BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000717
(1334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 120 bits (300), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 116/227 (51%), Gaps = 11/227 (4%)
Query: 670 AAKTTALQLEAEEK-DDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK 728
A +T L+L K +D+N +L ILV+GK GVGKS+T+NSI GE SI F+
Sbjct: 20 ATQTKLLELLGNLKQEDVN-SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV 78
Query: 729 EIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRD 788
+ + G + +IDTPGL G +N L IK F D++LYVDRLD+ D
Sbjct: 79 MVSRSRAGFTLNIIDTPGLIEGGY---INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVD 135
Query: 789 LNDLPLLRSITNALGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSIG 848
D + ++IT++ G IW AIV LTH Y+ F ++RS + Q +
Sbjct: 136 NLDKLVAKAITDSFGKGIWNKAIVALTH-----AQFSPPDGLPYDEFFSKRSEALLQVVR 190
Query: 849 QAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
+ S + PV L+EN C KN +KVLPNG W P L+
Sbjct: 191 SGASLKKDAQASDI-PVVLIENSGRCNKNDSDEKVLPNGIAWIPHLV 236
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 115/227 (50%), Gaps = 11/227 (4%)
Query: 670 AAKTTALQLEAEEK-DDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK 728
A +T L+L K +D+N +L ILV GK GVGKS+T+NSI GE SI F+
Sbjct: 20 ATQTKLLELLGNLKQEDVN-SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPV 78
Query: 729 EIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRD 788
+ + G + +IDTPGL G +N L IK F D++LYVDRLD+ D
Sbjct: 79 XVSRSRAGFTLNIIDTPGLIEGGY---INDXALNIIKSFLLDKTIDVLLYVDRLDAYRVD 135
Query: 789 LNDLPLLRSITNALGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSIG 848
D + ++IT++ G IW AIV LTH Y+ F ++RS + Q +
Sbjct: 136 NLDKLVAKAITDSFGKGIWNKAIVALTH-----AQFSPPDGLPYDEFFSKRSEALLQVVR 190
Query: 849 QAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
+ S + PV L+EN C KN +KVLPNG W P L+
Sbjct: 191 SGASLKKDAQASDI-PVVLIENSGRCNKNDSDEKVLPNGIAWIPHLV 236
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 13/216 (6%)
Query: 682 EKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRV 741
++ D+N ++ +LVLGK GVGKS+T+NS+ GE+ + F+ + T+ G I +
Sbjct: 30 KQKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI 88
Query: 742 IDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA 801
IDTPGL +G VN + L IK F D++LYVDRLD D D ++ +IT
Sbjct: 89 IDTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQT 145
Query: 802 LGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSI--GQAVGDLRLMNP 859
G +IW ++ LTH YE F ++RS + ++I G + +
Sbjct: 146 FGKEIWCKTLLVLTH-----AQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDS 200
Query: 860 SLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
++ V EN C KN +K LPNG+ W P L+
Sbjct: 201 AI--AVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 13/216 (6%)
Query: 682 EKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRV 741
++ D+N ++ +LVLGK GVGKS+T+NS+ GE+ + F+ + T+ G I +
Sbjct: 29 KQKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI 87
Query: 742 IDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA 801
IDTPGL +G VN + L IK F D++LYVDRLD D D ++ +IT
Sbjct: 88 IDTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQT 144
Query: 802 LGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSI--GQAVGDLRLMNP 859
G +IW ++ LTH YE F ++RS + ++I G + +
Sbjct: 145 FGKEIWCKTLLVLTH-----AQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDS 199
Query: 860 SLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
++ V EN C KN +K LPNG+ W P L+
Sbjct: 200 AI--AVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 233
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 111 bits (278), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 13/216 (6%)
Query: 682 EKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRV 741
++ D+N ++ +LVLGK GVGKS+T+NS+ GE+ + F+ + T+ G I +
Sbjct: 30 KQKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI 88
Query: 742 IDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA 801
IDTPGL +G VN + L IK F D++LYVDRLD D D ++ +IT
Sbjct: 89 IDTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQT 145
Query: 802 LGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSI--GQAVGDLRLMNP 859
G +IW ++ LTH YE F ++RS + ++I G + +
Sbjct: 146 FGKEIWCKTLLVLTH-----AQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDS 200
Query: 860 SLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
++ V EN C KN +K LPNG+ W P L+
Sbjct: 201 AI--AVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 13/216 (6%)
Query: 682 EKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRV 741
++ D+N ++ +LVLGK GVGKS+T+NS+ GE+ + F+ + T+ G I +
Sbjct: 30 KQKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI 88
Query: 742 IDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA 801
IDTPGL +G VN + L IK F D++LYVDRLD D D ++ +IT
Sbjct: 89 IDTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQT 145
Query: 802 LGTQIWRSAIVTLTHXXXXXXXXXXXXXXXYEIFVAQRSHVVQQSI--GQAVGDLRLMNP 859
G +IW ++ LTH YE F ++RS + ++I G + +
Sbjct: 146 FGKEIWCKTLLVLTH-----AQFSPPDELSYETFSSKRSDELLKTIRAGSKMRKQEFEDS 200
Query: 860 SLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLL 895
++ V EN C KN +K LPNG+ W P L+
Sbjct: 201 AI--AVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 30/160 (18%)
Query: 648 GQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATIN 707
G+V+ RL I + T +L DA LN L ++++GK VGKS +N
Sbjct: 214 GEVVTRLERIKEKLTEELKKADAGIL------------LNRGLRMVIVGKPNVGKSTLLN 261
Query: 708 SIFGEEKTSIHAFEPGTTS---VKEIVGTVDGVKIRVIDTPGLKSSG---VEQGVNRKVL 761
+ E++ + PGTT +EIV + G+ R++DT G++S VE+ + L
Sbjct: 262 RLLNEDRAIVTDI-PGTTRDVISEEIV--IRGILFRIVDTAGVRSETNDLVERLGIERTL 318
Query: 762 ASIKKFTKKCAPDIVLYVDRLD-SQTRDLNDLPLLRSITN 800
I+K DIVL+V LD S D D +L I N
Sbjct: 319 QEIEK------ADIVLFV--LDASSPLDEEDRKILERIKN 350
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 19/113 (16%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVDGVKIRVIDTPGL 747
++ ++ GK GKS +N++ G+E+ +I + PGTT ++E D R+ DT GL
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECF-IHDKTMFRLTDTAGL 291
Query: 748 KSSGVE---QGVNRKVLASIKKFTKKCAPDIVLYV-----DRLDSQTRDLNDL 792
+ +G E +G+ R + K D++LY+ +RLD + ++ +L
Sbjct: 292 REAGEEIEHEGIRRSRM-------KMAEADLILYLLDLGTERLDDELTEIREL 337
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 688 FTLNILVLGKTGVGKSATINSIFGEE---KTSIHAFE---PGTTSVKEIVGTVD--GVKI 739
F NI+V+G++G+GKS +N++F + K S E P T +K I ++ GVK+
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM 60
Query: 740 R--VIDTPGL 747
+ VIDTPG
Sbjct: 61 KLTVIDTPGF 70
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 683 KDDLNF----TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT----V 734
+++L F T ++++G+TG GKSAT NSI G+ + G TSV T
Sbjct: 11 RENLYFQGESTRRLILVGRTGAGKSATGNSILGQRR---FFSRLGATSVTRACTTGSRRW 67
Query: 735 DGVKIRVIDTPGLKSSGVEQ 754
D + V+DTP + SS V +
Sbjct: 68 DKCHVEVVDTPDIFSSQVSK 87
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 678 LEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVD 735
L+ E K ++ + + ++G+ VGKS N+I +E+ + PGTT V + V +D
Sbjct: 169 LDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEV-FID 226
Query: 736 GVKIRVIDTPGLKSSG------VEQGVNRKVLASIKK 766
G K +DT GL+ VE+ N +V+ SI+K
Sbjct: 227 GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK 263
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-------VKI 739
N L I+++GKTG GKSAT NSI G + F G T+ K I + ++
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGRK-----VFHSG-TAAKSITKKCEKRSSSWKETEL 80
Query: 740 RVIDTPGL 747
V+DTPG+
Sbjct: 81 VVVDTPGI 88
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG------TTSVKEIVGTVDGVKIRVID 743
L I+++GKTG GKSA NSI ++ AFE T + + G+ +I +ID
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 744 TPGLKSSGVEQGVNRKVLASIKKFTKKC------APDIVLYVDRLDSQTRDLNDLPLLRS 797
TP + S + ++ K ++C P ++L V +L T D +
Sbjct: 78 TPDMFSW-------KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQR 128
Query: 798 ITNALGTQIWRSAIVTLTH 816
+ G IV TH
Sbjct: 129 VKEIFGEDAMGHTIVLFTH 147
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 688 FTLNILVLGKTGVGKSATINSIF----GEEKTSIHAFEPGTTSVKEIVGTVD----GVKI 739
F ++V+G++G+GKS INS+F E+ A E +V+ TV+ GVK+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 740 R--VIDTPG 746
R V+DTPG
Sbjct: 96 RLTVVDTPG 104
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 24/138 (17%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG------TTSVKEIVGTVDGVKIRVID 743
L I+++GKTG GKSA NSI ++ AFE T + + G+ +I +ID
Sbjct: 3 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 57
Query: 744 TPGLKS-----SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSI 798
TP + S + + V R L S P ++L V +L T D + +
Sbjct: 58 TPDMFSWKDHCEALYKEVQRCYLLSAP------GPHVLLLVTQLGRYTS--QDQQAAQRV 109
Query: 799 TNALGTQIWRSAIVTLTH 816
G IV TH
Sbjct: 110 KEIFGEDAMGHTIVLFTH 127
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 688 FTLNILVLGKTGVGKSATINSIF----GEEKTSIHAFEPGTTSVKEIVGTVD----GVKI 739
F ++V+G++G+GKS INS+F E+ A E +V+ TV+ GVK+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 740 R--VIDTPG 746
R V+DTPG
Sbjct: 64 RLTVVDTPG 72
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 35.4 bits (80), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG------TTSVKEIVGTVDGVKIRVID 743
L I+++GKTG GKSA NSI ++ AFE T + + G+ +I +ID
Sbjct: 6 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 60
Query: 744 TPGLKSSGVEQGVNRKVLASIKKFTKKC------APDIVLYVDRLDSQTRDLNDLPLLRS 797
TP + S + ++ K ++C P ++L V +L T D +
Sbjct: 61 TPDMFSW-------KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQR 111
Query: 798 ITNALGTQIWRSAIVTLTH 816
+ G IV TH
Sbjct: 112 VKEIFGEDAMGHTIVLFTH 130
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 34.7 bits (78), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 26/139 (18%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG------TTSVKEIVGTVDGVKIRVID 743
L I+++GKTG GKSA NSI ++ AFE T + + G+ +I +ID
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 744 TPGLKSSGVEQGVNRKVLASIKKFTKKC------APDIVLYVDRLDSQTRDLNDLPLLRS 797
TP S + ++ K ++C P ++L V +L T D +
Sbjct: 78 TPDXFSW-------KDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTS--QDQQAAQR 128
Query: 798 ITNALGTQIWRSAIVTLTH 816
+ G IV TH
Sbjct: 129 VKEIFGEDAXGHTIVLFTH 147
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 34.3 bits (77), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 688 FTLNILVLGKTGVGKSATINSIF----GEEKTSIHAFEPGTTSVKEIVGTVD----GVKI 739
F + V+G++G+GKS INS+F E+ A E +V+ TV+ GVK+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 740 R--VIDTPG 746
R V+DTPG
Sbjct: 77 RLTVVDTPG 85
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 688 FTLNILVLGKTGVGKSATINSIF----GEEKTSIHAFEPGTTSVKEIVGTVD----GVKI 739
F + V+G++G+GKS INS+F E+ A E +V+ TV+ GVK+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 740 R--VIDTPG 746
R V+DTPG
Sbjct: 96 RLTVVDTPG 104
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 33.9 bits (76), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 696 GKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQG 755
G++ GKS+ +N++ ++ + + PG T + + DG R++D PG + V +
Sbjct: 33 GRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK--RLVDLPGYGYAEVPEE 90
Query: 756 VNRKVLASIKKFTKK 770
+ RK ++ ++ +K
Sbjct: 91 MKRKWQRALGEYLEK 105
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 33.5 bits (75), Expect = 0.79, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKS 749
+ +++ G+ GKS+ +N++ G E + T V +DG+ + +IDT GL+
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 750 SGVE 753
+ E
Sbjct: 68 ASDE 71
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To Subtilisin
Length = 671
Score = 33.5 bits (75), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 1044 GEDVDQENGSSAAVP-VPLPDMVLPQSFDGDNPAYRYRFLEPNSQFLARPVLDGHGWDHD 1102
G D G+S A P V VL Q F P ++ R L N+ F +G+GWDHD
Sbjct: 371 GGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKP-WQIRKLLENTAF----DFNGNGWDHD 425
Query: 1103 CGYDGVNVEHSL 1114
GY V ++ +L
Sbjct: 426 TGYGLVKLDAAL 437
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 32/63 (50%)
Query: 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLK 748
+ ++G+ VGKS+ +N++ GEE+ + T + T + + ++DT G++
Sbjct: 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMR 254
Query: 749 SSG 751
G
Sbjct: 255 KKG 257
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKS 749
+ +++ G+ GKS+ +N++ G E + T V +DG+ + +IDT GL+
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 750 S 750
+
Sbjct: 65 A 65
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 15/72 (20%)
Query: 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE-PGTT-SVKEIVGTVD--------GV 737
F ++V+G++G+GKS INS+F T +++ E PG + +K+ V GV
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFL---TDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGV 86
Query: 738 K--IRVIDTPGL 747
+ + ++DTPG
Sbjct: 87 QLLLTIVDTPGF 98
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 684 DDLNFTLNILVLGKTGVGKSATINSI----FGEEKTSIHAFEPGTTSVKEIVGTVDGVKI 739
+D NF ++++G++GVGK+ ++ F + + E T +V ++GT VK
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV--MLGTA-AVKA 61
Query: 740 RVIDTPGLK 748
++ DT GL+
Sbjct: 62 QIWDTAGLE 70
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 684 DDLNFTLNILVLGKTGVGKSATINSI----FGEEKTSIHAFEPGTTSVKEIVGTVDGVKI 739
+D NF ++++G++GVGK+ ++ F + + E T +V ++GT VK
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTV--MLGTA-AVKA 76
Query: 740 RVIDTPGLK 748
++ DT GL+
Sbjct: 77 QIWDTAGLE 85
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK--EIVGTVDGVKIRVIDTPGL 747
+ ++GK VGKS +N++ G K SI + + GTT ++ + + +I +DTPG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLG-TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 68
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK--EIVGTVDGVKIRVIDTPGL 747
+ ++GK VGKS +N++ G K SI + + GTT ++ + + +I +DTPG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLG-TKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGI 69
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSS 750
+++ G+ GKS+ +N++ G E + T V +DG + +IDT GL+ +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREA 65
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDGVKIRVIDTPGLKS 749
++++G+ VGKS+ N + ++++++ A PG T +KE V D + ++DT GL S
Sbjct: 3 KVVIVGRPNVGKSSLFNRLL-KKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 684 DDLNFTLNILVLGKTGVGKSATINSI----FGEEKTSIHAFEPGTTSVKEIVGTVDG--V 737
D+ ++ ++++G +GVGKS ++ F E S E T S++ VDG +
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-----VDGKTI 60
Query: 738 KIRVIDTPGLK 748
K ++ DT GL+
Sbjct: 61 KAQIWDTAGLE 71
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 684 DDLNFTLNILVLGKTGVGKSATINSI----FGEEKTSIHAFEPGTTSVKEIVGTVDG--V 737
D+ ++ ++++G +GVGKS ++ F E S E T S++ VDG +
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-----VDGKTI 57
Query: 738 KIRVIDTPGLK 748
K ++ DT GL+
Sbjct: 58 KAQIWDTAGLE 68
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 688 FTLNILVLGKTGVGKSATINSIF 710
F ++V+G++G+GKS INS+F
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLF 29
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 688 FTLNILVLGKTGVGKSATINSIF 710
F ++V+G++G+GKS INS+F
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLF 24
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLK 748
+ ++G+ VGKS+ +N+ GEE+ + T + T + + ++DT G +
Sbjct: 175 VIQFCLIGRPNVGKSSLVNAXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXR 234
Query: 749 SSG 751
G
Sbjct: 235 KKG 237
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 30.4 bits (67), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 684 DDLNFTLNILVLGKTGVGKSATINSI----FGEEKTSIHAFEPGTTSVKEIVGTVDG--V 737
D+ ++ ++++G +GVGKS ++ F E S E T S++ VDG +
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ-----VDGKTI 78
Query: 738 KIRVIDTPGLK 748
K ++ DT GL+
Sbjct: 79 KAQIWDTAGLE 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,085,422
Number of Sequences: 62578
Number of extensions: 1194198
Number of successful extensions: 2451
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 61
length of query: 1334
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1224
effective length of database: 8,089,757
effective search space: 9901862568
effective search space used: 9901862568
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)