEELVR 433 (1335)
Q Consensus 357 ~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~--i~~-Lv~lL~~~~~~v~~~A~~ 433 (1335)
--..+.+..++ .+++.++.+++.+.++.+....+...|. ... +.+....+...-++.++.
T Consensus 308 ----------------gsfEmiEmnDp-daieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaih 370 (524)
T KOG4413|consen 308 ----------------GSFEMIEMNDP-DAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIH 370 (524)
T ss_pred ----------------hhHHhhhcCCc-hHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHH
Confidence 01122233333 4788899999999888777666665443 222 344443333344566677
Q ss_pred HHHHhhhccCchhHHHhh--------------------cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHh
Q 000714 434 ALLKLCNNEGSLWRALQG--------------------REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1335)
Q Consensus 434 aL~~Ls~~~~~~~~~i~~--------------------~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~ 493 (1335)
+|.+++..-......+.+ -.-...+..+++.+.+++...+..++..++......+..+.+
T Consensus 371 aLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifak 450 (524)
T KOG4413|consen 371 ALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAK 450 (524)
T ss_pred HHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcC
Confidence 777765432211111111 122344566777788999999999999998654444455555
Q ss_pred cCCHHHHHHhhccC---ChHHHHHHHHHHHH
Q 000714 494 AGGIPPLVQILESG---SAKAKEDSASILRN 521 (1335)
Q Consensus 494 ~g~I~~Lv~LL~~~---~~~v~~~Aa~aL~n 521 (1335)
.|.|..+++.-... ..+.+..++.++.+
T Consensus 451 eefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 451 EEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred ccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 56665544432211 23445555555543
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.06 Score=65.94 Aligned_cols=223 Identities=13% Similarity=0.123 Sum_probs=142.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhh
Q 000714 239 ATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANIS 318 (1335)
Q Consensus 239 ~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs 318 (1335)
.-+-++.+|++..+ .+|..|...+..+.-..++.-+. .+|.|++-|.+| |+.++..|+..+|.|+
T Consensus 145 La~Dv~tLL~sskp-YvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDp---------Dp~V~SAAV~VICELA 209 (877)
T KOG1059|consen 145 LADDVFTLLNSSKP-YVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDP---------DPSVVSAAVSVICELA 209 (877)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCC---------CchHHHHHHHHHHHHH
Confidence 34567788888766 89999999999887655553322 578899988886 5889999999999998
Q ss_pred cCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHh
Q 000714 319 GGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLY 398 (1335)
Q Consensus 319 ~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~ 398 (1335)
.- +|++--+ +-|.|-+++-..+..=+--+.++..++|.
T Consensus 210 rK-------------nPknyL~-----------------------------LAP~ffkllttSsNNWmLIKiiKLF~aLt 247 (877)
T KOG1059|consen 210 RK-------------NPQNYLQ-----------------------------LAPLFYKLLVTSSNNWVLIKLLKLFAALT 247 (877)
T ss_pred hh-------------CCccccc-----------------------------ccHHHHHHHhccCCCeehHHHHHHHhhcc
Confidence 73 2321111 12334444433332112222333333332
Q ss_pred C-CcchhhhhcccccHHHHHHHHcCCCH-HHHHHHHHHHH--HhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHH
Q 000714 399 G-NPLLSIKLENSEAKRLLVGLITMATN-EVQEELVRALL--KLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSV 474 (1335)
Q Consensus 399 ~-~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~A~~aL~--~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~ 474 (1335)
- .|...+ ..+++|.+++.+... .+...++.++. +++.+..++...+. =+++.|-.++.++++.++.-++
T Consensus 248 plEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 248 PLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred ccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHH
Confidence 2 233322 346777777766543 33344444432 44444444444332 4577788888999999999999
Q ss_pred HHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHH
Q 000714 475 ALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC 532 (1335)
Q Consensus 475 ~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~ 532 (1335)
-+++.+...++.....- -..++++|.+.++.+|..|...|+.+.. +++-..
T Consensus 321 lam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl~e 371 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS--KKNLME 371 (877)
T ss_pred HHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhHHH
Confidence 99999987666643322 3467889999999999999999999875 444433
No 80
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.71 E-value=0.00036 Score=67.93 Aligned_cols=124 Identities=20% Similarity=0.198 Sum_probs=106.2
Q ss_pred ccHHHHHHHHc-CCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 411 EAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 411 g~i~~Lv~lL~-~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
+.++.||.-.. ..+.+.++..+.-|.|.+.++ .++..+++...+..++..|..+++.+++.+.+.|||+|. ++.+..
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP-~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP-INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc-chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHH
Confidence 45566665553 457788999999999998876 447778889999999999999999999999999999995 688999
Q ss_pred HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhc
Q 000714 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESA 536 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~ 536 (1335)
.|.+++++|.++..+.++...+...++.++..|+..+...|+.+...
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p 140 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSP 140 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccH
Confidence 99999999999999999988889999999999998777777777653
No 81
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0071 Score=71.86 Aligned_cols=353 Identities=13% Similarity=0.150 Sum_probs=198.8
Q ss_pred HhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhh
Q 000714 103 LLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS 182 (1335)
Q Consensus 103 ~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs 182 (1335)
..++.+||++..+.+.+..+|-.|+..|+|++. -..+....+-......|+++....... +++ ++..|-.|-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaK----v~k~~v~~~Fn~iFdvL~klsaDsd~~---V~~-~aeLLdRLi 152 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAK----VAKGEVLVYFNEIFDVLCKLSADSDQN---VRG-GAELLDRLI 152 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHH----HhccCcccchHHHHHHHHHHhcCCccc---ccc-HHHHHHHHH
Confidence 445789999999999999999999999999998 333333333344445566665544322 332 222333332
Q ss_pred ----cCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHH
Q 000714 183 ----TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAE 258 (1335)
Q Consensus 183 ----~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~ 258 (1335)
...+.. .-=.+.||.|-.-+...++..|.....-+.-|- ..++....-.-...++-|+++|+++++ ++|..
T Consensus 153 kdIVte~~~t---FsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Ld-s~P~~~m~~yl~~~ldGLf~~LsD~s~-eVr~~ 227 (675)
T KOG0212|consen 153 KDIVTESAST---FSLPEFIPLLRERIYVINPMTRQFLVSWLYVLD-SVPDLEMISYLPSLLDGLFNMLSDSSD-EVRTL 227 (675)
T ss_pred HHhccccccc---cCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh-cCCcHHHHhcchHHHHHHHHHhcCCcH-HHHHH
Confidence 111100 000233444444445567888888887775443 322221111235677889999999877 88866
Q ss_pred HHHHHHhccc---CCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhc-CCchhhhhhcccccC
Q 000714 259 AAGALKSLSD---HCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISG-GLSNVISSLGQSLES 334 (1335)
Q Consensus 259 Aa~aL~nLs~---~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~-g~~~~i~~L~~l~~~ 334 (1335)
+-.+|..+-. ..+.. +--...++.++.-+.++ ++.+|..|...+..+-. .....+.++
T Consensus 228 ~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss---------~~~iq~~al~Wi~efV~i~g~~~l~~~------ 289 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSS---------EPEIQLKALTWIQEFVKIPGRDLLLYL------ 289 (675)
T ss_pred HHHHHHHHHHHHhcCccc---cCcccchhhccccccCC---------cHHHHHHHHHHHHHHhcCCCcchhhhh------
Confidence 6665544331 01111 11223567777777765 46788777766665442 111111111
Q ss_pred CCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHH---HHHHHHhCCcchhhhhcccc
Q 000714 335 CSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTI---EALASLYGNPLLSIKLENSE 411 (1335)
Q Consensus 335 ~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa---~aL~~L~~~~~~~~~i~~~g 411 (1335)
.|.+.. +..++........++.+. .-+..+.+.+.....+.-..
T Consensus 290 ----------s~il~~-----------------------iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ 336 (675)
T KOG0212|consen 290 ----------SGILTA-----------------------ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS 336 (675)
T ss_pred ----------hhhhhh-----------------------cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH
Confidence 111111 111222222211222222 22334444444333343345
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhh-cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG-REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~-~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
.+..+...+.+...+.|..+..-+..|-...++ +.+.- ..--+.|+.-|++.++++...+...+.+++.+ +.....
T Consensus 337 ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~--ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s-~~~~~~ 413 (675)
T KOG0212|consen 337 IIEVLTKYLSDDREETRIAVLNWIILLYHKAPG--QLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS-SNSPNL 413 (675)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc--hhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC-cccccH
Confidence 677888888888888888888777777555443 22222 23457789999999999999999999999963 433211
Q ss_pred HHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc
Q 000714 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 525 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~ 525 (1335)
+ ..+..|+++.+....-...++.-++..||..
T Consensus 414 -~--~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 414 -R--KFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred -H--HHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 1 1233455555555555667777788877753
No 82
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.026 Score=68.66 Aligned_cols=385 Identities=14% Similarity=0.080 Sum_probs=231.9
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhh
Q 000714 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG 451 (1335)
Q Consensus 372 ~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~ 451 (1335)
+++-+-+++.....+|+...---..++.+-..-.. .-...+..+..-+...++++|+....+|..+.........
T Consensus 58 ~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~-~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---- 132 (569)
T KOG1242|consen 58 PCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP-RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---- 132 (569)
T ss_pred HHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc-chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH----
Confidence 34444444444444555544444444333210000 0023456677778888999999999999887654432211
Q ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHH-HHHHHHHHHHHhccChhhH
Q 000714 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKA-KEDSASILRNLCNHSEDIR 530 (1335)
Q Consensus 452 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v-~~~Aa~aL~nL~~~~~~~r 530 (1335)
....+.+.+++...+-.-+..+.+.++-+... ..-..+.+.+.+..|-...++..... ++.+.-+....+..--
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg--- 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG--- 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---
Confidence 23467788888888888888889888888753 33456667778888888777664333 3322222221111100
Q ss_pred HHHHhcCcH---HHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHH----HHhcCCCcchHHHHHHHHHHhhhhcC
Q 000714 531 ACVESADAV---PALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLT----ALLTSDLPESKVYVLDALKSMLSVVS 603 (1335)
Q Consensus 531 ~~i~~~g~i---~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv----~LL~s~~~~~k~~a~~aL~~L~~~~~ 603 (1335)
...+...+ |.++.-+-+..+.+|+.|..+...+...-+...+..++ .-+....=..+..+...++.+...++
T Consensus 208 -~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap 286 (569)
T KOG1242|consen 208 -PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP 286 (569)
T ss_pred -CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch
Confidence 11123333 44444444556677877777777766655554444432 22222233577888888887554433
Q ss_pred chHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC--ChhhHHHH---------------------------
Q 000714 604 FSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET--RKDLRESS--------------------------- 654 (1335)
Q Consensus 604 ~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~--~~~~~~~l--------------------------- 654 (1335)
..- . ......+|.+.+.|.+.++++|.++-.++-+++.- +++....+
T Consensus 287 ~qL--s--~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 287 KQL--S--LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred HHH--H--HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 221 1 22256799999999999999999999999988764 22221111
Q ss_pred --HhcCC----hHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000714 655 --IAVKT----LWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANL 728 (1335)
Q Consensus 655 --~~~g~----v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL 728 (1335)
+++-. +|.|.+-+...+....+.++..+.+++...++.+.+.-+-...+|.|-..+.+..+++|..++.+|+.+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 11111 233333334556667788888999998766444443334445666666777778899999999999988
Q ss_pred hCCchHHHHHHHCCChHHHHHHhhcCChh-hHHHHHHHHHHHhhcCC
Q 000714 729 ILDSEVSEKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLHSRK 774 (1335)
Q Consensus 729 ~~~~~~~~~~~~~g~v~~L~~ll~~~~~~-~k~~A~~aL~~Ll~~~~ 774 (1335)
..+-..... .+.++-+.+..+..... .+..++..|...+++..
T Consensus 443 ~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~ 486 (569)
T KOG1242|consen 443 LERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG 486 (569)
T ss_pred HHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhHHHHHhccc
Confidence 753333222 66777787777776666 67777777777776543
No 83
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0099 Score=70.68 Aligned_cols=344 Identities=15% Similarity=0.099 Sum_probs=211.2
Q ss_pred hHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhH-HHhhcccHHHHHHHhc
Q 000714 385 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWR-ALQGREGIQLLISLLG 463 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~-~i~~~g~I~~Lv~lL~ 463 (1335)
.+|.+|.+.+.+++.-........-......+.++..+++..++..| ..+-.+-.+-...+. .+-=.+-||.|-+-+.
T Consensus 99 ~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFsL~~~ipLL~eriy 177 (675)
T KOG0212|consen 99 QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFSLPEFIPLLRERIY 177 (675)
T ss_pred eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccCHHHHHHHHHHHHh
Confidence 47899999999886533222222234455667777666666655433 333333211100000 0110123444444444
Q ss_pred CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHh-cCcHHHH
Q 000714 464 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVES-ADAVPAL 542 (1335)
Q Consensus 464 ~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~-~g~i~~L 542 (1335)
.-++..+...+.-|..|-. .|+....=.-....+.|.+.|.+.++++|..+-.++.++-.. -......++ ...++.+
T Consensus 178 ~~n~~tR~flv~Wl~~Lds-~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~e-I~s~P~s~d~~~~i~vl 255 (675)
T KOG0212|consen 178 VINPMTRQFLVSWLYVLDS-VPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAE-IRSSPSSMDYDDMINVL 255 (675)
T ss_pred cCCchHHHHHHHHHHHHhc-CCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-HhcCccccCcccchhhc
Confidence 5578888888877877753 343211111123567788899999999998887777766532 111111212 3467888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHH-------HHHHhcCCCc-chHHHHHHHHHHhhhhcCchHHHHHhhhh
Q 000714 543 LWLLKNGSANGKEIAAKTLNHLIHKSDTATISQ-------LTALLTSDLP-ESKVYVLDALKSMLSVVSFSDILREGSAA 614 (1335)
Q Consensus 543 v~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~-------Lv~LL~s~~~-~~k~~a~~aL~~L~~~~~~~~~~~~~i~~ 614 (1335)
+.-+.+..+..+..|...+..+..-.....++. +++.+.+..+ ..++++...=+.+..+.+....-++ +.-
T Consensus 256 v~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~ 334 (675)
T KOG0212|consen 256 VPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDY 334 (675)
T ss_pred cccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cch
Confidence 999999999999999999988877665444333 3333333333 3555554444334444333222111 222
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhH
Q 000714 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1335)
Q Consensus 615 ~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 694 (1335)
...+..+.++++++.++++..+..-+..|-... .++-........+.|+.-|.+.+++++..+...+.+++.+....+-
T Consensus 335 ~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~-p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~ 413 (675)
T KOG0212|consen 335 GSIIEVLTKYLSDDREETRIAVLNWIILLYHKA-PGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL 413 (675)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-cchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH
Confidence 345788888999999999999999888888763 3343444556788899999999999999999999999976543211
Q ss_pred HHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhC--CchHHHHH
Q 000714 695 VAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DSEVSEKA 738 (1335)
Q Consensus 695 ~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~--~~~~~~~~ 738 (1335)
-.++..|.++++....-.+.++.-++.+||. +++.....
T Consensus 414 -----~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~ 454 (675)
T KOG0212|consen 414 -----RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRS 454 (675)
T ss_pred -----HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHH
Confidence 1234556666677666677899999998883 66665554
No 84
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.048 Score=60.78 Aligned_cols=277 Identities=16% Similarity=0.141 Sum_probs=166.6
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHHhhcCcc----hhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHH
Q 000714 198 IDILVKLLTLGQSSTQAHVCFLLACMMEEDVS----VCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDA 273 (1335)
Q Consensus 198 I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~----~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~ 273 (1335)
.+.|-.-|..++..++..+++.+.++...... ....+++.+..+.++..+...++ ++...|...+..++. -+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd-eVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD-EVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH-HHHHHHHHHHHHHHh-cHHH
Confidence 34444456677888999999988888743221 23345689999999999988876 899999999999995 5666
Q ss_pred HHHHHHCCChHHHHHH-hcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHH
Q 000714 274 RREIAGSNGIPAMINA-TIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASAL 352 (1335)
Q Consensus 274 r~~i~~~Ggi~~Lv~l-L~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll 352 (1335)
-..++++.-.+.+-.. +.. .+++-.+......+..+....
T Consensus 162 leaiFeSellDdlhlrnlaa--------kcndiaRvRVleLIieifSiS------------------------------- 202 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAA--------KCNDIARVRVLELIIEIFSIS------------------------------- 202 (524)
T ss_pred HHHhcccccCChHHHhHHHh--------hhhhHHHHHHHHHHHHHHhcC-------------------------------
Confidence 6677666655433211 000 001222222333333332211
Q ss_pred HhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC--CCHHHHHH
Q 000714 353 MIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM--ATNEVQEE 430 (1335)
Q Consensus 353 ~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~ 430 (1335)
.++..-+...+....|..=++...+..++.++++-...++.....+..+...|.|..+...+.- ++|.-+-.
T Consensus 203 ------pesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr 276 (524)
T KOG4413|consen 203 ------PESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR 276 (524)
T ss_pred ------HHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH
Confidence 0111111223444455555556566677888888888888888888888888888888887743 34444443
Q ss_pred HHHHHHHh----hhccCchhHHHhhc--ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhh
Q 000714 431 LVRALLKL----CNNEGSLWRALQGR--EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 504 (1335)
Q Consensus 431 A~~aL~~L----s~~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL 504 (1335)
+......+ ...+ ...+.+.++ -.|..-.++++..+++.++.|..+++.+.+ +.+..+.+.+.|- |..-.++
T Consensus 277 almgfgkffgkeaimd-vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGS-nteGadlllkTgp-paaehll 353 (524)
T KOG4413|consen 277 ALMGFGKFFGKEAIMD-VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGS-NTEGADLLLKTGP-PAAEHLL 353 (524)
T ss_pred HHHHHHHHhcchHHhh-cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccC-CcchhHHHhccCC-hHHHHHH
Confidence 43333332 2111 111223221 234555667778899999999999999995 5777777766554 3333322
Q ss_pred ----ccCChHHHHHHHHHHHHHhc
Q 000714 505 ----ESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 505 ----~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
......-++.+..+|.+++.
T Consensus 354 arafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 354 ARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHhcccccchHHHHHHHHHHhhc
Confidence 22223446777888888875
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.59 E-value=0.024 Score=67.48 Aligned_cols=311 Identities=15% Similarity=0.130 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC--CCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHH
Q 000714 384 FLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM--ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1335)
Q Consensus 384 ~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l 461 (1335)
..+|..+.+.+..+..+++.-..+.+.+.--.++.-|.. .+..-|++|.+.++.+...+..... + -.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~-~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-I-PRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-C-CHHHHHHHHHH
Confidence 679999999999999988877777776665556665543 3456778999988888766433221 2 24778999999
Q ss_pred hcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHH
Q 000714 462 LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPA 541 (1335)
Q Consensus 462 L~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~ 541 (1335)
.++.++..+..|..+|+.++-.+|+ .+.++||+..|++.+-++..+..+..+.++..+-. +|+.|..+...--++.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLES 192 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHH
Confidence 9999999999999999999976555 57789999999999988877788899999999987 4888887765444555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCc--chHHHHHHHHHHhhhhcCchHHHHHhhhhcchHH
Q 000714 542 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP--ESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 619 (1335)
Q Consensus 542 Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~--~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~ 619 (1335)
++.-+.+.+... . .++. +....+..++..+ +.+++..+.-...+..++.
T Consensus 193 l~apftd~~~~~-------------~--------------~~~~~~~~l~~s~~ai~~~--LrsW~GLl~l~~~~~~~lk 243 (371)
T PF14664_consen 193 LLAPFTDFHYRK-------------I--------------KDDRELERLQASAKAISTL--LRSWPGLLYLSMNDFRGLK 243 (371)
T ss_pred HHHhhhhhhccc-------------c--------------ccchHHHHHHHHHHHHHHH--HhcCCceeeeecCCchHHH
Confidence 555554431100 0 0000 0111112222221 2334333322223336799
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChh-hHHH------HHhcCChHHHHHhhhc--CChhHHHHHHHHHHHHHccCh
Q 000714 620 TMIKILSSTKEETQAKSASALAGIFETRKD-LRES------SIAVKTLWSVMKLLDV--GSECILVEASRCLAAIFLSVR 690 (1335)
Q Consensus 620 ~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~-~~~~------l~~~g~v~~Lv~LL~~--~~~~v~~~aa~aL~~L~~~~~ 690 (1335)
.|+..|..+++++|......+..+..-... .... ....|-...-..+-.+ +.......-..--.++..+.-
T Consensus 244 sLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~ 323 (371)
T PF14664_consen 244 SLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYL 323 (371)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHH
Confidence 999999999999999999999888764221 1111 1111111000111100 000000000000000000000
Q ss_pred hhhHHHHHhCCChHHHHHHhcCC-CHHHHHHHHHHHHHHh
Q 000714 691 ENREVAAVARDALSPLVVLAGSP-VLEVAEQATCALANLI 729 (1335)
Q Consensus 691 ~~~~~~i~~~g~i~~Lv~lL~~~-~~~vk~~Aa~aL~nL~ 729 (1335)
..--..+++.|.++.|++++.+. +..+...|.--|..+.
T Consensus 324 aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 324 ALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 00001488999999999999987 7778888888777664
No 86
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.58 E-value=0.00011 Score=57.97 Aligned_cols=41 Identities=46% Similarity=0.687 Sum_probs=38.5
Q ss_pred ChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 484 NDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 484 ~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
+++++..+++.|++|+|+++|+++++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 47889999999999999999999999999999999999973
No 87
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.014 Score=72.26 Aligned_cols=179 Identities=18% Similarity=0.133 Sum_probs=116.9
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHH-HHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCcc
Q 000714 64 SQAVPVLVSLLRSGSLAVKIQAAT-VLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYV 142 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~~~~vk~~aa~-~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~ 142 (1335)
.|.++.+-+-|.+...+-|..+++ +++.+..+.|. ..-.|.++......+.+.++-+--.|.+.+.+. .
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~---P- 81 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK---P- 81 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccC---c-
Confidence 456677777776655566666665 55666544432 245677888888888888877766777666621 1
Q ss_pred ccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHH
Q 000714 143 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1335)
Q Consensus 143 ~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~ 222 (1335)
....+++..+ ++...+..+.++. .|++.+++-.-.... .-...++.+.+++.++.+|..++.+.++
T Consensus 82 ----~~a~~avnt~---~kD~~d~np~iR~---lAlrtm~~l~v~~i~----ey~~~Pl~~~l~d~~~yvRktaa~~vak 147 (734)
T KOG1061|consen 82 ----DLAILAVNTF---LKDCEDPNPLIRA---LALRTMGCLRVDKIT----EYLCDPLLKCLKDDDPYVRKTAAVCVAK 147 (734)
T ss_pred ----hHHHhhhhhh---hccCCCCCHHHHH---HHhhceeeEeehHHH----HHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 1122334433 3444444455544 466666643222211 2346789999999999999999988877
Q ss_pred HhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC
Q 000714 223 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1335)
Q Consensus 223 La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~ 270 (1335)
+-.. ......+.|.++.|..++.+.+. .+...|..+|..+...+
T Consensus 148 l~~~---~~~~~~~~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 148 LFDI---DPDLVEDSGLVDALKDLLSDSNP-MVVANALAALSEIHESH 191 (734)
T ss_pred hhcC---ChhhccccchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHhC
Confidence 6433 34556689999999999997665 88899999998887543
No 88
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=0.12 Score=66.07 Aligned_cols=560 Identities=17% Similarity=0.107 Sum_probs=305.1
Q ss_pred CchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHh
Q 000714 35 SVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGL 114 (1335)
Q Consensus 35 s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~l 114 (1335)
+...+......+..++-.....|. ..-.+|.+...+ ....++...++.-++.+....-.+ -...--.+++-.+
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~t----r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~--~~~~~ll~~le~l 167 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERT----RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGP--EYAHMLLPPLELL 167 (759)
T ss_pred hhhhhhhhhccccchhhhcccchh----hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccch--hHHHHhhHHHHhh
Confidence 445556666666665532222222 123556666666 677788888888888886432111 1111123333334
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHh
Q 000714 115 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 194 (1335)
Q Consensus 115 L~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~ 194 (1335)
.......+|+.++..|..++.+. ...+. .+-.+|.+..+-....- ..+..+++.+..+....++. .++
T Consensus 168 ~~~eet~vr~k~ve~l~~v~~~~----~~~~~--~~~lv~l~~~l~~~d~~---~sr~sacglf~~~~~~~~~~---~vk 235 (759)
T KOG0211|consen 168 ATVEETGVREKAVESLLKVAVGL----PKEKL--REHLVPLLKRLATGDWF---QSRLSACGLFGKLYVSLPDD---AVK 235 (759)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----ChHHH--HHHHHHHHHHccchhhh---hcchhhhhhhHHhccCCChH---HHH
Confidence 43444556889999999998843 21111 22234444443333111 12224555666555433321 223
Q ss_pred cCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHH
Q 000714 195 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r 274 (1335)
....+..-++....++.++..++.-+.+++..- .......+.++.++++..+..+ .+|..|...+.++...-+.--
T Consensus 236 ~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~---~~~~~~s~v~~~~~~L~~Ddqd-sVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 236 RELRPIVQSLCQDDTPMVRRAVASNLGNIAKVL---ESEIVKSEVLPTLIQLLRDDQD-SVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHhhccccchhhHHHHHhhhHHHHHHH---HHHHHHhhccHHHhhhhhcchh-hHHHHHHHHHHHHHHhcCCch
Confidence 344455667777788899999998888877442 2366778999999999988776 889888888877663111000
Q ss_pred HHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHh
Q 000714 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1335)
Q Consensus 275 ~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~ 354 (1335)
=...-..+.++....+++ ..+++.......-++.. +++ +..
T Consensus 312 --d~~~~~~~~l~~~~~d~~---------~~v~~~~~~~~~~L~~~-------~~~--~~~------------------- 352 (759)
T KOG0211|consen 312 --DVVKSLTESLVQAVEDGS---------WRVSYMVADKFSELSSA-------VGP--SAT------------------- 352 (759)
T ss_pred --hhhhhhhHHHHHHhcChh---------HHHHHHHhhhhhhHHHH-------hcc--ccC-------------------
Confidence 011224566777665543 44444444433333320 000 000
Q ss_pred hcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHH--hCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHH
Q 000714 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASL--YGNPLLSIKLENSEAKRLLVGLITMATNEVQEELV 432 (1335)
Q Consensus 355 l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L--~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~ 432 (1335)
. . ...+....+++.... ..+...+.-...+ +.+......+.....++.+..+..+.++.++...+
T Consensus 353 ---------~--~-~~~~~~~~l~~~~~~-e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 ---------R--T-QLVPPVSNLLKDEEW-EVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred ---------c--c-cchhhHHHHhcchhh-hhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 0 0 001122222222211 1233333323333 22333344455555677777777788888888777
Q ss_pred HHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHH
Q 000714 433 RALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAK 512 (1335)
Q Consensus 433 ~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~ 512 (1335)
.....+.-.-+.. +.+ ..-.|.+...+++..+.++.+-.+.+..+-...+..........-+|.++.+-....-+++
T Consensus 420 ~~~~~~~p~~~k~-~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr 496 (759)
T KOG0211|consen 420 SVITGLSPILPKE-RTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVR 496 (759)
T ss_pred ccccccCccCCcC-cCc--cccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHH
Confidence 7666654332210 001 2335667777788888888888876655543333334444555667888877766666777
Q ss_pred HHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC-----CcHHHHHHHhcCCCcch
Q 000714 513 EDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-----ATISQLTALLTSDLPES 587 (1335)
Q Consensus 513 ~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-----~~i~~Lv~LL~s~~~~~ 587 (1335)
....+.+..++.. .+...+.+ -.-+.+..-+.+....+++.|+..|..++..-.. ..++.++.....++--.
T Consensus 497 ~ail~~ip~la~q--~~~~~~~~-~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~ 573 (759)
T KOG0211|consen 497 LAILEYIPQLALQ--LGVEFFDE-KLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLV 573 (759)
T ss_pred HHHHHHHHHHHHh--hhhHHhhH-HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccch
Confidence 7777777777753 22222211 1112222223334456788888888888765432 33455555544444455
Q ss_pred HHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 000714 588 KVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL 667 (1335)
Q Consensus 588 k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL 667 (1335)
+.....++..+..+.+.. +.....+|.+.++..+..+.+|..++..|-.+...-. ....+..+.+.+..+.
T Consensus 574 R~t~l~si~~la~v~g~e------i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~---~~~~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 574 RMTTLFSIHELAEVLGQE------ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD---ESVRDEEVLPLLETLS 644 (759)
T ss_pred hhHHHHHHHHHHHHhccH------HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc---hHHHHHHHHHHHHHhc
Confidence 555556665544443332 2224458999999999999999999999988764411 2233344455555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 000714 668 DVGSECILVEASRCLAA 684 (1335)
Q Consensus 668 ~~~~~~v~~~aa~aL~~ 684 (1335)
.+.+.++...+..+...
T Consensus 645 ~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGS 661 (759)
T ss_pred cCcccchhHHHHHHHHH
Confidence 55555555544444433
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.02 Score=63.76 Aligned_cols=112 Identities=19% Similarity=0.180 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHh
Q 000714 414 RLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1335)
Q Consensus 414 ~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~ 493 (1335)
..++.++.+.+|.+++.|+.-+.+++.. +.....-.+...++.+.+++....+ -+.|+.+|.|++. .++.+..+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHHHHH
Confidence 3578899999999999999999999876 2211111223457889999987666 6788999999995 5777888877
Q ss_pred cCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhH
Q 000714 494 AGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIR 530 (1335)
Q Consensus 494 ~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r 530 (1335)
. .+..+++.+.++....-...+..|.||++.+....
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~ 117 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVA 117 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHH
Confidence 6 77788888887766666778899999999744333
No 90
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.061 Score=65.49 Aligned_cols=322 Identities=17% Similarity=0.112 Sum_probs=185.2
Q ss_pred hHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHH-HHHHHHHhhhccCchhHH
Q 000714 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEE-LVRALLKLCNNEGSLWRA 448 (1335)
Q Consensus 370 i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~-A~~aL~~Ls~~~~~~~~~ 448 (1335)
+...+.++++ .+....|..++..++.+..+. .-..+.+.+.+..+....++.....++. +.-+....+..-...
T Consensus 135 ~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~--- 209 (569)
T KOG1242|consen 135 VLELLLELLT-STKIAERAGAAYGLAGLVNGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP--- 209 (569)
T ss_pred HHHHHHHHhc-cccHHHHhhhhHHHHHHHcCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC---
Confidence 3455666666 344456777777777775543 2234445667777777777665544443 333333333222221
Q ss_pred HhhcccHHHHHHHh---cCCCHHHHHHHHHHHHHhccCC-hHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 449 LQGREGIQLLISLL---GLSSEQQQECSVALLCLLSNEN-DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL---~~~~~~v~~~A~~aL~nLs~~~-~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
.+..-++.+..++ .+..+.+++.|..+...+-..- +..... .+|.++.-+....=..+..++..|+.++.
T Consensus 210 -~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~-----llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 210 -FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL-----LLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred -CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH-----hhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1233344444444 4556778887776665554221 221111 23444443333333567788889998887
Q ss_pred cChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCC--Ccc-hHHHHHHHHHHhhhh
Q 000714 525 HSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSD--LPE-SKVYVLDALKSMLSV 601 (1335)
Q Consensus 525 ~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~--~~~-~k~~a~~aL~~L~~~ 601 (1335)
.. ..+-...-...+|.+.+.|.+..+++|+.+..+|.++...-+...|..++..|-.. +|. .-..+...|+.-+-+
T Consensus 284 ~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV 362 (569)
T KOG1242|consen 284 CA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV 362 (569)
T ss_pred hc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee
Confidence 53 33333444679999999999999999999999999999888777676665554321 222 112222323211101
Q ss_pred cCchHHHHHhhhhcchHHHHHHh----hcCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhcCChHHHHHhhhcCChhHHH
Q 000714 602 VSFSDILREGSAANDAVETMIKI----LSSTKEETQAKSASALAGIFETRKDLRESS-IAVKTLWSVMKLLDVGSECILV 676 (1335)
Q Consensus 602 ~~~~~~~~~~i~~~~~i~~Lv~L----L~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l-~~~g~v~~Lv~LL~~~~~~v~~ 676 (1335)
. . .+...+..++.+ +...+..+++.++..+.|+|.-.++-+... .-...+|.+-..+....|+++.
T Consensus 363 -~---~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~ 433 (569)
T KOG1242|consen 363 -A---E-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRA 433 (569)
T ss_pred -e---e-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHH
Confidence 0 0 112234444444 445678899999999999997754432221 1112344444444556788899
Q ss_pred HHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHH
Q 000714 677 EASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEV 717 (1335)
Q Consensus 677 ~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 717 (1335)
-+++++..+..... .+ .+ .+.+|.+.+.++....++
T Consensus 434 vaarAL~~l~e~~g--~~-~f--~d~~p~l~e~~~~~k~~~ 469 (569)
T KOG1242|consen 434 VAARALGALLERLG--EV-SF--DDLIPELSETLTSEKSLV 469 (569)
T ss_pred HHHHHHHHHHHHHH--hh-cc--cccccHHHHhhccchhhh
Confidence 99999988874321 11 12 677888888887665554
No 91
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.056 Score=67.93 Aligned_cols=355 Identities=18% Similarity=0.203 Sum_probs=214.2
Q ss_pred HHHHHHHHhhcCChhhHH----HHHhcCCHHHHHHHhcc-CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHh
Q 000714 173 LLTGALRNLSTSTEGFWA----ATVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLL 247 (1335)
Q Consensus 173 ~a~~aL~nLs~~~~~~~~----~i~~~g~I~~Lv~lL~s-~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL 247 (1335)
....+|+|+...+++... .+.--|-.+.+..+++. +++.++..+...+. +...+.+....+...+.+..|+.+|
T Consensus 1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~-~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL-LATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH-HHhcccHHHHHHHhhhHHHHHHHHH
Confidence 567789998876652211 22334777778777765 56688888888885 4455556788899999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhc----CCch
Q 000714 248 GSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISG----GLSN 323 (1335)
Q Consensus 248 ~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~----g~~~ 323 (1335)
.+.. ..|..+...|..|++ +.+.-..-.+.||+..+..++...+ ....+..++..++.+.. |...
T Consensus 1823 HS~P--S~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~--------~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1823 HSQP--SMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTN--------SDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred hcCh--HHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccC--------cHHHHHHHHHHHHHhhhccccCCce
Confidence 8863 689999999999997 6677777778888888777766543 35566677777888764 1111
Q ss_pred ---hhhhhcccccCCCChhHHHhHh-hhhHHHHHhhcccccCCCCC-Cch---h----hHHHHHHhhCCCC-chhHHHHH
Q 000714 324 ---VISSLGQSLESCSSPAQVADTL-GALASALMIYDSKAESTKPS-DPL---I----VEQTLVNQFKPRL-PFLVQERT 390 (1335)
Q Consensus 324 ---~i~~L~~l~~~~~~~~~i~~~~-Gal~~ll~~l~~~~~s~~~~-~~~---~----i~~~Lv~LL~~~~-~~~~q~~a 390 (1335)
++.+|-+ ..++.. ..-+..++.+....+..+.+ ++. . +.....++.+... +..+....
T Consensus 1892 ~ITL~kFLP~---------~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~ 1962 (2235)
T KOG1789|consen 1892 TITLIKFLPE---------IFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNT 1962 (2235)
T ss_pred eeehHHhchH---------HHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccC
Confidence 1111110 011000 00123344444333332221 110 1 1111112222110 00000000
Q ss_pred HHHHHHH--hCCc------chhhhhcc------------cccHHHHHHHHcCCCHH--HHHHHHHHHHHhhhccCchhHH
Q 000714 391 IEALASL--YGNP------LLSIKLEN------------SEAKRLLVGLITMATNE--VQEELVRALLKLCNNEGSLWRA 448 (1335)
Q Consensus 391 a~aL~~L--~~~~------~~~~~i~~------------~g~i~~Lv~lL~~~~~~--v~~~A~~aL~~Ls~~~~~~~~~ 448 (1335)
-+--+.. +..+ -+|..+.. .+.+..+.+++...+++ ...-...++..|-+.+++....
T Consensus 1963 PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq 2042 (2235)
T KOG1789|consen 1963 PEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ 2042 (2235)
T ss_pred chhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh
Confidence 0000000 0000 11112211 23344556666555443 2334455666677777776666
Q ss_pred HhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc-Ch
Q 000714 449 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-SE 527 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-~~ 527 (1335)
+---|-+|.++..+...+..+-..|..+|-.|+. +.-+.+++.....+.+++..++.. +...--|+.+|..+... ..
T Consensus 2043 ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2043 LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHH
Confidence 6667889999998887777777899999999994 678889999988999999988765 33444788888888753 23
Q ss_pred hhHHHHHhcCcHHHHHHHhhcCC
Q 000714 528 DIRACVESADAVPALLWLLKNGS 550 (1335)
Q Consensus 528 ~~r~~i~~~g~i~~Lv~LL~~~~ 550 (1335)
+......+.|.+|.|+++|...+
T Consensus 2121 eLVAQ~LK~gLvpyLL~LLd~~t 2143 (2235)
T KOG1789|consen 2121 ELVAQMLKCGLVPYLLQLLDSST 2143 (2235)
T ss_pred HHHHHHhccCcHHHHHHHhcccc
Confidence 44556677999999999998743
No 92
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.11 Score=64.35 Aligned_cols=286 Identities=15% Similarity=0.123 Sum_probs=162.4
Q ss_pred chhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHh
Q 000714 383 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 462 (1335)
Q Consensus 383 ~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL 462 (1335)
+..+|.+|+++|..+ |..+...-.+-.+-++..+.++.||+.|+.++-.|-.-..+....+ +..+-.+|
T Consensus 121 N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL-----~e~I~~LL 189 (968)
T KOG1060|consen 121 NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL-----EEVIKKLL 189 (968)
T ss_pred cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH-----HHHHHHHh
Confidence 345788888888754 2222212222333455667889999999999999876655544333 45556678
Q ss_pred cCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc---ChhhHHHHHhc-C-
Q 000714 463 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH---SEDIRACVESA-D- 537 (1335)
Q Consensus 463 ~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~---~~~~r~~i~~~-g- 537 (1335)
.+.++.+.-.|+.+.-.+|- +.-+.|. +-...+.++|..-+.--|.-.+..|..-+++ +|..-....+. |
T Consensus 190 aD~splVvgsAv~AF~evCP---erldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~ 264 (968)
T KOG1060|consen 190 ADRSPLVVGSAVMAFEEVCP---ERLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR 264 (968)
T ss_pred cCCCCcchhHHHHHHHHhch---hHHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence 88889999999988888873 3223332 2345566666655555566666666555543 11110000000 0
Q ss_pred -----------------------cHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC-CCcHHHHHHHhcCCCcchHHHHHH
Q 000714 538 -----------------------AVPALLWLLKNGSANGKEIAAKTLNHLIHKSD-TATISQLTALLTSDLPESKVYVLD 593 (1335)
Q Consensus 538 -----------------------~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~-~~~i~~Lv~LL~s~~~~~k~~a~~ 593 (1335)
.++..--++++.++.+--.++.+.|+++-..+ ...+..|+.+|++ +.++|.-+..
T Consensus 265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~ 343 (968)
T KOG1060|consen 265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQ 343 (968)
T ss_pred cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHH
Confidence 01222235566777888888999999976643 3566778888874 4555655555
Q ss_pred HHHHhhhhcCc--------------h-HHHH-------Hhhhh----cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 000714 594 ALKSMLSVVSF--------------S-DILR-------EGSAA----NDAVETMIKILSSTKEETQAKSASALAGIFETR 647 (1335)
Q Consensus 594 aL~~L~~~~~~--------------~-~~~~-------~~i~~----~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~ 647 (1335)
.+..++..... . ..+. ..... ...++.+..+..+.+-.+...+..+|+..+...
T Consensus 344 nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 344 NIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI 423 (968)
T ss_pred HHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh
Confidence 55443221100 0 0000 00001 122344444555555555555555555554432
Q ss_pred hhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccCh
Q 000714 648 KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVR 690 (1335)
Q Consensus 648 ~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~ 690 (1335)
.. +..-.+.-|+.++.+.+..++.+++..+..|...++
T Consensus 424 ~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 424 GS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred Cc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 22 233456778888888888888888888888876554
No 93
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.0072 Score=75.11 Aligned_cols=272 Identities=16% Similarity=0.089 Sum_probs=179.4
Q ss_pred HHHHhcCCHHHHHHhhccCChHHHHHHHHHH-HHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHH-Hhhc
Q 000714 489 WAITAAGGIPPLVQILESGSAKAKEDSASIL-RNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN-HLIH 566 (1335)
Q Consensus 489 ~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL-~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~-~L~~ 566 (1335)
+..+..|.++.+....++.+ |.. ..++...+.-|...++.|+...|+++...+.+..+.+...+|. .+..
T Consensus 463 rk~~~~~~~~~~~svakt~~--------~~~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f 534 (748)
T KOG4151|consen 463 RKRLSLDEDPSCESVAKTVS--------WAKNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF 534 (748)
T ss_pred HHhhccCcchhhhHHHHHHH--------HHHHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC
Confidence 34455666666666554433 222 1222223566777888999999999999999999999999988 3332
Q ss_pred cC--CCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 000714 567 KS--DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIF 644 (1335)
Q Consensus 567 ~~--~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~ 644 (1335)
.. .+.+++++...++.+..... --+.|-.++++++.++..+..+....+++.+-.++..+++..|+.++..+.||.
T Consensus 535 ~~~~~~~v~~~~~s~~~~d~~~~e--n~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl 612 (748)
T KOG4151|consen 535 PGERSYEVVKPLDSALHNDEKGLE--NFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLL 612 (748)
T ss_pred CCCchhhhhhhhcchhhhhHHHHH--HHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHH
Confidence 22 23556666666665543222 224555566677777666666777778888888899999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHH-HhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHH
Q 000714 645 ETRKDLRESSIAVKTLWSVM-KLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATC 723 (1335)
Q Consensus 645 ~~~~~~~~~l~~~g~v~~Lv-~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~ 723 (1335)
.+.--....+++...-.+++ .++....+.....++.++..++..+...+........+...++.++.+++.+++.....
T Consensus 613 ~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 613 WSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred hhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 88333344445544444444 44444444445555555554655443333213455678899999999999999999999
Q ss_pred HHHHHhC-CchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHh
Q 000714 724 ALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLL 770 (1335)
Q Consensus 724 aL~nL~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll 770 (1335)
...|+.. +.+....+.....++.+.++........++.+...|....
T Consensus 693 ~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l~~a~ 740 (748)
T KOG4151|consen 693 IILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCLSAAE 740 (748)
T ss_pred hhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 8888764 6677777778888888877765533335555655555444
No 94
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.078 Score=65.02 Aligned_cols=245 Identities=13% Similarity=0.133 Sum_probs=169.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 492 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~ 492 (1335)
-+-++.+|.++-+.+|+.|+..+..+....++ +++ -+.|.|++-|.++++.++-+|+.++|.|+..+|.+--.
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe---Alr--~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~-- 218 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE---ALR--PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ-- 218 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH---hHh--hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc--
Confidence 34578899999999999999999988776543 343 67899999999999999999999999999888875433
Q ss_pred hcCCHHHHHHhhccCC-hHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHH-HHHHHHHHH--HhhccC
Q 000714 493 AAGGIPPLVQILESGS-AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANG-KEIAAKTLN--HLIHKS 568 (1335)
Q Consensus 493 ~~g~I~~Lv~LL~~~~-~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~-k~~Aa~aL~--~L~~~~ 568 (1335)
.-|.+.++|.+.+ .-+-......+++|+-..|..... .+++|.+++++..... -..+..+.- +++...
T Consensus 219 ---LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 219 ---LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ---ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 2467788887664 445667778888888777766644 5789999998754332 223333322 222221
Q ss_pred -CC-----CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000714 569 -DT-----ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1335)
Q Consensus 569 -~~-----~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~n 642 (1335)
+. -.+..|-.++.++++..|...+-+++.++. .+...+++. -..+++.|.+.++.+|-.|...|..
T Consensus 291 ~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~------kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 291 SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAH------KDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHh------HHHHHHHhccCCchhHHHHHHHHHH
Confidence 22 234556677888888888888777777543 333444332 4567888999999999999999999
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhhcCCh-hHHHHHHHHHHHHHc
Q 000714 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSE-CILVEASRCLAAIFL 687 (1335)
Q Consensus 643 L~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~-~v~~~aa~aL~~L~~ 687 (1335)
+... +|-.. ++..|+.-+...+. .-..+.+.-+..+|.
T Consensus 363 mVsk--kNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 363 MVSK--KNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred Hhhh--hhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 8843 44333 34455555543333 455566666666664
No 95
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.25 E-value=0.00038 Score=54.86 Aligned_cols=38 Identities=26% Similarity=0.189 Sum_probs=35.6
Q ss_pred chhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 000714 444 SLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1335)
Q Consensus 444 ~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs 481 (1335)
++++.+++.|++|+|+++|+++++++++.|+++|+||+
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 45778999999999999999999999999999999997
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.22 E-value=0.072 Score=63.40 Aligned_cols=223 Identities=13% Similarity=0.098 Sum_probs=137.6
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
+.++.++.+..+.++..+..+...|+.++..+++ .+..+||+..|++.+-++..++.+..+.++..+-. +|..|..
T Consensus 108 ~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~y 183 (371)
T PF14664_consen 108 GVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKY 183 (371)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccchhhh
Confidence 4566677777777888999999999999987654 46689999999998887766788888899988884 6887776
Q ss_pred HHhcCCHHHHHHhhccC-------Ch--HHHHHHHHHHHHHhccChhhHHHHHh--cCcHHHHHHHhhcCCHHHHHHHHH
Q 000714 491 ITAAGGIPPLVQILESG-------SA--KAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAK 559 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~-------~~--~v~~~Aa~aL~nL~~~~~~~r~~i~~--~g~i~~Lv~LL~~~~~~~k~~Aa~ 559 (1335)
+...--+..++.-+.+. +. +.-..+..++..+-+. -.---.+.. ..++..|+..|+.+++++|+....
T Consensus 184 l~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs-W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 184 LRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS-WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 65533355554443332 22 2233444555444331 110000111 247889999999999999999999
Q ss_pred HHHHhhccCCCCcHHHH---------------HHHhcC---CC---cchHHHHHHHHHHhhhhcCchHHHHHhhhhcchH
Q 000714 560 TLNHLIHKSDTATISQL---------------TALLTS---DL---PESKVYVLDALKSMLSVVSFSDILREGSAANDAV 618 (1335)
Q Consensus 560 aL~~L~~~~~~~~i~~L---------------v~LL~s---~~---~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i 618 (1335)
.+..+..-..+...... ..+-.. .. |..-..-... +......+-....+.|.+
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l------~~~y~aLll~ili~~gL~ 336 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNL------VNHYLALLLAILIEAGLL 336 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccH------HHHHHHHHHHHHHHcChH
Confidence 99988765533111110 111100 00 0000000000 000111122234567889
Q ss_pred HHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 000714 619 ETMIKILSST-KEETQAKSASALAGIF 644 (1335)
Q Consensus 619 ~~Lv~LL~s~-~~~v~~~Aa~aL~nL~ 644 (1335)
+.|+++..+. ++.+...|...|+++-
T Consensus 337 ~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 337 EALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 9999999876 8888999998888775
No 97
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=1 Score=55.45 Aligned_cols=193 Identities=17% Similarity=0.204 Sum_probs=119.1
Q ss_pred HhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc-cCChHHHHHH
Q 000714 437 KLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDS 515 (1335)
Q Consensus 437 ~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~-~~~~~v~~~A 515 (1335)
+|..+-+...+.+. .++..|-++|.+....++.-|...++.|+. ++.....+... ...++..|+ ..+..++..+
T Consensus 315 ~l~~h~D~e~~ll~--~~~~~Lg~fls~rE~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrra 389 (938)
T KOG1077|consen 315 SLAIHLDSEPELLS--RAVNQLGQFLSHRETNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRA 389 (938)
T ss_pred HHHHHcCCcHHHHH--HHHHHHHHHhhcccccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHH
Confidence 44444444334343 677888899998889999999999999985 45555555554 778888998 5589999999
Q ss_pred HHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccC--CCCcHHHHHHHhcCCCcchHHHHHH
Q 000714 516 ASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS--DTATISQLTALLTSDLPESKVYVLD 593 (1335)
Q Consensus 516 a~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~--~~~~i~~Lv~LL~s~~~~~k~~a~~ 593 (1335)
+..|+.+|. .++.+.| +.-|++.+.+.+...|+.-+--..-|+..- |... ++ .
T Consensus 390 vDLLY~mcD--~~Nak~I-----V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~W-----------------yV-d 444 (938)
T KOG1077|consen 390 VDLLYAMCD--VSNAKQI-----VAELLQYLETADYSIREEIVLKVAILAEKYATDYSW-----------------YV-D 444 (938)
T ss_pred HHHHHHHhc--hhhHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcch-----------------hH-H
Confidence 999999985 4555554 456778888888888765554444444321 2111 11 1
Q ss_pred HHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCC--hHHHHHhhh
Q 000714 594 ALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKT--LWSVMKLLD 668 (1335)
Q Consensus 594 aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~--v~~Lv~LL~ 668 (1335)
++-+|..+++. ..+.+.+-.++... .++++++..|+..+...-.. +...+.+++.|+ +...-.++.
T Consensus 445 viLqLiriagd-------~vsdeVW~RvvQiV-vNnedlq~yaak~~fe~Lq~-~a~hE~mVKvggyiLGEfg~LIa 512 (938)
T KOG1077|consen 445 VILQLIRIAGD-------YVSDEVWYRVVQIV-VNNEDLQGYAAKRLFEYLQK-PACHENMVKVGGYILGEFGNLIA 512 (938)
T ss_pred HHHHHHHHhcc-------cccHHHHHHhheeE-ecchhhhHHHHHHHHHHHhh-hHHHHHHHHhhhhhhhhhhhhhc
Confidence 11112222210 12234455666555 35677777777766665544 556666666654 344444443
No 98
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.62 Score=55.90 Aligned_cols=70 Identities=21% Similarity=0.148 Sum_probs=49.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccCh
Q 000714 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 527 (1335)
Q Consensus 455 I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~ 527 (1335)
.|.|-..|++.-+.++-.++.+++.++..+ ......+ ..+..|-.+|++.....|-.|.++|..|+...|
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~-~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVD-QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCC
Confidence 455666676666788888998888887432 1111211 246677778888888899999999999997543
No 99
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.27 Score=61.47 Aligned_cols=473 Identities=13% Similarity=0.106 Sum_probs=262.3
Q ss_pred CCHHHHHHHhccCChhHHHHHH-HHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHH
Q 000714 196 GGIDILVKLLTLGQSSTQAHVC-FLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1335)
Q Consensus 196 g~I~~Lv~lL~s~~~~v~~~aa-~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r 274 (1335)
|.++.+-+-+.+....-+..+. ++++.+..+ .+. ....+.+++.....+ .+.+..+-.-|.+-+...++..
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G-~Dv------SslF~dvvk~~~T~d-lelKKlvyLYl~nYa~~~P~~a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVG-KDV------SSLFPDVVKCMQTRD-LELKKLVYLYLMNYAKGKPDLA 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccC-cch------HhhhHHHHhhcccCC-chHHHHHHHHHHHhhccCchHH
Confidence 3444444444433334444444 344444333 222 456778888888775 5888877777777776554422
Q ss_pred HHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHh
Q 000714 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMI 354 (1335)
Q Consensus 275 ~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~ 354 (1335)
.+++..++.=..++ ++.++-.|++.+..+.. +.++ .|
T Consensus 85 -----~~avnt~~kD~~d~---------np~iR~lAlrtm~~l~v--~~i~-----------------------ey---- 121 (734)
T KOG1061|consen 85 -----ILAVNTFLKDCEDP---------NPLIRALALRTMGCLRV--DKIT-----------------------EY---- 121 (734)
T ss_pred -----HhhhhhhhccCCCC---------CHHHHHHHhhceeeEee--hHHH-----------------------HH----
Confidence 23344444433332 35666555555443321 1111 11
Q ss_pred hcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHH
Q 000714 355 YDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRA 434 (1335)
Q Consensus 355 l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 434 (1335)
+...+.+.++...+ .+|..++-..++++..+ .+.....|.+..|..++.+.++.|..+|+.+
T Consensus 122 ---------------~~~Pl~~~l~d~~~-yvRktaa~~vakl~~~~--~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaa 183 (734)
T KOG1061|consen 122 ---------------LCDPLLKCLKDDDP-YVRKTAAVCVAKLFDID--PDLVEDSGLVDALKDLLSDSNPMVVANALAA 183 (734)
T ss_pred ---------------HHHHHHHhccCCCh-hHHHHHHHHHHHhhcCC--hhhccccchhHHHHHHhcCCCchHHHHHHHH
Confidence 12234444444444 47888888888887643 2244457888999999999999999999999
Q ss_pred HHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHH
Q 000714 435 LLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKED 514 (1335)
Q Consensus 435 L~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~ 514 (1335)
|..+...+.+.........-+..++..+..-++--|.....++.+-...++ +.+. ..+..+...|.+.++.+...
T Consensus 184 L~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~Lqh~n~avvls 258 (734)
T KOG1061|consen 184 LSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRLQHANSAVVLS 258 (734)
T ss_pred HHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhhccCCcceEee
Confidence 999977665311111111222333333332233233333333333322111 1111 13445666677777777778
Q ss_pred HHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHH-HhcCCCc--chHHHH
Q 000714 515 SASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA-LLTSDLP--ESKVYV 591 (1335)
Q Consensus 515 Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~-LL~s~~~--~~k~~a 591 (1335)
+..++.++...-++....+. ....++|+.++.... +.+-.+.+-+.-+....+ .....-+. ++-..++ .+|..=
T Consensus 259 avKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p-~~~~~~~~~Ff~kynDPiYvK~eK 335 (734)
T KOG1061|consen 259 AVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLILQKRP-EILKVEIKVFFCKYNDPIYVKLEK 335 (734)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHHHhCh-HHHHhHhHeeeeecCCchhhHHHH
Confidence 88888887765333222222 235577777777655 444333333322222211 11111111 1111111 234333
Q ss_pred HHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCC
Q 000714 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS 671 (1335)
Q Consensus 592 ~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~ 671 (1335)
.+++-.+++..+.. ..+..+..+-..-+.+..+.+.+++++++...++. .+.+..|++++.-..
T Consensus 336 leil~~la~~~nl~----------qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~~ 399 (734)
T KOG1061|consen 336 LEILIELANDANLA----------QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETKV 399 (734)
T ss_pred HHHHHHHhhHhHHH----------HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhcc
Confidence 44444432221111 13666666777778999999999999998664432 678999999999888
Q ss_pred hhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcC-CCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHH
Q 000714 672 ECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRV 750 (1335)
Q Consensus 672 ~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~l 750 (1335)
+-++.++...+..+++..|..-+ ..++.+..-+.+ .+++.|..-+|.+..-+..-+...++ +.-+.+-
T Consensus 400 ~yvvqE~~vvi~dilRkyP~~~~------~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~el-----L~~f~en 468 (734)
T KOG1061|consen 400 DYVVQEAIVVIRDILRKYPNKYE------SVVAILCENLDSLQEPEAKAALIWILGEYAERIENALEL-----LESFLEN 468 (734)
T ss_pred cceeeehhHHHHhhhhcCCCchh------hhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHH-----HHHHHhh
Confidence 88888999899888877664332 345566666665 67788888888999888766666665 1223333
Q ss_pred hhcCChhhHHHHHHHHHHHhhc
Q 000714 751 LCEGTISGKTLAAAAIARLLHS 772 (1335)
Q Consensus 751 l~~~~~~~k~~A~~aL~~Ll~~ 772 (1335)
..+...+++-.=-.+.+++.-.
T Consensus 469 ~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 469 FKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred cccchHHHHHHHHHHHHHHHhc
Confidence 3344444555555555554433
No 100
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.12 Score=60.33 Aligned_cols=260 Identities=14% Similarity=0.146 Sum_probs=168.1
Q ss_pred HHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhc-CChHHHHHHhhcC
Q 000714 85 AATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE-GVVPVLWEQLKNG 163 (1335)
Q Consensus 85 aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~-G~Ip~Lv~LL~~~ 163 (1335)
...-+..++.-|+....+++.++|+.|+.+|.+++.++-...+..|..+.. .+. +.+. .+-..|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD----~Dv----~~es~egAevLid----- 170 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTD----EDV----LYESEEGAEVLID----- 170 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhh----hcc----cccccccHHHHHH-----
Confidence 445566677778999999999999999999999999998888888888876 211 1111 11122222
Q ss_pred CCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHH------HHHHHHHHHHhhcCcchhhhHhcc
Q 000714 164 LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQ------AHVCFLLACMMEEDVSVCSRVLAA 237 (1335)
Q Consensus 164 ~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~------~~aa~~L~~La~~~~~~~~~i~~~ 237 (1335)
++++.+.++.|++-+..-+.+++ ..+...+-|+..-.+..+.++++.
T Consensus 171 ---------------------------aLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~ 223 (536)
T KOG2734|consen 171 ---------------------------ALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ 223 (536)
T ss_pred ---------------------------HHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh
Confidence 23444455555554443333332 234455556666666677777888
Q ss_pred ccHHHHHHHhcCC-CCHHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHH
Q 000714 238 DATKQLLKLLGSG-NEASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALAN 316 (1335)
Q Consensus 238 g~i~~Lv~lL~s~-~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~n 316 (1335)
|.+..|+.-+... .-..-+..|..+|.-+-..+.+++..+....|+..+++-+.-- +
T Consensus 224 ~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~y-------------k--------- 281 (536)
T KOG2734|consen 224 GLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVY-------------K--------- 281 (536)
T ss_pred hHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchh-------------h---------
Confidence 8888887744332 2235678888888887777777888888888888887754210 0
Q ss_pred hhcCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHH
Q 000714 317 ISGGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALAS 396 (1335)
Q Consensus 317 Ls~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~ 396 (1335)
.++|. ..+...+-++...+|+.
T Consensus 282 ---------------~~dP~-------------------------------------------~~~E~EmmeNLFdcLCs 303 (536)
T KOG2734|consen 282 ---------------RHDPA-------------------------------------------TVDEEEMMENLFDCLCS 303 (536)
T ss_pred ---------------ccCCC-------------------------------------------CcCHHHHHHHHHHHHHH
Confidence 00110 01112234555667777
Q ss_pred HhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccC--chhHHHhhcccHHHHHH-HhcCC
Q 000714 397 LYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG--SLWRALQGREGIQLLIS-LLGLS 465 (1335)
Q Consensus 397 L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~--~~~~~i~~~g~I~~Lv~-lL~~~ 465 (1335)
+...+.++.++...++++...-+++. ....+..+.+.|-....+.+ .++...++..|...+.. +++.+
T Consensus 304 ~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p 374 (536)
T KOG2734|consen 304 LLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTP 374 (536)
T ss_pred HhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCc
Confidence 77788888899888888876666655 33556778888888877776 55666777888777665 44433
No 101
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.04 E-value=0.051 Score=66.55 Aligned_cols=254 Identities=16% Similarity=0.118 Sum_probs=163.1
Q ss_pred HHHHHHhCCcchhhhhcccccHHHHHHHH----------cCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHH
Q 000714 392 EALASLYGNPLLSIKLENSEAKRLLVGLI----------TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL 461 (1335)
Q Consensus 392 ~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL----------~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l 461 (1335)
.+|.-+.+++.....+....++..|..+- ...++.+...|.+||+|+...++..++...+.|+.+.++..
T Consensus 3 ~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~ 82 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCER 82 (446)
T ss_pred HHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHH
Confidence 44555566777777777777777776654 33567899999999999999998888889999999999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHhccCChHhHHHHHh-cCCHHHHHHhhccC-----------------ChHHHHHHHHH
Q 000714 462 LGLS-----SEQQQECSVALLCLLSNENDDSKWAITA-AGGIPPLVQILESG-----------------SAKAKEDSASI 518 (1335)
Q Consensus 462 L~~~-----~~~v~~~A~~aL~nLs~~~~~~r~~i~~-~g~I~~Lv~LL~~~-----------------~~~v~~~Aa~a 518 (1335)
|+.. +.++.......|..++....+.+..+++ .+++..++..|... +......+..+
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKl 162 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKL 162 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHH
Confidence 9876 6788999999998888767777766665 47777777755421 12234467788
Q ss_pred HHHHhccChhhHHHHHhcCcHHHHHHHhhcC---------CHHHHHHHHHHHHHhhcc-------------------CCC
Q 000714 519 LRNLCNHSEDIRACVESADAVPALLWLLKNG---------SANGKEIAAKTLNHLIHK-------------------SDT 570 (1335)
Q Consensus 519 L~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~---------~~~~k~~Aa~aL~~L~~~-------------------~~~ 570 (1335)
++|+..+.+.... =.....++.|+.++..- ......++..+|.++-.. .+.
T Consensus 163 lFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~ 241 (446)
T PF10165_consen 163 LFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNM 241 (446)
T ss_pred HHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCCh
Confidence 8999876443332 11234566666665432 123467788888877211 011
Q ss_pred CcHHHHHHHhcCC----C-cchHHHHHHHHHHhhhhcCchHHHHHhhh---------------h-cchHHHHHHhhcCCC
Q 000714 571 ATISQLTALLTSD----L-PESKVYVLDALKSMLSVVSFSDILREGSA---------------A-NDAVETMIKILSSTK 629 (1335)
Q Consensus 571 ~~i~~Lv~LL~s~----~-~~~k~~a~~aL~~L~~~~~~~~~~~~~i~---------------~-~~~i~~Lv~LL~s~~ 629 (1335)
..+..|+.+|... . .+..+...-.+.-|..+......+|..+. . ...-..|++++++..
T Consensus 242 ~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~ 321 (446)
T PF10165_consen 242 DVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD 321 (446)
T ss_pred HHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC
Confidence 3455566665321 1 11112222222222222222122222221 1 234568999999988
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000714 630 EETQAKSASALAGIFET 646 (1335)
Q Consensus 630 ~~v~~~Aa~aL~nL~~~ 646 (1335)
+.++..++..|..||..
T Consensus 322 ~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 322 PQLKDAVAELLFVLCKE 338 (446)
T ss_pred chHHHHHHHHHHHHHhh
Confidence 99999999999999955
No 102
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.94 E-value=0.0027 Score=58.99 Aligned_cols=86 Identities=27% Similarity=0.412 Sum_probs=69.9
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHH
Q 000714 455 IQLLISLL-GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1335)
Q Consensus 455 I~~Lv~lL-~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i 533 (1335)
||.|++.| +++++.++..++.+|+.+.. ++ .++.|+++++++++.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~~---------~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--PE---------AIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--HH---------HHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68899988 88899999999999997652 33 58999999999999999999999998843
Q ss_pred HhcCcHHHHHHHhhcCCH-HHHHHHHHHHH
Q 000714 534 ESADAVPALLWLLKNGSA-NGKEIAAKTLN 562 (1335)
Q Consensus 534 ~~~g~i~~Lv~LL~~~~~-~~k~~Aa~aL~ 562 (1335)
..+++.|.+++++.+. .+|..|+.+|.
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3478999999888654 45787877763
No 103
>PRK14707 hypothetical protein; Provisional
Probab=96.90 E-value=3.8 Score=56.63 Aligned_cols=694 Identities=18% Similarity=0.131 Sum_probs=319.4
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc--CCHHHHHHHHHHHHH-hhcCchhHHHHHhcCCcHHHH
Q 000714 36 VQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS--GSLAVKIQAATVLGS-LCKENELRVKVLLGGCIPPLL 112 (1335)
Q Consensus 36 ~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s--~~~~vk~~aa~~L~~-L~~~~~~~~~i~~~g~I~~Lv 112 (1335)
..+.+.+...|..+-...+..+.-+ +.++|..++.-+.. ++++.+. ++..|.. ++.+...+.. +...++...+
T Consensus 178 ~~~c~~aa~~la~~~~~~d~~~~~~--~~q~ia~~lNa~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~-~~~q~va~~l 253 (2710)
T PRK14707 178 NPDCQAVAPRFAALVASDDRLRSAM--DAQGVATVLNALCKWPDTPDCGN-AVSALAERLADESRLRNE-LKPQELGNAL 253 (2710)
T ss_pred CchHHHHHHHHHHHhcCChhhhccc--chHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHcCcHHHHHh-CChHHHHHHH
Confidence 3456777777766654455666655 36677777777753 5566654 5555555 5555444333 3333455555
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHH
Q 000714 113 GLLK-SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 191 (1335)
Q Consensus 113 ~lL~-s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~ 191 (1335)
..|+ -++.....+|+.+|..--. ++.+...-...-.+-..++-|+.-.+... .+..+...-..|.. .... ..
T Consensus 254 N~lsKwp~~~~C~~a~~~lA~rl~----~~~~l~~al~~q~vanalNalSKwpd~~v-c~~Aa~~la~rl~~-d~~l-~~ 326 (2710)
T PRK14707 254 NALSKWADTPVCAAAASALAERLV----DDPGLRKALDPINVTQALNALSKWADLPV-CAEAAIALAERLAD-DPEL-CK 326 (2710)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHh----hhHHHHHhcCHHHHHHHHhhhhcCCCchH-HHHHHHHHHHHHhc-cHhh-hh
Confidence 5554 4555566666666644333 22221111111123334444444433321 22222222223332 1111 12
Q ss_pred HHhcCCHHHHHHHhcc-CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC
Q 000714 192 TVQAGGIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1335)
Q Consensus 192 i~~~g~I~~Lv~lL~s-~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~ 270 (1335)
-.+..++...+..|+. ++..+-..++..|+-=...++.-+.. .+..++...++-|+.-.+..+-..|+..|..=-..+
T Consensus 327 ~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d 405 (2710)
T PRK14707 327 ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDD 405 (2710)
T ss_pred ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC
Confidence 3345566666777765 34444555666665333333333333 346677778888877666567777777775433367
Q ss_pred HHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCc---------hhhhh---hcccccCCCCh
Q 000714 271 KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLS---------NVISS---LGQSLESCSSP 338 (1335)
Q Consensus 271 ~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~---------~~i~~---L~~l~~~~~~~ 338 (1335)
.+.++.+-..|.-..|-.+-+=|. ..+...++.+|+---.... ++... +.+..+++.
T Consensus 406 ~~l~~~~~~Q~van~lnalsKWPd---------~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~-- 474 (2710)
T PRK14707 406 LELRKGLDPQGVSNALNALAKWPD---------LPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPI-- 474 (2710)
T ss_pred hhhhhhcchhhHHHHHHHhhcCCc---------chhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChh--
Confidence 888888877666666555544443 3444455544443211110 11112 222222221
Q ss_pred hHHHhHhh-hhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHH
Q 000714 339 AQVADTLG-ALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLV 417 (1335)
Q Consensus 339 ~~i~~~~G-al~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv 417 (1335)
+| +..++...+-....-.+.+++..+...|-.|.+-.+.....+.+......+.........+...+....+-
T Consensus 475 ------c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~ln 548 (2710)
T PRK14707 475 ------CGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLK 548 (2710)
T ss_pred ------HHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHH
Confidence 11 11122222222222345678888777777776655543222222222233332333333333333333333
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcC-CC-HHHHHHHHHHHHHhccCChHhHHHHHhcC
Q 000714 418 GLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL-SS-EQQQECSVALLCLLSNENDDSKWAITAAG 495 (1335)
Q Consensus 418 ~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~-~~-~~v~~~A~~aL~nLs~~~~~~r~~i~~~g 495 (1335)
.+-+..+....+.++..|..+..........+ +...|..++..|+. ++ ...++.+.++-..+.. .+..+..+- .-
T Consensus 549 alSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~-~q 625 (2710)
T PRK14707 549 ALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD-PV 625 (2710)
T ss_pred hhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc-HH
Confidence 34344555666677777777665544433333 35667778877763 33 3444444444445543 344333332 22
Q ss_pred CHHHHHHhhcc-CChHHHHHHHHHH-HHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHH-hhccCC---
Q 000714 496 GIPPLVQILES-GSAKAKEDSASIL-RNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH-LIHKSD--- 569 (1335)
Q Consensus 496 ~I~~Lv~LL~~-~~~~v~~~Aa~aL-~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~-L~~~~~--- 569 (1335)
.+..+++-|.+ +....-+.++..| ..+.. +...+..+-..+.-..|=.+-+-.+...-+.|+..|.. |.....
T Consensus 626 ~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~-~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~Lr~ 704 (2710)
T PRK14707 626 DVTNVLNALSKWPGTEVCAEVARLLAGRLVG-DRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAERLAADPGLRK 704 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhhh-chhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChhhHh
Confidence 34445554432 2333333343333 33443 24444444333322333333333444444445555543 222211
Q ss_pred ---CCcHHHHHHHhcC--CCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcC-CCHHHHHHHHHHHH-H
Q 000714 570 ---TATISQLTALLTS--DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEETQAKSASALA-G 642 (1335)
Q Consensus 570 ---~~~i~~Lv~LL~s--~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s-~~~~v~~~Aa~aL~-n 642 (1335)
+..+...+.-|.. +.+..+ .++..|+.- +...+.. +..+. ...+.-.+.-|+. .++.....|+.+|+ .
T Consensus 705 al~pQ~vAN~LNALSKWP~~~~Cr-~AA~~LA~r--L~~~p~l-~~a~~-aQevANaLNALSKWPd~~~C~~AA~aLA~r 779 (2710)
T PRK14707 705 ELNPVDVANALNALSKWPRTPVCA-AVASALAAR--VVAEPRL-RKAFD-AQQVATALNALSKWPDNQACAAAANTLAER 779 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCcHHHH-HHHHHHHHH--HhcChhh-hhhcC-HHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 1122222222221 111111 111222211 1111111 11121 1223333333322 34444555555555 3
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhhc-CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHH-HhcCCCHHHHHH
Q 000714 643 IFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV-LAGSPVLEVAEQ 720 (1335)
Q Consensus 643 L~~~~~~~~~~l~~~g~v~~Lv~LL~~-~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~vk~~ 720 (1335)
+... ++.+..+ ....+...+.-|+. ........++.+|..-+..++.-.. -++...|...+. +-|-+....-..
T Consensus 780 La~~-~~Lr~aL-~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~--af~AQ~VANaLNALSKWPd~~~Cr~ 855 (2710)
T PRK14707 780 QLRE-PDVRDVL-KPREMTNALNALSKWPDTPACAAAASALAARVADDPRLRE--AFDVQHVATVLNAMSKWPDNAVCAA 855 (2710)
T ss_pred HhhC-cchhhhc-CHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHH--hcCHHHHHHHHHHhccCCCchHHHH
Confidence 3333 4433322 11223333333433 3444556666666655544443322 234444444444 445577777788
Q ss_pred HHHHHHHH-hCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 000714 721 ATCALANL-ILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1335)
Q Consensus 721 Aa~aL~nL-~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~ 771 (1335)
|+.+|+.- ..++..+..+-..++...|-.+.+=........|+.+|..-+.
T Consensus 856 AA~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~ 907 (2710)
T PRK14707 856 AAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLA 907 (2710)
T ss_pred HHHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHh
Confidence 88888754 4566665555444445555555554555566677777776664
No 104
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.87 E-value=0.005 Score=57.18 Aligned_cols=86 Identities=26% Similarity=0.342 Sum_probs=70.2
Q ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHH
Q 000714 413 KRLLVGLI-TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1335)
Q Consensus 413 i~~Lv~lL-~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i 491 (1335)
++.|++.| ++.++.+|..++.+|..+. +...++.|+++++++++.++..|+.+|..+.. ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~----- 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--PE----- 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH-----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH-----
Confidence 57788888 8889999999999998442 12569999999999999999999999999862 33
Q ss_pred HhcCCHHHHHHhhccC-ChHHHHHHHHHHH
Q 000714 492 TAAGGIPPLVQILESG-SAKAKEDSASILR 520 (1335)
Q Consensus 492 ~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~ 520 (1335)
+++.|.+++.+. +..+|..|+.+|+
T Consensus 63 ----~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 ----AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 889999999886 4556888888874
No 105
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=2.8 Score=54.50 Aligned_cols=243 Identities=12% Similarity=0.044 Sum_probs=135.7
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCC-HHHHHHHHHHHHHhccCChHhHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSS-EQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
+.+..|...+++.+..++..|++.+..++..-+ ..+. ...|...++++...+ +..--.++-+|+.|+...--.-.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 456677778888888999999998888876654 2233 356777777665433 45555777788888742111011
Q ss_pred HHHhcCCHHHHHHhhcc--------CChHHHHHHHHHHHHHhccChh--hHHHHHhcCcHHHHHHHhhcCCHHHHHHHHH
Q 000714 490 AITAAGGIPPLVQILES--------GSAKAKEDSASILRNLCNHSED--IRACVESADAVPALLWLLKNGSANGKEIAAK 559 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~--------~~~~v~~~Aa~aL~nL~~~~~~--~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~ 559 (1335)
.+. ..+|.+++-|.- ....+|..|+.++|.+++.... .+. +.+.=.--.|+..+-+...+.|+.|..
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 111 134555544431 1457899999999999875221 122 222111223344556667788998888
Q ss_pred HHHHhhcc-CCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhc-chHHHHHH-h----hcCCCHHH
Q 000714 560 TLNHLIHK-SDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAAN-DAVETMIK-I----LSSTKEET 632 (1335)
Q Consensus 560 aL~~L~~~-~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~-~~i~~Lv~-L----L~s~~~~v 632 (1335)
++-..... ++. +.=+.++..-+.-....-.+|-..++. .++.. +...++++ + +.+=++++
T Consensus 494 AlqE~VGR~~n~---p~Gi~Lis~~dy~sV~~rsNcy~~l~~----------~ia~~~~y~~~~f~~L~t~Kv~HWd~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF---PHGISLISTIDYFSVTNRSNCYLDLCV----------SIAEFSGYREPVFNHLLTKKVCHWDVKI 560 (1133)
T ss_pred HHHHHhccCCCC---CCchhhhhhcchhhhhhhhhHHHHHhH----------HHHhhhhHHHHHHHHHHhcccccccHHH
Confidence 88766544 321 111122222111111111122222221 12111 12223332 2 33448999
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHH
Q 000714 633 QAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVE 677 (1335)
Q Consensus 633 ~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~ 677 (1335)
++.++++|.+|+...++ ....+..++++......+...+.-
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g 601 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHG 601 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhh
Confidence 99999999999877554 345677888888887766654443
No 106
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=0.74 Score=61.34 Aligned_cols=447 Identities=16% Similarity=0.146 Sum_probs=218.7
Q ss_pred HHHHHHhccCChhHHHHHH-HHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHH---hcccCCHHHH
Q 000714 199 DILVKLLTLGQSSTQAHVC-FLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALK---SLSDHCKDAR 274 (1335)
Q Consensus 199 ~~Lv~lL~s~~~~v~~~aa-~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~---nLs~~~~e~r 274 (1335)
..|...+.++++..|...+ |+|.-.-+.....-..........++..+|.+.++ -.|..|++-|+ .|. +...+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dE-f~QDvAsrGlglVYelg--d~~~k 897 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDE-FSQDVASRGLGLVYELG--DSSLK 897 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHH-HHHHHHhcCceEEEecC--CchhH
Confidence 3455566677777776544 33332211110010111223344788888988765 66777776664 343 23344
Q ss_pred HHHHHCCChHHHHHHhcCCCccc------------------hhhhhHHHHHHHHHHHHHHhhc--CCchhhhhhcccccC
Q 000714 275 REIAGSNGIPAMINATIAPSKEF------------------MQGEYAQALQENAMCALANISG--GLSNVISSLGQSLES 334 (1335)
Q Consensus 275 ~~i~~~Ggi~~Lv~lL~~~~~e~------------------~~~~~d~~v~~~A~~aL~nLs~--g~~~~i~~L~~l~~~ 334 (1335)
+-++ ..|++-+..+.... ..+..-..++ =|+||+. |.+.++..+.++.+.
T Consensus 898 ~~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYK-----ELc~LASdl~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 898 KSLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYK-----ELCNLASDLGQPDLVYKFMQLANH 967 (1702)
T ss_pred HHHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHH-----HHHHHHhhcCChHHHHHHHHHhhh
Confidence 4333 34444443332100 0000012222 3566665 678888888888777
Q ss_pred CC---ChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCC--CchhHHHHHHHHHHH-HhCCcchhhhhc
Q 000714 335 CS---SPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPR--LPFLVQERTIEALAS-LYGNPLLSIKLE 408 (1335)
Q Consensus 335 ~~---~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~--~~~~~q~~aa~aL~~-L~~~~~~~~~i~ 408 (1335)
.- ++.-.+.-.|+|..-- .....| ..-.++-+|.+.. ++..+|. +...+.+ |..++..-....
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a---------~~kl~p-~l~kLIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y 1036 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQA---------GEKLEP-YLKKLIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEY 1036 (1702)
T ss_pred hchhhcccchhhchHHHHHHH---------HHhhhh-HHHHhhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHH
Confidence 53 3444444444443210 000111 0111222333332 3333433 2222222 222322111111
Q ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHH----HHHHhcCCCHHHHHHHHH---HHHHhc
Q 000714 409 NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQL----LISLLGLSSEQQQECSVA---LLCLLS 481 (1335)
Q Consensus 409 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~----Lv~lL~~~~~~v~~~A~~---aL~nLs 481 (1335)
-.+....|+.-|.+..+.+|+.++.+|..|-.+++... +. +-+|. +.+.+.+=.+.+++.|-. +|..|+
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~--~~--e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ--VK--EKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14566677777788899999999999999988765421 22 22333 334444334556665544 444332
Q ss_pred c---CCh---HhHHHHHhcCCHHHHHH--hhccCChHHHHHHHHHHHHHhccChh-hHHHHHhcCcHHHHHHHhhcCCHH
Q 000714 482 N---END---DSKWAITAAGGIPPLVQ--ILESGSAKAKEDSASILRNLCNHSED-IRACVESADAVPALLWLLKNGSAN 552 (1335)
Q Consensus 482 ~---~~~---~~r~~i~~~g~I~~Lv~--LL~~~~~~v~~~Aa~aL~nL~~~~~~-~r~~i~~~g~i~~Lv~LL~~~~~~ 552 (1335)
. +.. ..++.+ ..++|.|+. .+ +.-+++|..+..++..|+.++.. .+..+ ...+|.|++....-.+.
T Consensus 1113 vr~~d~~~~~~~~~~l--~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~ 1187 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEAL--DIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQ 1187 (1702)
T ss_pred hhhcccCCcccHHHHH--HHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchH
Confidence 1 111 112222 124554443 23 44578999999999999986432 22222 23566666665544433
Q ss_pred H-----------HHHHHHHHHHhhccC--------------CC----CcHHHHHHHhcCC-CcchHHHHHHHHHHhhhhc
Q 000714 553 G-----------KEIAAKTLNHLIHKS--------------DT----ATISQLTALLTSD-LPESKVYVLDALKSMLSVV 602 (1335)
Q Consensus 553 ~-----------k~~Aa~aL~~L~~~~--------------~~----~~i~~Lv~LL~s~-~~~~k~~a~~aL~~L~~~~ 602 (1335)
+ ...|...+..=...+ |. .-++.+.++++++ .-.+|..++..+..+..--
T Consensus 1188 vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~ 1267 (1702)
T KOG0915|consen 1188 VLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRL 1267 (1702)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHh
Confidence 2 122222222222111 21 2344566677665 3456777777666543211
Q ss_pred CchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-HHHHHhcCChHHHHHhhhcCChhHHHHHHHH
Q 000714 603 SFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-RESSIAVKTLWSVMKLLDVGSECILVEASRC 681 (1335)
Q Consensus 603 ~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~-~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~a 681 (1335)
.. + -..-..+.+..+...+++.++.+++..+.+.+.|..-..+. ... .+..++..+-...+....-++..
T Consensus 1268 ~~-e---mtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qK-----Lie~~l~~~l~k~es~~siscat 1338 (1702)
T KOG0915|consen 1268 GS-E---MTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQK-----LIETLLADLLGKDESLKSISCAT 1338 (1702)
T ss_pred cc-c---cCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHH-----HHHHHHHHHhccCCCccchhHHH
Confidence 10 0 00111334666666777889999999999999998765552 222 23344444433333333444545
Q ss_pred HHHHHc
Q 000714 682 LAAIFL 687 (1335)
Q Consensus 682 L~~L~~ 687 (1335)
+.++..
T Consensus 1339 is~Ian 1344 (1702)
T KOG0915|consen 1339 ISNIAN 1344 (1702)
T ss_pred HHHHHH
Confidence 554543
No 107
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.046 Score=69.29 Aligned_cols=247 Identities=13% Similarity=0.095 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHhCCcchhhhhc----ccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHh
Q 000714 387 QERTIEALASLYGNPLLSIKLE----NSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 462 (1335)
Q Consensus 387 q~~aa~aL~~L~~~~~~~~~i~----~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL 462 (1335)
|.+=.+||.-|++.-+...|-. .-|.+|..++||+++..+.|.-.+-.+..+..-++..+..+++.+|-...++.|
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 4444555655555444433332 258889999999999999998888888887766677777788888888888888
Q ss_pred cC-C--CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCc
Q 000714 463 GL-S--SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADA 538 (1335)
Q Consensus 463 ~~-~--~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~ 538 (1335)
.. + +++.+..|+.+|+-+....+-.+....+.+.|......|.++ .+-.+..++-+|+.|-.+.++.|=.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 75 2 458899999999999977777788888889999999999886 5788999999999999877777766667889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchH
Q 000714 539 VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAV 618 (1335)
Q Consensus 539 i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i 618 (1335)
.+.|+.++.+..+++|..|.-+|..+....... .++.....-+-+. +...+..+...+ ..+.
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~------------fde~~~~~~~~~~----l~~~~~~~E~~i--~~~~ 705 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN------------FDEQTLVVEEEID----LDDERTSIEDLI--IKGL 705 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccc------------cchhhhhhhhhhc----chhhhhhHHHHH--HhhH
Confidence 999999999999999999999999997643100 1111111100000 000000001101 1123
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhH
Q 000714 619 ETMIKILSSTKEETQAKSASALAGIFETRKDLR 651 (1335)
Q Consensus 619 ~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~ 651 (1335)
-.++.+++.+++.++...+.+|.....++..+-
T Consensus 706 ~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 706 MSLLALVSDGSPLVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHHHh
Confidence 477788899999999999999999988755443
No 108
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.0056 Score=72.07 Aligned_cols=302 Identities=15% Similarity=0.169 Sum_probs=177.5
Q ss_pred HHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHH
Q 000714 175 TGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEAS 254 (1335)
Q Consensus 175 ~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~ 254 (1335)
+..|..++.+-...+--+.+...++.|+++|+.++.-+.-.+...++|+....+.-+..+.+.|.+..|+.++.+.++ .
T Consensus 410 ~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd-a 488 (743)
T COG5369 410 VLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD-A 488 (743)
T ss_pred HHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh-h
Confidence 445556654433333446678899999999999777777777788888887776678889999999999999998866 8
Q ss_pred HHHHHHHHHHhcccCCHHH-HHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhccccc
Q 000714 255 VRAEAAGALKSLSDHCKDA-RREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLE 333 (1335)
Q Consensus 255 vr~~Aa~aL~nLs~~~~e~-r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~ 333 (1335)
.|....+.|+++-.++.++ +-.+...-|+..++.+..+| +..+|+++...|.|+.+..+.
T Consensus 489 Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp---------c~~vq~q~lQilrNftc~~~k---------- 549 (743)
T COG5369 489 LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP---------CFKVQHQVLQILRNFTCDTSK---------- 549 (743)
T ss_pred hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc---------ccccHHHHHHHHHhccccccc----------
Confidence 9999999999999766543 34566777899999998886 488999999999999873221
Q ss_pred CCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchh-hHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhccc-c
Q 000714 334 SCSSPAQVADTLGALASALMIYDSKAESTKPSDPLI-VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENS-E 411 (1335)
Q Consensus 334 ~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~-i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~-g 411 (1335)
+.+++. + .....|.. +-..|.+.++...+...++..-....+.+.++..+..+.+. .
T Consensus 550 nEkskd--------------v-------~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~ 608 (743)
T COG5369 550 NEKSKD--------------V-------FIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQED 608 (743)
T ss_pred ccccce--------------e-------EEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHH
Confidence 000000 0 00112222 34556666666666666666444444445566665555443 2
Q ss_pred cHHHHHHHHc----C-----C--CHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc----CCCHHHHHHHHHH
Q 000714 412 AKRLLVGLIT----M-----A--TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG----LSSEQQQECSVAL 476 (1335)
Q Consensus 412 ~i~~Lv~lL~----~-----~--~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~----~~~~~v~~~A~~a 476 (1335)
.+..+...|- . + +..+--.-.....++..+.+...+.+... |++= ..+ .++++.-.+..|.
T Consensus 609 ~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~---p~~D-~~~~d~~~~NdE~~~agiw~ 684 (743)
T COG5369 609 MLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTT---PHLD-NMKKDSTTRNDELSIAGIWI 684 (743)
T ss_pred HHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecC---CCcc-ccccccCCCchhhhhccceE
Confidence 2222222221 1 0 00010011111122222222221111100 1111 112 1244566677777
Q ss_pred HHHhccCChH---------hHHHH-HhcCCHHHHHHhhccCChHHHHHHHHHHHHH
Q 000714 477 LCLLSNENDD---------SKWAI-TAAGGIPPLVQILESGSAKAKEDSASILRNL 522 (1335)
Q Consensus 477 L~nLs~~~~~---------~r~~i-~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL 522 (1335)
..|+.. ..+ .|..+ .+.|.-.-++.+..+.++.+++.+-.+|.++
T Consensus 685 ~in~~w-~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 685 IINLSW-KEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred EEeccc-CccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 777652 111 23333 4444444455555566789999999999886
No 109
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.7 Score=53.76 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=62.9
Q ss_pred CCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHH
Q 000714 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR 275 (1335)
Q Consensus 196 g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~ 275 (1335)
..+..|.++|.+....+|--+...++.|++.. .....+... ...++..|+...|..+|..|...|..+| +.+|-+
T Consensus 329 ~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~-~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mc--D~~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHRETNIRYLALESMCKLASSE-FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMC--DVSNAK 403 (938)
T ss_pred HHHHHHHHHhhcccccchhhhHHHHHHHHhcc-chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHh--chhhHH
Confidence 45777888888888888888888888777552 244444333 6788888987777899999999999999 456666
Q ss_pred HHHHCCChHHHHHHhcC
Q 000714 276 EIAGSNGIPAMINATIA 292 (1335)
Q Consensus 276 ~i~~~Ggi~~Lv~lL~~ 292 (1335)
.|++ -|+..|.+
T Consensus 404 ~IV~-----elLqYL~t 415 (938)
T KOG1077|consen 404 QIVA-----ELLQYLET 415 (938)
T ss_pred HHHH-----HHHHHHhh
Confidence 5544 35555544
No 110
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=96.75 E-value=0.22 Score=54.78 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=133.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhhHHH
Q 000714 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRAC 532 (1335)
Q Consensus 455 I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~ 532 (1335)
+..+.+...+++...+...+.+|..... ..+++.|+..|... .+-+|..|+.+|+++. +
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~------- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D------- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-------
Confidence 4555555544444444455555554442 23677777766654 4566777777777776 3
Q ss_pred HHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC--------------C------CcHHHHHHHhcCCCcc-hHHHH
Q 000714 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--------------T------ATISQLTALLTSDLPE-SKVYV 591 (1335)
Q Consensus 533 i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~--------------~------~~i~~Lv~LL~s~~~~-~k~~a 591 (1335)
....+.+-++.++....+++.+..++..+-.... + +.+..+...|.+.+.. ...+
T Consensus 99 ---~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry- 174 (289)
T KOG0567|consen 99 ---PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY- 174 (289)
T ss_pred ---hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH-
Confidence 2344555555555555566655555555532221 0 2344444444332222 1122
Q ss_pred HHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhc--
Q 000714 592 LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDV-- 669 (1335)
Q Consensus 592 ~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~-- 669 (1335)
.++-.| |. .....+|..|++=+..++.-+|..++.+++.|-.. -.++.|.+.|.+
T Consensus 175 -~amF~L----------Rn-~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~~ 231 (289)
T KOG0567|consen 175 -RAMFYL----------RN-IGTEEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDET 231 (289)
T ss_pred -hhhhHh----------hc-cCcHHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhhh
Confidence 122111 11 23345688889989888999999999999998644 368889988865
Q ss_pred CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 670 GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 670 ~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
+.+-++++++.||+.+. ++..++.|.+.+++..+-+++.+..+|-.+-
T Consensus 232 E~pMVRhEaAeALGaIa------------~e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIA------------DEDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred cchHHHHHHHHHHHhhc------------CHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 45668999999998766 3345677888999988888888888876543
No 111
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.22 Score=58.37 Aligned_cols=112 Identities=17% Similarity=0.165 Sum_probs=64.4
Q ss_pred cCCcHHHHHh-hcCCCHHHHHHHHHHHHHhhccCCCCccccchhhh-------cCChHH--------------HHHHhhc
Q 000714 105 GGCIPPLLGL-LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST-------EGVVPV--------------LWEQLKN 162 (1335)
Q Consensus 105 ~g~I~~Lv~l-L~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~-------~G~Ip~--------------Lv~LL~~ 162 (1335)
+||-|.|+-+ |++.++..|.-|+..+..+-+|. |.|.. ....|. |+-.|..
T Consensus 45 ~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-------k~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~ 117 (728)
T KOG4535|consen 45 ELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-------KQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVA 117 (728)
T ss_pred CCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-------HHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4778877665 78899999988888888777642 22211 111221 2333333
Q ss_pred CCCChhhHHHHHHHHHHHhhcCChhhHHHH-HhcCCHHHHHHHhccCChhHHHHHHHHHHHHhh
Q 000714 163 GLKSGNVVDNLLTGALRNLSTSTEGFWAAT-VQAGGIDILVKLLTLGQSSTQAHVCFLLACMME 225 (1335)
Q Consensus 163 ~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i-~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~ 225 (1335)
... +.+-..+..+|.+|.++.+-.+-.+ .-...+..+-.++++.++.++..+...+..+..
T Consensus 118 e~~--~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 118 ESS--SQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred hcC--chhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHh
Confidence 221 2233456788888887654332221 112334445567778888888877777765543
No 112
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=4.2 Score=52.98 Aligned_cols=269 Identities=15% Similarity=0.061 Sum_probs=140.0
Q ss_pred HHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCC
Q 000714 191 ATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHC 270 (1335)
Q Consensus 191 ~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~ 270 (1335)
++++ +.++.|.+.+++.+..++-.+|+-+.++....+ ..+ ...++...+.++...++...-..++-+|..|+...
T Consensus 337 eivE-~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVE-FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHH-HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3443 788889999999999999999999999987655 222 24567777777766554466667888888877421
Q ss_pred HHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHhhhhHH
Q 000714 271 KDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTLGALAS 350 (1335)
Q Consensus 271 ~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ 350 (1335)
--.-..+ ...+|.++.-+.... .-++......++..|+-..+.++...+ +..-.|+.+.+-.--.
T Consensus 412 lLlps~l--~dVvplI~kaL~Yd~-~~G~~s~G~~VRDaAcY~~WAf~Rays------------~~~l~p~l~~L~s~LL 476 (1133)
T KOG1943|consen 412 LLLPSLL--EDVVPLILKALHYDV-RRGQHSVGQHVRDAACYVCWAFARAYS------------PSDLKPVLQSLASALL 476 (1133)
T ss_pred CcchHHH--HHHHHHHHHHhhhhh-hhcccccccchHHHHHHHHHHHHhcCC------------hhhhhHHHHHHHHHHH
Confidence 0000000 114455555554422 112223335666666655555554211 1100111100000000
Q ss_pred HHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHH
Q 000714 351 ALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEE 430 (1335)
Q Consensus 351 ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 430 (1335)
.+.++.+ ....|..|.-|+.... +..|-+|.=+.+....+.--...
T Consensus 477 -----------------------~~AlFDr--evncRRAAsAAlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 477 -----------------------IVALFDR--EVNCRRAASAALQENV---------GRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred -----------------------HHHhcCc--hhhHhHHHHHHHHHHh---------ccCCCCCCchhhhhhcchhhhhh
Confidence 0111111 1235666555555432 22222322223333333221112
Q ss_pred HHHHHHHhhhccCchhHHHhhcc-cHHHHHHH-----hcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhh
Q 000714 431 LVRALLKLCNNEGSLWRALQGRE-GIQLLISL-----LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 504 (1335)
Q Consensus 431 A~~aL~~Ls~~~~~~~~~i~~~g-~I~~Lv~l-----L~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL 504 (1335)
-..+...+|.. +.+.. -..++++- +.+=+..+++.++++|.+|+...++ ....+..|+++...
T Consensus 523 rsNcy~~l~~~-------ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ 591 (1133)
T KOG1943|consen 523 RSNCYLDLCVS-------IAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDST 591 (1133)
T ss_pred hhhHHHHHhHH-------HHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhh
Confidence 22222233221 22222 13333332 3344789999999999999864333 45567889999988
Q ss_pred ccCChHHHHHHHHHHHHHhc
Q 000714 505 ESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 505 ~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
.+++...+.-+.-+.+.+..
T Consensus 592 ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 592 LSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred cCCChHHhhhhHHHHHHHHH
Confidence 88888888766555555443
No 113
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.65 Score=54.40 Aligned_cols=245 Identities=17% Similarity=0.170 Sum_probs=159.4
Q ss_pred HHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccC-----c----hhHHHhhcccHHHHHH
Q 000714 390 TIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEG-----S----LWRALQGREGIQLLIS 460 (1335)
Q Consensus 390 aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~-----~----~~~~i~~~g~I~~Lv~ 460 (1335)
.++-+..++.-|+.-..+.+.++++.|+.+|.+.+.++-...+..|..|+..+- + ...++++.+.++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 344455667778777788889999999999999999999999999999975432 1 2346677788899998
Q ss_pred HhcCCCHHH------HHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHHHHHhccChhhHHH
Q 000714 461 LLGLSSEQQ------QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASILRNLCNHSEDIRAC 532 (1335)
Q Consensus 461 lL~~~~~~v------~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~ 532 (1335)
-++.=++.+ ..+....+-|+..-.++....+++.|.+.-|+.-+... -..-+..|..+|.-+..++.+++..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 886444433 44556777788766677777888876665555433322 2344567888888888887778888
Q ss_pred HHhcCcHHHHHHHhh---cCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhh-cCchHHH
Q 000714 533 VESADAVPALLWLLK---NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSV-VSFSDIL 608 (1335)
Q Consensus 533 i~~~g~i~~Lv~LL~---~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~-~~~~~~~ 608 (1335)
+..-+++..+++-+. ..+|. ..+-+++..+..-.||+. .....
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~-------------------------------~~~E~EmmeNLFdcLCs~lm~~~n-- 310 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPA-------------------------------TVDEEEMMENLFDCLCSLLMAPAN-- 310 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCC-------------------------------CcCHHHHHHHHHHHHHHHhcChhh--
Confidence 888788877766432 22221 111122222222222221 11111
Q ss_pred HHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh--hhHHHHHhcCChHHHHHhhh
Q 000714 609 REGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK--DLRESSIAVKTLWSVMKLLD 668 (1335)
Q Consensus 609 ~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~--~~~~~l~~~g~v~~Lv~LL~ 668 (1335)
++......|+....-+++. ....+..+..+|-.+..+.+ ++|..+++.++...+.-++.
T Consensus 311 r~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 311 RERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred hhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 2333445566655555554 55567888888888877755 68889999988877777664
No 114
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.31 Score=57.22 Aligned_cols=307 Identities=12% Similarity=0.092 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc-----ChhhHHHHHhcCcHHHH
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH-----SEDIRACVESADAVPAL 542 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-----~~~~r~~i~~~g~i~~L 542 (1335)
.++.+|..+|..++.+..-.+..+++ ....+..-+.+..+.+++.++..+..+... .|+.-+.=.+.|.+..+
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~ 347 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM 347 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence 45667777777776543333333333 223333445566889999999999887642 22222211122222111
Q ss_pred HH-------HhhcCCHHHHHHHHHHHHHhhccCCC----CcHH-HHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHH
Q 000714 543 LW-------LLKNGSANGKEIAAKTLNHLIHKSDT----ATIS-QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILRE 610 (1335)
Q Consensus 543 v~-------LL~~~~~~~k~~Aa~aL~~L~~~~~~----~~i~-~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~ 610 (1335)
.- ...+..+..+-.++.++.++...+-. +.-. .+..+...++.+.+..=..++..+....=+...-..
T Consensus 348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d 427 (728)
T KOG4535|consen 348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD 427 (728)
T ss_pred HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence 10 11122234456677778877654321 1111 122222222222111111222222211111110011
Q ss_pred hhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhc----CChhhHHHH--HhcCChHHHHHhhhc---CChhHHHHHHHH
Q 000714 611 GSAANDAVETMIKILSSTKEETQAKSASALAGIFE----TRKDLRESS--IAVKTLWSVMKLLDV---GSECILVEASRC 681 (1335)
Q Consensus 611 ~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~----~~~~~~~~l--~~~g~v~~Lv~LL~~---~~~~v~~~aa~a 681 (1335)
..-...+...+...+.+..-..|+.++++++|++. +.+..+... .....+.+++..-.. ....+...+.++
T Consensus 428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navra 507 (728)
T KOG4535|consen 428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRA 507 (728)
T ss_pred HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 11123345555566666677889999999999874 222211111 111123333333322 345577778888
Q ss_pred HHHHHccChh----hhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHH--HHCCChHHHHHHhhcCC
Q 000714 682 LAAIFLSVRE----NREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKA--IAEEIILPATRVLCEGT 755 (1335)
Q Consensus 682 L~~L~~~~~~----~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~--~~~g~v~~L~~ll~~~~ 755 (1335)
+.+++..-.. ..+ .+.+...+..+-.....+.-.||.+++.++.||..++...-+- ...-+.+.|+.++.+..
T Consensus 508 LgnllQvlq~i~~~~~~-e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~ 586 (728)
T KOG4535|consen 508 LGNLLQFLQPIEKPTFA-EIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK 586 (728)
T ss_pred HhhHHHHHHHhhhccHH-HHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence 8888743221 112 1333333333334555677789999999999999777652221 13456788888887766
Q ss_pred hh-hHHHHHHHHHHHhhcCCCch
Q 000714 756 IS-GKTLAAAAIARLLHSRKIDY 777 (1335)
Q Consensus 756 ~~-~k~~A~~aL~~Ll~~~~~~~ 777 (1335)
+- ++.+|+.+|..-.......+
T Consensus 587 NFKVRi~AA~aL~vp~~re~~~d 609 (728)
T KOG4535|consen 587 NFKVRIRAAAALSVPGKREQYGD 609 (728)
T ss_pred cceEeehhhhhhcCCCCcccchh
Confidence 65 88899888876665443333
No 115
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.40 E-value=0.33 Score=59.57 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=86.9
Q ss_pred HHHHHhhcCChhhHHHHHhcCCHHHHHHHh----------ccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHH
Q 000714 176 GALRNLSTSTEGFWAATVQAGGIDILVKLL----------TLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLK 245 (1335)
Q Consensus 176 ~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL----------~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~ 245 (1335)
.+|+-|+.+.. ....+....++..|.++- ...+..+...|.++|+|+...++..+..+.+.|..+.+++
T Consensus 3 ~~LRiLsRd~~-~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 3 ETLRILSRDPT-GLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHccCcc-cchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 45555654433 224455555666666555 3356788999999999999998888999999999999999
Q ss_pred HhcCCC----CHHHHHHHHHHHHhcccCCHHHHHHHHHC-CChHHHHHHhcCC
Q 000714 246 LLGSGN----EASVRAEAAGALKSLSDHCKDARREIAGS-NGIPAMINATIAP 293 (1335)
Q Consensus 246 lL~s~~----~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~-Ggi~~Lv~lL~~~ 293 (1335)
.|+... +.++.--..+.|.-++....+.+..+++. +++..++..+...
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~ 134 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERH 134 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 998861 23788889999988887777888777655 7888887766543
No 116
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.39 E-value=0.0066 Score=47.42 Aligned_cols=40 Identities=38% Similarity=0.618 Sum_probs=36.5
Q ss_pred hHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 485 DDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 485 ~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
++++..+.+.|++++|++++++++++++..++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 3478889999999999999999999999999999999973
No 117
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.48 Score=57.90 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=100.7
Q ss_pred hhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCCh
Q 000714 406 KLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNEND 485 (1335)
Q Consensus 406 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~ 485 (1335)
.|...|+-..+|.-|.+.-.+||+.|+..++.|+...+... ..++..|++++.+....++..|..+|..|+.+ -
T Consensus 368 siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l 441 (823)
T KOG2259|consen 368 SIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFNDEIEVVRLKAIFALTMISVH-L 441 (823)
T ss_pred ccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-h
Confidence 45556777788888877778999999999999998776532 36788999999999999999999999999864 2
Q ss_pred HhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 000714 486 DSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1335)
Q Consensus 486 ~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~ 565 (1335)
. .+..-++.+...|.+.++++|+..-..|.+.-..+.++-.. ++..|...+.. .|.-+.....++.++.
T Consensus 442 ~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-----~v~~lL~~L~k-yPqDrd~i~~cm~~iG 510 (823)
T KOG2259|consen 442 A-----IREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-----CVAHLLKNLGK-YPQDRDEILRCMGRIG 510 (823)
T ss_pred e-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-----HHHHHHHHhhh-CCCCcHHHHHHHHHHh
Confidence 2 23335678888899999999997777776643322222222 22333333322 2333445556666665
Q ss_pred ccCC
Q 000714 566 HKSD 569 (1335)
Q Consensus 566 ~~~~ 569 (1335)
.++.
T Consensus 511 qnH~ 514 (823)
T KOG2259|consen 511 QNHR 514 (823)
T ss_pred ccCh
Confidence 5443
No 118
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.33 E-value=0.016 Score=55.02 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc--cCChHHHHHHHHHHHHHhccChhhHHHHHh
Q 000714 469 QQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE--SGSAKAKEDSASILRNLCNHSEDIRACVES 535 (1335)
Q Consensus 469 v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~--~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~ 535 (1335)
.+...+.+|+||+..++..+..+.+.|+||.++.... ..+|-+++.|.+++.||+..++++++.|.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567789999999999999999999999999998654 347999999999999999999999998865
No 119
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.16 E-value=0.08 Score=58.91 Aligned_cols=185 Identities=17% Similarity=0.202 Sum_probs=112.5
Q ss_pred cCCCHHHHHHHHHHHHHhccCC--hHhHHHHHh--cCCHHHHHHhhccCChHHHHHHHHHHHHHhccC-hhhHHHHHhcC
Q 000714 463 GLSSEQQQECSVALLCLLSNEN--DDSKWAITA--AGGIPPLVQILESGSAKAKEDSASILRNLCNHS-EDIRACVESAD 537 (1335)
Q Consensus 463 ~~~~~~v~~~A~~aL~nLs~~~--~~~r~~i~~--~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~-~~~r~~i~~~g 537 (1335)
.+.+.+.+..++.-|..+..++ .+....+.+ ...+..+...+.+....+...|+.++..|+..- ......+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~--~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA--DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH--HH
Confidence 4556777888888887776543 122222222 145566777777666778888999998888652 2233232 34
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC--CCc-HHHHHHHhcCCCcchHHHHHHHHHHhhhhcC-chHHHHHhhh
Q 000714 538 AVPALLWLLKNGSANGKEIAAKTLNHLIHKSD--TAT-ISQLTALLTSDLPESKVYVLDALKSMLSVVS-FSDILREGSA 613 (1335)
Q Consensus 538 ~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~--~~~-i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~-~~~~~~~~i~ 613 (1335)
.+|.|++.+.++...+++.|..+|..+..... +.. ...+...+.+.++.++..++..+..+....+ ....+.....
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 68999999999888899999999999988776 344 4556667788899999999999988765444 1111111111
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 000714 614 ANDAVETMIKILSSTKEETQAKSASALAGIFETRKD 649 (1335)
Q Consensus 614 ~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~ 649 (1335)
-...++.+.+.+.+.++++|..|-.++..+....++
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 134678888899999999999999999999765444
No 120
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.09 E-value=0.19 Score=64.01 Aligned_cols=182 Identities=15% Similarity=0.165 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHH-hhcCchhHHHHHhcCCcHHHHHhhcC
Q 000714 39 KEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGS-LCKENELRVKVLLGGCIPPLLGLLKS 117 (1335)
Q Consensus 39 k~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~-L~~~~~~~~~i~~~g~I~~Lv~lL~s 117 (1335)
|..|+..|..+-+-.+=+-. ++--.|.+|-.+.+|++...+.|.--+-+=+. |+-++..+..+++.++-..+++.|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~-LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVD-LALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhh-hhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 66888888888775442221 12237999999999999999988655555555 45677788999999888888888876
Q ss_pred C---CHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHh
Q 000714 118 S---SAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQ 194 (1335)
Q Consensus 118 ~---~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~ 194 (1335)
+ ++|.|..|+-.|..+..+ -..+.+...+.+.|..=+++|+++. .+-.+.+++-+|..|=.+.+..+-.=++
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~n---f~lGQ~acl~~~li~iCle~lnd~~--~pLLrQW~~icLG~LW~d~~~Arw~G~r 640 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRN---FKLGQKACLNGNLIGICLEHLNDDP--EPLLRQWLCICLGRLWEDYDEARWSGRR 640 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcc---cchhHHHhccccHHHHHHHHhcCCc--cHHHHHHHHHHHHHHhhhcchhhhcccc
Confidence 2 368888888888888873 3344555666676776677777752 4556777777888887666655444567
Q ss_pred cCCHHHHHHHhccCChhHHHHHHHHHHHHhhc
Q 000714 195 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEE 226 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~ 226 (1335)
.++.+.|..+|+++.+++|..|..+|..+...
T Consensus 641 ~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 641 DNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999988754
No 121
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.95 E-value=0.73 Score=50.82 Aligned_cols=236 Identities=17% Similarity=0.157 Sum_probs=146.5
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC-HHHHHHHHHHHHhcccCCHHHHH
Q 000714 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDARR 275 (1335)
Q Consensus 197 ~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~vr~~Aa~aL~nLs~~~~e~r~ 275 (1335)
.+..+.+...+++...+...+.+|.. +.+..+++.|+..+...+. +-+|..|+.+|+++.. .
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ-----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~----- 99 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQ-----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-P----- 99 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhh-----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-h-----
Confidence 35666666666655555556655543 2346778999999876543 4678899999999882 2
Q ss_pred HHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchh----hhhhcccccCCCChhHHHhHhhhhHHH
Q 000714 276 EIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNV----ISSLGQSLESCSSPAQVADTLGALASA 351 (1335)
Q Consensus 276 ~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~----i~~L~~l~~~~~~~~~i~~~~Gal~~l 351 (1335)
..++.|-++.++|. ..+.+-+-.|+.++-...... ...+.+ .+|. .+
T Consensus 100 -----~~~~~l~k~~~dp~---------~~v~ETc~lAi~rle~~~~~~~~~~~~p~~S--vdPa--~p----------- 150 (289)
T KOG0567|consen 100 -----ESLEILTKYIKDPC---------KEVRETCELAIKRLEWKDIIDKIANSSPYIS--VDPA--PP----------- 150 (289)
T ss_pred -----hhHHHHHHHhcCCc---------cccchHHHHHHHHHHHhhccccccccCcccc--CCCC--Cc-----------
Confidence 25666777765554 445666666777765421110 001100 1111 00
Q ss_pred HHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHH
Q 000714 352 LMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEEL 431 (1335)
Q Consensus 352 l~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A 431 (1335)
.+...+..+-..+++.....--|..+...|.++ .....|..|+.-+...+.-.|..+
T Consensus 151 -------------~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~SalfrhEv 207 (289)
T KOG0567|consen 151 -------------ANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADDSALFRHEV 207 (289)
T ss_pred -------------cccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccchHHHHHHH
Confidence 011123333344444443333344444444433 223467778887877877788888
Q ss_pred HHHHHHhhhccCchhHHHhhcccHHHHHHHhcC--CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCCh
Q 000714 432 VRALLKLCNNEGSLWRALQGREGIQLLISLLGL--SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSA 509 (1335)
Q Consensus 432 ~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~ 509 (1335)
+.++..|-. .-+||.|.+.|.. .++-++..|+.+|..++. ++ .++.|.+++.+.++
T Consensus 208 AfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 208 AFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEVLKEYLGDEER 265 (289)
T ss_pred HHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHHHHHHcCCcHH
Confidence 888877632 3568999998864 467899999999999994 55 57778888988888
Q ss_pred HHHHHHHHHHHHHh
Q 000714 510 KAKEDSASILRNLC 523 (1335)
Q Consensus 510 ~v~~~Aa~aL~nL~ 523 (1335)
-+++.|..+|.-+-
T Consensus 266 vv~esc~valdm~e 279 (289)
T KOG0567|consen 266 VVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876554
No 122
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.92 E-value=0.014 Score=45.52 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=34.3
Q ss_pred hhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 000714 445 LWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLS 481 (1335)
Q Consensus 445 ~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs 481 (1335)
.+..+.+.|+++.|+++++++++++++.++++|+||+
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 5667889999999999999999999999999999997
No 123
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.91 E-value=0.031 Score=62.21 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=110.2
Q ss_pred ccCCHHHHHHHHHHHHHhhcCc---hhHHHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhh
Q 000714 75 RSGSLAVKIQAATVLGSLCKEN---ELRVKVLL--GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFST 149 (1335)
Q Consensus 75 ~s~~~~vk~~aa~~L~~L~~~~---~~~~~i~~--~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~ 149 (1335)
.+.+++.|.++...|..++..+ +....+.. ...++.+...+.+....+...|+.++..++. .-...-.-+-
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~----~l~~~~~~~~ 92 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLAR----QLGSHFEPYA 92 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHH----HHGGGGHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHhHhHHHHH
Confidence 5678899999999999998655 23333332 2556677777776666677788888888887 2222222234
Q ss_pred cCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcc
Q 000714 150 EGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVS 229 (1335)
Q Consensus 150 ~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~ 229 (1335)
...+|.|++.+.+.+ ..++..+..+|..++...+.. ..+ .++.+...+.+.++.+|..++.++..+....+.
T Consensus 93 ~~~l~~Ll~~~~~~~---~~i~~~a~~~L~~i~~~~~~~-~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 93 DILLPPLLKKLGDSK---KFIREAANNALDAIIESCSYS-PKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H---HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHCCcH-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 456788888887753 347777888888888654411 111 145677778889999999999999877644331
Q ss_pred hhhhHhc----cccHHHHHHHhcCCCCHHHHHHHHHHHHhcccC
Q 000714 230 VCSRVLA----ADATKQLLKLLGSGNEASVRAEAAGALKSLSDH 269 (1335)
Q Consensus 230 ~~~~i~~----~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~ 269 (1335)
....+.. ...++.+.+.+.+.+. ++|..|-.++..+.+.
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~-~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADP-EVREAARECLWALYSH 207 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-H-HHHHHHHHHHHHHHHH
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHH
Confidence 2222222 4477888888888765 9999999999998753
No 124
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.91 E-value=7.6 Score=49.07 Aligned_cols=274 Identities=15% Similarity=0.132 Sum_probs=138.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHh----
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---- 487 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~---- 487 (1335)
..+.+-+++++...-+...+++++.+|..... +.+. .++..|--+++++...+|..|..+|..++...|..
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~---r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNS---RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCH---hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 45666778888888999999999999865542 2232 37788888899999999999999998887543331
Q ss_pred ----HHHHHhc---CCHHHHHHhhccCChHHHHHHHHHHHHHhcc-ChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHH
Q 000714 488 ----KWAITAA---GGIPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAK 559 (1335)
Q Consensus 488 ----r~~i~~~---g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~ 559 (1335)
-..|.+. =...++-.+|+++...-.++-..-+.++..+ +++++-.+.+ ++..|... .|.-+..-..
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~~----fp~k~~~~m~ 394 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCLK----FPRKHTVMMN 394 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHhh----ccHHHHHHHH
Confidence 1112111 1234455566666544444333333333222 2333322211 22222221 1222222223
Q ss_pred HHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHH
Q 000714 560 TLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASA 639 (1335)
Q Consensus 560 aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~a 639 (1335)
.|.++... ++.-+-|....+++-....... . .++.++..|..+.. +-+...-+.+.
T Consensus 395 FL~~~Lr~--------------eGg~e~K~aivd~Ii~iie~~p---d-----sKe~~L~~LCefIE--Dce~~~i~~rI 450 (865)
T KOG1078|consen 395 FLSNMLRE--------------EGGFEFKRAIVDAIIDIIEENP---D-----SKERGLEHLCEFIE--DCEFTQIAVRI 450 (865)
T ss_pred HHHHHHHh--------------ccCchHHHHHHHHHHHHHHhCc---c-----hhhHHHHHHHHHHH--hccchHHHHHH
Confidence 33333322 1111222222222221110000 0 11223444444442 22233344444
Q ss_pred HHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHH
Q 000714 640 LAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAE 719 (1335)
Q Consensus 640 L~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~ 719 (1335)
|.-|....+.. .....-+.......--++..+...|..++..+...++ .....+.-.|.+++.+.+.++|.
T Consensus 451 LhlLG~EgP~a---~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D~DdevRd 521 (865)
T KOG1078|consen 451 LHLLGKEGPKA---PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLNDSDDEVRD 521 (865)
T ss_pred HHHHhccCCCC---CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcCchHHHHH
Confidence 44444332210 0111123333333333455566667777777664443 23344566777899999999999
Q ss_pred HHHHHHHHHh
Q 000714 720 QATCALANLI 729 (1335)
Q Consensus 720 ~Aa~aL~nL~ 729 (1335)
+|...|.++-
T Consensus 522 rAtf~l~~l~ 531 (865)
T KOG1078|consen 522 RATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhh
Confidence 9999999887
No 125
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.88 E-value=0.98 Score=55.40 Aligned_cols=272 Identities=12% Similarity=0.076 Sum_probs=152.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhhccCC--CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhc--CchHHHHHhhhhc
Q 000714 540 PALLWLLKNGSANGKEIAAKTLNHLIHKSD--TATISQLTALLTSDLPESKVYVLDALKSMLSVV--SFSDILREGSAAN 615 (1335)
Q Consensus 540 ~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~--~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~--~~~~~~~~~i~~~ 615 (1335)
.-|..+..+++++++..|+..|..|...-. .......+.++.++.++++..|...+..+.+.. +....-.+.--..
T Consensus 201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D 280 (823)
T KOG2259|consen 201 RGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD 280 (823)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH
Confidence 337777777888888888888777765221 234556677788888888777766555444432 1110001111124
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHH---------
Q 000714 616 DAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF--------- 686 (1335)
Q Consensus 616 ~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~--------- 686 (1335)
.++..+.+.+++.+-.+|..|+.+|+.+-.-..+.-....+......+-.. ....+....+.+--
T Consensus 281 ~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRk------r~ahkrpk~l~s~GewSsGk~~~ 354 (823)
T KOG2259|consen 281 AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRK------RTAHKRPKALYSSGEWSSGKEWN 354 (823)
T ss_pred HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhh------hhcccchHHHHhcCCcccCcccc
Confidence 568888888888898999999999988876544433322222222211100 00111111111111
Q ss_pred ccCh----hhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchHHHHHHHCCChHHHHHHhhcCChhhHHH
Q 000714 687 LSVR----ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTL 761 (1335)
Q Consensus 687 ~~~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~ 761 (1335)
...| ......++.+|+--+++.-+.+.-.+||+.|+..++.|+. .|...... +..|+..+.+.-..++..
T Consensus 355 advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~a-----ldfLvDMfNDE~~~VRL~ 429 (823)
T KOG2259|consen 355 ADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRA-----LDFLVDMFNDEIEVVRLK 429 (823)
T ss_pred ccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHH-----HHHHHHHhccHHHHHHHH
Confidence 0000 1122358888888888988888888899999999998875 44444333 233666665555558888
Q ss_pred HHHHHHHHhhcCCCchhHHHHHHhh---------ccHHHHHHhhhcCCCCCCchhHHHHHH-HHHHhCCCCC
Q 000714 762 AAAAIARLLHSRKIDYTITDCVNRA---------GTVLALVSFLESASGSVATSEALDALA-ILSRSGGASG 823 (1335)
Q Consensus 762 A~~aL~~Ll~~~~~~~~~~~~i~~~---------g~l~~Lv~~~~~~~~~~~~~~al~~L~-~l~~~~~~~~ 823 (1335)
|..+|..+..+....+.....|... -++..++...+-.+...- ...+..+. .|.++++|.+
T Consensus 430 ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i-~m~v~~lL~~L~kyPqDrd 500 (823)
T KOG2259|consen 430 AIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECI-DMCVAHLLKNLGKYPQDRD 500 (823)
T ss_pred HHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHHhhhCCCCcH
Confidence 8888888777766665543322211 123333333333332222 22333333 7777888853
No 126
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=95.88 E-value=6.2 Score=47.85 Aligned_cols=334 Identities=14% Similarity=0.088 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhhcccccCCCC-hhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCC
Q 000714 304 QALQENAMCALANISGGLSNVISSLGQSLESCSS-PAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRL 382 (1335)
Q Consensus 304 ~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~-~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~ 382 (1335)
.-.|.+|++.|..+-...+-....+.+++..+.+ +-+.+. .-.+.+....+.+... -.....+.|-.+++...
T Consensus 204 ~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~-V~lvr~~~~ll~~n~q-----~~~q~rpfL~~wls~k~ 277 (898)
T COG5240 204 PISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAG-VLLVRATVELLKENSQ-----ALLQLRPFLNSWLSDKF 277 (898)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhh-eehHHHHHHHHHhChH-----HHHHHHHHHHHHhcCcc
Confidence 5678899999998877666666666666666531 111111 1111222222221100 00113444555554433
Q ss_pred chhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHh
Q 000714 383 PFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLL 462 (1335)
Q Consensus 383 ~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL 462 (1335)
+ .++..+++++..++..- +..... ...+..|-.+|++.....|-.|.+.|..|+...+.... -+-+.+-.++
T Consensus 278 e-mV~lE~Ar~v~~~~~~n-v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~-----vcN~evEsLI 349 (898)
T COG5240 278 E-MVFLEAARAVCALSEEN-VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS-----VCNKEVESLI 349 (898)
T ss_pred h-hhhHHHHHHHHHHHHhc-cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee-----ecChhHHHHh
Confidence 3 36677777777654311 000111 23455666777777777778888888888766554211 1123333444
Q ss_pred cCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHH--------HH
Q 000714 463 GLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRAC--------VE 534 (1335)
Q Consensus 463 ~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~--------i~ 534 (1335)
.+.+..+-..|...|..-. .+++...++. -|+.++.=+ +..-+..+..++..|+-.-|.-+.. +.
T Consensus 350 sd~Nr~IstyAITtLLKTG--t~e~idrLv~--~I~sfvhD~---SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~ 422 (898)
T COG5240 350 SDENRTISTYAITTLLKTG--TEETIDRLVN--LIPSFVHDM---SDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL 422 (898)
T ss_pred hcccccchHHHHHHHHHcC--chhhHHHHHH--HHHHHHHhh---ccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 5555555555555544433 2444333332 233333322 2233333444444444322222221 22
Q ss_pred hcCc-------HHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCC-cHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchH
Q 000714 535 SADA-------VPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA-TISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 606 (1335)
Q Consensus 535 ~~g~-------i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~-~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~ 606 (1335)
+.|+ +.++.++++. .|+.|+.|...|+....+.+.. ....++.+|..+-|.. +
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~~-~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a---------------~--- 483 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAMEN-DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRA---------------K--- 483 (898)
T ss_pred hcccchHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCC---------------C---
Confidence 2332 2333333322 3455555555555554433211 1111122221111110 0
Q ss_pred HHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHH
Q 000714 607 ILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIF 686 (1335)
Q Consensus 607 ~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~ 686 (1335)
.....+..+-.-+--+|.-+|.+|..||...+.+..+. +.-..+...|-.++.+.+++++..|+..+.++-
T Consensus 484 ------~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 484 ------TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 01223445555444567788999999998887764331 111223455667778888888888888887765
No 127
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.87 E-value=0.04 Score=65.18 Aligned_cols=186 Identities=11% Similarity=-0.007 Sum_probs=136.0
Q ss_pred HHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHH
Q 000714 473 SVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN 552 (1335)
Q Consensus 473 A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~ 552 (1335)
++..|..++.+..-.|.-+.+....++|+++|.+++..+.--+...++|+.-.-...+..+.+.|.+..|+.++.+.++.
T Consensus 409 ~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDda 488 (743)
T COG5369 409 IVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDA 488 (743)
T ss_pred HHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhh
Confidence 34445556654444577888888999999999998777777788889998876678889999999999999999988887
Q ss_pred HHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHH
Q 000714 553 GKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEET 632 (1335)
Q Consensus 553 ~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v 632 (1335)
.+....|.|.++....+ +..+-...+.-++..++++..++.-.+
T Consensus 489 Lqans~wvlrHlmyncq------------------------------------~~ekf~~Lakig~~kvl~~~NDpc~~v 532 (743)
T COG5369 489 LQANSEWVLRHLMYNCQ------------------------------------KNEKFKFLAKIGVEKVLSYTNDPCFKV 532 (743)
T ss_pred hhhcchhhhhhhhhcCc------------------------------------chhhhhhHHhcCHHHHHHHhcCccccc
Confidence 88888888888855322 100111122346889999999999999
Q ss_pred HHHHHHHHHHHhcCChhh---HHHHHhcC----ChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhH
Q 000714 633 QAKSASALAGIFETRKDL---RESSIAVK----TLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1335)
Q Consensus 633 ~~~Aa~aL~nL~~~~~~~---~~~l~~~g----~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 694 (1335)
|.++...|.|+..+...| ++...+.- ....|++.+...+|-...+.+..+.+++.++..-..
T Consensus 533 q~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~ 601 (743)
T COG5369 533 QHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDY 601 (743)
T ss_pred HHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHH
Confidence 999999999998754332 22211111 234566777788888888889999999988765443
No 128
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.85 E-value=1.9 Score=52.72 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=58.8
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccCh
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE 527 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~ 527 (1335)
..+|.|++..+..+...+.....+|.++-.+.|...-.-.-...+|.|++-|..++.+++..+..+|..+...++
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 568889998888887788889999999987666432111113478999999999999999999999999988643
No 129
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.85 E-value=0.028 Score=53.50 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc--CCCHHHHHHHHHHHHHhccCChHhHHHHHh
Q 000714 428 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG--LSSEQQQECSVALLCLLSNENDDSKWAITA 493 (1335)
Q Consensus 428 ~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~ 493 (1335)
|...++.|.|||..+...+..+++.||||.+++.-. ..+|-+++.|..+++||+..+++++..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 567788999999999999999999999999999665 457899999999999999999999888765
No 130
>PRK14707 hypothetical protein; Provisional
Probab=95.76 E-value=15 Score=51.34 Aligned_cols=693 Identities=14% Similarity=0.088 Sum_probs=292.9
Q ss_pred HHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc-CCHHHHHHHHHHHHH-hhcCchhHHHHHhcCCcHHHHHhhc-
Q 000714 40 EYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGS-LCKENELRVKVLLGGCIPPLLGLLK- 116 (1335)
Q Consensus 40 ~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s-~~~~vk~~aa~~L~~-L~~~~~~~~~i~~~g~I~~Lv~lL~- 116 (1335)
..|...|.+---++++.+..+ +...+...+.-|.. .+..+=..++.+|.. ++.+++.+..+- .-++...+..|+
T Consensus 308 ~~Aa~~la~rl~~d~~l~~~~--~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsK 384 (2710)
T PRK14707 308 AEAAIALAERLADDPELCKAL--NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSK 384 (2710)
T ss_pred HHHHHHHHHHHhccHhhhhcc--chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhc
Confidence 334444433322255555554 34555556666643 333333455555554 566665555443 334555555554
Q ss_pred CCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcC
Q 000714 117 SSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAG 196 (1335)
Q Consensus 117 s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g 196 (1335)
-++..+...|+.+|..--. .|..-++.|-.+|+ ..+++-|+.-.++. +...++.+|..-......... -.+..
T Consensus 385 Wp~~~~c~~aa~~LA~~l~---~d~~l~~~~~~Q~v-an~lnalsKWPd~~--~C~~aa~~lA~~la~d~~l~~-~~~p~ 457 (2710)
T PRK14707 385 WPDTPVCAAAASALAEHVV---DDLELRKGLDPQGV-SNALNALAKWPDLP--ICGQAVSALAGRLAHDTELCK-ALDPI 457 (2710)
T ss_pred CCCchHHHHHHHHHHHHhc---cChhhhhhcchhhH-HHHHHHhhcCCcch--hHHHHHHHHHHHHhccHHHHh-hcChH
Confidence 4566666777777765544 15444555555554 44455555543332 333344444432222222212 12233
Q ss_pred CHHHHHHHhcc-CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCC-HHHHHHHHHHHHhcccCCHHHH
Q 000714 197 GIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNE-ASVRAEAAGALKSLSDHCKDAR 274 (1335)
Q Consensus 197 ~I~~Lv~lL~s-~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-~~vr~~Aa~aL~nLs~~~~e~r 274 (1335)
.|...+..++. ++..+-..++..|+.-...+.+.+..+ +..-+..-+.-|+...+ ......+..+-+.+.. .....
T Consensus 458 ~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~-~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~-~~~l~ 535 (2710)
T PRK14707 458 NVTQALDALSKWPDTPICGQTASALAARLAHERRLRKAL-KPQEVVIALHSLSKWPDTPICAEAASALAERVVD-ELQLR 535 (2710)
T ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhc-CHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcc-chhhh
Confidence 35555555554 444444455555543323333333322 23333333344443333 1111112222222221 11111
Q ss_pred HHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcC------------CchhhhhhcccccCCCChhHHH
Q 000714 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGG------------LSNVISSLGQSLESCSSPAQVA 342 (1335)
Q Consensus 275 ~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g------------~~~~i~~L~~l~~~~~~~~~i~ 342 (1335)
..+-.. .+..++.-+... .+....+.++..|..+... .+.+...|++..+.+ ...
T Consensus 536 ~~~~~~-~~~~~lnalSKw--------p~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~----aC~ 602 (2710)
T PRK14707 536 KAFDAH-QVVNTLKALSKW--------PDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTA----VCA 602 (2710)
T ss_pred hhhhhH-HHHHHHHhhhcC--------CchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcH----HHH
Confidence 111111 112222222111 1222333344333333111 111222222222211 111
Q ss_pred hHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHH-HHhCCcchhhhhcccccHHHHHHHHc
Q 000714 343 DTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALA-SLYGNPLLSIKLENSEAKRLLVGLIT 421 (1335)
Q Consensus 343 ~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~-~L~~~~~~~~~i~~~g~i~~Lv~lL~ 421 (1335)
.. +..+...+.....-...+++..+...+-.|.+-..+... +.++..|+ .+..++.....+.. ..+..+++-|+
T Consensus 603 ~A---a~~LA~~l~~~~~lr~~l~~q~lan~lNALSKWP~s~~C-~~Aa~rLA~rl~~~~~l~~~fna-Q~vAn~LNALS 677 (2710)
T PRK14707 603 EA---VNALAERLVDEPDLRKELDPVDVTNVLNALSKWPGTEVC-AEVARLLAGRLVGDRLLRKTFNS-LDVANALNALS 677 (2710)
T ss_pred HH---HHHHHHHhccChhhhhhccHHHHHHHHhhhhcCCCchHH-HHHHHHHHHHhhhchhhHhhcch-HHHHHHHHhhh
Confidence 11 111111121112222345666665555555554444333 33444443 34555554444443 33444555554
Q ss_pred C-CCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-CCC-HHHHHHHHHHHHHhccCChHhHHHHHhcCCHH
Q 000714 422 M-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSS-EQQQECSVALLCLLSNENDDSKWAITAAGGIP 498 (1335)
Q Consensus 422 ~-~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~~~-~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~ 498 (1335)
. .+.+....++..|......+...+.. .+..+|...+.-|+ =++ +..+..+...-..+. ..+..+..+ +...+.
T Consensus 678 KWPe~e~Cr~Aa~~LA~rLa~~~~Lr~a-l~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL~-~~p~l~~a~-~aQevA 754 (2710)
T PRK14707 678 KWPDTPVCAAAAGGMAERLAADPGLRKE-LNPVDVANALNALSKWPRTPVCAAVASALAARVV-AEPRLRKAF-DAQQVA 754 (2710)
T ss_pred cCCCchHHHHHHHHHHHHHhcChhhHhh-cCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHh-cChhhhhhc-CHHHHH
Confidence 3 44455666666665443333333332 23455666666554 233 334443333334444 334444333 333444
Q ss_pred HHHHhhcc-C-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHH-HhhccCC------
Q 000714 499 PLVQILES-G-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLN-HLIHKSD------ 569 (1335)
Q Consensus 499 ~Lv~LL~~-~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~-~L~~~~~------ 569 (1335)
..++-|.. + ++..+..+...-..|+.+ +..+..+--++.-..|=.+-+-.....-+.|+..|. .+....+
T Consensus 755 NaLNALSKWPd~~~C~~AA~aLA~rLa~~-~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~dp~Lr~af~ 833 (2710)
T PRK14707 755 TALNALSKWPDNQACAAAANTLAERQLRE-PDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVADDPRLREAFD 833 (2710)
T ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHhhC-cchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhcChhHHHhcC
Confidence 45554543 2 334444443444456653 555554433332233333333333333333444444 3332221
Q ss_pred CCcHHHHHHHhcC-CCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 000714 570 TATISQLTALLTS-DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRK 648 (1335)
Q Consensus 570 ~~~i~~Lv~LL~s-~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~ 648 (1335)
...|...+.-|.. .+...-..++.+|+.- +... ..++..+...+....|=.|-+=+++.....++.+|+.--...+
T Consensus 834 AQ~VANaLNALSKWPd~~~Cr~AA~aLA~R--La~e-~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~ 910 (2710)
T PRK14707 834 VQHVATVLNAMSKWPDNAVCAAAAGAMAER--LADE-PELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLADEP 910 (2710)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHH--HhcC-hhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCH
Confidence 1111112222221 2233333444444432 1122 2223333222222222223333566667777777776555546
Q ss_pred hhHHHHHhcCChHHHHHhhhc-CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHH
Q 000714 649 DLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALAN 727 (1335)
Q Consensus 649 ~~~~~l~~~g~v~~Lv~LL~~-~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~n 727 (1335)
+.+..+ +...|...+.-|+. .+......++.+|..=+..++.-.. .+-..+....|-.+-|-++...-..++.+|..
T Consensus 911 ~Lrqal-~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~-Aln~Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 911 ELRKAL-SAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLRE-ALDASNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHHhhc-cHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhh-hccHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 655554 34445555555544 4455666666666665555544333 23333333444444455665555666666665
Q ss_pred -HhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 000714 728 -LILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1335)
Q Consensus 728 -L~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~ 771 (1335)
|..++..+..+-..|+-..|-.+.+=.+...-+.|+.+|..-+.
T Consensus 989 rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa 1033 (2710)
T PRK14707 989 RLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLS 1033 (2710)
T ss_pred HHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhc
Confidence 55555555444334444444444433333344566666666654
No 131
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=10 Score=48.06 Aligned_cols=273 Identities=18% Similarity=0.128 Sum_probs=154.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChh------
Q 000714 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSED------ 528 (1335)
Q Consensus 455 I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~------ 528 (1335)
.+.+-++|++..+.+...|+.++.++...... .+.. ++..|--++.++.+..|-.|.++|..++...|+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 34455567777889999999999999854332 1211 666777778888899999999999999875332
Q ss_pred --hHHHHHhcC---cHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcC
Q 000714 529 --IRACVESAD---AVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVS 603 (1335)
Q Consensus 529 --~r~~i~~~g---~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~ 603 (1335)
.-..|-+.+ +..++..++++|+......-..-+.+ ..++=+++-|.-+.+++..++....
T Consensus 322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~---------------fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISS---------------FVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHH---------------HHHhccccceEEeHHHHHHHHhhcc
Confidence 222222211 23455555555554433221111111 1222234444455555665555544
Q ss_pred chHHHHHhhhhcchHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHH
Q 000714 604 FSDILREGSAANDAVETMIKILSS-TKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCL 682 (1335)
Q Consensus 604 ~~~~~~~~i~~~~~i~~Lv~LL~s-~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL 682 (1335)
... ...+..|.++|+. +.-+.+.....++..+...+++.+.. +...|++.+.+..-. .-+.+.+
T Consensus 387 ~k~--------~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce~~--~i~~rIL 451 (865)
T KOG1078|consen 387 RKH--------TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCEFT--QIAVRIL 451 (865)
T ss_pred HHH--------HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhccch--HHHHHHH
Confidence 322 1236666776654 45677888888888887766665443 445555555443211 1122222
Q ss_pred HHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHH
Q 000714 683 AAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLA 762 (1335)
Q Consensus 683 ~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A 762 (1335)
.-+-...|. .......+..+-..+.-.+.-+|..|+.+|+++....+... ..+.-.|.+.+.+.+.+++..|
T Consensus 452 hlLG~EgP~----a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~----~sI~vllkRc~~D~DdevRdrA 523 (865)
T KOG1078|consen 452 HLLGKEGPK----APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLL----PSILVLLKRCLNDSDDEVRDRA 523 (865)
T ss_pred HHHhccCCC----CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCcc----ccHHHHHHHHhcCchHHHHHHH
Confidence 222222221 11122233334444444566788888889999873222211 1223347788888888899888
Q ss_pred HHHHHHHh
Q 000714 763 AAAIARLL 770 (1335)
Q Consensus 763 ~~aL~~Ll 770 (1335)
..+|..+.
T Consensus 524 tf~l~~l~ 531 (865)
T KOG1078|consen 524 TFYLKNLE 531 (865)
T ss_pred HHHHHHhh
Confidence 88888877
No 132
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.54 E-value=0.081 Score=66.14 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhCCc-chhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhh-cccHHHHHHHhc
Q 000714 386 VQERTIEALASLYGNP-LLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQG-REGIQLLISLLG 463 (1335)
Q Consensus 386 ~q~~aa~aL~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~-~g~I~~Lv~lL~ 463 (1335)
....+..++.||++.. ..+..+...-+++.+-.++...++..|..++.++.||..++--+.+.+.+ ..+.+.....+.
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e 637 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLE 637 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHH
Confidence 3466778888887743 45666766666666666777889999999999999999888777777776 456777777777
Q ss_pred CCCHHHHHHHHHHHHHhccCChHhHH-HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHH
Q 000714 464 LSSEQQQECSVALLCLLSNENDDSKW-AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPAL 542 (1335)
Q Consensus 464 ~~~~~v~~~A~~aL~nLs~~~~~~r~-~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~L 542 (1335)
...+....++++++..++..+...+. ...-..+-..++.++.+++.++|........|+.....+....+.....++.+
T Consensus 638 ~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l 717 (748)
T KOG4151|consen 638 VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELL 717 (748)
T ss_pred hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHH
Confidence 77777888888888866654444444 44445678888999999999999999999999766555566666665555555
Q ss_pred HHHhh
Q 000714 543 LWLLK 547 (1335)
Q Consensus 543 v~LL~ 547 (1335)
..+-+
T Consensus 718 ~~~~~ 722 (748)
T KOG4151|consen 718 SGLQK 722 (748)
T ss_pred HHHHH
Confidence 44433
No 133
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=2.3 Score=53.00 Aligned_cols=246 Identities=11% Similarity=0.095 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHh
Q 000714 424 TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 503 (1335)
Q Consensus 424 ~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~L 503 (1335)
++..+.-.+..++.-|..++..+ ..-|+.+..+|.+.++.+..+|+..|.+++. .|..-.. +...++++
T Consensus 219 ~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l 287 (948)
T KOG1058|consen 219 NDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDL 287 (948)
T ss_pred cHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHH
Confidence 34556666677777776443322 3447888999999999999999999999995 4542221 22344554
Q ss_pred hccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcC
Q 000714 504 LESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS 582 (1335)
Q Consensus 504 L~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s 582 (1335)
+.+. +.+++.....-|..+. ..++..+ .|.+--.+.++.+.+-++++++...-..|....+ +..++.+|..
T Consensus 288 ~~kesdnnvklIvldrl~~l~---~~~~~il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN---vediv~~Lkk 359 (948)
T KOG1058|consen 288 LVKESDNNVKLIVLDRLSELK---ALHEKIL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN---VEDIVQFLKK 359 (948)
T ss_pred HHhccCcchhhhhHHHHHHHh---hhhHHHH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc---HHHHHHHHHH
Confidence 4433 4445443333343333 2222222 3456666777777777787777777666654332 2222222221
Q ss_pred CCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHH
Q 000714 583 DLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWS 662 (1335)
Q Consensus 583 ~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~ 662 (1335)
.-.. + ++. =...+.+.|..-..++...+...++ +.+.+|+.
T Consensus 360 e~~k----------------T-----------~~~-------e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ 400 (948)
T KOG1058|consen 360 EVMK----------------T-----------HNE-------ESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSL 400 (948)
T ss_pred HHHh----------------c-----------ccc-------ccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHH
Confidence 0000 0 000 0113445666677777777766666 34557899
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcC-CCHHHHHHHHHHHHHHhCCch
Q 000714 663 VMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGS-PVLEVAEQATCALANLILDSE 733 (1335)
Q Consensus 663 Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~vk~~Aa~aL~nL~~~~~ 733 (1335)
|++.+.+.++.........+.....-. .-.....+..|++-+.. .+..+-+.++|.+...|....
T Consensus 401 ll~fisD~N~~aas~vl~FvrE~iek~------p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 401 LLDFISDSNEAAASDVLMFVREAIEKF------PNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHhC------chHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 999998888764444444443333111 12223345555555443 333455788888888876554
No 134
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.09 E-value=0.71 Score=53.82 Aligned_cols=198 Identities=17% Similarity=0.141 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcc-cCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcC--
Q 000714 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGS-HSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE-- 95 (1335)
Q Consensus 19 ~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~-~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~-- 95 (1335)
..++.++|+.+... +.+.|+.++..+..+....- ..+++.. ....++.+.+.++.|+.+-+..|+++++-+|-.
T Consensus 42 e~~L~~~Id~l~eK--~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 42 EDKLKEAIDLLTEK--SSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 45688899988653 36789999999999976432 2333321 245577888888888887778888888888732
Q ss_pred -chhHHHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHH--hhcCCC-----
Q 000714 96 -NELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQ--LKNGLK----- 165 (1335)
Q Consensus 96 -~~~~~~i~~~g~I~~Lv~lL~s~~--~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~L--L~~~~~----- 165 (1335)
.+....+.+ ...|+|.+.+.+++ +..|..++.+|.-+++-+..+.. ........+..+|.. ++....
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~--~~~~~~~~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEE--ETEELMESLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChh--HHHHHHHHHHHHHHHHhcCcCCCccccc
Confidence 233344443 46788888888655 45566777777777662211111 110001122222222 222111
Q ss_pred --ChhhHHHHHHHHHHHhhcCChhh-HHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHH
Q 000714 166 --SGNVVDNLLTGALRNLSTSTEGF-WAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACM 223 (1335)
Q Consensus 166 --~~~~v~~~a~~aL~nLs~~~~~~-~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~L 223 (1335)
..+.+...+..+-.-|...-+.. ..... ...++.|..+|.+++.++|..|..+++-+
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 11223333322222222222332 22222 35689999999999999999999998744
No 135
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=20 Score=48.63 Aligned_cols=475 Identities=17% Similarity=0.097 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcC
Q 000714 39 KEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKS 117 (1335)
Q Consensus 39 k~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s-~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s 117 (1335)
+...-+.|..|+.+ ++ +++.|-.|.++-++ ..+..|.-||--++.++++...+..=....-||.|.+.=-+
T Consensus 938 ~isTYKELc~LASd-------l~-qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yD 1009 (1702)
T KOG0915|consen 938 KISTYKELCNLASD-------LG-QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYD 1009 (1702)
T ss_pred cchHHHHHHHHHhh-------cC-ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccC
Confidence 44566667777652 32 47788888998875 56678999999999997544222221223467888777667
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhh--HHHHHhc
Q 000714 118 SSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGF--WAATVQA 195 (1335)
Q Consensus 118 ~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~--~~~i~~~ 195 (1335)
++..+| .|..-+++.-. +|. +.++++-.=..|=+||..-......+++.++-||..|-...+.. ...+-
T Consensus 1010 P~~~Vq-~aM~sIW~~Li---~D~---k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp-- 1080 (1702)
T KOG0915|consen 1010 PDKKVQ-DAMTSIWNALI---TDS---KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP-- 1080 (1702)
T ss_pred CcHHHH-HHHHHHHHHhc---cCh---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--
Confidence 788776 67778888777 232 33444433334445555555556668888899999888654322 11111
Q ss_pred CCHHHHHHHhccCChhHHHH---HHHHHHHHhhc--Ccc--hhhhHhccccHHHHHH--HhcCCCCHHHHHHHHHHHHhc
Q 000714 196 GGIDILVKLLTLGQSSTQAH---VCFLLACMMEE--DVS--VCSRVLAADATKQLLK--LLGSGNEASVRAEAAGALKSL 266 (1335)
Q Consensus 196 g~I~~Lv~lL~s~~~~v~~~---aa~~L~~La~~--~~~--~~~~i~~~g~i~~Lv~--lL~s~~~~~vr~~Aa~aL~nL 266 (1335)
..-..+.+...+-.+.+|.. ++..|..++.. +.. ....-+-..++|.|+. ++ +.- .++|.-+...+..|
T Consensus 1081 elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v-~evr~~si~tl~dl 1158 (1702)
T KOG0915|consen 1081 ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKV-NEVRRFSIGTLMDL 1158 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cch-HHHHHHHHHHHHHH
Confidence 11222333333333445543 44555544411 111 1111111233444443 22 322 48999999999999
Q ss_pred ccCCHH-HHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhhhhcccccCCCChhHHHhHh
Q 000714 267 SDHCKD-ARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVISSLGQSLESCSSPAQVADTL 345 (1335)
Q Consensus 267 s~~~~e-~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~~L~~l~~~~~~~~~i~~~~ 345 (1335)
+..... .+-. -..-+|.|++....-. +..+-..++++ .|+- ...++.+-. +.....|+++++
T Consensus 1159 ~Kssg~~lkP~--~~~LIp~ll~~~s~lE--------~~vLnYls~r~-~~~e---~ealDt~R~---s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1159 AKSSGKELKPH--FPKLIPLLLNAYSELE--------PQVLNYLSLRL-INIE---TEALDTLRA---SAAKSSPMMETI 1221 (1702)
T ss_pred HHhchhhhcch--hhHHHHHHHHHccccc--------hHHHHHHHHhh-hhhH---HHHHHHHHH---hhhcCCcHHHHH
Confidence 964432 1100 1113444554432211 12222333332 1211 011111100 000112333322
Q ss_pred hhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhh--cccccHHHHHHHHcCC
Q 000714 346 GALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKL--ENSEAKRLLVGLITMA 423 (1335)
Q Consensus 346 Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i--~~~g~i~~Lv~lL~~~ 423 (1335)
+-. +.-.+.+ .-..+++.+.++++.+-.-..|-.++.-+..|... +...+ .....+..++..+++.
T Consensus 1222 ~~c---i~~iD~~-------vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r--~~~emtP~sgKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1222 NKC---INYIDIS-------VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR--LGSEMTPYSGKLLRALFPGAKDR 1289 (1702)
T ss_pred HHH---HHhhhHH-------HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH--hccccCcchhHHHHHHhhccccc
Confidence 211 1111100 01234666777777654433444455444444321 00001 1123455666677788
Q ss_pred CHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHh
Q 000714 424 TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQI 503 (1335)
Q Consensus 424 ~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~L 503 (1335)
++.+++.-+.+...|.......+- ..-+..++.-+-...+.....++..+.+++++..+.-.-- +..|-|++-+
T Consensus 1290 Nesv~kafAsAmG~L~k~Ss~dq~----qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~--asaILPLiFL 1363 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSPDQM----QKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNY--ASAILPLIFL 1363 (1702)
T ss_pred cHHHHHHHHHHHHHHHhcCChHHH----HHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhh--HHHHHHHHHH
Confidence 889999888888888765443211 1223344432222223333566677777775443311111 2345566665
Q ss_pred hccCC-hHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHH-hhcCCHHHHHHHHHHHHHhhccC
Q 000714 504 LESGS-AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 504 L~~~~-~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~L-L~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
-.... .+.++.=-.+...++..+...... .....+..++.. ..+.....+..++.++...+...
T Consensus 1364 a~~ee~Ka~q~Lw~dvW~e~vsggagtvrl-~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ 1429 (1702)
T KOG0915|consen 1364 AMHEEEKANQELWNDVWAELVSGGAGTVRL-YLLEILNLICENITNNESWKLRKQAAKAIRVIAEGL 1429 (1702)
T ss_pred HHhHHHHHHHHHHHHHHHHhCCCCcchhhh-hHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccc
Confidence 54432 111211112222333321111111 112223333333 33334667788888887776544
No 136
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.01 E-value=0.036 Score=46.61 Aligned_cols=55 Identities=25% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHh
Q 000714 79 LAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAV 133 (1335)
Q Consensus 79 ~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~L 133 (1335)
+.+|..|+.+|++++.......+-.....+|.|+.+|+++++++|..|+.+|.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999987666655556677899999999999999999999999865
No 137
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.97 E-value=0.71 Score=51.87 Aligned_cols=254 Identities=15% Similarity=0.093 Sum_probs=148.5
Q ss_pred HHcCCCHHHHHHHHHHHHHhhhccCchhHHHh-hcccHHHHHHHhcCC--CHHHHHHHHHHHHHhccCChHhHHHHHh-c
Q 000714 419 LITMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLISLLGLS--SEQQQECSVALLCLLSNENDDSKWAITA-A 494 (1335)
Q Consensus 419 lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~-~~g~I~~Lv~lL~~~--~~~v~~~A~~aL~nLs~~~~~~r~~i~~-~ 494 (1335)
+++.-++-.+..|+.++.++....+ .+..+. +...-..++++++.. ..++|.+..-+++.++. +++..+-+-+ .
T Consensus 157 l~Q~i~~lTrlfav~cl~~l~~~~e-~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~ 234 (432)
T COG5231 157 LSQLIDFLTRLFAVSCLSNLEFDVE-KRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH-HHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 3334455577888999999876653 344333 334456788888764 57899999999999994 6776644432 2
Q ss_pred CCHHHHHHhhccC-ChHHHHHHHHHHHHHhccCh-h-hHHHHHhcCcHHHHHHHhhcC---CHHHHHHHHHHHHHhhccC
Q 000714 495 GGIPPLVQILESG-SAKAKEDSASILRNLCNHSE-D-IRACVESADAVPALLWLLKNG---SANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 495 g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~-~-~r~~i~~~g~i~~Lv~LL~~~---~~~~k~~Aa~aL~~L~~~~ 568 (1335)
..|.-|+++.+.. ..++-.-++.++.|++...+ . ........+ +.+-+++|..+ +.+.+...-..=..|-...
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 4577777777755 45666778889999886322 1 222222233 33334444432 2222211111101110000
Q ss_pred CC-CcHHHHHHHhcCC-----CcchHHHHHHHHHHhhhhcCch-HHHHHhhhhcchHHHHHHhhcCCCHH-HHHHHHHHH
Q 000714 569 DT-ATISQLTALLTSD-----LPESKVYVLDALKSMLSVVSFS-DILREGSAANDAVETMIKILSSTKEE-TQAKSASAL 640 (1335)
Q Consensus 569 ~~-~~i~~Lv~LL~s~-----~~~~k~~a~~aL~~L~~~~~~~-~~~~~~i~~~~~i~~Lv~LL~s~~~~-v~~~Aa~aL 640 (1335)
.. ......+.-|.++ .+..+.. ..+.+ +.+. -.....+..|.++++++++. .-..|+.=+
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~d----------FWs~N~d~l~--kdny~i~k~L~~~lq~n~~nt~i~vAc~Di 381 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKD----------FWSTNLDMLI--KDNYEIVKVLKKYLQSNNPNTWICVACSDI 381 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccC----------chhhhHHHHh--hhhHHHHHHHHHHHhcCCCCceEeeeHhhH
Confidence 00 0000011111111 0000000 00000 0010 12356789999999987766 456778888
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHc
Q 000714 641 AGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFL 687 (1335)
Q Consensus 641 ~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~ 687 (1335)
..+....|+.+..+.+.|+-..++.++.+.++++.-+|..++-.+..
T Consensus 382 ~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 382 FQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 88888889999999999999999999999999999999988876653
No 138
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.50 E-value=0.063 Score=45.13 Aligned_cols=55 Identities=22% Similarity=0.163 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 000714 425 NEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLL 480 (1335)
Q Consensus 425 ~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nL 480 (1335)
+.+|..|+++|.+++...+...+... ...++.|+.+|+++++.++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999998766555444433 57899999999999999999999999875
No 139
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.42 E-value=0.65 Score=47.94 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=96.4
Q ss_pred HHhhcccHHHHHHHhcCCC------HHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC--ChHHHHHHHHHH
Q 000714 448 ALQGREGIQLLISLLGLSS------EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG--SAKAKEDSASIL 519 (1335)
Q Consensus 448 ~i~~~g~I~~Lv~lL~~~~------~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~--~~~v~~~Aa~aL 519 (1335)
.++..+|+..|+++++++. .++...++.++..|-.+ ....|.......|..++.+.... +..+...|..+|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 4566899999999998776 36778888888888864 34456666777788888888765 578999999999
Q ss_pred HHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 000714 520 RNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 520 ~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
.++...++.....+.+.=.++.|+..++.++++.+.++...+-.|....
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 9999987777778877778899999999999998888877776665443
No 140
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.38 E-value=15 Score=47.46 Aligned_cols=234 Identities=17% Similarity=0.228 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcH-----HHHH
Q 000714 39 KEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIP-----PLLG 113 (1335)
Q Consensus 39 k~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~-----~Lv~ 113 (1335)
....+..+..+-...+ ...+|.++.--+|.|+.-+.--...+|......|--- +....+|| .|.-
T Consensus 484 qaeVlnrmfkIftshp-eNYricqelytvpllvlnmegfPsslqvkiLkilEyA---------VtvvncvPeqELlSLCv 553 (2799)
T KOG1788|consen 484 QAEVLNRMFKIFTSHP-ENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYA---------VTVVNCVPEQELLSLCV 553 (2799)
T ss_pred hhHHHHHHHHHhccCh-HHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHH---------HhhhccCcHHHHHHHHH
Confidence 3455666666655333 3334555667778888777655555555544444322 12223443 2344
Q ss_pred hhcCCCHHH-HHHHHH-HHHHhhccCCCCccccchhhhcCChHHHHHHhhcCC---------------------------
Q 000714 114 LLKSSSAEG-QIAAAK-TIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL--------------------------- 164 (1335)
Q Consensus 114 lL~s~~~e~-~~~Aa~-aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~--------------------------- 164 (1335)
+|+.+-... +..-+. ...-++. |...++.+.+-|++..|.+.++.+.
T Consensus 554 LLqqpIssalkhtIlsffvKLIsf----DqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~~~ 629 (2799)
T KOG1788|consen 554 LLQQPISSALKHTILSFFVKLISF----DQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFKQH 629 (2799)
T ss_pred HhcchhhHHHHHHHHHHHHHHhhH----HHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhhhc
Confidence 555433211 111111 2233444 6667777888888888887776620
Q ss_pred ------------------CChhhHHHH-----HHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHH
Q 000714 165 ------------------KSGNVVDNL-----LTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLA 221 (1335)
Q Consensus 165 ------------------~~~~~v~~~-----a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~ 221 (1335)
...+..... -..+|..+-.+++.+.....++.|+..++.++ -+.+.|.....++.
T Consensus 630 ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivs 707 (2799)
T KOG1788|consen 630 LDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVS 707 (2799)
T ss_pred cccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHH
Confidence 000000000 02244455555566656677778877777777 34566777777777
Q ss_pred HHhhcCcchhhhHhccccHHHHHHHhcCCCC-----------HHHHHHHHHHHHhcccCCHHHHHHHHHCCChHHHHHHh
Q 000714 222 CMMEEDVSVCSRVLAADATKQLLKLLGSGNE-----------ASVRAEAAGALKSLSDHCKDARREIAGSNGIPAMINAT 290 (1335)
Q Consensus 222 ~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~-----------~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi~~Lv~lL 290 (1335)
+|...++. -++..-+-.++..|+++-- .+....-.++++.+-.-|...+..+.+++|...|...|
T Consensus 708 cLitvdpk----qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttL 783 (2799)
T KOG1788|consen 708 CLITVDPK----QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTL 783 (2799)
T ss_pred HHhccCcc----cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHH
Confidence 77654432 1223445577777776311 24566677888887766777888999999998888776
Q ss_pred cC
Q 000714 291 IA 292 (1335)
Q Consensus 291 ~~ 292 (1335)
..
T Consensus 784 ht 785 (2799)
T KOG1788|consen 784 HT 785 (2799)
T ss_pred HH
Confidence 44
No 141
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=94.33 E-value=1.1 Score=58.51 Aligned_cols=296 Identities=17% Similarity=0.122 Sum_probs=182.2
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccC---ChHhHH
Q 000714 414 RLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE---NDDSKW 489 (1335)
Q Consensus 414 ~~Lv~lL~~-~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~---~~~~r~ 489 (1335)
+.+...++. ...+.+..|+..|..|+..-.+.. .. .-.+|.++.++.++..++|..|+.+|+.+-.. -+..-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~--~L-DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEV--KL-DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH--HH-hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 334444433 345778899999999987654321 11 35689999999999999999999888766421 122223
Q ss_pred HHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHH----H-HHHHHHHHHH
Q 000714 490 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSAN----G-KEIAAKTLNH 563 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~----~-k~~Aa~aL~~ 563 (1335)
.|.-.-..|.|-.++.+. ...+|..=+..|..|+.. .+|-... +--.....++...+.+ . ...-..+|.+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t--A~rFle~--~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT--AYRFLEL--TQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH--HHHHHHH--HHHHHhcccccCcccccccccccchHHHHHHH
Confidence 334445678888888773 445666556677777652 2221110 0000111112221111 0 0111122222
Q ss_pred hhccCCCCcHHH-HHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000714 564 LIHKSDTATISQ-LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1335)
Q Consensus 564 L~~~~~~~~i~~-Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~n 642 (1335)
.+++ ...||.+..+-+|....+.++.||..+.... ...-.++.|+-+|.+.+..+|.+--..+..
T Consensus 578 --------~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k------sND~iLshLiTfLNDkDw~LR~aFfdsI~g 643 (1431)
T KOG1240|consen 578 --------TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK------SNDVILSHLITFLNDKDWRLRGAFFDSIVG 643 (1431)
T ss_pred --------HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc------cccchHHHHHHHhcCccHHHHHHHHhhccc
Confidence 2333 3456666667788888888888877654321 112258999999999988888777777766
Q ss_pred HhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHH
Q 000714 643 IFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQAT 722 (1335)
Q Consensus 643 L~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa 722 (1335)
++.... ..-++.+.+|.|.+-|.++.+.+...++.++..|+... ...|..+. +.++...-+|.+++..+|..++
T Consensus 644 vsi~VG---~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~ 717 (1431)
T KOG1240|consen 644 VSIFVG---WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAVK--DILQDVLPLLCHPNLWIRRAVL 717 (1431)
T ss_pred eEEEEe---eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHHH--HHHHhhhhheeCchHHHHHHHH
Confidence 654321 22256778899999999999999999999999998543 22332222 2445555678899999999999
Q ss_pred HHHHHHhCCchHHH
Q 000714 723 CALANLILDSEVSE 736 (1335)
Q Consensus 723 ~aL~nL~~~~~~~~ 736 (1335)
..+......-...+
T Consensus 718 ~iI~~~~~~ls~ad 731 (1431)
T KOG1240|consen 718 GIIAAIARQLSAAD 731 (1431)
T ss_pred HHHHHHHhhhhhhh
Confidence 98888765444433
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.19 E-value=18 Score=44.16 Aligned_cols=327 Identities=16% Similarity=0.150 Sum_probs=178.2
Q ss_pred hHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC-CCHHHHHHHHHHHHHhhhccCchh-----HHHhhcccHHHH
Q 000714 385 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLW-----RALQGREGIQLL 458 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~~Ls~~~~~~~-----~~i~~~g~I~~L 458 (1335)
.-.++...+|+.++.++...+.+.. ..+..+-...+. .+.+.....+.+|.++........ ....+...+|.+
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l 95 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRL 95 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHH
Confidence 3457888999999988876555432 223333333322 134455566666666644332222 112222357777
Q ss_pred HHHhcCC-------CHHHHHHHHHHHHHhccCCh-HhHHHHHhcCCHHHHHHhhc----------cCC--hHHHHHH---
Q 000714 459 ISLLGLS-------SEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLVQILE----------SGS--AKAKEDS--- 515 (1335)
Q Consensus 459 v~lL~~~-------~~~v~~~A~~aL~nLs~~~~-~~r~~i~~~g~I~~Lv~LL~----------~~~--~~v~~~A--- 515 (1335)
.++.-.. ++.+.+.+..++..+...-+ +..+.+. ..+..++- ..+ ...+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~-----~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (415)
T PF12460_consen 96 FELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEIL-----DELYSLFLSPKSFSPFQPSSSTISEQQSRLVIL 170 (415)
T ss_pred HHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HHHHHHHccccccCCCCccccccccccccHHHH
Confidence 7755321 24455555555555543322 2233332 23333332 111 1122222
Q ss_pred -HHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcC-CHHHHHHHHHHHHHhhccCCC-CcHHHHHHH----h-cCCCcch
Q 000714 516 -ASILRNLCNHSEDIRACVESADAVPALLWLLKNG-SANGKEIAAKTLNHLIHKSDT-ATISQLTAL----L-TSDLPES 587 (1335)
Q Consensus 516 -a~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~-~~~~k~~Aa~aL~~L~~~~~~-~~i~~Lv~L----L-~s~~~~~ 587 (1335)
..++..+-. ++.-. .....+..++.+..+. ++..+..++..++.+...-.. ..+..++.. + ....+..
T Consensus 171 ~~~il~~l~~---~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~ 246 (415)
T PF12460_consen 171 FSAILCSLRK---DVSLP-DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSEL 246 (415)
T ss_pred HHHHHHcCCc---ccCcc-CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcch
Confidence 233333322 22211 0012566677765554 466788888888888776322 223333322 2 1222222
Q ss_pred HHHH----HHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh--------HHHHH
Q 000714 588 KVYV----LDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL--------RESSI 655 (1335)
Q Consensus 588 k~~a----~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~--------~~~l~ 655 (1335)
+..+ .|....+. +.++ -.....+..|++++.+ +++...+++++.-+..+.++. .+.+.
T Consensus 247 ~~~~~~~~~Wi~KaLv-~R~~-------~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 247 RPQALEILIWITKALV-MRGH-------PLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred hHHHHHHHHHHHHHHH-HcCC-------chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 3333 33333321 1111 1123457778888865 888999999999998773332 11122
Q ss_pred h----cCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 000714 656 A----VKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1335)
Q Consensus 656 ~----~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~ 731 (1335)
+ ...+|++++.++..+......-..|+..++.+.|..-- .-.-...+|.|++-|..++.+++..+..+|..+..+
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl-~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVL-LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 2 23578888888887777777778899999987764322 122245889999999999999999999999999865
Q ss_pred c
Q 000714 732 S 732 (1335)
Q Consensus 732 ~ 732 (1335)
.
T Consensus 396 ~ 396 (415)
T PF12460_consen 396 A 396 (415)
T ss_pred C
Confidence 5
No 143
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=93.70 E-value=2.1 Score=48.34 Aligned_cols=252 Identities=10% Similarity=-0.013 Sum_probs=148.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhcc--CCHHHHHHHHHHHHHhhcCchhHHHHHh-cCCcHHHHHh
Q 000714 38 EKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRS--GSLAVKIQAATVLGSLCKENELRVKVLL-GGCIPPLLGL 114 (1335)
Q Consensus 38 ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s--~~~~vk~~aa~~L~~L~~~~~~~~~i~~-~g~I~~Lv~l 114 (1335)
.|.-|++.|.++.. ..+.|.++..++.+-..++..+++ |+.+.|.+..-.++-+..++...+.+-+ .+-+..|+++
T Consensus 165 Trlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 165 TRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888877 667888777667777888998875 6678999999999999988776533333 2457778888
Q ss_pred hcCCC-HHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHH
Q 000714 115 LKSSS-AEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATV 193 (1335)
Q Consensus 115 L~s~~-~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~ 193 (1335)
.+... .++-+.++..+.|++... ....-..+.-.|-+.+-++.|..+.-.++++..- +.++-+.-+.+...+
T Consensus 244 Vk~~~keKV~Rlc~~Iv~n~~dK~--pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d----i~~i~s~l~~~~k~l- 316 (432)
T COG5231 244 VKERAKEKVLRLCCGIVANVLDKS--PKGYIFSPLLLNDISKCVQVLLERKYSDEELVID----IERIRSRLVQNTKKL- 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH----HHHHHHHHHhhhhhh-
Confidence 77543 334556777777777611 1111223444555566666666654444332211 111111000000000
Q ss_pred hcCCHHHHHHHhcc----CChhHHHHHHHHHHHHhhcCcchhhhHhc--cccHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 000714 194 QAGGIDILVKLLTL----GQSSTQAHVCFLLACMMEEDVSVCSRVLA--ADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1335)
Q Consensus 194 ~~g~I~~Lv~lL~s----~~~~v~~~aa~~L~~La~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs 267 (1335)
-..+..+.=|.+ -+|..+.+-.+. ++...+.+ ...++.|.++++..++.....-|+.-+..+.
T Consensus 317 --~~fD~Y~~ELdsg~l~wSp~H~~~dFWs---------~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~V 385 (432)
T COG5231 317 --CIFDNYLNELDSGRLEWSPYHHKKDFWS---------TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLV 385 (432)
T ss_pred --hHHHHHHHHHhhCcccCCCcccccCchh---------hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHH
Confidence 000001111111 111111111110 12222222 3467899999998876324555666777777
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHh
Q 000714 268 DHCKDARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANI 317 (1335)
Q Consensus 268 ~~~~e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nL 317 (1335)
...++.+..+...||-..+++++.++ |+.++..|..++-.+
T Consensus 386 r~~PE~~~vl~Kyg~k~~im~L~nh~---------d~~VkfeAl~a~q~~ 426 (432)
T COG5231 386 RASPEINAVLSKYGVKEIIMNLINHD---------DDDVKFEALQALQTC 426 (432)
T ss_pred HhCchHHHHHHHhhhHHHHHHHhcCC---------CchhhHHHHHHHHHH
Confidence 77899999999999999999999886 478888888876543
No 144
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.36 E-value=5.1 Score=46.77 Aligned_cols=183 Identities=20% Similarity=0.211 Sum_probs=106.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHH--hcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc---ChhhHHH
Q 000714 458 LISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT--AAGGIPPLVQILESGSAKAKEDSASILRNLCNH---SEDIRAC 532 (1335)
Q Consensus 458 Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~--~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~---~~~~r~~ 532 (1335)
.+..+...+...|+.++..+.++..+.. ....+. ....+..+.+.++.+..+-+..|+.++.-++-. ..+....
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 3344444556677777776666543211 112221 123577888889888877777787777776653 1233333
Q ss_pred HHhcCcHHHHHHHhhcCCHH--HHHHHHHHHHHhhc--cCCCCcHHHHHHHhc---------CC----------CcchHH
Q 000714 533 VESADAVPALLWLLKNGSAN--GKEIAAKTLNHLIH--KSDTATISQLTALLT---------SD----------LPESKV 589 (1335)
Q Consensus 533 i~~~g~i~~Lv~LL~~~~~~--~k~~Aa~aL~~L~~--~~~~~~i~~Lv~LL~---------s~----------~~~~k~ 589 (1335)
+ + ...|.|...+++++.. .|..++.+|.-++. ..+...+..++..|. ++ ++.+..
T Consensus 127 ~-~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 127 F-E-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred H-H-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 3 2 3678899998887543 44555556665543 334444442222211 11 123555
Q ss_pred HHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 590 YVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 590 ~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
.++.+-+-|+...+... +.... ...++.|+.+|.+.+..+|.+|..+|+-|...
T Consensus 205 aAL~aW~lLlt~~~~~~-~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSK-LEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHhcCCHHH-HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 55555555554433322 22222 34699999999999999999999999987643
No 145
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.08 E-value=5.4 Score=46.92 Aligned_cols=195 Identities=13% Similarity=0.105 Sum_probs=139.5
Q ss_pred HhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhH-----HHHHhc--CCHHHHHHhhccCChHHHHHHHHHHHH
Q 000714 449 LQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSK-----WAITAA--GGIPPLVQILESGSAKAKEDSASILRN 521 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r-----~~i~~~--g~I~~Lv~LL~~~~~~v~~~Aa~aL~n 521 (1335)
+...+.+..|+..|..-+-+.+..++.+..++-......+ ..+.+. ..+..|+..-. ++++-..+-.+|..
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe 149 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence 4556888899999988888899999999988876443332 223321 22333333222 56677788889999
Q ss_pred HhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC-----------CcHHHHHHHhcCCCcchHHH
Q 000714 522 LCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-----------ATISQLTALLTSDLPESKVY 590 (1335)
Q Consensus 522 L~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-----------~~i~~Lv~LL~s~~~~~k~~ 590 (1335)
++++ +.....+.....+..+.+.++.++-++-..|-.++..+...+.. .-......||.+++--+|.+
T Consensus 150 c~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 9987 77788888888899999999999998888888888887655432 22334677889999999999
Q ss_pred HHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 591 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 591 a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
+...|+.+....+.......-+.+..-+..++.+|++.+..+|..|-.+.=-...+
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999998766555555556666777799999999999999999998876655544
No 146
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=92.98 E-value=2 Score=44.41 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=94.8
Q ss_pred hhcccccHHHHHHHHcCCCH------HHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCC--CHHHHHHHHHHH
Q 000714 406 KLENSEAKRLLVGLITMATN------EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLS--SEQQQECSVALL 477 (1335)
Q Consensus 406 ~i~~~g~i~~Lv~lL~~~~~------~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~--~~~v~~~A~~aL 477 (1335)
.+...+|+..|+.++.++.. +....+..++..|..+. ...|......-|..++.+.... +..+...|...|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 44567899999999988763 67788899999988765 4344566667788888888754 578999999999
Q ss_pred HHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhcc
Q 000714 478 CLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNH 525 (1335)
Q Consensus 478 ~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~ 525 (1335)
-++...++.....+.+.=-++.|+..|+..++++|.++...+..|-..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999876666667777766799999999999999999999888777654
No 147
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.78 E-value=2.2 Score=54.54 Aligned_cols=163 Identities=17% Similarity=0.218 Sum_probs=107.8
Q ss_pred hccCChHHHHHHH-HHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC---CcHHHHHHH
Q 000714 504 LESGSAKAKEDSA-SILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATISQLTAL 579 (1335)
Q Consensus 504 L~~~~~~v~~~Aa-~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~---~~i~~Lv~L 579 (1335)
+.+.+...|..|. .+|..+..+ ++... ..+.+++...+.+.+.|+..--=|...+...+. -.+..+.+-
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-~dmss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kD 100 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-EDMSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKD 100 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-CChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh
Confidence 4444444444444 355666554 22111 234455555556666665444444444443332 233445666
Q ss_pred hcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 000714 580 LTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKT 659 (1335)
Q Consensus 580 L~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~ 659 (1335)
+.+.++.++..|+..++.+ ...+.+ ...++++.+++.++++.+|+.|+.|+.++.+-.+ +...+.|.
T Consensus 101 l~d~N~~iR~~AlR~ls~l----~~~el~------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~ 167 (757)
T COG5096 101 LQDPNEEIRGFALRTLSLL----RVKELL------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGL 167 (757)
T ss_pred ccCCCHHHHHHHHHHHHhc----ChHHHH------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccH
Confidence 7788999998888888743 222222 3458999999999999999999999999995533 45567889
Q ss_pred hHHHHHhhhcCChhHHHHHHHHHHHHH
Q 000714 660 LWSVMKLLDVGSECILVEASRCLAAIF 686 (1335)
Q Consensus 660 v~~Lv~LL~~~~~~v~~~aa~aL~~L~ 686 (1335)
+..+..++.+.++.+..+|..++..+-
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 999999999999999988888877664
No 148
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=37 Score=43.06 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=125.5
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
..++.+..+|.+.++.+...|+..|.+|+......+ -+...+++++. .++..++.-...-|..+... ++.
T Consensus 243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~---~~~ 313 (948)
T KOG1058|consen 243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK------AAASTYIDLLVKESDNNVKLIVLDRLSELKAL---HEK 313 (948)
T ss_pred HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHHhhh---hHH
Confidence 356777788888888888888888888776543221 22334444443 23334444334444444321 122
Q ss_pred HHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHH-HHhhcCC------HHHHHHHHHHHH
Q 000714 490 AITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALL-WLLKNGS------ANGKEIAAKTLN 562 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv-~LL~~~~------~~~k~~Aa~aL~ 562 (1335)
.+ .|.+--++.+|.+++-+++..+......|... .+-..+. ..|- ++.++.+ ..-|+.-.+++.
T Consensus 314 il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvss--rNvediv-----~~Lkke~~kT~~~e~d~~~~yRqlLiktih 384 (948)
T KOG1058|consen 314 IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS--RNVEDIV-----QFLKKEVMKTHNEESDDNGKYRQLLIKTIH 384 (948)
T ss_pred HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhh--ccHHHHH-----HHHHHHHHhccccccccchHHHHHHHHHHH
Confidence 22 23556677888899999999999998888864 1111111 1111 1222222 223566666776
Q ss_pred HhhccCC---CCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcC-CCHHHHHHHHH
Q 000714 563 HLIHKSD---TATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS-TKEETQAKSAS 638 (1335)
Q Consensus 563 ~L~~~~~---~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s-~~~~v~~~Aa~ 638 (1335)
..+..-. ...++.|++.+.+.++..-..+...+... +...+ .+|. ..+..|++-+.. .+.++-+.++|
T Consensus 385 ~cav~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~--iek~p-~Lr~-----~ii~~l~~~~~~irS~ki~rgalw 456 (948)
T KOG1058|consen 385 ACAVKFPEVAATVVSLLLDFISDSNEAAASDVLMFVREA--IEKFP-NLRA-----SIIEKLLETFPQIRSSKICRGALW 456 (948)
T ss_pred HHhhcChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH--HHhCc-hHHH-----HHHHHHHHhhhhhcccccchhHHH
Confidence 6655422 35677788888877765433332222211 11111 1122 235555554432 57788899999
Q ss_pred HHHHHhcCChhhHHH--H--HhcCChHHHHH
Q 000714 639 ALAGIFETRKDLRES--S--IAVKTLWSVMK 665 (1335)
Q Consensus 639 aL~nL~~~~~~~~~~--l--~~~g~v~~Lv~ 665 (1335)
.++.-|....+.+.. . ...|-+|.+..
T Consensus 457 i~GeYce~~~~i~~~~k~i~~slGEvp~~~s 487 (948)
T KOG1058|consen 457 ILGEYCEGLSEIQSVIKIIRQSLGEVPIVCS 487 (948)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccccceehH
Confidence 999999886654442 2 34466665543
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.57 E-value=42 Score=43.47 Aligned_cols=140 Identities=14% Similarity=0.078 Sum_probs=108.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT 492 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~ 492 (1335)
.+-+++...+.+.++|+-.-.-|.+....+++ .++ -++..+.+=++++++.+|..|.+.++.+-. ++.-.
T Consensus 57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~--- 126 (757)
T COG5096 57 FPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LAL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLG--- 126 (757)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHH---HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHH---
Confidence 34455555577888888777777777776653 222 347778888889999999999999888862 33222
Q ss_pred hcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhcc
Q 000714 493 AAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHK 567 (1335)
Q Consensus 493 ~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~ 567 (1335)
..++++.+++.++++.+|..|+-++.++-+.++ ..+.+.|.+..+..++.+.+|.+...|..+|..+-..
T Consensus 127 --~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 127 --NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 257899999999999999999999999976544 3455688899999999999999999999999888543
No 150
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=45 Score=43.63 Aligned_cols=438 Identities=13% Similarity=0.083 Sum_probs=219.2
Q ss_pred cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhhccCCCCcc----------c
Q 000714 76 SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQGGAKDYV----------G 143 (1335)
Q Consensus 76 s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~--~e~~~~Aa~aL~~Ls~~~~~d~~----------~ 143 (1335)
+.++..|..|=.-|.++-+.+ |.++.+++...++. ..+|..|+..|.|.....-+++. .
T Consensus 15 d~d~~~R~~AE~~L~q~~K~p---------gFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 15 DSDAKERKAAEQQLNQLEKQP---------GFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEE 85 (1010)
T ss_pred CCChHHHHHHHHHHHHhhcCC---------cHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChH
Confidence 345677777766777765443 67888888876654 34688999999999874443331 1
Q ss_pred cchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhh-cCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHH
Q 000714 144 SKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLS-TSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1335)
Q Consensus 144 ~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs-~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~ 222 (1335)
.+..+++..++.++. . +..++.....+|..+- .+.++.|. |.++..-.+|++.+...--.+..++..
T Consensus 86 dk~~irenIl~~iv~----~---p~~iRvql~~~l~~Ii~~D~p~~Wp-----~l~d~i~~~Lqs~~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQ----V---PELIRVQLTACLNTIIKADYPEQWP-----GLLDKIKNLLQSQDANHVYGALLCLYQ 153 (1010)
T ss_pred HHHHHHHHHHHHHHh----C---chHHHHHHHHHHHHHHhcCCcccch-----hHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 122333333443332 2 2235555555665443 45667776 667788899999888877888888888
Q ss_pred HhhcCc----chh---hhHhccccHHHH----HHHhcCCCC--HHHHHHHHHHHHhcccCCHHHHHHHHHCCCh----HH
Q 000714 223 MMEEDV----SVC---SRVLAADATKQL----LKLLGSGNE--ASVRAEAAGALKSLSDHCKDARREIAGSNGI----PA 285 (1335)
Q Consensus 223 La~~~~----~~~---~~i~~~g~i~~L----v~lL~s~~~--~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi----~~ 285 (1335)
|....+ +.+ ..++ ....|.+ .+++..++. .+.....+.+...++.. +.-..+.+.+.+ ..
T Consensus 154 L~k~ye~k~~eeR~~l~~~v-~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~L~~~~~f~~W~~l 230 (1010)
T KOG1991|consen 154 LFKTYEWKKDEERQPLGEAV-EELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLELSAPETFTSWMEL 230 (1010)
T ss_pred HHHHHhhccccccccHHHHH-HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHHhhCchhHHHHHHH
Confidence 774322 111 1112 2233433 334444433 34555556655555531 222233333333 33
Q ss_pred HHHHhcCCCc-cchhh-------hhHHHHHHHHHHHHHHhhc--CCchhhhhhcccccCCCChhHH--HhHhhhhHHHHH
Q 000714 286 MINATIAPSK-EFMQG-------EYAQALQENAMCALANISG--GLSNVISSLGQSLESCSSPAQV--ADTLGALASALM 353 (1335)
Q Consensus 286 Lv~lL~~~~~-e~~~~-------~~d~~v~~~A~~aL~nLs~--g~~~~i~~L~~l~~~~~~~~~i--~~~~Gal~~ll~ 353 (1335)
.+.++..+.+ |.+.- ..=.+.+..|...|.++.. |.++.... +.......+ ....|.+...+.
T Consensus 231 ~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~-----~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 231 FLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVP-----EYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccch-----hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 11111 1115678889999988874 32221110 000001101 122333333333
Q ss_pred hhcccccCCCCCCchhhH-------------HHHHHhhCCCCchhHHH--------------------------------
Q 000714 354 IYDSKAESTKPSDPLIVE-------------QTLVNQFKPRLPFLVQE-------------------------------- 388 (1335)
Q Consensus 354 ~l~~~~~s~~~~~~~~i~-------------~~Lv~LL~~~~~~~~q~-------------------------------- 388 (1335)
.+.......+. ...++ ...-++++++-....+.
T Consensus 306 ~l~~~~~~~yl--s~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~e 383 (1010)
T KOG1991|consen 306 ILEQWRQQLYL--SDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFE 383 (1010)
T ss_pred HHHHHHhcccC--CHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhc
Confidence 22211111111 11111 11222222221100000
Q ss_pred ------HHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC--------CCHHHHHHHHHHHHHhhhccCc--hhHHHhhc
Q 000714 389 ------RTIEALASLYGNPLLSIKLENSEAKRLLVGLITM--------ATNEVQEELVRALLKLCNNEGS--LWRALQGR 452 (1335)
Q Consensus 389 ------~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~A~~aL~~Ls~~~~~--~~~~i~~~ 452 (1335)
.|+..+...+.... ..-.-.+.++.++..|.. .++..+..|...+.+|+..-.. .-+...+.
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR--~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~ 461 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKR--GKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY 461 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhc--chhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH
Confidence 11111111110000 000113456667777761 2445667777777777632111 11122233
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc-cCChHHHHHHHHHHHHHhccChhhHH
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SGSAKAKEDSASILRNLCNHSEDIRA 531 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~-~~~~~v~~~Aa~aL~nL~~~~~~~r~ 531 (1335)
=.++.+...++++..-+|..||+++..++..+-.....+ ..+.....+.|. +.+..++..|+-+|.-+..+.+....
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 335666667778888899999999999883211111122 224556666676 66778999999999999887555544
Q ss_pred HHHh--cCcHHHHHHHhhc
Q 000714 532 CVES--ADAVPALLWLLKN 548 (1335)
Q Consensus 532 ~i~~--~g~i~~Lv~LL~~ 548 (1335)
.+.. .+.++.|+.+.+.
T Consensus 540 ~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHh
Confidence 4433 2344555555554
No 151
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.13 E-value=7.1 Score=42.88 Aligned_cols=144 Identities=13% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHhCCcchhhhhcccccHHHHHHHHcC-----CCHHHHHHHHHHHHHhhhccCc-hhHHHhhcccHHHHHHHhc
Q 000714 390 TIEALASLYGNPLLSIKLENSEAKRLLVGLITM-----ATNEVQEELVRALLKLCNNEGS-LWRALQGREGIQLLISLLG 463 (1335)
Q Consensus 390 aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~A~~aL~~Ls~~~~~-~~~~i~~~g~I~~Lv~lL~ 463 (1335)
+..-|-.++++|+.+..+.+....-.+..+|.. +.+..|-.+.+.+..|...++. ..+.+...+.||..++.++
T Consensus 99 aL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 99 ALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 333444568899999999988877777777754 3456788899999999877654 3455667899999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCChHh----HHHHHhcCCH----HH-HHHhhccCChHHHHHHHHHHHHHhccChhhHHHHH
Q 000714 464 LSSEQQQECSVALLCLLSNENDDS----KWAITAAGGI----PP-LVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 534 (1335)
Q Consensus 464 ~~~~~v~~~A~~aL~nLs~~~~~~----r~~i~~~g~I----~~-Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~ 534 (1335)
.+++..+.-|..++..+-.+ +.+ ++..-+-.+| .. +.++.+.+++..-.+.+++..+|+. ++..|..+.
T Consensus 179 ~GSelSKtvA~fIlqKIlld-D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-nprar~aL~ 256 (293)
T KOG3036|consen 179 SGSELSKTVATFILQKILLD-DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRARAALR 256 (293)
T ss_pred cccHHHHHHHHHHHHHHhhc-cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 99999999999999887643 332 2222222222 22 2345566788899999999999987 588887765
Q ss_pred h
Q 000714 535 S 535 (1335)
Q Consensus 535 ~ 535 (1335)
.
T Consensus 257 ~ 257 (293)
T KOG3036|consen 257 S 257 (293)
T ss_pred h
Confidence 4
No 152
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.02 E-value=8.9 Score=50.64 Aligned_cols=278 Identities=15% Similarity=0.098 Sum_probs=158.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHhhcC---cchhhhHhccccHHHHHHHhcC
Q 000714 173 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMMEED---VSVCSRVLAADATKQLLKLLGS 249 (1335)
Q Consensus 173 ~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~---~~~~~~i~~~g~i~~Lv~lL~s 249 (1335)
.+...|..|+...+.. ..=...+|-++.++.++...+|..|..+|..+.... +..-..+.-+=.+|.|-.++.+
T Consensus 442 ~ALeLl~~lS~~i~de---~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 442 AALELLQELSTYIDDE---VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred HHHHHHHHHhhhcchH---HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 3566667776432221 112467899999999999999999999887765221 1111222333455666667766
Q ss_pred CCCHHHHHHHHHHHHhcccCCH---HHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhhcCCchhhh
Q 000714 250 GNEASVRAEAAGALKSLSDHCK---DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANISGGLSNVIS 326 (1335)
Q Consensus 250 ~~~~~vr~~Aa~aL~nLs~~~~---e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs~g~~~~i~ 326 (1335)
.+...+|..-|..|..|+..-. +.-+.+.+.| ++..++.+.++.
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g-------~~n~~nset~~~-------------------------- 565 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAG-------MLNDPNSETAPE-------------------------- 565 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcc-------cccCcccccccc--------------------------
Confidence 4444688888888888874110 0111111111 111221100000
Q ss_pred hhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhh
Q 000714 327 SLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIK 406 (1335)
Q Consensus 327 ~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~ 406 (1335)
.......+++.. .+....+.|+...+ ..+|....+.+.-||..= .+.
T Consensus 566 ------------~~~~~~~~~L~~------------------~V~~~v~sLlsd~~-~~Vkr~Lle~i~~LC~FF--Gk~ 612 (1431)
T KOG1240|consen 566 ------------QNYNTELQALHH------------------TVEQMVSSLLSDSP-PIVKRALLESIIPLCVFF--GKE 612 (1431)
T ss_pred ------------cccchHHHHHHH------------------HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHh--hhc
Confidence 000011122111 23344455554444 347777777777665410 000
Q ss_pred hcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChH
Q 000714 407 LENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDD 486 (1335)
Q Consensus 407 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~ 486 (1335)
=.+.-.++.|+..|.+.++..|-.-...+..+|..-+. + -++..-+|.|.+-|.++.+.+...|+++|..|....--
T Consensus 613 ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~--r-s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 613 KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW--R-SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee--e-eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhccc
Confidence 01123567889999999888887666666666544322 1 12345688899999999999999999999988853222
Q ss_pred hHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 487 ~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
.+..+.+ .++...-+|-.++.-+|..++.+|...++
T Consensus 690 ~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 690 RKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred chHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 2333333 34444456777888899999988887765
No 153
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.22 E-value=3.3 Score=51.37 Aligned_cols=130 Identities=16% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcC
Q 000714 416 LVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG 495 (1335)
Q Consensus 416 Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g 495 (1335)
++...+ ++...++-|+..+...-..-++.. ..++..++++.++.+..+|..|...|-.+|.++++....++
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kva--- 98 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVA--- 98 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHH---
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHH---
Confidence 344433 578899999999988877766543 37789999999999999999999999999987777666554
Q ss_pred CHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh---cCCHHHHHHHHHHHHHh
Q 000714 496 GIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK---NGSANGKEIAAKTLNHL 564 (1335)
Q Consensus 496 ~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~---~~~~~~k~~Aa~aL~~L 564 (1335)
..|+++|.+.++......-.+|..|-..++ .+.+..+..-+. .++..+|+.+...|..=
T Consensus 99 --DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 99 --DVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp --HHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 589999999887777667777777766544 334555555554 67777888888777543
No 154
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.11 E-value=22 Score=44.77 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=96.6
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHH-hcCCCHHHHHHHHHHHHHhccCChHhHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
++-+.+-+++.+.++-.|..-+..+.---....+ .++|..|++. .++.++++++.|+.+|.-++..+++
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--- 588 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--- 588 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---
Confidence 3444555677777777776554444322122111 3667778876 5677999999999999998877777
Q ss_pred HHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccC
Q 000714 490 AITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~ 568 (1335)
..|..|.+|... ++.+|..++.+|+-.|.. ...+.. +..|-.+..+...-+|+-|.-++.-+....
T Consensus 589 ------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-tG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 589 ------QLPSTVSLLSESYNPHVRYGAAMALGIACAG-TGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred ------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC-CCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 566777877655 899999999999887764 333333 344444455555567877777766554332
Q ss_pred -CC------CcHHHHHHHhcCCCcc
Q 000714 569 -DT------ATISQLTALLTSDLPE 586 (1335)
Q Consensus 569 -~~------~~i~~Lv~LL~s~~~~ 586 (1335)
+. +...++.+++.+..++
T Consensus 656 t~~~~pkv~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 656 TEQLCPKVNGFRKQLEKVINDKHED 680 (929)
T ss_pred ccccCchHHHHHHHHHHHhhhhhhH
Confidence 21 2234455555554444
No 155
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=90.97 E-value=1.8 Score=48.44 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhh
Q 000714 426 EVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQIL 504 (1335)
Q Consensus 426 ~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL 504 (1335)
.....|+..|..+|--++..+....+..++..|+.+|+ ...+.++..++.+|..+-.+++.+.+.+.+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34566788999999999998888888999999999995 45688999999888777667899999999999999999999
Q ss_pred ccC--ChHHHHHHHHHHHHHhcc
Q 000714 505 ESG--SAKAKEDSASILRNLCNH 525 (1335)
Q Consensus 505 ~~~--~~~v~~~Aa~aL~nL~~~ 525 (1335)
++. +.+++-.++..|+-....
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcc
Confidence 977 578888888888766554
No 156
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.50 E-value=8.2 Score=48.37 Aligned_cols=100 Identities=21% Similarity=0.229 Sum_probs=72.3
Q ss_pred hhcchHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh-cCChhHHHHHHHHHHHHHccCh
Q 000714 613 AANDAVETMIKI-LSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVR 690 (1335)
Q Consensus 613 ~~~~~i~~Lv~L-L~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~-~~~~~v~~~aa~aL~~L~~~~~ 690 (1335)
..+++|..|... .++.|+++|++|..+|+-++...++ ..+..+.+|. +.++.++--+|++++--|.+..
T Consensus 551 gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 551 GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred CchhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Confidence 346778888887 5778999999999999998887665 3566677774 4688888888888887776543
Q ss_pred hhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 691 ENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 691 ~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
... ++..|-.+.++...-||..|.-+++-+.
T Consensus 622 ~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 622 LKE--------AINLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred cHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 211 2333444556777778888888887765
No 157
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=90.14 E-value=1.7 Score=41.41 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHH--hcCCHHHHHHhhc
Q 000714 428 QEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT--AAGGIPPLVQILE 505 (1335)
Q Consensus 428 ~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~--~~g~I~~Lv~LL~ 505 (1335)
|+.++.+|...+..-+....... ..-+++++..+.+++..++..|+.+|.|++.. .+..+. -....+.|.+++.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSA 78 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence 34445555555444333222222 35689999999999999999999999999853 233332 2346778888888
Q ss_pred cCChHHHHHHHHHHHHHhc
Q 000714 506 SGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 506 ~~~~~v~~~Aa~aL~nL~~ 524 (1335)
+.++.+|. ++..|-++-+
T Consensus 79 D~d~~Vr~-~a~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRS-AAELLDRLLK 96 (97)
T ss_pred CCchhHHH-HHHHHHHHhc
Confidence 88888886 5566766543
No 158
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.45 E-value=0.75 Score=45.11 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=63.6
Q ss_pred cchHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHcc
Q 000714 615 NDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLS 688 (1335)
Q Consensus 615 ~~~i~~Lv~LL-~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~ 688 (1335)
...+..|+++| .+.++.+...|+.=|+.++...|..+..+.+.|+-..+++|+.+++++++.+|..|+-.++..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 45689999999 456788889999999999999898888888899999999999999999999999999887753
No 159
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.29 E-value=3.6 Score=46.17 Aligned_cols=99 Identities=18% Similarity=0.125 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh-cCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHH
Q 000714 630 EETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD-VGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 708 (1335)
Q Consensus 630 ~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~-~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~ 708 (1335)
+.....|.+.|-.+|.-+++.+..+.....+..++.+|. ...+.++..+..++.+++..++.+.| .+.+.+|+..++.
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r-~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQR-DFEELNGLSTVCS 183 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHH-HHHHhCCHHHHHH
Confidence 344567889999999998999999999999999999994 46778899999999999999999999 6999999999999
Q ss_pred HhcC--CCHHHHHHHHHHHHHHh
Q 000714 709 LAGS--PVLEVAEQATCALANLI 729 (1335)
Q Consensus 709 lL~~--~~~~vk~~Aa~aL~nL~ 729 (1335)
++++ .+.++|...+.-|+-.+
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHH
Confidence 9987 45667777777666554
No 160
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=89.22 E-value=1.6 Score=54.21 Aligned_cols=103 Identities=19% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCch-hHH
Q 000714 22 VAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE-LRV 100 (1335)
Q Consensus 22 v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~-~~~ 100 (1335)
.......+....++..+|+.|...+..+.+.-+...+ .++..++.++.+.+..+|.+|.+.|-.+|+++. .-.
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~------~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQE------EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHH------HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHH------HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 3445555555556778888888888888887665443 578999999999999999999999999998753 334
Q ss_pred HHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 000714 101 KVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 101 ~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
++ +..|+++|.++++......-.+|..+-.
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 43 4678999998886665555566665555
No 161
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=89.10 E-value=12 Score=44.75 Aligned_cols=84 Identities=19% Similarity=0.262 Sum_probs=57.9
Q ss_pred CCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHH-HHHHHHHHHHHhhhccCchhHHHhhcccHHHH
Q 000714 380 PRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNE-VQEELVRALLKLCNNEGSLWRALQGREGIQLL 458 (1335)
Q Consensus 380 ~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~L 458 (1335)
++.+..+|..++..|+.-+.+++.+..+...|..+.++..+...... +-..++.++..+..........+.+.+....+
T Consensus 32 ~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 32 SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 44455688899999999999999999999999999999998544333 44444444444433333333334455666777
Q ss_pred HHHhc
Q 000714 459 ISLLG 463 (1335)
Q Consensus 459 v~lL~ 463 (1335)
+.+++
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 88887
No 162
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.03 E-value=12 Score=44.78 Aligned_cols=187 Identities=14% Similarity=0.078 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCCh--HHHHHhcccCCcHHHHHHHhcc-CCHHHHHHHHHHHHHhhcC
Q 000714 19 LASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE--NAFSAVGSHSQAVPVLVSLLRS-GSLAVKIQAATVLGSLCKE 95 (1335)
Q Consensus 19 ~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~--~ar~~i~~~~g~v~~Lv~lL~s-~~~~vk~~aa~~L~~L~~~ 95 (1335)
..-|++++..++.. ...+++..|+..|..+..++. ...+.+ ...+..++..|.+ .++..|..|.++|..+|.+
T Consensus 285 ~~~v~~~l~~~~g~-e~a~~~k~alsel~~m~~e~sfsvWeq~f---~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 285 SALVADLLKEISGS-ERASERKEALSELPKMLCEGSFSVWEQHF---AEILLLLLEVLSDSEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred hHHHHHHHHhccCc-cchhHHHHHHHHHHHHHHccchhHHHHHH---HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHh
Confidence 44566666666543 355788999999999977552 233333 2345667777776 6777899999999999977
Q ss_pred chhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHH-HHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHH
Q 000714 96 NELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTI-YAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLL 174 (1335)
Q Consensus 96 ~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL-~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a 174 (1335)
...+..=-.+-+|..++..-++..+++-..|.... .-++. ...- -.|..+..++.. ..++ ....+
T Consensus 361 Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las----~~P~-------~~I~~i~~~Ilt--~D~~-~~~~~ 426 (516)
T KOG2956|consen 361 QPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLAS----HLPL-------QCIVNISPLILT--ADEP-RAVAV 426 (516)
T ss_pred chHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHh----hCch-------hHHHHHhhHHhc--Ccch-HHHHH
Confidence 65443222234567777777777777755555554 33443 2111 112333333333 1222 22223
Q ss_pred HHHHHHhhcCChh-hHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHHHh
Q 000714 175 TGALRNLSTSTEG-FWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLACMM 224 (1335)
Q Consensus 175 ~~aL~nLs~~~~~-~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La 224 (1335)
...+..++..-+. ....++ ....|.+++...+.+..+|..+..+|..+.
T Consensus 427 iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 427 IKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 3334444422111 111122 477888999999999999999998886553
No 163
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=88.23 E-value=25 Score=42.06 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=58.9
Q ss_pred CHHHHHHHhcc-CChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHH
Q 000714 197 GIDILVKLLTL-GQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARR 275 (1335)
Q Consensus 197 ~I~~Lv~lL~s-~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~ 275 (1335)
-|+.++.-+.+ .+..+|+.++.-|+.-+ .++..+..+.+.|.++.+++.+....+...-..++.++..+-..+..+-.
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 34555555553 34467777776666554 45668899999999999999996655533444444444444433444444
Q ss_pred HHHHCCChHHHHHHhc
Q 000714 276 EIAGSNGIPAMINATI 291 (1335)
Q Consensus 276 ~i~~~Ggi~~Lv~lL~ 291 (1335)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4445566677677776
No 164
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.42 E-value=1.1 Score=43.91 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=60.0
Q ss_pred ccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhc
Q 000714 453 EGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 453 g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~ 524 (1335)
..+..|+++|. +.++.+..-|+.=|+.+..+.|..|..+.+.|+-..+.+++.+++++++..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44788999994 4567777888888899988889999999999999999999999999999999999987754
No 165
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=87.38 E-value=83 Score=40.95 Aligned_cols=179 Identities=16% Similarity=0.166 Sum_probs=120.1
Q ss_pred HHHHH-cCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhc
Q 000714 416 LVGLI-TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAA 494 (1335)
Q Consensus 416 Lv~lL-~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~ 494 (1335)
.++.+ .+..+.++..|+++++..|..+. .... ..+.+..|.++....+.++.-.-..+|+..++.+++ ...-.++
T Consensus 495 ~v~~l~~~~~~~~ki~a~~~~~~~~~~~v--l~~~-~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpe-f~as~~s 570 (1005)
T KOG2274|consen 495 TVNALTMDVPPPVKISAVRAFCGYCKVKV--LLSL-QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPE-FAASMES 570 (1005)
T ss_pred HHHhhccCCCCchhHHHHHHHHhccCcee--cccc-chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChh-hhhhhhc
Confidence 34433 34456788888888888874321 1112 135577788888878888888888999999876666 3444556
Q ss_pred CCHHHHHHhhcc--CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCC----HHHHHHHHHHHHHhhccC
Q 000714 495 GGIPPLVQILES--GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGS----ANGKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 495 g~I~~Lv~LL~~--~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~----~~~k~~Aa~aL~~L~~~~ 568 (1335)
...|.++.+... .+|.+-..+-.++..|+.. ..+..-+. .-.+|.++..+.... ......+...|..+.+..
T Consensus 571 kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~t 648 (1005)
T KOG2274|consen 571 KICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNT 648 (1005)
T ss_pred chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcC
Confidence 677777776653 3676767777777777763 33333222 347899999998866 444567778888777776
Q ss_pred CCC--------cHHHHHHH-hcCCCcchHHHHHHHHHHhhh
Q 000714 569 DTA--------TISQLTAL-LTSDLPESKVYVLDALKSMLS 600 (1335)
Q Consensus 569 ~~~--------~i~~Lv~L-L~s~~~~~k~~a~~aL~~L~~ 600 (1335)
.+. ..+++.+. +++++.++..++-+||..+..
T Consensus 649 p~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 649 PSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred CCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 542 22333333 788999999999999998744
No 166
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=87.31 E-value=13 Score=45.09 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=105.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCH----HHHHHHHHHHHHhhccCCCCcc
Q 000714 67 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSA----EGQIAAAKTIYAVSQGGAKDYV 142 (1335)
Q Consensus 67 v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~----e~~~~Aa~aL~~Ls~~~~~d~~ 142 (1335)
...+..++.+++...|..+...|..++.+...-..++...++..|.++..+++. +....++.++..+.. ...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme----hgv 160 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME----HGV 160 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh----hce
Confidence 377899999999999999999999999999988999999999999999998764 334445555544443 111
Q ss_pred ccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHH
Q 000714 143 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1335)
Q Consensus 143 ~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~ 222 (1335)
..-..+...+|-....+.+.. ..+..+-..+...|.++...++.....+.+.--++.|+..+...+..++..|...+-.
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~-~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAK-REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhh-hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 001111222233334444222 2222244456677777777777777888888999999999999999888886666544
Q ss_pred Hh
Q 000714 223 MM 224 (1335)
Q Consensus 223 La 224 (1335)
+.
T Consensus 240 l~ 241 (713)
T KOG2999|consen 240 LF 241 (713)
T ss_pred HH
Confidence 43
No 167
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.93 E-value=9.8 Score=40.55 Aligned_cols=88 Identities=25% Similarity=0.246 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCc-HHHHHhhc
Q 000714 38 EKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCI-PPLLGLLK 116 (1335)
Q Consensus 38 ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I-~~Lv~lL~ 116 (1335)
-|-.++..+..|+..-+. .+ +..+|.+...|+++++.+|..|...|.+|..++-.+.+ |.+ ..++.++.
T Consensus 4 vR~n~i~~l~DL~~r~~~---~v---e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~l~ 73 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPN---LV---EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHhCcH---HH---HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHHHc
Confidence 455677777777763332 22 45689999999999999999999999999765433222 444 78888999
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 000714 117 SSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 117 s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
+++++++..|...+.++..
T Consensus 74 D~~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLK 92 (178)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988
No 168
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.66 E-value=20 Score=38.26 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC---CcH-HHHHHHhcCC
Q 000714 508 SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT---ATI-SQLTALLTSD 583 (1335)
Q Consensus 508 ~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~---~~i-~~Lv~LL~s~ 583 (1335)
++.+|.+++.+++.|+..-+..-+ ..++.+...|+++++.+|+.|..+|.+|....-- +.+ ..++.++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 477899999999999875443332 3578999999999999999999999999876421 333 6677888889
Q ss_pred CcchHHHHHHHHHHhhh
Q 000714 584 LPESKVYVLDALKSMLS 600 (1335)
Q Consensus 584 ~~~~k~~a~~aL~~L~~ 600 (1335)
+++++..|..++..+..
T Consensus 76 ~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLK 92 (178)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999888887644
No 169
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=86.65 E-value=3.6 Score=44.33 Aligned_cols=117 Identities=18% Similarity=0.073 Sum_probs=80.4
Q ss_pred HHHHHHHHHhcCChHHHHHhccc--------------CCcHHHHHHHhcc------CCHHHHHHHHHHHHHhhcCchhHH
Q 000714 41 YSLRQLLELIDTRENAFSAVGSH--------------SQAVPVLVSLLRS------GSLAVKIQAATVLGSLCKENELRV 100 (1335)
Q Consensus 41 ~Al~~L~~Ls~~~~~ar~~i~~~--------------~g~v~~Lv~lL~s------~~~~vk~~aa~~L~~L~~~~~~~~ 100 (1335)
.++..|.++++..+.++.++... ..++..|+..+.. ...+.-.+.+.+|.|+++-++.|.
T Consensus 14 l~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~ 93 (192)
T PF04063_consen 14 LACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQ 93 (192)
T ss_pred HHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHH
Confidence 45555556665444444333322 2356777777754 223456789999999999999998
Q ss_pred HHHhc--CC--cHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhc---CChHHHHHHhh
Q 000714 101 KVLLG--GC--IPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTE---GVVPVLWEQLK 161 (1335)
Q Consensus 101 ~i~~~--g~--I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~---G~Ip~Lv~LL~ 161 (1335)
-++.. +. +..|+..+.+.+..-|.-++.+|+|.|+ +......+... +.+|.|+--|.
T Consensus 94 ~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF----d~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 94 FFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF----DTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc----cHhHHHHhcCchhhhhHHHHHhhcc
Confidence 88874 34 7788888888888889999999999999 66666655543 44565555555
No 170
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=86.51 E-value=76 Score=37.48 Aligned_cols=213 Identities=11% Similarity=0.114 Sum_probs=138.7
Q ss_pred HHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhh
Q 000714 533 VESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGS 612 (1335)
Q Consensus 533 i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i 612 (1335)
+.+.+.+..|+..|..-+.+.|+.++....++.+....+...+-+..+....
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~---------------------------- 123 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHR---------------------------- 123 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT------------------------------
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCC----------------------------
Confidence 3346788999999999999999988888888876532111101111111000
Q ss_pred hhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhh
Q 000714 613 AANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVREN 692 (1335)
Q Consensus 613 ~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~ 692 (1335)
...+..|++-- +++++--.+...|....+. +...+.+.....+..+.+..+.++=++...|...+..++...+..
T Consensus 124 --peil~~L~~gy--~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~ 198 (335)
T PF08569_consen 124 --PEILDILLRGY--ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKL 198 (335)
T ss_dssp --THHHHHHHHGG--GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHH
T ss_pred --HHHHHHHHHHh--cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHH
Confidence 11223333322 3555666677777777766 666777778888899999999999999999999999988765543
Q ss_pred hHHHHHhCC---ChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHH---HHH-HCCChHHHHHHhhcCChhhHHHHHHH
Q 000714 693 REVAAVARD---ALSPLVVLAGSPVLEVAEQATCALANLILDSEVSE---KAI-AEEIILPATRVLCEGTISGKTLAAAA 765 (1335)
Q Consensus 693 ~~~~i~~~g---~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~---~~~-~~g~v~~L~~ll~~~~~~~k~~A~~a 765 (1335)
.. .++..+ .......++.+++.-+|+++...|..|..|+.... .++ +..-+..++.++++.+...+-+|-..
T Consensus 199 ~a-~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv 277 (335)
T PF08569_consen 199 VA-EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV 277 (335)
T ss_dssp HH-HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH
Confidence 22 244332 44567789999999999999999999997776654 444 34566677777777777777777777
Q ss_pred HHHHhhcCCCchhH
Q 000714 766 IARLLHSRKIDYTI 779 (1335)
Q Consensus 766 L~~Ll~~~~~~~~~ 779 (1335)
+--....+.....+
T Consensus 278 FKvFVANp~K~~~I 291 (335)
T PF08569_consen 278 FKVFVANPNKPPPI 291 (335)
T ss_dssp HHHHHH-SS-BHHH
T ss_pred HHHHHhCCCCChHH
Confidence 76666665544444
No 171
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.14 E-value=9.6 Score=44.32 Aligned_cols=179 Identities=20% Similarity=0.187 Sum_probs=111.3
Q ss_pred CHHHHH-HhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHH
Q 000714 496 GIPPLV-QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATIS 574 (1335)
Q Consensus 496 ~I~~Lv-~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~ 574 (1335)
.+..|+ ..+++.++.+|+.+..+|+-.+-.+++.... .++.+...++.+++.++..|.+++..+....+...+.
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 4677889999999999999998876544432 3677778887788889999999998886543211100
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHH
Q 000714 575 QLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESS 654 (1335)
Q Consensus 575 ~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l 654 (1335)
..... . ........+..+.+++.+.+++++..++..++.|.....-.-
T Consensus 102 -------~~~~~-----------------~-----~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--- 149 (298)
T PF12719_consen 102 -------SESDN-----------------D-----ESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD--- 149 (298)
T ss_pred -------chhcc-----------------C-----ccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---
Confidence 00000 0 011223457788889999999999999999999886632111
Q ss_pred HhcCChHHHHHhhhc----CChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCC
Q 000714 655 IAVKTLWSVMKLLDV----GSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPV 714 (1335)
Q Consensus 655 ~~~g~v~~Lv~LL~~----~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~ 714 (1335)
....+..|+-++-+ .+...+.--...+-..+.+.+.+++ .+.+..++.+..+.+...
T Consensus 150 -~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~--~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 150 -PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPENQE--RLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred -HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHHhCcc
Confidence 13345555555533 2233333333444444445444544 666778888888777643
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.73 E-value=12 Score=47.75 Aligned_cols=184 Identities=15% Similarity=0.082 Sum_probs=115.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchh
Q 000714 68 PVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIF 147 (1335)
Q Consensus 68 ~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l 147 (1335)
..-+..+.+....+|-++.+.|.++.++.+....+...+.+...+..|++.++-+--.|...+..+|. +
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-----------v 798 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-----------V 798 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-----------h
Confidence 44555666777789999999999999877666667778899999999999998877777777777766 3
Q ss_pred hhcCChHHHHH-HhhcCCCChhhHHHHHHHHHHHhhcCC----hhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHH
Q 000714 148 STEGVVPVLWE-QLKNGLKSGNVVDNLLTGALRNLSTST----EGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1335)
Q Consensus 148 ~~~G~Ip~Lv~-LL~~~~~~~~~v~~~a~~aL~nLs~~~----~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~ 222 (1335)
+.+..+|.|.+ ..+.........+-.+-.++.++...- -.++. -.+...++..++++...|..++..+++
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-----~Li~tfl~gvrepd~~~RaSS~a~lg~ 873 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-----VLINTFLSGVREPDHEFRASSLANLGQ 873 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-----HHHHHHHHhcCCchHHHHHhHHHHHHH
Confidence 44677888887 444432221110001112333332111 12222 234456666676777778888888887
Q ss_pred HhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 000714 223 MMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1335)
Q Consensus 223 La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~ 268 (1335)
++....-..... =..++..++.+...+...-+|+.|+..+..+-.
T Consensus 874 Lcq~~a~~vsd~-~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 874 LCQLLAFQVSDF-FHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHhhhhhHH-HHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 762211111111 133455666777766667889999998887764
No 173
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.65 E-value=51 Score=36.55 Aligned_cols=154 Identities=15% Similarity=0.190 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-----ChHHHHHHHHHHHHHhccCh-hhHHHHHhcCcHHH
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-----SAKAKEDSASILRNLCNHSE-DIRACVESADAVPA 541 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-----~~~v~~~Aa~aL~nL~~~~~-~~r~~i~~~g~i~~ 541 (1335)
.=..+|...|..+++ +++.|..+.++..---|-.+|... ..-.|..+.++++.|.+.++ +.-..+...+++|.
T Consensus 94 nRVcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 445677788888886 588899988876643444444433 35678899999999998643 45566778999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHH
Q 000714 542 LLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETM 621 (1335)
Q Consensus 542 Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~L 621 (1335)
.++.+..|+...|..|.-.+.++..+. .-..|++...-....+ ...+..+
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD-----------------~GL~YiCqt~eRF~av-------------~~~L~km 222 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDD-----------------VGLYYICQTAERFSAV-------------ALVLGKM 222 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhcc-----------------ccHHHHHHhHHHHHHH-------------HHHHHHH
Confidence 999999999999998888887775422 1122333322211100 1124444
Q ss_pred HH-hhcCCCHHHHHHHHHHHHHHhcCChhhHHH
Q 000714 622 IK-ILSSTKEETQAKSASALAGIFETRKDLRES 653 (1335)
Q Consensus 622 v~-LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~ 653 (1335)
+. +.+.++..+.....++..+|+.+ +..|..
T Consensus 223 v~~l~~~ps~RllKhviRcYlrLsdn-prar~a 254 (293)
T KOG3036|consen 223 VFQLVSMPSPRLLKHVIRCYLRLSDN-PRARAA 254 (293)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 43 44667889999999999999977 554443
No 174
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.60 E-value=1.4 Score=32.23 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.3
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 000714 618 VETMIKILSSTKEETQAKSASALAGIFE 645 (1335)
Q Consensus 618 i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~ 645 (1335)
+|.+.++++++++++|..|+.+|++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999975
No 175
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.35 E-value=6.2 Score=49.99 Aligned_cols=139 Identities=12% Similarity=0.174 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhCCcchhhhhccc--------ccHHHHHHHH----cCCCHHHHHHHHHHHHHhhhccCchhHHHhhc-
Q 000714 386 VQERTIEALASLYGNPLLSIKLENS--------EAKRLLVGLI----TMATNEVQEELVRALLKLCNNEGSLWRALQGR- 452 (1335)
Q Consensus 386 ~q~~aa~aL~~L~~~~~~~~~i~~~--------g~i~~Lv~lL----~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~- 452 (1335)
+-.+|...|.-+..-|+++..+.+. .|+..++..- .-.++++++.|+.++.|+.+..+..|..++..
T Consensus 625 ~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v 704 (1516)
T KOG1832|consen 625 LLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAV 704 (1516)
T ss_pred HHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhc
Confidence 4566777777667777777666532 2444433321 12378999999999999988887766644311
Q ss_pred c---cHHHHHHHhcCC-CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCC-----hHHHHHHHHHHHHHh
Q 000714 453 E---GIQLLISLLGLS-SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS-----AKAKEDSASILRNLC 523 (1335)
Q Consensus 453 g---~I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~-----~~v~~~Aa~aL~nL~ 523 (1335)
| |-+.. .+..+ .....++... .....+....||..|++||+-.. ..+|.-|+.+|.-|+
T Consensus 705 ~S~~g~~r~--~l~~~~ks~~le~~l~----------~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLa 772 (1516)
T KOG1832|consen 705 GSQSGDRRI--FLGAGTKSAKLEQVLR----------QMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLA 772 (1516)
T ss_pred cccCCCccc--cccCCCchHHHHHHHH----------HHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccc
Confidence 0 00000 11111 1112222222 22344556789999999998552 457889999999999
Q ss_pred ccChhhHHHHHhcC
Q 000714 524 NHSEDIRACVESAD 537 (1335)
Q Consensus 524 ~~~~~~r~~i~~~g 537 (1335)
++ ++.|..+.+--
T Consensus 773 R~-~tVrQIltKLp 785 (1516)
T KOG1832|consen 773 RD-DTVRQILTKLP 785 (1516)
T ss_pred cC-cHHHHHHHhCc
Confidence 96 88888876633
No 176
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.30 E-value=30 Score=41.59 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhcc-CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHh
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL 546 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~-~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL 546 (1335)
+-++.|..-|-.+........|.-.-...+..+++.|.+ .+...+.-|.++|..++... ..|-.=-..=++..+++.-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-PARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-hHhhhchHHHHHHHHHHHH
Confidence 445555554444433443334432223356678888887 57788999999999999852 2221100122456666666
Q ss_pred hcCCHHHHHHHHHH-HHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhh
Q 000714 547 KNGSANGKEIAAKT-LNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL 625 (1335)
Q Consensus 547 ~~~~~~~k~~Aa~a-L~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL 625 (1335)
++..+.+-..|... +.-++.......|..+..++.+.++..-..++..+..+.--.+..+ +...+ ....|.+++-.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~Ee-L~~ll--~diaP~~iqay 457 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEE-LLNLL--PDIAPCVIQAY 457 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHH-HHHhh--hhhhhHHHHHh
Confidence 77777766555554 4455554444667777777776666654555555554432222222 22212 45688888888
Q ss_pred cCCCHHHHHHHHHHHHHHhcC
Q 000714 626 SSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 626 ~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
.+.+..+|..|+.+|..+...
T Consensus 458 ~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 458 DSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred cCchHHhhhhHHHhHHHHHHH
Confidence 899999999999999988743
No 177
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.14 E-value=75 Score=36.16 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=104.1
Q ss_pred CCHHHHHHhhccC--ChHHHHHHHHHHHHHhccC-------hhhHHHHHhcCcHHHHHHHhhcCCH----HHHHHHHHHH
Q 000714 495 GGIPPLVQILESG--SAKAKEDSASILRNLCNHS-------EDIRACVESADAVPALLWLLKNGSA----NGKEIAAKTL 561 (1335)
Q Consensus 495 g~I~~Lv~LL~~~--~~~v~~~Aa~aL~nL~~~~-------~~~r~~i~~~g~i~~Lv~LL~~~~~----~~k~~Aa~aL 561 (1335)
|..+.+..++-.| ++...+.+...|..|.... .+.|-.+.=-+.+|.++.-+.++++ ..-...|..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 4455555555555 5667778888888887641 1123333223456777777777761 3345677889
Q ss_pred HHhhccCCCCcHHHHHHHhcCCCcc-hHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHH
Q 000714 562 NHLIHKSDTATISQLTALLTSDLPE-SKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASAL 640 (1335)
Q Consensus 562 ~~L~~~~~~~~i~~Lv~LL~s~~~~-~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL 640 (1335)
..++.......+..+......+... .+.....+...+....-.. .....+..|+++|..+.+.++......|
T Consensus 140 a~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 140 AQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-------HEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred HHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 9998776666666666655443333 2233333333222111000 0134578899999999999999999999
Q ss_pred HHHhcCChhhHHHHHhcCChHHHHHhhhcCChh
Q 000714 641 AGIFETRKDLRESSIAVKTLWSVMKLLDVGSEC 673 (1335)
Q Consensus 641 ~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~ 673 (1335)
..+.... +.+.. .....+.++.+++++.--.
T Consensus 213 ~~ll~~~-d~~~~-~~~dlispllrlL~t~~~~ 243 (262)
T PF14225_consen 213 KVLLPHV-DMRSP-HGADLISPLLRLLQTDLWM 243 (262)
T ss_pred HHHhccc-cCCCC-cchHHHHHHHHHhCCccHH
Confidence 9998773 33322 4455788899999765543
No 178
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=85.03 E-value=1.4 Score=32.19 Aligned_cols=28 Identities=36% Similarity=0.602 Sum_probs=25.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhc
Q 000714 67 VPVLVSLLRSGSLAVKIQAATVLGSLCK 94 (1335)
Q Consensus 67 v~~Lv~lL~s~~~~vk~~aa~~L~~L~~ 94 (1335)
+|.+++++++.++++|..|+..|+.+++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999874
No 179
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=84.97 E-value=97 Score=40.83 Aligned_cols=213 Identities=17% Similarity=0.212 Sum_probs=125.5
Q ss_pred HhhcccHHHHHHHhcC-----CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc----cCC----hHHHHHH
Q 000714 449 LQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE----SGS----AKAKEDS 515 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~-----~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~----~~~----~~v~~~A 515 (1335)
+.+.||+..|++++.+ .........+..|..++. .+.+|+.+.+.|+++.|+..|. .+. .++-+..
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 5568999999998874 234566667788888885 6899999999999999998775 323 5666777
Q ss_pred HHHHHHHhccChhhHHHH------Hh-cC----c---HHHHHHHhhcC----CHHHHHHHHHHHHHhhccCCCCcHHHHH
Q 000714 516 ASILRNLCNHSEDIRACV------ES-AD----A---VPALLWLLKNG----SANGKEIAAKTLNHLIHKSDTATISQLT 577 (1335)
Q Consensus 516 a~aL~nL~~~~~~~r~~i------~~-~g----~---i~~Lv~LL~~~----~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv 577 (1335)
..++..|... .....+ .. .| . +..+++.+.+. ++...+..++.|-.|+...+ .....|+
T Consensus 192 L~IiE~ll~e--a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~-e~m~~Lv 268 (802)
T PF13764_consen 192 LEIIESLLSE--ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE-EKMDALV 268 (802)
T ss_pred HHHHHHHHHH--HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH-HHHHHHH
Confidence 7777666543 111111 01 11 2 45555555543 46667788888888877553 2223333
Q ss_pred HHhcC----------CCcchHHHHHHHHHHhhh-hcCch--HHHHHhhhhcchHHHHHHhhcCCCH--------HHH---
Q 000714 578 ALLTS----------DLPESKVYVLDALKSMLS-VVSFS--DILREGSAANDAVETMIKILSSTKE--------ETQ--- 633 (1335)
Q Consensus 578 ~LL~s----------~~~~~k~~a~~aL~~L~~-~~~~~--~~~~~~i~~~~~i~~Lv~LL~s~~~--------~v~--- 633 (1335)
..+.. ..++. ....+++..++. +.... +.++..+.+.|.+...+++|...-+ +-+
T Consensus 269 ~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 269 EHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 33221 11122 233566666555 22222 3466667778888888888764332 222
Q ss_pred -----HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh
Q 000714 634 -----AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD 668 (1335)
Q Consensus 634 -----~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~ 668 (1335)
..+.+.|..|+.+.+..+.. .....+ +++..|.
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLE 385 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhh
Confidence 34566677777765544433 334444 4444443
No 180
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.91 E-value=4.2 Score=38.69 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=53.1
Q ss_pred hCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 000714 699 ARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1335)
Q Consensus 699 ~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~ 771 (1335)
-...+++++..+.+.+..||..|+.+|.|++.......--.-..+...|.++..+.+..+|.. ++.|-++++
T Consensus 25 l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~-a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSA-AELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHH-HHHHHHHhc
Confidence 345789999999999999999999999999853322111124677888888887777775544 477777764
No 181
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=84.18 E-value=3.6 Score=42.93 Aligned_cols=136 Identities=14% Similarity=0.099 Sum_probs=84.4
Q ss_pred CCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHh-hcccHHHHH
Q 000714 381 RLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQ-GREGIQLLI 459 (1335)
Q Consensus 381 ~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~-~~g~I~~Lv 459 (1335)
..+..+|..+.-++..+. +..+.. ...-+-..+-.++...+.+-...++.++..+-...++....+. ..|..+.++
T Consensus 16 ~~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 334457777777777763 111111 1122233344444444444566677777777655555555555 445678888
Q ss_pred HHhc--CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChH-HHHHHHHHHHH
Q 000714 460 SLLG--LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAK-AKEDSASILRN 521 (1335)
Q Consensus 460 ~lL~--~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~-v~~~Aa~aL~n 521 (1335)
.++. ..+..++..++.+|..-+. ++..|..| ...+++-|-++++.+ ++. +|..|+-+|..
T Consensus 93 ~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 PLASRKSKDRKVQKAALELLSAACI-DKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 8888 7788899999998887774 45544444 456889999999654 455 78888877765
No 182
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=84.12 E-value=14 Score=42.89 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=101.3
Q ss_pred HHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh-HHHH--
Q 000714 578 ALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL-RESS-- 654 (1335)
Q Consensus 578 ~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~-~~~l-- 654 (1335)
+-+++.++.+++.+..|||-.+-+.. + . ....++.+...+..+++.++..|..++..+....+.. -...
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~-~-~------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK-E-L------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh-H-H------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 44567777888888888884433322 1 1 1224777888887789999999999999887653321 1111
Q ss_pred -----HhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHh-CCChHHHHHHhcCCC----HHHHHHHHHH
Q 000714 655 -----IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVA-RDALSPLVVLAGSPV----LEVAEQATCA 724 (1335)
Q Consensus 655 -----~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~----~~vk~~Aa~a 724 (1335)
........+.+.+.+.+++++..++..+..++..+. +.. ..++..|+-+.-++. ...|..=...
T Consensus 106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 112345666777788888999999999999987653 222 344555554443322 2233333334
Q ss_pred HHHHhCCchHHHHHHHCCChHHHHHHhhcCC
Q 000714 725 LANLILDSEVSEKAIAEEIILPATRVLCEGT 755 (1335)
Q Consensus 725 L~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~ 755 (1335)
+-..+.+....+..+....++.+..+.....
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4445566666666666666676666655544
No 183
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=83.68 E-value=54 Score=39.49 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=112.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcccCCH---HHHHHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhh
Q 000714 242 QLLKLLGSGNEASVRAEAAGALKSLSDHCK---DARREIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANIS 318 (1335)
Q Consensus 242 ~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~---e~r~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs 318 (1335)
.+..++...+| +.|-.|.-....+.+..+ .+|+.++++-|.+.+-+++.+.+- ..+..|..++.-++..|..+|
T Consensus 15 ~~~~L~~~k~D-~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~--p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 15 DCLKLLKGKRD-EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSG--PGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred hHHHHhcccCh-HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCC--CCCCcHHHHHHHHHHHHHHHh
Confidence 36667777776 777777777778876433 478889999999999999988652 222335667777788888877
Q ss_pred cCCchhhhhhcccccCCCChhHHHhHhhhhHHHHHhhcccccCCCCCCchhhHHHHHHhhCCCCch------hHHHHHHH
Q 000714 319 GGLSNVISSLGQSLESCSSPAQVADTLGALASALMIYDSKAESTKPSDPLIVEQTLVNQFKPRLPF------LVQERTIE 392 (1335)
Q Consensus 319 ~g~~~~i~~L~~l~~~~~~~~~i~~~~Gal~~ll~~l~~~~~s~~~~~~~~i~~~Lv~LL~~~~~~------~~q~~aa~ 392 (1335)
... .+ ..+ . +.... +++|...+..+.+. .|-+.+-+
T Consensus 92 ~~p-----El---Ash----~---~~v~~-----------------------IP~llev~~~~~d~d~e~~~~m~~d~Y~ 133 (698)
T KOG2611|consen 92 RVP-----EL---ASH----E---EMVSR-----------------------IPLLLEVMSKGIDTDYEDNLIMLEDCYE 133 (698)
T ss_pred CCh-----hh---ccC----H---HHHHh-----------------------hhHHHHHHHhcCCCchhhhHHHHHHHHH
Confidence 521 00 000 0 11122 34444444433322 26677788
Q ss_pred HHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHH-HHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHh-------cC
Q 000714 393 ALASLYGNPLLSIKLENSEAKRLLVGLITMATNEV-QEELVRALLKLCNNEGSLWRALQGREGIQLLISLL-------GL 464 (1335)
Q Consensus 393 aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v-~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL-------~~ 464 (1335)
.|..++..+.....+...|+++.+.++-...+... +.-+...+.-+... -..|. ..++.+..++ ..
T Consensus 134 cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~-~~cw~-----e~~~~flali~~va~df~~ 207 (698)
T KOG2611|consen 134 CLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSK-LDCWS-----ETIERFLALIAAVARDFAV 207 (698)
T ss_pred HHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHh-cccCc-----CCHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999876644333222 22222222222211 12221 2333333333 23
Q ss_pred CCHHHHHHHHHHHHHh
Q 000714 465 SSEQQQECSVALLCLL 480 (1335)
Q Consensus 465 ~~~~v~~~A~~aL~nL 480 (1335)
.+...+.+.+..|..+
T Consensus 208 ~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 208 LHNALKFELCHLLSAV 223 (698)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4556777788877743
No 184
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=83.30 E-value=7.8 Score=51.07 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=111.2
Q ss_pred cHHHHHHHHc----CCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChH
Q 000714 412 AKRLLVGLIT----MATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDD 486 (1335)
Q Consensus 412 ~i~~Lv~lL~----~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~ 486 (1335)
..|.++...+ .++|++|..|.-+|..+++-....+ ....|.|+..|. ++++.++.+++-+++-++-.-|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc-----es~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC-----ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 4556666663 3578999999999999887654433 356899999997 88999999999999988754443
Q ss_pred hHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 000714 487 SKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 487 ~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~ 566 (1335)
.-+. .-+.|..-|.+.++.+|+.|..+|.+|... + +|.-.|.+.-+..++.+++.+++..|-.....|+.
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn-d----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN-D----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh-h----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 2111 345677788999999999999999999874 3 23336889999999999999999988888888877
Q ss_pred cCC
Q 000714 567 KSD 569 (1335)
Q Consensus 567 ~~~ 569 (1335)
.++
T Consensus 1065 k~n 1067 (1251)
T KOG0414|consen 1065 KGN 1067 (1251)
T ss_pred ccc
Confidence 664
No 185
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=83.18 E-value=1.2e+02 Score=39.92 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=104.0
Q ss_pred HHHhcCCHHHHHHhhccC-----ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhc----CCHHHHHHHHHH
Q 000714 490 AITAAGGIPPLVQILESG-----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN----GSANGKEIAAKT 560 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~-----~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~----~~~~~k~~Aa~a 560 (1335)
.+.+.||+..++.++.+- ....-......|..++.. +.+|..+.+.|+++.|+..++. +.....
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~------ 184 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQ------ 184 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCcccccc------
Confidence 345678999999988764 234455567777777775 8999999999999999988753 220000
Q ss_pred HHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcC----CCHHHHHHH
Q 000714 561 LNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSS----TKEETQAKS 636 (1335)
Q Consensus 561 L~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s----~~~~v~~~A 636 (1335)
....+.|+.++..=..+....-...-...+...... -....-+..+.+.+.+ .++.+....
T Consensus 185 ---------~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~------~~~~~~v~~lL~~l~s~~~r~~~~i~~~l 249 (802)
T PF13764_consen 185 ---------AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSE------EQDKEQVEMLLERLNSPFVRSNPQILQAL 249 (802)
T ss_pred ---------chHHHHHHHHHHHHHHHHhhhhhhhccccccccccc------cccHHHHHHHHHHhcCccccCCHHHHHHH
Confidence 111222222211000000000000000000000000 0012235666666654 368899999
Q ss_pred HHHHHHHhcCChhhHHHHHhcCChHHHHHhh--hc-CChhHHHHHHHHHHHHHccChh-----hhHHHHHhCCChHHHHH
Q 000714 637 ASALAGIFETRKDLRESSIAVKTLWSVMKLL--DV-GSECILVEASRCLAAIFLSVRE-----NREVAAVARDALSPLVV 708 (1335)
Q Consensus 637 a~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL--~~-~~~~v~~~aa~aL~~L~~~~~~-----~~~~~i~~~g~i~~Lv~ 708 (1335)
++.|..|+.+.++.-+.+++- ..+.+++= .. .+++. ...+.++..++.+.+. .-|-.+++.|.+...++
T Consensus 250 ~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~ 326 (802)
T PF13764_consen 250 ARILPFLTYGNEEKMDALVEH--FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID 326 (802)
T ss_pred HHHhhHHhcCCHHHHHHHHHH--HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH
Confidence 999999999977655444322 12222211 11 11111 2335566666654433 22334889999998887
Q ss_pred HhcCC
Q 000714 709 LAGSP 713 (1335)
Q Consensus 709 lL~~~ 713 (1335)
.|...
T Consensus 327 YL~~~ 331 (802)
T PF13764_consen 327 YLLKH 331 (802)
T ss_pred HHHHh
Confidence 77543
No 186
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=83.13 E-value=77 Score=41.25 Aligned_cols=205 Identities=18% Similarity=0.134 Sum_probs=126.4
Q ss_pred HHHHhc-cCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccchhh
Q 000714 70 LVSLLR-SGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFS 148 (1335)
Q Consensus 70 Lv~lL~-s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~ 148 (1335)
.+..+. +..+-+|..+.+++...|+-+-... ...+.+..|.++....+.++-..-..+|..++.. |.+ .....
T Consensus 495 ~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~---dpe-f~as~ 568 (1005)
T KOG2274|consen 495 TVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL---DPE-FAASM 568 (1005)
T ss_pred HHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc---Chh-hhhhh
Confidence 334443 4455689999999999883221100 1134566677777777788877778888888872 221 12234
Q ss_pred hcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCC----hhHHHHHHHHHHHHh
Q 000714 149 TEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQ----SSTQAHVCFLLACMM 224 (1335)
Q Consensus 149 ~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~----~~v~~~aa~~L~~La 224 (1335)
++...|..+.+....+ +++.+...+-..+..++...+.+ . -.....||.+++.+..+. ......+...|..+.
T Consensus 569 ~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~~~-g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvv 645 (1005)
T KOG2274|consen 569 ESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAANY-G-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVL 645 (1005)
T ss_pred hcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhh-c-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHH
Confidence 4555666666665554 45566666666666666422111 1 122457899999998876 455666667776666
Q ss_pred hcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHHHCCCh
Q 000714 225 EEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIAGSNGI 283 (1335)
Q Consensus 225 ~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~~~Ggi 283 (1335)
...+.......-.-++|++.+..-+.+|.++...+.++|+.+-+...+.-..--..+|.
T Consensus 646 r~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 646 RNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred hcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 44444445555567888888887666666888899999998886544433333334443
No 187
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.97 E-value=83 Score=39.87 Aligned_cols=208 Identities=16% Similarity=0.097 Sum_probs=124.4
Q ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHH
Q 000714 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 531 (1335)
Q Consensus 452 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~ 531 (1335)
.|.+..+++...+.+..++..++..|+.+.....+ +..-+-.+....+..-+.+..+.+|.+|+.+|..+-.+ +..-
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e-idd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d-~~de- 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE-IDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGD-PKDE- 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc-cCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcC-CCCC-
Confidence 46677777777888999999999999999853222 33333345566777777788899999999999999743 1110
Q ss_pred HHHhcCcHHHHHHHhhc-CCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHH-HHHHhhhhcCchHHHH
Q 000714 532 CVESADAVPALLWLLKN-GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLD-ALKSMLSVVSFSDILR 609 (1335)
Q Consensus 532 ~i~~~g~i~~Lv~LL~~-~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~-aL~~L~~~~~~~~~~~ 609 (1335)
+..++..+..++++ +++++|+.| |.++.. ++.+.+.++.-.++-+..++..+-. ++-.+ ..+
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaa---LsnI~v--dnsTlp~IveRarDV~~anRrlvY~r~lpki--------d~r 224 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAA---LSNISV--DNSTLPCIVERARDVSGANRRLVYERCLPKI--------DLR 224 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHH---HHhhcc--CcccchhHHHHhhhhhHHHHHHHHHHhhhhh--------hhh
Confidence 13456778888877 567788754 445443 4456666665544433333222111 11110 011
Q ss_pred HhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCC-hhHHHHHHHHHHHHHc
Q 000714 610 EGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGS-ECILVEASRCLAAIFL 687 (1335)
Q Consensus 610 ~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~-~~v~~~aa~aL~~L~~ 687 (1335)
.-.. .+-+..+-.=|.+.+..++.++..+|+.=-.. ...|-++.+++-+.-++ .++...+..++....+
T Consensus 225 ~lsi-~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~--------~~dgni~ElL~~ldvsnss~vavk~lealf~~v~ 294 (892)
T KOG2025|consen 225 SLSI-DKRVLLLEWGLNDREFSVKGALVDAILSGWLR--------FSDGNILELLERLDVSNSSEVAVKALEALFSGVR 294 (892)
T ss_pred hhhH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh--------hccccHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 1110 01122222234556777888888877652211 23566777777776554 4778888888777543
No 188
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=81.43 E-value=83 Score=35.44 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=122.8
Q ss_pred CCHHHHHHHHHHHHHhhhccCchhHHHhhc-ccHHHHHH-Hh------cCCC--H---HHHHHHHHHHHHhccCChHhHH
Q 000714 423 ATNEVQEELVRALLKLCNNEGSLWRALQGR-EGIQLLIS-LL------GLSS--E---QQQECSVALLCLLSNENDDSKW 489 (1335)
Q Consensus 423 ~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~-g~I~~Lv~-lL------~~~~--~---~v~~~A~~aL~nLs~~~~~~r~ 489 (1335)
.+++.|+.|...|..--...++..-.+... |.+..|++ +. ..++ . .-..+|...|..++. +++.|.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~ 85 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM 85 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence 467778887766655443333433344444 44555544 22 2221 2 334566677777886 588999
Q ss_pred HHHhcCCHHHHHHhhccC-----ChHHHHHHHHHHHHHhcc-ChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000714 490 AITAAGGIPPLVQILESG-----SAKAKEDSASILRNLCNH-SEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH 563 (1335)
Q Consensus 490 ~i~~~g~I~~Lv~LL~~~-----~~~v~~~Aa~aL~nL~~~-~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~ 563 (1335)
.+.++...--|.-.|+.. -...|-.+.++++.|.+. +++.-..+.+...+|..++.++.|+.-.|-.|.-.+.+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999988754455555443 245788899999999974 45666778889999999999999999999888888888
Q ss_pred hhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHH-hhcCCCHHHHHHHHHHHHH
Q 000714 564 LIHKSDTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIK-ILSSTKEETQAKSASALAG 642 (1335)
Q Consensus 564 L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~-LL~s~~~~v~~~Aa~aL~n 642 (1335)
+..+. . -|..+| ...+-... -..++..++. +....++.+.+...++-..
T Consensus 166 IL~dd-----------------~-------GL~yiC---~t~eRf~a---v~~vL~~mV~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 166 ILLDD-----------------V-------GLNYIC---QTAERFFA---VAMVLNKMVEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HHHSH-----------------H-------HHHHHT---SSHHHHHH---HHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HHcch-----------------h-------HHHHHh---cCHHHHHH---HHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 75422 1 111111 11111110 0223455554 3456788899999999999
Q ss_pred HhcCChhhHHHH
Q 000714 643 IFETRKDLRESS 654 (1335)
Q Consensus 643 L~~~~~~~~~~l 654 (1335)
|+.+ +..+..+
T Consensus 216 Lsdn-prar~aL 226 (262)
T PF04078_consen 216 LSDN-PRAREAL 226 (262)
T ss_dssp HTTS-TTHHHHH
T ss_pred HccC-HHHHHHH
Confidence 9988 6656554
No 189
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=80.86 E-value=8.9 Score=40.01 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHhhcC
Q 000714 18 TLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLR--SGSLAVKIQAATVLGSLCKE 95 (1335)
Q Consensus 18 ~~~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~--s~~~~vk~~aa~~L~~L~~~ 95 (1335)
....+.+.++.+-.. .+.+....++..+..+--..++....+-..+|.++.++.+.. +.+..++..+++.|..-|.+
T Consensus 40 ~~~~~~~~i~~~~~~-~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d 118 (157)
T PF11701_consen 40 FKEKISDFIESLLDE-GEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID 118 (157)
T ss_dssp HHHHHHHHHHHHHCC-HHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcc-ccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc
Confidence 344556666655322 233467777777777765544444444447899999999998 77888899999998888876
Q ss_pred chhHHHHHhcCCcHHHHHhhcCCC-HH-HHHHHHHHHHH
Q 000714 96 NELRVKVLLGGCIPPLLGLLKSSS-AE-GQIAAAKTIYA 132 (1335)
Q Consensus 96 ~~~~~~i~~~g~I~~Lv~lL~s~~-~e-~~~~Aa~aL~~ 132 (1335)
...|..+. ..+++.|-+.++.+. +. +|..|+..|..
T Consensus 119 ~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 119 KSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 66555444 457999999996444 44 68888777764
No 190
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=80.60 E-value=11 Score=40.80 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=59.6
Q ss_pred ccHHHHHHHhcC------CCHHHHHHHHHHHHHhccCChHhHHHHHhc--CC--HHHHHHhhccCChHHHHHHHHHHHHH
Q 000714 453 EGIQLLISLLGL------SSEQQQECSVALLCLLSNENDDSKWAITAA--GG--IPPLVQILESGSAKAKEDSASILRNL 522 (1335)
Q Consensus 453 g~I~~Lv~lL~~------~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~--g~--I~~Lv~LL~~~~~~v~~~Aa~aL~nL 522 (1335)
..+..|++++.. ....-....+.+|.|++. .++.|..+.+. +. +..|+-..++.+..-|.-++.+|.|+
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 357777776654 233556778899999996 69999998754 33 67777777777777788899999999
Q ss_pred hccChhhHHHHHh
Q 000714 523 CNHSEDIRACVES 535 (1335)
Q Consensus 523 ~~~~~~~r~~i~~ 535 (1335)
|-+ .+....+..
T Consensus 131 cFd-~~~H~~LL~ 142 (192)
T PF04063_consen 131 CFD-TDSHEWLLS 142 (192)
T ss_pred hcc-HhHHHHhcC
Confidence 986 555555555
No 191
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=80.54 E-value=10 Score=40.48 Aligned_cols=109 Identities=14% Similarity=0.162 Sum_probs=72.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCch-hHHHhhcccHHHHHHHhcC---------CCHHHHHHHHHHHHHhc
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLLGL---------SSEQQQECSVALLCLLS 481 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~-~~~i~~~g~I~~Lv~lL~~---------~~~~v~~~A~~aL~nLs 481 (1335)
....++..++...... ..+..|...-...+.. .+.+++.||+..|+.+|.. .+...+..++.+|..|.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 4455666665544332 2333333333333222 3456678999999998852 24478888999999999
Q ss_pred cCChHhHHHHH-hcCCHHHHHHhhccCChHHHHHHHHHHHHHh
Q 000714 482 NENDDSKWAIT-AAGGIPPLVQILESGSAKAKEDSASILRNLC 523 (1335)
Q Consensus 482 ~~~~~~r~~i~-~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~ 523 (1335)
+ +..+...+. ..+++..|+..|.+.+..++..++.+|..+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6 466665555 4788999999999999999999999998876
No 192
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.30 E-value=68 Score=40.62 Aligned_cols=108 Identities=21% Similarity=0.145 Sum_probs=70.5
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCcccc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGS 144 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~ 144 (1335)
|.+..+++-..+.+..||..++..|..+..+.......+-.+-...+..-|.+..+-+|.+|+.+|..+-.... |+.
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~-dee-- 161 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPK-DEE-- 161 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCC-CCc--
Confidence 44455555556778889999999999997644333333333445566666677778899999999998875211 111
Q ss_pred chhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCC
Q 000714 145 KIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTST 185 (1335)
Q Consensus 145 ~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~ 185 (1335)
..++-.+..+++..... +++.. +|.|++.++
T Consensus 162 -----~~v~n~l~~liqnDpS~--EVRRa---aLsnI~vdn 192 (892)
T KOG2025|consen 162 -----CPVVNLLKDLIQNDPSD--EVRRA---ALSNISVDN 192 (892)
T ss_pred -----ccHHHHHHHHHhcCCcH--HHHHH---HHHhhccCc
Confidence 34567788888876533 46553 667776544
No 193
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=79.03 E-value=91 Score=37.58 Aligned_cols=100 Identities=14% Similarity=0.197 Sum_probs=78.2
Q ss_pred Hhhccc-HHHHHHHhcCC---CHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhc-cC---ChHHHHHHHHHHH
Q 000714 449 LQGREG-IQLLISLLGLS---SEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILE-SG---SAKAKEDSASILR 520 (1335)
Q Consensus 449 i~~~g~-I~~Lv~lL~~~---~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~-~~---~~~v~~~Aa~aL~ 520 (1335)
+.+.+. ...|..++++. .+.+-..|+.++..+-...|..-..+.++|.++.+++.+. .+ +.++-...-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 444233 45566677654 4578888999999998777888899999999999999888 54 5566666667888
Q ss_pred HHhccChhhHHHHHhcCcHHHHHHHhhcC
Q 000714 521 NLCNHSEDIRACVESADAVPALLWLLKNG 549 (1335)
Q Consensus 521 nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~ 549 (1335)
.||- +..-.+.+.+.+.++.+++++.+.
T Consensus 181 AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 181 AICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred HHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 8887 588888999999999999998773
No 194
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.87 E-value=45 Score=44.54 Aligned_cols=229 Identities=18% Similarity=0.181 Sum_probs=132.6
Q ss_pred ChHHHHHHHHHHHHHhccChhhHHHHHh--cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC-------CcHHHHHH
Q 000714 508 SAKAKEDSASILRNLCNHSEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT-------ATISQLTA 578 (1335)
Q Consensus 508 ~~~v~~~Aa~aL~nL~~~~~~~r~~i~~--~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~-------~~i~~Lv~ 578 (1335)
+..+|..+.++|..++.. +.......+ ......|.+-+++.....+.....+|..+....+. ..|+.++-
T Consensus 667 ~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL 745 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVIL 745 (1176)
T ss_pred cHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 788999999999999885 444333322 22345555666666666677777777776554431 23333443
Q ss_pred HhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC--CHHHHHHHH--HHHHHHhcCChhhHHHH
Q 000714 579 LLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST--KEETQAKSA--SALAGIFETRKDLRESS 654 (1335)
Q Consensus 579 LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~--~~~v~~~Aa--~aL~nL~~~~~~~~~~l 654 (1335)
.+...+...+..+-.+|-.++++...-+...+. ....+...+..+..+ .+..+..+. .++..+.....+.-...
T Consensus 746 ~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~ 823 (1176)
T KOG1248|consen 746 SLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDE 823 (1176)
T ss_pred hcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 445566677888888888776422111110000 122566666666654 444443333 44444443322211111
Q ss_pred HhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhC--Cc
Q 000714 655 IAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL--DS 732 (1335)
Q Consensus 655 ~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~--~~ 732 (1335)
.-.+.+..+.-.|.++++++...|...+..++...++..- ....+..++.+..+.++....++...-..|-.|+. ..
T Consensus 824 ~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l-~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~ 902 (1176)
T KOG1248|consen 824 TLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECL-SPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHH-hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence 1223344444555788888888888888888877765443 34445577888888888888887777777766663 33
Q ss_pred hHHHHHHH
Q 000714 733 EVSEKAIA 740 (1335)
Q Consensus 733 ~~~~~~~~ 740 (1335)
+..+.+..
T Consensus 903 ~eLe~~~p 910 (1176)
T KOG1248|consen 903 EELESFLP 910 (1176)
T ss_pred HHHHhhCH
Confidence 44444433
No 195
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=78.11 E-value=24 Score=39.61 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=97.3
Q ss_pred HHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCC-----HHHHHHHHHHHHHhhhccC-chhHHHhhcccHHHHHHHhc
Q 000714 390 TIEALASLYGNPLLSIKLENSEAKRLLVGLITMAT-----NEVQEELVRALLKLCNNEG-SLWRALQGREGIQLLISLLG 463 (1335)
Q Consensus 390 aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~A~~aL~~Ls~~~~-~~~~~i~~~g~I~~Lv~lL~ 463 (1335)
+..-+-.++++|+.|..+.+....-.|..+|+..+ +..|-...+.+..|...++ +....+.+.+.+|..++.++
T Consensus 70 aLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me 149 (262)
T PF04078_consen 70 ALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME 149 (262)
T ss_dssp HHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence 33334456889999999999888888888876543 3567778888888876543 34456677889999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCChHhHHHHHh--------cCCHHHHHH-hhccCChHHHHHHHHHHHHHhccChhhHHHHH
Q 000714 464 LSSEQQQECSVALLCLLSNENDDSKWAITA--------AGGIPPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVE 534 (1335)
Q Consensus 464 ~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~--------~g~I~~Lv~-LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~ 534 (1335)
.+++-.+..|...+..+-.+ +.+-..+.. ..++..+|. +.+.+++.+-.+..++...|+.+ +..|+.+.
T Consensus 150 ~GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~aL~ 227 (262)
T PF04078_consen 150 FGSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREALR 227 (262)
T ss_dssp HS-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHHHH
Confidence 99999999999888877643 433222211 113333443 44566889999999999999984 88887775
Q ss_pred h
Q 000714 535 S 535 (1335)
Q Consensus 535 ~ 535 (1335)
+
T Consensus 228 ~ 228 (262)
T PF04078_consen 228 Q 228 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 196
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=76.56 E-value=39 Score=41.35 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=110.8
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCH----HHHHHHHHHHHHhccCChH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSE----QQQECSVALLCLLSNENDD 486 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~----~v~~~A~~aL~nLs~~~~~ 486 (1335)
.....+.+.+.+++...+..+...|..++.+..- .+.++...|+..|.+++.++.. ++...++.++..+-.+.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~f-a~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLDPTF-AEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH-HHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 3456688888899998888899999999877643 4556678999999999987644 555556666665543211
Q ss_pred hHHHHHhcCCHHHHHHhhc--cCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 000714 487 SKWAITAAGGIPPLVQILE--SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1335)
Q Consensus 487 ~r~~i~~~g~I~~Lv~LL~--~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L 564 (1335)
..+......+|.....+.+ ..+..+-..|...|.++...++..+..+.+.--+..|+..++.++......|...+-.+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2222223333444444432 22556778899999999888777889999999999999999999988888766666666
Q ss_pred hccC
Q 000714 565 IHKS 568 (1335)
Q Consensus 565 ~~~~ 568 (1335)
....
T Consensus 241 ~~~a 244 (713)
T KOG2999|consen 241 FRKA 244 (713)
T ss_pred HhhC
Confidence 5544
No 197
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=76.18 E-value=3.3e+02 Score=37.93 Aligned_cols=141 Identities=17% Similarity=0.190 Sum_probs=87.5
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchh--HHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCc
Q 000714 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENEL--RVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 141 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~--~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~ 141 (1335)
.+.+..++..|.+....+|..|.+.|..++.-+.. ..+.++.+ +-.-+.+.+..+|++|+..++..-.. .
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~---~- 886 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLS---I- 886 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhc---c-
Confidence 45677888888988889999999999999754331 12222222 33344556788899998888765541 1
Q ss_pred cccchhhhcCChHHHHHHhhcC-CCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhc---cCChhHHHHHH
Q 000714 142 VGSKIFSTEGVVPVLWEQLKNG-LKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLT---LGQSSTQAHVC 217 (1335)
Q Consensus 142 ~~~~~l~~~G~Ip~Lv~LL~~~-~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~---s~~~~v~~~aa 217 (1335)
...++..-+.+..+ .+++..|+..+.+.++.+|...++.-. + ++..+++++ +....++.-+.
T Consensus 887 --------~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i-----~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 887 --------PELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-I-----VDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred --------HHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-H-----HHHHHHHHHHhccchhHHHHHHH
Confidence 22344444444433 344556888889999999977665522 2 223334443 33334777777
Q ss_pred HHHHHHhhc
Q 000714 218 FLLACMMEE 226 (1335)
Q Consensus 218 ~~L~~La~~ 226 (1335)
.++.++...
T Consensus 953 etf~klWF~ 961 (1692)
T KOG1020|consen 953 ETFLKLWFT 961 (1692)
T ss_pred HHHHHHhcc
Confidence 777776643
No 198
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.71 E-value=1.7e+02 Score=38.04 Aligned_cols=160 Identities=13% Similarity=0.157 Sum_probs=98.6
Q ss_pred HHHHHhcCCHHHHHHhhccC--------ChHHHHHHHHHHHHHhccChhhHHHHHhcC--------cHHHHHHHhh----
Q 000714 488 KWAITAAGGIPPLVQILESG--------SAKAKEDSASILRNLCNHSEDIRACVESAD--------AVPALLWLLK---- 547 (1335)
Q Consensus 488 r~~i~~~g~I~~Lv~LL~~~--------~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g--------~i~~Lv~LL~---- 547 (1335)
...+.+.+++..++++...+ ..+....|..+|.-+... |+.+..+..+- ++..+++...
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 45566778888888877654 134556777777777664 77776664321 3333333222
Q ss_pred cCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcC-CCcch------H-HHHHHHHHHhhhhcCchHHHHHhhhhcchHH
Q 000714 548 NGSANGKEIAAKTLNHLIHKSDTATISQLTALLTS-DLPES------K-VYVLDALKSMLSVVSFSDILREGSAANDAVE 619 (1335)
Q Consensus 548 ~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s-~~~~~------k-~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~ 619 (1335)
-.+|+.++.|..++-|+.+.+.......+...-.+ +++.. + ......+.. ..+.+..++||.
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~----------mw~~Vr~ndGIk 742 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQ----------MWEAVRGNDGIK 742 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHH----------HHHHHhcCccHH
Confidence 13688999999999999887643333333333221 22211 0 011122221 234466788999
Q ss_pred HHHHhhcCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhcCC
Q 000714 620 TMIKILSST-----KEETQAKSASALAGIFETRKDLRESSIAVKT 659 (1335)
Q Consensus 620 ~Lv~LL~s~-----~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~ 659 (1335)
.|++||+-. .+.+|.-|+.+|..|+++ +..+..+.+.-.
T Consensus 743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~-~tVrQIltKLpL 786 (1516)
T KOG1832|consen 743 ILLKLLQYKNPPTTADCIRALACRVLLGLARD-DTVRQILTKLPL 786 (1516)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHHhccccC-cHHHHHHHhCcc
Confidence 999999754 357899999999999998 777777755543
No 199
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=75.30 E-value=48 Score=42.38 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=86.7
Q ss_pred CcHHHHHHHhccC----CHHHHHHHHHHHHHhh----cCchhHHHHHhcCCcHHHHHhhc----CCCHHHHHHHHHHHHH
Q 000714 65 QAVPVLVSLLRSG----SLAVKIQAATVLGSLC----KENELRVKVLLGGCIPPLLGLLK----SSSAEGQIAAAKTIYA 132 (1335)
Q Consensus 65 g~v~~Lv~lL~s~----~~~vk~~aa~~L~~L~----~~~~~~~~i~~~g~I~~Lv~lL~----s~~~e~~~~Aa~aL~~ 132 (1335)
..+..+..++++. .+.++..|.-.++.+. .+.+.+...+....++.+.+.|. ..+.+.+...+++|+|
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 3456666777643 3334555555555543 33322212222335666666554 3444556677888888
Q ss_pred hhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC--Ch
Q 000714 133 VSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG--QS 210 (1335)
Q Consensus 133 Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~--~~ 210 (1335)
+.. . ..++.|...+.........++..+..+|+.++...+. ..-+.+..+..+. ++
T Consensus 473 ~g~----~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~--------~v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 473 AGH----P----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR--------KVQEVLLPIYLNRAEPP 530 (574)
T ss_pred cCC----h----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch--------HHHHHHHHHHcCCCCCh
Confidence 777 2 3456666666633334445777889999988643322 2234566666654 45
Q ss_pred hHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHH
Q 000714 211 STQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASV 255 (1335)
Q Consensus 211 ~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~v 255 (1335)
++|..|...| +..++ ....+..+...+....+..+
T Consensus 531 EvRiaA~~~l---m~t~P-------~~~~l~~ia~~l~~E~~~QV 565 (574)
T smart00638 531 EVRMAAVLVL---METKP-------SVALLQRIAELLNKEPNLQV 565 (574)
T ss_pred HHHHHHHHHH---HhcCC-------CHHHHHHHHHHHhhcCcHHH
Confidence 6666665554 23323 13445666777766544333
No 200
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=75.05 E-value=44 Score=43.16 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=84.8
Q ss_pred HHHHHHHhcc----CCHHHHHHHHHHHHHhh----cCc------hhHHHHHhcCCcHHHHHhhc----CCCHHHHHHHHH
Q 000714 67 VPVLVSLLRS----GSLAVKIQAATVLGSLC----KEN------ELRVKVLLGGCIPPLLGLLK----SSSAEGQIAAAK 128 (1335)
Q Consensus 67 v~~Lv~lL~s----~~~~vk~~aa~~L~~L~----~~~------~~~~~i~~~g~I~~Lv~lL~----s~~~e~~~~Aa~ 128 (1335)
+..+..++++ .++.++..|.-.++.+. ..+ +.+........++.|...|. .++.+.+..+++
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 3445555553 34456666666666654 221 11111222345666666665 455677788999
Q ss_pred HHHHhhccCCCCccccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC
Q 000714 129 TIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG 208 (1335)
Q Consensus 129 aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~ 208 (1335)
+|+|+.. ...++.|...+.........++..|..||+.+....+.. ..+.+..++.+.
T Consensus 513 aLgN~g~--------------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~ 570 (618)
T PF01347_consen 513 ALGNLGH--------------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNT 570 (618)
T ss_dssp HHHHHT---------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-T
T ss_pred HhhccCC--------------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCC
Confidence 9999987 245788888888775455567778888888776443322 234567777664
Q ss_pred --ChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHH
Q 000714 209 --QSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVR 256 (1335)
Q Consensus 209 --~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr 256 (1335)
+.++|..|...| ...++ ....+..+...+....+..+.
T Consensus 571 ~e~~EvRiaA~~~l---m~~~P-------~~~~l~~i~~~l~~E~~~QV~ 610 (618)
T PF01347_consen 571 TEDPEVRIAAYLIL---MRCNP-------SPSVLQRIAQSLWNEPSNQVA 610 (618)
T ss_dssp TS-HHHHHHHHHHH---HHT----------HHHHHHHHHHHTT-S-HHHH
T ss_pred CCChhHHHHHHHHH---HhcCC-------CHHHHHHHHHHHhhCchHHHH
Confidence 445666555444 23323 134556777777665443333
No 201
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=74.93 E-value=46 Score=35.41 Aligned_cols=110 Identities=16% Similarity=0.145 Sum_probs=71.5
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHH-HHhccCChHhHHHHHhcCCHHHHHHhhccC---------ChHHHHHHHHHHHHH
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALL-CLLSNENDDSKWAITAAGGIPPLVQILESG---------SAKAKEDSASILRNL 522 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL-~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~---------~~~v~~~Aa~aL~nL 522 (1335)
.....+++.+++..... ..+.-| ..|-.........+.+.||+..|+++|..- +...+..++.+|..|
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 44566777776654332 112222 222223344567788899999999988642 346778899999998
Q ss_pred hccChhhHHHHH-hcCcHHHHHHHhhcCCHHHHHHHHHHHHHhh
Q 000714 523 CNHSEDIRACVE-SADAVPALLWLLKNGSANGKEIAAKTLNHLI 565 (1335)
Q Consensus 523 ~~~~~~~r~~i~-~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~ 565 (1335)
... ......+. ..+++..|+..+.+.+..+|..+...|..++
T Consensus 144 ~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred Hcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 875 45455444 5889999999999999999998888887664
No 202
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=74.47 E-value=1.7e+02 Score=33.78 Aligned_cols=197 Identities=14% Similarity=0.133 Sum_probs=133.2
Q ss_pred HHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHH-----hcCCHHHHHHhhccCChHHHHHHHHHHHHH
Q 000714 448 ALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAIT-----AAGGIPPLVQILESGSAKAKEDSASILRNL 522 (1335)
Q Consensus 448 ~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~-----~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL 522 (1335)
.+.++|....|+..+...+-+.+..+.....|+-...-..|...+ ....+..|+.--.. .+++-..+-..|...
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLREC 152 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHH
Confidence 355678888899888777777777787777777543222222111 11234444443111 356666666677777
Q ss_pred hccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCC----------c--HHHHHHHhcCCCcchHHH
Q 000714 523 CNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTA----------T--ISQLTALLTSDLPESKVY 590 (1335)
Q Consensus 523 ~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~----------~--i~~Lv~LL~s~~~~~k~~ 590 (1335)
.++ +...+.+....-.......++.++-++-..|..+...+...+... . .+.--.|+++++--++..
T Consensus 153 irh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred Hhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 776 677777777777777777777777776666777777665544221 1 222567888999999999
Q ss_pred HHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 591 VLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 591 a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
+...++.+.-..+.......-+.....+..++.+|++.+..+|-.|-.+..-...+
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99999998765555444444455566799999999999999999998887766655
No 203
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.04 E-value=25 Score=42.85 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=71.5
Q ss_pred ccHHHHHHH-hcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhH
Q 000714 453 EGIQLLISL-LGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIR 530 (1335)
Q Consensus 453 g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r 530 (1335)
|.|..|++. .++.+++++++|+.+|.-++..++. .++..|++|... ++.+|...+.+|+-.|...- .
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G-~- 619 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTG-D- 619 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc-c-
Confidence 556667766 5677899999999999988865444 566677777654 67888888888877665421 1
Q ss_pred HHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 531 ACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 531 ~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
.-++..|-.++.+.++-+|+.|.-++.-+.....
T Consensus 620 -----~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n 653 (926)
T COG5116 620 -----KVATDILEALMYDTNDFVRQSAMIAVGMILMQCN 653 (926)
T ss_pred -----HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC
Confidence 1245666677778788888888888776655543
No 204
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=73.89 E-value=2.7e+02 Score=36.45 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=107.7
Q ss_pred HHHHhhhccCchhHHHhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHH--HHHHhhccCCh-
Q 000714 434 ALLKLCNNEGSLWRALQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIP--PLVQILESGSA- 509 (1335)
Q Consensus 434 aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~--~Lv~LL~~~~~- 509 (1335)
+|++.+......++.+.+.+|+..+...++. .+.+.+..+.+.+.|++.. .+.+.......-+. .+-.++..-+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 8899999999999999999999999999984 5678999999999999853 43333332211222 22234444443
Q ss_pred HHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHH
Q 000714 510 KAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKV 589 (1335)
Q Consensus 510 ~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~ 589 (1335)
+.-..++.+|..+..++++ ....+.-+..-+ .+......- ...
T Consensus 573 ersY~~~siLa~ll~~~~~----~~~~~~r~~~~~---------------~l~e~i~~~--------------~~~---- 615 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK----TTECVFRNSVNE---------------LLVEAISRW--------------LTS---- 615 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc----CccccchHHHHH---------------HHHHHhhcc--------------Ccc----
Confidence 6777888888888776432 000111111111 111110000 000
Q ss_pred HHHHHHHHhhhhcCchHHHHHhhhhcchHHH-HHHhhc-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhh
Q 000714 590 YVLDALKSMLSVVSFSDILREGSAANDAVET-MIKILS-STKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLL 667 (1335)
Q Consensus 590 ~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~-Lv~LL~-s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL 667 (1335)
..+ ......+.+ +.+++. +..+..+-.|.+++.++...+++++..+.+.|+++.+...-
T Consensus 616 -------------~~~------~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 616 -------------EIR------VINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred -------------cee------ehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 000 000111223 444443 35677788999999999999899888888888887776655
Q ss_pred hc
Q 000714 668 DV 669 (1335)
Q Consensus 668 ~~ 669 (1335)
..
T Consensus 677 ~~ 678 (699)
T KOG3665|consen 677 VL 678 (699)
T ss_pred hh
Confidence 33
No 205
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.55 E-value=3.1e+02 Score=36.39 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=157.7
Q ss_pred cccHHHHHH-HHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHH----HhccCC
Q 000714 410 SEAKRLLVG-LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLC----LLSNEN 484 (1335)
Q Consensus 410 ~g~i~~Lv~-lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~----nLs~~~ 484 (1335)
-++++.|-. +|+..+.+.+...+..+..+-..++++.+...+.-.+|.++.-+..--..+|..-+..|- -+. +.
T Consensus 465 LeAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtvvn-cv 543 (2799)
T KOG1788|consen 465 LEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTVVN-CV 543 (2799)
T ss_pred hHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhhhc-cC
Confidence 345555544 346677777777777777776666555555555667888888776544444433333221 111 22
Q ss_pred hHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 000714 485 DDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNH 563 (1335)
Q Consensus 485 ~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~ 563 (1335)
|+ ++. -.|.-+|+.+ +...+.........|...+..+++.+.+-|.++.|...++.+.
T Consensus 544 Pe-qEL-------lSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhk------------- 602 (2799)
T KOG1788|consen 544 PE-QEL-------LSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHK------------- 602 (2799)
T ss_pred cH-HHH-------HHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhh-------------
Confidence 22 221 2355566665 4555555566666666667889999999999999988887631
Q ss_pred hhccCCC--CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHH--------HH
Q 000714 564 LIHKSDT--ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEE--------TQ 633 (1335)
Q Consensus 564 L~~~~~~--~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~--------v~ 633 (1335)
|...+|+ +.-+. .+.++.. ...+.......++-.--+++++++-+ .-
T Consensus 603 ll~gpdqysgvseh-----ydrnpss------------------~sf~~~ld~~daiisspklmeSgsgklplfevllti 659 (2799)
T KOG1788|consen 603 LLRGPDQYSGVSEH-----YDRNPSS------------------PSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTI 659 (2799)
T ss_pred hccCcchhhhHHHH-----hhcCCCC------------------chhhhccccccceeecchhhcccCCccchhhhhhhh
Confidence 1111110 00000 0000000 00000000001111111122222110 11
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCC
Q 000714 634 AKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSP 713 (1335)
Q Consensus 634 ~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~ 713 (1335)
...-.+|..|-.++.+|++.+.++.++..++.++- +++-+....+.+.++...++.. +++.-+..|+..|+++
T Consensus 660 tvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRSslLrivscLitvdpkq-----vhhqelmalVdtLksg 732 (2799)
T KOG1788|consen 660 TVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVDPKQ-----VHHQELMALVDTLKSG 732 (2799)
T ss_pred hchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccCccc-----ccHHHHHHHHHHHHhc
Confidence 22345777788888999999999998888877772 3333444555666666665531 1223345566666652
Q ss_pred --------CHHH----HHHHHHHHHHHhC-CchHHHHHHHCCChHHHHHHhhc
Q 000714 714 --------VLEV----AEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCE 753 (1335)
Q Consensus 714 --------~~~v----k~~Aa~aL~nL~~-~~~~~~~~~~~g~v~~L~~ll~~ 753 (1335)
+.++ +..-..+||.+.. +-+....+-++++...|...+..
T Consensus 733 mvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLht 785 (2799)
T KOG1788|consen 733 MVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHT 785 (2799)
T ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHH
Confidence 1222 2344457777763 55666777788888888877653
No 206
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=73.34 E-value=60 Score=40.80 Aligned_cols=132 Identities=15% Similarity=0.102 Sum_probs=95.2
Q ss_pred CCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHH
Q 000714 423 ATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLV 501 (1335)
Q Consensus 423 ~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv 501 (1335)
+++..+..|.-+|..+.+-..+.+ ..-.|.|+..++ +++|.++.+|+-.|+.+.-.-...... .-.-|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc-----~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFC-----SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHH
Confidence 678899999888888765544433 366899999887 889999999998887765321111111 123455
Q ss_pred HhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCC
Q 000714 502 QILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 502 ~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
+-|.+.+..+|..|..++.+|.... . +.-.|-.+.+..+|.+.+.+....|-..+..++...+
T Consensus 978 rrL~De~~~V~rtclmti~fLilag-q----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN 1040 (1128)
T COG5098 978 RRLGDEDADVRRTCLMTIHFLILAG-Q----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN 1040 (1128)
T ss_pred HHhcchhhHHHHHHHHHHHHHHHcc-c----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc
Confidence 5666778899999999999887632 1 1125677888999999999999988888888877543
No 207
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=71.40 E-value=18 Score=32.46 Aligned_cols=66 Identities=8% Similarity=0.081 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccC-ChHHHHHHHHHHHHHhccChhhHHHHHhcC
Q 000714 470 QECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESG-SAKAKEDSASILRNLCNHSEDIRACVESAD 537 (1335)
Q Consensus 470 ~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~-~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g 537 (1335)
.+.|.++++++++ ++..-..+.+.+.++.++++.++. ...+|--|..+|+-++. +.+-.+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4678999999995 577778788889999999998865 56889999999999988 477777666654
No 208
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.30 E-value=1.4e+02 Score=38.56 Aligned_cols=167 Identities=19% Similarity=0.145 Sum_probs=92.2
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcC----CCHHHHHHHHHHHHHhcc---
Q 000714 410 SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGL----SSEQQQECSVALLCLLSN--- 482 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~nLs~--- 482 (1335)
..++..+.+++....-. -..+...|..+........ ...+..+..++++ .++.++..|+-+++.+..
T Consensus 394 ~~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt-----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPT-----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHHTT-S--HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 34566777777664322 2335555655544331212 2345566666654 345677777777766642
Q ss_pred CCh------HhHHHHHhcCCHHHHHHhhc----cCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcC---
Q 000714 483 END------DSKWAITAAGGIPPLVQILE----SGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--- 549 (1335)
Q Consensus 483 ~~~------~~r~~i~~~g~I~~Lv~LL~----~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~--- 549 (1335)
... ...........++.+...|. .++.+.+..++.+|+|+... ..++.|..++...
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhcccc
Confidence 110 00011122235666666665 34567788899999999752 3677777777776
Q ss_pred CHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCc--chHHHHHH
Q 000714 550 SANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLP--ESKVYVLD 593 (1335)
Q Consensus 550 ~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~--~~k~~a~~ 593 (1335)
+...|..|.++|.++.......+.+.|..++.+..+ +++..|..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~ 582 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYL 582 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHH
Confidence 566788888999888655544666778888776444 44444433
No 209
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=68.20 E-value=73 Score=41.97 Aligned_cols=184 Identities=17% Similarity=0.145 Sum_probs=116.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhh----cCCCHHHHHHHHHHHHHhhccCCCCcc
Q 000714 67 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLL----KSSSAEGQIAAAKTIYAVSQGGAKDYV 142 (1335)
Q Consensus 67 v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL----~s~~~e~~~~Aa~aL~~Ls~~~~~d~~ 142 (1335)
.+.|...+-+.++.-|.+++..+....+++. .....++...+..++ ++.+..+...|+..|..++.+ -.
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~---~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~----lr 327 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK---KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK----LR 327 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc---cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh----cc
Confidence 3566666778888899999999999886655 223334443333333 355666677888888888872 11
Q ss_pred ccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHHHH
Q 000714 143 GSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLLAC 222 (1335)
Q Consensus 143 ~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L~~ 222 (1335)
....=+..++.|.+++-+..... .+.+.+..++...+.... -....+.+..+++++++..+..+...+.+
T Consensus 328 ~~~~~~~~~v~p~lld~lkekk~---~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 328 PLFRKYAKNVFPSLLDRLKEKKS---ELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred hhhHHHHHhhcchHHHHhhhccH---HHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 11222456778888888776432 244545555554442111 12446678889999999999988877766
Q ss_pred HhhcCc-chhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhccc
Q 000714 223 MMEEDV-SVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSD 268 (1335)
Q Consensus 223 La~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~ 268 (1335)
.....+ .....-.-.++++.++.+..+.+. ++|..|..++..+-.
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~-~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDTDK-DVRKAALEAVAAVMK 443 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCCcH-HHHHHHHHHHHHHHH
Confidence 553322 222222235667777777777655 899999999887664
No 210
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=67.75 E-value=56 Score=35.56 Aligned_cols=144 Identities=14% Similarity=0.177 Sum_probs=95.7
Q ss_pred HHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCC-----CHHHHHHHHHHHHHhhhccCch-hHHHhhcccHHHHHHHh
Q 000714 389 RTIEALASLYGNPLLSIKLENSEAKRLLVGLITMA-----TNEVQEELVRALLKLCNNEGSL-WRALQGREGIQLLISLL 462 (1335)
Q Consensus 389 ~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~~Ls~~~~~~-~~~i~~~g~I~~Lv~lL 462 (1335)
.+...|..++++|+.+..+.+....-.+...|... .+..|..+.+.+..|..+++.. ...+...+.||..++++
T Consensus 119 naL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm 198 (315)
T COG5209 119 NALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM 198 (315)
T ss_pred HHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence 34444555688999998888876655555555432 2356778888888888776543 34556678899999999
Q ss_pred cCCCHHHHHHHHHHHHHhccCChHh----HHHHHhcCCHHH----HH-HhhccCChHHHHHHHHHHHHHhccChhhHHHH
Q 000714 463 GLSSEQQQECSVALLCLLSNENDDS----KWAITAAGGIPP----LV-QILESGSAKAKEDSASILRNLCNHSEDIRACV 533 (1335)
Q Consensus 463 ~~~~~~v~~~A~~aL~nLs~~~~~~----r~~i~~~g~I~~----Lv-~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i 533 (1335)
+.+++--+.-|..++..+-.+ +.+ ++.+-+--+|.. ++ ++...++-+....+.++-..|+. +++.|..+
T Consensus 199 e~gSElSktvaifI~qkil~d-DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~aR~lL 276 (315)
T COG5209 199 ELGSELSKTVAIFIFQKILGD-DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPHARALL 276 (315)
T ss_pred HhhhHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHhHHHHH
Confidence 999998888888888777633 332 333333223322 22 23445566777788888888886 47777655
Q ss_pred H
Q 000714 534 E 534 (1335)
Q Consensus 534 ~ 534 (1335)
.
T Consensus 277 ~ 277 (315)
T COG5209 277 S 277 (315)
T ss_pred h
Confidence 3
No 211
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.25 E-value=41 Score=44.83 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=104.0
Q ss_pred CHHHHHHhhccC----ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCCC
Q 000714 496 GIPPLVQILESG----SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDT 570 (1335)
Q Consensus 496 ~I~~Lv~LL~~~----~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~-~~~~~~k~~Aa~aL~~L~~~~~~ 570 (1335)
..|.++.+.+++ +|++|..|.-+|+.+..-+.+..+. -.|.|+..+. +++|.+|.++.-+|+.|+..-+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 467777777654 7899999999999998876655533 4788888887 67888999999999988765332
Q ss_pred ---CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 571 ---ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 571 ---~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
..-+.|-.-|++.++.++..+.-++..|.- ...+.-.|-++.+..++.++++.++.-|=.-.-.|+..
T Consensus 995 lie~~T~~Ly~rL~D~~~~vRkta~lvlshLIL--------ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 995 LIEPWTEHLYRRLRDESPSVRKTALLVLSHLIL--------NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHH--------hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 334557777899999999999988887631 22234467789999999999999988777666666544
No 212
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=67.00 E-value=2.2e+02 Score=31.87 Aligned_cols=135 Identities=21% Similarity=0.218 Sum_probs=80.6
Q ss_pred HHHHH-hhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCC--CcHH
Q 000714 498 PPLVQ-ILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDT--ATIS 574 (1335)
Q Consensus 498 ~~Lv~-LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~--~~i~ 574 (1335)
+.|.. +-+..+++.+.....+|..++.++..+... .++.|..+...+....+..+.+.+..+....+. +.+.
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~ 77 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQ 77 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHH
Confidence 44444 444558899999999999999873133333 345666666776666666667777777665542 2233
Q ss_pred HHHHH--hc-----CCCc---chHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhh-cCCCHHHHHHHHHHHHHH
Q 000714 575 QLTAL--LT-----SDLP---ESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKIL-SSTKEETQAKSASALAGI 643 (1335)
Q Consensus 575 ~Lv~L--L~-----s~~~---~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL-~s~~~~v~~~Aa~aL~nL 643 (1335)
.++.. ++ .+.. +.....+.++..++..... .+ ...++.+..+| .+.++..+..+..+|..+
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g---~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HG---VDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hH---HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 33332 11 1111 1222223344444433222 11 23578888889 788999999999999999
Q ss_pred hc
Q 000714 644 FE 645 (1335)
Q Consensus 644 ~~ 645 (1335)
|.
T Consensus 150 c~ 151 (234)
T PF12530_consen 150 CE 151 (234)
T ss_pred HH
Confidence 93
No 213
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.92 E-value=31 Score=42.12 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=81.5
Q ss_pred cCcHHHHHHH-hhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHh-cCCCcchHHHHHHHHHHhhhhcCchHHHHHhhh
Q 000714 536 ADAVPALLWL-LKNGSANGKEIAAKTLNHLIHKSDTATISQLTALL-TSDLPESKVYVLDALKSMLSVVSFSDILREGSA 613 (1335)
Q Consensus 536 ~g~i~~Lv~L-L~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL-~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~ 613 (1335)
.|++..|+.. ..++++++|+.|..+|.-.+.. |...+...+.+| .+.++.++...+-+|+-.|+ +..
T Consensus 550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~-D~~~lv~tvelLs~shN~hVR~g~AvaLGiaca----------g~G 618 (926)
T COG5116 550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCD-DRDLLVGTVELLSESHNFHVRAGVAVALGIACA----------GTG 618 (926)
T ss_pred chhHhhhheeecccCchHHHHHHHHheeeeEec-CcchhhHHHHHhhhccchhhhhhhHHHhhhhhc----------CCc
Confidence 4566777776 6678899999999999877764 444555555554 56788899888888884332 222
Q ss_pred hcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhcCChHHHHHhhhcCChh
Q 000714 614 ANDAVETMIKILSSTKEETQAKSASALAGIFET-RKDLRESSIAVKTLWSVMKLLDVGSEC 673 (1335)
Q Consensus 614 ~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~-~~~~~~~l~~~g~v~~Lv~LL~~~~~~ 673 (1335)
..-++..|-.++.+.++-+|+.|..+++-+... +++.... -.+++..+.+++.+..++
T Consensus 619 ~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~--v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 619 DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN--VKRIIKKFNRVIVDKHES 677 (926)
T ss_pred cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh--HHHHHHHHHHHHhhhhHh
Confidence 234577777888888999999999998877533 2321111 123455555555554443
No 214
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=66.84 E-value=1.9e+02 Score=36.66 Aligned_cols=135 Identities=16% Similarity=0.122 Sum_probs=76.6
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhc--CChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhH
Q 000714 617 AVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAV--KTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1335)
Q Consensus 617 ~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~--g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 694 (1335)
.+..++..+. .++..+.-++++|+|++.+ +..++.+... -...++.+.-...+..++...+..+++....- .+.
T Consensus 590 ~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l--~~~ 665 (745)
T KOG0301|consen 590 LVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLL--IQD 665 (745)
T ss_pred HHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH--Hhc
Confidence 4555666555 6678888999999999988 6666555332 22233333333344445554444444433211 111
Q ss_pred HHHHhCCChHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChh
Q 000714 695 VAAVARDALSPLVVLAGS-----PVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTIS 757 (1335)
Q Consensus 695 ~~i~~~g~i~~Lv~lL~~-----~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~ 757 (1335)
-.+.+..+.|...+.. .+.+...+...||.+|++.+....++...--+.-+.+.+++....
T Consensus 666 --~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~ 731 (745)
T KOG0301|consen 666 --NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSN 731 (745)
T ss_pred --ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHhccC
Confidence 1123455555544432 223344677779999999888888876666666666665554443
No 215
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.82 E-value=4e+02 Score=34.85 Aligned_cols=569 Identities=17% Similarity=0.167 Sum_probs=283.1
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCC--cchHHHHHHHHHHhhh-hcCc-hHH-HHHhhhhcchH-HHHH
Q 000714 549 GSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDL--PESKVYVLDALKSMLS-VVSF-SDI-LREGSAANDAV-ETMI 622 (1335)
Q Consensus 549 ~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~--~~~k~~a~~aL~~L~~-~~~~-~~~-~~~~i~~~~~i-~~Lv 622 (1335)
++|.+++.+-++|..+-.. ++-.-.++.++.++. +.++..++-.+.+-.. -+.. .+. .+-.-.+...+ ..++
T Consensus 17 pdps~rk~aEr~L~~~e~q--~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv 94 (960)
T KOG1992|consen 17 PDPSVRKPAERALRSLEGQ--QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIV 94 (960)
T ss_pred CCCccCchHHHHHHHhccC--CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHH
Confidence 3466666677777666443 233445566666554 3344444444444322 1100 000 00000011123 4556
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCC-hhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChh-------hhH
Q 000714 623 KILSSTKEETQAKSASALAGIFETR-KDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRE-------NRE 694 (1335)
Q Consensus 623 ~LL~s~~~~v~~~Aa~aL~nL~~~~-~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~-------~~~ 694 (1335)
.++-+....+|..-..+|.-++... ++.=. -.++-|+.-+++++-...........+++.--.. -..
T Consensus 95 ~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~E 169 (960)
T KOG1992|consen 95 TLMLSSPFNIQKQLSEALSLIGKRDFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLE 169 (960)
T ss_pred HHHhcCcHHHHHHHHHHHHHHhccccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHH
Confidence 7777888899999999999888541 11111 1355566666666555444444444445432111 011
Q ss_pred HHHHhCCChHHHHHHhcCCCHHHH--H---HHHHHHHH-------Hh--CCchHHHHHHHC---CChHHHHHHhhcCCh-
Q 000714 695 VAAVARDALSPLVVLAGSPVLEVA--E---QATCALAN-------LI--LDSEVSEKAIAE---EIILPATRVLCEGTI- 756 (1335)
Q Consensus 695 ~~i~~~g~i~~Lv~lL~~~~~~vk--~---~Aa~aL~n-------L~--~~~~~~~~~~~~---g~v~~L~~ll~~~~~- 756 (1335)
....-...-.++..+++......+ . .+...|.. +- .+....-++.++ ..++...+++....+
T Consensus 170 IK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~ 249 (960)
T KOG1992|consen 170 IKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPL 249 (960)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcc
Confidence 112222344566666654333332 1 11111111 21 122222222222 234455555542111
Q ss_pred -----------hhHHHHHHHHHHHhhcCCCchhHHHHHHhhc--cHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCCCCC
Q 000714 757 -----------SGKTLAAAAIARLLHSRKIDYTITDCVNRAG--TVLALVSFLESASGSVATSEALDALAILSRSGGASG 823 (1335)
Q Consensus 757 -----------~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g--~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~~~~ 823 (1335)
...+..+.-+++|-. .+.++++...+.+-- ....|+...+++.....-..|+..|...++.+.-
T Consensus 250 le~~~ee~~~l~~lka~ICEi~~LY~-~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y-- 326 (960)
T KOG1992|consen 250 LESDEEEATVLDKLKAQICEIFNLYA-TKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHY-- 326 (960)
T ss_pred cccCcccccHHHHHHHHHHHHHHHHH-HhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhh--
Confidence 112333444455443 233444433333332 2333344444443222225556666555553322
Q ss_pred CCCCcchhhhcccccchhhhhhhhcCChhhHHHHHHHHHHhccCCCCccchhhhcccccHHHHHHHhhcCCCchhhhhhH
Q 000714 824 HVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIEILSRLCRDQPAVLGDEVTGASGCISSIARRVISCTNPKVKIGGA 903 (1335)
Q Consensus 824 ~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~iL~~l~~~~~~~~g~~i~~~g~~~~~~~~~~l~s~~~~~k~~a~ 903 (1335)
.-+-+-.+.+..|.+.++.+|-.+...-.|+ +.|++.. -..|-|+-+|..+|..+|
T Consensus 327 ------~~~F~~~~vl~~i~e~VvlpN~~lR~eDeEl----FED~ple--------------YiRRDlEGsDvdTRRR~a 382 (960)
T KOG1992|consen 327 ------AELFEGENVLAQICEKVVLPNLILREEDEEL----FEDNPLE--------------YIRRDLEGSDVDTRRRAA 382 (960)
T ss_pred ------HhhhcchHHHHHHHHhhcccccccchhhHHH----hccCHHH--------------HHHHhcccCCcchhHHHH
Confidence 2222334566677777777775555444432 2332221 134778888999888877
Q ss_pred HHHHHhhccccchhhcccccccchhHHHHHHHhhhhcccCCccccCCCc---hhhhHHhhcCCchhhccCCccccC---c
Q 000714 904 ALLICAAKVNHQRIVEDLNHSNSCAPLIQSLVTMLSVVEASPLRNQGND---DKEAISIYRYTSEEARNGGESESS---T 977 (1335)
Q Consensus 904 ~~~i~~~k~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~ 977 (1335)
.-++---+.+ . + .|.+.-.-...=.++.+-.+.| +++- |+-.+-.... ...|.+++.| +
T Consensus 383 ~dlvrgL~~~----f-e---~~vt~v~~~~v~~~l~~y~~nP---S~nWk~kd~aiyL~tal----aik~~t~~~Gvtst 447 (960)
T KOG1992|consen 383 IDLVRGLCKN----F-E---GQVTGVFSSEVQRLLDQYSKNP---SGNWKKKDRAIYLVTAL----AIKGQTAKHGVTST 447 (960)
T ss_pred HHHHHHHHHH----h-c---chhHHHHHHHHHHHHHHhccCC---CccccccchhhhhhHHH----Hhhcchhhcceeec
Confidence 7666543331 1 1 2333333233333333322222 1111 1111111111 1123444444 2
Q ss_pred chhc--hhhHHHHHHHHHhcCCCccchhHhhcchhHHhHHHhhccccccccccccccchhHHHHHHHHHHhcchhhhhhh
Q 000714 978 AVIF--GENLAIWLLCVLACHDEKCKIVIMEAGAMDVLTDRISDSLSQFTQMDYKEDSSIWICALLLAILFQDRDIIRAH 1055 (1335)
Q Consensus 978 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 1055 (1335)
--++ -...+...+.-|-+ -+.|.--|+.++++ ||+.-|- ...-.+
T Consensus 448 n~lvdv~~Ff~~~ilp~L~s-~~vn~~pilka~aI----Ky~~~FR----------------------------~ql~~~ 494 (960)
T KOG1992|consen 448 NELVDVVDFFANQILPDLLS-PNVNEFPILKADAI----KYIYTFR----------------------------NQLGKE 494 (960)
T ss_pred cccccHHHHHHHHhhHHhcc-Cccccccchhhccc----ceeeeec----------------------------ccCChH
Confidence 2233 24555566666633 23377789999999 8877551 123345
Q ss_pred hhhchHHHHHHHhcccchhhhHHHHHHHHHh--hhcCCCCcchhhcccCcccchhhhhcccccchhhhhhhhHHhhhccC
Q 000714 1056 ATMKAIPILANLLKSEESANRYFAAQAVASL--VCNGSRGTLLSVANSGAAGGLISLLGCADADVQDLLDLSEEFALVRY 1133 (1335)
Q Consensus 1056 ~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1335)
-.|-.+|.|+..|.++++.=--|||-++=-+ +|..|++.+.+ ++-.+..+..+ +.+|. +-|++...
T Consensus 495 ~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~---~~~iap~~~~l------l~nLf---~a~s~p~~ 562 (960)
T KOG1992|consen 495 HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFG---AEDIAPFVEIL------LTNLF---KALSLPGK 562 (960)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccc---hhhcchHHHHH------HHHHH---HhccCCcc
Confidence 6788899999999999999999999997654 44444444221 22222222222 33433 33444332
Q ss_pred ---CcHH-HHHhhhccccccchhhhhhhhhhHHhhcC---CCCCCCCc---hhHHHHHHHHhhhcCCCcceeeeecChHH
Q 000714 1134 ---PDQV-ALERLFRVEDIRVGATSRKAIPALVDLLK---PIPDRPGA---PFLALGFLIQLAKDCPSNKIVMVEAGALE 1203 (1335)
Q Consensus 1134 ---~~~~-~l~~~f~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~---~~~a~~~l~~~~~~~~~~~~~~~e~~~~~ 1203 (1335)
+.-. ...|.|.+.+.-.-..+-..++-|-+++. -+|-+|+. -+..++++++.+..+.+..+.-.|..+++
T Consensus 563 ~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p 642 (960)
T KOG1992|consen 563 AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFP 642 (960)
T ss_pred cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH
Confidence 2222 34444555444332335556666666654 35566665 25689999999999988888889999999
Q ss_pred HHHHHhhC
Q 000714 1204 ALTKYLSL 1211 (1335)
Q Consensus 1204 ~l~~~ls~ 1211 (1335)
.+..+|+-
T Consensus 643 ~fq~Il~e 650 (960)
T KOG1992|consen 643 VFQTILSE 650 (960)
T ss_pred HHHHHHHH
Confidence 99999987
No 216
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=66.42 E-value=22 Score=46.01 Aligned_cols=147 Identities=17% Similarity=0.162 Sum_probs=100.1
Q ss_pred hHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcc-cccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHH
Q 000714 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLEN-SEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRA 448 (1335)
Q Consensus 370 i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~ 448 (1335)
+.++|+...+ ..+...+..-..+|.++..+--....+-+ ....|.|++.|...+..+|-.+..++.-+....+.....
T Consensus 868 ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~ 946 (1030)
T KOG1967|consen 868 IVPILVSKFE-TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE 946 (1030)
T ss_pred hHHHHHHHhc-cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH
Confidence 5677777777 33334667777888887554322222222 456788899999999999999999998876655443221
Q ss_pred HhhcccHHHHHHHhcCCC---HHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHH
Q 000714 449 LQGREGIQLLISLLGLSS---EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASI 518 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~~~---~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~a 518 (1335)
-. .--+|.++.+=++.+ ..+++.|..+|..|+..-|..+-.-.+-.++.+|...|.++..-+|+.|+.+
T Consensus 947 ~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 947 HL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 11 133676776655554 5789999999999987455544444445577888888988877788888765
No 217
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=64.00 E-value=1.2e+02 Score=40.06 Aligned_cols=187 Identities=12% Similarity=0.126 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHH-HcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc
Q 000714 385 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGL-ITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG 463 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~ 463 (1335)
..|..+++.+.....++.........+-+..++.. +.+.+..+...++.+|..++........... .+..|.+++-++
T Consensus 268 K~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~v~p~lld~lk 346 (815)
T KOG1820|consen 268 KDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KNVFPSLLDRLK 346 (815)
T ss_pred HHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-HhhcchHHHHhh
Confidence 35667777777666555411111112223333332 3456777888888888888776554433332 366788999998
Q ss_pred CCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccCh---hhHHHHHhcCcHH
Q 000714 464 LSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE---DIRACVESADAVP 540 (1335)
Q Consensus 464 ~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~---~~r~~i~~~g~i~ 540 (1335)
.-...+++....++-.++...+. ...++.+...++++++..+..+...+.......+ ..+..+ .+.++
T Consensus 347 ekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~l~p 417 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV--KTLVP 417 (815)
T ss_pred hccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH--HHHhH
Confidence 88888888887777666532221 2356778889999999999988777766655433 223333 45778
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhc
Q 000714 541 ALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLT 581 (1335)
Q Consensus 541 ~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~ 581 (1335)
.++....+.+..+|..|..++..+......+++..++..+.
T Consensus 418 ~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~ 458 (815)
T KOG1820|consen 418 HLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLD 458 (815)
T ss_pred HHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 88888888899999999888887766555555555544443
No 218
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=63.75 E-value=87 Score=31.62 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=56.9
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcCch--hHHHHHhcCCcHHHHHhhcC---CCHHHHHHHHHHHHHhhc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LRVKVLLGGCIPPLLGLLKS---SSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~--~~~~i~~~g~I~~Lv~lL~s---~~~e~~~~Aa~aL~~Ls~ 135 (1335)
.++..|-..|+++++.++..|..+|-.+.++-. .+..+.....+..|+.++.. .+++++..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356788889999999999999999999987653 45566665677778888875 467888899988888877
No 219
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=63.50 E-value=1e+02 Score=35.08 Aligned_cols=155 Identities=19% Similarity=0.124 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhCCcchhhhhcccc--cHHHHHHHHcC----CCHHHHHHHHHHHHHhhhccCchhHHHhhc-c-cHHH
Q 000714 386 VQERTIEALASLYGNPLLSIKLENSE--AKRLLVGLITM----ATNEVQEELVRALLKLCNNEGSLWRALQGR-E-GIQL 457 (1335)
Q Consensus 386 ~q~~aa~aL~~L~~~~~~~~~i~~~g--~i~~Lv~lL~~----~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~-g-~I~~ 457 (1335)
.+-.+.-.+.-+..++.....+...+ ....+..++.. ..+..+..++++++|+-.+.... ..+.+. + .+..
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILE 157 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHH
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHH
Confidence 34555555655566665555554432 23444444433 46678889999999987765443 334333 3 3444
Q ss_pred HHHHhcCC----CHHHHHHHHHHHHHhccCChHhHH-HHHhcCCHHHHHHhhcc--CChHHHHHHHHHHHHHhccChhhH
Q 000714 458 LISLLGLS----SEQQQECSVALLCLLSNENDDSKW-AITAAGGIPPLVQILES--GSAKAKEDSASILRNLCNHSEDIR 530 (1335)
Q Consensus 458 Lv~lL~~~----~~~v~~~A~~aL~nLs~~~~~~r~-~i~~~g~I~~Lv~LL~~--~~~~v~~~Aa~aL~nL~~~~~~~r 530 (1335)
.+..+... +..++..++.++.|++......+. .=.....+..+++.+.. .+++...+++.+|++|...++..+
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~ 237 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAK 237 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHH
Confidence 44444443 678999999999999742111110 00011124455553332 489999999999999997654444
Q ss_pred HHHHhcCcHHH
Q 000714 531 ACVESADAVPA 541 (1335)
Q Consensus 531 ~~i~~~g~i~~ 541 (1335)
......|+-..
T Consensus 238 ~~~~~l~~~~~ 248 (268)
T PF08324_consen 238 QLAKSLDVKSV 248 (268)
T ss_dssp HHCCCCTHHHH
T ss_pred HHHHHcChHHH
Confidence 44333343333
No 220
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=62.36 E-value=59 Score=33.35 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=74.0
Q ss_pred HHHHHHHHHHccCCCchhHHHHHHHHHHHhcCCh-HHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcC--ch
Q 000714 21 SVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKE--NE 97 (1335)
Q Consensus 21 ~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~-~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~--~~ 97 (1335)
.+.++|+...+..- .++--.....+.++.+.++ +. ..++..|-..|+++++.++..|...|-.+.++ ..
T Consensus 4 ~~~~~I~kATs~~l-~~~dw~~ileicD~In~~~~~~-------k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~ 75 (142)
T cd03569 4 EFDELIEKATSELL-GEPDLASILEICDMIRSKDVQP-------KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH 75 (142)
T ss_pred hHHHHHHHHcCccc-CccCHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH
Confidence 46677777754322 2222233333444433222 22 24678889999999999999999999999876 34
Q ss_pred hHHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 000714 98 LRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 98 ~~~~i~~~g~I~~Lv~lL~-s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
.+..+...+.+..|+.++. ..+++++..++..+.+.+.
T Consensus 76 fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 76 FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 5677777788889999887 4667888888888888876
No 221
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.61 E-value=2.9e+02 Score=34.48 Aligned_cols=114 Identities=21% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCCCchhHHHHHHHHHHH-Hcc-CCCchhHHHHHHHHHHHhcCChHHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHH
Q 000714 12 MEDPDGTLASVAQCIEQL-RQS-SSSVQEKEYSLRQLLELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVL 89 (1335)
Q Consensus 12 ~~~~~~~~~~v~~~i~~l-~~~-~~s~~ek~~Al~~L~~Ls~~~~~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L 89 (1335)
++||++ ..-|++.+.-+ +.. +.+..-|..+++.|..+++--.+..+.+. +|.+..|.+.+=+..+.+|.+|+.+|
T Consensus 80 ~~dpeg-~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DRE~~VR~eAv~~L 156 (885)
T COG5218 80 PDDPEG-EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDREKAVRREAVKVL 156 (885)
T ss_pred CCChhh-hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 678887 56677777766 322 22333466788888888775445555554 67888888888888899999999999
Q ss_pred HHhhcCchhHHHHHhcCCcHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 000714 90 GSLCKENELRVKVLLGGCIPPLLGLLK-SSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 90 ~~L~~~~~~~~~i~~~g~I~~Lv~lL~-s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
..+-....+-+. ..+..|+.+++ +++.|+|.. +|.|++.
T Consensus 157 ~~~Qe~~~neen----~~~n~l~~~vqnDPS~EVRr~---allni~v 196 (885)
T COG5218 157 CYYQEMELNEEN----RIVNLLKDIVQNDPSDEVRRL---ALLNISV 196 (885)
T ss_pred HHHHhccCChHH----HHHHHHHHHHhcCcHHHHHHH---HHHHeee
Confidence 988633222111 11235566665 456778765 4788888
No 222
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=60.90 E-value=34 Score=44.35 Aligned_cols=152 Identities=16% Similarity=0.074 Sum_probs=103.1
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHh--cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCc
Q 000714 64 SQAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLL--GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDY 141 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~--~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~ 141 (1335)
.+.+|.|++...+.+-..|-.=...|.+.-.+-+. ..+.. ..-.|.|++.|+-+|.++|..+...+.-+-. .+
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~----~~ 940 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT----ES 940 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH----hc
Confidence 56789999998876667888888888887654443 22222 2456788889998999998887777665554 22
Q ss_pred cccchhhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHHH
Q 000714 142 VGSKIFSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFLL 220 (1335)
Q Consensus 142 ~~~~~l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~L 220 (1335)
..-..-.-.-.+|.++.+=++++.....++..+..+|..|....+...-...+..++..|.+.|.++..-+|..|..+=
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1111111233478888777766544456888889999999864554444455667788899999888777887777653
No 223
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.11 E-value=1.3e+02 Score=39.23 Aligned_cols=174 Identities=12% Similarity=0.117 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHH-hc
Q 000714 385 LVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISL-LG 463 (1335)
Q Consensus 385 ~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~l-L~ 463 (1335)
.+|-++..-|..+..+.+-+..+...+.+......|++.++.+--+|+..+..||.-.++ ..+|-|.+. .+
T Consensus 742 pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~il~dL~e~Y~s 813 (982)
T KOG4653|consen 742 PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------DILPDLSEEYLS 813 (982)
T ss_pred cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------hhHHHHHHHHHh
Confidence 468888888888887666666777788899999999999999999999988888875432 446666663 32
Q ss_pred CCC---HHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccCh-hhHHHHHhcCcH
Q 000714 464 LSS---EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSE-DIRACVESADAV 539 (1335)
Q Consensus 464 ~~~---~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~-~~r~~i~~~g~i 539 (1335)
..+ .+.+-..-.++.++...-.+....-.+ -.+..+....++++...|..++..+++|+.... .....+.+ .+
T Consensus 814 ~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e--v~ 890 (982)
T KOG4653|consen 814 EKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE--VL 890 (982)
T ss_pred cccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH--HH
Confidence 211 122222224444443211111111111 234556666676677778889999999987421 11122222 34
Q ss_pred HHHHHHhhc-CCHHHHHHHHHHHHHhhccCC
Q 000714 540 PALLWLLKN-GSANGKEIAAKTLNHLIHKSD 569 (1335)
Q Consensus 540 ~~Lv~LL~~-~~~~~k~~Aa~aL~~L~~~~~ 569 (1335)
..++.+.+. +++-+|+.|+..+..+.....
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 444555444 567789999999888876543
No 224
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.23 E-value=99 Score=31.58 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=57.6
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcCc--hhHHHHHhcCCcHHHHHhhcC------CCHHHHHHHHHHHHHhhc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN--ELRVKVLLGGCIPPLLGLLKS------SSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~--~~~~~i~~~g~I~~Lv~lL~s------~~~e~~~~Aa~aL~~Ls~ 135 (1335)
.++..+...|+++++.++..|...|-.+.++- ..+..+...+.+..|++++.. .+.+++...+..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998654 456777878888899999953 457888888888877766
No 225
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=57.52 E-value=4.1e+02 Score=31.91 Aligned_cols=136 Identities=17% Similarity=0.110 Sum_probs=84.3
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcC----------CCHHHHHHHHHHHHHhhhc
Q 000714 372 QTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITM----------ATNEVQEELVRALLKLCNN 441 (1335)
Q Consensus 372 ~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~v~~~A~~aL~~Ls~~ 441 (1335)
..+...+..+.+...|....+.+.-|.++...-..+....-++.|..+-+- .+..+...+..||+|+..+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 344555555554445666677777777766555555555555555554321 2336788999999999988
Q ss_pred cCchhHHHhhcccHHHHHHHhcC-----CCHHHHHHHHHHHHHhccCChHhHH-HHHhcCCHHHHHHhhccC
Q 000714 442 EGSLWRALQGREGIQLLISLLGL-----SSEQQQECSVALLCLLSNENDDSKW-AITAAGGIPPLVQILESG 507 (1335)
Q Consensus 442 ~~~~~~~i~~~g~I~~Lv~lL~~-----~~~~v~~~A~~aL~nLs~~~~~~r~-~i~~~g~I~~Lv~LL~~~ 507 (1335)
....+....+......+.+.+.. .-..++..=...|.-++.-..+.|. .+.+.+|++-+-++|.+.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 87766655555555555554432 1224555555666666544456664 456789999999988754
No 226
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=56.37 E-value=27 Score=32.94 Aligned_cols=84 Identities=17% Similarity=0.212 Sum_probs=60.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhccCCCCccccch
Q 000714 67 VPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKI 146 (1335)
Q Consensus 67 v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~ 146 (1335)
+...+..|++..+.+|.++...|.++....+ ....-....+..+...|+++++-+--.|.+.|..++. -+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~----~~----- 74 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD----RH----- 74 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH----HC-----
Confidence 4455677788888999999999999987666 2222224567778888999988888899999999988 22
Q ss_pred hhhcCChHHHHHHhhc
Q 000714 147 FSTEGVVPVLWEQLKN 162 (1335)
Q Consensus 147 l~~~G~Ip~Lv~LL~~ 162 (1335)
...++|.|++.-.+
T Consensus 75 --p~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 75 --PDEVLPILLDEYAD 88 (92)
T ss_pred --hHHHHHHHHHHHhC
Confidence 13456666665443
No 227
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=55.09 E-value=4.5e+02 Score=31.70 Aligned_cols=125 Identities=13% Similarity=0.135 Sum_probs=92.3
Q ss_pred cccHHHHHHHHcCC---CHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhc-C---CCHHHHHHHHHHHHHhcc
Q 000714 410 SEAKRLLVGLITMA---TNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLG-L---SSEQQQECSVALLCLLSN 482 (1335)
Q Consensus 410 ~g~i~~Lv~lL~~~---~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~-~---~~~~v~~~A~~aL~nLs~ 482 (1335)
...+..|...+++. .+.+-..|+..+..+-.+.+..-..+.++|.++.+++.+. . ++.++...--.+|..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 33445555555554 3467788888888888888887788889999999999887 3 366777777788999996
Q ss_pred CChHhHHHHHhcCCHHHHHHhhccCCh-------HHHHHHHHHHHHHhccChhhHHHHHh
Q 000714 483 ENDDSKWAITAAGGIPPLVQILESGSA-------KAKEDSASILRNLCNHSEDIRACVES 535 (1335)
Q Consensus 483 ~~~~~r~~i~~~g~I~~Lv~LL~~~~~-------~v~~~Aa~aL~nL~~~~~~~r~~i~~ 535 (1335)
+....+.+.+.+.++.+++++.+.+- +.-...-..+-.|.+|-+..|..+.+
T Consensus 185 -N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 185 -NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred -CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 68889999999999999999987621 11222234566678887888877655
No 228
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.96 E-value=2.5e+02 Score=35.94 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=84.4
Q ss_pred ccHHHHHHHHcCC----CHHHHHHHHHHHHHhhh----ccCchhHHHhhcccHHHHHHHhcC----CCHHHHHHHHHHHH
Q 000714 411 EAKRLLVGLITMA----TNEVQEELVRALLKLCN----NEGSLWRALQGREGIQLLISLLGL----SSEQQQECSVALLC 478 (1335)
Q Consensus 411 g~i~~Lv~lL~~~----~~~v~~~A~~aL~~Ls~----~~~~~~~~i~~~g~I~~Lv~lL~~----~~~~v~~~A~~aL~ 478 (1335)
..+..+..++++. .+.++..+.-++..+.. ..+.....+. ...++.+.+.|.. .+.+.+...+.+|+
T Consensus 393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG 471 (574)
T smart00638 393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALG 471 (574)
T ss_pred HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence 3555666666543 44566666666655532 2221112222 2456666666642 34555677788899
Q ss_pred HhccCChHhHHHHHhcCCHHHHHHhhc-c--CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcC--CHHH
Q 000714 479 LLSNENDDSKWAITAAGGIPPLVQILE-S--GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNG--SANG 553 (1335)
Q Consensus 479 nLs~~~~~~r~~i~~~g~I~~Lv~LL~-~--~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~--~~~~ 553 (1335)
|+.. +. .++.+..++. + .+..+|..|+++|.+++...+ .-+.+.|..++.+. ++++
T Consensus 472 N~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~Ev 532 (574)
T smart00638 472 NAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEV 532 (574)
T ss_pred ccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHH
Confidence 9883 44 4555666565 2 256899999999999875433 22345566666664 4455
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHhcC
Q 000714 554 KEIAAKTLNHLIHKSDTATISQLTALLTS 582 (1335)
Q Consensus 554 k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s 582 (1335)
|-.|...|.. ..++...+..+...+..
T Consensus 533 RiaA~~~lm~--t~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 533 RMAAVLVLME--TKPSVALLQRIAELLNK 559 (574)
T ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHhh
Confidence 5544444433 33444555555555543
No 229
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=54.17 E-value=2.1e+02 Score=30.70 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=69.8
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC----C---------------hHHHHHhhhc-CChhHHHHHH
Q 000714 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK----T---------------LWSVMKLLDV-GSECILVEAS 679 (1335)
Q Consensus 620 ~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g----~---------------v~~Lv~LL~~-~~~~v~~~aa 679 (1335)
.+.-++.+.++++|..|+.+|..|-.+.+..-....+.+ . -..|+..+.. .+.....+..
T Consensus 44 Llt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~l 123 (182)
T PF13251_consen 44 LLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLL 123 (182)
T ss_pred hhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334456788999999999999999887544322222111 1 1223333433 4666778888
Q ss_pred HHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 000714 680 RCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILD 731 (1335)
Q Consensus 680 ~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~ 731 (1335)
.++..+....|.++-..-.-...+..+..++.+.+++++..+..++..+...
T Consensus 124 K~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 124 KCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 8888888766643221111122334444677788889998888888887653
No 230
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=53.12 E-value=5.5e+02 Score=33.73 Aligned_cols=94 Identities=19% Similarity=0.067 Sum_probs=63.0
Q ss_pred HHHHHhcCChhhHHHHHhcCChHHHHHhhhc-CChhHHHHHHHHHHHHHccChh-hhHHHHHhCCChHHHHHHhcCCCH-
Q 000714 639 ALAGIFETRKDLRESSIAVKTLWSVMKLLDV-GSECILVEASRCLAAIFLSVRE-NREVAAVARDALSPLVVLAGSPVL- 715 (1335)
Q Consensus 639 aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~-~~~~v~~~aa~aL~~L~~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~- 715 (1335)
+|+++....+++++.+.+.|++..+...+.. ...+.+.....-+.+++...+. .... ..+.--...+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~-~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLM-IFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHhhcchh
Confidence 8999999999999999999999999999975 4455666677777777644322 1111 1111111344445555555
Q ss_pred HHHHHHHHHHHHHhCCch
Q 000714 716 EVAEQATCALANLILDSE 733 (1335)
Q Consensus 716 ~vk~~Aa~aL~nL~~~~~ 733 (1335)
+....++..|+.+..+.+
T Consensus 573 ersY~~~siLa~ll~~~~ 590 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSE 590 (699)
T ss_pred hHHHHHHHHHHHHHhCCC
Confidence 777888888888876543
No 231
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=52.13 E-value=33 Score=37.92 Aligned_cols=84 Identities=21% Similarity=0.146 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhCCcchhhhhcccc-------cHHHHHHHHcC-CCHHHHHHHHHHHHHhhhccCchhHHHh-hccc
Q 000714 384 FLVQERTIEALASLYGNPLLSIKLENSE-------AKRLLVGLITM-ATNEVQEELVRALLKLCNNEGSLWRALQ-GREG 454 (1335)
Q Consensus 384 ~~~q~~aa~aL~~L~~~~~~~~~i~~~g-------~i~~Lv~lL~~-~~~~v~~~A~~aL~~Ls~~~~~~~~~i~-~~g~ 454 (1335)
-.-|..+.++|++++-.+.+...+...+ .+..|++++.. .++..|+.|+-.|.+|+..+....+.+. +.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3468999999999988877766665543 34456676654 5667889999999999998877766554 4577
Q ss_pred HHHHHHHhcCCCH
Q 000714 455 IQLLISLLGLSSE 467 (1335)
Q Consensus 455 I~~Lv~lL~~~~~ 467 (1335)
|..|+.+++....
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976543
No 232
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=51.98 E-value=37 Score=37.60 Aligned_cols=84 Identities=21% Similarity=0.263 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhccCChHhHHHHHhcCC-------HHHHHHhhcc-CChHHHHHHHHHHHHHhccChhhH-HHHHhcCc
Q 000714 468 QQQECSVALLCLLSNENDDSKWAITAAGG-------IPPLVQILES-GSAKAKEDSASILRNLCNHSEDIR-ACVESADA 538 (1335)
Q Consensus 468 ~v~~~A~~aL~nLs~~~~~~r~~i~~~g~-------I~~Lv~LL~~-~~~~v~~~Aa~aL~nL~~~~~~~r-~~i~~~g~ 538 (1335)
.-|+.|+.+|+.|+- .+.|...+...+- +..|++++.. +++-.||-|+..|.+|+..+.... ..-.+.++
T Consensus 139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 458899999999985 4666666655554 3445555554 478899999999999999765544 45557889
Q ss_pred HHHHHHHhhcCCHH
Q 000714 539 VPALLWLLKNGSAN 552 (1335)
Q Consensus 539 i~~Lv~LL~~~~~~ 552 (1335)
|..|+..+.+....
T Consensus 218 i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 218 ISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999875443
No 233
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=50.81 E-value=1.3e+02 Score=30.83 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=59.7
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcCch--hHHHHHhcCCcHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENE--LRVKVLLGGCIPPLLGLLKS-SSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~--~~~~i~~~g~I~~Lv~lL~s-~~~e~~~~Aa~aL~~Ls~ 135 (1335)
.++..|...|+++++.++..|...|-.++++-. .+..+.....+..|++++.. .+++++...+..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 456788889999999999999999999986644 56677777888999999987 778899998888888876
No 234
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=50.70 E-value=2.7e+02 Score=34.82 Aligned_cols=104 Identities=15% Similarity=0.141 Sum_probs=69.3
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhcc--CChHhH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSN--ENDDSK 488 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~--~~~~~r 488 (1335)
+.+..+++-+.+.+-.+|...+..|+.++..-.+....+. .|-+..|.+-+-+..+.++..|+.+|+.+-. .+++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 4556667777788889999999999988766554433333 4666777776667788999999999988742 334432
Q ss_pred HHHHhcCCHHHHHHhhcc-CChHHHHHHHHHHHHHhcc
Q 000714 489 WAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCNH 525 (1335)
Q Consensus 489 ~~i~~~g~I~~Lv~LL~~-~~~~v~~~Aa~aL~nL~~~ 525 (1335)
. ...|+.++++ ++.++|.. ++.|+..+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~---allni~vd 197 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRL---ALLNISVD 197 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHH---HHHHeeeC
Confidence 1 2345566654 46777764 45566553
No 235
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=50.07 E-value=70 Score=28.80 Aligned_cols=68 Identities=9% Similarity=-0.082 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCC
Q 000714 633 QAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDA 702 (1335)
Q Consensus 633 ~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~ 702 (1335)
.+.+.+++++++.. +.-...+.+.+.++.++++....+.-..+-.+...+.+.....+-.+ .+.+.|+
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~-~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAE-ILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHH-HHHHcCC
Confidence 46899999999987 55555556678999999999887777778888888888877665555 3555554
No 236
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=49.45 E-value=1.5e+02 Score=31.26 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=68.1
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhccc--HHHHHHHhcCC-CHHHHHHHHHHHHHhcc---CCh
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREG--IQLLISLLGLS-SEQQQECSVALLCLLSN---END 485 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~--I~~Lv~lL~~~-~~~v~~~A~~aL~nLs~---~~~ 485 (1335)
.+..+..+|++.+++.|..++..+...+..++ ++.+.+.++ +..|+.+|+.+ ...+.+.++.+|..|.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34557788888888888888777777766542 344544444 68899999865 45678888888877642 334
Q ss_pred HhHHHHHhc---CCHHHHHHhhccCChHHHHHHHHHHHHHhcc
Q 000714 486 DSKWAITAA---GGIPPLVQILESGSAKAKEDSASILRNLCNH 525 (1335)
Q Consensus 486 ~~r~~i~~~---g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~ 525 (1335)
+..+.+... +.++.++++++. ....+.+..+|..+...
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 433333221 234555555543 45556666666666553
No 237
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.64 E-value=8.2e+02 Score=32.80 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=76.2
Q ss_pred hcCChHHHHHHhhcC------CCChhhHHHHHHHHHHHhhc---CChhhHHHHHhcCCHHHHHHHhccCChhHHHHHHHH
Q 000714 149 TEGVVPVLWEQLKNG------LKSGNVVDNLLTGALRNLST---STEGFWAATVQAGGIDILVKLLTLGQSSTQAHVCFL 219 (1335)
Q Consensus 149 ~~G~Ip~Lv~LL~~~------~~~~~~v~~~a~~aL~nLs~---~~~~~~~~i~~~g~I~~Lv~lL~s~~~~v~~~aa~~ 219 (1335)
-.|.++.+++.+.+. ++... -..-+..++.+|+. .+..+ ....+.=.+..+...++++-.-.|.+||+.
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~r-qkdGAL~~vgsl~~~L~K~s~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~v 485 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPR-QKDGALRMVGSLASILLKKSPY-KSQMEYFLVNHVFPEFQSPYGYLRARACWV 485 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChh-hhhhHHHHHHHHHHHHccCCch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHH
Confidence 356678888888833 22222 11223444444442 22222 223333344556666777878899999999
Q ss_pred HHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHHHHHH
Q 000714 220 LACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDARREIA 278 (1335)
Q Consensus 220 L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~i~ 278 (1335)
++..+.- +......-..++..-.+.|.++++..++..|+-+|..+-++++.....+.
T Consensus 486 l~~~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~ 542 (1010)
T KOG1991|consen 486 LSQFSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS 542 (1010)
T ss_pred HHHHHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence 9887633 22222333556677777777566668999999999998876655544443
No 238
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=47.76 E-value=5.3e+02 Score=30.38 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=109.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhh-ccCchhHHHhhcc--cHHHHHHHhcCC-----C--------HHHHHHHHHH
Q 000714 413 KRLLVGLITMATNEVQEELVRALLKLCN-NEGSLWRALQGRE--GIQLLISLLGLS-----S--------EQQQECSVAL 476 (1335)
Q Consensus 413 i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~-~~~~~~~~i~~~g--~I~~Lv~lL~~~-----~--------~~v~~~A~~a 476 (1335)
++.+.+.|....+.+...+.+.|..+.. ......+.+.+.= ..+.+.+++... . +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999988 5545555554332 245566666321 1 2777777755
Q ss_pred H-HHhccCChHhHHHH-HhcCCHHHHHHhhccCChHHHHHHHHHHHH-Hhcc---ChhhHHHHHhcCcHHHHHHHhhcCC
Q 000714 477 L-CLLSNENDDSKWAI-TAAGGIPPLVQILESGSAKAKEDSASILRN-LCNH---SEDIRACVESADAVPALLWLLKNGS 550 (1335)
Q Consensus 477 L-~nLs~~~~~~r~~i-~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~n-L~~~---~~~~r~~i~~~g~i~~Lv~LL~~~~ 550 (1335)
+ ..+...++..+..+ .+.+.+..+.+-|...++++......+|.. +..+ ....|-.+.....+..|..+.....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 4 45555556665554 456678889999988888888888888875 4332 2345556666778888988888777
Q ss_pred H----HHHHHHHHHHHHhhccCCCC
Q 000714 551 A----NGKEIAAKTLNHLIHKSDTA 571 (1335)
Q Consensus 551 ~----~~k~~Aa~aL~~L~~~~~~~ 571 (1335)
+ .+.+.+-..|..++.++..|
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCCcc
Confidence 6 66777777787777666444
No 239
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=46.18 E-value=1.2e+02 Score=30.57 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=56.0
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcC--chhHHHHHhcCCcHHHHHhhcCCC--HHHHHHHHHHHHHhhc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKE--NELRVKVLLGGCIPPLLGLLKSSS--AEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~--~~~~~~i~~~g~I~~Lv~lL~s~~--~e~~~~Aa~aL~~Ls~ 135 (1335)
.++..|-..|+++++.++..|...|..+.++ ...+..+.....+..|+.+++... +.++..++..+.+.+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 3567788889999999999999999999876 345667777778888998887543 3378888888877776
No 240
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=46.12 E-value=6.5e+02 Score=30.89 Aligned_cols=278 Identities=10% Similarity=0.050 Sum_probs=144.1
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccC---hhhHHHHHhcCcHHHHHHHhhcCCH------H-HHHHHHHHHHHhhccC
Q 000714 499 PLVQILESGSAKAKEDSASILRNLCNHS---EDIRACVESADAVPALLWLLKNGSA------N-GKEIAAKTLNHLIHKS 568 (1335)
Q Consensus 499 ~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~---~~~r~~i~~~g~i~~Lv~LL~~~~~------~-~k~~Aa~aL~~L~~~~ 568 (1335)
.+..+++..+.+-|-.|.-....++..+ ..+|+.+.++=+.+-+-+++++++. . -+..+...|..+++.+
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3566677767777888888888888752 2356677787778888888887431 1 2344444444444332
Q ss_pred CCCcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCC-CHH------HHHHHHHHHH
Q 000714 569 DTATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSST-KEE------TQAKSASALA 641 (1335)
Q Consensus 569 ~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~-~~~------v~~~Aa~aL~ 641 (1335)
+ ++++.+++. .||.|..+++.+ +++ +...+=.+|.
T Consensus 95 E-------------------------------lAsh~~~v~-------~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~ 136 (698)
T KOG2611|consen 95 E-------------------------------LASHEEMVS-------RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLY 136 (698)
T ss_pred h-------------------------------hccCHHHHH-------hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 2 334444432 388888888643 333 6677788888
Q ss_pred HHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccC----hhhhHHHHHhCCChHHHHHHhcCCCHHH
Q 000714 642 GIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSV----RENREVAAVARDALSPLVVLAGSPVLEV 717 (1335)
Q Consensus 642 nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 717 (1335)
.++.. +.-...++..|+++.+.+.....+-.--.+.+.-++-+..+. ++.-. .+.. .+..+-+=+...+...
T Consensus 137 ~Va~~-e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~-~fla--li~~va~df~~~~~a~ 212 (698)
T KOG2611|consen 137 LVATA-EAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIE-RFLA--LIAAVARDFAVLHNAL 212 (698)
T ss_pred HHhcC-CchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHH-HHHH--HHHHHHHHHHHhhhHH
Confidence 88877 666777889999999998875543322222222222222111 11100 1111 1223333333355566
Q ss_pred HHHHHHHHHHHhCCch-------HH----HHHHHCCChHHHHHHhhcCChh-hHHHHHHHHHHHhh----cCCCchhHHH
Q 000714 718 AEQATCALANLILDSE-------VS----EKAIAEEIILPATRVLCEGTIS-GKTLAAAAIARLLH----SRKIDYTITD 781 (1335)
Q Consensus 718 k~~Aa~aL~nL~~~~~-------~~----~~~~~~g~v~~L~~ll~~~~~~-~k~~A~~aL~~Ll~----~~~~~~~~~~ 781 (1335)
|.+.+..|..+...+. .+ ..+...|++..|-.-....+.. .-.-|+..+.-+.. .+........
T Consensus 213 KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~hilG~~W~~~geq~t~fL~ 292 (698)
T KOG2611|consen 213 KFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQNKVAPSQRLPALILAANMMHILGEKWLLGGEQKTVFLP 292 (698)
T ss_pred HHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHhcccCchhcChHHHHHHHHHHHhchhhcccCCccceehh
Confidence 7778888876543222 22 3444556655555444433333 11222222221111 1111112233
Q ss_pred HHHhhccHHHHHHhhhcCCCCCCchhHHHHHHHHHHhCC
Q 000714 782 CVNRAGTVLALVSFLESASGSVATSEALDALAILSRSGG 820 (1335)
Q Consensus 782 ~i~~~g~l~~Lv~~~~~~~~~~~~~~al~~L~~l~~~~~ 820 (1335)
.+...+.++..+.+-.+..+ ++ ++.+.+=..+.+++.
T Consensus 293 ll~~la~~evrl~lee~~~E-iK-a~vlt~c~a~~e~~i 329 (698)
T KOG2611|consen 293 LLDILADREVRLVLEESHVE-IK-ASVLTNCLAYKEYEI 329 (698)
T ss_pred hhcchhhHHHHHhhhhcccc-HH-HHHHHHHHHHHHhcc
Confidence 44446666666555544432 22 455555445555543
No 241
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.84 E-value=4.8e+02 Score=29.06 Aligned_cols=132 Identities=25% Similarity=0.271 Sum_probs=83.8
Q ss_pred HHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHH
Q 000714 419 LITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIP 498 (1335)
Q Consensus 419 lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~ 498 (1335)
+-+..+++.+...+.+|..++.++. ... .-.++.|..+.+.++...+.-+...+..+-..++..- +.+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~ 77 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCV----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQ 77 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cch----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHH
Confidence 4456788999999999999998762 111 1235566666777777766667777777764333211 2333
Q ss_pred HHHHh--h------ccC--ChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHh-hcCCHHHHHHHHHHHHHhhc
Q 000714 499 PLVQI--L------ESG--SAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLL-KNGSANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 499 ~Lv~L--L------~~~--~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL-~~~~~~~k~~Aa~aL~~L~~ 566 (1335)
.++.. + .++ ..+.....+..+..+|...++.- ...++.+..++ +..++..+..+..+|..|+.
T Consensus 78 ~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 78 PLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33333 1 111 23344455678888888766622 23568888888 77778888888888888873
No 242
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=44.26 E-value=75 Score=36.15 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=67.3
Q ss_pred hHHHHHHhhcCCCC-hhhHHHHHHHHHHHhhcCChhhHHHHHhc-C-CHHHHHHHhccC----ChhHHHHHHHHHHHHhh
Q 000714 153 VPVLWEQLKNGLKS-GNVVDNLLTGALRNLSTSTEGFWAATVQA-G-GIDILVKLLTLG----QSSTQAHVCFLLACMME 225 (1335)
Q Consensus 153 Ip~Lv~LL~~~~~~-~~~v~~~a~~aL~nLs~~~~~~~~~i~~~-g-~I~~Lv~lL~s~----~~~v~~~aa~~L~~La~ 225 (1335)
...+..++...... .+..+-.+.+.+.|+-...... ..+.+. + .+...+..+... +..++..++.++.|++.
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv 186 (268)
T PF08324_consen 108 ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSV 186 (268)
T ss_dssp HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 34445555444322 2224446777888877554433 334332 2 344444444443 57788888888888872
Q ss_pred cCcchh-hhHhccccHHHHHHHh-cCCCCHHHHHHHHHHHHhcccCCHHHHHH
Q 000714 226 EDVSVC-SRVLAADATKQLLKLL-GSGNEASVRAEAAGALKSLSDHCKDARRE 276 (1335)
Q Consensus 226 ~~~~~~-~~i~~~g~i~~Lv~lL-~s~~~~~vr~~Aa~aL~nLs~~~~e~r~~ 276 (1335)
..-... ..-.....+..+++.+ ....+.|....+..+|++|.+.++..+..
T Consensus 187 ~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 187 LLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 211111 1111223456666643 33345689999999999999755444433
No 243
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.52 E-value=1e+03 Score=32.55 Aligned_cols=212 Identities=15% Similarity=0.134 Sum_probs=127.0
Q ss_pred CCHHHHHHHHHHHHHhhccCCC-C----cHHH----HHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHH
Q 000714 549 GSANGKEIAAKTLNHLIHKSDT-A----TISQ----LTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVE 619 (1335)
Q Consensus 549 ~~~~~k~~Aa~aL~~L~~~~~~-~----~i~~----Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~ 619 (1335)
.+..++..+-+.|..++..+.. + .+.. |.+-+.+.....+.....++..+....+ ......+ ...|+
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~--~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS--AEHCDLI--PKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc--HHHHHHH--HHHHH
Confidence 3567888899999998876321 1 1222 2223344445566666667766544322 1112212 23466
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcC------ChHHHHHhhh----cCChhHHHHHHHHHHHHHccC
Q 000714 620 TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVK------TLWSVMKLLD----VGSECILVEASRCLAAIFLSV 689 (1335)
Q Consensus 620 ~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g------~v~~Lv~LL~----~~~~~v~~~aa~aL~~L~~~~ 689 (1335)
.++-.++..|...++.+-.+|..|+. .....+.| .+...+..+. +.........+.++..++...
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 66666677889999999999988883 11112222 3444444443 333333333355666555322
Q ss_pred hhhhHHHHHhCC----ChHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchHHHHHHHCCChHHHHHHhhcCChhhHHHHHH
Q 000714 690 RENREVAAVARD----ALSPLVVLAGSPVLEVAEQATCALANLIL-DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAA 764 (1335)
Q Consensus 690 ~~~~~~~i~~~g----~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~-~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~ 764 (1335)
. .+.+.+ .+.-++..|.+.+.+++..|+..+..++. .|+....-....+++.+..+++++...++...-.
T Consensus 817 ~-----~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 817 K-----NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRL 891 (1176)
T ss_pred h-----ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2 233333 44445566778999999999999888874 5555555556677888999988888887777766
Q ss_pred HHHHHhhcCC
Q 000714 765 AIARLLHSRK 774 (1335)
Q Consensus 765 aL~~Ll~~~~ 774 (1335)
-|-.|.+-+.
T Consensus 892 LlekLirkfg 901 (1176)
T KOG1248|consen 892 LLEKLIRKFG 901 (1176)
T ss_pred HHHHHHHHhC
Confidence 6666666544
No 244
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=42.41 E-value=1.5e+02 Score=30.22 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHccCCCchhHHHHHHHHHHHhcCCh-HHHHHhcccCCcHHHHHHHhccCCHHHHHHHHHHHHHhhcCc--
Q 000714 20 ASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDTRE-NAFSAVGSHSQAVPVLVSLLRSGSLAVKIQAATVLGSLCKEN-- 96 (1335)
Q Consensus 20 ~~v~~~i~~l~~~~~s~~ek~~Al~~L~~Ls~~~~-~ar~~i~~~~g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~-- 96 (1335)
+.+..+|+...+.....+ --.....+.+..+.++ .+++ ++..|-..|+++++.++..|+.+|..+.++-
T Consensus 4 ~~~~~li~kATs~~~~~~-Dw~~~l~icD~i~~~~~~~ke-------a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~ 75 (140)
T PF00790_consen 4 SSITELIEKATSESLPSP-DWSLILEICDLINSSPDGAKE-------AARALRKRLKHGNPNVQLLALTLLDALVKNCGP 75 (140)
T ss_dssp SHHHHHHHHHT-TTSSS---HHHHHHHHHHHHTSTTHHHH-------HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH
T ss_pred ChHHHHHHHHhCcCCCCC-CHHHHHHHHHHHHcCCccHHH-------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH
Confidence 357778888765433322 2344445666655432 3333 5678889999999999999999999998764
Q ss_pred hhHHHHHhcCCcHHHHHhhcCC-CHH---HHHHHHHHHHHhhc
Q 000714 97 ELRVKVLLGGCIPPLLGLLKSS-SAE---GQIAAAKTIYAVSQ 135 (1335)
Q Consensus 97 ~~~~~i~~~g~I~~Lv~lL~s~-~~e---~~~~Aa~aL~~Ls~ 135 (1335)
..+..+.....+..|.+++.+. ... ++..++..+...+.
T Consensus 76 ~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 76 RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4456666666778888877643 333 78888888877776
No 245
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=41.72 E-value=1.1e+03 Score=33.66 Aligned_cols=344 Identities=16% Similarity=0.169 Sum_probs=161.2
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHh----
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDS---- 487 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~---- 487 (1335)
....+++++...+..+|+..+..|=.+..+... ...+..|..++.. ++++.-..+.+|.||.- +++.
T Consensus 193 l~~kl~~~l~~ap~~lq~eiI~~LPeIl~ds~h-------~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~L-s~~~l~~v 263 (1426)
T PF14631_consen 193 LTDKLFEVLSIAPVELQKEIISSLPEILDDSQH-------DEVVEELLELLQE-NPELTVPILDALSNLNL-SPELLEEV 263 (1426)
T ss_dssp HHHHHHHHHHHS-TTTHHHHHHTHHHHS-GGGH-------HHHHHHHHHHHHH--STTHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhcchhH-------HHHHHHHHHHHhc-CCchhhhHHHHHhcCCC-CHHHHHHH
Confidence 344455555555556666666666555543211 1335556666643 33445556777777764 3443
Q ss_pred HHHHHh------cCCHHHHHHhhcc-CC-hHHHHHHHHHHHHHhcc----------C-hhhHHHH----------HhcCc
Q 000714 488 KWAITA------AGGIPPLVQILES-GS-AKAKEDSASILRNLCNH----------S-EDIRACV----------ESADA 538 (1335)
Q Consensus 488 r~~i~~------~g~I~~Lv~LL~~-~~-~~v~~~Aa~aL~nL~~~----------~-~~~r~~i----------~~~g~ 538 (1335)
|..+.+ ...+|.+++.|-. -+ .+..+-....=.+|-.. + ...+..- ...+.
T Consensus 264 r~~vl~~L~s~~~e~LP~lirFLL~s~t~~da~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~ 343 (1426)
T PF14631_consen 264 REKVLEKLSSVDLEDLPVLIRFLLQSITPSDAVEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDC 343 (1426)
T ss_dssp HHHHHHSTTSS-TTHHHHHHHHHHHS-SSTTHHHHHHHHHHHHH-------------------------------HHHHH
T ss_pred HHHHHHHHhcCChhhhHHHHHHHHHhCCcccHHHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccH
Confidence 333322 2348888885543 22 22222111111112100 0 0000000 00112
Q ss_pred HHHHHHHhhcCCHHHHHHH---HHHHHHhhccCCCCcHHHHHHH-hcCCCcchHHHHHHHHHHhhhhcCch-HHHHHhhh
Q 000714 539 VPALLWLLKNGSANGKEIA---AKTLNHLIHKSDTATISQLTAL-LTSDLPESKVYVLDALKSMLSVVSFS-DILREGSA 613 (1335)
Q Consensus 539 i~~Lv~LL~~~~~~~k~~A---a~aL~~L~~~~~~~~i~~Lv~L-L~s~~~~~k~~a~~aL~~L~~~~~~~-~~~~~~i~ 613 (1335)
...+++.++++-.-.+..+ .+++.++....+...+.-++-+ +.+.+...+-++...+..-....... ..++..+.
T Consensus 344 ~~lil~~lks~lr~~k~l~eawiK~I~~~~~~~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~ 423 (1426)
T PF14631_consen 344 EKLILDVLKSGLRFSKDLSEAWIKAIESLEDASDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKSGHITEQLLDQTFK 423 (1426)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHGGGSTT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHhcCCCccccchHHHHHHHHHHcCCccchHHHHHHHHHHHHhCcccHHHHHHHHh
Confidence 2345555555422222222 3344444433344555554443 34434344455555555432222111 12222211
Q ss_pred h-----cchHHHHHH----hhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHH
Q 000714 614 A-----NDAVETMIK----ILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAA 684 (1335)
Q Consensus 614 ~-----~~~i~~Lv~----LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~ 684 (1335)
. ...++.+.. ++++.++.++.-+...-..++..... .....++..|+..+.+++...+..|...+..
T Consensus 424 ~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~ 499 (1426)
T PF14631_consen 424 GHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCE 499 (1426)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 223444443 67889999999999998888877432 2234477888888888888778888888888
Q ss_pred HHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHH
Q 000714 685 IFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAA 764 (1335)
Q Consensus 685 L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~ 764 (1335)
++..++..-+ .-+..+..++..+..-+..--+..-..|+.|+.+.......+..+.-..+-+-+.+.....|+.++-
T Consensus 500 L~~~~~~~l~---~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GII 576 (1426)
T PF14631_consen 500 LAEKNPSELQ---PFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGII 576 (1426)
T ss_dssp HHHH-HHHHH---HTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHH
T ss_pred HHhccHHHHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHH
Confidence 8864433211 1123444555555655555556667777777632221122233333333444455555566766666
Q ss_pred HHHHHhh
Q 000714 765 AIARLLH 771 (1335)
Q Consensus 765 aL~~Ll~ 771 (1335)
+.+.++.
T Consensus 577 Gav~~i~ 583 (1426)
T PF14631_consen 577 GAVMMIK 583 (1426)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666555
No 246
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=41.69 E-value=80 Score=29.77 Aligned_cols=79 Identities=15% Similarity=0.137 Sum_probs=53.7
Q ss_pred HHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHH
Q 000714 499 PLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTA 578 (1335)
Q Consensus 499 ~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~ 578 (1335)
..+..+.++.+.+|..+...|.+|..... ...+...+.+..+...+++.++-+--.|...|..|+......+++.|+.
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~ 84 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLD 84 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHH
Confidence 44556777788899999999999887532 1222224566777777788777777788888888876655455555554
Q ss_pred H
Q 000714 579 L 579 (1335)
Q Consensus 579 L 579 (1335)
.
T Consensus 85 ~ 85 (92)
T PF10363_consen 85 E 85 (92)
T ss_pred H
Confidence 4
No 247
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=41.66 E-value=32 Score=24.30 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=19.9
Q ss_pred hHhHHHHHHHhhcchhhhhhHHHHhhhhHHHHHhhc
Q 000714 1258 ARYSAAKALESLFSADHIRNAESARQAVQPLVEILN 1293 (1335)
Q Consensus 1258 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 1293 (1335)
+|+.|+++|-.+=| ..|+.||++.|+
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 58999999999986 467788887663
No 248
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=38.08 E-value=1.9e+02 Score=30.32 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=41.5
Q ss_pred hHHHHHHhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000714 370 VEQTLVNQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLITMATNEVQEELVRALLKL 438 (1335)
Q Consensus 370 i~~~Lv~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~~L 438 (1335)
++..|+..++..+-..-...++.++.+++.....+-.-.-...+|.++..++..+...++....-|..|
T Consensus 87 vi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 87 VINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555544444445667778777765433222212246778888888877777777766666554
No 249
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=37.00 E-value=2.5e+02 Score=36.20 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=76.5
Q ss_pred cCCHHHHHHHhccCChhHHHHHHHHHHHHhhcCcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcccCCHHHH
Q 000714 195 AGGIDILVKLLTLGQSSTQAHVCFLLACMMEEDVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLSDHCKDAR 274 (1335)
Q Consensus 195 ~g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs~~~~e~r 274 (1335)
...|+.|..+-..+-..++..+..++..+....+.. +...+..||+-|.+++. .+-..|...|.+|...++..+
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEq-----E~~LL~~lVNKlGDpqn-KiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQ-----ENNLLVLLVNKLGDPQN-KIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHH-----HHHHHHHHHHhcCCcch-hhhhhHHHHHHHHHhhCCcce
Confidence 356777777777777889999999998887654422 34567788999998876 778888888888887777665
Q ss_pred HHHHHCCChHHHHHHhcCCCccchhhhhHHHHHHHHHHHHHHhh
Q 000714 275 REIAGSNGIPAMINATIAPSKEFMQGEYAQALQENAMCALANIS 318 (1335)
Q Consensus 275 ~~i~~~Ggi~~Lv~lL~~~~~e~~~~~~d~~v~~~A~~aL~nLs 318 (1335)
..+ +..+.+++..|+. +...+.+|+..|..+.
T Consensus 377 ~Vv-----i~EIer~~FRpn~-------~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 377 IVV-----IDEIERLAFRPNV-------SERAHYYAVIFLNQMK 408 (988)
T ss_pred eeh-----HHHHHHHHcccCc-------cccceeehhhhhhhhH
Confidence 443 4456677777653 4566778887776644
No 250
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.56 E-value=1.6e+02 Score=33.96 Aligned_cols=140 Identities=15% Similarity=0.155 Sum_probs=93.0
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHH
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAI 491 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i 491 (1335)
.+...+..|.+.++..+...+..+..|+..+.+.-.... ...|..+++-+++....+-..|+.++..+...-.. .+
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---SI 164 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 345566677788888888888888888887765433333 35678888888888888999999888887642111 11
Q ss_pred HhcCCHHHHHH-hhccCC---hHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHh
Q 000714 492 TAAGGIPPLVQ-ILESGS---AKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKNGSANGKEIAAKTLNHL 564 (1335)
Q Consensus 492 ~~~g~I~~Lv~-LL~~~~---~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L 564 (1335)
.+ ....++. ||...+ .-+++.|-.+|..+..+-.. .-+++.|+..++..++.++..++....+.
T Consensus 165 ~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 165 DQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 11 2333333 444432 34788888888888775211 23467777778888888887777665544
No 251
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=35.33 E-value=5e+02 Score=31.22 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=39.1
Q ss_pred HhhcccHHHHHHHhcC-CCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHH-hhcc--CChHHHHHHHHHHHHHhc
Q 000714 449 LQGREGIQLLISLLGL-SSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQ-ILES--GSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 449 i~~~g~I~~Lv~lL~~-~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~-LL~~--~~~~v~~~Aa~aL~nL~~ 524 (1335)
+.+.+-.+-+-+-+.. +...-+.+|+..|..|+..-++....+.. +.|..+++ .-.+ .+.+.+..|+..+..|+.
T Consensus 206 lfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~ 284 (370)
T PF08506_consen 206 LFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALAS 284 (370)
T ss_dssp HHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHB
T ss_pred HHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHh
Confidence 4444555555555553 33456778888999998532222111111 12222222 1112 355778888888888887
Q ss_pred c
Q 000714 525 H 525 (1335)
Q Consensus 525 ~ 525 (1335)
.
T Consensus 285 k 285 (370)
T PF08506_consen 285 K 285 (370)
T ss_dssp S
T ss_pred h
Confidence 5
No 252
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=35.21 E-value=6.1e+02 Score=32.55 Aligned_cols=137 Identities=12% Similarity=0.089 Sum_probs=92.2
Q ss_pred HHHHHHhhcc----CChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhh-cCCHHHHHHHHHHHHHhhccCCC-
Q 000714 497 IPPLVQILES----GSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLK-NGSANGKEIAAKTLNHLIHKSDT- 570 (1335)
Q Consensus 497 I~~Lv~LL~~----~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~-~~~~~~k~~Aa~aL~~L~~~~~~- 570 (1335)
-|.+..+..+ .++.+|..|--.|..+-+-+-++.. .-.|.|+..+. .+.|..|..|.-.|..++..-+.
T Consensus 894 ~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~ 968 (1128)
T COG5098 894 KPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTT 968 (1128)
T ss_pred hHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhh
Confidence 3444445554 4788999888899888765444332 24788888887 67888898888888777543221
Q ss_pred --CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 000714 571 --ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFET 646 (1335)
Q Consensus 571 --~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~ 646 (1335)
..-.-|..-|.+.+..+|..+.-.+..+. ++ ..+.-.|-++.+..+|.+++..+..-|-..+..++..
T Consensus 969 ~de~t~yLyrrL~De~~~V~rtclmti~fLi-la-------gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098 969 ADEHTHYLYRRLGDEDADVRRTCLMTIHFLI-LA-------GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred hHHHHHHHHHHhcchhhHHHHHHHHHHHHHH-Hc-------cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence 11223555567777788888777776542 11 2233356688899999999998888888877777754
No 253
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.81 E-value=41 Score=32.57 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=35.1
Q ss_pred HHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHH
Q 000714 83 IQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQ 123 (1335)
Q Consensus 83 ~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~ 123 (1335)
-.....|..|+..|+....+++.|+++.|+.+|.++|.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 34566778888889999999999999999999999998763
No 254
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.19 E-value=9.9e+02 Score=29.58 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHH
Q 000714 618 VETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAA 697 (1335)
Q Consensus 618 i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i 697 (1335)
+-.+..-.++++...+.-|++.|+|.....++-+......-....+..|+++.+.+++.++..++......- .+ + -
T Consensus 260 ~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~-~~-~--~ 335 (533)
T KOG2032|consen 260 LLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA-SN-D--D 335 (533)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh-hh-c--c
Confidence 334444456678899999999999999886664443333323334445556677889999998888776321 11 1 1
Q ss_pred HhCCCh---HHHHHHhcCCCHHHHHHHHHHHHHHh
Q 000714 698 VARDAL---SPLVVLAGSPVLEVAEQATCALANLI 729 (1335)
Q Consensus 698 ~~~g~i---~~Lv~lL~~~~~~vk~~Aa~aL~nL~ 729 (1335)
.....+ -.+..++.+.+++.+..|...+..|.
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALA 370 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHH
Confidence 222333 34456778888888877777666654
No 255
>PRK09169 hypothetical protein; Validated
Probab=34.09 E-value=1.9e+03 Score=32.77 Aligned_cols=44 Identities=14% Similarity=0.021 Sum_probs=21.2
Q ss_pred HhCCchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 000714 728 LILDSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1335)
Q Consensus 728 L~~~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~ 771 (1335)
|..+++....+-..++-..|-.+.+-.....-+.|++.|...+.
T Consensus 738 L~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~a~~~La~~lg 781 (2316)
T PRK09169 738 LAADADLRQAMNPQGLANSLNALSKWPQEPACQQAALLLAERLG 781 (2316)
T ss_pred HhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 44444444444333444444444444444445555556665554
No 256
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=33.70 E-value=9.3e+02 Score=29.09 Aligned_cols=78 Identities=10% Similarity=-0.070 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCCHHHHHHHhccC-----ChhHHHHHHHHHHHHhhcCcchh-hhHhccccHHHHHHH
Q 000714 173 LLTGALRNLSTSTEGFWAATVQAGGIDILVKLLTLG-----QSSTQAHVCFLLACMMEEDVSVC-SRVLAADATKQLLKL 246 (1335)
Q Consensus 173 ~a~~aL~nLs~~~~~~~~~i~~~g~I~~Lv~lL~s~-----~~~v~~~aa~~L~~La~~~~~~~-~~i~~~g~i~~Lv~l 246 (1335)
-+..+|.|+...++..+...++..-...+++.+... ...++..-..+|--+.....+.+ ..+.+.++++.+-+.
T Consensus 116 EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~ 195 (532)
T KOG4464|consen 116 ESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNW 195 (532)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHH
Confidence 356788888887777767677777777777666432 22344444444433332233344 345678888888888
Q ss_pred hcCC
Q 000714 247 LGSG 250 (1335)
Q Consensus 247 L~s~ 250 (1335)
+.+.
T Consensus 196 led~ 199 (532)
T KOG4464|consen 196 LEDK 199 (532)
T ss_pred hhcc
Confidence 8653
No 257
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=32.72 E-value=1.7e+03 Score=31.74 Aligned_cols=146 Identities=14% Similarity=0.196 Sum_probs=92.4
Q ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHH
Q 000714 411 EAKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWA 490 (1335)
Q Consensus 411 g~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~ 490 (1335)
+.+..++..|......+|..|.+||..+...++.. +.....-..+..-+-+.+..|++.|+..++...-..++.-..
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 45666777888778888999999998887655432 111122233334455667788999988887554344554333
Q ss_pred HHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHHhcCcHHHHHHHhhc---CCHHHHHHHHHHHHHhhcc
Q 000714 491 ITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVESADAVPALLWLLKN---GSANGKEIAAKTLNHLIHK 567 (1335)
Q Consensus 491 i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~~~g~i~~Lv~LL~~---~~~~~k~~Aa~aL~~L~~~ 567 (1335)
.. ..+..-..+....+|.++..+++.+|...|+.-.. +...+++++. ....+++.+..++.+++..
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 32 23344444556788999999999998765554332 3344455444 3334788888999999877
Q ss_pred CCC
Q 000714 568 SDT 570 (1335)
Q Consensus 568 ~~~ 570 (1335)
+-+
T Consensus 962 p~~ 964 (1692)
T KOG1020|consen 962 PVP 964 (1692)
T ss_pred CCC
Confidence 644
No 258
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=31.42 E-value=1.1e+03 Score=29.25 Aligned_cols=82 Identities=20% Similarity=0.162 Sum_probs=45.3
Q ss_pred HhhCCCCchhHHHHHHHHHHHHhCCcchhhhhcccccHHHHHHHHc-CCCHHHHHHHHHHHHHhhhccCchhHHHhhccc
Q 000714 376 NQFKPRLPFLVQERTIEALASLYGNPLLSIKLENSEAKRLLVGLIT-MATNEVQEELVRALLKLCNNEGSLWRALQGREG 454 (1335)
Q Consensus 376 ~LL~~~~~~~~q~~aa~aL~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~ 454 (1335)
.|+.+..+.+.|..+.+-|..+....+.+....... +...+. ...++.-..-+.+|..|+.+..+.. ..+.+.
T Consensus 35 DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~----fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi~--~~~~~i 108 (464)
T PF11864_consen 35 DLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAE----FFRDISDPSNDDDFDLRLEALIALTDNGRDID--FFEYEI 108 (464)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHH----HHHHHhcCCCchhHHHHHHHHHHHHcCCcCch--hcccch
Confidence 456666677788888888887765543321111111 222222 3334444455667777777765542 234566
Q ss_pred HHHHHHHhc
Q 000714 455 IQLLISLLG 463 (1335)
Q Consensus 455 I~~Lv~lL~ 463 (1335)
.|.|...|.
T Consensus 109 ~~~L~~wl~ 117 (464)
T PF11864_consen 109 GPFLLSWLE 117 (464)
T ss_pred HHHHHHHHH
Confidence 677776663
No 259
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.17 E-value=1.8e+02 Score=29.28 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=57.2
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChH-hHHHHHhcCCHHHHHHhhcc---CChHHHHHHHHHHHHHhc
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDD-SKWAITAAGGIPPLVQILES---GSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~-~r~~i~~~g~I~~Lv~LL~~---~~~~v~~~Aa~aL~nL~~ 524 (1335)
.++..|-.-|+++++.++..|+.+|-.+...+.. ....+.....+..|++++.. .++.++..+...+.+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999888765444 46666666778889999875 377899999998877665
No 260
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=30.02 E-value=2.9e+02 Score=35.42 Aligned_cols=179 Identities=13% Similarity=0.092 Sum_probs=98.2
Q ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHH
Q 000714 452 REGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRA 531 (1335)
Q Consensus 452 ~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~ 531 (1335)
.+.+|.|+++.+..+..+|-.-+ .++-...+.....+.+....|.+...+.+.++.+|+..+..+..|+.. -..+
T Consensus 329 ~~i~p~l~kLF~~~Dr~iR~~LL---~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k-L~~~- 403 (690)
T KOG1243|consen 329 VRIIPVLLKLFKSPDRQIRLLLL---QYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK-LSKR- 403 (690)
T ss_pred cchhhhHHHHhcCcchHHHHHHH---HhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh-hchh-
Confidence 46789999999999998887444 333322233455677788999999999999999999999988887743 1111
Q ss_pred HHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCc-----HHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchH
Q 000714 532 CVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTAT-----ISQLTALLTSDLPESKVYVLDALKSMLSVVSFSD 606 (1335)
Q Consensus 532 ~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~-----i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~ 606 (1335)
......+..+.++--+.....|-+..-+|......-.+.. +..+..-+++.-...+.....++.........++
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~ 482 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSE 482 (690)
T ss_pred -hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhh
Confidence 1111122222222222233334444444444433321111 1112222333444445555455443322222222
Q ss_pred HHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000714 607 ILREGSAANDAVETMIKILSSTKEETQAKSASALAG 642 (1335)
Q Consensus 607 ~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~n 642 (1335)
.+...+|.++.+.-+.+..++..|-.++..
T Consensus 483 ------va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 483 ------VANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ------hhhhccccccccccCcccchhhHHHHHHHH
Confidence 224457777777777777777666655543
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=29.49 E-value=1.6e+02 Score=30.19 Aligned_cols=72 Identities=10% Similarity=0.135 Sum_probs=57.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCCh-HhHHHHHhcCCHHHHHHhhcc-CChHHHHHHHHHHHHHhc
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNEND-DSKWAITAAGGIPPLVQILES-GSAKAKEDSASILRNLCN 524 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~-~~r~~i~~~g~I~~Lv~LL~~-~~~~v~~~Aa~aL~nL~~ 524 (1335)
.++..|..-|.+.++.++..|+.+|-.+...+. .....+.....+..|++++.. .++.++..+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 557777888888999999999999988875433 346677788889999999988 688999999988877654
No 262
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.01 E-value=1.2e+03 Score=28.92 Aligned_cols=141 Identities=12% Similarity=0.071 Sum_probs=82.6
Q ss_pred cCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHH-HhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcC---C
Q 000714 421 TMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLIS-LLGLSSEQQQECSVALLCLLSNENDDSKWAITAAG---G 496 (1335)
Q Consensus 421 ~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~-lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g---~ 496 (1335)
++++...+..|++.|.+.....+...+.-. .--+..++. +....+.+++..+..+|..+.. ...+.. .+.+ +
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~-~~~~~~--l~~~~l~i 343 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLE-KASNDD--LESYLLNI 343 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-hhhhcc--hhhhchhH
Confidence 456668889999999999887444322111 122444554 4445568899999988887762 222211 1122 2
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHhcc-ChhhHHHHHh--cCcHHHHHHHhhcCCHHHHHHHHHHHHHhhc
Q 000714 497 IPPLVQILESGSAKAKEDSASILRNLCNH-SEDIRACVES--ADAVPALLWLLKNGSANGKEIAAKTLNHLIH 566 (1335)
Q Consensus 497 I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~-~~~~r~~i~~--~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~ 566 (1335)
.-.+..+..+.+++.+..+...++.|+.. ....+..+.+ -+...+++-.+++.+|.+-. |++.....+.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~ 415 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCY 415 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcC
Confidence 33466688888999999998888887753 1233333332 12334455556666665433 5555554433
No 263
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=28.95 E-value=1.8e+02 Score=30.58 Aligned_cols=69 Identities=22% Similarity=0.167 Sum_probs=48.2
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHhcC--CcHHHHHhhcCCC-HHHHHHHHHHHHHhhc
Q 000714 66 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLLGG--CIPPLLGLLKSSS-AEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 66 ~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g--~I~~Lv~lL~s~~-~e~~~~Aa~aL~~Ls~ 135 (1335)
.+..+.++|+++++..|..++..+...+.+.+ .+.+.+.+ =+..+++.|+..+ +.+++.+..+|..+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45678899999999999999998888875432 23332322 3566777787654 4557788888877766
No 264
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=28.81 E-value=6.4e+02 Score=27.85 Aligned_cols=107 Identities=7% Similarity=0.038 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhh---cC--ChhHHHHHHHHHHHHHccChh-hhHHHHHhCCC
Q 000714 629 KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLD---VG--SECILVEASRCLAAIFLSVRE-NREVAAVARDA 702 (1335)
Q Consensus 629 ~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~---~~--~~~v~~~aa~aL~~L~~~~~~-~~~~~i~~~g~ 702 (1335)
.+.-|..-+..|..+..+.++.+..+.++..---+-..|. +. -+-.+..+...+.++...+.+ ..+ .......
T Consensus 112 ~~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~-fLltTei 190 (315)
T COG5209 112 RESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIK-FLLTTEI 190 (315)
T ss_pred hhhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHH-HHHhhhH
Confidence 3334444455555555556888888888876443444442 22 233556677888888876654 344 4777889
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHhCCchHHH
Q 000714 703 LSPLVVLAGSPVLEVAEQATCALANLILDSEVSE 736 (1335)
Q Consensus 703 i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~~~~~~~ 736 (1335)
+|...+++..+++-.|..|+.++..+..|.....
T Consensus 191 vPLcLrIme~gSElSktvaifI~qkil~dDvGLq 224 (315)
T COG5209 191 VPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQ 224 (315)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHH
Confidence 9999999999999999999999988877665443
No 265
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=28.72 E-value=1.5e+02 Score=31.91 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=52.2
Q ss_pred cHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHHh-cCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 000714 66 AVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVLL-GGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 66 ~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~-~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
.++.+++++-+.+..++..|...+....+. .++. ..++|.|+.+..++++.++..|...+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 567788888899999999999998876421 1111 1489999999999999999999999988877
No 266
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=3.8e+02 Score=31.06 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHHHHHhccChhhHHHHH
Q 000714 455 IQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASILRNLCNHSEDIRACVE 534 (1335)
Q Consensus 455 I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~~~~~~r~~i~ 534 (1335)
+...+..|.+.+......+...++.|+..+++....... ..|..+++-+++....+-..|+.++..+... +...+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~---ln~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSS---LNNSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 444555666667777777777777777655654433322 2566788888888778888888888888753 111111
Q ss_pred hcCcHH-HHHHHhhcCCHH---HHHHHHHHHHHhhccCCC-CcHHHHHHHhcCCCcchHHHHHH
Q 000714 535 SADAVP-ALLWLLKNGSAN---GKEIAAKTLNHLIHKSDT-ATISQLTALLTSDLPESKVYVLD 593 (1335)
Q Consensus 535 ~~g~i~-~Lv~LL~~~~~~---~k~~Aa~aL~~L~~~~~~-~~i~~Lv~LL~s~~~~~k~~a~~ 593 (1335)
+ ... .+..|+..++.. +++.|-++|..+..+..+ ..++.|+..+...++.++..++.
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHSNPRVRAKAAL 227 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhhchhhhhhhhc
Confidence 1 222 233344443322 578888899888877654 45556777677777776555433
No 267
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=27.76 E-value=1.8e+02 Score=29.78 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=56.1
Q ss_pred CCHHHHHHHhccCChhHHHHHHHHHHHHhhc-CcchhhhHhccccHHHHHHHhcCCCCHHHHHHHHHHHHhcc
Q 000714 196 GGIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEASVRAEAAGALKSLS 267 (1335)
Q Consensus 196 g~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~vr~~Aa~aL~nLs 267 (1335)
.++..|.+-|.++++.++..|..+|-.++.+ ......++.+.+.+..|++++....+..++..+...+..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 4566677888889999999999888766643 33466778889999999999986555688888888887655
No 268
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=26.51 E-value=5.3e+02 Score=27.64 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=50.9
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhccCchhHHHhhcccHHHHHHHhcCCCHHHHHHHHHHHHHhccC
Q 000714 412 AKRLLVGLITMATNEVQEELVRALLKLCNNEGSLWRALQGREGIQLLISLLGLSSEQQQECSVALLCLLSNE 483 (1335)
Q Consensus 412 ~i~~Lv~lL~~~~~~v~~~A~~aL~~Ls~~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~ 483 (1335)
.++.++++..+.+..++..|+..+.......=.+- ...+|.|+.+..++++.++..|...+..+...
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK 75 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEK 75 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence 34556667778888999999988877654321111 25689999999999999999999999999753
No 269
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=26.01 E-value=3.8e+02 Score=34.34 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=111.6
Q ss_pred CcHHHHHHHhcCCCcchHHHHHHHHHHhhhhcCchHHHHHhhhhcchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhh
Q 000714 571 ATISQLTALLTSDLPESKVYVLDALKSMLSVVSFSDILREGSAANDAVETMIKILSSTKEETQAKSASALAGIFETRKDL 650 (1335)
Q Consensus 571 ~~i~~Lv~LL~s~~~~~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~ 650 (1335)
+.++.|++++...+..++.....-+-. .-+.+...+.....+|.+..-+.+.|+.+++....++..|+..-..+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~------~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEK------YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHH------HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 467788888888877776654433332 11222233445667999999999999999999999998887442211
Q ss_pred HHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 000714 651 RESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVVLAGSPVLEVAEQATCALANLIL 730 (1335)
Q Consensus 651 ~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~vk~~Aa~aL~nL~~ 730 (1335)
.........+-.+-.+....++.....+++.+....... ....-.+.++.+-++++-...|..+.++++....
T Consensus 404 ---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred ---hhcHHHHHHHHhhCccccCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 111111222222223344556777777777766442211 2233345566677888877888888888877664
Q ss_pred CchHHHHHHHCCChHHHHHHhhcCChhhHHHHHHHHHHHhh
Q 000714 731 DSEVSEKAIAEEIILPATRVLCEGTISGKTLAAAAIARLLH 771 (1335)
Q Consensus 731 ~~~~~~~~~~~g~v~~L~~ll~~~~~~~k~~A~~aL~~Ll~ 771 (1335)
-.+.. =++..+++.++-+..+.+..++..|-.++-..+.
T Consensus 477 ~~~~~--~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 477 YFDQS--EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred ccchh--hhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 33322 1234456666666666666666666666666664
No 270
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=25.63 E-value=6.4e+02 Score=28.07 Aligned_cols=128 Identities=14% Similarity=0.130 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCC-------------h-HHHH----HHHHHHHHHhccChh
Q 000714 467 EQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGS-------------A-KAKE----DSASILRNLCNHSED 528 (1335)
Q Consensus 467 ~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~-------------~-~v~~----~Aa~aL~nL~~~~~~ 528 (1335)
......++..+..|.. .++....+.+.+.++.+...|..-+ + .+.. .=...|+.++.+ +.
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 4445556667777774 4666666667778887777665431 1 1111 124577888874 77
Q ss_pred hHHHHHhcCcHHHHHHHhhcCCHHHHHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHh
Q 000714 529 IRACVESADAVPALLWLLKNGSANGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSM 598 (1335)
Q Consensus 529 ~r~~i~~~g~i~~Lv~LL~~~~~~~k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L 598 (1335)
-...+.+.+....+..+....+. .....-.|.+|-...+...-.-|-+.|.++++.++.+|...|+.+
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~~~~~R~iLsKaLt~~s~~iRl~aT~~L~~l 223 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSVDGHPRIILSKALTSGSESIRLYATKHLRVL 223 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCCccHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 77788889999999998887533 223333556664444433344466778888888888887777653
No 271
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=25.08 E-value=8.9e+02 Score=31.36 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhcCCh--HHHHHhcccCCcHHHHHHH-hccCCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHh
Q 000714 38 EKEYSLRQLLELIDTRE--NAFSAVGSHSQAVPVLVSL-LRSGSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGL 114 (1335)
Q Consensus 38 ek~~Al~~L~~Ls~~~~--~ar~~i~~~~g~v~~Lv~l-L~s~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~l 114 (1335)
-.+.+++.+-.+++.-| ..++ -.+|.+-.+ +++.+..+|.+++.+++.+. +...+..-..-+.++.+.
T Consensus 405 iQ~~~L~~lptv~e~iD~~~vk~------~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 405 IQELALQILPTVAESIDVPFVKQ------AILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDKAAVLDELLPILKC 475 (700)
T ss_pred hHHHHHHhhhHHHHhccHHHHHH------HHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHH
Confidence 34556666666655433 2222 234555444 35677789999999999997 222333323456677777
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCCCCccccchhhhcCChHHHHHHhhcCC
Q 000714 115 LKSSSAEGQIAAAKTIYAVSQGGAKDYVGSKIFSTEGVVPVLWEQLKNGL 164 (1335)
Q Consensus 115 L~s~~~e~~~~Aa~aL~~Ls~~~~~d~~~~~~l~~~G~Ip~Lv~LL~~~~ 164 (1335)
.+..+++.......+..++.. .+.+..++..+.++|.+|-+...+.
T Consensus 476 ~~~~dp~iv~~~~~i~~~l~~----~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 476 IKTRDPAIVMGFLRIYEALAL----IIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHh----hcccceeeehhhhhhhhhhhhhccc
Confidence 778888887777777777776 4443356778889999999888764
No 272
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=24.81 E-value=1.2e+03 Score=27.47 Aligned_cols=150 Identities=17% Similarity=0.157 Sum_probs=90.5
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHhc-cChhhHHHHHh-cC-cHHHHHHHhhcCC-------------HHHHHHHHHH
Q 000714 497 IPPLVQILESGSAKAKEDSASILRNLCN-HSEDIRACVES-AD-AVPALLWLLKNGS-------------ANGKEIAAKT 560 (1335)
Q Consensus 497 I~~Lv~LL~~~~~~v~~~Aa~aL~nL~~-~~~~~r~~i~~-~g-~i~~Lv~LL~~~~-------------~~~k~~Aa~a 560 (1335)
+..+...|.+........+.+.|..++. ++......+.+ -+ ..+.+.+++.... +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 5556666766666666677777777776 44344444433 12 2344444443211 1566666666
Q ss_pred HHHhhccCCCCc----------HHHHHHHhcCCCcchHHHHHHHHHH-hhhhcCchHHHHHhhhhcchHHHHHHhhcCCC
Q 000714 561 LNHLIHKSDTAT----------ISQLTALLTSDLPESKVYVLDALKS-MLSVVSFSDILREGSAANDAVETMIKILSSTK 629 (1335)
Q Consensus 561 L~~L~~~~~~~~----------i~~Lv~LL~s~~~~~k~~a~~aL~~-L~~~~~~~~~~~~~i~~~~~i~~Lv~LL~s~~ 629 (1335)
+..+....++.. +..+.+-|..+.+++...+..++.. +......+...+..+-....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666666554432 3334455666777777777777763 32222233334444555667899999887776
Q ss_pred H----HHHHHHHHHHHHHhcC
Q 000714 630 E----ETQAKSASALAGIFET 646 (1335)
Q Consensus 630 ~----~v~~~Aa~aL~nL~~~ 646 (1335)
+ .+...+-..|..+|.+
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred CcccchHHHHHHHHHHHHhcC
Confidence 6 8889999999999976
No 273
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=23.16 E-value=5.5e+02 Score=24.59 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=49.9
Q ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhccCChHhHHHHHhcCCHHHHHHhhccCChHHHHHHHHHH
Q 000714 453 EGIQLLISLLGLSSEQQQECSVALLCLLSNENDDSKWAITAAGGIPPLVQILESGSAKAKEDSASIL 519 (1335)
Q Consensus 453 g~I~~Lv~lL~~~~~~v~~~A~~aL~nLs~~~~~~r~~i~~~g~I~~Lv~LL~~~~~~v~~~Aa~aL 519 (1335)
.-+..|++-...+....++.+...|..+.. ++.....+.+-|+...|-++=..-++..+...-.++
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 446667777777777789999999999996 577888899999998877766555666666554444
No 274
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.41 E-value=3.2e+02 Score=28.24 Aligned_cols=42 Identities=26% Similarity=0.234 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhccCCCCcHHHHHHHhcCCCcchHHHHHHHHHHh
Q 000714 554 KEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALKSM 598 (1335)
Q Consensus 554 k~~Aa~aL~~L~~~~~~~~i~~Lv~LL~s~~~~~k~~a~~aL~~L 598 (1335)
+..|...|..|... -.+.+|+.+|.++++++...++.+|.+-
T Consensus 80 ~~~Av~LLGtM~GG---YNV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 80 PAEAVELLGTMLGG---YNVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp HHHHHHHHTTS-SS---TTHHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred HHHHHHHHhhccCC---CcHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 45566666555432 3578888888888888888888887753
No 275
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=7.9e+02 Score=31.93 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=68.4
Q ss_pred cchHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhH
Q 000714 615 NDAVETMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENRE 694 (1335)
Q Consensus 615 ~~~i~~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~ 694 (1335)
+=.++.++..++++.--++..++..+..+..+-++ ......+......++.+..-.+..+|+.|+-.+..++..+.+
T Consensus 459 ~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k 535 (970)
T COG5656 459 YFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEK 535 (970)
T ss_pred HHHHHHhhHhhcCcccchHHHHHHHHHHHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHH
Confidence 33467777778888888899999999988644333 333334556666777777778999999999999877644444
Q ss_pred HHHHhCCChHHHHHHhcCCCHHHH
Q 000714 695 VAAVARDALSPLVVLAGSPVLEVA 718 (1335)
Q Consensus 695 ~~i~~~g~i~~Lv~lL~~~~~~vk 718 (1335)
....-.+.++.|..+-+..+.++-
T Consensus 536 ~sahVp~tmekLLsLSn~feiD~L 559 (970)
T COG5656 536 FSAHVPETMEKLLSLSNTFEIDPL 559 (970)
T ss_pred HHhhhhHHHHHHHHhcccccchHH
Confidence 333334555666666666555543
No 276
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=21.63 E-value=3.5e+02 Score=28.99 Aligned_cols=70 Identities=21% Similarity=0.209 Sum_probs=54.3
Q ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHhhcCchhHHHHH--hcCCcHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 000714 65 QAVPVLVSLLRSGSLAVKIQAATVLGSLCKENELRVKVL--LGGCIPPLLGLLKSSSAEGQIAAAKTIYAVSQ 135 (1335)
Q Consensus 65 g~v~~Lv~lL~s~~~~vk~~aa~~L~~L~~~~~~~~~i~--~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~Ls~ 135 (1335)
..+|.+++=|+..+...+.-|......+... ....+++ ...-|+++-+.|.+.++++...++.+|..+..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~ 109 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVT 109 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888887644 2233333 34568888899999999999999999999955
No 277
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=21.63 E-value=2.7e+02 Score=28.13 Aligned_cols=71 Identities=14% Similarity=0.161 Sum_probs=53.5
Q ss_pred CHHHHHHHhccCChhHHHHHHHHHHHHhhc-CcchhhhHhccccHHHHHHHhcCCCCHH-HHHHHHHHHHhcc
Q 000714 197 GIDILVKLLTLGQSSTQAHVCFLLACMMEE-DVSVCSRVLAADATKQLLKLLGSGNEAS-VRAEAAGALKSLS 267 (1335)
Q Consensus 197 ~I~~Lv~lL~s~~~~v~~~aa~~L~~La~~-~~~~~~~i~~~g~i~~Lv~lL~s~~~~~-vr~~Aa~aL~nLs 267 (1335)
++..|-+-|.++++.++..|..+|-.++.+ ......++.+.+.+..|+.++.+..... ++..+...+..-+
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 455677788889999999999888766644 3345677788889999999998766534 7777777776554
No 278
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.52 E-value=1.2e+03 Score=26.47 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChHHHHH
Q 000714 629 KEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALSPLVV 708 (1335)
Q Consensus 629 ~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~~Lv~ 708 (1335)
.++....++..|.+-+... .+...+..|+.+|.++.+..+.+....+..++....-. + -...+.+.+|.+
T Consensus 166 ~~dfl~~v~~~l~~~f~P~-------~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~-~--~~~~dlispllr 235 (262)
T PF14225_consen 166 KDDFLSQVVSYLREAFFPD-------HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR-S--PHGADLISPLLR 235 (262)
T ss_pred HHHHHHHHHHHHHHHhCch-------hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC-C--CcchHHHHHHHH
Confidence 4556667777777655331 13346777899999999999999999998888654322 2 156778999999
Q ss_pred HhcCCC
Q 000714 709 LAGSPV 714 (1335)
Q Consensus 709 lL~~~~ 714 (1335)
++..+.
T Consensus 236 lL~t~~ 241 (262)
T PF14225_consen 236 LLQTDL 241 (262)
T ss_pred HhCCcc
Confidence 997654
No 279
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=21.39 E-value=1.2e+03 Score=28.70 Aligned_cols=245 Identities=15% Similarity=0.100 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHhhhhcCchHHHHHhhhhcchHH-HHHHhhcCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHH
Q 000714 587 SKVYVLDALKSMLSVVSFSDILREGSAANDAVE-TMIKILSSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMK 665 (1335)
Q Consensus 587 ~k~~a~~aL~~L~~~~~~~~~~~~~i~~~~~i~-~Lv~LL~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~ 665 (1335)
.|..++.+||.+++....... ...+. .|..+|++.+...|..++.+|.+-+...........-......|..
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~-------~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSL-------QEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHhcccchH-------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 455666666666554322211 11244 5888999999999999999999888764332111001123456666
Q ss_pred hhhcCChhHHHHHHHHHHHHHccChhhhHHHHHhCCChH-----HHHHHhc--------CCCHHHHHHHHHHHHHHhCCc
Q 000714 666 LLDVGSECILVEASRCLAAIFLSVRENREVAAVARDALS-----PLVVLAG--------SPVLEVAEQATCALANLILDS 732 (1335)
Q Consensus 666 LL~~~~~~v~~~aa~aL~~L~~~~~~~~~~~i~~~g~i~-----~Lv~lL~--------~~~~~vk~~Aa~aL~nL~~~~ 732 (1335)
.|.......-.+....+..+-.....--. .+.+.|.++ .|-.... ..+.+..+..+....
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~-~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~------ 248 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLA-TFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDF------ 248 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHH------
Confidence 66655544455555555444432222222 255555522 2211111 112222222222110
Q ss_pred hHHHHHHHCCChHHHHHHhhcCC-------hhhHHHHHHHHHHHhhcCCCchhHHHHHHhhccHHHHHHhhhcCCCCCCc
Q 000714 733 EVSEKAIAEEIILPATRVLCEGT-------ISGKTLAAAAIARLLHSRKIDYTITDCVNRAGTVLALVSFLESASGSVAT 805 (1335)
Q Consensus 733 ~~~~~~~~~g~v~~L~~ll~~~~-------~~~k~~A~~aL~~Ll~~~~~~~~~~~~i~~~g~l~~Lv~~~~~~~~~~~~ 805 (1335)
+.+...+..++ .+.++..+..-..-.+. .......-..+....+++.+-.=+. +-
T Consensus 249 ------------~~l~~~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~---~~~~~~~~V~Aa~A~A~v~l~~lP~---KL 310 (441)
T PF12054_consen 249 ------------EKLKKSLSPSQKLSALQALEDRRQRLQAAIEEAKE---VQTSRDVRVLAAAASALVALGGLPK---KL 310 (441)
T ss_pred ------------HHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCC---Cc
Confidence 01111111110 01111111111111111 1111222233333444444322221 12
Q ss_pred hhHHHHHHHHHHhCCCCCCCCCcchhhhcccccchhhhhhhhcCChhhHHHHHH-HHHHhccCCCC
Q 000714 806 SEALDALAILSRSGGASGHVKPAWQVLAEFPKSITPIVSSIADATPLLQDKAIE-ILSRLCRDQPA 870 (1335)
Q Consensus 806 ~~al~~L~~l~~~~~~~~~~~~~~~~~~e~~~~l~~l~~~i~~~~~~~~~~~~~-iL~~l~~~~~~ 870 (1335)
.-.+..|..-.+...+ + .+|-.++.+++.|.+....+.|--.+|+++ +-..||.|..+
T Consensus 311 nPiIrpLMdSIK~Een-----~--~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~se 369 (441)
T PF12054_consen 311 NPIIRPLMDSIKREEN-----E--LLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSE 369 (441)
T ss_pred cHHHHHHHHHhhcccc-----H--HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCccc
Confidence 3345555545555555 5 788888888988877777777777888877 45588887766
No 280
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=21.30 E-value=7.2e+02 Score=32.11 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=65.1
Q ss_pred cchHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhhHHHHHhcCChHHHHHhhhcCChhHHHHHHHHHHHHHccChhhh
Q 000714 615 NDAVETMIKIL-SSTKEETQAKSASALAGIFETRKDLRESSIAVKTLWSVMKLLDVGSECILVEASRCLAAIFLSVRENR 693 (1335)
Q Consensus 615 ~~~i~~Lv~LL-~s~~~~v~~~Aa~aL~nL~~~~~~~~~~l~~~g~v~~Lv~LL~~~~~~v~~~aa~aL~~L~~~~~~~~ 693 (1335)
...+|.+-.+. .+.+..++.+++-|++.+. +..+...-...+.++.+..+..++.+.........++..-...-
T Consensus 427 ~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g- 501 (700)
T KOG2137|consen 427 QAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG- 501 (700)
T ss_pred HHHHHHhhcchhcccchHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence 34577777764 4567889999999999998 33333333345666666667778887777777766666433221
Q ss_pred HHHHHhCCChHHHHHHhcCCCHHHH
Q 000714 694 EVAAVARDALSPLVVLAGSPVLEVA 718 (1335)
Q Consensus 694 ~~~i~~~g~i~~Lv~lL~~~~~~vk 718 (1335)
+.+..+.++|.++-+...+.-...
T Consensus 502 -~ev~~~~VlPlli~ls~~~~L~~~ 525 (700)
T KOG2137|consen 502 -VEVMAENVLPLLIPLSVAPSLNGE 525 (700)
T ss_pred -eeeehhhhhhhhhhhhhcccccHH
Confidence 236667788888888777665544
No 281
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.54 E-value=1.3e+03 Score=26.21 Aligned_cols=108 Identities=16% Similarity=0.145 Sum_probs=59.9
Q ss_pred CCcHHHHHHHhcc-----------CCHHHHHHHHHHHHHhhcCchhHHHHHhcCCcHHHHHhhcCCCHHHHHHHHHHHHH
Q 000714 64 SQAVPVLVSLLRS-----------GSLAVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQIAAAKTIYA 132 (1335)
Q Consensus 64 ~g~v~~Lv~lL~s-----------~~~~vk~~aa~~L~~L~~~~~~~~~i~~~g~I~~Lv~lL~s~~~e~~~~Aa~aL~~ 132 (1335)
.-.+|.|+.+|.. ++...-.++...|+.+- ...+.|+++++++.++.-.- ..+.-
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r----------e~~A~~~li~l~~~~~~~~~----~l~GD 95 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR----------EERALPPLIRLFSQDDDFLE----DLFGD 95 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh----------hhhhHHHHHHHHcCCcchHH----HHHcc
Confidence 3456777777653 12223467777777662 23589999999986553110 00111
Q ss_pred hhccCCCCccccch--hhhcCChHHHHHHhhcCCCChhhHHHHHHHHHHHhhcCChhhHHH
Q 000714 133 VSQGGAKDYVGSKI--FSTEGVVPVLWEQLKNGLKSGNVVDNLLTGALRNLSTSTEGFWAA 191 (1335)
Q Consensus 133 Ls~~~~~d~~~~~~--l~~~G~Ip~Lv~LL~~~~~~~~~v~~~a~~aL~nLs~~~~~~~~~ 191 (1335)
... .+.+ .+ .+-.|-+..|-+++.++.. +..++..+..+|..+....+..+..
T Consensus 96 ~~t----E~l~-~ilasv~~G~~~~L~~li~~~~~-~~yvR~aa~~aL~~l~~~~~~~Re~ 150 (249)
T PF06685_consen 96 FIT----EDLP-RILASVGDGDIEPLKELIEDPDA-DEYVRMAAISALAFLVHEGPISREE 150 (249)
T ss_pred hhH----hHHH-HHHHHHhCCCHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 011 1111 11 1234668888888887643 4457777777887777555444443
Done!