Query 000717
Match_columns 1334
No_of_seqs 585 out of 3383
Neff 3.9
Searched_HMMs 46136
Date Mon Apr 1 22:37:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 5E-224 1E-228 1941.7 67.1 725 609-1334 38-763 (763)
2 PF11886 DUF3406: Domain of un 100.0 5E-127 1E-131 1023.2 26.0 272 1053-1324 2-273 (273)
3 cd01853 Toc34_like Toc34-like 100.0 1.2E-37 2.7E-42 338.1 23.8 240 668-912 10-249 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 1.5E-35 3.2E-40 330.3 23.8 248 687-948 36-288 (313)
5 COG1160 Predicted GTPases [Gen 100.0 4.7E-34 1E-38 327.8 17.0 237 536-823 67-305 (444)
6 PF04548 AIG1: AIG1 family; I 100.0 3.9E-28 8.5E-33 256.4 13.1 195 690-912 1-206 (212)
7 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 1E-25 2.2E-30 233.3 11.6 160 690-861 1-163 (196)
8 TIGR03594 GTPase_EngA ribosome 99.9 3E-22 6.5E-27 229.3 18.0 218 565-820 78-296 (429)
9 PRK00093 GTP-binding protein D 99.9 2.5E-21 5.3E-26 222.8 19.5 218 565-821 80-298 (435)
10 PRK03003 GTP-binding protein D 99.9 9.6E-21 2.1E-25 221.9 18.0 218 565-821 117-336 (472)
11 PRK09518 bifunctional cytidyla 99.8 3E-20 6.5E-25 227.6 19.0 234 537-821 339-575 (712)
12 PF02421 FeoB_N: Ferrous iron 99.6 9.1E-16 2E-20 158.0 10.5 122 690-824 1-122 (156)
13 COG1159 Era GTPase [General fu 99.6 1.7E-15 3.7E-20 168.4 13.1 124 689-822 6-129 (298)
14 COG1084 Predicted GTPase [Gene 99.6 3.7E-15 8.1E-20 167.3 13.8 188 620-822 102-295 (346)
15 PF01926 MMR_HSR1: 50S ribosom 99.6 4.7E-15 1E-19 141.2 12.5 116 691-816 1-116 (116)
16 COG0486 ThdF Predicted GTPase 99.6 4.3E-15 9.4E-20 172.8 14.2 128 684-822 212-339 (454)
17 cd01858 NGP_1 NGP-1. Autoanti 99.6 4.1E-15 9E-20 149.6 11.3 151 564-747 7-157 (157)
18 COG1160 Predicted GTPases [Gen 99.6 8.2E-15 1.8E-19 170.1 12.6 123 690-821 4-126 (444)
19 TIGR00436 era GTP-binding prot 99.5 1.1E-13 2.3E-18 151.6 14.1 120 691-821 2-121 (270)
20 cd01849 YlqF_related_GTPase Yl 99.5 9.9E-14 2.1E-18 139.6 12.3 152 567-747 1-155 (155)
21 PRK09563 rbgA GTPase YlqF; Rev 99.5 3.3E-13 7.2E-18 149.7 16.3 168 541-753 13-182 (287)
22 TIGR03596 GTPase_YlqF ribosome 99.5 3.8E-13 8.2E-18 148.4 15.9 168 541-753 10-179 (276)
23 cd04178 Nucleostemin_like Nucl 99.5 1.3E-13 2.8E-18 143.4 10.2 158 567-747 1-172 (172)
24 KOG1191 Mitochondrial GTPase [ 99.5 2.7E-13 5.9E-18 158.1 13.7 136 683-822 262-404 (531)
25 TIGR03598 GTPase_YsxC ribosome 99.5 1E-12 2.2E-17 134.4 16.2 127 687-822 16-144 (179)
26 cd01856 YlqF YlqF. Proteins o 99.5 7.1E-13 1.5E-17 135.7 14.5 163 541-748 8-171 (171)
27 COG3596 Predicted GTPase [Gene 99.5 3.7E-13 7.9E-18 148.9 13.2 161 687-856 37-202 (296)
28 COG0218 Predicted GTPase [Gene 99.5 5.4E-13 1.2E-17 142.2 13.6 126 688-822 23-150 (200)
29 cd01850 CDC_Septin CDC/Septin. 99.5 1.3E-12 2.8E-17 144.8 17.3 177 687-880 2-211 (276)
30 cd04164 trmE TrmE (MnmE, ThdF, 99.4 1.1E-12 2.3E-17 127.0 14.0 121 690-822 2-122 (157)
31 cd01894 EngA1 EngA1 subfamily. 99.4 8E-13 1.7E-17 128.2 13.1 120 693-822 1-120 (157)
32 cd01895 EngA2 EngA2 subfamily. 99.4 1.3E-12 2.8E-17 127.9 14.0 126 689-822 2-128 (174)
33 cd01857 HSR1_MMR1 HSR1/MMR1. 99.4 6.1E-13 1.3E-17 132.2 11.1 130 565-749 11-140 (141)
34 PRK00089 era GTPase Era; Revie 99.4 1.1E-12 2.5E-17 144.2 14.2 123 689-821 5-127 (292)
35 PF00735 Septin: Septin; Inte 99.4 7.2E-13 1.6E-17 147.6 12.5 184 688-888 3-218 (281)
36 cd01855 YqeH YqeH. YqeH is an 99.4 5.5E-13 1.2E-17 137.9 10.4 147 565-747 34-190 (190)
37 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-12 2.3E-17 151.1 13.8 122 691-822 1-122 (429)
38 cd04163 Era Era subfamily. Er 99.4 4.1E-12 8.8E-17 122.6 14.7 123 689-821 3-125 (168)
39 KOG1547 Septin CDC10 and relat 99.4 1.1E-11 2.3E-16 135.0 17.1 200 661-888 28-259 (336)
40 cd01898 Obg Obg subfamily. Th 99.4 1.9E-12 4.1E-17 128.4 10.1 126 691-822 2-129 (170)
41 PRK15494 era GTPase Era; Provi 99.4 5E-12 1.1E-16 143.7 14.1 123 688-820 51-173 (339)
42 TIGR00450 mnmE_trmE_thdF tRNA 99.3 7.9E-12 1.7E-16 147.0 15.0 126 685-821 199-324 (442)
43 cd01859 MJ1464 MJ1464. This f 99.3 3.5E-12 7.7E-17 127.7 10.3 146 564-747 11-156 (156)
44 PRK00093 GTP-binding protein D 99.3 8.7E-12 1.9E-16 144.3 14.6 121 690-820 2-122 (435)
45 PRK12289 GTPase RsgA; Reviewed 99.3 3E-12 6.5E-17 146.8 8.8 173 565-781 89-272 (352)
46 PRK12298 obgE GTPase CgtA; Rev 99.3 7.8E-12 1.7E-16 145.0 12.3 126 690-821 160-289 (390)
47 PRK03003 GTP-binding protein D 99.3 1.5E-11 3.3E-16 145.0 14.8 123 688-820 37-159 (472)
48 PRK05291 trmE tRNA modificatio 99.3 1.3E-11 2.9E-16 145.1 13.8 125 686-822 212-336 (449)
49 cd01879 FeoB Ferrous iron tran 99.3 1.2E-11 2.7E-16 120.6 10.9 116 694-822 1-116 (158)
50 cd01897 NOG NOG1 is a nucleola 99.3 3.1E-11 6.7E-16 119.9 13.4 126 690-822 1-128 (168)
51 COG5019 CDC3 Septin family pro 99.3 2.5E-11 5.5E-16 138.5 14.4 174 687-877 21-228 (373)
52 TIGR03156 GTP_HflX GTP-binding 99.3 3.8E-11 8.3E-16 137.5 16.0 126 688-821 188-315 (351)
53 PRK00454 engB GTP-binding prot 99.3 3.9E-11 8.5E-16 122.5 14.3 126 688-822 23-150 (196)
54 cd01881 Obg_like The Obg-like 99.3 1.1E-11 2.3E-16 123.2 8.3 123 694-822 1-135 (176)
55 PRK09518 bifunctional cytidyla 99.3 4.4E-11 9.4E-16 147.7 15.1 121 690-820 276-396 (712)
56 PRK12299 obgE GTPase CgtA; Rev 99.3 3.1E-11 6.8E-16 137.5 12.7 126 689-822 158-286 (335)
57 TIGR03597 GTPase_YqeH ribosome 99.3 3E-11 6.6E-16 138.5 12.7 181 565-784 63-249 (360)
58 KOG2655 Septin family protein 99.2 7.8E-11 1.7E-15 135.1 15.1 173 687-876 19-222 (366)
59 KOG1490 GTP-binding protein CR 99.2 5E-11 1.1E-15 139.5 13.3 129 687-824 166-298 (620)
60 KOG1423 Ras-like GTPase ERA [C 99.2 4.8E-11 1E-15 133.5 11.8 129 687-822 70-200 (379)
61 PRK12288 GTPase RsgA; Reviewed 99.2 3.2E-11 7E-16 138.1 10.7 145 600-782 150-305 (347)
62 cd04104 p47_IIGP_like p47 (47- 99.2 1E-10 2.2E-15 122.6 13.3 118 689-822 1-122 (197)
63 cd04171 SelB SelB subfamily. 99.2 1.3E-10 2.8E-15 113.9 13.0 115 690-821 1-118 (164)
64 cd01878 HflX HflX subfamily. 99.2 1.1E-10 2.4E-15 121.1 13.2 127 688-822 40-168 (204)
65 TIGR00157 ribosome small subun 99.2 2.1E-11 4.6E-16 133.0 7.6 174 565-782 36-219 (245)
66 PRK13796 GTPase YqeH; Provisio 99.2 7.2E-11 1.6E-15 135.7 12.1 150 565-750 69-223 (365)
67 TIGR02729 Obg_CgtA Obg family 99.2 7.4E-11 1.6E-15 134.1 12.0 126 689-821 157-287 (329)
68 PRK12296 obgE GTPase CgtA; Rev 99.2 1.2E-10 2.7E-15 138.7 14.2 129 686-820 156-297 (500)
69 PRK11058 GTPase HflX; Provisio 99.2 1.1E-10 2.3E-15 137.0 12.9 125 690-821 198-323 (426)
70 cd00880 Era_like Era (E. coli 99.2 1.8E-10 3.9E-15 109.1 12.1 118 694-822 1-119 (163)
71 PRK12297 obgE GTPase CgtA; Rev 99.2 1E-10 2.3E-15 137.1 12.6 124 690-819 159-286 (424)
72 cd01876 YihA_EngB The YihA (En 99.2 4.5E-10 9.7E-15 109.1 14.9 122 692-822 2-125 (170)
73 COG1161 Predicted GTPases [Gen 99.2 1.2E-10 2.5E-15 132.2 12.3 159 564-753 33-193 (322)
74 cd00881 GTP_translation_factor 99.2 3.9E-10 8.5E-15 113.0 13.5 114 691-822 1-129 (189)
75 PRK04213 GTP-binding protein; 99.2 3.2E-10 7E-15 117.2 13.1 124 688-821 8-144 (201)
76 PRK09554 feoB ferrous iron tra 99.2 2.2E-10 4.8E-15 142.7 14.0 122 689-822 3-127 (772)
77 cd04166 CysN_ATPS CysN_ATPS su 99.1 2.8E-10 6.1E-15 120.2 12.6 114 691-821 1-144 (208)
78 cd01884 EF_Tu EF-Tu subfamily. 99.1 6.7E-10 1.5E-14 117.6 14.6 115 689-821 2-132 (195)
79 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 6.5E-10 1.4E-14 110.0 12.3 112 691-821 2-116 (168)
80 cd01861 Rab6 Rab6 subfamily. 99.1 6.7E-10 1.5E-14 109.4 12.0 117 690-821 1-119 (161)
81 cd01889 SelB_euk SelB subfamil 99.1 1.3E-09 2.8E-14 112.8 14.0 114 690-821 1-134 (192)
82 PRK00098 GTPase RsgA; Reviewed 99.1 3.6E-10 7.8E-15 126.6 10.4 175 564-781 79-263 (298)
83 COG0370 FeoB Fe2+ transport sy 99.1 6.9E-10 1.5E-14 134.5 13.0 123 689-824 3-125 (653)
84 cd04160 Arfrp1 Arfrp1 subfamil 99.1 1E-09 2.2E-14 109.0 12.0 116 691-821 1-121 (167)
85 cd01854 YjeQ_engC YjeQ/EngC. 99.1 4E-10 8.8E-15 125.6 10.1 178 560-781 73-260 (287)
86 cd00154 Rab Rab family. Rab G 99.1 1E-09 2.2E-14 105.4 11.6 116 690-820 1-118 (159)
87 cd04119 RJL RJL (RabJ-Like) su 99.1 1.7E-09 3.6E-14 106.3 12.6 118 690-821 1-124 (168)
88 CHL00071 tufA elongation facto 99.0 1.6E-09 3.5E-14 126.1 13.8 117 687-821 10-142 (409)
89 cd01896 DRG The developmentall 99.0 1.7E-09 3.6E-14 117.2 12.8 88 691-784 2-89 (233)
90 TIGR00231 small_GTP small GTP- 99.0 1.1E-09 2.4E-14 103.8 9.9 119 689-822 1-123 (161)
91 smart00175 RAB Rab subfamily o 99.0 4.1E-09 8.8E-14 103.7 13.5 116 690-821 1-119 (164)
92 cd04142 RRP22 RRP22 subfamily. 99.0 2.1E-09 4.5E-14 113.3 11.8 126 690-821 1-130 (198)
93 cd01860 Rab5_related Rab5-rela 99.0 2.3E-09 5.1E-14 105.8 11.5 116 690-821 2-120 (163)
94 cd01891 TypA_BipA TypA (tyrosi 99.0 5E-09 1.1E-13 108.6 14.3 114 690-821 3-131 (194)
95 cd04145 M_R_Ras_like M-Ras/R-R 99.0 3.3E-09 7.1E-14 104.6 12.1 118 689-821 2-121 (164)
96 cd01863 Rab18 Rab18 subfamily. 99.0 2.5E-09 5.4E-14 105.6 10.9 118 690-821 1-120 (161)
97 cd01868 Rab11_like Rab11-like. 99.0 5.4E-09 1.2E-13 103.9 13.3 117 689-821 3-122 (165)
98 cd01886 EF-G Elongation factor 99.0 3.4E-09 7.3E-14 117.7 13.0 113 691-821 1-130 (270)
99 cd01866 Rab2 Rab2 subfamily. 99.0 4.3E-09 9.3E-14 106.0 12.5 119 688-822 3-124 (168)
100 PF00009 GTP_EFTU: Elongation 99.0 2.8E-09 6.1E-14 110.4 11.3 114 689-820 3-135 (188)
101 PF00350 Dynamin_N: Dynamin fa 99.0 1.6E-09 3.4E-14 108.7 9.1 112 692-817 1-168 (168)
102 cd04154 Arl2 Arl2 subfamily. 99.0 5.6E-09 1.2E-13 105.7 13.1 115 688-821 13-129 (173)
103 cd04157 Arl6 Arl6 subfamily. 99.0 3.3E-09 7.1E-14 104.4 11.0 117 691-821 1-118 (162)
104 cd04123 Rab21 Rab21 subfamily. 99.0 5.4E-09 1.2E-13 102.1 12.4 116 690-821 1-119 (162)
105 cd04138 H_N_K_Ras_like H-Ras/N 99.0 5E-09 1.1E-13 102.4 11.7 116 690-821 2-120 (162)
106 cd04101 RabL4 RabL4 (Rab-like4 99.0 9.9E-09 2.2E-13 101.7 14.0 117 690-822 1-122 (164)
107 cd04113 Rab4 Rab4 subfamily. 99.0 6.2E-09 1.3E-13 103.1 12.4 117 690-821 1-119 (161)
108 cd01864 Rab19 Rab19 subfamily. 99.0 7.5E-09 1.6E-13 103.3 13.1 119 689-822 3-123 (165)
109 smart00178 SAR Sar1p-like memb 99.0 1.1E-08 2.3E-13 105.8 14.5 114 688-820 16-131 (184)
110 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 7.6E-09 1.7E-13 103.2 13.0 117 689-821 2-121 (166)
111 cd04140 ARHI_like ARHI subfami 99.0 3.9E-09 8.4E-14 105.8 10.9 118 690-821 2-122 (165)
112 COG1162 Predicted GTPases [Gen 99.0 1.5E-09 3.3E-14 122.2 8.8 91 690-783 165-265 (301)
113 cd00876 Ras Ras family. The R 99.0 4.8E-09 1E-13 102.3 11.2 116 691-821 1-118 (160)
114 PRK12317 elongation factor 1-a 98.9 5E-09 1.1E-13 122.1 13.2 117 688-821 5-153 (425)
115 cd04156 ARLTS1 ARLTS1 subfamil 98.9 7.1E-09 1.5E-13 102.3 12.1 111 691-820 1-114 (160)
116 cd04106 Rab23_lke Rab23-like s 98.9 9.5E-09 2.1E-13 101.4 13.0 116 690-822 1-121 (162)
117 cd01890 LepA LepA subfamily. 98.9 7.3E-09 1.6E-13 104.3 12.1 112 691-820 2-132 (179)
118 cd04151 Arl1 Arl1 subfamily. 98.9 8.4E-09 1.8E-13 102.5 12.3 112 691-821 1-114 (158)
119 cd04159 Arl10_like Arl10-like 98.9 1.2E-08 2.6E-13 98.4 13.0 112 692-821 2-115 (159)
120 cd01862 Rab7 Rab7 subfamily. 98.9 1.2E-08 2.7E-13 101.3 13.4 120 690-822 1-124 (172)
121 TIGR02528 EutP ethanolamine ut 98.9 4.8E-09 1E-13 102.3 10.1 101 691-821 2-102 (142)
122 cd00878 Arf_Arl Arf (ADP-ribos 98.9 6.3E-09 1.4E-13 102.7 10.9 113 691-822 1-115 (158)
123 cd04136 Rap_like Rap-like subf 98.9 7.1E-09 1.5E-13 102.1 11.2 117 690-821 2-120 (163)
124 PLN03127 Elongation factor Tu; 98.9 1.4E-08 3.1E-13 120.1 15.6 117 687-821 59-191 (447)
125 cd04118 Rab24 Rab24 subfamily. 98.9 1.1E-08 2.4E-13 105.1 12.8 117 690-822 1-120 (193)
126 PLN03118 Rab family protein; P 98.9 6.5E-09 1.4E-13 109.3 11.3 119 688-821 13-134 (211)
127 PF03193 DUF258: Protein of un 98.9 6.6E-10 1.4E-14 115.7 3.7 117 633-779 6-132 (161)
128 cd00157 Rho Rho (Ras homology) 98.9 5E-09 1.1E-13 104.0 9.8 117 690-823 1-120 (171)
129 smart00173 RAS Ras subfamily o 98.9 7.2E-09 1.6E-13 102.7 10.6 117 690-821 1-119 (164)
130 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.9 1.9E-08 4.2E-13 102.5 13.4 114 689-821 15-130 (174)
131 cd04149 Arf6 Arf6 subfamily. 98.9 1.8E-08 3.9E-13 102.7 13.1 114 688-820 8-123 (168)
132 cd01867 Rab8_Rab10_Rab13_like 98.9 1.3E-08 2.8E-13 102.3 11.8 118 688-821 2-122 (167)
133 PF08477 Miro: Miro-like prote 98.9 2.8E-09 6E-14 101.0 6.5 116 691-818 1-119 (119)
134 cd04161 Arl2l1_Arl13_like Arl2 98.9 1.7E-08 3.7E-13 102.4 12.7 112 691-821 1-114 (167)
135 cd00879 Sar1 Sar1 subfamily. 98.9 1.8E-08 3.9E-13 103.0 13.0 115 688-821 18-134 (190)
136 cd04124 RabL2 RabL2 subfamily. 98.9 1.9E-08 4E-13 101.0 12.6 112 690-819 1-116 (161)
137 cd04158 ARD1 ARD1 subfamily. 98.9 1.5E-08 3.2E-13 102.7 11.9 111 691-820 1-113 (169)
138 cd04155 Arl3 Arl3 subfamily. 98.9 2.6E-08 5.6E-13 99.8 13.4 116 687-821 12-129 (173)
139 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 1.3E-08 2.8E-13 104.9 11.4 117 689-820 3-122 (183)
140 cd04112 Rab26 Rab26 subfamily. 98.9 1.6E-08 3.5E-13 104.7 11.9 117 690-821 1-120 (191)
141 PRK12735 elongation factor Tu; 98.9 2.5E-08 5.5E-13 115.8 14.7 117 687-821 10-142 (396)
142 cd04170 EF-G_bact Elongation f 98.9 2.2E-08 4.7E-13 109.9 13.4 113 691-821 1-130 (268)
143 cd04175 Rap1 Rap1 subgroup. T 98.9 1.8E-08 3.8E-13 100.4 11.4 117 690-821 2-120 (164)
144 COG2262 HflX GTPases [General 98.8 9.9E-09 2.1E-13 119.0 10.8 127 688-822 191-319 (411)
145 cd01865 Rab3 Rab3 subfamily. 98.8 3.6E-08 7.8E-13 98.9 13.6 116 690-822 2-121 (165)
146 cd04109 Rab28 Rab28 subfamily. 98.8 2.5E-08 5.4E-13 105.6 13.0 118 690-821 1-123 (215)
147 cd04127 Rab27A Rab27a subfamil 98.8 3.1E-08 6.8E-13 100.0 13.1 117 689-821 4-134 (180)
148 PRK00049 elongation factor Tu; 98.8 3.1E-08 6.6E-13 115.3 14.8 117 687-821 10-142 (396)
149 smart00053 DYNc Dynamin, GTPas 98.8 4.6E-08 1E-12 107.6 15.2 126 689-822 26-207 (240)
150 cd04146 RERG_RasL11_like RERG/ 98.8 9.7E-09 2.1E-13 102.5 9.2 118 691-821 1-120 (165)
151 TIGR00437 feoB ferrous iron tr 98.8 1.5E-08 3.3E-13 123.4 12.5 114 696-822 1-114 (591)
152 PRK00007 elongation factor G; 98.8 2.8E-08 6.1E-13 123.0 14.8 115 689-821 10-141 (693)
153 PRK12739 elongation factor G; 98.8 1.9E-08 4.1E-13 124.4 13.1 115 689-821 8-139 (691)
154 cd04168 TetM_like Tet(M)-like 98.8 4.1E-08 8.9E-13 107.0 14.0 113 691-821 1-130 (237)
155 cd04139 RalA_RalB RalA/RalB su 98.8 2.2E-08 4.7E-13 98.4 10.6 117 690-821 1-119 (164)
156 cd04116 Rab9 Rab9 subfamily. 98.8 4.5E-08 9.7E-13 98.1 13.0 120 688-820 4-127 (170)
157 PRK12736 elongation factor Tu; 98.8 4.3E-08 9.4E-13 113.9 14.8 117 687-821 10-142 (394)
158 cd04114 Rab30 Rab30 subfamily. 98.8 4.5E-08 9.8E-13 97.5 12.9 119 689-822 7-127 (169)
159 cd04115 Rab33B_Rab33A Rab33B/R 98.8 5E-08 1.1E-12 98.5 13.3 118 689-821 2-123 (170)
160 cd00882 Ras_like_GTPase Ras-li 98.8 1.8E-08 4E-13 93.7 9.1 115 694-822 1-117 (157)
161 cd04144 Ras2 Ras2 subfamily. 98.8 2.3E-08 5E-13 103.5 10.7 117 691-821 1-120 (190)
162 cd04122 Rab14 Rab14 subfamily. 98.8 4.5E-08 9.8E-13 98.1 12.5 116 690-822 3-122 (166)
163 cd04176 Rap2 Rap2 subgroup. T 98.8 2.4E-08 5.1E-13 99.2 10.3 117 690-821 2-120 (163)
164 TIGR00484 EF-G translation elo 98.8 3.8E-08 8.1E-13 121.7 14.3 115 689-821 10-141 (689)
165 TIGR00485 EF-Tu translation el 98.8 6.5E-08 1.4E-12 112.2 15.3 117 687-821 10-142 (394)
166 cd04125 RabA_like RabA-like su 98.8 2.8E-08 6.2E-13 102.1 11.0 116 690-821 1-119 (188)
167 PRK15467 ethanolamine utilizat 98.8 2.8E-08 6.1E-13 101.2 10.7 102 691-820 3-104 (158)
168 cd04111 Rab39 Rab39 subfamily. 98.8 4.4E-08 9.6E-13 104.1 12.5 119 689-821 2-123 (211)
169 PRK05506 bifunctional sulfate 98.8 3.8E-08 8.3E-13 120.5 13.8 118 687-821 22-171 (632)
170 PLN03126 Elongation factor Tu; 98.8 8.7E-08 1.9E-12 114.4 15.9 118 687-821 79-211 (478)
171 smart00177 ARF ARF-like small 98.8 6.2E-08 1.3E-12 99.3 12.5 113 689-820 13-127 (175)
172 cd04110 Rab35 Rab35 subfamily. 98.8 7.1E-08 1.5E-12 100.9 13.2 117 688-821 5-124 (199)
173 cd04150 Arf1_5_like Arf1-Arf5- 98.8 5.8E-08 1.3E-12 97.8 12.1 112 690-820 1-114 (159)
174 PTZ00133 ADP-ribosylation fact 98.8 6.3E-08 1.4E-12 100.3 12.5 115 688-821 16-132 (182)
175 cd04147 Ras_dva Ras-dva subfam 98.8 3.2E-08 6.9E-13 103.2 10.3 116 691-821 1-118 (198)
176 cd00877 Ran Ran (Ras-related n 98.8 3.1E-08 6.7E-13 100.4 10.0 113 690-820 1-117 (166)
177 cd01893 Miro1 Miro1 subfamily. 98.8 4.3E-08 9.3E-13 98.7 10.9 114 690-822 1-118 (166)
178 cd04105 SR_beta Signal recogni 98.8 1.1E-07 2.4E-12 100.8 14.3 117 691-822 2-124 (203)
179 cd04137 RheB Rheb (Ras Homolog 98.8 5.5E-08 1.2E-12 98.5 11.5 117 690-821 2-120 (180)
180 TIGR02034 CysN sulfate adenyly 98.7 7.3E-08 1.6E-12 112.5 13.6 115 690-821 1-147 (406)
181 cd04132 Rho4_like Rho4-like su 98.7 5.4E-08 1.2E-12 99.3 10.8 114 690-821 1-119 (187)
182 cd04177 RSR1 RSR1 subgroup. R 98.7 5E-08 1.1E-12 98.2 10.4 118 690-822 2-121 (168)
183 TIGR00475 selB selenocysteine- 98.7 1.2E-07 2.7E-12 115.4 15.7 115 690-821 1-117 (581)
184 cd04169 RF3 RF3 subfamily. Pe 98.7 8.9E-08 1.9E-12 106.3 13.3 114 690-821 3-137 (267)
185 cd04107 Rab32_Rab38 Rab38/Rab3 98.7 8.3E-08 1.8E-12 100.2 12.1 118 690-821 1-124 (201)
186 PRK05124 cysN sulfate adenylyl 98.7 1.2E-07 2.5E-12 113.1 14.9 118 687-821 25-174 (474)
187 PRK09601 GTP-binding protein Y 98.7 3.8E-08 8.3E-13 113.9 10.4 88 690-783 3-107 (364)
188 cd01888 eIF2_gamma eIF2-gamma 98.7 1.6E-07 3.4E-12 99.2 14.2 116 690-821 1-151 (203)
189 PTZ00258 GTP-binding protein; 98.7 3.7E-08 8.1E-13 114.9 10.2 91 687-783 19-126 (390)
190 cd04165 GTPBP1_like GTPBP1-lik 98.7 8.7E-08 1.9E-12 103.8 12.3 115 691-821 1-152 (224)
191 cd04108 Rab36_Rab34 Rab34/Rab3 98.7 1.8E-07 3.8E-12 95.7 13.5 114 691-821 2-120 (170)
192 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 1.2E-07 2.6E-12 96.2 12.0 112 692-821 2-113 (164)
193 PLN00223 ADP-ribosylation fact 98.7 2.8E-07 6E-12 95.6 14.9 114 688-820 16-131 (181)
194 cd01900 YchF YchF subfamily. 98.7 3.7E-08 8E-13 110.2 8.9 86 692-783 1-103 (274)
195 KOG1489 Predicted GTP-binding 98.7 3E-08 6.5E-13 112.1 7.9 126 688-820 195-325 (366)
196 cd04148 RGK RGK subfamily. Th 98.7 7.7E-08 1.7E-12 103.1 10.7 118 690-822 1-121 (221)
197 PLN03110 Rab GTPase; Provision 98.7 1.5E-07 3.2E-12 100.3 12.7 119 688-821 11-131 (216)
198 PTZ00369 Ras-like protein; Pro 98.7 8.9E-08 1.9E-12 99.1 10.4 117 689-820 5-123 (189)
199 cd01883 EF1_alpha Eukaryotic e 98.7 1.4E-07 3E-12 100.9 12.1 115 691-821 1-151 (219)
200 cd01882 BMS1 Bms1. Bms1 is an 98.7 2.1E-07 4.6E-12 100.5 13.4 109 687-821 37-147 (225)
201 smart00174 RHO Rho (Ras homolo 98.7 6.7E-08 1.4E-12 97.0 8.9 112 692-821 1-116 (174)
202 cd04135 Tc10 TC10 subfamily. 98.7 1.5E-07 3.3E-12 94.4 11.4 114 690-821 1-118 (174)
203 cd01892 Miro2 Miro2 subfamily. 98.7 2.2E-07 4.9E-12 94.7 12.6 117 688-821 3-122 (169)
204 cd04117 Rab15 Rab15 subfamily. 98.7 3.1E-07 6.7E-12 92.4 13.1 117 690-822 1-120 (161)
205 cd01885 EF2 EF2 (for archaea a 98.7 2.5E-07 5.5E-12 100.4 13.4 112 691-820 2-138 (222)
206 PRK05306 infB translation init 98.6 1.5E-07 3.2E-12 118.0 12.9 115 687-820 288-402 (787)
207 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.6 2.4E-07 5.2E-12 94.9 12.3 118 689-821 2-121 (172)
208 PRK09866 hypothetical protein; 98.6 1.3E-06 2.8E-11 106.8 20.0 74 737-821 230-303 (741)
209 PLN03071 GTP-binding nuclear p 98.6 1.8E-07 3.8E-12 100.2 11.3 115 688-820 12-130 (219)
210 cd04143 Rhes_like Rhes_like su 98.6 2.7E-07 5.8E-12 101.3 12.5 117 690-821 1-127 (247)
211 cd04167 Snu114p Snu114p subfam 98.6 3.4E-07 7.3E-12 97.1 12.8 113 691-821 2-137 (213)
212 cd04130 Wrch_1 Wrch-1 subfamil 98.6 1.8E-07 3.9E-12 94.8 10.2 114 690-821 1-118 (173)
213 TIGR00483 EF-1_alpha translati 98.6 5.3E-07 1.2E-11 105.6 15.2 118 688-821 6-155 (426)
214 cd01874 Cdc42 Cdc42 subfamily. 98.6 3.1E-07 6.7E-12 94.5 11.3 113 690-821 2-119 (175)
215 PLN03108 Rab family protein; P 98.6 3.9E-07 8.4E-12 96.6 12.3 118 688-821 5-125 (210)
216 TIGR00487 IF-2 translation ini 98.6 2.5E-07 5.5E-12 112.9 12.4 115 687-820 85-200 (587)
217 PRK10512 selenocysteinyl-tRNA- 98.6 6.1E-07 1.3E-11 110.1 15.6 114 691-821 2-118 (614)
218 KOG3859 Septins (P-loop GTPase 98.6 2.6E-07 5.5E-12 103.1 11.0 174 654-855 17-214 (406)
219 COG1163 DRG Predicted GTPase [ 98.6 1.2E-07 2.5E-12 107.8 8.4 61 689-750 63-123 (365)
220 PF05049 IIGP: Interferon-indu 98.6 1.6E-07 3.5E-12 109.1 9.8 115 688-819 34-153 (376)
221 COG0536 Obg Predicted GTPase [ 98.6 1.9E-07 4.1E-12 106.7 10.1 126 691-822 161-290 (369)
222 CHL00189 infB translation init 98.6 3.7E-07 8.1E-12 113.7 13.5 116 687-821 242-361 (742)
223 KOG2485 Conserved ATP/GTP bind 98.6 4.9E-07 1.1E-11 102.4 12.4 176 543-754 33-213 (335)
224 KOG2423 Nucleolar GTPase [Gene 98.5 6.4E-08 1.4E-12 111.5 5.3 153 565-751 213-366 (572)
225 cd01870 RhoA_like RhoA-like su 98.5 3.2E-07 6.9E-12 92.2 9.3 114 690-821 2-119 (175)
226 cd04134 Rho3 Rho3 subfamily. 98.5 3.6E-07 7.8E-12 94.8 10.0 117 690-822 1-119 (189)
227 cd04120 Rab12 Rab12 subfamily. 98.5 6.9E-07 1.5E-11 95.3 12.1 114 690-821 1-119 (202)
228 cd01871 Rac1_like Rac1-like su 98.5 6.6E-07 1.4E-11 92.0 11.4 114 690-821 2-119 (174)
229 cd01851 GBP Guanylate-binding 98.5 1.7E-06 3.7E-11 93.8 14.9 127 689-822 7-149 (224)
230 cd04121 Rab40 Rab40 subfamily. 98.5 1.3E-06 2.8E-11 92.2 13.5 117 688-821 5-124 (189)
231 TIGR01394 TypA_BipA GTP-bindin 98.5 1.2E-06 2.7E-11 107.2 15.2 113 690-820 2-129 (594)
232 cd04126 Rab20 Rab20 subfamily. 98.5 6.3E-07 1.4E-11 97.1 11.2 113 690-821 1-114 (220)
233 TIGR00491 aIF-2 translation in 98.5 6.8E-07 1.5E-11 109.3 12.2 114 689-821 4-135 (590)
234 PRK10218 GTP-binding protein; 98.5 7.6E-07 1.6E-11 109.2 12.6 114 689-820 5-133 (607)
235 KOG2484 GTPase [General functi 98.5 1E-07 2.3E-12 110.2 4.9 163 564-753 145-313 (435)
236 PLN00023 GTP-binding protein; 98.5 1.1E-06 2.3E-11 101.0 12.7 119 688-822 20-166 (334)
237 PTZ00416 elongation factor 2; 98.5 1.2E-06 2.5E-11 111.0 14.2 115 688-820 18-157 (836)
238 cd04128 Spg1 Spg1p. Spg1p (se 98.5 1.3E-06 2.8E-11 90.9 12.2 114 690-821 1-118 (182)
239 PRK01889 GTPase RsgA; Reviewed 98.5 1.8E-07 3.9E-12 107.9 6.5 108 652-779 175-291 (356)
240 cd04131 Rnd Rnd subfamily. Th 98.4 1.5E-06 3.2E-11 90.3 11.8 112 690-820 2-118 (178)
241 PF10662 PduV-EutP: Ethanolami 98.4 1.8E-06 3.9E-11 89.0 12.0 101 691-821 3-103 (143)
242 PF00025 Arf: ADP-ribosylation 98.4 1.3E-06 2.8E-11 90.4 10.4 116 687-821 12-129 (175)
243 TIGR01393 lepA GTP-binding pro 98.4 1.5E-06 3.3E-11 106.4 12.6 113 690-820 4-135 (595)
244 TIGR03680 eif2g_arch translati 98.4 2.8E-06 6E-11 99.4 14.0 118 688-821 3-148 (406)
245 TIGR00503 prfC peptide chain r 98.4 2.1E-06 4.6E-11 103.8 13.3 115 688-820 10-145 (527)
246 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.4 2.8E-06 6.1E-11 88.9 12.4 114 688-820 4-122 (182)
247 PRK09602 translation-associate 98.4 1E-06 2.3E-11 103.1 10.2 89 690-784 2-114 (396)
248 PRK13351 elongation factor G; 98.4 2.5E-06 5.4E-11 105.7 14.1 115 689-821 8-139 (687)
249 cd01875 RhoG RhoG subfamily. 98.4 3.3E-06 7.2E-11 88.1 12.9 116 689-821 3-121 (191)
250 PTZ00141 elongation factor 1- 98.4 4.5E-06 9.7E-11 99.1 15.5 117 688-820 6-158 (446)
251 TIGR02836 spore_IV_A stage IV 98.4 1E-06 2.2E-11 103.4 9.9 126 687-820 15-193 (492)
252 cd01899 Ygr210 Ygr210 subfamil 98.4 1.3E-06 2.8E-11 99.8 10.2 87 692-784 1-111 (318)
253 cd04102 RabL3 RabL3 (Rab-like3 98.4 3.9E-06 8.4E-11 90.0 12.9 113 690-821 1-143 (202)
254 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.4 3.5E-06 7.7E-11 92.2 12.6 115 688-820 12-130 (232)
255 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.3 3.4E-06 7.4E-11 91.6 12.2 114 690-821 2-119 (222)
256 KOG2486 Predicted GTPase [Gene 98.3 1.9E-06 4E-11 96.7 10.3 126 687-821 134-262 (320)
257 PLN00116 translation elongatio 98.3 2.6E-06 5.7E-11 108.0 12.9 116 688-821 18-164 (843)
258 PRK00741 prfC peptide chain re 98.3 2.6E-06 5.5E-11 103.1 12.2 116 688-821 9-145 (526)
259 COG1100 GTPase SAR1 and relate 98.3 5.4E-06 1.2E-10 86.6 12.8 118 690-822 6-126 (219)
260 PRK04004 translation initiatio 98.3 3.7E-06 7.9E-11 103.0 12.5 114 688-820 5-136 (586)
261 PTZ00132 GTP-binding nuclear p 98.3 4.7E-06 1E-10 88.0 11.7 116 688-820 8-126 (215)
262 cd04129 Rho2 Rho2 subfamily. 98.3 5.3E-06 1.1E-10 85.9 11.5 114 690-821 2-119 (187)
263 TIGR00490 aEF-2 translation el 98.3 4.4E-06 9.5E-11 104.3 12.6 116 688-821 18-152 (720)
264 cd04133 Rop_like Rop subfamily 98.3 5.9E-06 1.3E-10 86.2 11.6 115 690-821 2-119 (176)
265 PF00071 Ras: Ras family; Int 98.3 5.2E-06 1.1E-10 82.3 10.6 115 691-821 1-118 (162)
266 PRK04000 translation initiatio 98.3 8.7E-06 1.9E-10 95.7 13.7 120 687-822 7-154 (411)
267 PRK05433 GTP-binding protein L 98.2 5.8E-06 1.3E-10 101.5 12.2 114 689-820 7-139 (600)
268 PRK07560 elongation factor EF- 98.2 8.6E-06 1.9E-10 101.9 13.7 116 688-821 19-153 (731)
269 KOG1424 Predicted GTP-binding 98.2 1.4E-06 3E-11 103.6 6.0 62 689-753 314-375 (562)
270 PRK12740 elongation factor G; 98.2 9E-06 1.9E-10 100.4 13.0 109 695-821 1-126 (668)
271 cd04103 Centaurin_gamma Centau 98.2 1.1E-05 2.4E-10 82.1 10.8 109 690-820 1-112 (158)
272 smart00176 RAN Ran (Ras-relate 98.2 8.9E-06 1.9E-10 86.8 10.3 108 695-820 1-112 (200)
273 PF04670 Gtr1_RagA: Gtr1/RagA 98.1 1.1E-05 2.4E-10 88.8 10.6 124 691-822 1-126 (232)
274 PF09439 SRPRB: Signal recogni 98.0 1.9E-05 4.2E-10 84.2 8.8 117 690-822 4-127 (181)
275 cd01873 RhoBTB RhoBTB subfamil 98.0 4.6E-05 1E-09 80.9 11.5 114 689-821 2-134 (195)
276 PLN00043 elongation factor 1-a 98.0 9.5E-05 2.1E-09 88.2 14.6 118 687-820 5-158 (447)
277 TIGR01425 SRP54_euk signal rec 98.0 5.4E-05 1.2E-09 89.9 12.4 121 688-822 99-254 (429)
278 KOG0073 GTP-binding ADP-ribosy 98.0 6.7E-05 1.4E-09 79.2 11.5 114 688-820 15-130 (185)
279 COG0012 Predicted GTPase, prob 97.8 4.5E-05 9.8E-10 88.7 8.2 90 689-785 2-110 (372)
280 KOG0084 GTPase Rab1/YPT1, smal 97.8 0.00014 3.1E-09 78.5 11.3 117 687-822 7-129 (205)
281 COG5256 TEF1 Translation elong 97.8 0.00018 3.9E-09 84.6 12.7 139 688-851 6-180 (428)
282 PTZ00327 eukaryotic translatio 97.8 0.00018 3.9E-09 86.3 12.9 119 687-821 32-185 (460)
283 TIGR00092 GTP-binding protein 97.8 6.6E-05 1.4E-09 87.7 8.5 88 690-783 3-108 (368)
284 PRK13768 GTPase; Provisional 97.7 0.00012 2.6E-09 81.1 9.1 81 737-822 97-177 (253)
285 PRK09435 membrane ATPase/prote 97.7 0.00027 6E-09 81.6 11.7 24 687-710 54-77 (332)
286 KOG0087 GTPase Rab11/YPT3, sma 97.6 0.0002 4.4E-09 78.0 9.7 121 685-821 10-133 (222)
287 KOG1954 Endocytosis/signaling 97.6 0.00025 5.3E-09 82.4 10.7 129 687-822 56-226 (532)
288 KOG0395 Ras-related GTPase [Ge 97.6 0.00018 3.8E-09 77.3 9.1 118 689-821 3-122 (196)
289 COG2229 Predicted GTPase [Gene 97.6 0.00057 1.2E-08 73.3 12.5 118 688-822 9-136 (187)
290 KOG0078 GTP-binding protein SE 97.6 0.00045 9.8E-09 75.2 11.7 119 686-821 9-131 (207)
291 KOG1486 GTP-binding protein DR 97.6 6.5E-05 1.4E-09 83.6 5.1 107 688-805 61-169 (364)
292 COG4917 EutP Ethanolamine util 97.6 0.0002 4.3E-09 73.1 7.9 104 690-822 2-105 (148)
293 PRK11889 flhF flagellar biosyn 97.6 0.00024 5.2E-09 84.1 9.6 121 688-822 240-392 (436)
294 KOG0410 Predicted GTP binding 97.5 0.00013 2.7E-09 83.7 5.8 128 688-821 177-308 (410)
295 KOG0448 Mitofusin 1 GTPase, in 97.4 0.00036 7.8E-09 85.8 9.1 118 688-822 108-276 (749)
296 PRK14722 flhF flagellar biosyn 97.4 0.00071 1.5E-08 79.5 11.1 128 687-822 135-296 (374)
297 KOG0447 Dynamin-like GTP bindi 97.4 0.0017 3.8E-08 78.1 14.2 129 688-822 307-494 (980)
298 KOG1145 Mitochondrial translat 97.4 0.00097 2.1E-08 80.6 11.9 115 687-820 151-266 (683)
299 KOG0080 GTPase Rab18, small G 97.4 0.00054 1.2E-08 72.4 8.5 114 688-819 10-129 (209)
300 KOG1491 Predicted GTP-binding 97.4 0.00039 8.4E-09 80.3 8.0 91 687-784 18-126 (391)
301 KOG3883 Ras family small GTPas 97.3 0.001 2.3E-08 69.9 9.9 124 686-822 6-133 (198)
302 COG0480 FusA Translation elong 97.3 0.0011 2.4E-08 83.0 11.9 117 688-822 9-143 (697)
303 KOG1532 GTPase XAB1, interacts 97.3 0.00023 5E-09 80.3 5.3 102 737-854 116-220 (366)
304 TIGR03348 VI_IcmF type VI secr 97.3 0.00084 1.8E-08 88.4 11.3 124 691-821 113-257 (1169)
305 KOG1707 Predicted Ras related/ 97.3 0.001 2.2E-08 80.9 10.8 122 687-822 7-130 (625)
306 COG0532 InfB Translation initi 97.3 0.0017 3.7E-08 78.5 12.6 112 688-821 4-121 (509)
307 PF00448 SRP54: SRP54-type pro 97.3 0.00068 1.5E-08 72.8 8.3 73 736-822 83-155 (196)
308 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.3 0.0017 3.7E-08 70.5 11.1 116 689-822 22-143 (221)
309 PRK12727 flagellar biosynthesi 97.3 0.002 4.2E-08 78.8 12.8 25 687-711 348-372 (559)
310 PRK14974 cell division protein 97.3 0.0004 8.6E-09 80.5 6.6 121 688-822 139-294 (336)
311 PRK12726 flagellar biosynthesi 97.3 0.00089 1.9E-08 79.0 9.3 121 688-822 205-357 (407)
312 KOG0394 Ras-related GTPase [Ge 97.3 0.00077 1.7E-08 72.6 8.0 114 688-820 8-131 (210)
313 KOG0079 GTP-binding protein H- 97.2 0.0014 2.9E-08 68.7 9.2 114 690-821 9-126 (198)
314 KOG0092 GTPase Rab5/YPT51 and 97.2 0.0018 3.8E-08 70.1 10.3 116 688-822 4-125 (200)
315 KOG0462 Elongation factor-type 97.2 0.0017 3.8E-08 78.6 11.2 115 689-821 60-191 (650)
316 TIGR00064 ftsY signal recognit 97.2 0.0019 4.1E-08 72.7 10.8 121 688-822 71-232 (272)
317 PRK10416 signal recognition pa 97.1 0.0026 5.6E-08 73.2 11.4 124 688-822 113-274 (318)
318 PRK14721 flhF flagellar biosyn 97.1 0.00096 2.1E-08 79.4 8.1 121 688-822 190-341 (420)
319 COG1217 TypA Predicted membran 97.1 0.0024 5.3E-08 76.3 10.8 114 690-821 6-134 (603)
320 COG5192 BMS1 GTP-binding prote 97.1 0.0025 5.4E-08 76.9 10.7 113 684-822 64-178 (1077)
321 COG1419 FlhF Flagellar GTP-bin 97.0 0.001 2.2E-08 78.5 6.5 119 689-821 203-352 (407)
322 cd03112 CobW_like The function 97.0 0.0023 5E-08 66.1 8.0 21 692-712 3-23 (158)
323 KOG0095 GTPase Rab30, small G 97.0 0.01 2.2E-07 62.4 12.5 120 685-821 3-126 (213)
324 PF03029 ATP_bind_1: Conserved 97.0 0.00072 1.6E-08 74.7 4.4 78 738-822 92-171 (238)
325 PRK14723 flhF flagellar biosyn 96.9 0.0011 2.5E-08 83.5 6.0 122 689-822 185-338 (767)
326 COG2895 CysN GTPases - Sulfate 96.9 0.0056 1.2E-07 71.4 10.7 118 688-822 5-154 (431)
327 KOG0090 Signal recognition par 96.8 0.014 2.9E-07 64.6 12.7 116 689-822 38-160 (238)
328 TIGR00750 lao LAO/AO transport 96.8 0.0059 1.3E-07 69.3 10.3 24 688-711 33-56 (300)
329 KOG0458 Elongation factor 1 al 96.8 0.0092 2E-07 73.0 12.4 118 688-821 176-329 (603)
330 PRK14845 translation initiatio 96.8 0.0093 2E-07 77.9 13.2 103 700-821 472-592 (1049)
331 KOG0098 GTPase Rab2, small G p 96.8 0.0087 1.9E-07 64.9 10.8 116 689-822 6-126 (216)
332 PRK05703 flhF flagellar biosyn 96.7 0.0018 3.9E-08 77.1 5.7 119 689-821 221-371 (424)
333 PRK12724 flagellar biosynthesi 96.7 0.014 2.9E-07 70.0 12.6 120 689-822 223-374 (432)
334 KOG0075 GTP-binding ADP-ribosy 96.7 0.0074 1.6E-07 63.4 8.7 115 689-821 20-136 (186)
335 COG4108 PrfC Peptide chain rel 96.6 0.13 2.8E-06 61.9 19.1 115 689-821 12-147 (528)
336 COG3276 SelB Selenocysteine-sp 96.6 0.016 3.4E-07 69.3 11.7 115 691-822 2-118 (447)
337 cd03115 SRP The signal recogni 96.5 0.016 3.5E-07 59.7 10.5 73 736-822 82-154 (173)
338 PRK06731 flhF flagellar biosyn 96.5 0.0071 1.5E-07 68.4 8.4 120 689-822 75-226 (270)
339 PRK00771 signal recognition pa 96.5 0.0023 5E-08 76.6 4.4 121 688-822 94-247 (437)
340 KOG0070 GTP-binding ADP-ribosy 96.4 0.01 2.3E-07 63.8 8.0 115 688-821 16-132 (181)
341 PRK12723 flagellar biosynthesi 96.3 0.023 5E-07 67.4 11.1 121 688-822 173-327 (388)
342 COG3523 IcmF Type VI protein s 96.3 0.013 2.8E-07 77.1 9.8 124 692-821 128-270 (1188)
343 KOG0093 GTPase Rab3, small G p 96.2 0.042 9.2E-07 58.0 10.9 136 689-855 21-161 (193)
344 KOG0077 Vesicle coat complex C 96.2 0.014 2.9E-07 62.5 7.4 117 689-822 20-136 (193)
345 KOG1487 GTP-binding protein DR 96.1 0.0047 1E-07 69.6 4.0 119 690-818 60-180 (358)
346 KOG0461 Selenocysteine-specifi 96.1 0.059 1.3E-06 63.0 12.6 118 687-822 5-137 (522)
347 KOG0468 U5 snRNP-specific prot 96.0 0.056 1.2E-06 67.1 12.6 145 689-859 128-293 (971)
348 PRK10867 signal recognition pa 96.0 0.02 4.4E-07 68.7 8.9 120 688-821 99-254 (433)
349 PF02263 GBP: Guanylate-bindin 96.0 0.083 1.8E-06 59.2 13.1 156 690-855 22-211 (260)
350 PF00004 AAA: ATPase family as 95.9 0.024 5.2E-07 54.4 7.4 103 692-818 1-111 (132)
351 KOG3886 GTP-binding protein [S 95.9 0.031 6.6E-07 62.6 8.7 127 689-823 4-132 (295)
352 PRK06995 flhF flagellar biosyn 95.8 0.015 3.2E-07 70.7 6.7 23 689-711 256-278 (484)
353 PF00009 GTP_EFTU: Elongation 95.6 0.018 3.9E-07 60.2 5.4 93 565-676 93-187 (188)
354 KOG0074 GTP-binding ADP-ribosy 95.6 0.04 8.7E-07 57.8 7.7 117 687-822 15-134 (185)
355 KOG1144 Translation initiation 95.5 0.056 1.2E-06 67.8 10.0 114 689-821 475-606 (1064)
356 cd03114 ArgK-like The function 95.5 0.047 1E-06 56.3 8.1 20 692-711 2-21 (148)
357 PF03308 ArgK: ArgK protein; 95.4 0.016 3.6E-07 65.5 4.8 24 687-710 27-50 (266)
358 KOG0446 Vacuolar sorting prote 95.3 0.01 2.2E-07 74.4 2.8 79 738-822 133-214 (657)
359 KOG0781 Signal recognition par 95.2 0.012 2.6E-07 70.7 2.9 125 687-820 376-543 (587)
360 TIGR00959 ffh signal recogniti 95.1 0.075 1.6E-06 63.9 9.4 72 736-821 182-253 (428)
361 KOG0393 Ras-related small GTPa 95.1 0.036 7.8E-07 60.6 6.1 116 689-820 4-122 (198)
362 KOG0071 GTP-binding ADP-ribosy 95.1 0.18 4E-06 53.1 10.7 115 688-821 16-132 (180)
363 PF05673 DUF815: Protein of un 95.1 0.13 2.9E-06 58.0 10.5 131 653-815 17-147 (249)
364 KOG0467 Translation elongation 95.1 0.056 1.2E-06 68.0 8.2 112 689-820 9-137 (887)
365 COG0481 LepA Membrane GTPase L 95.1 0.078 1.7E-06 64.2 9.0 114 690-821 10-142 (603)
366 COG1159 Era GTPase [General fu 94.9 0.044 9.6E-07 63.0 6.3 115 526-677 59-173 (298)
367 cd03222 ABC_RNaseL_inhibitor T 94.7 0.12 2.6E-06 55.1 8.6 26 688-713 24-49 (177)
368 COG0050 TufB GTPases - transla 94.6 0.29 6.2E-06 56.8 11.7 136 687-851 10-162 (394)
369 COG0552 FtsY Signal recognitio 94.5 0.1 2.2E-06 61.0 8.0 124 687-821 137-298 (340)
370 KOG0086 GTPase Rab4, small G p 94.5 0.29 6.3E-06 52.1 10.5 84 687-785 7-94 (214)
371 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.5 0.27 5.8E-06 50.1 10.2 25 689-713 26-50 (144)
372 cd03229 ABC_Class3 This class 94.5 0.13 2.7E-06 53.8 8.0 25 689-713 26-50 (178)
373 COG0488 Uup ATPase components 94.5 0.12 2.5E-06 63.8 8.9 28 688-715 28-55 (530)
374 KOG0076 GTP-binding ADP-ribosy 94.5 0.064 1.4E-06 57.9 5.7 118 689-820 17-139 (197)
375 COG0488 Uup ATPase components 94.2 0.16 3.4E-06 62.8 9.0 27 688-714 347-373 (530)
376 KOG0097 GTPase Rab14, small G 94.1 0.47 1E-05 49.9 11.0 116 689-822 11-131 (215)
377 COG1703 ArgK Putative periplas 94.1 0.17 3.8E-06 58.5 8.6 24 687-710 49-72 (323)
378 KOG4252 GTP-binding protein [S 94.1 0.023 5E-07 61.4 1.5 121 686-822 17-139 (246)
379 KOG0780 Signal recognition par 94.0 0.37 8.1E-06 57.5 11.1 122 687-822 99-255 (483)
380 TIGR02868 CydC thiol reductant 93.9 0.17 3.6E-06 61.3 8.4 25 689-713 361-385 (529)
381 KOG0091 GTPase Rab39, small G 93.8 0.14 3.1E-06 54.9 6.8 116 689-821 8-130 (213)
382 PF02492 cobW: CobW/HypB/UreG, 93.8 0.12 2.7E-06 54.3 6.3 118 691-822 2-156 (178)
383 cd00009 AAA The AAA+ (ATPases 93.8 0.18 3.9E-06 47.8 6.8 24 689-712 19-42 (151)
384 TIGR03263 guanyl_kin guanylate 93.7 0.029 6.3E-07 57.8 1.4 55 691-747 3-57 (180)
385 cd03228 ABCC_MRP_Like The MRP 93.7 0.48 1E-05 49.2 10.3 26 689-714 28-53 (171)
386 KOG1143 Predicted translation 93.6 0.21 4.7E-06 59.0 8.2 136 689-852 167-337 (591)
387 cd03230 ABC_DR_subfamily_A Thi 93.6 0.28 6.1E-06 51.0 8.5 25 689-713 26-50 (173)
388 cd01894 EngA1 EngA1 subfamily. 93.6 0.12 2.7E-06 50.5 5.5 75 565-666 76-150 (157)
389 PRK09866 hypothetical protein; 93.5 0.054 1.2E-06 67.8 3.5 89 565-672 258-349 (741)
390 PTZ00099 rab6; Provisional 93.4 0.45 9.8E-06 50.2 9.7 75 732-821 22-99 (176)
391 COG5257 GCD11 Translation init 93.4 0.4 8.6E-06 56.2 9.7 119 687-822 8-155 (415)
392 cd02038 FleN-like FleN is a me 93.3 0.79 1.7E-05 46.4 10.9 98 693-818 4-108 (139)
393 cd01884 EF_Tu EF-Tu subfamily. 93.3 0.11 2.3E-06 56.0 4.9 84 565-663 88-172 (195)
394 cd01983 Fer4_NifH The Fer4_Nif 93.2 0.47 1E-05 42.6 8.2 72 692-787 2-73 (99)
395 cd03247 ABCC_cytochrome_bd The 93.1 0.15 3.3E-06 53.1 5.6 26 689-714 28-53 (178)
396 cd01857 HSR1_MMR1 HSR1/MMR1. 93.1 0.19 4.2E-06 50.6 6.1 55 761-821 2-56 (141)
397 cd03243 ABC_MutS_homologs The 93.0 0.42 9E-06 51.1 8.9 22 690-711 30-51 (202)
398 cd00071 GMPK Guanosine monopho 92.9 0.063 1.4E-06 54.5 2.4 54 692-747 2-56 (137)
399 COG5258 GTPBP1 GTPase [General 92.8 0.74 1.6E-05 55.0 11.0 120 687-822 115-270 (527)
400 cd04165 GTPBP1_like GTPBP1-lik 92.7 0.1 2.3E-06 57.2 3.9 90 565-666 109-215 (224)
401 COG4988 CydD ABC-type transpor 92.7 0.15 3.3E-06 62.9 5.6 26 689-714 347-372 (559)
402 cd03281 ABC_MSH5_euk MutS5 hom 92.6 0.55 1.2E-05 51.2 9.2 21 690-710 30-50 (213)
403 KOG0088 GTPase Rab21, small G 92.6 0.076 1.6E-06 56.6 2.5 117 687-821 11-132 (218)
404 PF00005 ABC_tran: ABC transpo 92.5 0.084 1.8E-06 51.9 2.6 26 689-714 11-36 (137)
405 KOG0054 Multidrug resistance-a 92.5 0.16 3.4E-06 68.3 5.9 24 689-712 1166-1189(1381)
406 PRK11537 putative GTP-binding 92.5 0.88 1.9E-05 52.9 11.1 22 691-712 6-27 (318)
407 PRK08472 fliI flagellum-specif 92.4 0.078 1.7E-06 63.9 2.6 91 688-786 156-259 (434)
408 COG0194 Gmk Guanylate kinase [ 92.3 0.057 1.2E-06 58.7 1.2 54 689-745 4-57 (191)
409 cd03279 ABC_sbcCD SbcCD and ot 92.2 1.4 3E-05 47.7 11.5 21 691-711 30-50 (213)
410 cd04166 CysN_ATPS CysN_ATPS su 92.2 0.12 2.5E-06 55.4 3.4 86 565-665 100-185 (208)
411 PRK13695 putative NTPase; Prov 92.1 0.68 1.5E-05 48.2 8.8 23 690-712 1-23 (174)
412 COG0541 Ffh Signal recognition 92.1 0.41 9E-06 57.8 7.9 121 687-821 98-253 (451)
413 cd03223 ABCD_peroxisomal_ALDP 92.1 0.94 2E-05 47.2 9.7 26 689-714 27-52 (166)
414 KOG2749 mRNA cleavage and poly 92.0 0.82 1.8E-05 54.2 10.1 24 688-711 102-125 (415)
415 COG1618 Predicted nucleotide k 92.0 1 2.3E-05 48.6 10.0 117 688-818 4-141 (179)
416 PRK14737 gmk guanylate kinase; 92.0 0.099 2.1E-06 56.0 2.5 56 689-746 4-59 (186)
417 KOG0464 Elongation factor G [T 91.9 0.21 4.6E-06 59.5 5.2 114 690-821 38-168 (753)
418 PRK14738 gmk guanylate kinase; 91.9 0.1 2.3E-06 56.2 2.7 26 687-712 11-36 (206)
419 PF13207 AAA_17: AAA domain; P 91.9 0.11 2.3E-06 50.1 2.5 22 691-712 1-22 (121)
420 TIGR00957 MRP_assoc_pro multi 91.8 0.28 6.1E-06 67.1 7.1 23 690-712 1313-1335(1522)
421 cd01889 SelB_euk SelB subfamil 91.8 0.29 6.3E-06 51.3 5.7 91 565-673 91-183 (192)
422 COG1116 TauB ABC-type nitrate/ 91.8 0.092 2E-06 59.2 2.1 25 691-715 31-55 (248)
423 PTZ00243 ABC transporter; Prov 91.8 0.16 3.5E-06 69.5 4.8 23 690-712 1337-1359(1560)
424 cd00267 ABC_ATPase ABC (ATP-bi 91.6 0.5 1.1E-05 48.2 7.1 24 690-713 26-49 (157)
425 PRK00300 gmk guanylate kinase; 91.5 0.14 3E-06 54.1 2.9 25 689-713 5-29 (205)
426 cd02042 ParA ParA and ParB of 91.3 1.7 3.7E-05 41.2 9.8 73 692-786 2-75 (104)
427 COG1341 Predicted GTPase or GT 91.3 0.48 1E-05 56.7 7.4 25 687-711 71-95 (398)
428 TIGR01271 CFTR_protein cystic 91.2 0.22 4.7E-06 68.1 5.1 23 691-713 1247-1269(1490)
429 cd02032 Bchl_like This family 91.0 1.3 2.8E-05 49.1 10.0 19 691-709 2-20 (267)
430 PRK15494 era GTPase Era; Provi 90.9 0.27 5.8E-06 57.2 4.7 86 565-676 131-216 (339)
431 KOG4181 Uncharacterized conser 90.8 3.4 7.4E-05 49.1 13.3 23 690-712 189-211 (491)
432 cd02036 MinD Bacterial cell di 90.6 1.3 2.7E-05 45.2 8.8 63 738-819 64-126 (179)
433 cd03111 CpaE_like This protein 90.6 1.4 3E-05 43.0 8.6 95 694-816 5-106 (106)
434 cd03287 ABC_MSH3_euk MutS3 hom 90.5 1.8 3.9E-05 48.0 10.5 121 690-818 32-154 (222)
435 PLN03232 ABC transporter C fam 90.4 0.97 2.1E-05 62.0 9.9 24 691-714 645-668 (1495)
436 PF13671 AAA_33: AAA domain; P 90.2 0.18 3.8E-06 49.8 2.2 21 692-712 2-22 (143)
437 cd03283 ABC_MutS-like MutS-lik 90.1 1.1 2.4E-05 48.4 8.2 22 691-712 27-48 (199)
438 cd03274 ABC_SMC4_euk Eukaryoti 90.0 3.8 8.2E-05 44.8 12.4 20 691-710 27-46 (212)
439 COG3840 ThiQ ABC-type thiamine 90.0 0.17 3.8E-06 55.4 2.1 24 690-713 26-49 (231)
440 COG5256 TEF1 Translation elong 89.9 0.3 6.4E-06 58.6 4.1 89 564-665 107-202 (428)
441 KOG0081 GTPase Rab27, small G 89.9 0.4 8.7E-06 51.4 4.6 116 689-821 9-138 (219)
442 cd00881 GTP_translation_factor 89.9 0.27 5.9E-06 49.7 3.3 96 565-674 85-185 (189)
443 PF10220 DUF2146: Uncharacteri 89.9 4.7 0.0001 53.0 14.8 183 689-875 11-240 (895)
444 cd03280 ABC_MutS2 MutS2 homolo 89.8 1 2.2E-05 48.2 7.6 20 691-710 30-49 (200)
445 smart00382 AAA ATPases associa 89.8 0.23 5E-06 46.3 2.5 23 690-712 3-25 (148)
446 PLN03130 ABC transporter C fam 89.7 0.28 6.2E-06 67.5 4.3 22 691-712 1267-1288(1622)
447 KOG0066 eIF2-interacting prote 89.7 1.5 3.3E-05 53.2 9.5 24 689-712 613-636 (807)
448 cd03225 ABC_cobalt_CbiO_domain 89.6 0.21 4.5E-06 53.1 2.3 25 689-713 27-51 (211)
449 COG1136 SalX ABC-type antimicr 89.6 0.19 4.1E-06 56.1 2.1 24 691-714 33-56 (226)
450 cd03261 ABC_Org_Solvent_Resist 89.5 0.22 4.7E-06 54.0 2.4 25 689-713 26-50 (235)
451 PLN03232 ABC transporter C fam 89.4 0.27 5.8E-06 67.3 3.6 23 690-712 1263-1285(1495)
452 cd01130 VirB11-like_ATPase Typ 89.4 0.21 4.6E-06 52.8 2.1 24 689-712 25-48 (186)
453 KOG0463 GTP-binding protein GP 89.3 1.4 3E-05 52.6 8.7 88 737-851 219-306 (641)
454 PF13238 AAA_18: AAA domain; P 89.3 0.24 5.2E-06 47.4 2.2 21 692-712 1-21 (129)
455 TIGR02034 CysN sulfate adenyly 89.2 0.36 7.7E-06 57.5 4.1 86 565-665 103-188 (406)
456 cd01128 rho_factor Transcripti 89.2 1.6 3.4E-05 49.4 8.9 27 687-713 14-40 (249)
457 PRK00411 cdc6 cell division co 89.2 1.8 3.9E-05 50.4 9.7 24 689-712 55-78 (394)
458 cd03264 ABC_drug_resistance_li 89.1 0.24 5.1E-06 52.8 2.3 25 688-713 25-49 (211)
459 cd03265 ABC_DrrA DrrA is the A 88.9 0.25 5.4E-06 53.0 2.3 25 689-713 26-50 (220)
460 cd01858 NGP_1 NGP-1. Autoanti 88.9 0.71 1.5E-05 47.2 5.5 51 766-822 4-54 (157)
461 TIGR02673 FtsE cell division A 88.9 0.25 5.5E-06 52.6 2.4 25 689-713 28-52 (214)
462 PRK12736 elongation factor Tu; 88.9 1 2.3E-05 53.4 7.6 80 565-659 98-178 (394)
463 cd03255 ABC_MJ0796_Lo1CDE_FtsE 88.9 0.26 5.5E-06 52.7 2.4 25 689-713 30-54 (218)
464 TIGR00960 3a0501s02 Type II (G 88.9 0.26 5.5E-06 52.7 2.4 25 689-713 29-53 (216)
465 PLN03130 ABC transporter C fam 88.9 1.1 2.5E-05 61.9 8.9 25 690-714 644-668 (1622)
466 PRK04004 translation initiatio 88.9 1.1 2.4E-05 56.2 8.1 92 565-666 94-210 (586)
467 PF05879 RHD3: Root hair defec 88.8 1.2 2.7E-05 57.2 8.7 120 695-820 1-135 (742)
468 TIGR03608 L_ocin_972_ABC putat 88.7 0.27 5.7E-06 52.0 2.3 24 690-713 25-48 (206)
469 cd01883 EF1_alpha Eukaryotic e 88.7 0.45 9.8E-06 51.5 4.1 86 565-663 100-194 (219)
470 COG3839 MalK ABC-type sugar tr 88.7 0.24 5.2E-06 58.2 2.1 24 691-714 31-54 (338)
471 cd03224 ABC_TM1139_LivF_branch 88.6 0.27 5.9E-06 52.5 2.4 25 689-713 26-50 (222)
472 PRK07261 topology modulation p 88.6 0.27 5.8E-06 51.7 2.3 22 690-711 1-22 (171)
473 PRK00089 era GTPase Era; Revie 88.6 0.77 1.7E-05 51.5 6.0 87 565-675 84-170 (292)
474 TIGR01166 cbiO cobalt transpor 88.6 0.28 6.1E-06 51.5 2.4 24 690-713 19-42 (190)
475 cd03260 ABC_PstB_phosphate_tra 88.6 0.26 5.6E-06 53.1 2.2 25 689-713 26-50 (227)
476 cd03293 ABC_NrtD_SsuB_transpor 88.6 0.27 6E-06 52.7 2.4 25 689-713 30-54 (220)
477 TIGR00436 era GTP-binding prot 88.6 0.77 1.7E-05 51.4 5.9 86 565-676 79-164 (270)
478 PRK05506 bifunctional sulfate 88.6 0.39 8.5E-06 60.1 4.0 86 565-665 127-212 (632)
479 cd03292 ABC_FtsE_transporter F 88.5 0.28 6.1E-06 52.1 2.3 25 689-713 27-51 (214)
480 cd03226 ABC_cobalt_CbiO_domain 88.3 0.3 6.4E-06 51.9 2.3 25 689-713 26-50 (205)
481 PRK10078 ribose 1,5-bisphospho 88.2 0.29 6.3E-06 51.6 2.3 23 691-713 4-26 (186)
482 COG1134 TagH ABC-type polysacc 88.2 1.3 2.8E-05 50.3 7.3 25 689-713 53-77 (249)
483 TIGR02211 LolD_lipo_ex lipopro 88.2 0.3 6.5E-06 52.3 2.4 25 689-713 31-55 (221)
484 cd03263 ABC_subfamily_A The AB 88.2 0.3 6.5E-06 52.2 2.3 24 690-713 29-52 (220)
485 TIGR02315 ABC_phnC phosphonate 88.2 0.3 6.4E-06 53.1 2.3 25 689-713 28-52 (243)
486 cd03262 ABC_HisP_GlnQ_permease 88.2 0.3 6.6E-06 51.8 2.4 25 689-713 26-50 (213)
487 cd03269 ABC_putative_ATPase Th 88.1 0.31 6.6E-06 51.9 2.3 25 689-713 26-50 (210)
488 COG2274 SunT ABC-type bacterio 88.1 0.33 7.2E-06 61.8 3.0 26 689-714 499-524 (709)
489 cd03259 ABC_Carb_Solutes_like 88.1 0.31 6.7E-06 52.0 2.3 25 689-713 26-50 (213)
490 cd03258 ABC_MetN_methionine_tr 88.0 0.31 6.7E-06 52.7 2.4 26 689-714 31-56 (233)
491 TIGR02322 phosphon_PhnN phosph 88.0 0.26 5.6E-06 51.1 1.7 22 691-712 3-24 (179)
492 cd03218 ABC_YhbG The ABC trans 87.9 0.32 6.9E-06 52.5 2.3 24 690-713 27-50 (232)
493 cd03257 ABC_NikE_OppD_transpor 87.9 0.32 6.9E-06 52.1 2.4 25 689-713 31-55 (228)
494 cd03235 ABC_Metallic_Cations A 87.9 0.32 7E-06 51.8 2.4 25 689-713 25-49 (213)
495 cd03238 ABC_UvrA The excision 87.9 0.33 7.2E-06 51.8 2.4 24 688-711 20-43 (176)
496 cd03216 ABC_Carb_Monos_I This 87.9 0.33 7.2E-06 50.3 2.4 25 689-713 26-50 (163)
497 PF13521 AAA_28: AAA domain; P 87.8 0.25 5.5E-06 50.6 1.5 22 691-712 1-22 (163)
498 TIGR01978 sufC FeS assembly AT 87.8 0.33 7.1E-06 52.6 2.4 24 689-712 26-49 (243)
499 cd03266 ABC_NatA_sodium_export 87.8 0.33 7.2E-06 51.9 2.3 25 689-713 31-55 (218)
500 cd03256 ABC_PhnC_transporter A 87.8 0.33 7.1E-06 52.6 2.3 25 689-713 27-51 (241)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=5.3e-224 Score=1941.71 Aligned_cols=725 Identities=77% Similarity=1.160 Sum_probs=695.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccC
Q 000717 609 TETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNF 688 (1334)
Q Consensus 609 ~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~ 688 (1334)
+....++++++.++|++.|+++|+|+++|||++|.|.+++||+||++.+.|......+++|.+...+.+.+++..+++.+
T Consensus 38 ~~~~~~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l~~~~~~~~~~s~d~a~~~a~~~ea~g~~~Ldf 117 (763)
T TIGR00993 38 STTTLSEEHKEKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGLLAGRQGGGAFSLDAAKAMAEQLEAEGQDPLDF 117 (763)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHhhccCccccccchhhHHHHhhhhhhhccccCc
Confidence 34577888999999999999999999999999999999999999999998877777777899999999999988888999
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.++|+|+|+||||||||||+|+|+..+.++...++|+.+..+...++|+++.|||||||.+........+.+++.+.+++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877777887877777888999999999999988655445677888898999
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHH
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIG 848 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIe 848 (1334)
..+++|+||||++++.++.+..++.+++.|+++||+.+|+++||||||||.++|+++++.|.+|++|+.+|++.||++|+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Ir 277 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIG 277 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHH
Confidence 98899999999999877665468899999999999999999999999999999999999999999999999999999999
Q ss_pred HhccceeecCcCcCCcccccccCccccccCCCceecCCCCCChHHHHHhHHHHHHHHHHhhhcCCCcccccccccccccc
Q 000717 849 QAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKILSEASSLAKPQESFDHRKLFGFRVR 928 (1334)
Q Consensus 849 QcgGRy~vfNnkd~nPveLVENIP~CvKN~~gE~VLPNG~dW~~~LLlLCys~Kmf~eAe~LLk~q~~~~~~k~fg~~~r 928 (1334)
+|.+++++||+..++|+.|+||+|.|++|..||+|||||+.|+++|+++||+.|++.+|+.+++.|++++..++|+++.|
T Consensus 278 q~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLPnG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~ 357 (763)
T TIGR00993 278 QAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLPNGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSR 357 (763)
T ss_pred HhcCcceecccCCCCCEEEEecCCcccCCCCCceeCCCCchhHHHHHHHHHHhhhhccccccccccccccCCCccccccc
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHhhhhccCCCCCCCCCCCCCCCchhhhhcCCCCcccccccccCCCCCCccchHHHHHHhhHHHHHhhhhhhh
Q 000717 929 SPPLPYLLSWLLQSRTHPKLPTDQGGDNADSDIELADLSDSDQEEEEDEYDLLPPFKPLRKAQIAKLSKEQKKAYFEEYD 1008 (1334)
Q Consensus 929 ~ppLp~Lls~llq~r~~~k~~~~~~~~~~d~d~e~~~~~~~~~~de~deydqLppf~~l~ksq~~kl~keq~k~y~de~~ 1008 (1334)
.||||||||||||+|+|+|++++|+|+++|+|+|+++++|+|+||+|||||||||||||+|||++||||||||+||||||
T Consensus 358 ~~plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~~~d~~~ed~e~eydqlppf~~l~ksq~~kl~k~q~k~y~de~d 437 (763)
T TIGR00993 358 APPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELEDSSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYD 437 (763)
T ss_pred CCchHHHHHHHhhcCCCCCChhhhcCccccccchhhhccccccccccccccccCCCccccHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCcCc-cCCCCCCCCCcccCCCCCcccccCCCCCCCCCCCCCCCcceeeeccCCCc
Q 000717 1009 YRVKLLQKKQWREELRRMREMKKRGNAAT-EDYGYVGEDVDQENGSSAAVPVPLPDMVLPQSFDGDNPAYRYRFLEPNSQ 1087 (1334)
Q Consensus 1009 yR~kl~~kkq~kee~rr~re~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYR~L~~~~q 1087 (1334)
||+|||||||||||+||+|||||++++.. ..+++. +++++++++|++||||||||+||||||||||+||||||+|++|
T Consensus 438 yr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYr~l~~~~q 516 (763)
T TIGR00993 438 YRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYS-EEVDEENGGPAAVPVPLPDMVLPASFDSDNPAYRYRYLEPSSQ 516 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccCCccCcc-cccccccCCCccccccCccccCCCccCCCCccceeecccCccc
Confidence 99999999999999999999999999753 344555 6778899999999999999999999999999999999999999
Q ss_pred ceeeeccCCCcCCccCCCCccchhhhHhHhcccCceEEEEEeccccceeeeeeeeeeeecCCCCccceeeeeeccccceE
Q 000717 1088 FLARPVLDGHGWDHDCGYDGVNVEHSLAIASRFPAAVTVQVTKDKKEFNLHLDSSIAAKLGENGSSMAGFDIQNVGKQLA 1167 (1334)
Q Consensus 1088 ~l~Rpvld~~gwDHd~G~dg~n~e~~~~~~~~~p~s~~~Qv~KdKk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~ 1167 (1334)
||||||||||||||||||||||+|++++|+++|||+++||||||||||+||||||+||||++++|+|+||||||+|||||
T Consensus 517 ~l~rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~~~q~~kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~ 596 (763)
T TIGR00993 517 LLTRPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASVTVQVTKDKKDFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLA 596 (763)
T ss_pred eeEeecccCCCCccccCcCcccHHHHHHHHhcCcceEEEEEeechhhceeeeeeeeeeecCCCcceeeeeehhhhchheE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccccccccccccceeEEeecceeeeccccceeeeeccceEEEeecceeeecCCcccccceeEEeccCCCcCCc
Q 000717 1168 YILRGETKFKNFKRNKTAIGASVTFLGENVATGLKLEDQIALGKRLMLVGSTGTIRSQGDSAYGANLEMKLREADFPIGQ 1247 (1334)
Q Consensus 1168 yt~r~etk~kn~k~nkt~~G~s~t~~g~~~~~G~K~Ed~i~vgkr~~lv~~~G~m~~~gd~Ayg~~~e~~lr~~dyP~~~ 1247 (1334)
||+||||||||||||||+||+|+||||++|++|+||||+|+|||||+||+|+|+|+++||+|||||||||||++|||++|
T Consensus 597 yt~r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~Ed~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp~~~ 676 (763)
T TIGR00993 597 YTVRGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPLGQ 676 (763)
T ss_pred EEEeccceecccccccccceeEEEEecceeeeeeeehheeeeccceEEEEecceeeccCcccccceeEEEeecCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeeecCceeeeecccccccccccceeEEEEcccccccccEEEEecchhhhHHHHHhHHHHHHHHHhhcCCCC
Q 000717 1248 DQSSLGLSLVKWRGDLALGANLQSQFSVGRSSKMAIRAGLNNKLSGQISVRTSSSDQLQIALLGILPVAMTIYKSIRPGA 1327 (1334)
Q Consensus 1248 ~~~tl~~s~~~~~~d~~lg~nlqsqf~~gr~s~~~~~~~lNnk~~Gqi~ir~ssse~~qial~~~~pi~~~l~~~~~~~~ 1327 (1334)
+++|||||+|+|||||||||||||||++||+|+|++|||||||++||||||+||||||||||||+|||+++||+|++|++
T Consensus 677 ~~~tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~~~lnn~~~Gqi~ir~~sse~~~ial~~~~~~~~~l~~~~~~~~ 756 (763)
T TIGR00993 677 DQSSLGLSLVDWRGDLALGANIQSQVSIGRSSKLAARAGLNNKGSGQISVRTSSSDQLQIALVAILPLAKKIYKYYYPQT 756 (763)
T ss_pred CcchhceeeeccccceeeeccceeeecccCCceEEEEecccCcccceEEEEeccHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 000717 1328 SENYSMY 1334 (1334)
Q Consensus 1328 ~~~~~~~ 1334 (1334)
.++||+|
T Consensus 757 ~~~~~~~ 763 (763)
T TIGR00993 757 TENYSQY 763 (763)
T ss_pred CcccccC
Confidence 9999999
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=5.1e-127 Score=1023.23 Aligned_cols=272 Identities=71% Similarity=1.120 Sum_probs=270.5
Q ss_pred CCCcccccCCCCCCCCCCCCCCCcceeeeccCCCcceeeeccCCCcCCccCCCCccchhhhHhHhcccCceEEEEEeccc
Q 000717 1053 SSAAVPVPLPDMVLPQSFDGDNPAYRYRFLEPNSQFLARPVLDGHGWDHDCGYDGVNVEHSLAIASRFPAAVTVQVTKDK 1132 (1334)
Q Consensus 1053 ~~~~~~vp~pd~~lp~sFDsD~p~~rYR~L~~~~q~l~Rpvld~~gwDHd~G~dg~n~e~~~~~~~~~p~s~~~Qv~KdK 1132 (1334)
.|++||||||||+||||||||||+|||||||+++|||||||||||||||||||||||+|++++|+++||++++|||||||
T Consensus 2 ~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KDK 81 (273)
T PF11886_consen 2 GPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKDK 81 (273)
T ss_pred CCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEech
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeeeeeeeeeecCCCCccceeeeeeccccceEEEeecccccccccccccccceeEEeecceeeeccccceeeeeccc
Q 000717 1133 KEFNLHLDSSIAAKLGENGSSMAGFDIQNVGKQLAYILRGETKFKNFKRNKTAIGASVTFLGENVATGLKLEDQIALGKR 1212 (1334)
Q Consensus 1133 k~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~yt~r~etk~kn~k~nkt~~G~s~t~~g~~~~~G~K~Ed~i~vgkr 1212 (1334)
|||+||+|||+||||++++|+|+||||||+||||+||+||||||||||||||+||+|+||||++|++|+||||+|+||||
T Consensus 82 kd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgkr 161 (273)
T PF11886_consen 82 KDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGKR 161 (273)
T ss_pred hheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecceeeecCCcccccceeEEeccCCCcCCcccccceeeeeeecCceeeeecccccccccccceeEEEEccccccc
Q 000717 1213 LMLVGSTGTIRSQGDSAYGANLEMKLREADFPIGQDQSSLGLSLVKWRGDLALGANLQSQFSVGRSSKMAIRAGLNNKLS 1292 (1334)
Q Consensus 1213 ~~lv~~~G~m~~~gd~Ayg~~~e~~lr~~dyP~~~~~~tl~~s~~~~~~d~~lg~nlqsqf~~gr~s~~~~~~~lNnk~~ 1292 (1334)
||||+|+|+|+++||+||||||||+||++|||++|+++|||||+|+|||||||||||||||++||+|+|++|||||||++
T Consensus 162 lklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~~ 241 (273)
T PF11886_consen 162 LKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKGT 241 (273)
T ss_pred EEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEecchhhhHHHHHhHHHHHHHHHhhcC
Q 000717 1293 GQISVRTSSSDQLQIALLGILPVAMTIYKSIR 1324 (1334)
Q Consensus 1293 Gqi~ir~ssse~~qial~~~~pi~~~l~~~~~ 1324 (1334)
||||||+||||||||||+|+|||+++||+|++
T Consensus 242 Gqisik~sSSe~lqIALi~~vpi~~~l~~r~~ 273 (273)
T PF11886_consen 242 GQISIKTSSSEQLQIALIGLVPIARSLLRRLR 273 (273)
T ss_pred ceEEEEecchHhHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=1.2e-37 Score=338.05 Aligned_cols=240 Identities=66% Similarity=1.041 Sum_probs=212.5
Q ss_pred HHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 668 LDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 668 LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
+++....+.+.+++..+.+..+++|+|+|++|||||||+|+|+|...+.++.+.++|+.+..+...++|.+++|||||||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl 89 (249)
T cd01853 10 PDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred cHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 57777778888888888888999999999999999999999999988888888888998888888899999999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCC
Q 000717 748 KSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSG 827 (1334)
Q Consensus 748 ~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G 827 (1334)
.+........+.++..+.+++..+++|++|||++++..+....|..+++.|++.||..+|+++|||+||+|.++|+++++
T Consensus 90 ~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~ 169 (249)
T cd01853 90 LESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNG 169 (249)
T ss_pred CcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCC
Confidence 98754344556778888889988889999999999876655568899999999999999999999999999999999999
Q ss_pred CCCcHHHHHHhhhHHHHHHHHHhccceeecCcCcCCcccccccCccccccCCCceecCCCCCChHHHHHhHHHHHHHHHH
Q 000717 828 SPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKILSEA 907 (1334)
Q Consensus 828 ~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNnkd~nPveLVENIP~CvKN~~gE~VLPNG~dW~~~LLlLCys~Kmf~eA 907 (1334)
.|.+++.+...+.+.++++|++..+.. ...+|+.|+||+|.|.+|..||+|||||+.|+++|+++||..+++.+|
T Consensus 170 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~~~~~ 244 (249)
T cd01853 170 TPFSYDRFVAQRSHIVQQAIQQAAGDP-----RLENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKLLSEA 244 (249)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhccCc-----cccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhcccc
Confidence 999999998888888888887776433 345799999999999999999999999999999999999999999988
Q ss_pred hhhcC
Q 000717 908 SSLAK 912 (1334)
Q Consensus 908 e~LLk 912 (1334)
..+++
T Consensus 245 ~~~~~ 249 (249)
T cd01853 245 NILLD 249 (249)
T ss_pred ccccC
Confidence 87653
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=100.00 E-value=1.5e-35 Score=330.34 Aligned_cols=248 Identities=35% Similarity=0.579 Sum_probs=205.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
...++|+|+|++|||||||+|+|+|+..+.++.+.+.|..+......++|+++.||||||+.+.. ..++.....++.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHH
Confidence 46799999999999999999999999888887776666665555666789999999999999763 233445566777
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHH
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQS 846 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQL 846 (1334)
++..+++|+||||++++..+....|..+++.|++.||..+|+++||||||+|.++|++ .+|++|+.++++.||++
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~~e~fv~~~~~~lq~~ 187 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LEYNDFFSKRSEALLRV 187 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CCHHHHHHhcHHHHHHH
Confidence 7777789999999988765444468999999999999999999999999999998876 79999999999999999
Q ss_pred HHHhccceeecCcCcCCcccccccCccccccCCCceecCCCCCChHHHHHhHHHHHHH-----HHHhhhcCCCccccccc
Q 000717 847 IGQAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKIL-----SEASSLAKPQESFDHRK 921 (1334)
Q Consensus 847 IeQcgGRy~vfNnkd~nPveLVENIP~CvKN~~gE~VLPNG~dW~~~LLlLCys~Kmf-----~eAe~LLk~q~~~~~~k 921 (1334)
|+++.+..++.....++|+.|+||+|+|.+|..||+|||||+.|+++|+........- ...+.++...+++..+|
T Consensus 188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (313)
T TIGR00991 188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMKEITEVISNGSKPIHVDKKLIDGPNPNNRGK 267 (313)
T ss_pred HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHHHHHHHHhCCCCCeEecHHHccCCCCCcccc
Confidence 9999998887666667899999999999999999999999999999999653222111 11345666777888888
Q ss_pred cccccccCCChhHHHHhhhhccCCCCC
Q 000717 922 LFGFRVRSPPLPYLLSWLLQSRTHPKL 948 (1334)
Q Consensus 922 ~fg~~~r~ppLp~Lls~llq~r~~~k~ 948 (1334)
+| .||.++++++|..++-.++
T Consensus 268 ~~------~~~~~~~~~~~~~~~~~~~ 288 (313)
T TIGR00991 268 MF------IPLIFAVQYLLVVKPIRRA 288 (313)
T ss_pred cH------HHHHHHHHHHhhhHHHHHH
Confidence 87 7999999999987655443
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=327.76 Aligned_cols=237 Identities=24% Similarity=0.321 Sum_probs=196.6
Q ss_pred ccccHHHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCch
Q 000717 536 ELFDSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSE 615 (1334)
Q Consensus 536 elFdsaalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsE 615 (1334)
+-|...+.++.+.|+. ++|++||+||+++|+|++|+.+|.+||+. +||++||+ ||+|
T Consensus 67 ~~l~~~i~~Qa~~Ai~-------------eADvilfvVD~~~Git~~D~~ia~~Lr~~------~kpviLvv----NK~D 123 (444)
T COG1160 67 DELQELIREQALIAIE-------------EADVILFVVDGREGITPADEEIAKILRRS------KKPVILVV----NKID 123 (444)
T ss_pred hHHHHHHHHHHHHHHH-------------hCCEEEEEEeCCCCCCHHHHHHHHHHHhc------CCCEEEEE----Eccc
Confidence 6688889999999997 89999999999999999999999999965 79999999 8888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhh-hhhHhhhccccCccEEEE
Q 000717 616 EEKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTAL-QLEAEEKDDLNFTLNILV 694 (1334)
Q Consensus 616 e~ke~leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~-e~eae~~e~l~~~LRIvL 694 (1334)
..+. +....+| |+||+.. ++++||.||.|+++| +|++...++ .++.+..+ ...+++|+|
T Consensus 124 ~~~~-----e~~~~ef----yslG~g~--------~~~ISA~Hg~Gi~dL--ld~v~~~l~~~e~~~~~~-~~~~ikiai 183 (444)
T COG1160 124 NLKA-----EELAYEF----YSLGFGE--------PVPISAEHGRGIGDL--LDAVLELLPPDEEEEEEE-ETDPIKIAI 183 (444)
T ss_pred Cchh-----hhhHHHH----HhcCCCC--------ceEeehhhccCHHHH--HHHHHhhcCCcccccccc-cCCceEEEE
Confidence 7632 2233444 7999965 389999999999999 699998874 22111111 136899999
Q ss_pred EeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHhhCCC
Q 000717 695 LGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCAP 773 (1334)
Q Consensus 695 VGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~-i~d~~~ekIlreIkkaIkkcgp 773 (1334)
+|+||||||||+|+|+|+++..+++.+++|++.+...++++++++.+|||+|++.+. +.+..+........+++.. .
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~--a 261 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIER--A 261 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhh--c
Confidence 999999999999999999999999999999999999999999999999999999873 4333344433444466664 4
Q ss_pred CEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCC
Q 000717 774 DIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 774 DVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepD 823 (1334)
++|++|+|+.....+ ||++++..+. +..+++|||+||||.++++
T Consensus 262 ~vvllviDa~~~~~~-qD~~ia~~i~-----~~g~~~vIvvNKWDl~~~~ 305 (444)
T COG1160 262 DVVLLVIDATEGISE-QDLRIAGLIE-----EAGRGIVIVVNKWDLVEED 305 (444)
T ss_pred CEEEEEEECCCCchH-HHHHHHHHHH-----HcCCCeEEEEEccccCCch
Confidence 999999999998766 7999998887 5679999999999998863
No 6
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.95 E-value=3.9e-28 Score=256.35 Aligned_cols=195 Identities=32% Similarity=0.471 Sum_probs=151.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceec-cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIH-AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vs-s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
|||+|+|++|+||||++|+|+|...+.+. ...++|+.|......++|+.|+|||||||.+.... .+.+.+.|.+++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~---~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGS---DEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEE---HHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCccc---HHHHHHHHHHHH
Confidence 68999999999999999999999988876 34578889999999999999999999999887643 456677777777
Q ss_pred hhC--CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhh-hHHHHH
Q 000717 769 KKC--APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQR-SHVVQQ 845 (1334)
Q Consensus 769 kkc--gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqr-s~~LQQ 845 (1334)
..| +||+||||+++++++. .+..+++.+.++||+.+|+++|||||++|.+.++ .+++|+++. ...|++
T Consensus 78 ~~~~~g~ha~llVi~~~r~t~--~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRFTE--EDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQE 148 (212)
T ss_dssp HHTTT-ESEEEEEEETTB-SH--HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecCcchH--HHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHhH
Confidence 655 5899999999997765 4899999999999999999999999999988763 499999954 367999
Q ss_pred HHHHhccceeecCcC----cC---CcccccccCccccccCCCceecCCCCCChHHHHHhHHHHHHHHHHhhhcC
Q 000717 846 SIGQAVGDLRLMNPS----LM---NPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKILSEASSLAK 912 (1334)
Q Consensus 846 LIeQcgGRy~vfNnk----d~---nPveLVENIP~CvKN~~gE~VLPNG~dW~~~LLlLCys~Kmf~eAe~LLk 912 (1334)
+|++|++|||+||++ .. .-.+|++.|+..++ .|++ .||+++|+++|+...+
T Consensus 149 li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~--------~n~g--------~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 149 LIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQ--------ENGG--------QYYSNEMFEEAEERKE 206 (212)
T ss_dssp HHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHH--------HTTT--------T--B-HHHHHHHHCCH
T ss_pred HhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHH--------HcCC--------CCCChHHHHHHHHHHH
Confidence 999999999999987 11 12368888875444 4555 6999999999987544
No 7
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.93 E-value=1e-25 Score=233.31 Aligned_cols=160 Identities=24% Similarity=0.340 Sum_probs=134.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceecc-CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHA-FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss-~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
+||+|+|+||+|||||+|+|+|+..+.+.. .+++|+.|+.....+.|+++.||||||+.+..... ..+...+.+++
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~---~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP---EQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh---HHHHHHHHHHH
Confidence 589999999999999999999998876653 45788889988888999999999999999874322 23334444444
Q ss_pred hh--CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHH
Q 000717 769 KK--CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQS 846 (1334)
Q Consensus 769 kk--cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQL 846 (1334)
.. .++|+||||++++.++. .|..+++.+++.||..+|+++||||||||.+.+ .++++|+......|+++
T Consensus 78 ~~~~~g~~~illVi~~~~~t~--~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~-------~~~~~~~~~~~~~l~~l 148 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGRFTE--EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG-------GTLEDYLENSCEALKRL 148 (196)
T ss_pred HhcCCCCEEEEEEEECCCcCH--HHHHHHHHHHHHhChHhHhcEEEEEECccccCC-------CcHHHHHHhccHHHHHH
Confidence 43 36899999999988554 589999999999999999999999999999865 37999999887899999
Q ss_pred HHHhccceeecCcCc
Q 000717 847 IGQAVGDLRLMNPSL 861 (1334)
Q Consensus 847 IeQcgGRy~vfNnkd 861 (1334)
+++|++|||+|++..
T Consensus 149 ~~~c~~r~~~f~~~~ 163 (196)
T cd01852 149 LEKCGGRYVAFNNKA 163 (196)
T ss_pred HHHhCCeEEEEeCCC
Confidence 999999999998764
No 8
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=3e-22 Score=229.33 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=163.5
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.++++||+||++.|+++.|..++.+||+. ++|+++++ ||+|...... ... .++++|+.+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~~------~~piilVv----NK~D~~~~~~-----~~~----~~~~lg~~~-- 136 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRKS------GKPVILVA----NKIDGKKEDA-----VAA----EFYSLGFGE-- 136 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHh------CCCEEEEE----ECccCCcccc-----cHH----HHHhcCCCC--
Confidence 67899999999999999999999999976 68999998 8888543211 112 246889854
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCce
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT 724 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT 724 (1334)
++.+||.||.|+.+| ++.+...++...... ......++|+++|++|+|||||+|+|++.+...++..+++|
T Consensus 137 ------~~~vSa~~g~gv~~l--l~~i~~~l~~~~~~~-~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt 207 (429)
T TIGR03594 137 ------PIPISAEHGRGIGDL--LDAILELLPEEEEEE-EEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTT 207 (429)
T ss_pred ------eEEEeCCcCCChHHH--HHHHHHhcCcccccc-cccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCce
Confidence 378999999999999 576666554322111 11234689999999999999999999999888888888888
Q ss_pred eeEEEEEEEeCCeEEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc
Q 000717 725 TSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG 803 (1334)
Q Consensus 725 t~~~~~~~evdGrkVtLIDTPGL~ds~-i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG 803 (1334)
++.......++++.+.||||||+.+.. .....+........+++.. +|++|+|+++...... ++..+++.+.+
T Consensus 208 ~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~ilV~D~~~~~~~-~~~~~~~~~~~--- 281 (429)
T TIGR03594 208 RDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER--ADVVLLVLDATEGITE-QDLRIAGLILE--- 281 (429)
T ss_pred ECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHh--CCEEEEEEECCCCccH-HHHHHHHHHHH---
Confidence 888877888889999999999998763 2222222322333345553 5999999999876543 56666666542
Q ss_pred ccCCceEEEEEeccCCC
Q 000717 804 TQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 804 ~ea~K~tIIVLTK~D~L 820 (1334)
..+++|+|+||||++
T Consensus 282 --~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 282 --AGKALVIVVNKWDLV 296 (429)
T ss_pred --cCCcEEEEEECcccC
Confidence 347999999999987
No 9
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.5e-21 Score=222.75 Aligned_cols=218 Identities=24% Similarity=0.309 Sum_probs=161.8
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||+||++.|++..|..++.|||+. ++|+++++ ||+|.... .....+| +++|+..
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~------~~piilv~----NK~D~~~~-----~~~~~~~----~~lg~~~-- 138 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS------NKPVILVV----NKVDGPDE-----EADAYEF----YSLGLGE-- 138 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCcEEEEE----ECccCccc-----hhhHHHH----HhcCCCC--
Confidence 67899999999999999999999999976 57999998 89885321 1111222 5788753
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCce
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT 724 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT 724 (1334)
++++||.+|.|+.++ ++.+.......... ......++|+|+|++|+|||||+|+|++..+..++..+++|
T Consensus 139 ------~~~iSa~~g~gv~~l--~~~I~~~~~~~~~~--~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt 208 (435)
T PRK00093 139 ------PYPISAEHGRGIGDL--LDAILEELPEEEEE--DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTT 208 (435)
T ss_pred ------CEEEEeeCCCCHHHH--HHHHHhhCCccccc--cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCce
Confidence 368999999999998 45555422211111 11235799999999999999999999999988888888999
Q ss_pred eeEEEEEEEeCCeEEEEEeCCCCCCCCc-chhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc
Q 000717 725 TSVKEIVGTVDGVKIRVIDTPGLKSSGV-EQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG 803 (1334)
Q Consensus 725 t~~~~~~~evdGrkVtLIDTPGL~ds~i-~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG 803 (1334)
+++......+++..+.||||||+.+... ....+........+++.. +|++|+|+++...... ++..+++.+.+
T Consensus 209 ~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~ilViD~~~~~~~-~~~~i~~~~~~--- 282 (435)
T PRK00093 209 RDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER--ADVVLLVIDATEGITE-QDLRIAGLALE--- 282 (435)
T ss_pred EEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH--CCEEEEEEeCCCCCCH-HHHHHHHHHHH---
Confidence 9888777888899999999999987632 222222222333355654 5999999999876543 56777666552
Q ss_pred ccCCceEEEEEeccCCCC
Q 000717 804 TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 804 ~ea~K~tIIVLTK~D~Le 821 (1334)
..+++|||+||||+..
T Consensus 283 --~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 283 --AGRALVIVVNKWDLVD 298 (435)
T ss_pred --cCCcEEEEEECccCCC
Confidence 3589999999999863
No 10
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=9.6e-21 Score=221.93 Aligned_cols=218 Identities=19% Similarity=0.277 Sum_probs=158.7
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++|||||+..|++..+..++.++++. ++|++||+ ||+|..+.. ..... .+.+|+..
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~------~~piilV~----NK~Dl~~~~-----~~~~~----~~~~g~~~-- 175 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRS------GKPVILAA----NKVDDERGE-----ADAAA----LWSLGLGE-- 175 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc------CCCEEEEE----ECccCCccc-----hhhHH----HHhcCCCC--
Confidence 67899999999999999999999999865 68999998 888853211 01112 24677753
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCce
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT 724 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT 724 (1334)
++++||.||.|+.+| ++.+...++..... .......++|+|+|+||||||||+|+|++.....++..+++|
T Consensus 176 ------~~~iSA~~g~gi~eL--~~~i~~~l~~~~~~-~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT 246 (472)
T PRK03003 176 ------PHPVSALHGRGVGDL--LDAVLAALPEVPRV-GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTT 246 (472)
T ss_pred ------eEEEEcCCCCCcHHH--HHHHHhhccccccc-ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc
Confidence 258999999999999 47666665442111 111134689999999999999999999999877778888888
Q ss_pred eeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH--HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHh
Q 000717 725 TSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK--KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNAL 802 (1334)
Q Consensus 725 t~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk--kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiF 802 (1334)
++.....+.+++.++.|+||||++....... ....+..++ .++. .+|++++|+|++..... ++..++..+..
T Consensus 247 ~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~-~~e~~~~~~~~~~i~--~ad~vilV~Da~~~~s~-~~~~~~~~~~~-- 320 (472)
T PRK03003 247 VDPVDSLIELGGKTWRFVDTAGLRRRVKQAS-GHEYYASLRTHAAIE--AAEVAVVLIDASEPISE-QDQRVLSMVIE-- 320 (472)
T ss_pred CCcceEEEEECCEEEEEEECCCccccccccc-hHHHHHHHHHHHHHh--cCCEEEEEEeCCCCCCH-HHHHHHHHHHH--
Confidence 8887777788999999999999975421111 112222222 3344 56999999999876432 46666655542
Q ss_pred cccCCceEEEEEeccCCCC
Q 000717 803 GTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 803 G~ea~K~tIIVLTK~D~Le 821 (1334)
..+++|||+||||+..
T Consensus 321 ---~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 321 ---AGRALVLAFNKWDLVD 336 (472)
T ss_pred ---cCCCEEEEEECcccCC
Confidence 4589999999999864
No 11
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=3e-20 Score=227.57 Aligned_cols=234 Identities=18% Similarity=0.240 Sum_probs=167.7
Q ss_pred cccHHHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchh
Q 000717 537 LFDSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEE 616 (1334)
Q Consensus 537 lFdsaalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe 616 (1334)
-+..+...++..|.. .+|++|||||++.|+++.|..++.+||+. ++|+++++ ||+|.
T Consensus 339 ~~~~~~~~~~~~~~~-------------~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~------~~pvIlV~----NK~D~ 395 (712)
T PRK09518 339 GIDSAIASQAQIAVS-------------LADAVVFVVDGQVGLTSTDERIVRMLRRA------GKPVVLAV----NKIDD 395 (712)
T ss_pred cHHHHHHHHHHHHHH-------------hCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEE----ECccc
Confidence 355555556666654 67899999999999999999999999876 68999998 88885
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhh-ccccCccEEEEE
Q 000717 617 EKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEK-DDLNFTLNILVL 695 (1334)
Q Consensus 617 ~ke~leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~-e~l~~~LRIvLV 695 (1334)
... ......| +++|+.. ++++||.||.|+.+| ++.+...++..+.+.. -.....++|+|+
T Consensus 396 ~~~-----~~~~~~~----~~lg~~~--------~~~iSA~~g~GI~eL--l~~i~~~l~~~~~~~~a~~~~~~~kI~iv 456 (712)
T PRK09518 396 QAS-----EYDAAEF----WKLGLGE--------PYPISAMHGRGVGDL--LDEALDSLKVAEKTSGFLTPSGLRRVALV 456 (712)
T ss_pred ccc-----hhhHHHH----HHcCCCC--------eEEEECCCCCCchHH--HHHHHHhcccccccccccCCCCCcEEEEE
Confidence 321 1111223 4678754 258999999999999 4666665543211110 001245899999
Q ss_pred eecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH--HHHHhhCCC
Q 000717 696 GKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI--KKFTKKCAP 773 (1334)
Q Consensus 696 GkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI--kkaIkkcgp 773 (1334)
|++|||||||+|+|++.+...++..+++|++.......+++.++.||||||+.+...... ....+..+ ..++. .+
T Consensus 457 G~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~-~~e~~~~~r~~~~i~--~a 533 (712)
T PRK09518 457 GRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT-GAEYYSSLRTQAAIE--RS 533 (712)
T ss_pred CCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch-hHHHHHHHHHHHHhh--cC
Confidence 999999999999999998777788888898887777888999999999999976532111 11112222 23344 46
Q ss_pred CEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 774 DIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 774 DVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
|+|++|+|++..... ++..++..+.+ ..+++|||+||||+..
T Consensus 534 dvvilViDat~~~s~-~~~~i~~~~~~-----~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 534 ELALFLFDASQPISE-QDLKVMSMAVD-----AGRALVLVFNKWDLMD 575 (712)
T ss_pred CEEEEEEECCCCCCH-HHHHHHHHHHH-----cCCCEEEEEEchhcCC
Confidence 999999999876543 46666665542 4589999999999864
No 12
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.63 E-value=9.1e-16 Score=157.99 Aligned_cols=122 Identities=21% Similarity=0.357 Sum_probs=93.0
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
++|+++|+||||||||+|+|+|.. ..+++++++|.+.....+.+.+.++.||||||++...... ..+.+ .++++.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s-~ee~v---~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS-EEERV---ARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS-HHHHH---HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC-cHHHH---HHHHHh
Confidence 589999999999999999999997 7789999999999999999999999999999998763221 12222 344555
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDG 824 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDg 824 (1334)
..++|++++|+|++...+ ++.++..+.+ ...|+|+|+||+|.++..+
T Consensus 76 ~~~~D~ii~VvDa~~l~r---~l~l~~ql~e-----~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNLER---NLYLTLQLLE-----LGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp HTSSSEEEEEEEGGGHHH---HHHHHHHHHH-----TTSSEEEEEETHHHHHHTT
T ss_pred hcCCCEEEEECCCCCHHH---HHHHHHHHHH-----cCCCEEEEEeCHHHHHHcC
Confidence 567999999999987543 5666666663 4589999999999876543
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.63 E-value=1.7e-15 Score=168.40 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=105.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.-.|+|+|+||||||||+|+|+|++.+++++.+.+|+.......+.+..++.+||||||..++ ....+.+.+.++..+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk--~~l~~~m~~~a~~sl 83 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK--HALGELMNKAARSAL 83 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc--hHHHHHHHHHHHHHh
Confidence 457999999999999999999999999999999999988888888889999999999999883 345677888888887
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
. .+|+||||++++..... .|..+++.+++ ...|.|+++||.|.+.+
T Consensus 84 ~--dvDlilfvvd~~~~~~~-~d~~il~~lk~-----~~~pvil~iNKID~~~~ 129 (298)
T COG1159 84 K--DVDLILFVVDADEGWGP-GDEFILEQLKK-----TKTPVILVVNKIDKVKP 129 (298)
T ss_pred c--cCcEEEEEEeccccCCc-cHHHHHHHHhh-----cCCCeEEEEEccccCCc
Confidence 7 46999999999984433 47888888874 34699999999999876
No 14
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=3.7e-15 Score=167.28 Aligned_cols=188 Identities=20% Similarity=0.286 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHhc-CCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeec
Q 000717 620 KLEKLQHLRVKFLRLVHRL-GYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKT 698 (1334)
Q Consensus 620 ~leKlq~I~~kF~rl~~RL-Glsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkp 698 (1334)
....++.+..+|.+++..- .....+.+..+.+.|++.+-..--.+|..|..+..++...+... ....+|+|.|.|
T Consensus 102 A~~~i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r~~l~~LP~Id----p~~pTivVaG~P 177 (346)
T COG1084 102 ASKIIEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKARDHLKKLPAID----PDLPTIVVAGYP 177 (346)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCC----CCCCeEEEecCC
Confidence 3445555666666555443 23334566788888887765554455655677776665443322 246899999999
Q ss_pred CCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchh--hHHHHHHHHHHHHhhCCCCEE
Q 000717 699 GVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQG--VNRKVLASIKKFTKKCAPDIV 776 (1334)
Q Consensus 699 GVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~--~~ekIlreIkkaIkkcgpDVV 776 (1334)
|||||||+++|.+. ...+.+++.||+.+...+++.++.+|.+||||||.|+...+. ++...+-.+ +++. ++|
T Consensus 178 NVGKSSlv~~lT~A-kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL-~hl~----~~I 251 (346)
T COG1084 178 NVGKSSLVRKLTTA-KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL-RHLA----GVI 251 (346)
T ss_pred CCcHHHHHHHHhcC-CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH-HHhc----CeE
Confidence 99999999999997 456788999999999999999999999999999999976542 222222222 2333 799
Q ss_pred EEEecCCCc---cCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 777 LYVDRLDSQ---TRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 777 LLVIDad~~---t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
||++|++.. +.+ .+..+++.|...|. .++|+|+||.|....
T Consensus 252 lF~~D~Se~cgy~lE-~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 252 LFLFDPSETCGYSLE-EQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred EEEEcCccccCCCHH-HHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 999998864 333 46778999988776 799999999998754
No 15
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=4.7e-15 Score=141.25 Aligned_cols=116 Identities=20% Similarity=0.318 Sum_probs=88.5
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
||+|+|+||+|||||+|+|++.....++..+++|+........+++..+.|+||||+.+........ .....+.+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~- 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQIS- 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHH-
Confidence 6999999999999999999998778888888899988766777889999999999998764322111 23444555554
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
..|+++||+++..... ..+..++++++ ..+|+++|+||
T Consensus 79 -~~d~ii~vv~~~~~~~-~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 -KSDLIIYVVDASNPIT-EDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp -TESEEEEEEETTSHSH-HHHHHHHHHHH------TTSEEEEEEES
T ss_pred -HCCEEEEEEECCCCCC-HHHHHHHHHHh------cCCCEEEEEcC
Confidence 3599999999777322 23556666662 45899999998
No 16
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=4.3e-15 Score=172.78 Aligned_cols=128 Identities=25% Similarity=0.417 Sum_probs=106.0
Q ss_pred ccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 684 DDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 684 e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
..+...++|+++|+||||||||+|+|+++++++|++.+++||+.....+.++|.++.|+||+|++++. +..++.-++.
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~--d~VE~iGIeR 289 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD--DVVERIGIER 289 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc--cHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999763 3344555566
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.++.++. +|+||||+|++..... .|..++..+ ...+++++|+||.|+..+
T Consensus 290 s~~~i~~--ADlvL~v~D~~~~~~~-~d~~~~~~~------~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 290 AKKAIEE--ADLVLFVLDASQPLDK-EDLALIELL------PKKKPIIVVLNKADLVSK 339 (454)
T ss_pred HHHHHHh--CCEEEEEEeCCCCCch-hhHHHHHhc------ccCCCEEEEEechhcccc
Confidence 6677774 5999999999986332 466666522 345799999999999875
No 17
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.60 E-value=4.1e-15 Score=149.57 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=105.6
Q ss_pred ccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 564 SQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 564 s~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
..+|++||+||++..+++.++.+..+++.. ..++|++++. ||+|-..+ +.+..+...+ .. .+..
T Consensus 7 ~~aD~il~VvD~~~p~~~~~~~i~~~l~~~----~~~~p~ilVl----NKiDl~~~--~~~~~~~~~~----~~-~~~~- 70 (157)
T cd01858 7 DSSDVVIQVLDARDPMGTRCKHVEEYLKKE----KPHKHLIFVL----NKCDLVPT--WVTARWVKIL----SK-EYPT- 70 (157)
T ss_pred hhCCEEEEEEECCCCccccCHHHHHHHHhc----cCCCCEEEEE----EchhcCCH--HHHHHHHHHH----hc-CCcE-
Confidence 367899999999998888888888888753 2257999988 88885321 1111111111 11 1211
Q ss_pred chhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCc
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG 723 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt 723 (1334)
..+++||..+.|...|+ +.+...+... .....++|+++|+||||||||||+|++.....++..+++
T Consensus 71 ------~~~~iSa~~~~~~~~L~--~~l~~~~~~~------~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~ 136 (157)
T cd01858 71 ------IAFHASINNPFGKGSLI--QLLRQFSKLH------SDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGE 136 (157)
T ss_pred ------EEEEeeccccccHHHHH--HHHHHHHhhh------ccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCe
Confidence 13578999999988873 4443322110 012468899999999999999999999999999999898
Q ss_pred eeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 724 TTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 724 Tt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
|+..+.+.. +..+.||||||+
T Consensus 137 T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 137 TKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred eEeEEEEEc---CCCEEEEECcCC
Confidence 887765543 445899999996
No 18
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.58 E-value=8.2e-15 Score=170.11 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=105.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
..|+|+|+||||||||+|+|+|+..+.|++.+++|++.......|.++++.||||+||....- +...+.+.++...++.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~Ai~ 82 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIAIE 82 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999986431 2345566677777777
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+|++|||+|....... .|..+++++. ..++|+|+|+||+|...
T Consensus 83 --eADvilfvVD~~~Git~-~D~~ia~~Lr-----~~~kpviLvvNK~D~~~ 126 (444)
T COG1160 83 --EADVILFVVDGREGITP-ADEEIAKILR-----RSKKPVILVVNKIDNLK 126 (444)
T ss_pred --hCCEEEEEEeCCCCCCH-HHHHHHHHHH-----hcCCCEEEEEEcccCch
Confidence 46999999999876544 5888888887 45699999999999864
No 19
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=1.1e-13 Score=151.64 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=90.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+|+|+||||||||+|+|+|...+.+++.+++|+.........++.++.|+||||+..... ...+.+.+.+..++.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l~- 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAIG- 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHHh-
Confidence 68999999999999999999998888888888888766555555677899999999976521 123344555556666
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+|+++||+|++..... +..+++.+.. ..+|+|+|+||+|+..
T Consensus 79 -~aDvvl~VvD~~~~~~~--~~~i~~~l~~-----~~~p~ilV~NK~Dl~~ 121 (270)
T TIGR00436 79 -GVDLILFVVDSDQWNGD--GEFVLTKLQN-----LKRPVVLTRNKLDNKF 121 (270)
T ss_pred -hCCEEEEEEECCCCCch--HHHHHHHHHh-----cCCCEEEEEECeeCCC
Confidence 46999999999876542 3445555542 3479999999999864
No 20
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.51 E-value=9.9e-14 Score=139.60 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCCCccccccc-CCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q 000717 567 GSKLFSVERPAGLGTSLRTLK-PAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPEDS 645 (1334)
Q Consensus 567 dviLFvVD~raGLt~aD~eiA-~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N~ 645 (1334)
|++|+++|++...+..+..+. ..++.. ++|++++. ||+|--.+ +.+..+...+ .+.....
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~------~~p~IiVl----NK~Dl~~~--~~~~~~~~~~----~~~~~~~--- 61 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEK------GKKLILVL----NKADLVPK--EVLRKWLAYL----RHSYPTI--- 61 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcC------CCCEEEEE----echhcCCH--HHHHHHHHHH----HhhCCce---
Confidence 689999999998888877766 344433 57899988 88885211 1111111111 2232221
Q ss_pred hhhhhhhcccccccCCchhhhcHHHHHHHhhhhh--HhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCc
Q 000717 646 LVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLE--AEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG 723 (1334)
Q Consensus 646 vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~e--ae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt 723 (1334)
+..+||.++.|+..|. +.+........ ...........+|+++|.|||||||++|+|++...+.++..+++
T Consensus 62 -----ii~vSa~~~~gi~~L~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~ 134 (155)
T cd01849 62 -----PFKISATNGQGIEKKE--SAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGT 134 (155)
T ss_pred -----EEEEeccCCcChhhHH--HHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCc
Confidence 3578999999998883 43332221110 01111134578999999999999999999999988888887788
Q ss_pred eeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 724 TTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 724 Tt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
|+..+.... +..+.|||||||
T Consensus 135 t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 135 TTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred ccceEEEEe---cCCEEEEECCCC
Confidence 887766543 356899999997
No 21
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.50 E-value=3.3e-13 Score=149.75 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHH
Q 000717 541 AALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTK 620 (1334)
Q Consensus 541 aalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~ 620 (1334)
.++.++.++.. ++|++|+++|+|..++..+..+...++ ++|++++. ||+|-...
T Consensus 13 k~~~~l~~~l~-------------~aDvIL~VvDar~p~~~~~~~l~~~~~--------~kp~iiVl----NK~DL~~~- 66 (287)
T PRK09563 13 KARREIKENLK-------------LVDVVIEVLDARIPLSSENPMIDKIIG--------NKPRLLIL----NKSDLADP- 66 (287)
T ss_pred HHHHHHHHHhh-------------hCCEEEEEEECCCCCCCCChhHHHHhC--------CCCEEEEE----EchhcCCH-
Confidence 34556666665 789999999999999888877766553 36888887 88884211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHh--hhccccCccEEEEEeec
Q 000717 621 LEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAE--EKDDLNFTLNILVLGKT 698 (1334)
Q Consensus 621 leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae--~~e~l~~~LRIvLVGkp 698 (1334)
..++.+...| ...|.. +..+|+.++.|+..|+ ..+...++..... ........++|+|+|.|
T Consensus 67 -~~~~~~~~~~----~~~~~~---------vi~vSa~~~~gi~~L~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~p 130 (287)
T PRK09563 67 -EVTKKWIEYF----EEQGIK---------ALAINAKKGQGVKKIL--KAAKKLLKEKNERRKAKGMRPRAIRAMIIGIP 130 (287)
T ss_pred -HHHHHHHHHH----HHcCCe---------EEEEECCCcccHHHHH--HHHHHHHHHHHhhhhhcccCcCceEEEEECCC
Confidence 1122221112 233321 2578999999988883 4444433322110 11112356899999999
Q ss_pred CCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 699 GVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 699 GVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
||||||+||+|++...+.+++.+++|+..+.+.. +..+.||||||+..+...
T Consensus 131 nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPGi~~~~~~ 182 (287)
T PRK09563 131 NVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL---GKGLELLDTPGILWPKLE 182 (287)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe---CCcEEEEECCCcCCCCCC
Confidence 9999999999999988888888899988765443 456899999999877543
No 22
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.49 E-value=3.8e-13 Score=148.38 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHH
Q 000717 541 AALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTK 620 (1334)
Q Consensus 541 aalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~ 620 (1334)
.++.++.+++. .+|++|+++|++..+++.+..+...++ ++|++++. ||+|-...
T Consensus 10 k~~~~~~~~l~-------------~aDvVl~V~Dar~p~~~~~~~i~~~l~--------~kp~IiVl----NK~DL~~~- 63 (276)
T TIGR03596 10 KARREIKEKLK-------------LVDVVIEVLDARIPLSSRNPMIDEIRG--------NKPRLIVL----NKADLADP- 63 (276)
T ss_pred HHHHHHHHHHh-------------hCCEEEEEEeCCCCCCCCChhHHHHHC--------CCCEEEEE----EccccCCH-
Confidence 35556666665 779999999999999988887776653 46888888 88884211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHh--hhccccCccEEEEEeec
Q 000717 621 LEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAE--EKDDLNFTLNILVLGKT 698 (1334)
Q Consensus 621 leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae--~~e~l~~~LRIvLVGkp 698 (1334)
...+.+...+ ...|.. +..+|+.++.|+..|+ ..+...++..... ........++++|+|.|
T Consensus 64 -~~~~~~~~~~----~~~~~~---------vi~iSa~~~~gi~~L~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~ 127 (276)
T TIGR03596 64 -AVTKQWLKYF----EEKGIK---------ALAINAKKGKGVKKII--KAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIP 127 (276)
T ss_pred -HHHHHHHHHH----HHcCCe---------EEEEECCCcccHHHHH--HHHHHHHHHhhhhhhhccCCCCCeEEEEECCC
Confidence 1122111111 233422 3578999999998883 4444443322111 01112346899999999
Q ss_pred CCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 699 GVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 699 GVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
|||||||||+|++.....++..+++|+..+.+.. +.++.||||||+..+...
T Consensus 128 nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~~~~~~~ 179 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL---SDGLELLDTPGILWPKFE 179 (276)
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeecceEEEEe---CCCEEEEECCCcccCCCC
Confidence 9999999999999988888888888887765544 346899999999877543
No 23
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.47 E-value=1.3e-13 Score=143.38 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCCCcccccccCC--CCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 567 GSKLFSVERPAGLGTSLRTLKPA--PRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 567 dviLFvVD~raGLt~aD~eiA~~--LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
|++||+||++..+++.++.+... ++.. ++|++++. ||+|--.. +.+..+...|......+.+....
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~------~kp~IlVl----NK~DL~~~--~~l~~~~~~~~~~~~~~~~~~~~ 68 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGG------NKKLVLVL----NKIDLVPK--ENVEKWLKYLRREFPTVAFKAST 68 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccC------CCCEEEEE----ehhhcCCH--HHHHHHHHHHHhhCCEEEEEecc
Confidence 68999999999999999888877 5443 58999998 88885321 22333333332211111111000
Q ss_pred h----hhh--------hhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCC
Q 000717 645 S----LVG--------QVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 645 ~----vLa--------QvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
. .+. ....-+++..+.|...|+ ..+.+. .........++++++|.||||||||||+|++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~------~~~~~~--~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 69 QSQKKNLGQKSVKVEAASADLLRSSVCFGADCLL------KLLKNY--SRNKDIKTSITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred cccccchhhcccccchhhhhhhhhccccCHHHHH------HHHHHH--hhccccccCcEEEEEcCCCCCHHHHHHHHhCc
Confidence 0 000 000112333333333331 111110 01112345689999999999999999999999
Q ss_pred CcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 713 EKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 713 e~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
..+.+++.+++|+..+.+.. +.++.|+||||+
T Consensus 141 ~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 141 RACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred ccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 99899999899987776654 456899999996
No 24
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.7e-13 Score=158.12 Aligned_cols=136 Identities=22% Similarity=0.345 Sum_probs=104.0
Q ss_pred hccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 683 KDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 683 ~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
.+.+..+++|+|+|+||||||||+|+|..+++.+|++.+++|++.....++++|.+++|+||+||+.... +..+..-++
T Consensus 262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~-~~iE~~gI~ 340 (531)
T KOG1191|consen 262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN-DGIEALGIE 340 (531)
T ss_pred HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC-ChhHHHhHH
Confidence 3456678999999999999999999999999999999999999999999999999999999999998422 223344445
Q ss_pred HHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHH---hccc----CCceEEEEEeccCCCCC
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA---LGTQ----IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~Iqei---FG~e----a~K~tIIVLTK~D~Lep 822 (1334)
..++.+. ++|+|++|+++.....+ +|..+.+.+... +... ..++.|++.||.|...+
T Consensus 341 rA~k~~~--~advi~~vvda~~~~t~-sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 341 RARKRIE--RADVILLVVDAEESDTE-SDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHHHHHh--hcCEEEEEecccccccc-cchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 5555555 46999999999543322 466666655532 1111 12678899999998775
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.47 E-value=1e-12 Score=134.37 Aligned_cols=127 Identities=19% Similarity=0.212 Sum_probs=87.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCC-cceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEE-KTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee-~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
...++|+|+|.+|+|||||+|+|++.. ...++...++|..+..+.. + ..+.|+||||+............+...+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 457899999999999999999999975 4555666667776654433 2 47899999998765433222233333344
Q ss_pred HHHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 766 KFTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.++..+ ..|++|+|+++...... .+..+++.+. ...+|+|+|+||+|+..+
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~-~~~~~~~~~~-----~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKE-LDLEMLEWLR-----ERGIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCH-HHHHHHHHHH-----HcCCCEEEEEECcccCCH
Confidence 455433 36899999998764332 3555555553 235799999999998643
No 26
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.46 E-value=7.1e-13 Score=135.67 Aligned_cols=163 Identities=19% Similarity=0.135 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHH
Q 000717 541 AALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTK 620 (1334)
Q Consensus 541 aalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~ 620 (1334)
.++.++..++. .+|++||++|++.+++..+..+...++ ++|++++. ||+|--.+
T Consensus 8 ~~~~~~~~~i~-------------~aD~il~v~D~~~~~~~~~~~i~~~~~--------~k~~ilVl----NK~Dl~~~- 61 (171)
T cd01856 8 KALRQIKEKLK-------------LVDLVIEVRDARIPLSSRNPLLEKILG--------NKPRIIVL----NKADLADP- 61 (171)
T ss_pred HHHHHHHHHHh-------------hCCEEEEEeeccCccCcCChhhHhHhc--------CCCEEEEE----ehhhcCCh-
Confidence 34555666665 789999999999988887776655443 46778887 88884211
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhh-HhhhccccCccEEEEEeecC
Q 000717 621 LEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLE-AEEKDDLNFTLNILVLGKTG 699 (1334)
Q Consensus 621 leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~e-ae~~e~l~~~LRIvLVGkpG 699 (1334)
+.+..+. ..++.... -+..+|+.++.|+..| ++.+...++... ..........++++++|.+|
T Consensus 62 -~~~~~~~-----~~~~~~~~--------~vi~iSa~~~~gi~~L--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 125 (171)
T cd01856 62 -KKTKKWL-----KYFESKGE--------KVLFVNAKSGKGVKKL--LKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPN 125 (171)
T ss_pred -HHHHHHH-----HHHHhcCC--------eEEEEECCCcccHHHH--HHHHHHHHHHHhhhhhcccCCCCeEEEEECCCC
Confidence 1111111 11122111 1357899999998888 344444332111 01111223457999999999
Q ss_pred CChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCC
Q 000717 700 VGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLK 748 (1334)
Q Consensus 700 VGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ 748 (1334)
||||||+|+|++.....++..+++|+..+.+... ..+.||||||+.
T Consensus 126 vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~~ 171 (171)
T cd01856 126 VGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGIL 171 (171)
T ss_pred CCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCCC
Confidence 9999999999998777777777888877665542 568999999984
No 27
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=3.7e-13 Score=148.85 Aligned_cols=161 Identities=20% Similarity=0.329 Sum_probs=118.1
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..+++|+++|+||+|||||||+||..+...++..+.+|.........+++..++|+||||+.+....+ .+....++.
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D---~~~r~~~~d 113 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD---AEHRQLYRD 113 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh---HHHHHHHHH
Confidence 35799999999999999999999987777776655555544555556678889999999999874332 233444555
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCC-----CCCCcHHHHHHhhhH
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPS-----GSPLSYEIFVAQRSH 841 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~-----G~P~S~EefLkqrs~ 841 (1334)
.+. +.|++|++++++..... .|.++++.+.- ....+++|+|+|.+|...|-..| .+..++++|+.++..
T Consensus 114 ~l~--~~DLvL~l~~~~draL~-~d~~f~~dVi~---~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 114 YLP--KLDLVLWLIKADDRALG-TDEDFLRDVII---LGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred Hhh--hccEEEEeccCCCcccc-CCHHHHHHHHH---hccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 555 45899999999877654 57777776652 22338999999999999883222 233478999999888
Q ss_pred HHHHHHHHhccceee
Q 000717 842 VVQQSIGQAVGDLRL 856 (1334)
Q Consensus 842 ~LQQLIeQcgGRy~v 856 (1334)
.+.+.|+...+-|.+
T Consensus 188 ~~~~~~q~V~pV~~~ 202 (296)
T COG3596 188 ALGRLFQEVKPVVAV 202 (296)
T ss_pred HHHHHHhhcCCeEEe
Confidence 899998886655533
No 28
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=5.4e-13 Score=142.17 Aligned_cols=126 Identities=21% Similarity=0.239 Sum_probs=101.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCC-cceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEE-KTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee-~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
...-|+++||+|||||||||+|+++. .+.++..|+.|+....+.. ++ .+.+||.||++-........+++-..+.+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--DD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--cC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 34679999999999999999999976 4788888888887765544 33 37899999999887766666677778888
Q ss_pred HHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++... ..-.+++++|+.....+ .|+.+++++. ....+++||+||+|.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~-~D~em~~~l~-----~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKD-LDREMIEFLL-----ELGIPVIVVLTKADKLKK 150 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcH-HHHHHHHHHH-----HcCCCeEEEEEccccCCh
Confidence 88763 35678888888877654 5889999987 456899999999999875
No 29
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.46 E-value=1.3e-12 Score=144.76 Aligned_cols=177 Identities=17% Similarity=0.234 Sum_probs=109.1
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccC-------CCceee--EEEEEEEeCC--eEEEEEeCCCCCCCCcc--
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAF-------EPGTTS--VKEIVGTVDG--VKIRVIDTPGLKSSGVE-- 753 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~-------~gtTt~--~~~~~~evdG--rkVtLIDTPGL~ds~i~-- 753 (1334)
+..++|+|+|.+|+|||||+|+|++......... ...|.. ........+| .+++||||||+.+....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3568999999999999999999999876544321 122322 2233344556 36899999999876321
Q ss_pred --hhhHHHHHHHHHHHH------------hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 754 --QGVNRKVLASIKKFT------------KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 754 --d~~~ekIlreIkkaI------------kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
.....++...+..++ ...++|+|||+++.+.......|..+++.+.+ ..++|+|+||+|.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~ 155 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADT 155 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCc
Confidence 111222222222222 12258999999988754333346777877753 4799999999999
Q ss_pred CCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhccceeecCcCcC------CcccccccCccccccCCC
Q 000717 820 APPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNPSLM------NPVSLVENHPACRKNRDG 880 (1334)
Q Consensus 820 LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNnkd~------nPveLVENIP~CvKN~~g 880 (1334)
+.++ + +......+++.+...+-.++.+..... ....+...+||.+.+...
T Consensus 156 l~~~----------e-~~~~k~~i~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Pfavi~s~~ 211 (276)
T cd01850 156 LTPE----------E-LKEFKQRIMEDIEEHNIKIYKFPEDEEDDETIEENKKLRSLIPFAVVGSNE 211 (276)
T ss_pred CCHH----------H-HHHHHHHHHHHHHHcCCceECCCCCcccHHHHHHHHhhccCCCcEEEecCc
Confidence 7642 1 222334577778777766654432211 012466778887766543
No 30
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.45 E-value=1.1e-12 Score=127.01 Aligned_cols=121 Identities=24% Similarity=0.434 Sum_probs=87.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
++|+++|.+|+|||||+|+|++.....+...+++|.........+.+.++.++||||+.+.... ...........++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHHHHHHHHHHh
Confidence 6899999999999999999999876666667777777766667778889999999999765321 11222233434444
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++|++++|+++...... .+..++.. ....++|+|+||+|+...
T Consensus 80 --~~~~~v~v~d~~~~~~~-~~~~~~~~-------~~~~~vi~v~nK~D~~~~ 122 (157)
T cd04164 80 --EADLVLFVIDASRGLDE-EDLEILEL-------PADKPIIVVLNKSDLLPD 122 (157)
T ss_pred --hCCEEEEEEECCCCCCH-HHHHHHHh-------hcCCCEEEEEEchhcCCc
Confidence 46999999999864432 23333322 234799999999998754
No 31
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.45 E-value=8e-13 Score=128.23 Aligned_cols=120 Identities=16% Similarity=0.241 Sum_probs=87.4
Q ss_pred EEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCC
Q 000717 693 LVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCA 772 (1334)
Q Consensus 693 vLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcg 772 (1334)
+|+|.+|+|||||+|+|++.....+...+++|+........+.+..+.|+||||+.+... ...+.+......++. .
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~--~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIE--E 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHH--h
Confidence 479999999999999999987666666777787777777778889999999999976532 122333344444444 4
Q ss_pred CCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 773 PDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 773 pDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+|++++|+++...... .+..+++++.. ...|+|+|+||+|....
T Consensus 77 ~d~ii~v~d~~~~~~~-~~~~~~~~~~~-----~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 77 ADVILFVVDGREGLTP-ADEEIAKYLRK-----SKKPVILVVNKVDNIKE 120 (157)
T ss_pred CCEEEEEEeccccCCc-cHHHHHHHHHh-----cCCCEEEEEECcccCCh
Confidence 6999999998754332 35556665553 34899999999998653
No 32
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=1.3e-12 Score=127.85 Aligned_cols=126 Identities=22% Similarity=0.365 Sum_probs=87.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch-hhHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ-GVNRKVLASIKKF 767 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d-~~~ekIlreIkka 767 (1334)
+++|+++|.+|+|||||+|+|++.........+++|+.........++..+.+|||||+.+..... ............+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 589999999999999999999998766666666677766666677788899999999997653211 1111111122223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+. .+|++++|+++...... ....+++.+. ....+.|+|+||+|+...
T Consensus 82 ~~--~~d~vi~v~d~~~~~~~-~~~~~~~~~~-----~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 82 IE--RADVVLLVIDATEGITE-QDLRIAGLIL-----EEGKALVIVVNKWDLVEK 128 (174)
T ss_pred Hh--hcCeEEEEEeCCCCcch-hHHHHHHHHH-----hcCCCEEEEEeccccCCc
Confidence 33 56999999998766442 3444444433 234799999999998754
No 33
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.43 E-value=6.1e-13 Score=132.19 Aligned_cols=130 Identities=20% Similarity=0.169 Sum_probs=93.0
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++|+++|++...+..+..+..+++... .++|++++. ||+|-..+ +.+..+. ..+.+.|+.
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~----~~k~~iivl----NK~DL~~~--~~~~~~~----~~~~~~~~~--- 73 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEVD----PRKKNILLL----NKADLLTE--EQRKAWA----EYFKKEGIV--- 73 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhcc----CCCcEEEEE----echhcCCH--HHHHHHH----HHHHhcCCe---
Confidence 678999999999999999889988887541 257999988 88884211 1122111 222345532
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCce
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT 724 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT 724 (1334)
+..+||..+.+ +++++|.||||||||+|+|++.....++..++.|
T Consensus 74 ------ii~iSa~~~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~ 118 (141)
T cd01857 74 ------VVFFSALKENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKT 118 (141)
T ss_pred ------EEEEEecCCCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcc
Confidence 24667766532 6899999999999999999999877777777777
Q ss_pred eeEEEEEEEeCCeEEEEEeCCCCCC
Q 000717 725 TSVKEIVGTVDGVKIRVIDTPGLKS 749 (1334)
Q Consensus 725 t~~~~~~~evdGrkVtLIDTPGL~d 749 (1334)
+..+.+.. + ..+.|+||||+..
T Consensus 119 ~~~~~~~~--~-~~~~i~DtpG~~~ 140 (141)
T cd01857 119 KHFQTIFL--T-PTITLCDCPGLVF 140 (141)
T ss_pred cceEEEEe--C-CCEEEEECCCcCC
Confidence 76554433 3 3679999999864
No 34
>PRK00089 era GTPase Era; Reviewed
Probab=99.43 E-value=1.1e-12 Score=144.19 Aligned_cols=123 Identities=22% Similarity=0.304 Sum_probs=89.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
...|+|+|+||||||||+|+|+|...+.+++.+.+|+.........++.++.|+||||+.+... ...+.+...+..++
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHHHHHH
Confidence 4579999999999999999999998888877767776655444444567999999999986531 12333444455555
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .+|+++||++++..... .+..+++.+. ....|+++|+||+|+..
T Consensus 83 ~--~~D~il~vvd~~~~~~~-~~~~i~~~l~-----~~~~pvilVlNKiDl~~ 127 (292)
T PRK00089 83 K--DVDLVLFVVDADEKIGP-GDEFILEKLK-----KVKTPVILVLNKIDLVK 127 (292)
T ss_pred h--cCCEEEEEEeCCCCCCh-hHHHHHHHHh-----hcCCCEEEEEECCcCCC
Confidence 5 46999999999873222 3455555554 23479999999999863
No 35
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.43 E-value=7.2e-13 Score=147.55 Aligned_cols=184 Identities=16% Similarity=0.265 Sum_probs=100.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceecc-C------CCceeeEEE--EEEEeCC--eEEEEEeCCCCCCCCcc---
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHA-F------EPGTTSVKE--IVGTVDG--VKIRVIDTPGLKSSGVE--- 753 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss-~------~gtTt~~~~--~~~evdG--rkVtLIDTPGL~ds~i~--- 753 (1334)
..++|+|+|.+|+|||||||+|++........ . ...|..... ....-++ .+++||||||+.+.--.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 46899999999999999999999976544321 1 111222222 2223233 36899999999876211
Q ss_pred -hhhHHHHHHHHHHHHhh-----------CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 754 -QGVNRKVLASIKKFTKK-----------CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 754 -d~~~ekIlreIkkaIkk-----------cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
......+......++.. .++|+|||+++++.......|...|+.|. .+.++|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls------~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLS------KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHT------TTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhc------ccccEEeEEecccccC
Confidence 12223333333333331 15899999999876554445777887775 3479999999999876
Q ss_pred CCCCCCCCCcHHHHHHhhhHHHHHHHHHhccceeecCcCcCC------cccccccCccccccCCCceecCCCC
Q 000717 822 PDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNPSLMN------PVSLVENHPACRKNRDGQKVLPNGQ 888 (1334)
Q Consensus 822 pDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNnkd~n------PveLVENIP~CvKN~~gE~VLPNG~ 888 (1334)
+ ++ +......+++.+++..-+++.|...... ...+...+||++.+......-++|.
T Consensus 157 ~----------~e-l~~~k~~i~~~l~~~~I~~f~f~~~~~~~~e~~~~~~~~~~~PFavi~s~~~~~~~~g~ 218 (281)
T PF00735_consen 157 P----------EE-LQAFKQRIREDLEENNIKIFDFPEDDDDDEEIEENQKIRSMLPFAVIGSNTEIENSNGK 218 (281)
T ss_dssp H----------HH-HHHHHHHHHHHHHHTT--S----------HCHHHHHHHHHC-SEEE---SSEEEE-SSS
T ss_pred H----------HH-HHHHHHHHHHHHHHcCceeeccccccccccccccccccccceeeEEEecceeeeccCCc
Confidence 4 23 2333455777777777666554332211 2357778899888766444333444
No 36
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.42 E-value=5.5e-13 Score=137.94 Aligned_cols=147 Identities=20% Similarity=0.201 Sum_probs=92.9
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHH--HHHHHHHHHHHHHHHHHhcCCCC
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKT--KLEKLQHLRVKFLRLVHRLGYSP 642 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke--~leKlq~I~~kF~rl~~RLGlsp 642 (1334)
.++++|+++|.+...+..+..+. .. ..++|+++++ ||+|-..+ ..+.++.+...+ .....++..
T Consensus 34 ~ad~il~VvD~~~~~~~~~~~l~--~~------~~~~~~ilV~----NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~ 99 (190)
T cd01855 34 KKALVVHVVDIFDFPGSLIPRLR--LF------GGNNPVILVG----NKIDLLPKDKNLVRIKNWLRAK--AAAGLGLKP 99 (190)
T ss_pred CCcEEEEEEECccCCCccchhHH--Hh------cCCCcEEEEE----EchhcCCCCCCHHHHHHHHHHH--HHhhcCCCc
Confidence 56899999999875544444441 11 1257888888 88774211 111111111000 112233321
Q ss_pred cchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCc--------
Q 000717 643 EDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEK-------- 714 (1334)
Q Consensus 643 ~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~-------- 714 (1334)
.-++.+||..|.|+.+|+ ..+...++ ...+++++|.||||||||||+|++...
T Consensus 100 ------~~i~~vSA~~~~gi~eL~--~~l~~~l~-----------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~ 160 (190)
T cd01855 100 ------KDVILISAKKGWGVEELI--NAIKKLAK-----------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDL 160 (190)
T ss_pred ------ccEEEEECCCCCCHHHHH--HHHHHHhh-----------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccc
Confidence 124679999999998883 44443332 346899999999999999999998643
Q ss_pred ceeccCCCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 715 TSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 715 a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
..++..+++|+..+.+... ..+.|||||||
T Consensus 161 ~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 161 LTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred cccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 3455667778877766552 25799999997
No 37
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.42 E-value=1.1e-12 Score=151.10 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=96.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+|+|+||||||||+|+|++...+.+...+++|++.......++++.+.||||||+.... ....+.+...+..++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~- 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIE- 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHh-
Confidence 4899999999999999999999888888888999998888889999999999999986432 2223445555556666
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+|++|+|+++...... .+..+++++.+ ..+++|+|+||+|....
T Consensus 78 -~ad~vl~vvD~~~~~~~-~d~~i~~~l~~-----~~~piilVvNK~D~~~~ 122 (429)
T TIGR03594 78 -EADVILFVVDGREGLTP-EDEEIAKWLRK-----SGKPVILVANKIDGKKE 122 (429)
T ss_pred -hCCEEEEEEeCCCCCCH-HHHHHHHHHHH-----hCCCEEEEEECccCCcc
Confidence 45999999998865432 46667777763 35899999999998654
No 38
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.41 E-value=4.1e-12 Score=122.64 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=85.4
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.++|+++|.+|+|||||+|+|++...+.+.....+|+..........+..+.+|||||+....... ...........+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~--~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL--GERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHH--HHHHHHHHHHHH
Confidence 578999999999999999999998766666555566655555555566789999999987653211 112222233333
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .+|++++|+++...... .+..+++.+.. ...+.++|+||+|+..
T Consensus 81 ~--~~d~i~~v~d~~~~~~~-~~~~~~~~~~~-----~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 81 K--DVDLVLFVVDASEPIGE-GDEFILELLKK-----SKTPVILVLNKIDLVK 125 (168)
T ss_pred H--hCCEEEEEEECCCccCc-hHHHHHHHHHH-----hCCCEEEEEEchhccc
Confidence 3 56999999999876322 34555555542 2478999999999863
No 39
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.38 E-value=1.1e-11 Score=134.95 Aligned_cols=200 Identities=20% Similarity=0.336 Sum_probs=121.2
Q ss_pred CchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccC------CCceeeEEEEE--E
Q 000717 661 QTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAF------EPGTTSVKEIV--G 732 (1334)
Q Consensus 661 Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~------~gtTt~~~~~~--~ 732 (1334)
|++.+ ++.+..+++. .++.++|+|+|.+|.||||++|+|+.......+.. -+.|+...... .
T Consensus 28 GidtI--~~Qm~~k~mk--------~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvi 97 (336)
T KOG1547|consen 28 GIDTI--IEQMRKKTMK--------TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVI 97 (336)
T ss_pred cHHHH--HHHHHHHHHh--------ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeee
Confidence 44444 4555555542 36889999999999999999999997654332111 13344433332 3
Q ss_pred EeCCe--EEEEEeCCCCCCCC----cchhhHHHHHHHHHHHHh------------hCCCCEEEEEecCCCccCCCCcHHH
Q 000717 733 TVDGV--KIRVIDTPGLKSSG----VEQGVNRKVLASIKKFTK------------KCAPDIVLYVDRLDSQTRDLNDLPL 794 (1334)
Q Consensus 733 evdGr--kVtLIDTPGL~ds~----i~d~~~ekIlreIkkaIk------------kcgpDVVLLVIDad~~t~e~qDl~l 794 (1334)
+-+|. +++|||||||++.- ..+...+++..+..+++. ..++|+|||+++++.......|..+
T Consensus 98 eE~gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDief 177 (336)
T KOG1547|consen 98 EEKGVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEF 177 (336)
T ss_pred eecceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHH
Confidence 33444 68999999999861 223344444444444443 2268999999999977666679999
Q ss_pred HHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHH-hcccee--ecCcCc--C-Cccccc
Q 000717 795 LRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQ-AVGDLR--LMNPSL--M-NPVSLV 868 (1334)
Q Consensus 795 Le~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQ-cgGRy~--vfNnkd--~-nPveLV 868 (1334)
|+.+.++ .++|.|+.|+|.+ ++++..+-+ +.+++-+.+ |..-|- .++... . .-..+-
T Consensus 178 lkrLt~v------vNvvPVIakaDtl----------TleEr~~Fk-qrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 178 LKRLTEV------VNVVPVIAKADTL----------TLEERSAFK-QRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHhhh------heeeeeEeecccc----------cHHHHHHHH-HHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 9999865 5899999999975 444433322 223332332 332221 111110 0 112577
Q ss_pred ccCccccccCCCceecCCCC
Q 000717 869 ENHPACRKNRDGQKVLPNGQ 888 (1334)
Q Consensus 869 ENIP~CvKN~~gE~VLPNG~ 888 (1334)
+.|||.+.+...+ ..-||.
T Consensus 241 ~~iPFAVVGsd~e-~~vnG~ 259 (336)
T KOG1547|consen 241 ESIPFAVVGSDKE-IQVNGR 259 (336)
T ss_pred hhCCeEEecccce-EEEcCe
Confidence 8899998876644 344554
No 40
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.37 E-value=1.9e-12 Score=128.41 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=79.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe-EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV-KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr-kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
+|+|+|++|||||||+|+|.+... .++..+++|.........+.+. ++.|+||||+.+..... ..+...+.+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG---KGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc---CCchHHHHHHHH
Confidence 589999999999999999998653 4555555666655555566666 89999999986432111 011122223333
Q ss_pred hCCCCEEEEEecCCCc-cCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQ-TRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~-t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..|++++|++++.. ..-..-..+++.+.+.......+|.++|+||+|+.++
T Consensus 78 --~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 78 --RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred --hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 35999999998865 2110112233334332211235789999999998654
No 41
>PRK15494 era GTPase Era; Provisional
Probab=99.36 E-value=5e-12 Score=143.70 Aligned_cols=123 Identities=19% Similarity=0.243 Sum_probs=90.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+|+|++|||||||+|+|+|.....+++.+.+|+........+++.++.|+||||+..... .....+.+....+
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~~~~~r~~~~~ 128 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLEKAMVRCAWSS 128 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHHHHHHHHHHHH
Confidence 45799999999999999999999998777777777777766666778889999999999975421 1234455555555
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+. .+|++|||++....... .+..+++.+.. ...+.|+|+||+|+.
T Consensus 129 l~--~aDvil~VvD~~~s~~~-~~~~il~~l~~-----~~~p~IlViNKiDl~ 173 (339)
T PRK15494 129 LH--SADLVLLIIDSLKSFDD-ITHNILDKLRS-----LNIVPIFLLNKIDIE 173 (339)
T ss_pred hh--hCCEEEEEEECCCCCCH-HHHHHHHHHHh-----cCCCEEEEEEhhcCc
Confidence 55 46999999987653322 23445555542 235778999999974
No 42
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.35 E-value=7.9e-12 Score=146.98 Aligned_cols=126 Identities=21% Similarity=0.343 Sum_probs=92.9
Q ss_pred cccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 685 DLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 685 ~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
.+...++|+|+|+||||||||+|+|++.....++..+++|++.......++|.++.|+||||+++.. .......+...
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~--~~ie~~gi~~~ 276 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA--DFVERLGIEKS 276 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch--hHHHHHHHHHH
Confidence 3456799999999999999999999998888888888999988888888899999999999997642 11122222333
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..++. .+|++|+|++++..... .+. ++..+. ...+|+|+|+||+|+..
T Consensus 277 ~~~~~--~aD~il~V~D~s~~~s~-~~~-~l~~~~-----~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIK--QADLVIYVLDASQPLTK-DDF-LIIDLN-----KSKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHh--hCCEEEEEEECCCCCCh-hHH-HHHHHh-----hCCCCEEEEEECccCCC
Confidence 34555 46999999998765432 222 333222 23479999999999853
No 43
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.35 E-value=3.5e-12 Score=127.69 Aligned_cols=146 Identities=21% Similarity=0.117 Sum_probs=99.0
Q ss_pred ccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 564 SQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 564 s~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
..+|++|+++|++.+.+..+..+..+++.. ++|++++. ||+|-... +..+.+. .+ ....+..
T Consensus 11 ~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~------~~p~iiv~----NK~Dl~~~--~~~~~~~-~~---~~~~~~~-- 72 (156)
T cd01859 11 KESDVVLEVLDARDPELTRSRKLERYVLEL------GKKLLIVL----NKADLVPK--EVLEKWK-SI---KESEGIP-- 72 (156)
T ss_pred hhCCEEEEEeeCCCCcccCCHHHHHHHHhC------CCcEEEEE----EhHHhCCH--HHHHHHH-HH---HHhCCCc--
Confidence 357899999999988877776666555433 57889888 88884211 0111111 11 1122221
Q ss_pred chhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCc
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG 723 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt 723 (1334)
+..+||.++.|+..| ++.+...++. .....+++++|.+|+||||++|.|++.....+++..++
T Consensus 73 -------~~~iSa~~~~gi~~L--~~~l~~~~~~--------~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~ 135 (156)
T cd01859 73 -------VVYVSAKERLGTKIL--RRTIKELAKI--------DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGY 135 (156)
T ss_pred -------EEEEEccccccHHHH--HHHHHHHHhh--------cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe
Confidence 367899999999888 3444444431 13468899999999999999999999877777777677
Q ss_pred eeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 724 TTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 724 Tt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
|+..+.... +..+.|+||||+
T Consensus 136 t~~~~~~~~---~~~~~~~DtpGi 156 (156)
T cd01859 136 TKGEQLVKI---TSKIYLLDTPGV 156 (156)
T ss_pred eeeeEEEEc---CCCEEEEECcCC
Confidence 765543322 346899999996
No 44
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=8.7e-12 Score=144.31 Aligned_cols=121 Identities=16% Similarity=0.230 Sum_probs=93.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
++|+|+|++|||||||+|+|++...+.+...+++|++.......+++..+.||||||+.+.. ......+...+..++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD--DGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcc--hhHHHHHHHHHHHHHH
Confidence 47999999999999999999999877788888888888888888899999999999997632 1122334444445555
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.+|++|||+++...... .+..+++++.+ ..+++|+|+||+|..
T Consensus 80 --~ad~il~vvd~~~~~~~-~~~~~~~~l~~-----~~~piilv~NK~D~~ 122 (435)
T PRK00093 80 --EADVILFVVDGRAGLTP-ADEEIAKILRK-----SNKPVILVVNKVDGP 122 (435)
T ss_pred --hCCEEEEEEECCCCCCH-HHHHHHHHHHH-----cCCcEEEEEECccCc
Confidence 46999999998764332 35666776664 258999999999953
No 45
>PRK12289 GTPase RsgA; Reviewed
Probab=99.31 E-value=3e-12 Score=146.78 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=109.0
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
..|.+|||+|... .......+.+||.... ..+.|++|++ ||+|-... +.++.+ ...+..+|+.+
T Consensus 89 NvD~vLlV~d~~~-p~~~~~~LdR~L~~a~---~~~ip~ILVl----NK~DLv~~--~~~~~~----~~~~~~~g~~v-- 152 (352)
T PRK12289 89 NADQILLVFALAE-PPLDPWQLSRFLVKAE---STGLEIVLCL----NKADLVSP--TEQQQW----QDRLQQWGYQP-- 152 (352)
T ss_pred cCCEEEEEEECCC-CCCCHHHHHHHHHHHH---HCCCCEEEEE----EchhcCCh--HHHHHH----HHHHHhcCCeE--
Confidence 4578899999763 2222334455554221 1257888888 88884211 112222 22335677753
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCC--
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEP-- 722 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~g-- 722 (1334)
+.+||.++.|+.+|+ +.+. ...++|+|+||||||||||+|++.....++..++
T Consensus 153 -------~~iSA~tg~GI~eL~--~~L~----------------~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~ 207 (352)
T PRK12289 153 -------LFISVETGIGLEALL--EQLR----------------NKITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKL 207 (352)
T ss_pred -------EEEEcCCCCCHHHHh--hhhc----------------cceEEEEeCCCCCHHHHHHHHcCccccccccccCCC
Confidence 578999999988773 2221 1247999999999999999999988777665544
Q ss_pred -----ceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc--hhhHHHHHHHHHHHH--hhCCCCEEEEEec
Q 000717 723 -----GTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE--QGVNRKVLASIKKFT--KKCAPDIVLYVDR 781 (1334)
Q Consensus 723 -----tTt~~~~~~~evdGrkVtLIDTPGL~ds~i~--d~~~ekIlreIkkaI--kkcgpDVVLLVID 781 (1334)
+|+..+.+... .|. .|||||||...... .......+.+++.++ ..|++.=|.+...
T Consensus 208 ~rGrHTT~~~~l~~l~-~g~--~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~~~~CrF~dC~H~~E 272 (352)
T PRK12289 208 GRGRHTTRHVELFELP-NGG--LLADTPGFNQPDLDCSPRELAHYFPEARQRLAQGNCQFNDCLHRDE 272 (352)
T ss_pred CCCCCcCceeEEEECC-CCc--EEEeCCCccccccccCHHHHHhhHHHHHHhHhhCceEccCCccCCC
Confidence 45555444332 233 79999999988652 122345566777654 5777776766643
No 46
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.31 E-value=7.8e-12 Score=145.02 Aligned_cols=126 Identities=15% Similarity=0.118 Sum_probs=86.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
-.|+|||+||||||||+|+|++.. ..+++.+.+|+........+.+ ++++|+||||+....... ..+...+.+++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~---~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEG---AGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccch---hhHHHHHHHHH
Confidence 369999999999999999999875 4788888889888877777764 569999999998653211 11223333456
Q ss_pred hhCCCCEEEEEecCCCcc---CCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQT---RDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t---~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.. .+++|+|+++.... .......+++.+......-..+|.|||+||+|+..
T Consensus 236 ~r--advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 236 ER--CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred Hh--CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 64 49999999987321 11112334444443211113579999999999754
No 47
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=1.5e-11 Score=145.02 Aligned_cols=123 Identities=20% Similarity=0.283 Sum_probs=94.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
...+|+|+|+||||||||+|+|++...+.+...+++|++.......+.+.++.||||||+.... ......+...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHHH
Confidence 4578999999999999999999998777777888888888888888899999999999986321 11223344445555
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+.. +|++|+|+|++..... .+..+++++.. ..+|+|+|+||+|+.
T Consensus 115 ~~~--aD~il~VvD~~~~~s~-~~~~i~~~l~~-----~~~piilV~NK~Dl~ 159 (472)
T PRK03003 115 MRT--ADAVLFVVDATVGATA-TDEAVARVLRR-----SGKPVILAANKVDDE 159 (472)
T ss_pred HHh--CCEEEEEEECCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccCC
Confidence 664 5999999999875432 35566666652 458999999999975
No 48
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.31 E-value=1.3e-11 Score=145.11 Aligned_cols=125 Identities=26% Similarity=0.394 Sum_probs=91.6
Q ss_pred ccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 686 LNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 686 l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
+...++|+++|.||+|||||+|+|++...+.+++.+++|++.......++|.++.|+||||+.+.. .......++...
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~--~~ie~~gi~~~~ 289 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD--DEVEKIGIERSR 289 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc--cHHHHHHHHHHH
Confidence 345689999999999999999999998877788888888888777788889999999999997532 111222223333
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.++. .+|++|+|+|++..... .+..++ .. ...+|+|+|+||+|+..+
T Consensus 290 ~~~~--~aD~il~VvD~s~~~s~-~~~~~l---~~----~~~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 290 EAIE--EADLVLLVLDASEPLTE-EDDEIL---EE----LKDKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHH--hCCEEEEEecCCCCCCh-hHHHHH---Hh----cCCCCcEEEEEhhhcccc
Confidence 4444 46999999999765432 233332 22 234799999999998643
No 49
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.30 E-value=1.2e-11 Score=120.65 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=80.6
Q ss_pred EEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCC
Q 000717 694 VLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAP 773 (1334)
Q Consensus 694 LVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgp 773 (1334)
|+|.+|||||||+|+|++.. +.++..+++|..+......+++..+.||||||+.+..... ....+. ..++....+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~---~~~~~~~~~ 75 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS-EDEKVA---RDFLLGEKP 75 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCC-hhHHHH---HHHhcCCCC
Confidence 58999999999999999975 5556666777777666777888899999999987653211 111222 223322357
Q ss_pred CEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 774 DIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 774 DVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
|++++|+++..... ....+..+.+ ..+++|+|+||+|+...
T Consensus 76 d~vi~v~d~~~~~~---~~~~~~~~~~-----~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 76 DLIVNVVDATNLER---NLYLTLQLLE-----LGLPVVVALNMIDEAEK 116 (158)
T ss_pred cEEEEEeeCCcchh---HHHHHHHHHH-----cCCCEEEEEehhhhccc
Confidence 99999999876432 3334433332 35799999999998653
No 50
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.29 E-value=3.1e-11 Score=119.88 Aligned_cols=126 Identities=21% Similarity=0.216 Sum_probs=80.0
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
.+|+++|.+|+|||||+|+|++... .+...+.+|..+......+++.++.|+||||+.+...... .......+ ..+.
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-~~~~~~~~-~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEER-NTIEMQAI-TALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCC-chHHHHHH-HHHH
Confidence 3799999999999999999999753 3344445566666555666778999999999865432111 00001111 1121
Q ss_pred hCCCCEEEEEecCCCccC-C-CCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTR-D-LNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~-e-~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+..|++|||++++.... . .....+++.+...+ ...|+|+|+||+|...+
T Consensus 78 -~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 78 -HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTF 128 (168)
T ss_pred -hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCch
Confidence 13589999999875432 1 01223444454332 25799999999998643
No 51
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.29 E-value=2.5e-11 Score=138.49 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=114.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceec---cCCC----ceeeEEEEEEEe--CCe--EEEEEeCCCCCCCC----
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIH---AFEP----GTTSVKEIVGTV--DGV--KIRVIDTPGLKSSG---- 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vs---s~~g----tTt~~~~~~~ev--dGr--kVtLIDTPGL~ds~---- 751 (1334)
+.+++|+++|.+|.|||||||+|++....... ...+ .|.........+ +|. +++|||||||++.-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 56899999999999999999999997322111 1111 233333333333 343 68999999999862
Q ss_pred cchhhHHHHHHHHHHHHhh------------CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 752 VEQGVNRKVLASIKKFTKK------------CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkk------------cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
..+.+..++-.+...++.. .++|+|||+++++.......|..+|+.|.+ ..++|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~------~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK------RVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc------ccCeeeeeecccc
Confidence 2223444444445444432 268999999999887766678888888864 3699999999998
Q ss_pred CCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhccceee-cCcCcC------CcccccccCcccccc
Q 000717 820 APPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLRL-MNPSLM------NPVSLVENHPACRKN 877 (1334)
Q Consensus 820 LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~v-fNnkd~------nPveLVENIP~CvKN 877 (1334)
+..+ + +......+++.|.++.-+++. +.+... .-..|.+.+||.+-+
T Consensus 175 lT~~----------E-l~~~K~~I~~~i~~~nI~vf~pyd~e~~~~e~~e~~~~l~~~~PFAII~ 228 (373)
T COG5019 175 LTDD----------E-LAEFKERIREDLEQYNIPVFDPYDPEDDEDESLEENQDLRSLIPFAIIG 228 (373)
T ss_pred CCHH----------H-HHHHHHHHHHHHHHhCCceeCCCCccccchhhHHHHHHHhhcCCeEEEe
Confidence 8653 2 444445677778887766643 222211 112577778887643
No 52
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.29 E-value=3.8e-11 Score=137.47 Aligned_cols=126 Identities=15% Similarity=0.157 Sum_probs=85.0
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..++|+|+|.||||||||+|+|++.. +.+.+.+++|.+.......+ ++.++.|+||||+.... .....+. ++.+..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~~lie~-f~~tle 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PHELVAA-FRATLE 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC-CHHHHHH-HHHHHH
Confidence 44899999999999999999999986 55666667777776666666 57899999999984321 1111122 333334
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHH-HHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLP-LLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~-lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+. .+|++|+|+|++..... .+.. +.+.+. .++ ...+|+|+|+||+|+..
T Consensus 265 ~~~--~ADlil~VvD~s~~~~~-~~~~~~~~~L~-~l~-~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 265 EVR--EADLLLHVVDASDPDRE-EQIEAVEKVLE-ELG-AEDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHH--hCCEEEEEEECCCCchH-HHHHHHHHHHH-Hhc-cCCCCEEEEEEeecCCC
Confidence 444 46999999999865432 1222 223333 233 12479999999999864
No 53
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.29 E-value=3.9e-11 Score=122.51 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=82.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCC-cceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEE-KTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee-~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..++|+|+|.+|+|||||+|+|++.. ...++...++|+.+..... +.++.||||||+..........+.....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 56899999999999999999999975 4555666666766554432 4789999999987543322222233333334
Q ss_pred HHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++..+ ..+++++|++.+..... .+..+++++. ..+.++++++||+|++..
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~-~~~~i~~~l~-----~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKE-LDLQMIEWLK-----EYGIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCH-HHHHHHHHHH-----HcCCcEEEEEECcccCCH
Confidence 44433 35778888876654322 2344555553 235789999999998643
No 54
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.26 E-value=1.1e-11 Score=123.17 Aligned_cols=123 Identities=21% Similarity=0.220 Sum_probs=78.5
Q ss_pred EEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCC
Q 000717 694 VLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCA 772 (1334)
Q Consensus 694 LVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcg 772 (1334)
|+|++|||||||+|+|++... .+...+++|..+......+. +.++.|+||||+.+..... +.+...+...+. +
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~---~~~~~~~~~~~~--~ 74 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG---RGLGNQFLAHIR--R 74 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC---CCccHHHHHHHh--c
Confidence 589999999999999999865 45566677777666666777 8999999999986432111 111122233334 4
Q ss_pred CCEEEEEecCCCcc-----CCCCcHH-HHHHHHHHhcc-----cCCceEEEEEeccCCCCC
Q 000717 773 PDIVLYVDRLDSQT-----RDLNDLP-LLRSITNALGT-----QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 773 pDVVLLVIDad~~t-----~e~qDl~-lLe~IqeiFG~-----ea~K~tIIVLTK~D~Lep 822 (1334)
+|++++|+++.... ....+.. ....+...... ...+|+++|+||+|+...
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 69999999987652 1101111 22222211110 135899999999998653
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.26 E-value=4.4e-11 Score=147.73 Aligned_cols=121 Identities=16% Similarity=0.278 Sum_probs=94.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
.+|+|+|+||||||||+|+|++...+.+...+++|++.......++++++.||||||+.... ......+...+..++.
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDSAIASQAQIAVS 353 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHHHHH
Confidence 67999999999999999999998877888888899988888888899999999999987432 1233345555555666
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.+|++|+|+|+...... .+..+++.+. ...+|+|+|+||+|..
T Consensus 354 --~aD~iL~VvDa~~~~~~-~d~~i~~~Lr-----~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 354 --LADAVVFVVDGQVGLTS-TDERIVRMLR-----RAGKPVVLAVNKIDDQ 396 (712)
T ss_pred --hCCEEEEEEECCCCCCH-HHHHHHHHHH-----hcCCCEEEEEECcccc
Confidence 45999999998764332 3556666665 2468999999999975
No 56
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=3.1e-11 Score=137.53 Aligned_cols=126 Identities=16% Similarity=0.195 Sum_probs=87.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
-..|.|||.||||||||+|+|.+.. ..+++++.+|.........+ ++.+++|+||||+.+..... ..+-..+.++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~---~gLg~~flrh 233 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG---AGLGHRFLKH 233 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc---ccHHHHHHHH
Confidence 3469999999999999999999864 45777888888887777777 56789999999997643211 1223344455
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHH-HHHHHHHHhccc-CCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLP-LLRSITNALGTQ-IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~-lLe~IqeiFG~e-a~K~tIIVLTK~D~Lep 822 (1334)
++. .+++|||+|++.... ..+.. +.+.+.. +.+. ..++.|||+||+|+...
T Consensus 234 ie~--a~vlI~ViD~s~~~s-~e~~~~~~~EL~~-~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 234 IER--TRLLLHLVDIEAVDP-VEDYKTIRNELEK-YSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred hhh--cCEEEEEEcCCCCCC-HHHHHHHHHHHHH-hhhhcccCCeEEEEECcccCCc
Confidence 664 489999999885431 11222 3333332 2222 35799999999998643
No 57
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.25 E-value=3e-11 Score=138.50 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=111.0
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.++++|++||...-.++....+.+.++ ++|+++++ ||+|-..+. .....+..++...+...|+.+.
T Consensus 63 ~~~~Il~VvD~~d~~~s~~~~l~~~~~--------~~piilV~----NK~DLl~k~-~~~~~~~~~l~~~~k~~g~~~~- 128 (360)
T TIGR03597 63 SNALIVYVVDIFDFEGSLIPELKRFVG--------GNPVLLVG----NKIDLLPKS-VNLSKIKEWMKKRAKELGLKPV- 128 (360)
T ss_pred CCcEEEEEEECcCCCCCccHHHHHHhC--------CCCEEEEE----EchhhCCCC-CCHHHHHHHHHHHHHHcCCCcC-
Confidence 457899999986655555555544432 46888888 888732100 0111222333333456776431
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCC-----cceecc
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEE-----KTSIHA 719 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee-----~a~Vss 719 (1334)
-++.+||..|.|+.+|+ ..+.... ...+++++|.||||||||||+|++.. .+.++.
T Consensus 129 -----~i~~vSAk~g~gv~eL~--~~l~~~~------------~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~ 189 (360)
T TIGR03597 129 -----DIILVSAKKGNGIDELL--DKIKKAR------------NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSP 189 (360)
T ss_pred -----cEEEecCCCCCCHHHHH--HHHHHHh------------CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecC
Confidence 13568999999998884 3332210 13689999999999999999999854 356677
Q ss_pred CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC-cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCC
Q 000717 720 FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDS 784 (1334)
Q Consensus 720 ~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~-i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~ 784 (1334)
.+++|+....+.. +..+.||||||+.... +...... +.++........+.+.|.++..+
T Consensus 190 ~pgtT~~~~~~~~---~~~~~l~DtPG~~~~~~~~~~l~~---~~l~~~~~~~~i~~~~~~l~~~q 249 (360)
T TIGR03597 190 FPGTTLDLIEIPL---DDGHSLYDTPGIINSHQMAHYLDK---KDLKYITPKKEIKPKTYQLNPNQ 249 (360)
T ss_pred CCCeEeeEEEEEe---CCCCEEEECCCCCChhHhhhhcCH---HHHhhcCCCCccCceEEEeCCCC
Confidence 7788887665543 3346899999998652 1111111 22222333334677777776654
No 58
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=7.8e-11 Score=135.08 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=112.1
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCccee------ccCCCceeeEEEEEEEe--CCe--EEEEEeCCCCCCCC----c
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSI------HAFEPGTTSVKEIVGTV--DGV--KIRVIDTPGLKSSG----V 752 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~V------ss~~gtTt~~~~~~~ev--dGr--kVtLIDTPGL~ds~----i 752 (1334)
+..++++++|.+|.|||||||+||+.....- ...+..|.........+ +|. +++||||||+.+.- .
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 5789999999999999999999998732211 11112233333333333 444 67899999999862 1
Q ss_pred chhhHHHHHHHHHHHHhh-----------CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 753 EQGVNRKVLASIKKFTKK-----------CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 753 ~d~~~ekIlreIkkaIkk-----------cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
......++-.....++.. .++|+|||++.+........|..+++.+.. ..++|.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~------~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK------KVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc------cccccceeeccccCC
Confidence 223344455555555542 268999999998877665678888888863 369999999999987
Q ss_pred CCCCCCCCCcHHHHHHhhhHHHHHHHHHhccceeecCcCcCC------cccccccCccccc
Q 000717 822 PDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNPSLMN------PVSLVENHPACRK 876 (1334)
Q Consensus 822 pDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNnkd~n------PveLVENIP~CvK 876 (1334)
++ .+......+.+.|.++.-+++.|...... ...|.+.+||.+.
T Consensus 173 ~~-----------El~~~K~~I~~~i~~~nI~vf~fp~~~~d~~~~~~~~~l~~~~PFAIi 222 (366)
T KOG2655|consen 173 KD-----------ELNQFKKRIRQDIEEHNIKVFDFPTDESDEELKEEEQDLKSSIPFAII 222 (366)
T ss_pred HH-----------HHHHHHHHHHHHHHHcCcceecCCCCcchhhhHHHHHHHhhcCCeEEE
Confidence 63 24444455666677666666555332110 1256677777653
No 59
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.24 E-value=5e-11 Score=139.45 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=94.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH--
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI-- 764 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI-- 764 (1334)
....+++|+|.||||||||+|.+.-.. ..+.+++.+|+..-..++.+.=.++.+||||||.+....+...-+ +..|
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHHHHH
Confidence 356899999999999999999988664 456778788887766666666678999999999998655422111 1122
Q ss_pred HHHHhhCCCCEEEEEecCCCcc--CCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQT--RDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDG 824 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t--~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDg 824 (1334)
..++. -+|||++|++... .-.....++..|+..|. .+++|+|+||+|...+++
T Consensus 244 LAHLr----aaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~ed 298 (620)
T KOG1490|consen 244 LAHLR----SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPED 298 (620)
T ss_pred HHHhh----hhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCccc
Confidence 12233 3799999998532 11246788888888885 478999999999998854
No 60
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.22 E-value=4.8e-11 Score=133.53 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=98.1
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch--hhHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ--GVNRKVLASI 764 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d--~~~ekIlreI 764 (1334)
...++|+|+|.||||||||.|.++|++.+.++....+|+......++-+..++.|+||||+....... ......++..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 46799999999999999999999999999998877777776777777788899999999998764321 1122234455
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++++. .+|+|++|+|++..+ ....-++|..+.+.. ..+.|+|+||.|.+++
T Consensus 150 ~~a~q--~AD~vvVv~Das~tr-~~l~p~vl~~l~~ys----~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 150 RDAAQ--NADCVVVVVDASATR-TPLHPRVLHMLEEYS----KIPSILVMNKIDKLKQ 200 (379)
T ss_pred HHHHh--hCCEEEEEEeccCCc-CccChHHHHHHHHHh----cCCceeeccchhcchh
Confidence 56666 469999999998633 334556777776542 2689999999998764
No 61
>PRK12288 GTPase RsgA; Reviewed
Probab=99.22 E-value=3.2e-11 Score=138.10 Aligned_cols=145 Identities=19% Similarity=0.198 Sum_probs=95.2
Q ss_pred CCceEEEecCCCCCchhHHHH-HHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhh
Q 000717 600 SSRLATGGETETNLSEEEKTK-LEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQL 678 (1334)
Q Consensus 600 ~kpVvLaa~~~~NKsEe~ke~-leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~ 678 (1334)
+.|++++. ||+|-.... ...++. +...+..+|+.. +.+||.++.|+.+|+ ..+..
T Consensus 150 ~i~~VIVl----NK~DL~~~~~~~~~~~----~~~~y~~~g~~v---------~~vSA~tg~GideL~--~~L~~----- 205 (347)
T PRK12288 150 GIEPLIVL----NKIDLLDDEGRAFVNE----QLDIYRNIGYRV---------LMVSSHTGEGLEELE--AALTG----- 205 (347)
T ss_pred CCCEEEEE----ECccCCCcHHHHHHHH----HHHHHHhCCCeE---------EEEeCCCCcCHHHHH--HHHhh-----
Confidence 46777777 777742211 111121 222234667642 578999999988873 22211
Q ss_pred hHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCC------Ccee-eEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 679 EAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE------PGTT-SVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 679 eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~------gtTt-~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
..++|+|.||||||||||+|++.....++... .+|| ....+...-++ .|||||||+...
T Consensus 206 -----------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 206 -----------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred -----------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 13799999999999999999998877765543 2444 44444442233 599999999886
Q ss_pred cch---hhHHHHHHHHHHHHhhCCCCEEEEEecC
Q 000717 752 VEQ---GVNRKVLASIKKFTKKCAPDIVLYVDRL 782 (1334)
Q Consensus 752 i~d---~~~ekIlreIkkaIkkcgpDVVLLVIDa 782 (1334)
+.. ......+.+|..+...|++.=|.+....
T Consensus 272 l~~~~~~~l~~~F~ei~~~~~~CrF~dC~H~~Ep 305 (347)
T PRK12288 272 LWHLEPEQVTQGFVEFRDYLGTCKFRDCKHDDDP 305 (347)
T ss_pred CCCCCHHHHHHhhHHHHHHhcCCCCCCCccCCCC
Confidence 532 3355678888888899998888877543
No 62
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.22 E-value=1e-10 Score=122.59 Aligned_cols=118 Identities=22% Similarity=0.243 Sum_probs=74.4
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceecc----CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHA----FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss----~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
+++|+|+|++|+|||||+|+|+|........ ...+|.....+.. .....+.++||||+.+.... .+..++.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~---~~~~l~~~ 76 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFP---PDDYLEEM 76 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCC---HHHHHHHh
Confidence 4789999999999999999999954322111 1112222222211 12347899999999865322 12222222
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
...+.|++|+|.+ ..++. .|..+++.+.+. .+++++|+||||...+
T Consensus 77 ----~~~~~d~~l~v~~-~~~~~--~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 77 ----KFSEYDFFIIISS-TRFSS--NDVKLAKAIQCM-----GKKFYFVRTKVDRDLS 122 (197)
T ss_pred ----CccCcCEEEEEeC-CCCCH--HHHHHHHHHHHh-----CCCEEEEEecccchhh
Confidence 2224688888854 23332 477788877753 4788999999999765
No 63
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.21 E-value=1.3e-10 Score=113.93 Aligned_cols=115 Identities=22% Similarity=0.236 Sum_probs=73.5
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceecc--CCCceeeEEEEEEEeC-CeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHA--FEPGTTSVKEIVGTVD-GVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss--~~gtTt~~~~~~~evd-GrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+.|+|+|.+|||||||+|+|.+........ .+.+|.........+. +.++.+|||||..+ ....+..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~----------~~~~~~~ 70 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK----------FIKNMLA 70 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH----------HHHHHHh
Confidence 368999999999999999999864322221 2234545544455555 78999999999632 1122333
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|++++..... +....+..+. ..+ .+++|+|+||+|+..
T Consensus 71 ~~~--~ad~ii~V~d~~~~~~~-~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 71 GAG--GIDLVLLVVAADEGIMP-QTREHLEILE-LLG---IKRGLVVLTKADLVD 118 (164)
T ss_pred hhh--cCCEEEEEEECCCCccH-hHHHHHHHHH-HhC---CCcEEEEEECccccC
Confidence 343 46999999998753221 2333333332 222 248999999999754
No 64
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.21 E-value=1.1e-10 Score=121.10 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=78.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe-EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV-KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr-kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..++|+|+|.+|||||||+|.|++.... +.....+|.........+.+. .+.|+||||+.+.... ... ..+.....
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~-~~~~~~~~ 116 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY-AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLV-EAFRSTLE 116 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc-cCCccceeccceeEEEEecCCceEEEeCCCccccCCCH-HHH-HHHHHHHH
Confidence 3579999999999999999999997532 233334444444444445454 8999999998654211 111 11222222
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+. .+|++++|++++..... .+. .+.+.+.. ++ ....++|+|+||+|+.+.
T Consensus 117 ~~~--~~d~ii~v~D~~~~~~~-~~~~~~~~~l~~-~~-~~~~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVA--EADLLLHVVDASDPDYE-EQIETVEKVLKE-LG-AEDIPMILVLNKIDLLDD 168 (204)
T ss_pred HHh--cCCeEEEEEECCCCChh-hHHHHHHHHHHH-cC-cCCCCEEEEEEccccCCh
Confidence 233 46999999998865432 122 22333332 22 124799999999998653
No 65
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.20 E-value=2.1e-11 Score=133.04 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=107.3
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
-.|.+|++.|...--.+ ...+.+|+.... ..+.|+++++ ||+|-..+. .....+.. .+..+|+..
T Consensus 36 n~D~viiV~d~~~p~~s-~~~l~r~l~~~~---~~~i~~vIV~----NK~DL~~~~-~~~~~~~~----~~~~~g~~v-- 100 (245)
T TIGR00157 36 NIDQIVIVSSAVLPELS-LNQLDRFLVVAE---AQNIEPIIVL----NKIDLLDDE-DMEKEQLD----IYRNIGYQV-- 100 (245)
T ss_pred cCCEEEEEEECCCCCCC-HHHHHHHHHHHH---HCCCCEEEEE----ECcccCCCH-HHHHHHHH----HHHHCCCeE--
Confidence 34666777765532111 223445543110 0256888888 888842110 00111112 223566542
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccC----
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAF---- 720 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~---- 720 (1334)
+.+||..|.|+.+|+ ..+. ...++++|.||||||||||+|++.....++..
T Consensus 101 -------~~~SAktg~gi~eLf--~~l~----------------~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~ 155 (245)
T TIGR00157 101 -------LMTSSKNQDGLKELI--EALQ----------------NRISVFAGQSGVGKSSLINALDPSVKQQVNDISSKL 155 (245)
T ss_pred -------EEEecCCchhHHHHH--hhhc----------------CCEEEEECCCCCCHHHHHHHHhhhhhccccceeccC
Confidence 578999999988773 2111 23689999999999999999999866554432
Q ss_pred --CC-ceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch---hhHHHHHHHHHHHHhhCCCCEEEEEecC
Q 000717 721 --EP-GTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ---GVNRKVLASIKKFTKKCAPDIVLYVDRL 782 (1334)
Q Consensus 721 --~g-tTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d---~~~ekIlreIkkaIkkcgpDVVLLVIDa 782 (1334)
+. +|+..+.+.. .+. .|||||||+...+.. ......+.++..+...|++.=|.+....
T Consensus 156 ~~G~hTT~~~~l~~l--~~~--~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep 219 (245)
T TIGR00157 156 GLGKHTTTHVELFHF--HGG--LIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEP 219 (245)
T ss_pred CCCCCcCCceEEEEc--CCc--EEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCC
Confidence 22 4555555554 332 799999999875432 3345677888888999999888887544
No 66
>PRK13796 GTPase YqeH; Provisional
Probab=99.20 E-value=7.2e-11 Score=135.74 Aligned_cols=150 Identities=23% Similarity=0.210 Sum_probs=94.8
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+.+++++||...-..+..+.+.+++ .++|+++++ ||+|-.... .....+..++......+|+.+.
T Consensus 69 ~~~lIv~VVD~~D~~~s~~~~L~~~~--------~~kpviLVi----NK~DLl~~~-~~~~~i~~~l~~~~k~~g~~~~- 134 (365)
T PRK13796 69 SDALVVNVVDIFDFNGSWIPGLHRFV--------GNNPVLLVG----NKADLLPKS-VKKNKVKNWLRQEAKELGLRPV- 134 (365)
T ss_pred cCcEEEEEEECccCCCchhHHHHHHh--------CCCCEEEEE----EchhhCCCc-cCHHHHHHHHHHHHHhcCCCcC-
Confidence 34589999998764444443333322 256888888 887742100 0011222233334456776432
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCC-----cceecc
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEE-----KTSIHA 719 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee-----~a~Vss 719 (1334)
-+..+||..+.|+.+|+ +.+.... ...+++|+|.||||||||||+|++.. ...++.
T Consensus 135 -----~v~~vSAk~g~gI~eL~--~~I~~~~------------~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~ 195 (365)
T PRK13796 135 -----DVVLISAQKGHGIDELL--EAIEKYR------------EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSR 195 (365)
T ss_pred -----cEEEEECCCCCCHHHHH--HHHHHhc------------CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecC
Confidence 13578999999988883 3332211 23579999999999999999999542 344677
Q ss_pred CCCceeeEEEEEEEeCCeEEEEEeCCCCCCC
Q 000717 720 FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSS 750 (1334)
Q Consensus 720 ~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds 750 (1334)
.+++|+..+.+... ++ ..|+||||+...
T Consensus 196 ~pGTT~~~~~~~l~-~~--~~l~DTPGi~~~ 223 (365)
T PRK13796 196 FPGTTLDKIEIPLD-DG--SFLYDTPGIIHR 223 (365)
T ss_pred CCCccceeEEEEcC-CC--cEEEECCCcccc
Confidence 88888877665542 22 489999999754
No 67
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.20 E-value=7.4e-11 Score=134.12 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=85.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
-..|+|+|.||||||||+|+|.+.. ..+++++.+|.........+.+ .+++|+||||+.+..... ..+...+.++
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~---~gLg~~flrh 232 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG---AGLGHRFLKH 232 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc---ccHHHHHHHH
Confidence 3579999999999999999999874 4567777788777777777766 899999999997542111 1222334455
Q ss_pred HhhCCCCEEEEEecCCCccC--CCCcH-HHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTR--DLNDL-PLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~--e~qDl-~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
+.. .+++|||+|++.... ...+. .+.+.+.. +.. -..++.|||+||+|+..
T Consensus 233 ier--ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~-~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 233 IER--TRVLLHLIDISPLDGRDPIEDYEIIRNELKK-YSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred HHh--hCEEEEEEcCccccccCHHHHHHHHHHHHHH-hhhhhccCCEEEEEeCccCCC
Confidence 554 499999999886411 10122 22333332 222 23579999999999864
No 68
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.20 E-value=1.2e-10 Score=138.70 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=89.1
Q ss_pred ccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 686 LNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 686 l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
+..-..|+|||.||||||||+|+|.+.. ..+++++.+|.......+.+.+.+++|+||||+...... .+.+-..+.
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~---g~gLg~~fL 231 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE---GKGLGLDFL 231 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccch---hhHHHHHHH
Confidence 3445689999999999999999999874 456777888888877777888889999999999754211 122333444
Q ss_pred HHHhhCCCCEEEEEecCCCcc--C-CCCcHHHHH-HHHHHhc---------ccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQT--R-DLNDLPLLR-SITNALG---------TQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t--~-e~qDl~lLe-~IqeiFG---------~ea~K~tIIVLTK~D~L 820 (1334)
+++..| +++|||+|++... . ...+...+. .|..... .-..+|.|||+||+|+.
T Consensus 232 rhiera--dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 232 RHIERC--AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HHHHhc--CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 566655 9999999987431 1 112333222 3332221 22458999999999974
No 69
>PRK11058 GTPase HflX; Provisional
Probab=99.19 E-value=1.1e-10 Score=137.02 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=81.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.+|+|+|.||||||||+|+|++...+ +.+.+++|.+.......+.+ .++.|+||||+... ......+. +......+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~lve~-f~~tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDLVAA-FKATLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHHHHH-HHHHHHHh
Confidence 58999999999999999999998765 55666777776655555555 48899999998432 11111112 22222333
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .+|++|+|+|++..... .+...+..+...++ ....|+|+|+||+|+..
T Consensus 275 ~--~ADlIL~VvDaS~~~~~-e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 275 R--QATLLLHVVDAADVRVQ-ENIEAVNTVLEEID-AHEIPTLLVMNKIDMLD 323 (426)
T ss_pred h--cCCEEEEEEeCCCccHH-HHHHHHHHHHHHhc-cCCCCEEEEEEcccCCC
Confidence 3 47999999999865432 12222222222232 23479999999999864
No 70
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.19 E-value=1.8e-10 Score=109.10 Aligned_cols=118 Identities=23% Similarity=0.365 Sum_probs=80.4
Q ss_pred EEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCC
Q 000717 694 VLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCA 772 (1334)
Q Consensus 694 LVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcg 772 (1334)
|+|++|+|||||+|+|++..........++|........... +..+.++||||+.+..... ......+..++. .
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~~~--~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG---REREELARRVLE--R 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch---hhHHHHHHHHHH--h
Confidence 589999999999999999876656666666766665555554 6789999999998764321 111223334444 4
Q ss_pred CCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 773 PDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 773 pDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+|++++|+++...... ....++.... ....+.++|+||+|...+
T Consensus 76 ~d~il~v~~~~~~~~~-~~~~~~~~~~-----~~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 76 ADLILFVVDADLRADE-EEEKLLELLR-----ERGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCEEEEEEeCCCCCCH-HHHHHHHHHH-----hcCCeEEEEEEccccCCh
Confidence 6999999998876543 1222122221 245799999999998764
No 71
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=1e-10 Score=137.09 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=85.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
..|+|+|.||||||||||+|++.. ..+++++.+|.........+. +.+++|+||||+...... ...+...+.+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~---~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE---GVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccc---cchHHHHHHHHH
Confidence 379999999999999999999875 456777788888777766666 789999999999753211 112333344555
Q ss_pred hhCCCCEEEEEecCCCc-cCC-CCc-HHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 769 KKCAPDIVLYVDRLDSQ-TRD-LND-LPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~-t~e-~qD-l~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
..| +++|||+|++.. ..+ ..+ ..+.+.|......-..+|.|||+||+|+
T Consensus 235 er~--~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 235 ERT--RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred hhC--CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 544 999999998753 111 012 2334444432222246899999999996
No 72
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.18 E-value=4.5e-10 Score=109.05 Aligned_cols=122 Identities=22% Similarity=0.253 Sum_probs=77.3
Q ss_pred EEEEeecCCChhhhhhhhcCC-CcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 692 ILVLGKTGVGKSATINSIFGE-EKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGe-e~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
|+|+|.+|+|||||+|+|++. .....+...+.|.....+ ..+ ..++++||||+..........+.....+..++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEE--Ecc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999953 333334443444433332 222 3889999999977643322223333334444443
Q ss_pred C-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 771 C-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 771 c-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
. ..++++++++.+..... .+..+++++.. ...++++|+||+|.+.+
T Consensus 79 ~~~~~~~~~v~d~~~~~~~-~~~~~~~~l~~-----~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTE-IDLEMLDWLEE-----LGIPFLVVLTKADKLKK 125 (170)
T ss_pred ChhhhEEEEEEEcCcCCCH-hHHHHHHHHHH-----cCCCEEEEEEchhcCCh
Confidence 2 35788888887755332 34556666653 23789999999998654
No 73
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=132.18 Aligned_cols=159 Identities=19% Similarity=0.162 Sum_probs=106.7
Q ss_pred ccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 564 SQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 564 s~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
...|+++-+||+|.=+++.-..+.+++.. +|.+++. ||+|=-.. ..+..+...| ....|..+
T Consensus 33 ~~~d~vvevvDar~P~~s~~~~l~~~v~~--------k~~i~vl----NK~DL~~~--~~~~~W~~~~---~~~~~~~~- 94 (322)
T COG1161 33 KSVDVVVEVVDARDPLGTRNPELERIVKE--------KPKLLVL----NKADLAPK--EVTKKWKKYF---KKEEGIKP- 94 (322)
T ss_pred ccCCEEEEEEeccccccccCccHHHHHcc--------CCcEEEE----ehhhcCCH--HHHHHHHHHH---HhcCCCcc-
Confidence 36789999999998888877777777663 3556666 88884321 1122222222 23334444
Q ss_pred chhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHh--hhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCC
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAE--EKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE 721 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae--~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~ 721 (1334)
..+++.++.+...+. ..+.....+.... ...-....++++|+|.|||||||+||+|+++..+.+++.+
T Consensus 95 --------~~v~~~~~~~~~~i~--~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P 164 (322)
T COG1161 95 --------IFVSAKSRQGGKKIR--KALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP 164 (322)
T ss_pred --------EEEEeecccCccchH--HHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC
Confidence 477888877776662 1111111111111 1111235689999999999999999999999999999999
Q ss_pred CceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 722 PGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 722 gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
+.|+..+++.. ...+.|+||||+..+...
T Consensus 165 G~Tk~~q~i~~---~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 165 GTTKGIQWIKL---DDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred ceecceEEEEc---CCCeEEecCCCcCCCCcc
Confidence 99998888776 344799999999987543
No 74
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.15 E-value=3.9e-10 Score=113.02 Aligned_cols=114 Identities=14% Similarity=0.064 Sum_probs=75.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceec---------------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIH---------------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQG 755 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vs---------------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~ 755 (1334)
+|+|+|.+|+|||||+|+|++....... ...+.|.........+.+..+.||||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 5899999999999999999887543321 01123334444445566788999999997532
Q ss_pred hHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 756 VNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 756 ~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
......++. .+|++++|+++...... .+...+..+.. ...++++|+||+|+..+
T Consensus 76 -----~~~~~~~~~--~~d~~i~v~d~~~~~~~-~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 76 -----SSEVIRGLS--VSDGAILVVDANEGVQP-QTREHLRIARE-----GGLPIIVAINKIDRVGE 129 (189)
T ss_pred -----HHHHHHHHH--hcCEEEEEEECCCCCcH-HHHHHHHHHHH-----CCCCeEEEEECCCCcch
Confidence 112223344 35999999998765432 34444444432 45899999999998753
No 75
>PRK04213 GTP-binding protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=117.20 Aligned_cols=124 Identities=16% Similarity=0.182 Sum_probs=76.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC-cchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~-i~d~~~ekIlreIkk 766 (1334)
..++|+++|.+|||||||+|+|++.. +.++..+++|..+... .+. .+.++||||+.... ......+.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHY--DWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEE--eec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45899999999999999999999875 4455555566554433 232 68999999985432 221112222222333
Q ss_pred HHhh--CCCCEEEEEecCCCccCC----------CCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKK--CAPDIVLYVDRLDSQTRD----------LNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkk--cgpDVVLLVIDad~~t~e----------~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++.. ..++++++|++......- ..+..+++.+. ....|+|+|+||+|+..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-----ELGIPPIVAVNKMDKIK 144 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-----HcCCCeEEEEECccccC
Confidence 3331 135889999887643210 01233344433 23579999999999754
No 76
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.15 E-value=2.2e-10 Score=142.67 Aligned_cols=122 Identities=19% Similarity=0.249 Sum_probs=90.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc---hhhHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE---QGVNRKVLASIK 765 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~---d~~~ekIlreIk 765 (1334)
.++|+++|.||||||||+|+|+|... .+++.+++|.+.......+++.++.+|||||+.+.... ....+.+ .+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i---~~ 78 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQI---AC 78 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHH---HH
Confidence 47899999999999999999999854 67888888988877778888899999999999865321 1112222 23
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.++....+|++++|+|++...+ ...+...+. +...|+|+|+||+|..+.
T Consensus 79 ~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~-----e~giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLER---NLYLTLQLL-----ELGIPCIVALNMLDIAEK 127 (772)
T ss_pred HHHhccCCCEEEEEecCCcchh---hHHHHHHHH-----HcCCCEEEEEEchhhhhc
Confidence 3444456899999999886543 344444443 245899999999998654
No 77
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.15 E-value=2.8e-10 Score=120.21 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=77.2
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceecc------------------------------CCCceeeEEEEEEEeCCeEEE
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHA------------------------------FEPGTTSVKEIVGTVDGVKIR 740 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss------------------------------~~gtTt~~~~~~~evdGrkVt 740 (1334)
||+|+|++|+|||||+|+|+......... ..+.|.+.....+.++++++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 68999999999999999998755433210 145677776777788899999
Q ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 741 VIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 741 LIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
||||||+.+ ....+..++. .+|++|+|+++...... ++...+..+. .++ .+++|+|+||+|..
T Consensus 81 liDTpG~~~----------~~~~~~~~~~--~ad~~llVvD~~~~~~~-~~~~~~~~~~-~~~---~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQ----------YTRNMVTGAS--TADLAILLVDARKGVLE-QTRRHSYILS-LLG---IRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHH----------HHHHHHHhhh--hCCEEEEEEECCCCccH-hHHHHHHHHH-HcC---CCcEEEEEEchhcc
Confidence 999999632 1122223344 46999999998865432 3444443332 222 24678899999986
Q ss_pred C
Q 000717 821 P 821 (1334)
Q Consensus 821 e 821 (1334)
.
T Consensus 144 ~ 144 (208)
T cd04166 144 D 144 (208)
T ss_pred c
Confidence 4
No 78
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.13 E-value=6.7e-10 Score=117.59 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=80.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC------Ccceec---------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE------EKTSIH---------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe------e~a~Vs---------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
.++|+++|.+++|||||+++|++. ...... ...+.|.......+.++++++.||||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 478999999999999999999864 111000 1235566666666777889999999999742
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce-EEEEEeccCCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS-AIVTLTHAASAP 821 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~-tIIVLTK~D~Le 821 (1334)
....+...+. .+|++++|+++...... ++..+++.+.+ ...+ +|+++||+|++.
T Consensus 78 ------~~~~~~~~~~--~~D~~ilVvda~~g~~~-~~~~~~~~~~~-----~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 78 ------YIKNMITGAA--QMDGAILVVSATDGPMP-QTREHLLLARQ-----VGVPYIVVFLNKADMVD 132 (195)
T ss_pred ------HHHHHHHHhh--hCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCcEEEEEeCCCCCC
Confidence 2333444454 46999999998875433 46666766552 2344 789999999863
No 79
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.10 E-value=6.5e-10 Score=109.98 Aligned_cols=112 Identities=17% Similarity=0.151 Sum_probs=73.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC---CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD---GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd---GrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.|+|+|.+|+|||||+|+|++..... ...++.|........... +..+.+|||||.... ......+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~----------~~~~~~~ 70 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF----------TNMRARG 70 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-ccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH----------HHHHHHH
Confidence 58999999999999999999764332 222344554444444443 678999999996321 0111123
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|++++..... +....++.+.. ...|.++|+||+|+..
T Consensus 71 ~~--~~d~il~v~d~~~~~~~-~~~~~~~~~~~-----~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 71 AS--LTDIAILVVAADDGVMP-QTIEAIKLAKA-----ANVPFIVALNKIDKPN 116 (168)
T ss_pred Hh--hcCEEEEEEECCCCccH-HHHHHHHHHHH-----cCCCEEEEEEceeccc
Confidence 33 46999999998764321 23444554432 3478999999999753
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.10 E-value=6.7e-10 Score=109.40 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=73.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.||+++|++|||||||+|+|++..... ...+..+.+.......+++ .++.|+||||... ....+..+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~ 69 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cCCCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHHH
Confidence 379999999999999999999875433 2223333344444455555 3589999999421 11223334
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-...+..+....+ ...|+++|.||+|...
T Consensus 70 ~~--~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~D~~~ 119 (161)
T cd01861 70 IR--DSSVAVVVYDITNRQSFDNTDKWIDDVRDERG--NDVIIVLVGNKTDLSD 119 (161)
T ss_pred hc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEChhccc
Confidence 44 45999999998764321011223333332222 2479999999999864
No 81
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.09 E-value=1.3e-09 Score=112.82 Aligned_cols=114 Identities=20% Similarity=0.203 Sum_probs=72.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC------cceeccCCCceeeEEEEEEEeC--------------CeEEEEEeCCCCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE------KTSIHAFEPGTTSVKEIVGTVD--------------GVKIRVIDTPGLKS 749 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee------~a~Vss~~gtTt~~~~~~~evd--------------GrkVtLIDTPGL~d 749 (1334)
++|+++|.+|+|||||+|+|++.. ........++|.........+. +.++.++||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 589999999999999999999741 1111122345555444444443 6789999999973
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+.+.+..... .+|++++|+++...... ++...+... .. ...+.|+|+||+|...
T Consensus 80 ---------~~~~~~~~~~~--~~d~vi~VvD~~~~~~~-~~~~~~~~~-~~----~~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 80 ---------SLIRTIIGGAQ--IIDLMLLVVDATKGIQT-QTAECLVIG-EI----LCKKLIVVLNKIDLIP 134 (192)
T ss_pred ---------HHHHHHHHHHh--hCCEEEEEEECCCCccH-HHHHHHHHH-HH----cCCCEEEEEECcccCC
Confidence 12223323333 36899999998764322 233333322 22 2469999999999864
No 82
>PRK00098 GTPase RsgA; Reviewed
Probab=99.08 E-value=3.6e-10 Score=126.62 Aligned_cols=175 Identities=19% Similarity=0.174 Sum_probs=106.6
Q ss_pred ccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 564 SQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 564 s~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
...|.+|+++|...- .+.+..+.+|+.... ..++|++++. ||+|-... .+..+. ....+..+|+.
T Consensus 79 aniD~vllV~d~~~p-~~~~~~idr~L~~~~---~~~ip~iIVl----NK~DL~~~-~~~~~~----~~~~~~~~g~~-- 143 (298)
T PRK00098 79 ANVDQAVLVFAAKEP-DFSTDLLDRFLVLAE---ANGIKPIIVL----NKIDLLDD-LEEARE----LLALYRAIGYD-- 143 (298)
T ss_pred ecCCEEEEEEECCCC-CCCHHHHHHHHHHHH---HCCCCEEEEE----EhHHcCCC-HHHHHH----HHHHHHHCCCe--
Confidence 466888999998531 112233345532111 1257888888 88884211 011111 11223466763
Q ss_pred chhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCC--
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE-- 721 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~-- 721 (1334)
++.+||.++.|+..|+ .. + ....++|+|++|||||||||+|++.....++...
T Consensus 144 -------v~~vSA~~g~gi~~L~--~~----l------------~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 144 -------VLELSAKEGEGLDELK--PL----L------------AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred -------EEEEeCCCCccHHHHH--hh----c------------cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 3578999999987773 11 1 1346899999999999999999998766554332
Q ss_pred ----C-ceeeEEEEEEEeCCeEEEEEeCCCCCCCCc---chhhHHHHHHHHHHHHhhCCCCEEEEEec
Q 000717 722 ----P-GTTSVKEIVGTVDGVKIRVIDTPGLKSSGV---EQGVNRKVLASIKKFTKKCAPDIVLYVDR 781 (1334)
Q Consensus 722 ----g-tTt~~~~~~~evdGrkVtLIDTPGL~ds~i---~d~~~ekIlreIkkaIkkcgpDVVLLVID 781 (1334)
. +|+....+.... + ..||||||++...+ ........+..+..+...|+++-|.+...
T Consensus 199 ~~~G~htT~~~~~~~~~~-~--~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~c~h~~e 263 (298)
T PRK00098 199 LGRGKHTTTHVELYDLPG-G--GLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRNCTHLHE 263 (298)
T ss_pred CCCCCcccccEEEEEcCC-C--cEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCCC
Confidence 2 344344433322 2 37999999996533 22334556777778888888877777643
No 83
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6.9e-10 Score=134.49 Aligned_cols=123 Identities=23% Similarity=0.321 Sum_probs=96.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.++|+++|.|||||||++|+|+|. ...+++.++.|.+-........++++.+||.||++.-.... ..+++ .++++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~-~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S-~DE~V---ar~~l 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGA-NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS-EDEKV---ARDFL 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhcc-CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC-chHHH---HHHHH
Confidence 467999999999999999999998 56789999999999999999999999999999998764221 12333 45667
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDG 824 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDg 824 (1334)
.+.+||+++-|+|++...+. -.-.++.+ +...|+|+++|++|..++.+
T Consensus 78 l~~~~D~ivnVvDAtnLeRn--LyltlQLl------E~g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 78 LEGKPDLIVNVVDATNLERN--LYLTLQLL------ELGIPMILALNMIDEAKKRG 125 (653)
T ss_pred hcCCCCEEEEEcccchHHHH--HHHHHHHH------HcCCCeEEEeccHhhHHhcC
Confidence 77789999999999876542 22233333 35589999999999987754
No 84
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.07 E-value=1e-09 Score=109.02 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=72.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcc---eeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKT---SIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a---~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+|+|+|.+|+|||||+|.|++.... .......+|.........+++.++.++||||.... ......+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESL----------RSLWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhh----------HHHHHHH
Confidence 5899999999999999999875321 11111123333334455667899999999997532 1112233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
+. ++|++++|+++..... ......++...+.. ....|+|+|+||+|...
T Consensus 71 ~~--~~~~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 71 YA--ECHAIIYVIDSTDRER---FEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred hC--CCCEEEEEEECchHHH---HHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 44 5699999999875431 12233334433332 13479999999999754
No 85
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.07 E-value=4e-10 Score=125.60 Aligned_cols=178 Identities=16% Similarity=0.158 Sum_probs=109.5
Q ss_pred eeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcC
Q 000717 560 ITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLG 639 (1334)
Q Consensus 560 v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLG 639 (1334)
-.|-...|.+|+++|.+.... ....+.+||-... ..++|++++. ||+|-.... ..... ......+|
T Consensus 73 ~~i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~---~~~ip~iIVl----NK~DL~~~~--~~~~~----~~~~~~~g 138 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAE---AAGIEPVIVL----TKADLLDDE--EEELE----LVEALALG 138 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHH---HcCCCEEEEE----EHHHCCChH--HHHHH----HHHHHhCC
Confidence 345567788999999976551 2223444542110 1257888888 888842211 00111 11123466
Q ss_pred CCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceecc
Q 000717 640 YSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHA 719 (1334)
Q Consensus 640 lsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss 719 (1334)
+. ++.+||.++.|+.+|. . .+. ..+++++|++|||||||||+|+|.....++.
T Consensus 139 ~~---------v~~vSA~~g~gi~~L~--~----~L~------------~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~ 191 (287)
T cd01854 139 YP---------VLAVSAKTGEGLDELR--E----YLK------------GKTSVLVGQSGVGKSTLINALLPDLDLATGE 191 (287)
T ss_pred Ce---------EEEEECCCCccHHHHH--h----hhc------------cceEEEECCCCCCHHHHHHHHhchhhccccc
Confidence 53 2578999999987772 1 111 2578999999999999999999986654432
Q ss_pred C------C-CceeeEEEEEEEeCCeEEEEEeCCCCCCCC---cchhhHHHHHHHHHHHHhhCCCCEEEEEec
Q 000717 720 F------E-PGTTSVKEIVGTVDGVKIRVIDTPGLKSSG---VEQGVNRKVLASIKKFTKKCAPDIVLYVDR 781 (1334)
Q Consensus 720 ~------~-gtTt~~~~~~~evdGrkVtLIDTPGL~ds~---i~d~~~ekIlreIkkaIkkcgpDVVLLVID 781 (1334)
. + .+|+..+.+.....+ .|+||||+.+.. +........+.++..+...|++.=|.+...
T Consensus 192 v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~E 260 (287)
T cd01854 192 ISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCKFRDCTHTNE 260 (287)
T ss_pred eeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCC
Confidence 2 1 244444444442233 699999997654 333344567778888888898877777643
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.07 E-value=1e-09 Score=105.38 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=70.0
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe--CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV--DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev--dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|+|||||+|.|++....... .+..+.+........ ....+.++||||... .......+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~ 69 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENY-KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPSY 69 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCcc-CCceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHHH
Confidence 58999999999999999999987644331 111111222222333 346788999999632 11123344
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+. ..|++++|++++....-......+..+.... ....++++|+||+|..
T Consensus 70 ~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 70 YR--GAHGAILVYDITNRESFENLDKWLKELKEYA--PENIPIILVGNKIDLE 118 (159)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEEccccc
Confidence 44 3699999999876431101122233332211 1347999999999986
No 87
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.05 E-value=1.7e-09 Score=106.26 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=71.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCc-eeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG-TTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt-Tt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+|+|.+|||||||+|+|++..... ...++ +.+.......+.+ ..+.|+||||.... ......
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY----------LEVRNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH----------HHHHHH
Confidence 589999999999999999999875322 11121 1122222233333 46789999996321 111122
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc---cCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT---QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~---ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++|+|.+++....-..-...++.+.+...+ ....|+|+|.||+|+..
T Consensus 69 ~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYK--DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred Hhc--cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 333 469999999988653211122344444433332 13478999999999864
No 88
>CHL00071 tufA elongation factor Tu
Probab=99.04 E-value=1.6e-09 Score=126.12 Aligned_cols=117 Identities=13% Similarity=0.072 Sum_probs=81.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCccee-------c--------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSI-------H--------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~V-------s--------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|++++|||||+|+|++...... . ...+.|.++....+..+++++.||||||..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 3569999999999999999999997521110 0 114556666666667778899999999953
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce-EEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS-AIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~-tIIVLTK~D~Le 821 (1334)
..+..+...+. .+|++++|+++...... ++...+..+.. +| .+ +|+++||+|+..
T Consensus 87 -------~~~~~~~~~~~--~~D~~ilVvda~~g~~~-qt~~~~~~~~~-~g----~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 87 -------DYVKNMITGAA--QMDGAILVVSAADGPMP-QTKEHILLAKQ-VG----VPNIVVFLNKEDQVD 142 (409)
T ss_pred -------HHHHHHHHHHH--hCCEEEEEEECCCCCcH-HHHHHHHHHHH-cC----CCEEEEEEEccCCCC
Confidence 22333444454 46999999998865533 56666765542 22 45 778999999864
No 89
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.03 E-value=1.7e-09 Score=117.21 Aligned_cols=88 Identities=20% Similarity=0.335 Sum_probs=64.5
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+|+|.||+|||||+|+|.|.. ..+...+.+|..+......+.+.++.++||||+.+..... ......+..+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~---~~~~~~~l~~~~- 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG---KGRGRQVIAVAR- 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccc---hhHHHHHHHhhc-
Confidence 68999999999999999999975 3456667777777777777889999999999986542111 112222333444
Q ss_pred CCCCEEEEEecCCC
Q 000717 771 CAPDIVLYVDRLDS 784 (1334)
Q Consensus 771 cgpDVVLLVIDad~ 784 (1334)
.+|++|+|++++.
T Consensus 77 -~ad~il~V~D~t~ 89 (233)
T cd01896 77 -TADLILMVLDATK 89 (233)
T ss_pred -cCCEEEEEecCCc
Confidence 4599999998764
No 90
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.03 E-value=1.1e-09 Score=103.84 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=71.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.+||+++|.+|+|||||+|+|++.. +.....+..|..........++ ..+.++||||..+.. .....
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~--- 69 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR-------AIRRL--- 69 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccch-------HHHHH---
Confidence 3689999999999999999999987 5544444555555555566677 678999999954321 11111
Q ss_pred HHhhCCCCEEEEEecCCCccCCCC--cHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLN--DLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~q--Dl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+.. ..+.++++.++.....+.. ....+..+..... . ..|+++|+||+|....
T Consensus 70 ~~~--~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~-~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 70 YYR--AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-S-NVPIILVGNKIDLRDA 123 (161)
T ss_pred HHh--hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-c-CCcEEEEEEcccCCcc
Confidence 111 1244444444433311100 1123333333222 1 5789999999998653
No 91
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.01 E-value=4.1e-09 Score=103.69 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=71.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|++|+|||||+|+|++..... ...+..+.+.......+.+ .++.++||||... .......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSE-QYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 589999999999999999999875321 1111222223333445555 4678999999421 11222334
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.++.....- ..+.+++....... ...|+++|.||+|...
T Consensus 70 ~~--~~d~~ilv~d~~~~~s~---~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 70 YR--GAVGALLVYDITNRESF---ENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred hC--CCCEEEEEEECCCHHHH---HHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 44 46999999998765321 12223333221111 3579999999999764
No 92
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.01 E-value=2.1e-09 Score=113.34 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=75.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+|+|.+|||||||+|.+++..... ...+++. ........+++. ++.|+||||+...... ...........
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~--~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT--AGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc--ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCcc--chhHHHHHHHh
Confidence 489999999999999999999864322 2233433 333334456674 5779999998654211 11122222223
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc-ccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG-TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG-~ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++|+|.+++....-..-..+++.+.+.+. .....|+|||.||+|+..
T Consensus 77 ~~~--~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 77 GLR--NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 344 46999999998764321011222333333221 124479999999999854
No 93
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.00 E-value=2.3e-09 Score=105.80 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=69.5
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+++|++|+|||||+|+|++...... ..+++. ........+++ .++.|+||||-.. .......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~ 69 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN--QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPM 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHH
Confidence 6899999999999999999998764331 111111 11122233333 5678999999421 1111112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++++|++++....-......+..+..... ...++|+|.||.|...
T Consensus 70 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 70 YYR--GAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 333 46999999998754321112333444443221 3468999999999764
No 94
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.00 E-value=5e-09 Score=108.64 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=73.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC-cceec--------------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE-KTSIH--------------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ 754 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee-~a~Vs--------------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d 754 (1334)
.+|+++|.+|+|||||+|+|++.. .+... ...+.|.........+.+.++.|+||||..+.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~---- 78 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADF---- 78 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHH----
Confidence 479999999999999999998631 11110 01233444444556667889999999997532
Q ss_pred hhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 755 GVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 755 ~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+..++. .+|++++|+++...... +...+++.+. ....+.|+|+||+|+..
T Consensus 79 ------~~~~~~~~~--~~d~~ilV~d~~~~~~~-~~~~~~~~~~-----~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 79 ------GGEVERVLS--MVDGVLLLVDASEGPMP-QTRFVLKKAL-----ELGLKPIVVINKIDRPD 131 (194)
T ss_pred ------HHHHHHHHH--hcCEEEEEEECCCCccH-HHHHHHHHHH-----HcCCCEEEEEECCCCCC
Confidence 112233444 46999999998764321 2233333332 23478999999999864
No 95
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.00 E-value=3.3e-09 Score=104.59 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=71.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+++|.+|+|||||+|++++... +....+++.........+++. ++.|+||||..+.. . ....
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~---~~~~ 69 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------A---MREQ 69 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------H---HHHH
Confidence 47999999999999999999997642 233334443322333445554 67889999965321 1 1223
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++++|.+++....-..-...+..+..... ....|+|||.||+|+..
T Consensus 70 ~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 70 YMR--TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 344 35999999998764321001122222332211 23469999999999754
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.99 E-value=2.5e-09 Score=105.61 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=70.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|+|||||+|+|++...... ..+..+.+.......+.+ .++.|+||||.... ......+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPD-LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERF----------RTLTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcc-cCCcccceEEEEEEEECCEEEEEEEEECCCchhh----------hhhhHHH
Confidence 5899999999999999999998754221 111111122222223333 56899999995321 1112233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++ ..|++|+|.+++....-..-...+..+.+. ......+.++|.||+|...
T Consensus 70 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 70 YR--GAQGVILVYDVTRRDTFTNLETWLNELETY-STNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred hC--CCCEEEEEEECCCHHHHHhHHHHHHHHHHh-CCCCCCcEEEEEECCcccc
Confidence 44 459999999987643211112233333332 2234578999999999873
No 97
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.99 E-value=5.4e-09 Score=103.88 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=71.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
-++|+++|.+|||||||+|+|++..... ...+..+.+........++. .+.|+||||.... ......
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~ 71 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNL-DSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY----------RAITSA 71 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCChHHH----------HHHHHH
Confidence 3789999999999999999999875322 22222233333334445554 6789999995321 111123
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Le 821 (1334)
++. ..+++++|.+++.... -..+.+++..+.... ...|+++|.||+|+..
T Consensus 72 ~~~--~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 72 YYR--GAVGALLVYDITKKQT---FENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHC--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 344 3589999999875432 122333444332222 2368999999999754
No 98
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.98 E-value=3.4e-09 Score=117.68 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=79.1
Q ss_pred EEEEEeecCCChhhhhhhhcCCCc-----ceec------------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEK-----TSIH------------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~-----a~Vs------------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
+|+|+|.+|+|||||+|+|+.... ..+. ...+.|.......+.|.+.++.||||||..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df--- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDF--- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHH---
Confidence 589999999999999999973211 1111 11245666667778889999999999997542
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+.+++.. .|++|+|+++...... ++..+++.+. ...+|.|+++||+|...
T Consensus 78 -------~~~~~~~l~~--aD~ailVVDa~~g~~~-~t~~~~~~~~-----~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 78 -------TIEVERSLRV--LDGAVAVFDAVAGVEP-QTETVWRQAD-----RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred -------HHHHHHHHHH--cCEEEEEEECCCCCCH-HHHHHHHHHH-----HcCCCEEEEEECCCCCC
Confidence 1234445553 5999999998765432 4556666554 24478999999999753
No 99
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.98 E-value=4.3e-09 Score=106.01 Aligned_cols=119 Identities=17% Similarity=0.221 Sum_probs=73.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+|+|.+|||||||+|++++........ +..+.+.......+++ ..+.|+||||... ......
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 71 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDGKQIKLQIWDTAGQES----------FRSITR 71 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-CccceeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 45899999999999999999999875433221 1112222222333444 4689999999421 112223
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Lep 822 (1334)
.+++ .+|++|+|.+++.... -..+.+++.++... ....++|+|.||.|+..+
T Consensus 72 ~~~~--~~d~il~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 72 SYYR--GAAGALLVYDITRRET---FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124 (168)
T ss_pred HHhc--cCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 3444 4699999999885432 22334444433221 134689999999998743
No 100
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.98 E-value=2.8e-09 Score=110.40 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=79.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCccee------------c-----cCCCceeeEEEEEEE--eCCeEEEEEeCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSI------------H-----AFEPGTTSVKEIVGT--VDGVKIRVIDTPGLKS 749 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~V------------s-----s~~gtTt~~~~~~~e--vdGrkVtLIDTPGL~d 749 (1334)
-++|+++|..++|||||+++|++...... . ...+.|......... ..++.++||||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 47899999999999999999985432110 0 112445555566666 7899999999999531
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
....+.+.+. .+|++|+|+++...... +....++.+. ....|.|||+||+|.+
T Consensus 83 ----------f~~~~~~~~~--~~D~ailvVda~~g~~~-~~~~~l~~~~-----~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 ----------FIKEMIRGLR--QADIAILVVDANDGIQP-QTEEHLKILR-----ELGIPIIVVLNKMDLI 135 (188)
T ss_dssp ----------HHHHHHHHHT--TSSEEEEEEETTTBSTH-HHHHHHHHHH-----HTT-SEEEEEETCTSS
T ss_pred ----------eeecccceec--ccccceeeeeccccccc-cccccccccc-----ccccceEEeeeeccch
Confidence 2333444555 46999999999876532 4555565554 3446799999999986
No 101
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.98 E-value=1.6e-09 Score=108.71 Aligned_cols=112 Identities=24% Similarity=0.359 Sum_probs=69.0
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEE--------------------------------------
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT-------------------------------------- 733 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~e-------------------------------------- 733 (1334)
|+|+|..++|||||||+|+|.....++.. ++|.....+...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999876554433 333322211110
Q ss_pred ------------------eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHH
Q 000717 734 ------------------VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLL 795 (1334)
Q Consensus 734 ------------------vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lL 795 (1334)
.....+.||||||+....... . ..+.+++. ..|+||||.++...... .+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~---~---~~~~~~~~--~~d~vi~V~~~~~~~~~-~~~~~l 150 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEH---T---EITEEYLP--KADVVIFVVDANQDLTE-SDMEFL 150 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTT---S---HHHHHHHS--TTEEEEEEEETTSTGGG-HHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhh---H---HHHHHhhc--cCCEEEEEeccCcccch-HHHHHH
Confidence 001247899999997642211 1 34455665 45999999999875443 244444
Q ss_pred HHHHHHhcccCCceEEEEEecc
Q 000717 796 RSITNALGTQIWRSAIVTLTHA 817 (1334)
Q Consensus 796 e~IqeiFG~ea~K~tIIVLTK~ 817 (1334)
....+ .....+|+|+||+
T Consensus 151 ~~~~~----~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLD----PDKSRTIFVLNKA 168 (168)
T ss_dssp HHHHT----TTCSSEEEEEE-G
T ss_pred HHHhc----CCCCeEEEEEcCC
Confidence 43332 2334599999985
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.97 E-value=5.6e-09 Score=105.66 Aligned_cols=115 Identities=18% Similarity=0.276 Sum_probs=74.5
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+++|.+|||||||+|+|++.....+. + |.........+++.++.|+||||.... ......+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~---~-t~g~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTIS---P-TLGFQIKTLEYEGYKLNIWDVGGQKTL----------RPYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC---C-ccccceEEEEECCEEEEEEECCCCHHH----------HHHHHHH
Confidence 4689999999999999999999987432221 2 222223344556888999999996421 1112234
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|++++.... -..+..++...+.. ....|+|||+||+|+..
T Consensus 79 ~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 79 FE--STDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred hC--CCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 44 4699999999876532 11233334443321 13479999999999854
No 103
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.97 E-value=3.3e-09 Score=104.40 Aligned_cols=117 Identities=17% Similarity=0.141 Sum_probs=69.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+++|.+|||||||+|+|.+..... ....+ |...........+.++.|+||||..... .....++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~-~~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~~~~~- 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQS-QIIVP-TVGFNVESFEKGNLSFTAFDMSGQGKYR----------GLWEHYYK- 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCc-ceecC-ccccceEEEEECCEEEEEEECCCCHhhH----------HHHHHHHc-
Confidence 58999999999999999999864221 11111 2222222334567889999999964321 11123344
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc-ccCCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG-TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG-~ea~K~tIIVLTK~D~Le 821 (1334)
.+|+++||+|++....-......++.+.+... .....|++||+||+|+..
T Consensus 68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 46999999998754321001112222222111 123579999999999754
No 104
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.97 E-value=5.4e-09 Score=102.11 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=69.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+||+++|.+|+|||||+|++++..... ...+++ .........+.+ ..+.++||||-... .. ....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~---~~~~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HA---LGPI 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HH---hhHH
Confidence 489999999999999999999875432 111222 222222333334 36889999994211 11 1112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|.+++....-..-...++.+...... ..++|+|+||+|...
T Consensus 69 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 69 YYR--DADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 233 469999999987643210111233334433322 579999999999864
No 105
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.96 E-value=5e-09 Score=102.37 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=70.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|||||||+|++++.... ....+++.........+++. .+.++||||.... .. ....+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~---l~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SA---MRDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HH---HHHHH
Confidence 68999999999999999999976422 22233333322333445554 4678999996421 11 11224
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....- .+. ..+..+.+.. .....|+|||.||+|+..
T Consensus 70 ~~--~~~~~i~v~~~~~~~s~-~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 70 MR--TGEGFLCVFAINSRKSF-EDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred Hh--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 44 35899999888754321 111 2233333222 223579999999999864
No 106
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.96 E-value=9.9e-09 Score=101.69 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=69.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC-cceeccCCCcee-eEEEEEEEe---CCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE-KTSIHAFEPGTT-SVKEIVGTV---DGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee-~a~Vss~~gtTt-~~~~~~~ev---dGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
++|+++|.+|||||||+++|+... .+. ....+++. ++......+ ...++.++||||.... . ...
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~---~~~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFP-KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELY-------S---DMV 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcC-ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHH-------H---HHH
Confidence 589999999999999999998642 222 22222221 222222222 2357899999994211 1 112
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..++. .+|++++|.+++....- ..+..++..+.......++|+|.||+|+...
T Consensus 70 ~~~~~--~~d~ii~v~d~~~~~s~---~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 70 SNYWE--SPSVFILVYDVSNKASF---ENCSRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHHhC--CCCEEEEEEECcCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 33444 46999999998764321 1122333332222234799999999997543
No 107
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.96 E-value=6.2e-09 Score=103.09 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=70.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+|+|.+|||||||+|+|++....... .+..+.........+++ ..+.|+||||.... ......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDS-QHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERF----------RSVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC-CCceeeeEEEEEEEECCEEEEEEEEECcchHHH----------HHhHHHH
Confidence 58999999999999999999976432211 11112222223334444 46789999995321 1122233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++ .+|++++|.+++....-..-...+..++... ....++++|.||+|...
T Consensus 70 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 70 YR--GAAGALLVYDITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLAD 119 (161)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcch
Confidence 44 4699999999987543111122233332222 23468999999999865
No 108
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.96 E-value=7.5e-09 Score=103.33 Aligned_cols=119 Identities=9% Similarity=0.109 Sum_probs=72.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+|+|.+|+|||||+|++++....... .+..+.+.......+++ ..+.|+||||... .......
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ-GNTIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC-CCccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 589999999999999999999875322111 11111223333445555 4678999999421 1112223
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++. ..|++|+|++++....-......+..+.... ....|.|+|.||+|+...
T Consensus 72 ~~~--~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 72 YYR--SANGAIIAYDITRRSSFESVPHWIEEVEKYG--ASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECcccccc
Confidence 343 4699999999987542111223444443221 234689999999998643
No 109
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.95 E-value=1.1e-08 Score=105.77 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=73.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+++|.+|||||||+|.|.+.....+ .+|.........+++.++.++||||.... . .....+
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~---~~~~~~ 81 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELAIGNIKFTTFDLGGHQQA-------R---RLWKDY 81 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEEECCEEEEEEECCCCHHH-------H---HHHHHH
Confidence 458999999999999999999998743322 12333333445567889999999996421 1 112234
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~L 820 (1334)
+. ..|+++||++++.... -......+.+++.. ....|++||+||.|..
T Consensus 82 ~~--~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 82 FP--EVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred hC--CCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 44 4699999999875432 11122233333321 1347999999999974
No 110
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.95 E-value=7.6e-09 Score=103.16 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=70.7
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+|+|.+|||||||+|++++..... ...+..+.+.......+.+. ++.|+||||.... ......
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~ 70 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSS 70 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHHH
Confidence 3789999999999999999999764322 11122222333333444553 6789999995321 111223
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++|+|.+++.... -..+..++..+-.. ....+.|+|.||+|+..
T Consensus 71 ~~~--~~~~ii~v~d~~~~~s---~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 71 YYR--GAHGIIIVYDVTDQES---FNNVKQWLQEIDRYASENVNKLLVGNKCDLTD 121 (166)
T ss_pred HhC--cCCEEEEEEECcCHHH---HHhHHHHHHHHHHhCCCCCcEEEEEEChhccc
Confidence 333 4699999999876432 12233333322111 12468999999999754
No 111
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.95 E-value=3.9e-09 Score=105.82 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=71.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee--EEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~--~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|||||||+|++++..... ...+++.. ............+.++||||..... .+ . ..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~-~--~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRE--SYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP-------AM-Q--RLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCcchheEEEEEEECCEEEEEEEEECCCCCcch-------HH-H--HHH
Confidence 689999999999999999999764211 11121111 1111222233568899999975321 11 1 112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Le 821 (1334)
+. ..|++|+|.+++....-..-..+++.+.+..+.. ...|+|+|.||+|+..
T Consensus 70 ~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 70 IS--KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 33 4699999999876542111233445555544432 3469999999999854
No 112
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=1.5e-09 Score=122.17 Aligned_cols=91 Identities=25% Similarity=0.348 Sum_probs=66.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceec------cCCCceeeEEEEEEE-eCCeEEEEEeCCCCCCCCc---chhhHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIH------AFEPGTTSVKEIVGT-VDGVKIRVIDTPGLKSSGV---EQGVNRK 759 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vs------s~~gtTt~~~~~~~e-vdGrkVtLIDTPGL~ds~i---~d~~~ek 759 (1334)
-..+++|.+|||||||||+|.++....++ ..+.+||+....... -+| .|||||||+...+ .......
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~~ 241 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLVQ 241 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCcccCCHHHHHH
Confidence 36799999999999999999986554443 234556655444433 355 6999999998755 2334456
Q ss_pred HHHHHHHHHhhCCCCEEEEEecCC
Q 000717 760 VLASIKKFTKKCAPDIVLYVDRLD 783 (1334)
Q Consensus 760 IlreIkkaIkkcgpDVVLLVIDad 783 (1334)
.+.++..++..|++.-|.+.....
T Consensus 242 ~F~ef~~~~~~CkFr~C~H~~EPg 265 (301)
T COG1162 242 AFPEFAELARQCKFRDCTHTHEPG 265 (301)
T ss_pred HhHHHHHHhcCCCCCCCCCCCCCC
Confidence 788888888899998888876544
No 113
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.95 E-value=4.8e-09 Score=102.27 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=72.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
||+|+|++|+|||||+|+|++.. ......+++...........+ .++.++||||.... ......++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF----------SAMRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH----------HHHHHHHH
Confidence 58999999999999999999875 223334444444444444553 46789999996431 11122344
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. ..|++++|.+++....-..-..++..+..... ....|+++|.||+|...
T Consensus 69 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 69 R--QGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred h--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 4 35999999988764321111223333333222 23589999999999875
No 114
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.95 E-value=5e-09 Score=122.08 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=81.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceecc------------------------------CCCceeeEEEEEEEeCCe
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHA------------------------------FEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss------------------------------~~gtTt~~~~~~~evdGr 737 (1334)
..++|+++|++++|||||+|+|+......... ..+.|.++....+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 46899999999999999999998543332111 357788888888888899
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCC--ccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDS--QTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~--~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
++.||||||..+.. +.+...+. .+|++|+|+++.. ... .+....+..+. .++ .+++|||+|
T Consensus 85 ~i~liDtpG~~~~~----------~~~~~~~~--~aD~~ilVvDa~~~~~~~-~~~~~~~~~~~-~~~---~~~iivviN 147 (425)
T PRK12317 85 YFTIVDCPGHRDFV----------KNMITGAS--QADAAVLVVAADDAGGVM-PQTREHVFLAR-TLG---INQLIVAIN 147 (425)
T ss_pred EEEEEECCCcccch----------hhHhhchh--cCCEEEEEEEcccCCCCC-cchHHHHHHHH-HcC---CCeEEEEEE
Confidence 99999999964321 11112233 4699999999986 332 23445554443 233 147899999
Q ss_pred ccCCCC
Q 000717 816 HAASAP 821 (1334)
Q Consensus 816 K~D~Le 821 (1334)
|+|+..
T Consensus 148 K~Dl~~ 153 (425)
T PRK12317 148 KMDAVN 153 (425)
T ss_pred cccccc
Confidence 999864
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.94 E-value=7.1e-09 Score=102.33 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=68.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
+|+++|.+|||||||+|+|++....... + |.......... ....+.++||||.... ......++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~---~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~~~~~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI---P-TVGFNVEMLQLEKHLSLTVWDVGGQEKM----------RTVWKCYLE 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc---C-ccCcceEEEEeCCceEEEEEECCCCHhH----------HHHHHHHhc
Confidence 5899999999999999999987643321 1 22111112222 3468999999996421 111223344
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
..|+++||+|++.... -..+..++.+.+... ...|+++|+||+|..
T Consensus 67 --~~~~iv~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 67 --NTDGLVYVVDSSDEAR---LDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred --cCCEEEEEEECCcHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 4699999999876431 122333344433221 357999999999974
No 116
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.94 E-value=9.5e-09 Score=101.40 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=69.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCc-eeeEEEEEEEeC----CeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG-TTSVKEIVGTVD----GVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt-Tt~~~~~~~evd----GrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
++|+++|.+|+|||||+|++++..... ...++ +.+.......+. ..++.|+||||..+. ....
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK--DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF----------DAIT 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH----------HHhH
Confidence 489999999999999999999763211 11122 122222223333 457899999994211 1112
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..+++ ..|++++|.+++....- ..+..++..+.......|+|+|.||+|+...
T Consensus 69 ~~~~~--~~~~~v~v~d~~~~~s~---~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 69 KAYYR--GAQACILVFSTTDRESF---EAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHhc--CCCEEEEEEECCCHHHH---HHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 23444 46999999998765421 1223333322211234699999999998653
No 117
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.93 E-value=7.3e-09 Score=104.29 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=68.6
Q ss_pred EEEEEeecCCChhhhhhhhcCCCccee--------cc------CCCceeeEEEEEEEe-----CCeEEEEEeCCCCCCCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSI--------HA------FEPGTTSVKEIVGTV-----DGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~V--------ss------~~gtTt~~~~~~~ev-----dGrkVtLIDTPGL~ds~ 751 (1334)
+|+++|.+|||||||+|+|++...... .+ ..+.|.........+ .+..+.|+||||..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~- 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF- 80 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh-
Confidence 689999999999999999987432110 00 112233322222222 3456889999998542
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
...+..++. .+|++|+|+++...... ++...+..+. ....++|+|+||+|+.
T Consensus 81 ---------~~~~~~~~~--~ad~~i~v~D~~~~~~~-~~~~~~~~~~-----~~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 81 ---------SYEVSRSLA--ACEGALLLVDATQGVEA-QTLANFYLAL-----ENNLEIIPVINKIDLP 132 (179)
T ss_pred ---------HHHHHHHHH--hcCeEEEEEECCCCccH-hhHHHHHHHH-----HcCCCEEEEEECCCCC
Confidence 112233444 46999999998764321 2333333322 1346899999999974
No 118
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.93 E-value=8.4e-09 Score=102.53 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=69.8
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
||+|+|.+|+|||||+|+|....... ..+ |...........+.++.++||||.... . .....++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~---~~~~~~~~- 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIP-TIGFNVETVTYKNLKFQVWDLGGQTSI-------R---PYWRCYYS- 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCC-ccCcCeEEEEECCEEEEEEECCCCHHH-------H---HHHHHHhc-
Confidence 58999999999999999997654322 112 222222334456788999999997421 0 11223444
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
.+|++|+|++++....- ....+++...+.. ....|+|||+||+|+..
T Consensus 66 -~~~~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 66 -NTDAIIYVVDSTDRDRL---GTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred -CCCEEEEEEECCCHHHH---HHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 46999999998764321 1122333322221 13479999999999753
No 119
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.93 E-value=1.2e-08 Score=98.38 Aligned_cols=112 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc 771 (1334)
|+|+|++|+|||||+|+|.+.+... . ..+ |..........++..+.++||||.... ......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~-~-~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~-- 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSE-D-TIP-TVGFNMRKVTKGNVTLKVWDLGGQPRF----------RSMWERYCR-- 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCc-C-ccC-CCCcceEEEEECCEEEEEEECCCCHhH----------HHHHHHHHh--
Confidence 7999999999999999999874321 1 112 222222234456678999999996321 112233444
Q ss_pred CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 772 APDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 772 gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
.+|++++|++++....- .....++...+.. ....|+++|+||+|...
T Consensus 67 ~~d~ii~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 67 GVNAIVYVVDAADRTAL---EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred cCCEEEEEEECCCHHHH---HHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 46999999998754321 1122333332221 13468999999999754
No 120
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.93 E-value=1.2e-08 Score=101.32 Aligned_cols=120 Identities=15% Similarity=0.100 Sum_probs=69.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+|+|.+|+|||||+|+|++..... ...+..+.+.......+.+. ++.|+||||.... ......+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERF----------QSLGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCc-CcCCccceEEEEEEEEECCEEEEEEEEeCCChHHH----------HhHHHHH
Confidence 589999999999999999999874321 11111122222223345554 4678999995321 1112234
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Lep 822 (1334)
+. .+|++|+|.++.....-..-..+...+...+.. ....|+++|.||+|+..+
T Consensus 70 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (172)
T cd01862 70 YR--GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK 124 (172)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc
Confidence 44 469999999987543210011122222222221 124699999999999753
No 121
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.92 E-value=4.8e-09 Score=102.28 Aligned_cols=101 Identities=21% Similarity=0.301 Sum_probs=64.7
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+|+|.+|||||||+|+|++.... . ..|.. ..+.+ .+|||||.... .....+.+...+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~-~~t~~-----~~~~~---~~iDt~G~~~~------~~~~~~~~~~~~~- 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----Y-KKTQA-----VEYND---GAIDTPGEYVE------NRRLYSALIVTAA- 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----c-cccee-----EEEcC---eeecCchhhhh------hHHHHHHHHHHhh-
Confidence 7999999999999999999987531 1 12221 12222 68999997311 1222333333333
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+|++++|.+++..... .+..+++ .+. ++.|+|+||+|+.+
T Consensus 62 -~ad~vilv~d~~~~~s~-~~~~~~~----~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 -DADVIALVQSATDPESR-FPPGFAS----IFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred -cCCEEEEEecCCCCCcC-CChhHHH----hcc----CCeEEEEEeeccCC
Confidence 57999999999876543 2322222 222 48999999999754
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.92 E-value=6.3e-09 Score=102.73 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=71.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
||+++|.+|||||||+|++++...... ..|.........+.+..+.++||||.... . .....++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~~-------~---~~~~~~~~- 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVEYKNVSFTVWDVGGQDKI-------R---PLWKHYYE- 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEEECCEEEEEEECCCChhh-------H---HHHHHHhc-
Confidence 589999999999999999998862211 12222233344556788999999996432 1 11223444
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Lep 822 (1334)
..|++++|.|++....- .....++..++.. ....++++|+||+|....
T Consensus 66 -~~~~~i~v~D~~~~~~~---~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 66 -NTNGIIFVVDSSDRERI---EEAKEELHKLLNEEELKGVPLLIFANKQDLPGA 115 (158)
T ss_pred -cCCEEEEEEECCCHHHH---HHHHHHHHHHHhCcccCCCcEEEEeeccCCccc
Confidence 45999999998865211 1122333332221 235799999999998653
No 123
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.92 E-value=7.1e-09 Score=102.15 Aligned_cols=117 Identities=19% Similarity=0.173 Sum_probs=71.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+|+|.+|||||||+|+++..... ....+++.........+++. .+.|+||||..... .+ ...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~---~~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-------AM---RDLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc-------hH---HHHH
Confidence 68999999999999999999976422 22334443333334445554 56789999964321 01 1122
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-...++.+.+... ....|+|+|.||+|+..
T Consensus 70 ~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 70 IK--NGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 33 46999999998764321111223333433222 23579999999999764
No 124
>PLN03127 Elongation factor Tu; Provisional
Probab=98.92 E-value=1.4e-08 Score=120.06 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=81.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcC------CCcceec---------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFG------EEKTSIH---------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLG------ee~a~Vs---------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|+.++|||||+++|++ ....... ...+.|.++....++.+++++.||||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 3569999999999999999999973 2211111 1146677777777777888999999999853
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce-EEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS-AIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~-tIIVLTK~D~Le 821 (1334)
.+..+...+. .+|++++|+++...... ++...+..+.. + ..+ +|+++||+|++.
T Consensus 137 --------f~~~~~~g~~--~aD~allVVda~~g~~~-qt~e~l~~~~~-~----gip~iIvviNKiDlv~ 191 (447)
T PLN03127 137 --------YVKNMITGAA--QMDGGILVVSAPDGPMP-QTKEHILLARQ-V----GVPSLVVFLNKVDVVD 191 (447)
T ss_pred --------hHHHHHHHHh--hCCEEEEEEECCCCCch-hHHHHHHHHHH-c----CCCeEEEEEEeeccCC
Confidence 1222222333 47999999998765433 56677766652 2 345 578899999864
No 125
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.91 E-value=1.1e-08 Score=105.07 Aligned_cols=117 Identities=10% Similarity=0.095 Sum_probs=70.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee-EEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS-VKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~-~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+||+|+|.+|||||||+|++++.. +......+++.. .......+++. .+.|+||||..... .+ ...
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~---~~~ 69 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE-------AM---SRI 69 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhh-------hh---hHh
Confidence 589999999999999999999764 332223233222 22223455565 45699999964321 11 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++. ..|++|+|.+++....- ..+..++..+.......|+|+|.||+|+...
T Consensus 70 ~~~--~~d~iilv~d~~~~~s~---~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 120 (193)
T cd04118 70 YYR--GAKAAIVCYDLTDSSSF---ERAKFWVKELQNLEEHCKIYLCGTKSDLIEQ 120 (193)
T ss_pred hcC--CCCEEEEEEECCCHHHH---HHHHHHHHHHHhcCCCCCEEEEEEccccccc
Confidence 233 46999999998765321 1122233332222235799999999997643
No 126
>PLN03118 Rab family protein; Provisional
Probab=98.91 E-value=6.5e-09 Score=109.35 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=71.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+|+|.+|||||||+|+|++.......+ ..+.+.......+++ ..+.|+||||..... ....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 80 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAP--TIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR----------TLTS 80 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCC--CceeEEEEEEEEECCEEEEEEEEECCCchhhH----------HHHH
Confidence 46899999999999999999999875422221 111222223334444 468899999964321 1112
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.++. ..|++|+|.+++....- .+. ..+..+...+......+.|+|.||+|+..
T Consensus 81 ~~~~--~~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 81 SYYR--NAQGIILVYDVTRRETF-TNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHh--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 3344 46999999998764321 111 11211222233333468899999999764
No 127
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.91 E-value=6.6e-10 Score=115.71 Aligned_cols=117 Identities=25% Similarity=0.308 Sum_probs=71.3
Q ss_pred HHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCC
Q 000717 633 RLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 633 rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
..+..+|+.. +.+|+..+.|+..|. ..+ ..-.++|+|.+|||||||||+|++.
T Consensus 6 ~~y~~~gy~v---------~~~S~~~~~g~~~l~------~~l------------~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 6 EQYEKLGYPV---------FFISAKTGEGIEELK------ELL------------KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp HHHHHTTSEE---------EE-BTTTTTTHHHHH------HHH------------TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred HHHHHcCCcE---------EEEeCCCCcCHHHHH------HHh------------cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899875 578999888877762 111 1257899999999999999999998
Q ss_pred Ccceecc------CCCceee-EEEEEEEeCCeEEEEEeCCCCCCCCcch---hhHHHHHHHHHHHHhhCCCCEEEEE
Q 000717 713 EKTSIHA------FEPGTTS-VKEIVGTVDGVKIRVIDTPGLKSSGVEQ---GVNRKVLASIKKFTKKCAPDIVLYV 779 (1334)
Q Consensus 713 e~a~Vss------~~gtTt~-~~~~~~evdGrkVtLIDTPGL~ds~i~d---~~~ekIlreIkkaIkkcgpDVVLLV 779 (1334)
....+.. .+.+||+ ...+.. ..+ ..|||||||++..+.. ......+.++..+...|++.-|.+.
T Consensus 59 ~~~~t~~is~~~~rGkHTTt~~~l~~l-~~g--~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~CkF~~C~H~ 132 (161)
T PF03193_consen 59 AKQKTGEISEKTGRGKHTTTHRELFPL-PDG--GYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQCKFRDCTHI 132 (161)
T ss_dssp S----S--------------SEEEEEE-TTS--EEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHSSSTTTTSS
T ss_pred cchhhhhhhcccCCCcccCCCeeEEec-CCC--cEEEECCCCCccccccCCHHHHHHHHHHhccccCCCCccCCCCC
Confidence 6554432 2344443 443333 233 3899999999885442 2333456677888888887655553
No 128
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.91 E-value=5e-09 Score=103.97 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=69.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC--CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD--GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd--GrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|+|||||+|+|++..... ...++............ ...+.++||||....... . ..+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~--------~--~~~ 68 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPT--EYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRL--------R--PLS 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccc--------c--hhh
Confidence 589999999999999999999875411 11122222222222333 346899999997543110 0 011
Q ss_pred HhhCCCCEEEEEecCCCccCC-CCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRD-LNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e-~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepD 823 (1334)
+. ..|++++|.+++....- ......+..+.. .....|+++|.||+|+..+.
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 69 YP--NTDVFLICFSVDSPSSFENVKTKWIPEIRH---YCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred cC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hCCCCCEEEEEccHHhhhch
Confidence 22 46999999998763321 001112222322 22258999999999987653
No 129
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.90 E-value=7.2e-09 Score=102.67 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=70.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.||+|+|.+|||||||+|++++..... ...+++.........+++. .+.++||||..+.. . ....+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~---~~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-------A---MRDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-------H---HHHHH
Confidence 389999999999999999999865322 2223333333334445553 67789999965321 1 11223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-......+.+... ....|+|+|.||+|+..
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 69 MR--TGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLES 119 (164)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 34 35899999988754321001122233333222 22468999999999764
No 130
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.89 E-value=1.9e-08 Score=102.47 Aligned_cols=114 Identities=13% Similarity=0.106 Sum_probs=73.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.++|+++|.+|+|||||+|.|++...... ..|.........+++.++.++||||.... ......++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIVYKNIRFLMWDIGGQESL----------RSSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEEECCeEEEEEECCCCHHH----------HHHHHHHh
Confidence 57999999999999999999987643322 12222233345567889999999996421 11122334
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
. ++|+++||++++.... -....+.+.+.+... ...|++|++||.|+..
T Consensus 81 ~--~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 81 T--NTDAVILVIDSTDRER---LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred h--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 4 4699999999875432 112223344333322 2479999999999743
No 131
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.88 E-value=1.8e-08 Score=102.66 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=72.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+++|.+|||||||+++|....... ..+ |.............++.++||||.... ... ...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~---~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~---~~~~ 73 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT---TIP-TVGFNVETVTYKNVKFNVWDVGGQDKI-------RPL---WRHY 73 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc---ccC-CcccceEEEEECCEEEEEEECCCCHHH-------HHH---HHHH
Confidence 35899999999999999999998654321 112 222222233456788999999996421 111 1223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
+. ++|++|||+|++.... -..+.+++.+.+... ...|++||.||+|+.
T Consensus 74 ~~--~a~~ii~v~D~t~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 74 YT--GTQGLIFVVDSADRDR---IDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred hc--cCCEEEEEEeCCchhh---HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 44 4699999999886432 122344444444321 346899999999974
No 132
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.88 E-value=1.3e-08 Score=102.26 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=70.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..+||+++|.+|||||||+|++++..... .-.+..+.+.......+.+ ..+.|+||||.... .....
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~----------~~~~~ 70 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERF----------RTITT 70 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHHH----------HHHHH
Confidence 35899999999999999999999764211 1111111122222334445 36789999995321 11122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
.+++ ..|++++|.+++....- ..+.+++..+... ....+++||.||+|+..
T Consensus 71 ~~~~--~ad~~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 71 AYYR--GAMGIILVYDITDEKSF---ENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHhC--CCCEEEEEEECcCHHHH---HhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 3344 46999999998754321 1222333322211 23468999999999864
No 133
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.88 E-value=2.8e-09 Score=101.02 Aligned_cols=116 Identities=24% Similarity=0.196 Sum_probs=69.7
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcc---eeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKT---SIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a---~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
||+|+|.+||||||||++|++.... ......+.+..............+.++|++|....... ...+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQ----------HQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCT----------SHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccc----------ccch
Confidence 7999999999999999999987654 11122233333332333223345889999997332110 0011
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAA 818 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D 818 (1334)
+. ..|++++|.+++....-..-..+++++..........|+|+|.||.|
T Consensus 71 ~~--~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LK--KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HH--HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hh--cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 33 35999999998875421111235566666554445589999999988
No 134
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.88 E-value=1.7e-08 Score=102.38 Aligned_cols=112 Identities=13% Similarity=0.155 Sum_probs=71.2
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+++|.+|||||||+|.|.+.......+ |...........+..+.++||||-... ......++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~~~- 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAP----TVGFTPTKLRLDKYEVCIFDLGGGANF----------RGIWVNYYA- 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccC----cccceEEEEEECCEEEEEEECCCcHHH----------HHHHHHHHc-
Confidence 48999999999999999999863222221 222223344567889999999995321 111234454
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
..|+++||+|++.... -..+..++..++... ...|++||.||.|+..
T Consensus 66 -~a~~ii~V~D~s~~~s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 114 (167)
T cd04161 66 -EAHGLVFVVDSSDDDR---VQEVKEILRELLQHPRVSGKPILVLANKQDKKN 114 (167)
T ss_pred -CCCEEEEEEECCchhH---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcC
Confidence 4599999999876532 112233344333321 3579999999999754
No 135
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.88 E-value=1.8e-08 Score=103.01 Aligned_cols=115 Identities=13% Similarity=0.096 Sum_probs=74.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
...+|+|+|.+|||||||+|+|.+...... ..|.........+++..+.++||||.... ......+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~----~~T~~~~~~~i~~~~~~~~l~D~~G~~~~----------~~~~~~~ 83 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH----VPTLHPTSEELTIGNIKFKTFDLGGHEQA----------RRLWKDY 83 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc----CCccCcceEEEEECCEEEEEEECCCCHHH----------HHHHHHH
Confidence 468999999999999999999998653221 11332333455667889999999995311 1112234
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
+. .+|++++|+++.....- .....++.+.+.. ....|+|||+||+|+..
T Consensus 84 ~~--~ad~iilV~D~~~~~s~---~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 84 FP--EVDGIVFLVDAADPERF---QESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred hc--cCCEEEEEEECCcHHHH---HHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 44 46999999998754211 1233444444432 23479999999999753
No 136
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.88 E-value=1.9e-08 Score=100.98 Aligned_cols=112 Identities=14% Similarity=0.147 Sum_probs=67.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
++|+|+|.+|||||||++++++...... ...|. .........++. .+.|+||||.... .....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQ---QLSTYALTLYKHNAKFEGKTILVDFWDTAGQERF----------QTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC---cCCceeeEEEEEEEEECCEEEEEEEEeCCCchhh----------hhhhH
Confidence 5899999999999999999987642211 11121 222223334443 6789999995321 11122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
.++. ..|++|+|.+++...........+..+.+. ....|+|+|.||+|+
T Consensus 68 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~p~ivv~nK~Dl 116 (161)
T cd04124 68 SYYH--KAHACILVFDVTRKITYKNLSKWYEELREY---RPEIPCIVVANKIDL 116 (161)
T ss_pred HHhC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEECccC
Confidence 3344 469999999987643211112333334322 234799999999997
No 137
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.88 E-value=1.5e-08 Score=102.66 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=72.8
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
||+++|.+|||||||+|+|.+... ... .+|.........+.+.++.|+||||..... .....++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~---~~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~----------~~~~~~~~- 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF---MQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLR----------PLWKHYYL- 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC---CCc-CCcCceeEEEEEECCEEEEEEECCCChhcc----------hHHHHHhc-
Confidence 589999999999999999998632 122 233333334456678899999999975321 11122333
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
..|+++||++++.... -..+..++...+... ...++|||.||.|+.
T Consensus 66 -~ad~ii~V~D~s~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 66 -NTQAVVFVVDSSHRDR---VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred -cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 4699999999876432 122344555444321 236899999999974
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.87 E-value=2.6e-08 Score=99.84 Aligned_cols=116 Identities=19% Similarity=0.214 Sum_probs=73.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
...++|+|+|++|+|||||+|.|.+.......+ |.........+.+..+.++||||.... ......
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~----t~g~~~~~i~~~~~~~~~~D~~G~~~~----------~~~~~~ 77 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITP----TQGFNIKTVQSDGFKLNVWDIGGQRAI----------RPYWRN 77 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCC----CCCcceEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence 357999999999999999999999975432222 222222344556889999999996321 122233
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|+++.....- .....++...+.. ....|+++++||+|...
T Consensus 78 ~~~--~~~~ii~v~D~~~~~~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 78 YFE--NTDCLIYVIDSADKKRL---EEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred Hhc--CCCEEEEEEeCCCHHHH---HHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 444 45999999998753210 1122222222211 23479999999999754
No 139
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.87 E-value=1.3e-08 Score=104.91 Aligned_cols=117 Identities=17% Similarity=0.176 Sum_probs=69.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe---CCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV---DGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev---dGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
.++|+++|.+|||||||+|++++..... ..+..+.........+ .+..+.++||||.... .....
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~~~~ 70 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN--TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL----------RPLWK 70 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC--cCCccccceeEEEeeccCCCceEEEEEECCCcHhH----------HHHHH
Confidence 5899999999999999999998764321 1111111222222222 4578999999995321 11112
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.++. ..|++|||++++....-..-...+..+.+... ....|+|||+||+|..
T Consensus 71 ~~~~--~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 71 SYTR--CTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 2333 46999999998764321001112222322222 2457999999999974
No 140
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.86 E-value=1.6e-08 Score=104.70 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=69.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+||+|+|.+|||||||+|.+++... ......+++. ........+++ .++.|+||||-.. .......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTHA 69 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhHH
Confidence 4899999999999999999987643 2222222222 22222334444 4678999999321 1111122
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|++++....-..-...+..+.+... ...|+|+|.||+|+..
T Consensus 70 ~~~--~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 70 YYR--DAHALLLLYDITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSG 120 (191)
T ss_pred Hcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchh
Confidence 333 46999999998764321011223333333221 2468999999999864
No 141
>PRK12735 elongation factor Tu; Reviewed
Probab=98.86 E-value=2.5e-08 Score=115.85 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=78.7
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCC------Cccee----c-----cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGE------EKTSI----H-----AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGe------e~a~V----s-----s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|.+++|||||+|+|++. ..+.. . ...+.|.++....+..++.++.||||||..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA--- 86 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH---
Confidence 46799999999999999999999962 11110 0 123566666666666778899999999963
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE-EEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI-VTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI-IVLTK~D~Le 821 (1334)
..+..+...+. .+|++|+|+++...... +....+..+. .+ ..+.| +++||+|+..
T Consensus 87 -------~f~~~~~~~~~--~aD~~llVvda~~g~~~-qt~e~l~~~~-~~----gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 87 -------DYVKNMITGAA--QMDGAILVVSAADGPMP-QTREHILLAR-QV----GVPYIVVFLNKCDMVD 142 (396)
T ss_pred -------HHHHHHHhhhc--cCCEEEEEEECCCCCch-hHHHHHHHHH-Hc----CCCeEEEEEEecCCcc
Confidence 22233334444 57999999998865432 4555555443 22 35544 6799999864
No 142
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.86 E-value=2.2e-08 Score=109.86 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=74.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcce-----ecc------C------CCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTS-----IHA------F------EPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~-----Vss------~------~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
+|+|+|.+|+|||||+|+|++..... +.. . .+.|.......+.+.+.++.||||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 58999999999999999998643211 100 0 012223334556778899999999997431
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+..++.. .|++++|++++..... +...+++.+. ....|.++|+||+|...
T Consensus 78 -------~~~~~~~l~~--aD~~i~Vvd~~~g~~~-~~~~~~~~~~-----~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 78 -------VGETRAALRA--ADAALVVVSAQSGVEV-GTEKLWEFAD-----EAGIPRIIFINKMDRER 130 (268)
T ss_pred -------HHHHHHHHHH--CCEEEEEEeCCCCCCH-HHHHHHHHHH-----HcCCCEEEEEECCccCC
Confidence 1233345553 5999999998876432 3344555443 23478999999999753
No 143
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.85 E-value=1.8e-08 Score=100.41 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=70.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|||||||+|+++... + .....+++.........+++. .+.|+||||..... .+. ..+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-------AMR---DLY 69 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccch-------hHH---HHH
Confidence 689999999999999999998542 2 222334444333344555554 45689999964321 111 112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-...+..+.+... ....|+|||.||+|+..
T Consensus 70 ~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 70 MK--NGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 33 46899999988754321011223333332211 23469999999999854
No 144
>COG2262 HflX GTPases [General function prediction only]
Probab=98.85 E-value=9.9e-09 Score=119.04 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=82.8
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.-..|.++|.||+|||||+|+|.+.....- +.-..|-+.......+ +|+++.+.||-||.+. ....++..++.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~-d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-----LP~~LV~AFks 264 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA-DQLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-----LPHPLVEAFKS 264 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc-ccccccccCceeEEEeCCCceEEEecCccCccc-----CChHHHHHHHH
Confidence 457899999999999999999998765432 2223333333223333 3789999999999764 22344555554
Q ss_pred HHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+... .+|++|+|+|++.+....+-....+.+. -+|.. ..|+|+|+||.|.+.+
T Consensus 265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~-el~~~-~~p~i~v~NKiD~~~~ 319 (411)
T COG2262 265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLA-EIGAD-EIPIILVLNKIDLLED 319 (411)
T ss_pred HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHH-HcCCC-CCCEEEEEecccccCc
Confidence 44433 4799999999987743211222223333 23322 2799999999998865
No 145
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.85 E-value=3.6e-08 Score=98.90 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=69.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+++|.+|||||||+|+|++..... ...+++ .+........++ ..+.++||||..+. . .....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~-------~---~~~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS--AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERY-------R---TITTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHH-------H---HHHHH
Confidence 689999999999999999999865321 111211 122222223333 46899999995321 0 11122
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Lep 822 (1334)
+++ ..|++|+|.+++.... -..+.+++..+.... ...|+++|.||+|+...
T Consensus 70 ~~~--~~~~~l~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 70 YYR--GAMGFILMYDITNEES---FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred Hcc--CCcEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 333 5799999999875432 122333333332211 24689999999998643
No 146
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.85 E-value=2.5e-08 Score=105.59 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=70.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeC---CeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVD---GVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evd---GrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
++|+|+|.+|||||||+|.+++... . ....++. .+.......+. ...+.|+||||.... . ..+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~---~l~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-G-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------G---KMLD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-C-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------H---HHHH
Confidence 5899999999999999999997642 1 1222222 23323334443 357889999994211 1 1122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
.++. .+|++|+|.+++....-..-...+..+.+.... ....++|+|.||+|+..
T Consensus 69 ~~~~--~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 69 KYIY--GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 3343 469999999988653211112234444444332 22346899999999864
No 147
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.85 E-value=3.1e-08 Score=100.03 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=68.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC------------CeEEEEEeCCCCCCCCcchhh
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD------------GVKIRVIDTPGLKSSGVEQGV 756 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd------------GrkVtLIDTPGL~ds~i~d~~ 756 (1334)
.++|+++|.+|||||||+|++.+..... ...+..+.+.......+. ...+.|+||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNP-KFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 4899999999999999999998753211 111111111111122221 25788999999421
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCCC
Q 000717 757 NRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 757 ~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~Le 821 (1334)
.......++. ..|++++|.+++.... -..+..++..+... ....|+|+|.||+|+..
T Consensus 76 ---~~~~~~~~~~--~~~~~i~v~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 76 ---FRSLTTAFFR--DAMGFLLIFDLTNEQS---FLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred ---HHHHHHHHhC--CCCEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 1111223344 4699999999875432 12233333332221 12468999999999864
No 148
>PRK00049 elongation factor Tu; Reviewed
Probab=98.85 E-value=3.1e-08 Score=115.25 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=80.7
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCC------cceec---------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEE------KTSIH---------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee------~a~Vs---------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|..++|||||+++|++.. ..... ...+.|.++....+..+++++.||||||..
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~--- 86 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH---
Confidence 457999999999999999999999731 10100 123566666666666778899999999963
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE-EEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI-VTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI-IVLTK~D~Le 821 (1334)
..+..+...+. .+|++++|+++...... ++..++..+.. + ..+.| +++||+|+..
T Consensus 87 -------~f~~~~~~~~~--~aD~~llVVDa~~g~~~-qt~~~~~~~~~-~----g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 87 -------DYVKNMITGAA--QMDGAILVVSAADGPMP-QTREHILLARQ-V----GVPYIVVFLNKCDMVD 142 (396)
T ss_pred -------HHHHHHHhhhc--cCCEEEEEEECCCCCch-HHHHHHHHHHH-c----CCCEEEEEEeecCCcc
Confidence 22333334443 57999999998875432 56667766552 2 35655 6899999864
No 149
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.84 E-value=4.6e-08 Score=107.62 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=79.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEE--------------------------------------
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEI-------------------------------------- 730 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~-------------------------------------- 730 (1334)
..+|+|+|.+|+||||++|+|+|......+. +.+|+....+
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~-g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGS-GIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCccccCC-CcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999974222211 1111111100
Q ss_pred -----------EEEeC---CeEEEEEeCCCCCCCCc---chhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCc-H
Q 000717 731 -----------VGTVD---GVKIRVIDTPGLKSSGV---EQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLND-L 792 (1334)
Q Consensus 731 -----------~~evd---GrkVtLIDTPGL~ds~i---~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qD-l 792 (1334)
..++. ...++||||||+..... .....+.+.+.+..+++.. .+++|+|+++...... ++ +
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~-~~IIL~Vvda~~d~~~-~d~l 182 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE-ECLILAVTPANVDLAN-SDAL 182 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc-cCeEEEEEECCCCCCc-hhHH
Confidence 00111 13579999999975421 1223344556677777742 4699999987654332 34 4
Q ss_pred HHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 793 PLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 793 ~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+++++. ..++++|+|+||+|.+.+
T Consensus 183 ~ia~~ld-----~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 183 KLAKEVD-----PQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHH-----HcCCcEEEEEECCCCCCc
Confidence 5665554 356899999999999865
No 150
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.84 E-value=9.7e-09 Score=102.54 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=70.8
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
+|+|+|.+|||||||+++++.... .....+++.........+++. .+.|+||||....... ....++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTE---------QLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccc---------hHHHHH
Confidence 589999999999999999986432 222333332222333445555 5789999997642110 112234
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .+|++++|.+++....-..-..++..+..........|+|+|.||+|+..
T Consensus 70 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 70 R--WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred H--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 4 36999999999865321011223333443221123578999999999643
No 151
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.84 E-value=1.5e-08 Score=123.45 Aligned_cols=114 Identities=24% Similarity=0.319 Sum_probs=81.7
Q ss_pred eecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCE
Q 000717 696 GKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDI 775 (1334)
Q Consensus 696 GkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDV 775 (1334)
|.||||||||+|+|.|.. ..+++.+++|.+.......+++.++.++||||..+..... ..+.+. +.++....+|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s-~~e~v~---~~~l~~~~aDv 75 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFS-LEEEVA---RDYLLNEKPDL 75 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccc-hHHHHH---HHHHhhcCCCE
Confidence 899999999999999985 4677888888888777778889999999999987643211 112222 23344446899
Q ss_pred EEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 776 VLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 776 VLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
|++|+|++...+ .......+. +...|+|+|+||+|....
T Consensus 76 vI~VvDat~ler---~l~l~~ql~-----~~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 76 VVNVVDASNLER---NLYLTLQLL-----ELGIPMILALNLVDEAEK 114 (591)
T ss_pred EEEEecCCcchh---hHHHHHHHH-----hcCCCEEEEEehhHHHHh
Confidence 999999876432 333333333 235899999999998643
No 152
>PRK00007 elongation factor G; Reviewed
Probab=98.83 E-value=2.8e-08 Score=122.96 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=83.8
Q ss_pred ccEEEEEeecCCChhhhhhhhc---CCCcc--eec------------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIF---GEEKT--SIH------------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLL---Gee~a--~Vs------------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
-.+|+|+|++|+|||||+|+|+ |.... .+. ...+.|.+.....+.|.++++.||||||+.+.
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f- 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF- 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH-
Confidence 4689999999999999999997 43211 111 12356667777778889999999999997431
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..++.+++.. .|++|+|+++...... ++..+++.+.+ ...+.|+++||||...
T Consensus 89 ---------~~ev~~al~~--~D~~vlVvda~~g~~~-qt~~~~~~~~~-----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 89 ---------TIEVERSLRV--LDGAVAVFDAVGGVEP-QSETVWRQADK-----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred ---------HHHHHHHHHH--cCEEEEEEECCCCcch-hhHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 1234455553 4999999998876543 67777777653 4478899999999875
No 153
>PRK12739 elongation factor G; Reviewed
Probab=98.83 E-value=1.9e-08 Score=124.37 Aligned_cols=115 Identities=19% Similarity=0.152 Sum_probs=83.5
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcc-----eecc------------CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKT-----SIHA------------FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a-----~Vss------------~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
-.+|+|+|++++|||||+|+|+..... .+.. ..+.|.+.....+.++++++.||||||+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~-- 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD-- 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH--
Confidence 468999999999999999999743111 1111 235666777778889999999999999743
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...++.+++.. .|++|+|+++...... ++..+++.+.+ ...+.|+++||+|...
T Consensus 86 --------f~~e~~~al~~--~D~~ilVvDa~~g~~~-qt~~i~~~~~~-----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 --------FTIEVERSLRV--LDGAVAVFDAVSGVEP-QSETVWRQADK-----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred --------HHHHHHHHHHH--hCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECCCCCC
Confidence 12235555664 4999999998876533 56777776652 3478899999999874
No 154
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.82 E-value=4.1e-08 Score=107.01 Aligned_cols=113 Identities=18% Similarity=0.115 Sum_probs=75.1
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceec-----------c------CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIH-----------A------FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vs-----------s------~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
+|+++|.+|+|||||+|+|+........ + ..+.|.........+.+.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 5899999999999999999864322110 0 01223334455667889999999999986431
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+..++. ..|++++|+++...... +...+++.+.+ ...|.|+++||+|...
T Consensus 79 --------~~~~~~l~--~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 79 --------AEVERSLS--VLDGAILVISAVEGVQA-QTRILWRLLRK-----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred --------HHHHHHHH--HhCeEEEEEeCCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECccccC
Confidence 12334444 35999999998865432 33445554432 3478999999999754
No 155
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.82 E-value=2.2e-08 Score=98.35 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=69.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+++|.+|+|||||+|+|+..... ....+++.........+++ ..+.++||||..... .....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------~~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA----------AIRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------HHHHHH
Confidence 48999999999999999999975432 2233333332223334444 468899999964321 111223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++ ..+++++|.++.....-..-...+..+..... ....|+++|+||+|+..
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 69 HR--SGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 44 35888888887653310001122223332211 24579999999999865
No 156
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.82 E-value=4.5e-08 Score=98.06 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=69.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+++|.+|||||||+|++++..... ...+..+.........+++. .+.|+||||.... .....
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~ 72 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDT-QLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF----------RSLRT 72 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCc-CcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH----------HHhHH
Confidence 35899999999999999999998753221 11111122222233445554 5678999994211 11122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~L 820 (1334)
.++. ..|++++|.+++....-..-...+..+...... ....|+|+|.||+|+.
T Consensus 73 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 73 PFYR--GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHhc--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 2333 469999998887653210111223333332221 1346899999999975
No 157
>PRK12736 elongation factor Tu; Reviewed
Probab=98.82 E-value=4.3e-08 Score=113.86 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=79.9
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCC------cceec---------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEE------KTSIH---------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee------~a~Vs---------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|..++|||||+++|++.. .+... ...+.|.++....+..+++++.||||||..
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 457999999999999999999998731 11100 123566666666666678899999999953
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce-EEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS-AIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~-tIIVLTK~D~Le 821 (1334)
+.+..+...+. .+|++|+|+++...... ++...+..+.. + ..+ .||++||+|+..
T Consensus 87 -------~f~~~~~~~~~--~~d~~llVvd~~~g~~~-~t~~~~~~~~~-~----g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 87 -------DYVKNMITGAA--QMDGAILVVAATDGPMP-QTREHILLARQ-V----GVPYLVVFLNKVDLVD 142 (394)
T ss_pred -------HHHHHHHHHHh--hCCEEEEEEECCCCCch-hHHHHHHHHHH-c----CCCEEEEEEEecCCcc
Confidence 12223333333 46999999998865432 46666766542 2 345 678999999863
No 158
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.81 E-value=4.5e-08 Score=97.51 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=70.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
-++|+++|.+|||||||++.+++..... ...+..+.+.......+.+. .+.++||||.... ......
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~ 75 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF----------RSITQS 75 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH----------HHHHHH
Confidence 4899999999999999999998653211 11111122333444556664 5778999995321 111233
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++. ..|++++|.+++....-..-...+..+..... ...+.|+|.||+|+..+
T Consensus 76 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~ 127 (169)
T cd04114 76 YYR--SANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAER 127 (169)
T ss_pred Hhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECcccccc
Confidence 455 35999999998754221001122332332221 23678999999997643
No 159
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.81 E-value=5e-08 Score=98.54 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=69.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+++|.+|||||||+|++++..... ...+..+.+.......+.+ ..+.|+||||..+. ... ....
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~---~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERF------RKS---MVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHH------HHh---hHHH
Confidence 3789999999999999999998754211 1111111122233344455 57889999995321 001 1222
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHh--cccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNAL--GTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiF--G~ea~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|.+++....- ..+..++..+. ......|+|+|.||+|+..
T Consensus 72 ~~~--~~d~~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 72 YYR--NVHAVVFVYDVTNMASF---HSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred hhc--CCCEEEEEEECCCHHHH---HhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 333 46999999999865431 12222332222 2223479999999999754
No 160
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.81 E-value=1.8e-08 Score=93.72 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=68.3
Q ss_pred EEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe--CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC
Q 000717 694 VLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV--DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 694 LVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev--dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc 771 (1334)
|+|.+|+|||||+|+|++...... ...++........... .+..+.++||||...... ....++.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~~-- 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPE-EYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS----------LRRLYYR-- 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCc-ccccchhheeeEEEEECCEEEEEEEEecCChHHHHh----------HHHHHhc--
Confidence 589999999999999998765211 1111112222222222 256899999999754311 1122333
Q ss_pred CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 772 APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 772 gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..|++++|+++...... .+...+..+..........++++|+||.|....
T Consensus 68 ~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 68 GADGIILVYDVTDRESF-ENVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 46999999998875432 122211011212233456899999999998754
No 161
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.80 E-value=2.3e-08 Score=103.46 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=70.2
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
+|+|+|.+|||||||+|+++..... ....+++.........+++. .+.|+||||..... . ....++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~---~~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------A---LRDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------H---HHHHHH
Confidence 5899999999999999999865321 12333333222233445555 47889999953211 1 111234
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
. ..|++|+|.+++....-..-...+..+...... ....|+|+|.||+|+..
T Consensus 69 ~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 69 R--EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred H--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 4 469999999987643211112334444433321 13468999999999864
No 162
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.80 E-value=4.5e-08 Score=98.09 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=70.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+++|.+|||||||+|++++..- . ...++++. +........++. ++.|+||||.... ......
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~~ 70 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-M-ADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF----------RAVTRS 70 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHH----------HHHHHH
Confidence 7899999999999999999987632 1 12222221 222223344443 6789999995311 111223
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Lep 822 (1334)
+++ .+|++|+|.+++.... -..+..++...... ....++++|.||+|+...
T Consensus 71 ~~~--~~~~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 71 YYR--GAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred Hhc--CCCEEEEEEECCCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 444 4699999999886542 12233444333211 233689999999998543
No 163
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.80 E-value=2.4e-08 Score=99.17 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=70.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+|+|.+|||||||+++++...... ...+++..........++. .+.|+||||..... .+. ..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMR---DLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCchhheEEEEEEECCEEEEEEEEECCCccccc-------chH---HHH
Confidence 689999999999999999998764322 1223322233334444554 46789999964321 011 112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-...+..+.+... ....|++||.||+|+..
T Consensus 70 ~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 70 IK--NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 33 35999999998765421011223334443322 24579999999999754
No 164
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.80 E-value=3.8e-08 Score=121.70 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=82.4
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcce-----ecc------------CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTS-----IHA------------FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~-----Vss------------~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
-.+|+|+|++|+|||||+|+|+...... +.+ ..+.|.......+.+++.++.||||||+.+..
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3589999999999999999997532211 111 23556667778888999999999999996531
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+..++.. .|++|+|+++...... ++..+++.+. ....+.|+++||+|...
T Consensus 90 ----------~~~~~~l~~--~D~~ilVvda~~g~~~-~~~~~~~~~~-----~~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 90 ----------VEVERSLRV--LDGAVAVLDAVGGVQP-QSETVWRQAN-----RYEVPRIAFVNKMDKTG 141 (689)
T ss_pred ----------HHHHHHHHH--hCEEEEEEeCCCCCCh-hHHHHHHHHH-----HcCCCEEEEEECCCCCC
Confidence 123344543 4999999998875433 4566666554 23478999999999864
No 165
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.80 E-value=6.5e-08 Score=112.21 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=78.9
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCC------Ccceec---------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGE------EKTSIH---------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGe------e~a~Vs---------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|..++|||||+++|++. ..+... ...+.|.++....+..+++++.||||||..+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~-- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH--
Confidence 45799999999999999999999842 222110 1146677776666666788999999999642
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce-EEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS-AIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~-tIIVLTK~D~Le 821 (1334)
.+..+...+. .+|++++|+++...... ++...+..+.. + ..+ +|+++||+|+..
T Consensus 88 --------f~~~~~~~~~--~~D~~ilVvda~~g~~~-qt~e~l~~~~~-~----gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 88 --------YVKNMITGAA--QMDGAILVVSATDGPMP-QTREHILLARQ-V----GVPYIVVFLNKCDMVD 142 (394)
T ss_pred --------HHHHHHHHHh--hCCEEEEEEECCCCCcH-HHHHHHHHHHH-c----CCCEEEEEEEecccCC
Confidence 1122223333 46999999999875432 45566665542 2 244 557899999864
No 166
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.79 E-value=2.8e-08 Score=102.05 Aligned_cols=116 Identities=15% Similarity=0.125 Sum_probs=69.0
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|||||||+|++++..... ...+..+.+.......+++. .+.++||||..... .....+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~----------~~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR----------SLNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------hhHHHH
Confidence 589999999999999999999764321 11111122232333444443 56889999953210 111233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++|+|.+++.... -..+..++..+... ....++|+|.||+|+..
T Consensus 70 ~~--~~d~iilv~d~~~~~s---~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 70 YR--GAHGYLLVYDVTDQES---FENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred cc--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 34 4699999999876432 11223333322211 12368999999999764
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.79 E-value=2.8e-08 Score=101.18 Aligned_cols=102 Identities=20% Similarity=0.303 Sum_probs=64.2
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
+|+++|++|+|||||+|.|.|..... ..|..+ .+.+. .+|||||..... ....+.+...+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~~v-----~~~~~--~~iDtpG~~~~~------~~~~~~~~~~~~- 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQAV-----EFNDK--GDIDTPGEYFSH------PRWYHALITTLQ- 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccceEE-----EECCC--CcccCCccccCC------HHHHHHHHHHHh-
Confidence 79999999999999999999874211 122211 22222 279999986442 122333333344
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.+|++|+|++++..... .... +.+. + ..+++++++||+|+.
T Consensus 64 -~ad~il~v~d~~~~~s~-~~~~----~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 64 -DVDMLIYVHGANDPESR-LPAG----LLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred -cCCEEEEEEeCCCcccc-cCHH----HHhc-c--CCCCeEEEEEccccC
Confidence 56999999998865432 2222 2221 1 246899999999973
No 168
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.79 E-value=4.4e-08 Score=104.08 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=68.7
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
.++|+|+|.+|||||||+|.+++........ +..+.+.......+ .+ ..+.|+||||.... .....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~-~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 70 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD-PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF----------RSITR 70 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC-ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH----------HHHHH
Confidence 3789999999999999999999865322211 11112222222333 23 46889999995321 11122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.++. ..|++|+|.+++....-..-...++.+.+... ....+.|||.||+|+..
T Consensus 71 ~~~~--~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 71 SYYR--NSVGVLLVFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLES 123 (211)
T ss_pred HHhc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccc
Confidence 3444 35999999998764321001122333332222 12346788999999764
No 169
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.79 E-value=3.8e-08 Score=120.48 Aligned_cols=118 Identities=16% Similarity=0.110 Sum_probs=79.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceecc----------CC----------------------CceeeEEEEEEEe
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHA----------FE----------------------PGTTSVKEIVGTV 734 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss----------~~----------------------gtTt~~~~~~~ev 734 (1334)
...++|+++|.+++|||||+|.|+......+.. .. +.|.+.....+.+
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 456899999999999999999999765443311 11 2344444456667
Q ss_pred CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 735 DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 735 dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
++.++.||||||..+ ....+...+. .+|++|+|+++...... ++...+..+. .++ .+++|||+
T Consensus 102 ~~~~~~liDtPG~~~----------f~~~~~~~~~--~aD~~llVvda~~g~~~-~t~e~~~~~~-~~~---~~~iivvv 164 (632)
T PRK05506 102 PKRKFIVADTPGHEQ----------YTRNMVTGAS--TADLAIILVDARKGVLT-QTRRHSFIAS-LLG---IRHVVLAV 164 (632)
T ss_pred CCceEEEEECCChHH----------HHHHHHHHHH--hCCEEEEEEECCCCccc-cCHHHHHHHH-HhC---CCeEEEEE
Confidence 788999999999532 1222223344 46999999998766543 4555554443 233 26889999
Q ss_pred eccCCCC
Q 000717 815 THAASAP 821 (1334)
Q Consensus 815 TK~D~Le 821 (1334)
||+|+..
T Consensus 165 NK~D~~~ 171 (632)
T PRK05506 165 NKMDLVD 171 (632)
T ss_pred Eeccccc
Confidence 9999864
No 170
>PLN03126 Elongation factor Tu; Provisional
Probab=98.78 E-value=8.7e-08 Score=114.40 Aligned_cols=118 Identities=12% Similarity=0.050 Sum_probs=79.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCccee---------------ccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSI---------------HAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~V---------------ss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|+++|.+++|||||+++|++...... ....+.|.++....+.++++++.||||||..+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~-- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD-- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH--
Confidence 4579999999999999999999995321110 11134555665666677889999999999642
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+..+...+. .+|++++|+++...... +....+..+. .+| .++.|+++||+|+..
T Consensus 157 --------f~~~~~~g~~--~aD~ailVVda~~G~~~-qt~e~~~~~~-~~g---i~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 157 --------YVKNMITGAA--QMDGAILVVSGADGPMP-QTKEHILLAK-QVG---VPNMVVFLNKQDQVD 211 (478)
T ss_pred --------HHHHHHHHHh--hCCEEEEEEECCCCCcH-HHHHHHHHHH-HcC---CCeEEEEEecccccC
Confidence 2233334444 46999999998876543 4555565443 223 134788999999864
No 171
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.77 E-value=6.2e-08 Score=99.26 Aligned_cols=113 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.++|+++|.+|||||||++.+...... ...+ |.............++.|+||||.... . .....++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~---~~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~-------~---~~~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV---TTIP-TIGFNVETVTYKNISFTVWDVGGQDKI-------R---PLWRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC---CcCC-ccccceEEEEECCEEEEEEECCCChhh-------H---HHHHHHh
Confidence 589999999999999999999643221 1222 322222334556788999999996321 1 1122334
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
. .+|++|||+|++.... -..+.+++...+... ...|++||.||.|+.
T Consensus 79 ~--~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 T--NTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred C--CCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 4 4699999999876432 112344444444322 236899999999974
No 172
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.77 E-value=7.1e-08 Score=100.87 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=70.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..++|+|+|.+|||||||+|++++..... ...++. .+.......+.+ ..+.|+||||..... ...
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~~~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSG--SYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR----------TIT 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH----------HHH
Confidence 46899999999999999999999864211 111111 122223334444 467899999953210 111
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..++. ..+++++|.+++....- ..+..++..+.......+.|||.||+|+.+
T Consensus 73 ~~~~~--~a~~iilv~D~~~~~s~---~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 73 STYYR--GTHGVIVVYDVTNGESF---VNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHhC--CCcEEEEEEECCCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 22333 46899999998764321 123334433322223468899999999764
No 173
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.77 E-value=5.8e-08 Score=97.83 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
+||+++|.+|||||||++++...... . ..++ .............++.|+||||.... . .....++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~-~~pt-~g~~~~~~~~~~~~~~l~D~~G~~~~-------~---~~~~~~~~ 66 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--T-TIPT-IGFNVETVEYKNISFTVWDVGGQDKI-------R---PLWRHYFQ 66 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--c-cCCC-CCcceEEEEECCEEEEEEECCCCHhH-------H---HHHHHHhc
Confidence 48999999999999999999644322 1 2222 22222234456788999999996321 1 11123344
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
+.|++|||.|++.... -..+.+++.+.+... ...|++||.||.|+.
T Consensus 67 --~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 67 --NTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred --CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 4699999999886432 112233344333221 236899999999974
No 174
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.77 E-value=6.3e-08 Score=100.30 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=72.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+|+|.+|||||||++.+....... ..+ |...........+..+.|+||||.... . .....+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~---~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~-------~---~~~~~~ 81 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT---TIP-TIGFNVETVEYKNLKFTMWDVGGQDKL-------R---PLWRHY 81 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc---cCC-ccccceEEEEECCEEEEEEECCCCHhH-------H---HHHHHH
Confidence 35899999999999999999996442221 222 322222334556788999999996321 1 111233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
+. ++|++|||++++....- ..+.+.+.+.+... ...|+|||.||.|+..
T Consensus 82 ~~--~ad~iI~v~D~t~~~s~---~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 82 YQ--NTNGLIFVVDSNDRERI---GDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred hc--CCCEEEEEEeCCCHHHH---HHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 44 46999999998754321 12233444444322 2368999999999743
No 175
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.76 E-value=3.2e-08 Score=103.23 Aligned_cols=116 Identities=19% Similarity=0.202 Sum_probs=71.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
+|+|+|.+|||||||+|++++.... ....+++.........+.+ ..+.|+||||..... .+ . ..++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~-~--~~~~ 68 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP-------AM-R--KLSI 68 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhh-------HH-H--HHHh
Confidence 5899999999999999999986432 1222333233333445556 468899999965321 11 1 1123
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. ..|++|+|++++....-..-..++..+.+... ....|+|||+||+|...
T Consensus 69 ~--~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 69 Q--NSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred h--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 3 46999999998764321011222333333222 24579999999999865
No 176
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.76 E-value=3.1e-08 Score=100.44 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=67.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee--EEEEEEEeC--CeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVD--GVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~--~~~~~~evd--GrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
++|+++|.+|||||||+|+++...... .. ..|.. ........+ ...+.++||||......- . .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~--~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEK--KY-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGL--------R--D 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CC-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhccc--------c--H
Confidence 489999999999999999998543211 11 12221 222222223 357889999997543110 0 1
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.++. .+|++++|.+++....-..-...++.+.+... ..|+|+|.||+|+.
T Consensus 68 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 GYYI--GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred HHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 1222 46999999998864321001123333433322 57999999999985
No 177
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.76 E-value=4.3e-08 Score=98.68 Aligned_cols=114 Identities=22% Similarity=0.289 Sum_probs=68.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe--CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV--DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev--dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+||+|+|.+|||||||+|++++..... .. +.|.........+ ...++.++||||..... ..+..+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~~~ 67 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NV-PRVLPEITIPADVTPERVPTTIVDTSSRPQDR----------ANLAAE 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cC-CCcccceEeeeeecCCeEEEEEEeCCCchhhh----------HHHhhh
Confidence 489999999999999999998764322 11 1222111122222 34578899999975321 112233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCc--HHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLND--LPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qD--l~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+. ..|++++|.+++....- .. ...++.+.. +. ...|+++|.||+|+.+.
T Consensus 68 ~~--~ad~~ilv~d~~~~~s~-~~~~~~~~~~i~~-~~--~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 68 IR--KANVICLVYSVDRPSTL-ERIRTKWLPLIRR-LG--VKVPIILVGNKSDLRDG 118 (166)
T ss_pred cc--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHH-hC--CCCCEEEEEEchhcccc
Confidence 43 46999999998764321 11 112333332 22 25799999999998653
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.76 E-value=1.1e-07 Score=100.79 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=70.6
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEE--eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT--VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~e--vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
+|+|+|.+|+|||||++.|+......+ .++.+......... ..+..+.||||||..+. ...+..++
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~----------~~~~~~~~ 69 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKL----------RDKLLETL 69 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHH----------HHHHHHHH
Confidence 689999999999999999998643221 11111111111111 23678999999996421 11222333
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc----cCCceEEEEEeccCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT----QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~----ea~K~tIIVLTK~D~Lep 822 (1334)
..+ +++++||+++...... -..+.+++..++-. ....|++||.||+|+...
T Consensus 70 ~~~-~~~vV~VvD~~~~~~~--~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 70 KNS-AKGIVFVVDSATFQKN--LKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred hcc-CCEEEEEEECccchhH--HHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 322 4899999998875321 23344444443321 235799999999998653
No 179
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.76 E-value=5.5e-08 Score=98.48 Aligned_cols=117 Identities=17% Similarity=0.190 Sum_probs=69.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.||+|+|.+|||||||+|++++... . ....+++.........+.+ ..+.|+||||..+.. .+. ..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~--~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-V-ESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS--------ILP--QKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-c-cccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH--------HHH--HHH
Confidence 5899999999999999999997642 1 2222333222222233443 457899999964321 011 122
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.. ..|++++|.+.+....-..-..+++.+.+.++ ....|+|+|.||+|...
T Consensus 70 ~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 70 SI--GIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 23 35889999888764321111223333433322 23568999999999854
No 180
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.74 E-value=7.3e-08 Score=112.47 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=78.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceec--------------------------------cCCCceeeEEEEEEEeCCe
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIH--------------------------------AFEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vs--------------------------------s~~gtTt~~~~~~~evdGr 737 (1334)
+||+++|..++|||||++.|+........ ...+.|.++....+.++++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754322111 0124456666667778889
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEecc
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHA 817 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~ 817 (1334)
++.||||||..+ ....+...+. .+|++|+|+++...... ++...+..+. .++ .+++|+++||+
T Consensus 81 ~~~liDtPGh~~----------f~~~~~~~~~--~aD~allVVda~~G~~~-qt~~~~~~~~-~~~---~~~iivviNK~ 143 (406)
T TIGR02034 81 KFIVADTPGHEQ----------YTRNMATGAS--TADLAVLLVDARKGVLE-QTRRHSYIAS-LLG---IRHVVLAVNKM 143 (406)
T ss_pred EEEEEeCCCHHH----------HHHHHHHHHh--hCCEEEEEEECCCCCcc-ccHHHHHHHH-HcC---CCcEEEEEEec
Confidence 999999999532 2222323344 56999999998876543 4555554443 333 25789999999
Q ss_pred CCCC
Q 000717 818 ASAP 821 (1334)
Q Consensus 818 D~Le 821 (1334)
|...
T Consensus 144 D~~~ 147 (406)
T TIGR02034 144 DLVD 147 (406)
T ss_pred cccc
Confidence 9864
No 181
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.74 E-value=5.4e-08 Score=99.34 Aligned_cols=114 Identities=13% Similarity=0.084 Sum_probs=67.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-C--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-G--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-G--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+|+|.+|||||||+|++++.... ....+++........... + ..+.|+||||..+. ..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~-----------~~~~~ 67 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEY-----------DRLRP 67 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhH-----------HHHHH
Confidence 58999999999999999999986432 112222222111122332 2 36789999995321 11111
Q ss_pred -HHhhCCCCEEEEEecCCCccCCCCcHHHH-HHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 -FTKKCAPDIVLYVDRLDSQTRDLNDLPLL-RSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 -aIkkcgpDVVLLVIDad~~t~e~qDl~lL-e~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++++|.+++....- ..+. .++..........|+|+|.||+|+..
T Consensus 68 ~~~~--~ad~ii~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSYP--DVDVLLICYAVDNPTSL---DNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhCC--CCCEEEEEEECCCHHHH---HHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 223 57999999998864321 1121 23322221123469999999999764
No 182
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.74 E-value=5e-08 Score=98.19 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=70.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|+||||++|++++.... ....+++.........+++ .++.++||||...... + ...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA-------M---RELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCcccchh-------h---hHHH
Confidence 68999999999999999999876422 2222333222222333444 4678999999654310 1 1122
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+. ..+.+++|.+++....-..-......+.+.+. ....|+|++.||.|...+
T Consensus 70 ~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 70 IK--SGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLEDD 121 (168)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhcccc
Confidence 33 35888999888764321012233344443332 335799999999998643
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.74 E-value=1.2e-07 Score=115.42 Aligned_cols=115 Identities=19% Similarity=0.191 Sum_probs=76.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCccee--ccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSI--HAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~V--ss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+.|+++|.+++|||||+|+|+|...... ....+.|.++....+.+.+..+.||||||.. ...+.+...
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe----------~f~~~~~~g 70 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE----------KFISNAIAG 70 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH----------HHHHHHHhh
Confidence 4799999999999999999998542111 1123456666655667778899999999942 122223233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. .+|++++|++++..... +....+..+. .++ ..+.|||+||+|+..
T Consensus 71 ~~--~aD~aILVVDa~~G~~~-qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 71 GG--GIDAALLVVDADEGVMT-QTGEHLAVLD-LLG---IPHTIVVITKADRVN 117 (581)
T ss_pred hc--cCCEEEEEEECCCCCcH-HHHHHHHHHH-HcC---CCeEEEEEECCCCCC
Confidence 33 57999999999875322 3444444433 233 134999999999864
No 184
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.73 E-value=8.9e-08 Score=106.28 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=73.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCccee---------------ccCC------CceeeEEEEEEEeCCeEEEEEeCCCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSI---------------HAFE------PGTTSVKEIVGTVDGVKIRVIDTPGLK 748 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~V---------------ss~~------gtTt~~~~~~~evdGrkVtLIDTPGL~ 748 (1334)
.+|+|+|.+|+|||||+|+|+....... .++. +.|-......+.+.+.++.||||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999985322211 1110 112233445677889999999999975
Q ss_pred CCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 749 SSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 749 ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+.. ..+..++. ..|++++|+++...... +...+++... ....|+|+++||+|...
T Consensus 83 df~----------~~~~~~l~--~aD~~IlVvda~~g~~~-~~~~i~~~~~-----~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFS----------EDTYRTLT--AVDSAVMVIDAAKGVEP-QTRKLFEVCR-----LRGIPIITFINKLDREG 137 (267)
T ss_pred HHH----------HHHHHHHH--HCCEEEEEEECCCCccH-HHHHHHHHHH-----hcCCCEEEEEECCccCC
Confidence 321 22334444 35999999998765322 2334443332 23478999999999643
No 185
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.73 E-value=8.3e-08 Score=100.21 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeC-C--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVD-G--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evd-G--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
++|+|+|.+|||||||+|++++..... ...++. .+.......++ + ..+.|+||||..... ....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~--~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~----------~~~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ--HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG----------GMTR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh----------hhHH
Confidence 589999999999999999999763211 111221 12222233444 3 467899999963211 1112
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc--ccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG--TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG--~ea~K~tIIVLTK~D~Le 821 (1334)
.++. .+|++++|.+++....-..-...+..+...+. .....|+|||.||+|+..
T Consensus 69 ~~~~--~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 69 VYYR--GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHhC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 2333 56999999998764321001112222322211 124468999999999864
No 186
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.73 E-value=1.2e-07 Score=113.08 Aligned_cols=118 Identities=17% Similarity=0.136 Sum_probs=78.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceecc--------------------------------CCCceeeEEEEEEEe
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHA--------------------------------FEPGTTSVKEIVGTV 734 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss--------------------------------~~gtTt~~~~~~~ev 734 (1334)
...++|+++|.+++|||||++.|+......... ..+.|.++....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 457999999999999999999998654322210 013344555556677
Q ss_pred CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 735 DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 735 dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
+++++.||||||..+ ..+.+...+. .+|++|+|+++...... ++...+..+ ..++ .+++||++
T Consensus 105 ~~~~i~~iDTPGh~~----------f~~~~~~~l~--~aD~allVVDa~~G~~~-qt~~~~~l~-~~lg---~~~iIvvv 167 (474)
T PRK05124 105 EKRKFIIADTPGHEQ----------YTRNMATGAS--TCDLAILLIDARKGVLD-QTRRHSFIA-TLLG---IKHLVVAV 167 (474)
T ss_pred CCcEEEEEECCCcHH----------HHHHHHHHHh--hCCEEEEEEECCCCccc-cchHHHHHH-HHhC---CCceEEEE
Confidence 888999999999421 2222323333 57999999998876433 344444333 2334 25889999
Q ss_pred eccCCCC
Q 000717 815 THAASAP 821 (1334)
Q Consensus 815 TK~D~Le 821 (1334)
||+|+..
T Consensus 168 NKiD~~~ 174 (474)
T PRK05124 168 NKMDLVD 174 (474)
T ss_pred Eeecccc
Confidence 9999864
No 187
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=3.8e-08 Score=113.88 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=66.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCc
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-----------------VKIRVIDTPGLKSSGV 752 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-----------------rkVtLIDTPGL~ds~i 752 (1334)
++|.|+|.||||||||+|+|++.. ..+++++++|.........+.+ .++.|+|||||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 789999999999999999999987 6788888888877665555443 2589999999986432
Q ss_pred chhhHHHHHHHHHHHHhhCCCCEEEEEecCC
Q 000717 753 EQGVNRKVLASIKKFTKKCAPDIVLYVDRLD 783 (1334)
Q Consensus 753 ~d~~~ekIlreIkkaIkkcgpDVVLLVIDad 783 (1334)
. .+.+-..+...+.. +|++|+|+|+.
T Consensus 82 ~---g~glg~~fL~~i~~--aD~li~VVd~f 107 (364)
T PRK09601 82 K---GEGLGNQFLANIRE--VDAIVHVVRCF 107 (364)
T ss_pred h---HHHHHHHHHHHHHh--CCEEEEEEeCC
Confidence 1 12233444455554 49999999975
No 188
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.73 E-value=1.6e-07 Score=99.22 Aligned_cols=116 Identities=16% Similarity=0.173 Sum_probs=68.5
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcce-ec-cCCCceeeEEEEEEEe---------------------------CC----
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTS-IH-AFEPGTTSVKEIVGTV---------------------------DG---- 736 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~-Vs-s~~gtTt~~~~~~~ev---------------------------dG---- 736 (1334)
++|+++|..|+|||||+.+|.+..... .. ...+.|..+......+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997652100 00 0011111111111111 03
Q ss_pred --eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 737 --VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 737 --rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
+++.||||||.. .+...+...+. .+|++|+|++++......+....+..+.. .+ .+++|||+
T Consensus 81 ~~~~i~~iDtPG~~----------~~~~~~~~~~~--~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivv 144 (203)
T cd01888 81 LVRHVSFVDCPGHE----------ILMATMLSGAA--VMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQ 144 (203)
T ss_pred cccEEEEEECCChH----------HHHHHHHHhhh--cCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEE
Confidence 789999999941 23334444444 46999999999864222234445544432 22 25789999
Q ss_pred eccCCCC
Q 000717 815 THAASAP 821 (1334)
Q Consensus 815 TK~D~Le 821 (1334)
||+|+..
T Consensus 145 NK~Dl~~ 151 (203)
T cd01888 145 NKIDLVK 151 (203)
T ss_pred EchhccC
Confidence 9999864
No 189
>PTZ00258 GTP-binding protein; Provisional
Probab=98.72 E-value=3.7e-08 Score=114.87 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=67.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-----------------eEEEEEeCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-----------------VKIRVIDTPGLKS 749 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-----------------rkVtLIDTPGL~d 749 (1334)
...++|.|+|+||||||||+|+|.+.. ..+++++++|.........+.+ .++.|||||||..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 467899999999999999999998875 5778888888877766655542 2589999999986
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLD 783 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad 783 (1334)
.... .+.+-..+...+.. +|++|+|+|..
T Consensus 98 ga~~---g~gLg~~fL~~Ir~--aD~il~VVd~f 126 (390)
T PTZ00258 98 GASE---GEGLGNAFLSHIRA--VDGIYHVVRAF 126 (390)
T ss_pred CCcc---hhHHHHHHHHHHHH--CCEEEEEEeCC
Confidence 4321 12233344455664 49999999975
No 190
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.72 E-value=8.7e-08 Score=103.78 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=73.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCc------cee--cc-----CCCcee------------------------eEEEEEEE
Q 000717 691 NILVLGKTGVGKSATINSIFGEEK------TSI--HA-----FEPGTT------------------------SVKEIVGT 733 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~------a~V--ss-----~~gtTt------------------------~~~~~~~e 733 (1334)
||+++|..++|||||++.|..... ... .. ..+.|. ........
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999974211 000 00 001111 00012234
Q ss_pred eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEE
Q 000717 734 VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVT 813 (1334)
Q Consensus 734 vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIV 813 (1334)
..++.++||||||..+ ..+.+.+.+....+|++++|++++..... ++..++.++.. ...|.|+|
T Consensus 81 ~~~~~i~liDtpG~~~----------~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~~l~~l~~-----~~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHER----------YLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKEHLGLALA-----LNIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHH----------HHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHHHHHHHHH-----cCCCEEEE
Confidence 5578899999999642 22233344433357999999998865543 57777877763 34789999
Q ss_pred EeccCCCC
Q 000717 814 LTHAASAP 821 (1334)
Q Consensus 814 LTK~D~Le 821 (1334)
+||+|.+.
T Consensus 145 vNK~D~~~ 152 (224)
T cd04165 145 VTKIDLAP 152 (224)
T ss_pred EECccccC
Confidence 99999864
No 191
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.71 E-value=1.8e-07 Score=95.66 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+|+++|.+|||||||+|++++.. +. ....++.. ........+++ .++.|+||||.... .. ....+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~---~~~~~ 69 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FD-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERF-------KC---IASTY 69 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHH-------Hh---hHHHH
Confidence 79999999999999999999863 21 12222222 22223344444 46899999996321 00 11122
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
+. +.|++++|.+++.... -..+.+++.+++... ...++|+|.||+|+.+
T Consensus 70 ~~--~ad~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~ 120 (170)
T cd04108 70 YR--GAQAIIIVFDLTDVAS---LEHTRQWLEDALKENDPSSVLLFLVGTKKDLSS 120 (170)
T ss_pred hc--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCc
Confidence 33 5799999999875321 112333444333221 1246899999999754
No 192
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.70 E-value=1.2e-07 Score=96.21 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=70.4
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc 771 (1334)
|+++|.+|||||||++++++... . ....++ ...........+.++.++||||-.... .+ ...++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~-~~~~pt-~g~~~~~i~~~~~~l~i~Dt~G~~~~~-------~~---~~~~~~-- 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L-ESVVPT-TGFNSVAIPTQDAIMELLEIGGSQNLR-------KY---WKRYLS-- 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c-cccccc-CCcceEEEeeCCeEEEEEECCCCcchh-------HH---HHHHHh--
Confidence 79999999999999999997632 1 111122 112223344567889999999964321 11 113344
Q ss_pred CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 772 APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 772 gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..|+++||+|.+.... -..+..++.+.+......|+++|.||.|+..
T Consensus 67 ~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 67 GSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred hCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 4599999999876432 1122333444433334679999999999743
No 193
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.70 E-value=2.8e-07 Score=95.60 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=72.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..++|+++|.+|||||||++.+....... .. .|...........+..+.|+||||-.. .......+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~~-pt~g~~~~~~~~~~~~~~i~D~~Gq~~----------~~~~~~~~ 81 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---TI-PTIGFNVETVEYKNISFTVWDVGGQDK----------IRPLWRHY 81 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---cc-CCcceeEEEEEECCEEEEEEECCCCHH----------HHHHHHHH
Confidence 35899999999999999999998543221 11 222233334556778999999999421 11112233
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
+. .+|+++||+|++.... -..+.+++...+... ...|.+||.||.|+.
T Consensus 82 ~~--~a~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 82 FQ--NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred hc--cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 44 4699999999876432 112334444443321 246899999999974
No 194
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.70 E-value=3.7e-08 Score=110.19 Aligned_cols=86 Identities=19% Similarity=0.170 Sum_probs=63.5
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe-----------------EEEEEeCCCCCCCCcch
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV-----------------KIRVIDTPGLKSSGVEQ 754 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr-----------------kVtLIDTPGL~ds~i~d 754 (1334)
|.|+|.||||||||+|+|++... .+++++++|.........+.+. ++.|+||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~- 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK- 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch-
Confidence 57999999999999999999876 7788888887776655555442 4899999999865321
Q ss_pred hhHHHHHHHHHHHHhhCCCCEEEEEecCC
Q 000717 755 GVNRKVLASIKKFTKKCAPDIVLYVDRLD 783 (1334)
Q Consensus 755 ~~~ekIlreIkkaIkkcgpDVVLLVIDad 783 (1334)
.+.+...+...++. +|++++|+|..
T Consensus 79 --~~glg~~fL~~i~~--~D~li~VV~~f 103 (274)
T cd01900 79 --GEGLGNKFLSHIRE--VDAIAHVVRCF 103 (274)
T ss_pred --hhHHHHHHHHHHHh--CCEEEEEEeCc
Confidence 12233344445553 59999999864
No 195
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.69 E-value=3e-08 Score=112.11 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=90.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe-EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV-KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr-kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.-..|-+||-||+|||||+|+|...+. .+..++.||-........+++. +++|-|.|||..-... ++-+-..+.+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~---nkGlG~~FLr 270 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHM---NKGLGYKFLR 270 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccc---cCcccHHHHH
Confidence 345678999999999999999998754 7888888888877777666655 4999999999865321 2223334567
Q ss_pred HHhhCCCCEEEEEecCCCc---cCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQ---TRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASA 820 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~---t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~L 820 (1334)
.|+.| ..++||+|+..+ +.- ++..+|..-.+.+... ..++.+||.||.|..
T Consensus 271 HiER~--~~l~fVvD~s~~~~~~p~-~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 271 HIERC--KGLLFVVDLSGKQLRNPW-QQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HHHhh--ceEEEEEECCCcccCCHH-HHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 77766 899999999877 322 3444444433445443 447899999999975
No 196
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.69 E-value=7.7e-08 Score=103.07 Aligned_cols=118 Identities=19% Similarity=0.148 Sum_probs=68.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeC--CeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVD--GVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evd--GrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
++|+|+|.+|||||||+|.+++.... .....++. .+.......++ ...+.|+||||... .+.. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---------~~~~---~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---------WTED---S 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---------HHHh---H
Confidence 48999999999999999999765332 11111111 12222233333 45789999999751 1111 1
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++. ..+|++++|.+++....-..-..++..+.+. ......|+|+|.||+|+...
T Consensus 68 ~~~-~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 68 CMQ-YQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred Hhh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccc
Confidence 222 1469999999988654210112233333322 12245799999999997643
No 197
>PLN03110 Rab GTPase; Provisional
Probab=98.69 E-value=1.5e-07 Score=100.30 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=71.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+++|.+|||||||+++|++..... ...+....+.......+++ .++.|+||||... ......
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~~~ 79 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAITS 79 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHH
Confidence 45899999999999999999999865322 1111112233333444555 4788999999431 111222
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.++. ..+++|+|.+++....-..-...+..+.... ....++|+|.||+|+..
T Consensus 80 ~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 80 AYYR--GAVGALLVYDITKRQTFDNVQRWLRELRDHA--DSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHhC--CCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCeEEEEEEChhccc
Confidence 3444 4699999999875432100112233333222 13468999999999754
No 198
>PTZ00369 Ras-like protein; Provisional
Probab=98.68 E-value=8.9e-08 Score=99.07 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=69.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+|+|.+|||||||++++++..... ...+++.........+++. .+.++||||..+.. .+ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l---~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFID--EYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-------AM---RDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCc--CcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch-------hh---HHH
Confidence 5899999999999999999999764321 1222222222223344443 57789999975431 11 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
++. ..|++++|.+++....-..-...++.+.+... ....|+|||.||+|+.
T Consensus 73 ~~~--~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 73 YMR--TGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 333 46999999998765421111223333332221 2346899999999964
No 199
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.68 E-value=1.4e-07 Score=100.91 Aligned_cols=115 Identities=16% Similarity=0.171 Sum_probs=75.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcce------------------------ec------cCCCceeeEEEEEEEeCCeEEE
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTS------------------------IH------AFEPGTTSVKEIVGTVDGVKIR 740 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~------------------------Vs------s~~gtTt~~~~~~~evdGrkVt 740 (1334)
+|+++|.+++|||||+.+|+...... +. ...+.|.+.....+.+.++++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321100 00 1235677777788888999999
Q ss_pred EEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCcc------CCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 741 VIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQT------RDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 741 LIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t------~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
||||||..+. ...+..++. .+|++|+|+++.... ...+....+.... .++ .+++|||+
T Consensus 81 liDtpG~~~~----------~~~~~~~~~--~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~iiivv 144 (219)
T cd01883 81 ILDAPGHRDF----------VPNMITGAS--QADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLG---VKQLIVAV 144 (219)
T ss_pred EEECCChHHH----------HHHHHHHhh--hCCEEEEEEECCCCccccccccccchHHHHHHHH-HcC---CCeEEEEE
Confidence 9999996421 122223333 469999999988631 1223333333332 222 26899999
Q ss_pred eccCCCC
Q 000717 815 THAASAP 821 (1334)
Q Consensus 815 TK~D~Le 821 (1334)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999874
No 200
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.67 E-value=2.1e-07 Score=100.47 Aligned_cols=109 Identities=20% Similarity=0.204 Sum_probs=70.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCc-ceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEK-TSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~-a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..+..|+|+|.+|+|||||+|+|++... ..+....++ + . .....++++.++||||.. ..+ .
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~---i-~-i~~~~~~~i~~vDtPg~~---------~~~----l 98 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP---I-T-VVTGKKRRLTFIECPNDI---------NAM----I 98 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc---E-E-EEecCCceEEEEeCCchH---------HHH----H
Confidence 4568899999999999999999997622 122222121 1 1 122357889999999732 122 2
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceE-EEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSA-IVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~t-IIVLTK~D~Le 821 (1334)
..++ ..|++++|+++...... ++..++..+.. ...+. |+|+||+|.+.
T Consensus 99 ~~ak--~aDvVllviDa~~~~~~-~~~~i~~~l~~-----~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 99 DIAK--VADLVLLLIDASFGFEM-ETFEFLNILQV-----HGFPRVMGVLTHLDLFK 147 (225)
T ss_pred HHHH--hcCEEEEEEecCcCCCH-HHHHHHHHHHH-----cCCCeEEEEEeccccCC
Confidence 2333 35999999998765433 46666666652 23564 45999999874
No 201
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.67 E-value=6.7e-08 Score=96.96 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=67.7
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
|+|+|.+|||||||+|++++..... ...+++.........+++. .+.|+||||...... +. ..++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~--~~~~~ 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPE--DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR--------LR--PLSYP 68 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCC--CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccch--------hc--hhhcC
Confidence 5899999999999999999864321 1222222222223344554 578999999643210 00 11222
Q ss_pred hCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..|++|+|.+++....- ... ..+..+.+ .....|+|+|.||+|+..
T Consensus 69 --~~d~~ilv~d~~~~~s~-~~~~~~~~~~i~~---~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 69 --DTDVFLICFSVDSPASF-ENVKEKWYPEVKH---FCPNTPIILVGTKLDLRE 116 (174)
T ss_pred --CCCEEEEEEECCCHHHH-HHHHHHHHHHHHh---hCCCCCEEEEecChhhhh
Confidence 56999999998764321 111 12333332 223579999999999865
No 202
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.67 E-value=1.5e-07 Score=94.38 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=68.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|+|||||+|++++.... ....+++.........+++. .+.++||||-..... ++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------LRP- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------ccc-
Confidence 58999999999999999999876432 11223332222233445554 467899999654211 111
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
......|++|+|.+++....- ++. ..+..+.. .....|+|+|.||+|+..
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~-~~~~~~~~~~l~~---~~~~~piivv~nK~Dl~~ 118 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASF-QNVKEEWVPELKE---YAPNVPYLLVGTQIDLRD 118 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHHh---hCCCCCEEEEeEchhhhc
Confidence 111246999999988754321 111 12333332 134579999999999753
No 203
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.66 E-value=2.2e-07 Score=94.68 Aligned_cols=117 Identities=15% Similarity=0.039 Sum_probs=72.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee-eEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT-SVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt-~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..++|+|+|.+|||||||+|++++.... +....+++. ........++| ..+.++||+|-...... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~----------~ 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILL----------N 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCccccccc----------c
Confidence 4589999999999999999999986532 123334332 22223344555 45778899986433110 0
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..++. ..|++|+|.+++.... ...+.+++.. +......|+|+|.||+|+.+
T Consensus 72 ~~~~~--~~d~~llv~d~~~~~s---~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 72 DAELA--ACDVACLVYDSSDPKS---FSYCAEVYKK-YFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred hhhhh--cCCEEEEEEeCCCHHH---HHHHHHHHHH-hccCCCCeEEEEEEcccccc
Confidence 11233 4699999999876432 1223333432 22223579999999999754
No 204
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.65 E-value=3.1e-07 Score=92.44 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=70.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|+|||||++.+++..... ...+....+.........+ ..+.|+||||..... .....+
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----------~~~~~~ 69 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ----------TITKQY 69 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH----------hhHHHH
Confidence 479999999999999999998764321 1111111223333445555 357889999953211 112223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Lep 822 (1334)
+. .+|++++|.+++....- ..+.+++..+.... ...++++|.||.|+...
T Consensus 70 ~~--~~~~~i~v~d~~~~~sf---~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 70 YR--RAQGIFLVYDISSERSY---QHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred hc--CCcEEEEEEECCCHHHH---HHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 33 46999999998865321 12333343332221 24689999999997543
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.65 E-value=2.5e-07 Score=100.44 Aligned_cols=112 Identities=15% Similarity=0.129 Sum_probs=71.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccC---------------CCceeeEEEEEEEeC----------CeEEEEEeCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAF---------------EPGTTSVKEIVGTVD----------GVKIRVIDTP 745 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~---------------~gtTt~~~~~~~evd----------GrkVtLIDTP 745 (1334)
+|+++|..+.|||||+++|+.......... .+.|.........+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999986432211110 122222222222222 5678999999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 746 GLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 746 GL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
|..+.. ..+..++. .+|++|+|+++...... +...+++.... ...+.|+|+||+|+.
T Consensus 82 G~~~f~----------~~~~~~l~--~aD~~ilVvD~~~g~~~-~t~~~l~~~~~-----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS----------SEVTAALR--LCDGALVVVDAVEGVCV-QTETVLRQALK-----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccH----------HHHHHHHH--hcCeeEEEEECCCCCCH-HHHHHHHHHHH-----cCCCEEEEEECCCcc
Confidence 986531 22334444 35999999998876532 34455554432 236899999999986
No 206
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.64 E-value=1.5e-07 Score=117.99 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=80.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..+..|+|+|.+++|||||+++|.+.... .+..++.|.....+.+.+.+++|+||||||..+.. .+ ..+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------~m---~~r 356 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT-------AM---RAR 356 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch-------hH---HHh
Confidence 46789999999999999999999875432 23344556666666777888999999999975431 01 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
... ..|++|+|++++..... +....++.+. ....|+||++||+|+.
T Consensus 357 ga~--~aDiaILVVdAddGv~~-qT~e~i~~a~-----~~~vPiIVviNKiDl~ 402 (787)
T PRK05306 357 GAQ--VTDIVVLVVAADDGVMP-QTIEAINHAK-----AAGVPIIVAINKIDKP 402 (787)
T ss_pred hhh--hCCEEEEEEECCCCCCH-hHHHHHHHHH-----hcCCcEEEEEECcccc
Confidence 233 35999999998865432 3444454333 2447899999999984
No 207
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.64 E-value=2.4e-07 Score=94.85 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=71.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+|+|.+|||||||++.+++..... ...+++.........+++. .+.|+||||..... .+ ...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l---~~~ 69 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT-------AM---RDQ 69 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH-------HH---hHH
Confidence 4789999999999999999998754221 1223332223334455664 57889999964321 11 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++++|.+++....-..-....+.+.... .....|+|+|.||+|+..
T Consensus 70 ~~~--~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 70 YMR--CGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLES 121 (172)
T ss_pred Hhh--cCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhhh
Confidence 333 4699999999886543101112223333321 223579999999999753
No 208
>PRK09866 hypothetical protein; Provisional
Probab=98.64 E-value=1.3e-06 Score=106.79 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=49.5
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
.++.||||||+...... ...+.+. +.+. .+|+||||+++...... .|..+++.+.+. +. ..|+|+|+||
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L~k~M~----eqL~--eADvVLFVVDat~~~s~-~DeeIlk~Lkk~-~K--~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HLQKMLN----QQLA--RASAVLAVLDYTQLKSI-SDEEVREAILAV-GQ--SVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCccch-HHHHHHH----HHHh--hCCEEEEEEeCCCCCCh-hHHHHHHHHHhc-CC--CCCEEEEEEc
Confidence 46789999999865321 1222333 3455 45999999999864332 477788777642 21 1389999999
Q ss_pred cCCCC
Q 000717 817 AASAP 821 (1334)
Q Consensus 817 ~D~Le 821 (1334)
+|...
T Consensus 299 IDl~d 303 (741)
T PRK09866 299 FDQQD 303 (741)
T ss_pred ccCCC
Confidence 99864
No 209
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.63 E-value=1.8e-07 Score=100.20 Aligned_cols=115 Identities=9% Similarity=0.066 Sum_probs=69.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcc-eeccCCCceeeEEEEEEEeC--CeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKT-SIHAFEPGTTSVKEIVGTVD--GVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a-~Vss~~gtTt~~~~~~~evd--GrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..++|+|+|.+|||||||+++++..... ...+..+. .........+ ..++.|+||||..... .+
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~ 78 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV--EVHPLDFFTNCGKIRFYCWDTAGQEKFG-----------GL 78 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccce--eEEEEEEEECCeEEEEEEEECCCchhhh-----------hh
Confidence 5689999999999999999998754321 11111111 2222222232 3578999999964321 11
Q ss_pred H-HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 765 K-KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 765 k-kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+ .+.. ..|++|+|.+++....- ..+..|+..+.......++|+|.||+|+.
T Consensus 79 ~~~~~~--~~~~~ilvfD~~~~~s~---~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 79 RDGYYI--HGQCAIIMFDVTARLTY---KNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred hHHHcc--cccEEEEEEeCCCHHHH---HHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 1 2223 46899999998865421 22333433333222347999999999974
No 210
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.62 E-value=2.7e-07 Score=101.27 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=71.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH-
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK- 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk- 766 (1334)
++|+|+|.+|||||||+|.+++.... ....+++.+.......+++ ..+.|+||+|..+.. .++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~-----------~~~~~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP-----------AMRRL 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhh-----------HHHHH
Confidence 47999999999999999999865322 1223333333333445556 467899999964321 1111
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc-------ccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG-------TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG-------~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++|+|.+++....-..-..+++.|.+... .....|+|||.||+|+..
T Consensus 68 ~~~--~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SIL--TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 222 46999999998864321011233344433211 123579999999999864
No 211
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.61 E-value=3.4e-07 Score=97.14 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=68.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceec------------cC------CCceeeEEEEEEEeC-----CeEEEEEeCCCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIH------------AF------EPGTTSVKEIVGTVD-----GVKIRVIDTPGL 747 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vs------------s~------~gtTt~~~~~~~evd-----GrkVtLIDTPGL 747 (1334)
+|+|+|.+|+|||||+++|+........ +. .+.|-........+. ...+.||||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864322210 00 112222222222222 367899999997
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 748 KSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 748 ~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+.. .....++. ..|++|+|+++...... ....+++.+. ....+.++|+||.|.+.
T Consensus 82 ~~f~----------~~~~~~~~--~aD~~llVvD~~~~~~~-~~~~~~~~~~-----~~~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNFM----------DEVAAALR--LSDGVVLVVDVVEGVTS-NTERLIRHAI-----LEGLPIVLVINKIDRLI 137 (213)
T ss_pred cchH----------HHHHHHHH--hCCEEEEEEECCCCCCH-HHHHHHHHHH-----HcCCCEEEEEECcccCc
Confidence 6431 12233444 35999999998765432 2233333332 12379999999999874
No 212
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.61 E-value=1.8e-07 Score=94.79 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=70.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|+|||||++++++.. +. ....+++.+.......+++ .++.|+||||...... ++ ..+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------~~--~~~ 68 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-YP-TEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK--------LR--PLC 68 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CC-CCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhcc--------cc--ccc
Confidence 589999999999999999998753 22 2233443333333445555 4678899999743210 00 112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCc--HHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLND--LPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qD--l~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. .+|++|+|.+++....- +. ..++..+... ....++|+|.||+|+..
T Consensus 69 ~~--~a~~~i~v~d~~~~~sf-~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 69 YP--DTDVFLLCFSVVNPSSF-QNISEKWIPEIRKH---NPKAPIILVGTQADLRT 118 (173)
T ss_pred cC--CCcEEEEEEECCCHHHH-HHHHHHHHHHHHhh---CCCCCEEEEeeChhhcc
Confidence 23 56999999998764321 11 1233333321 12479999999999864
No 213
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.60 E-value=5.3e-07 Score=105.55 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=76.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcce-------------------------ec-----cCCCceeeEEEEEEEeCCe
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTS-------------------------IH-----AFEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~-------------------------Vs-----s~~gtTt~~~~~~~evdGr 737 (1334)
..++|+++|.+++|||||+++|+...... .. ...+.|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 46899999999999999999998422111 00 1235667777777788889
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCC--CCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRD--LNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e--~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
++.|+||||..+ ....+...+. .+|++++|++++..... .+....+. +.+.++ ..++|||+|
T Consensus 86 ~i~iiDtpGh~~----------f~~~~~~~~~--~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviN 149 (426)
T TIGR00483 86 EVTIVDCPGHRD----------FIKNMITGAS--QADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAIN 149 (426)
T ss_pred EEEEEECCCHHH----------HHHHHHhhhh--hCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEE
Confidence 999999999431 1222323333 46999999999875211 12222222 222333 257999999
Q ss_pred ccCCCC
Q 000717 816 HAASAP 821 (1334)
Q Consensus 816 K~D~Le 821 (1334)
|+|+..
T Consensus 150 K~Dl~~ 155 (426)
T TIGR00483 150 KMDSVN 155 (426)
T ss_pred ChhccC
Confidence 999864
No 214
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.59 E-value=3.1e-07 Score=94.47 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=70.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH-H
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK-K 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk-k 766 (1334)
++|+|+|.+|||||||++.++... +. ....+++.........+++ .++.|+||||-.+.. .++ .
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----------~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-FP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-----------RLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-----------hhhhh
Confidence 689999999999999999998753 21 2233443332233345566 467899999975321 111 1
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++++|.+++....- ... ..+..+... ....|+|||.||.|+..
T Consensus 69 ~~~--~a~~~ilv~d~~~~~s~-~~~~~~w~~~i~~~---~~~~piilvgnK~Dl~~ 119 (175)
T cd01874 69 SYP--QTDVFLVCFSVVSPSSF-ENVKEKWVPEITHH---CPKTPFLLVGTQIDLRD 119 (175)
T ss_pred hcc--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHh---CCCCCEEEEEECHhhhh
Confidence 233 46999999998764321 111 123333321 22469999999999743
No 215
>PLN03108 Rab family protein; Provisional
Probab=98.59 E-value=3.9e-07 Score=96.61 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=69.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+|+|.+|+|||||+|.|++........ +..+.+.......+++. .+.|+||||.... .....
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~-~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~----------~~~~~ 73 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMITIDNKPIKLQIWDTAGQESF----------RSITR 73 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC-CCccceEEEEEEEECCEEEEEEEEeCCCcHHH----------HHHHH
Confidence 45899999999999999999999764322111 11111222223344453 5779999995321 11112
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc-ccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG-TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG-~ea~K~tIIVLTK~D~Le 821 (1334)
.++. ..|++|+|.+++....- ..+.+++..+.. .....++|+|.||+|+..
T Consensus 74 ~~~~--~ad~~vlv~D~~~~~s~---~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 74 SYYR--GAAGALLVYDITRRETF---NHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHhc--cCCEEEEEEECCcHHHH---HHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 2333 46999999998765421 112223322211 123468999999999754
No 216
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.59 E-value=2.5e-07 Score=112.89 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=77.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe-EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV-KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr-kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..+.+|+++|.+++|||||+|+|.+..... ...++.|.........+.+. +++||||||..+.. . ...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~---~r~ 153 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------S---MRA 153 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccCCceeecceEEEEEECCCcEEEEEECCCCcchh-------h---HHH
Confidence 466899999999999999999999864332 33345566655566666544 89999999965321 0 111
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+... ..|++++|++++..... +....++.+. ....|+|+++||+|+.
T Consensus 154 rga~--~aDiaILVVda~dgv~~-qT~e~i~~~~-----~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 154 RGAK--VTDIVVLVVAADDGVMP-QTIEAISHAK-----AANVPIIVAINKIDKP 200 (587)
T ss_pred hhhc--cCCEEEEEEECCCCCCH-hHHHHHHHHH-----HcCCCEEEEEECcccc
Confidence 2223 46999999998865432 3344443332 2347899999999974
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.58 E-value=6.1e-07 Score=110.12 Aligned_cols=114 Identities=22% Similarity=0.186 Sum_probs=74.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCccee--ccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSI--HAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~V--ss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
-|.++|.+++|||||+|+|.|.+.... ....+.|.......... +++.+.||||||.. ...+.+...
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe----------~fi~~m~~g 71 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE----------KFLSNMLAG 71 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH----------HHHHHHHHH
Confidence 589999999999999999998542211 11234555443333322 57789999999952 222333333
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. .+|++++|++++..... ++...+..+. .++ ..+.|||+||+|+..
T Consensus 72 ~~--~~D~~lLVVda~eg~~~-qT~ehl~il~-~lg---i~~iIVVlNKiDlv~ 118 (614)
T PRK10512 72 VG--GIDHALLVVACDDGVMA-QTREHLAILQ-LTG---NPMLTVALTKADRVD 118 (614)
T ss_pred hh--cCCEEEEEEECCCCCcH-HHHHHHHHHH-HcC---CCeEEEEEECCccCC
Confidence 44 56999999999876543 4566665543 333 235689999999864
No 218
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=2.6e-07 Score=103.07 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=104.7
Q ss_pred ccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee-----EE
Q 000717 654 LSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS-----VK 728 (1334)
Q Consensus 654 LSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~-----~~ 728 (1334)
++.....|++.| .+.+..+..+. ++.++|+.||.||.|||||+++|++..- ...+. +++.. ..
T Consensus 17 l~l~GHvGFdsL--PdQLV~ksv~~--------GF~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~-~H~~~~V~L~~~ 84 (406)
T KOG3859|consen 17 LQLAGHVGFDSL--PDQLVNKSVSQ--------GFCFNILCVGETGLGKSTLMDTLFNTKF-ESEPS-THTLPNVKLQAN 84 (406)
T ss_pred eeecCccCcccC--hHHHHHHHHhc--------CceEEEEEeccCCccHHHHHHHHhcccc-CCCCC-ccCCCCceeecc
Confidence 333444566666 56666655433 6899999999999999999999998642 21111 11111 11
Q ss_pred EEEEEeCC--eEEEEEeCCCCCCCCcc----hhhHHHHHHH----------HHHHHh---hCCCCEEEEEecCCCccCCC
Q 000717 729 EIVGTVDG--VKIRVIDTPGLKSSGVE----QGVNRKVLAS----------IKKFTK---KCAPDIVLYVDRLDSQTRDL 789 (1334)
Q Consensus 729 ~~~~evdG--rkVtLIDTPGL~ds~i~----d~~~ekIlre----------IkkaIk---kcgpDVVLLVIDad~~t~e~ 789 (1334)
.+...-.+ .+++|+||.|+++.--. ..+..++-.. |++.+. ..++|+|||+|.++......
T Consensus 85 TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKs 164 (406)
T KOG3859|consen 85 TYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKS 164 (406)
T ss_pred hhhhhhcCeeEEEEEEeecccccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhH
Confidence 11111122 36899999999985211 1122222211 222222 23799999999988766554
Q ss_pred CcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhcccee
Q 000717 790 NDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLR 855 (1334)
Q Consensus 790 qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~ 855 (1334)
.|+-.++.+. ...++|.|+.|+|.+.. .+..+-+.+.+.+++..-..-|.
T Consensus 165 lDLvtmk~Ld------skVNIIPvIAKaDtisK----------~eL~~FK~kimsEL~sngv~IYq 214 (406)
T KOG3859|consen 165 LDLVTMKKLD------SKVNIIPVIAKADTISK----------EELKRFKIKIMSELVSNGVQIYQ 214 (406)
T ss_pred HHHHHHHHHh------hhhhhHHHHHHhhhhhH----------HHHHHHHHHHHHHHHhcCceeee
Confidence 5666666664 33588999999997654 34444455667777765444443
No 219
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.58 E-value=1.2e-07 Score=107.80 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=55.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSS 750 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds 750 (1334)
.-+++|+|.|+||||||+|.|.+.+ ..+.+++.+|..+.-....++|.+|.++|+|||...
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEeecCceEEEEcCcccccC
Confidence 4689999999999999999999974 567788899999999999999999999999999764
No 220
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.58 E-value=1.6e-07 Score=109.08 Aligned_cols=115 Identities=23% Similarity=0.278 Sum_probs=67.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCC-----CcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGE-----EKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGe-----e~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
.+++|+|+|.+|+|||||||+|.|- ..+.++.. .+|.....+... .--.++++|.||+...... .+..++
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~---~~~Yl~ 108 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFP---PEEYLK 108 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-S-S-TTEEEEEE--GGGSS-----HHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCC---HHHHHH
Confidence 5799999999999999999999762 12222221 344555555432 2235899999999866543 233444
Q ss_pred HHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
.+ ....+|.+|++. .++++. .|..+++.|++ ..++..+|-||.|.
T Consensus 109 ~~----~~~~yD~fiii~-s~rf~~--ndv~La~~i~~-----~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 109 EV----KFYRYDFFIIIS-SERFTE--NDVQLAKEIQR-----MGKKFYFVRTKVDS 153 (376)
T ss_dssp HT----TGGG-SEEEEEE-SSS--H--HHHHHHHHHHH-----TT-EEEEEE--HHH
T ss_pred Hc----cccccCEEEEEe-CCCCch--hhHHHHHHHHH-----cCCcEEEEEecccc
Confidence 33 223468877764 455654 58899999984 55899999999996
No 221
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.57 E-value=1.9e-07 Score=106.68 Aligned_cols=126 Identities=19% Similarity=0.211 Sum_probs=87.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
-|-+||-||+|||||||+|... +..+.+++.||.........+ .+..+++-|.|||....... .-+-..+.++|+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G---~GLG~~FLrHIE 236 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEG---VGLGLRFLRHIE 236 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccC---CCccHHHHHHHH
Confidence 3668999999999999999987 567788888888765555444 45679999999998763221 011234556777
Q ss_pred hCCCCEEEEEecCCCccC--CCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTR--DLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~--e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Lep 822 (1334)
+| -++++|+|++.... -.++...+..=.+.|.+. ..++.+||+||+|...+
T Consensus 237 Rt--~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 237 RT--RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred hh--heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC
Confidence 66 78999999886532 112444444333445444 45899999999997654
No 222
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.57 E-value=3.7e-07 Score=113.72 Aligned_cols=116 Identities=17% Similarity=0.201 Sum_probs=76.3
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe----CCeEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV----DGVKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev----dGrkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
..+.+|+|+|.+++|||||+|+|.+..... ...++.|.....+...+ .+.+++||||||... ...
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~----------F~~ 310 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA----------FSS 310 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccCCccccccceEEEEEEecCCceEEEEEECCcHHH----------HHH
Confidence 466899999999999999999998764432 22234444333333333 357899999999532 111
Q ss_pred HHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+++. ..|++|+|++++..... +....++.+. ....|+||++||+|...
T Consensus 311 mr~rg~~--~aDiaILVVDA~dGv~~-QT~E~I~~~k-----~~~iPiIVViNKiDl~~ 361 (742)
T CHL00189 311 MRSRGAN--VTDIAILIIAADDGVKP-QTIEAINYIQ-----AANVPIIVAINKIDKAN 361 (742)
T ss_pred HHHHHHH--HCCEEEEEEECcCCCCh-hhHHHHHHHH-----hcCceEEEEEECCCccc
Confidence 2223444 35999999998865432 3445555443 24579999999999753
No 223
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.55 E-value=4.9e-07 Score=102.40 Aligned_cols=176 Identities=17% Similarity=0.095 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHH
Q 000717 543 LAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLE 622 (1334)
Q Consensus 543 laallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~le 622 (1334)
+|+.+||...+ +..-|.+|=+=|+|.=|++.-+.+.++++. ||-++|. ||+|=-. . .
T Consensus 33 makalr~i~~~---------l~~~D~iiEvrDaRiPLssrn~~~~~~~~~--------k~riiVl----NK~DLad-~-~ 89 (335)
T KOG2485|consen 33 MAKALRAIQNR---------LPLVDCIIEVRDARIPLSSRNELFQDFLPP--------KPRIIVL----NKMDLAD-P-K 89 (335)
T ss_pred HHHHHHHHHhh---------cccccEEEEeeccccCCccccHHHHHhcCC--------CceEEEE----ecccccC-c-h
Confidence 56777777532 235678899999999999998888888772 4556666 8877321 0 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCCh
Q 000717 623 KLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGK 702 (1334)
Q Consensus 623 Klq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGK 702 (1334)
..+.+...|. ++...... ...+......++.+++. +...+...............+++|+|-|||||
T Consensus 90 ~~k~~iq~~~---~~~~~~~~-------~~~c~~~~~~~v~~l~~---il~~~~~~l~r~irt~~~~~~vmVvGvPNVGK 156 (335)
T KOG2485|consen 90 EQKKIIQYLE---WQNLESYI-------KLDCNKDCNKQVSPLLK---ILTILSEELVRFIRTLNSEYNVMVVGVPNVGK 156 (335)
T ss_pred hhhHHHHHHH---hhcccchh-------hhhhhhhhhhccccHHH---HHHHHHHHHHHhhcccCCceeEEEEcCCCCCh
Confidence 1111222222 23222221 12233333334444431 11111111111112234678999999999999
Q ss_pred hhhhhhhcC-----CCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch
Q 000717 703 SATINSIFG-----EEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ 754 (1334)
Q Consensus 703 SSLINSLLG-----ee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d 754 (1334)
|||||++-. ...+.++..++.|+.+.......+...+.++||||+.-+.+.+
T Consensus 157 SsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 157 SSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred HHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCC
Confidence 999998842 2456678888999987765544556679999999999886653
No 224
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.54 E-value=6.4e-08 Score=111.45 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=102.2
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFL-RLVHRLGYSPE 643 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~-rl~~RLGlsp~ 643 (1334)
..|++|-|+|+|.-++..-..|..+||+..+ .|-++++. ||||=. ..+...-| +++.+. +.+
T Consensus 213 SSDVvvqVlDARDPmGTrc~~ve~ylkke~p----hKHli~vL----NKvDLV-------Ptwvt~~Wv~~lSke-yPT- 275 (572)
T KOG2423|consen 213 SSDVVVQVLDARDPMGTRCKHVEEYLKKEKP----HKHLIYVL----NKVDLV-------PTWVTAKWVRHLSKE-YPT- 275 (572)
T ss_pred ccceeEEeeeccCCcccccHHHHHHHhhcCC----cceeEEEe----eccccc-------cHHHHHHHHHHHhhh-Ccc-
Confidence 4588999999999999999999999997744 46677777 999832 22211111 111111 111
Q ss_pred chhhhhhhhcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCc
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG 723 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt 723 (1334)
+ .+..|.-+.-|.+.|++|-+-..++- .....+-|-+||.||+||||+||+|-..+++.+.++++.
T Consensus 276 ---i---AfHAsi~nsfGKgalI~llRQf~kLh--------~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGE 341 (572)
T KOG2423|consen 276 ---I---AFHASINNSFGKGALIQLLRQFAKLH--------SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGE 341 (572)
T ss_pred ---e---eeehhhcCccchhHHHHHHHHHHhhc--------cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCc
Confidence 1 13334444556666643222221111 113568899999999999999999999999999999998
Q ss_pred eeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 724 TTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 724 Tt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
|+--+.+.. -++|.|||+||+..+.
T Consensus 342 TKVWQYItL---mkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 342 TKVWQYITL---MKRIFLIDCPGVVYPS 366 (572)
T ss_pred chHHHHHHH---HhceeEecCCCccCCC
Confidence 885444433 3678999999998764
No 225
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.53 E-value=3.2e-07 Score=92.19 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=66.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.+|+|+|.+|||||||++++++..... ...+++.........+++. .+.++||||..+... +. ..+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~--~~~ 69 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LR--PLS 69 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCC--CCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh--------cc--ccc
Confidence 589999999999999999999864221 1222222211223344444 578999999643210 00 012
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....- .+. ..+..+... ....|+++|.||+|+.+
T Consensus 70 ~~--~~d~~i~v~~~~~~~s~-~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 70 YP--DTDVILMCFSIDSPDSL-ENIPEKWTPEVKHF---CPNVPIILVGNKKDLRN 119 (175)
T ss_pred cC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHhh---CCCCCEEEEeeChhccc
Confidence 22 46899999888754310 011 122223221 13479999999999764
No 226
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.53 E-value=3.6e-07 Score=94.77 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=68.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.+|+|+|.+|||||||++.+++..... ...++...........++ ..+.|+||||..... .++.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-----------~l~~- 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-----------RLRS- 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-----------cccc-
Confidence 379999999999999999999764322 111222111112233344 468899999964321 1111
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.....+|++++|.+++....- .... ..++..+.......|+|+|.||+|+...
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf-~~~~-~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSL-ENVE-SKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred ccccCCCEEEEEEECCCHHHH-HHHH-HHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 111256999999988865421 1111 1233333322235799999999998643
No 227
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.52 E-value=6.9e-07 Score=95.31 Aligned_cols=114 Identities=17% Similarity=0.298 Sum_probs=70.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCc-eeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHH-H
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPG-TTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASI-K 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gt-Tt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreI-k 765 (1334)
+.|+++|..|||||||++.++... +. ....++ +.........+++ .++.|+||+|-... +.+ .
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~-----------~~l~~ 67 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF-----------NSITS 67 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh-----------HHHHH
Confidence 479999999999999999998653 22 112222 1233333455666 46789999995321 111 2
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.++. +.|++++|.|++....- ... ..++.+.+.. ....++|+|.||.|+..
T Consensus 68 ~y~~--~ad~iIlVfDvtd~~Sf-~~l~~w~~~i~~~~--~~~~piilVgNK~DL~~ 119 (202)
T cd04120 68 AYYR--SAKGIILVYDITKKETF-DDLPKWMKMIDKYA--SEDAELLLVGNKLDCET 119 (202)
T ss_pred HHhc--CCCEEEEEEECcCHHHH-HHHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 3344 46999999999875431 111 2223332221 12468999999999753
No 228
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.52 E-value=6.6e-07 Score=92.01 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=68.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+|+|.+|||||||+.+++...- . ....++..........+++ .++.|+||||..... . +. ..+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~-~~--~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------R-LR--PLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh-------h-hh--hhh
Confidence 6899999999999999999886532 1 1222332222222334455 467899999953221 0 11 112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. +.|++|+|.+++....- ... ..++.+.. .....|+|||.||.|+..
T Consensus 70 ~~--~~d~~ilv~d~~~~~sf-~~~~~~~~~~~~~---~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 70 YP--QTDVFLICFSLVSPASF-ENVRAKWYPEVRH---HCPNTPIILVGTKLDLRD 119 (174)
T ss_pred cC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHH---hCCCCCEEEEeeChhhcc
Confidence 33 57999999999865421 111 12233332 123479999999999753
No 229
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.51 E-value=1.7e-06 Score=93.80 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=76.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC-Ccceecc-CCCceeeEEEEEEEe---CCeEEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE-EKTSIHA-FEPGTTSVKEIVGTV---DGVKIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe-e~a~Vss-~~gtTt~~~~~~~ev---dGrkVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
-..|.|+|++++|||+|+|.|+|. ..+.+++ ..++|+.+......+ .+..+.|+||||+.+........+..+-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 356899999999999999999998 3565554 456666554444444 35789999999999875432011112222
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHH-----------hcccCCceEEEEEeccCCCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNA-----------LGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~Iqei-----------FG~ea~K~tIIVLTK~D~Lep 822 (1334)
+...++ +++||.++...... +...+..+.+. .........+.|+--|....+
T Consensus 87 l~~lls----s~~i~n~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~ll~vvRD~~~~~~ 149 (224)
T cd01851 87 LATLLS----SVLIYNSWETILGD---DLAALMGLLKTTLEVLGLAGLTEFEKPKPLLLFVVRDFSLDTP 149 (224)
T ss_pred HHHHHh----CEEEEeccCcccHH---HHHHHHHHHHHHHHhhhhhhhhhcccCCCceEEEEecCcCCcc
Confidence 222222 78888877654332 33334444331 122233456777777766444
No 230
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.51 E-value=1.3e-06 Score=92.19 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=72.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCC-ceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEP-GTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~g-tTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..++|+|+|..|||||||++++.... +. ....+ .+.........+++ .++.|+||||.... ..+ .
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~-~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~-------~~l---~ 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGS-TE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF-------CTI---F 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHH---H
Confidence 45899999999999999999998742 21 11111 12233333445566 46788999996421 111 1
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+.. .+|++|+|.+++....- ..+-+|+.++.......++|||-||.|+..
T Consensus 73 ~~~~~--~ad~illVfD~t~~~Sf---~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 73 RSYSR--GAQGIILVYDITNRWSF---DGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHhc--CCCEEEEEEECcCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 12333 57999999999865431 122233333322223468999999999853
No 231
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.50 E-value=1.2e-06 Score=107.19 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=77.5
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcce-----ec----------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTS-----IH----------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ 754 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~-----Vs----------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d 754 (1334)
.+|+|+|..++|||||+++|+...... +. ...+.|..+....+.|++.+|.||||||..+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF---- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADF---- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHH----
Confidence 379999999999999999998532111 00 01244555566677889999999999997432
Q ss_pred hhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 755 GVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 755 ~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
...+.+++. .+|++|+|+++...... +...+++.+.. ...+.|||+||.|..
T Consensus 78 ------~~ev~~~l~--~aD~alLVVDa~~G~~~-qT~~~l~~a~~-----~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 78 ------GGEVERVLG--MVDGVLLLVDASEGPMP-QTRFVLKKALE-----LGLKPIVVINKIDRP 129 (594)
T ss_pred ------HHHHHHHHH--hCCEEEEEEeCCCCCcH-HHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 123344555 35999999998765432 34555555542 346889999999974
No 232
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.50 E-value=6.3e-07 Score=97.05 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=68.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
++|+|+|.+|||||||+|+++...... . ..|.........+....+.|+||||..... .+. ..++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~-------~l~---~~~~~ 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---T-VSTVGGAFYLKQWGPYNISIWDTAGREQFH-------GLG---SMYCR 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---C-CCccceEEEEEEeeEEEEEEEeCCCcccch-------hhH---HHHhc
Confidence 589999999999999999999765321 1 122222222233445678999999964321 111 11233
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc-ccCCceEEEEEeccCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG-TQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG-~ea~K~tIIVLTK~D~Le 821 (1334)
..|++|+|.+++....- ..+..++..+.- .....++|||.||+|+..
T Consensus 67 --~ad~~IlV~Dvt~~~Sf---~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 67 --GAAAVILTYDVSNVQSL---EELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred --cCCEEEEEEECCCHHHH---HHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 57999999998864321 112222222221 122368999999999865
No 233
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.48 E-value=6.8e-07 Score=109.31 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC------------------CeEEEEEeCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD------------------GVKIRVIDTPGLKSS 750 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd------------------GrkVtLIDTPGL~ds 750 (1334)
+..|+++|++|+|||||+|+|.+..... ...++.|.+.-.....+. -.+++|+||||....
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 4579999999999999999999874322 111223332111111110 123889999996322
Q ss_pred CcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 751 GVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 751 ~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .+ ...+.. ..|++++|++++..... +....++.+.. ...|.|+|+||+|+..
T Consensus 83 ~-------~l---~~~~~~--~aD~~IlVvD~~~g~~~-qt~e~i~~l~~-----~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 T-------NL---RKRGGA--LADLAILIVDINEGFKP-QTQEALNILRM-----YKTPFVVAANKIDRIP 135 (590)
T ss_pred H-------HH---HHHHHh--hCCEEEEEEECCcCCCH-hHHHHHHHHHH-----cCCCEEEEEECCCccc
Confidence 1 11 112333 46999999999865432 45555555442 3478999999999864
No 234
>PRK10218 GTP-binding protein; Provisional
Probab=98.48 E-value=7.6e-07 Score=109.18 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=78.4
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceec---------------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIH---------------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vs---------------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
-.+|+|+|..++|||||+++|+........ ...+.|.......+.+++.++.||||||..+..
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~-- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG-- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH--
Confidence 358999999999999999999963211110 112445555566677889999999999976532
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
..+..++. .+|++|+|+++...... +...+++.+.. ...+.||++||+|..
T Consensus 83 --------~~v~~~l~--~aDg~ILVVDa~~G~~~-qt~~~l~~a~~-----~gip~IVviNKiD~~ 133 (607)
T PRK10218 83 --------GEVERVMS--MVDSVLLVVDAFDGPMP-QTRFVTKKAFA-----YGLKPIVVINKVDRP 133 (607)
T ss_pred --------HHHHHHHH--hCCEEEEEEecccCccH-HHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 12233444 35999999998865432 45555555442 346889999999975
No 235
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.48 E-value=1e-07 Score=110.22 Aligned_cols=163 Identities=19% Similarity=0.207 Sum_probs=106.2
Q ss_pred ccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 564 SQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 564 s~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
...|++|-|+|+|.=|+.--.++-.|+...+. +|.++|+. ||.|=. ..+.++.+..-| .+-|-+.
T Consensus 145 e~sDVVleVlDARDPlgtR~~~vE~~V~~~~g----nKkLILVL----NK~DLV--PrEv~e~Wl~YL----r~~~ptv- 209 (435)
T KOG2484|consen 145 EASDVVLEVLDARDPLGTRCPEVEEAVLQAHG----NKKLILVL----NKIDLV--PREVVEKWLVYL----RREGPTV- 209 (435)
T ss_pred hhhheEEEeeeccCCCCCCChhHHHHHHhccC----CceEEEEe----ehhccC--CHHHHHHHHHHH----HhhCCcc-
Confidence 36799999999999888888888888765532 58888888 877632 123334333333 3444322
Q ss_pred chhhhhhhhcccccccCCchhhhc------HHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCccee
Q 000717 644 DSLVGQVLHRLSLIAGRQTGQLFS------LDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSI 717 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~dLl~------LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~V 717 (1334)
+++.|..+.......+. .+.+...+.. --....+...+++-|+|.|||||||+||+|..+..+.+
T Consensus 210 -------~fkast~~~~~~~~~~~~s~c~gae~l~~~lgn--y~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~v 280 (435)
T KOG2484|consen 210 -------AFKASTQMQNSNSKNLQSSVCFGAETLMKVLGN--YCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNV 280 (435)
T ss_pred -------eeecccccccccccccccchhhhHHHHHHHhcC--cccccccCcceEeeeecCCCCChhHHHHHHHHhccccC
Confidence 12223222211101110 1111111100 01123456789999999999999999999999999999
Q ss_pred ccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 718 HAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 718 ss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
++.++.|+..+.... +..|.|+|.||+.-...+
T Consensus 281 g~~pGvT~smqeV~L---dk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 281 GNVPGVTRSMQEVKL---DKKIRLLDSPGIVPPSID 313 (435)
T ss_pred CCCccchhhhhheec---cCCceeccCCceeecCCC
Confidence 999999998887766 778999999999876554
No 236
>PLN00023 GTP-binding protein; Provisional
Probab=98.47 E-value=1.1e-06 Score=100.99 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=69.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee--EEEEEEEeC---------------CeEEEEEeCCCCCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVD---------------GVKIRVIDTPGLKSS 750 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~--~~~~~~evd---------------GrkVtLIDTPGL~ds 750 (1334)
..+||+|+|..|||||||++.+++... .. .. ..|.. .......++ ...+.|+||+|-...
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~-~~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSS-IA-RP-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCc-cc-cc-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 468999999999999999999997632 11 11 11221 111222322 245899999995321
Q ss_pred CcchhhHHHHHHHHHH-HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc----------cCCceEEEEEeccCC
Q 000717 751 GVEQGVNRKVLASIKK-FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT----------QIWRSAIVTLTHAAS 819 (1334)
Q Consensus 751 ~i~d~~~ekIlreIkk-aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~----------ea~K~tIIVLTK~D~ 819 (1334)
+.++. ++. +.+++|+|.+++....-..-...++.|...... ....++|||-||+|+
T Consensus 97 -----------rsL~~~yyr--~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 97 -----------KDCRSLFYS--QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred -----------hhhhHHhcc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 11222 233 579999999988754211111233333332110 013589999999998
Q ss_pred CCC
Q 000717 820 APP 822 (1334)
Q Consensus 820 Lep 822 (1334)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 643
No 237
>PTZ00416 elongation factor 2; Provisional
Probab=98.47 E-value=1.2e-06 Score=111.05 Aligned_cols=115 Identities=17% Similarity=0.088 Sum_probs=77.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCC---------------ceeeEEEEEEEeC----------CeEEEEE
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEP---------------GTTSVKEIVGTVD----------GVKIRVI 742 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~g---------------tTt~~~~~~~evd----------GrkVtLI 742 (1334)
.-.+|+|+|..++|||||+++|+...........+ .|-........|. ++.|.||
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 34689999999999999999999754322111111 1222112223333 5679999
Q ss_pred eCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 743 DTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 743 DTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
||||..+. ..++..++. ..|++|+|+++...... +...+++.+.+ ...|.|+++||+|..
T Consensus 98 DtPG~~~f----------~~~~~~al~--~~D~ailVvda~~g~~~-~t~~~~~~~~~-----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDF----------SSEVTAALR--VTDGALVVVDCVEGVCV-QTETVLRQALQ-----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhH----------HHHHHHHHh--cCCeEEEEEECCCCcCc-cHHHHHHHHHH-----cCCCEEEEEEChhhh
Confidence 99998642 233444554 46999999998876543 56777776653 346999999999986
No 238
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.47 E-value=1.3e-06 Score=90.90 Aligned_cols=114 Identities=15% Similarity=0.134 Sum_probs=67.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+||+++|.+|||||||++++++..- . ....++. .+........++ ..+.|+||+|-.... . ....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~---~~~~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-D-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI-------N---MLPL 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-------H---hhHH
Confidence 5899999999999999999987632 1 1122222 123233445555 467899999953210 1 1112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Le 821 (1334)
++. .+|++++|.+++....- ..+-+++....... ...+ |+|.||+|+..
T Consensus 69 ~~~--~a~~iilv~D~t~~~s~---~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 69 VCN--DAVAILFMFDLTRKSTL---NSIKEWYRQARGFNKTAIP-ILVGTKYDLFA 118 (182)
T ss_pred HCc--CCCEEEEEEECcCHHHH---HHHHHHHHHHHHhCCCCCE-EEEEEchhccc
Confidence 233 56999999998765421 12233333332211 1234 78899999864
No 239
>PRK01889 GTPase RsgA; Reviewed
Probab=98.47 E-value=1.8e-07 Score=107.86 Aligned_cols=108 Identities=23% Similarity=0.259 Sum_probs=68.0
Q ss_pred hcccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccC------CCcee
Q 000717 652 HRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAF------EPGTT 725 (1334)
Q Consensus 652 ~rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~------~gtTt 725 (1334)
+.+|+.++.|+..|. ..+ ...-+++|+|.+|+|||||+|.|+|.....++.. ..+|+
T Consensus 175 i~vSa~~g~gl~~L~------~~L-----------~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt 237 (356)
T PRK01889 175 LAVSALDGEGLDVLA------AWL-----------SGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTT 237 (356)
T ss_pred EEEECCCCccHHHHH------HHh-----------hcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchh
Confidence 468999998877762 111 1235799999999999999999998765544322 11222
Q ss_pred -eEEEEEEEeCCeEEEEEeCCCCCCCCcch--hhHHHHHHHHHHHHhhCCCCEEEEE
Q 000717 726 -SVKEIVGTVDGVKIRVIDTPGLKSSGVEQ--GVNRKVLASIKKFTKKCAPDIVLYV 779 (1334)
Q Consensus 726 -~~~~~~~evdGrkVtLIDTPGL~ds~i~d--~~~ekIlreIkkaIkkcgpDVVLLV 779 (1334)
....... ..+ ..++||||+....+.. ......+.++..+...|+++-|.+.
T Consensus 238 ~~~~l~~l-~~~--~~l~DtpG~~~~~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 238 THRELHPL-PSG--GLLIDTPGMRELQLWDAEDGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred hhccEEEe-cCC--CeecCCCchhhhcccCchhhHHHhHHHHHHHHccCCCCCCCCC
Confidence 2222222 122 2688999997764432 1133456677777777776655544
No 240
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.44 E-value=1.5e-06 Score=90.31 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=67.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH-
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK- 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk- 766 (1334)
++|+++|.+|||||||++++++.. +. ....++..........+++. ++.|+||||-... ..+..
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~-----------~~~~~~ 68 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYY-----------DNVRPL 68 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhcchh
Confidence 689999999999999999998763 22 12223322222223445554 5789999995321 11111
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCc--HHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLND--LPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qD--l~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
++. ..|++|+|.+++....- .. ...+..+.+.. ...++|+|-||.|+.
T Consensus 69 ~~~--~a~~~ilvfdit~~~Sf-~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~ 118 (178)
T cd04131 69 CYP--DSDAVLICFDISRPETL-DSVLKKWRGEIQEFC---PNTKVLLVGCKTDLR 118 (178)
T ss_pred hcC--CCCEEEEEEECCChhhH-HHHHHHHHHHHHHHC---CCCCEEEEEEChhhh
Confidence 222 56999999999865431 11 12233333322 246899999999974
No 241
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.43 E-value=1.8e-06 Score=88.97 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=64.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
||+|+|++|+|||||+++|.|.+... .-|..+ .+.+ .+|||||=+-. +....+.+.....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~-----~KTq~i-----~~~~---~~IDTPGEyiE------~~~~y~aLi~ta~- 62 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY-----KKTQAI-----EYYD---NTIDTPGEYIE------NPRFYHALIVTAQ- 62 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc-----Ccccee-----Eecc---cEEECChhhee------CHHHHHHHHHHHh-
Confidence 79999999999999999999975311 122222 1223 36999994311 2233344432222
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+|+|++|.+++....-. .-. |..-..+|+|=|+||+|+..
T Consensus 63 -dad~V~ll~dat~~~~~~-pP~--------fa~~f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 63 -DADVVLLLQDATEPRSVF-PPG--------FASMFNKPVIGVITKIDLPS 103 (143)
T ss_pred -hCCEEEEEecCCCCCccC-Cch--------hhcccCCCEEEEEECccCcc
Confidence 469999999998754321 111 22233489999999999873
No 242
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.41 E-value=1.3e-06 Score=90.38 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=77.7
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
....+|+++|..|+||||+++.|.......+ ..|.........+.+..+.++|.+|=.... . . -+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~--~-----~---w~~ 77 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFR--P-----L---WKS 77 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGG--G-----G---GGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEecccccccc--c-----c---cee
Confidence 4579999999999999999999987643332 224445555667789999999999943211 0 0 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
++. .+|+++||+|.....+ -....+.+.+.+... ...|++|++||.|...
T Consensus 78 y~~--~~~~iIfVvDssd~~~---l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 78 YFQ--NADGIIFVVDSSDPER---LQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp GHT--TESEEEEEEETTGGGG---HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ecc--ccceeEEEEeccccee---ecccccchhhhcchhhcccceEEEEeccccccC
Confidence 333 4599999999886542 123344445544432 3579999999999754
No 243
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.41 E-value=1.5e-06 Score=106.43 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=71.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceec--------c------CCCceeeEEEEEEEe---CC--eEEEEEeCCCCCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIH--------A------FEPGTTSVKEIVGTV---DG--VKIRVIDTPGLKSS 750 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vs--------s------~~gtTt~~~~~~~ev---dG--rkVtLIDTPGL~ds 750 (1334)
.+|+|+|.+++|||||+++|+........ + ..+.|.........| ++ .++.||||||..+.
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999865322110 1 113444443344444 23 57899999998643
Q ss_pred CcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 751 GVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 751 ~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
...+.+++.. .|++|+|++++..... +....+.... ....++|+|+||+|+.
T Consensus 84 ----------~~~v~~~l~~--aD~aILVvDat~g~~~-qt~~~~~~~~-----~~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 84 ----------SYEVSRSLAA--CEGALLLVDAAQGIEA-QTLANVYLAL-----ENDLEIIPVINKIDLP 135 (595)
T ss_pred ----------HHHHHHHHHh--CCEEEEEecCCCCCCH-hHHHHHHHHH-----HcCCCEEEEEECcCCC
Confidence 1223345554 4999999999875432 2333332222 1346899999999974
No 244
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.40 E-value=2.8e-06 Score=99.43 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=70.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCccee--ccCCCceeeEEE----------------EEEE----------eCCeEE
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSI--HAFEPGTTSVKE----------------IVGT----------VDGVKI 739 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~V--ss~~gtTt~~~~----------------~~~e----------vdGrkV 739 (1334)
..++|+++|.+++|||||+++|.+...... ....+.|..+.. +... ..++.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999976421000 000011111110 0000 024689
Q ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCC
Q 000717 740 RVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 740 tLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
.||||||.. .....+...+. .+|++++|++++......+....+..+. .++ .+++|||+||+|+
T Consensus 83 ~liDtPGh~----------~f~~~~~~g~~--~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~g---i~~iIVvvNK~Dl 146 (406)
T TIGR03680 83 SFVDAPGHE----------TLMATMLSGAA--LMDGALLVIAANEPCPQPQTKEHLMALE-IIG---IKNIVIVQNKIDL 146 (406)
T ss_pred EEEECCCHH----------HHHHHHHHHHH--HCCEEEEEEECCCCccccchHHHHHHHH-HcC---CCeEEEEEEcccc
Confidence 999999952 12233333333 3699999999986541123445555442 333 2578999999998
Q ss_pred CC
Q 000717 820 AP 821 (1334)
Q Consensus 820 Le 821 (1334)
..
T Consensus 147 ~~ 148 (406)
T TIGR03680 147 VS 148 (406)
T ss_pred CC
Confidence 64
No 245
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.39 E-value=2.1e-06 Score=103.83 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=75.0
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcce-----e----------ccC------CCceeeEEEEEEEeCCeEEEEEeCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTS-----I----------HAF------EPGTTSVKEIVGTVDGVKIRVIDTPG 746 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~-----V----------ss~------~gtTt~~~~~~~evdGrkVtLIDTPG 746 (1334)
...+|+|+|.+++|||||+++|+-....+ + .+. .+.|.......+.+++.++.||||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 45799999999999999999986321111 1 000 02233344456778899999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 747 LKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 747 L~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
..+. ...+.+++. .+|++|+|+++...... +...+++... ....|+|+++||+|..
T Consensus 90 ~~df----------~~~~~~~l~--~aD~aIlVvDa~~gv~~-~t~~l~~~~~-----~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDF----------SEDTYRTLT--AVDNCLMVIDAAKGVET-RTRKLMEVTR-----LRDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhH----------HHHHHHHHH--hCCEEEEEEECCCCCCH-HHHHHHHHHH-----hcCCCEEEEEECcccc
Confidence 7432 123444555 35999999998765332 2334444332 2347999999999974
No 246
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.39 E-value=2.8e-06 Score=88.93 Aligned_cols=114 Identities=13% Similarity=0.107 Sum_probs=69.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+++|.+|||||||++.++... +. ....++..........+++. .+.|+||+|-... ..++
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~-f~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~-----------~~~~ 70 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDC-FP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DNVR 70 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC-CC-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhh-----------Hhhh
Confidence 35899999999999999999998753 21 12223322222223444554 5789999995321 1122
Q ss_pred H-HHhhCCCCEEEEEecCCCccCCCCc--HHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 K-FTKKCAPDIVLYVDRLDSQTRDLND--LPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 k-aIkkcgpDVVLLVIDad~~t~e~qD--l~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
. ++. +.|++|+|.+++....- .. ...++.+.+.. ...++|+|.||.|+.
T Consensus 71 ~~~~~--~ad~~ilvyDit~~~Sf-~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 122 (182)
T cd04172 71 PLSYP--DSDAVLICFDISRPETL-DSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 122 (182)
T ss_pred hhhcC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHHC---CCCCEEEEeEChhhh
Confidence 1 222 57999999998865431 11 12333333322 246899999999974
No 247
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.39 E-value=1e-06 Score=103.13 Aligned_cols=89 Identities=24% Similarity=0.297 Sum_probs=61.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEE---------------------eCC---eEEEEEeCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT---------------------VDG---VKIRVIDTP 745 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~e---------------------vdG---rkVtLIDTP 745 (1334)
++|.|+|.||||||||+|+|++.. +.+++++.+|.+....... +++ .++.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999875 4567777777665543322 122 468899999
Q ss_pred CCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCC
Q 000717 746 GLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDS 784 (1334)
Q Consensus 746 GL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~ 784 (1334)
|+....... +.+-..+...+.. .|++++|+|...
T Consensus 81 Gl~~ga~~g---~glg~~fL~~ir~--ad~ll~Vvd~~~ 114 (396)
T PRK09602 81 GLVPGAHEG---RGLGNQFLDDLRQ--ADALIHVVDASG 114 (396)
T ss_pred CcCCCccch---hhHHHHHHHHHHH--CCEEEEEEeCCC
Confidence 997642111 1222334444554 499999999863
No 248
>PRK13351 elongation factor G; Reviewed
Probab=98.39 E-value=2.5e-06 Score=105.66 Aligned_cols=115 Identities=15% Similarity=0.097 Sum_probs=76.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcce-----e------cc------CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTS-----I------HA------FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~-----V------ss------~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
-.+|+|+|..|+|||||+++|+...... + .+ ..+.|.........+.+.++.||||||..+.
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df- 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF- 86 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH-
Confidence 4789999999999999999998532110 0 00 0133444445567788999999999997542
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+..++.. .|++++|++++..... +...+++.+. ....|.++|+||+|...
T Consensus 87 ---------~~~~~~~l~~--aD~~ilVvd~~~~~~~-~~~~~~~~~~-----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 87 ---------TGEVERSLRV--LDGAVVVFDAVTGVQP-QTETVWRQAD-----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred ---------HHHHHHHHHh--CCEEEEEEeCCCCCCH-HHHHHHHHHH-----hcCCCEEEEEECCCCCC
Confidence 1223344553 4999999998865432 3444554443 23478999999999764
No 249
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.39 E-value=3.3e-06 Score=88.09 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=68.5
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.++|+++|.+|||||||++.++...- . ....++..........+++. .+.|+||||-... +.++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-----------~~l~~ 69 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF-P-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEY-----------DRLRT 69 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC-C-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhh-----------hhhhh
Confidence 47999999999999999999986532 1 11222222222222344554 5788999995321 12222
Q ss_pred -HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 -FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 -aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ++|++|+|.+++....- .... -.|+..+.......|+|||.||.|+..
T Consensus 70 ~~~~--~a~~~ilvydit~~~Sf-~~~~-~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 70 LSYP--QTNVFIICFSIASPSSY-ENVR-HKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhcc--CCCEEEEEEECCCHHHH-HHHH-HHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 222 57999999998865431 1111 012222222223479999999999743
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.38 E-value=4.5e-06 Score=99.14 Aligned_cols=117 Identities=17% Similarity=0.154 Sum_probs=77.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcce------------------------ec------cCCCceeeEEEEEEEeCCe
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTS------------------------IH------AFEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~------------------------Vs------s~~gtTt~~~~~~~evdGr 737 (1334)
..++|+++|..++|||||+..|+...... +. ...+.|.+.....+.++++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 46899999999999999999887411000 00 1125566666677788899
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccC------CCCcHHHHHHHHHHhcccCCceEE
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTR------DLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~------e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
.++||||||..+ ....+...+. .+|++++|+++..... ..+..+.+..+. .+| .+++|
T Consensus 86 ~i~lIDtPGh~~----------f~~~~~~g~~--~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---i~~ii 149 (446)
T PTZ00141 86 YFTIIDAPGHRD----------FIKNMITGTS--QADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---VKQMI 149 (446)
T ss_pred EEEEEECCChHH----------HHHHHHHhhh--hcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---CCeEE
Confidence 999999999532 2233334444 4699999999886531 123445554433 223 24678
Q ss_pred EEEeccCCC
Q 000717 812 VTLTHAASA 820 (1334)
Q Consensus 812 IVLTK~D~L 820 (1334)
|++||+|..
T Consensus 150 v~vNKmD~~ 158 (446)
T PTZ00141 150 VCINKMDDK 158 (446)
T ss_pred EEEEccccc
Confidence 999999953
No 251
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.38 E-value=1e-06 Score=103.38 Aligned_cols=126 Identities=17% Similarity=0.156 Sum_probs=81.9
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCC----Ccc-----------eeccCCC---ceeeEEE---E--EEEeC---CeEEE
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGE----EKT-----------SIHAFEP---GTTSVKE---I--VGTVD---GVKIR 740 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGe----e~a-----------~Vss~~g---tTt~~~~---~--~~evd---GrkVt 740 (1334)
+..+.|.|+|+.++|||||||++.+. +.. .+++.++ +|++... . ..... ..+++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45789999999999999999999998 555 5566667 7776654 1 22222 25799
Q ss_pred EEeCCCCCCCCcchhh-HHH------------------HHHHHHHHHhhCCCCEEEEEe-cCC-------CccCCCCcHH
Q 000717 741 VIDTPGLKSSGVEQGV-NRK------------------VLASIKKFTKKCAPDIVLYVD-RLD-------SQTRDLNDLP 793 (1334)
Q Consensus 741 LIDTPGL~ds~i~d~~-~ek------------------IlreIkkaIkkcgpDVVLLVI-Dad-------~~t~e~qDl~ 793 (1334)
+|||+|+.+....... ..+ .---.++.+.. ..++.|+|. |.+ .+.. .+.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d-hstIgivVtTDgsi~dI~Re~y~~--aEe~ 171 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE-HSTIGVVVTTDGTITDIPREDYVE--AEER 171 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh-cCcEEEEEEcCCCccccccccchH--HHHH
Confidence 9999999875311100 001 00013445552 357888877 542 1221 3567
Q ss_pred HHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 794 LLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 794 lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+++.++ ...+|.|+|+|+.|-.
T Consensus 172 ~i~eLk-----~~~kPfiivlN~~dp~ 193 (492)
T TIGR02836 172 VIEELK-----ELNKPFIILLNSTHPY 193 (492)
T ss_pred HHHHHH-----hcCCCEEEEEECcCCC
Confidence 777776 4679999999999944
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.37 E-value=1.3e-06 Score=99.80 Aligned_cols=87 Identities=24% Similarity=0.257 Sum_probs=60.0
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe---------------------C---CeEEEEEeCCCC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV---------------------D---GVKIRVIDTPGL 747 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev---------------------d---GrkVtLIDTPGL 747 (1334)
|+|+|.||||||||+|+|++.. +.+++++.+|.........+ + ..++.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999875 56777877776654332221 2 247999999999
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCC
Q 000717 748 KSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDS 784 (1334)
Q Consensus 748 ~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~ 784 (1334)
...... .+.+...+...++. +|++++|+|+..
T Consensus 80 v~ga~~---~~glg~~fL~~ir~--aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGAHE---GKGLGNKFLDDLRD--ADALIHVVDASG 111 (318)
T ss_pred CCCccc---hhhHHHHHHHHHHH--CCEEEEEEeCCC
Confidence 654211 11222334445554 499999999874
No 253
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.36 E-value=3.9e-06 Score=89.96 Aligned_cols=113 Identities=22% Similarity=0.218 Sum_probs=69.2
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeE--EEEEEEeC-----C--eEEEEEeCCCCCCCCcchhhHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSV--KEIVGTVD-----G--VKIRVIDTPGLKSSGVEQGVNRKV 760 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~--~~~~~evd-----G--rkVtLIDTPGL~ds~i~d~~~ekI 760 (1334)
++|+++|.+|||||||++.+++..... .. ..|..+ ......+. + ..+.|+||+|-...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~-~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~---------- 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RP-SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV---------- 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CC-CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH----------
Confidence 589999999999999999999764221 11 222221 11122331 2 36889999995321
Q ss_pred HHHHH-HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc--------------------ccCCceEEEEEeccCC
Q 000717 761 LASIK-KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG--------------------TQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 761 lreIk-kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG--------------------~ea~K~tIIVLTK~D~ 819 (1334)
+.++ .++. +.|++|+|.+++....- ..+-+|+.++.- .....|+|||-||.|+
T Consensus 68 -~~l~~~~yr--~ad~iIlVyDvtn~~Sf---~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl 141 (202)
T cd04102 68 -KSTRAVFYN--QVNGIILVHDLTNRKSS---QNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQ 141 (202)
T ss_pred -HHHHHHHhC--cCCEEEEEEECcChHHH---HHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccc
Confidence 1222 2333 57999999999876431 223344443321 1124689999999998
Q ss_pred CC
Q 000717 820 AP 821 (1334)
Q Consensus 820 Le 821 (1334)
.+
T Consensus 142 ~~ 143 (202)
T cd04102 142 IP 143 (202)
T ss_pred hh
Confidence 64
No 254
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.35 E-value=3.5e-06 Score=92.22 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=68.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++|+|+|.+|||||||++.+++.. +. ....++..........+++ ..+.|+||+|-... +.+.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~-----------~~~~ 78 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY-----------DNVR 78 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh-----------HHHH
Confidence 45899999999999999999998753 21 1222222222222334444 46789999994221 1121
Q ss_pred -HHHhhCCCCEEEEEecCCCccCCCCcHHH-HHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 -KFTKKCAPDIVLYVDRLDSQTRDLNDLPL-LRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 -kaIkkcgpDVVLLVIDad~~t~e~qDl~l-Le~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.++. ..|++|+|.+++....- ..+ -.|+..+.......++|+|.||.|+.
T Consensus 79 ~~~~~--~ad~vIlVyDit~~~Sf---~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 79 PLCYS--DSDAVLLCFDISRPETV---DSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHcC--CCcEEEEEEECCChHHH---HHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 1233 57999999999865421 112 22333322112246899999999974
No 255
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.35 E-value=3.4e-06 Score=91.64 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=68.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH-
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK- 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk- 766 (1334)
++|+|+|.+|||||||++.+++..- . ....++..........+++. .+.|+||+|-... ..++.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~-----------~~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-P-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYY-----------DNVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHH-----------HHHhHH
Confidence 6899999999999999999987532 1 12223322222223445554 5778999995321 11211
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHH-HHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLR-SITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe-~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|++|+|.+++....- ..+.+ |+..+.-.....|+|||.||.|+..
T Consensus 69 ~~~--~~d~illvfdis~~~Sf---~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 AYP--DSDAVLICFDISRPETL---DSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred hcc--CCCEEEEEEECCCHHHH---HHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 222 57999999998865321 12222 2211111123468999999999754
No 256
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.34 E-value=1.9e-06 Score=96.66 Aligned_cols=126 Identities=13% Similarity=0.126 Sum_probs=80.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcce-ecc-CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTS-IHA-FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~-Vss-~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
+...+++++|++|||||||||.|+...... ++. ..+.|+...-+. -|..+++||.||+..........+......
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee---ccceEEEEecCCcccccCCccCcchHhHhH
Confidence 456899999999999999999999765432 222 334444333333 378899999999776543332333333444
Q ss_pred HHHHhhCC-CCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCA-PDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcg-pDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+.++.... .-.|+++++++..... .|...+.++. +...|..+||||+|...
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~-~D~~~i~~~g-----e~~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQP-TDNPEIAWLG-----ENNVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCC-CChHHHHHHh-----hcCCCeEEeeehhhhhh
Confidence 44443321 1224444455544433 5788887775 45679999999999764
No 257
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.34 E-value=2.6e-06 Score=107.95 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=77.0
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCC---------------CceeeEEEEEEEe----------------CC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE---------------PGTTSVKEIVGTV----------------DG 736 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~---------------gtTt~~~~~~~ev----------------dG 736 (1334)
.-.+|+|+|..++|||||+++|+.....+..... +.|-.+......| .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 3468999999999999999999865432211111 2222222223333 26
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
..|.||||||..+. ..++..++.. .|.+|+|+++...... +...+++.+. ....+.|+++||
T Consensus 98 ~~inliDtPGh~dF----------~~e~~~al~~--~D~ailVvda~~Gv~~-~t~~~~~~~~-----~~~~p~i~~iNK 159 (843)
T PLN00116 98 YLINLIDSPGHVDF----------SSEVTAALRI--TDGALVVVDCIEGVCV-QTETVLRQAL-----GERIRPVLTVNK 159 (843)
T ss_pred eEEEEECCCCHHHH----------HHHHHHHHhh--cCEEEEEEECCCCCcc-cHHHHHHHHH-----HCCCCEEEEEEC
Confidence 67899999997432 2333445553 4999999998877653 5666776654 244789999999
Q ss_pred cCCCC
Q 000717 817 AASAP 821 (1334)
Q Consensus 817 ~D~Le 821 (1334)
+|...
T Consensus 160 ~D~~~ 164 (843)
T PLN00116 160 MDRCF 164 (843)
T ss_pred Ccccc
Confidence 99874
No 258
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.34 E-value=2.6e-06 Score=103.13 Aligned_cols=116 Identities=10% Similarity=0.066 Sum_probs=75.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcc--e---e----------ccC------CCceeeEEEEEEEeCCeEEEEEeCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKT--S---I----------HAF------EPGTTSVKEIVGTVDGVKIRVIDTPG 746 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a--~---V----------ss~------~gtTt~~~~~~~evdGrkVtLIDTPG 746 (1334)
...+|+|+|.+++|||||+++|+-.... . + ++. .+.|-......+.+++.++.||||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 4578999999999999999999732111 1 1 100 01222333456778899999999999
Q ss_pred CCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 747 LKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 747 L~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+.. ..+.+++. .+|++|+|+++...... +...+++... ....|+|+++||+|...
T Consensus 89 ~~df~----------~~~~~~l~--~aD~aIlVvDa~~gv~~-~t~~l~~~~~-----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFS----------EDTYRTLT--AVDSALMVIDAAKGVEP-QTRKLMEVCR-----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhH----------HHHHHHHH--HCCEEEEEEecCCCCCH-HHHHHHHHHH-----hcCCCEEEEEECCcccc
Confidence 75421 22334454 35999999998765432 3344444332 24579999999999653
No 259
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.33 E-value=5.4e-06 Score=86.64 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
++|+++|..|||||||+|+|.+............+........... ..++.++||+|..+. +.+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-----------~~~~~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-----------RSLRPEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-----------HHHHHHH
Confidence 8999999999999999999998754332211111111111111111 356889999996321 1222211
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Lep 822 (1334)
..+++++++|.+....... + .+.+.+.+.+... ...++|+|.||.|+...
T Consensus 75 -~~~~~~~l~~~d~~~~~~~--~-~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 75 -YRGANGILIVYDSTLRESS--D-ELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred -hcCCCEEEEEEecccchhh--h-HHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 1257899999887763331 2 2222222222222 25799999999998764
No 260
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.30 E-value=3.7e-06 Score=102.96 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=68.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe------CC------------eEEEEEeCCCCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV------DG------------VKIRVIDTPGLKS 749 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev------dG------------rkVtLIDTPGL~d 749 (1334)
++..|+++|.+|+|||||+|+|.+...... ..++.|.+.-.....+ .+ ..++|+||||..+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~-~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAK-EAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccC-CCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456899999999999999999987643211 1112222211100000 00 1278999999743
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.. ....+.+. ..|++++|++++..... +....++.+.. ...|+|+++||+|..
T Consensus 84 f~----------~~~~~~~~--~aD~~IlVvDa~~g~~~-qt~e~i~~~~~-----~~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FT----------NLRKRGGA--LADIAILVVDINEGFQP-QTIEAINILKR-----RKTPFVVAANKIDRI 136 (586)
T ss_pred HH----------HHHHHhHh--hCCEEEEEEECCCCCCH-hHHHHHHHHHH-----cCCCEEEEEECcCCc
Confidence 21 01112233 35999999998865332 45555554432 347899999999975
No 261
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.30 E-value=4.7e-06 Score=88.04 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=64.2
Q ss_pred CccEEEEEeecCCChhhhhhhhc-CCCcceeccCCCceeeEEEEEEEe--CCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIF-GEEKTSIHAFEPGTTSVKEIVGTV--DGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL-Gee~a~Vss~~gtTt~~~~~~~ev--dGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..++|+|+|.+|||||||++.++ |.......+..+. ......... +...+.++||||-.... .+.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~i~~~Dt~g~~~~~-------~~~--- 75 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGV--EVHPLKFYTNCGPICFNVWDTAGQEKFG-------GLR--- 75 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccce--EEEEEEEEECCeEEEEEEEECCCchhhh-------hhh---
Confidence 46899999999999999997654 4321111111111 122222222 34578899999953221 111
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
..++. ..+++++|.+++....- ..+..++..+.......++++|.||+|..
T Consensus 76 ~~~~~--~~~~~i~v~d~~~~~s~---~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 76 DGYYI--KGQCAIIMFDVTSRITY---KNVPNWHRDIVRVCENIPIVLVGNKVDVK 126 (215)
T ss_pred HHHhc--cCCEEEEEEECcCHHHH---HHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 12233 35899999998754321 11222222222111235788899999974
No 262
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.29 E-value=5.3e-06 Score=85.89 Aligned_cols=114 Identities=12% Similarity=0.127 Sum_probs=66.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.+|+|+|.+|+|||||+|.|+...... ...+++.........+++. .+.++||||....... ... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~~~--~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE--EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERL--------RPL--S 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCChhcccc--------chh--h
Confidence 589999999999999999998432211 1112222222223344443 4788999996433110 001 1
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++|+|.+++....- .+. ..+..+.... ...|+|+|.||+|+..
T Consensus 70 ~~--~a~~~llv~~i~~~~s~-~~~~~~~~~~i~~~~---~~~piilvgnK~Dl~~ 119 (187)
T cd04129 70 YS--KAHVILIGFAVDTPDSL-ENVRTKWIEEVRRYC---PNVPVILVGLKKDLRQ 119 (187)
T ss_pred cC--CCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhC---CCCCEEEEeeChhhhh
Confidence 22 46899999888754321 111 2333333222 2379999999999743
No 263
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.27 E-value=4.4e-06 Score=104.33 Aligned_cols=116 Identities=16% Similarity=0.122 Sum_probs=74.0
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcc---------eeccC------CCceeeEE----EEEEEeCCeEEEEEeCCCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKT---------SIHAF------EPGTTSVK----EIVGTVDGVKIRVIDTPGLK 748 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a---------~Vss~------~gtTt~~~----~~~~evdGrkVtLIDTPGL~ 748 (1334)
.-.+|+|+|..++|||||++.|+..... ...++ .+.|.... .....+.+.++.||||||..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3479999999999999999999742110 00111 12232221 12245667899999999987
Q ss_pred CCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 749 SSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 749 ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+.. ..+..++.. .|++|+|+++...... +...+++.+. ....+.|+++||+|...
T Consensus 98 ~f~----------~~~~~al~~--aD~~llVvda~~g~~~-~t~~~~~~~~-----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFG----------GDVTRAMRA--VDGAIVVVCAVEGVMP-QTETVLRQAL-----KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccH----------HHHHHHHHh--cCEEEEEEecCCCCCc-cHHHHHHHHH-----HcCCCEEEEEEChhccc
Confidence 532 123344553 5999999998765432 4555555443 23357789999999864
No 264
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.27 E-value=5.9e-06 Score=86.23 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=70.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+++|.+|||||||+..++... +. ....++..........+++ .++.|+||+|-..... + ...+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~-~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~---~~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FP-TDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------L---RPLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CC-CCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-------c---chhh
Confidence 689999999999999999998653 22 1222322222222344455 4678999999643311 0 0112
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHH-HHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLL-RSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lL-e~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++|+|.+++....- ..++ .|+.++.......++|||-||.|+.+
T Consensus 70 ~~--~a~~~ilvyd~~~~~Sf---~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 70 YR--GADVFVLAFSLISRASY---ENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred cC--CCcEEEEEEEcCCHHHH---HHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 33 56999999999865431 1121 24443322123468999999999854
No 265
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.27 E-value=5.2e-06 Score=82.29 Aligned_cols=115 Identities=22% Similarity=0.254 Sum_probs=69.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
+|+|+|.+|||||||++++.+..-.. ...++. .+........++. .+.|+||+|.... .. +. ..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~-~~--~~~ 68 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPE--NYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF-------DS-LR--DIF 68 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTS--SSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG-------HH-HH--HHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccc--ccccccccccccccccccccccccccccccccccc-------cc-cc--ccc
Confidence 69999999999999999998764221 111222 2333444455554 5889999995311 11 11 122
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ..|++++|.+++....-..-...+..+..... ...++|||.||.|...
T Consensus 69 ~~--~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 69 YR--NSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HT--TESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cc--cccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 33 46999999998765431112233444443333 2368999999999765
No 266
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.25 E-value=8.7e-06 Score=95.65 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=70.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceec--cCCCceeeEEEEEEEe---------------------C-----CeE
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIH--AFEPGTTSVKEIVGTV---------------------D-----GVK 738 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vs--s~~gtTt~~~~~~~ev---------------------d-----Grk 738 (1334)
...++|+++|..++|||||+.+|.+....... ...+.|..+......+ + .++
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 45799999999999999999999763110000 0112232221100000 0 267
Q ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccC
Q 000717 739 IRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAA 818 (1334)
Q Consensus 739 VtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D 818 (1334)
+.|+||||.. .....+...+. .+|++|+|+++.......+....+..+. .++ .+++|+|+||+|
T Consensus 87 i~liDtPG~~----------~f~~~~~~~~~--~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~iiVVlNK~D 150 (411)
T PRK04000 87 VSFVDAPGHE----------TLMATMLSGAA--LMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKNIVIVQNKID 150 (411)
T ss_pred EEEEECCCHH----------HHHHHHHHHHh--hCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEEeec
Confidence 9999999942 12223333333 3699999999986531123445555443 222 247899999999
Q ss_pred CCCC
Q 000717 819 SAPP 822 (1334)
Q Consensus 819 ~Lep 822 (1334)
+..+
T Consensus 151 l~~~ 154 (411)
T PRK04000 151 LVSK 154 (411)
T ss_pred cccc
Confidence 8653
No 267
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.23 E-value=5.8e-06 Score=101.46 Aligned_cols=114 Identities=14% Similarity=0.056 Sum_probs=71.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcce--------ecc------CCCceeeEEEEEEEeC-----CeEEEEEeCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTS--------IHA------FEPGTTSVKEIVGTVD-----GVKIRVIDTPGLKS 749 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~--------Vss------~~gtTt~~~~~~~evd-----GrkVtLIDTPGL~d 749 (1334)
-.+|+|+|..++|||||+++|+...... +.+ ..+.|.........|. +.++.||||||..+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 4589999999999999999998532111 000 1133433333334442 46789999999865
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.. ..+.+++.. .|++|+|++++..... +....+..+. ....++|+|+||+|+.
T Consensus 87 F~----------~~v~~sl~~--aD~aILVVDas~gv~~-qt~~~~~~~~-----~~~lpiIvViNKiDl~ 139 (600)
T PRK05433 87 FS----------YEVSRSLAA--CEGALLVVDASQGVEA-QTLANVYLAL-----ENDLEIIPVLNKIDLP 139 (600)
T ss_pred HH----------HHHHHHHHH--CCEEEEEEECCCCCCH-HHHHHHHHHH-----HCCCCEEEEEECCCCC
Confidence 31 223345554 4999999999875432 3333333322 2346899999999974
No 268
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.23 E-value=8.6e-06 Score=101.89 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=74.8
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCC---------------CceeeEEEEEEEe----CCeEEEEEeCCCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE---------------PGTTSVKEIVGTV----DGVKIRVIDTPGLK 748 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~---------------gtTt~~~~~~~ev----dGrkVtLIDTPGL~ 748 (1334)
.-.+|+|+|..++|||||+.+|+........... +.|.........| .+.++.||||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3467999999999999999999854322111100 1222222222222 36789999999987
Q ss_pred CCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 749 SSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 749 ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+. ...+..++.. .|++|+|+++...... +...+++.+.+ ...+.|+++||+|...
T Consensus 99 df----------~~~~~~~l~~--~D~avlVvda~~g~~~-~t~~~~~~~~~-----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DF----------GGDVTRAMRA--VDGAIVVVDAVEGVMP-QTETVLRQALR-----ERVKPVLFINKVDRLI 153 (731)
T ss_pred Ch----------HHHHHHHHHh--cCEEEEEEECCCCCCc-cHHHHHHHHHH-----cCCCeEEEEECchhhc
Confidence 63 1234455553 4999999998876543 56667765432 2246799999999764
No 269
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.21 E-value=1.4e-06 Score=103.56 Aligned_cols=62 Identities=27% Similarity=0.398 Sum_probs=54.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
-++|-+||.|||||||+||+|.|.++..|+..++.|+..+.+.. .-.+.|.|+|||.-+.+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFS 375 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCC
Confidence 48999999999999999999999999999999999998888776 345789999999877543
No 270
>PRK12740 elongation factor G; Reviewed
Probab=98.20 E-value=9e-06 Score=100.41 Aligned_cols=109 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred EeecCCChhhhhhhhcCCCcceec-----------c------CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhH
Q 000717 695 LGKTGVGKSATINSIFGEEKTSIH-----------A------FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVN 757 (1334)
Q Consensus 695 VGkpGVGKSSLINSLLGee~a~Vs-----------s------~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ 757 (1334)
+|.+|+|||||+|.|+.....+.. + ..+.|.........+.+..+.||||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------- 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------- 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH-------
Confidence 689999999999999654322111 1 1233445555677788999999999997531
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 758 RKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 758 ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...+..++. .+|++|+|+++...... +...+++.+. ....+.|+|+||+|...
T Consensus 74 ---~~~~~~~l~--~aD~vllvvd~~~~~~~-~~~~~~~~~~-----~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 74 ---TGEVERALR--VLDGAVVVVCAVGGVEP-QTETVWRQAE-----KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred ---HHHHHHHHH--HhCeEEEEEeCCCCcCH-HHHHHHHHHH-----HcCCCEEEEEECCCCCC
Confidence 122334444 35999999998865432 3444554443 23478999999999754
No 271
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.17 E-value=1.1e-05 Score=82.07 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=66.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
++|+|+|.+|||||||++.++...-.. ...+ |.........++| ..+.++||+|.... .+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~---------------~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA---------------QF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCC-CccceEEEEEECCEEEEEEEEECCCCCch---------------hH
Confidence 479999999999999999877542111 1111 1111123345666 45788999997421 12
Q ss_pred HhhCCCCEEEEEecCCCccCCCCc-HHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLND-LPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qD-l~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.. ..|++++|.+++....- +. ...+..+..... ....|+++|-||.|+.
T Consensus 63 ~~--~~~~~ilv~d~~~~~sf-~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 63 AS--WVDAVIFVFSLENEASF-QTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred Hh--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 22 36999999998875431 12 223333332211 1346899999998864
No 272
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.16 E-value=8.9e-06 Score=86.81 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=64.1
Q ss_pred EeecCCChhhhhhhhcCCCcceeccCCCce-eeEEEEEEEeC--CeEEEEEeCCCCCCCCcchhhHHHHHHHH-HHHHhh
Q 000717 695 LGKTGVGKSATINSIFGEEKTSIHAFEPGT-TSVKEIVGTVD--GVKIRVIDTPGLKSSGVEQGVNRKVLASI-KKFTKK 770 (1334)
Q Consensus 695 VGkpGVGKSSLINSLLGee~a~Vss~~gtT-t~~~~~~~evd--GrkVtLIDTPGL~ds~i~d~~~ekIlreI-kkaIkk 770 (1334)
+|.+|||||||+++++... +. ....++. .+.......++ ..++.|+||||-... ..+ ..++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~-~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~-----------~~l~~~~~~- 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FE-KKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKF-----------GGLRDGYYI- 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhh-----------hhhhHHHhc-
Confidence 6999999999999998643 21 1111221 12223333443 357899999996422 111 12333
Q ss_pred CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 771 CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
+.|++|+|.+++....- ..+-.|+.++.......|+|+|.||+|+.
T Consensus 67 -~ad~~ilV~D~t~~~S~---~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 -QGQCAIIMFDVTARVTY---KNVPNWHRDLVRVCENIPIVLCGNKVDVK 112 (200)
T ss_pred -CCCEEEEEEECCChHHH---HHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 46999999999865421 12223333332222346999999999974
No 273
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.13 E-value=1.1e-05 Score=88.78 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=68.1
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEE-eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT-VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~e-vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
||+++|+.++||||..+.|+..-.+.-...-+.|.+....... .....+.++|.||-....-.. -..... ..++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--~~~~~~---~if~ 75 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--FNSQRE---EIFS 75 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT--HTCCHH---HHHC
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc--ccccHH---HHHh
Confidence 6999999999999999999987543322333455555544444 345699999999976542110 000011 1233
Q ss_pred hCCCCEEEEEecCCCccCCCCcHH-HHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLP-LLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~-lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..++++||+|+...... .++. +...+....-....-++-|++.|+|.+.+
T Consensus 76 --~v~~LIyV~D~qs~~~~-~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 76 --NVGVLIYVFDAQSDDYD-EDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp --TESEEEEEEETT-STCH-HHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred --ccCEEEEEEEcccccHH-HHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 35899999998833221 2332 22333333333344578888999998865
No 274
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.00 E-value=1.9e-05 Score=84.16 Aligned_cols=117 Identities=17% Similarity=0.299 Sum_probs=66.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe---CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV---DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev---dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
-.|+|+|++|+||++|+..|.......+. |.-.......+ .+..+.|||+||-.+-+ ...+..+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-----tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr------~~~~~~~~- 71 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTV-----TSMENNIAYNVNNSKGKKLRLVDIPGHPRLR------SKLLDELK- 71 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B--------SSEEEECCGSSTCGTCECEEEETT-HCCC------HHHHHHHH-
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCee-----ccccCCceEEeecCCCCEEEEEECCCcHHHH------HHHHHhhh-
Confidence 47999999999999999999876322211 11111111122 45689999999975432 22333321
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc----cCCceEEEEEeccCCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT----QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~----ea~K~tIIVLTK~D~Lep 822 (1334)
++. .+-.|+||+|......+ -..+++.+..++-. ....|++|+.||.|+...
T Consensus 72 ~~~--~~k~IIfvvDSs~~~~~--~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 72 YLS--NAKGIIFVVDSSTDQKE--LRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp HHG--GEEEEEEEEETTTHHHH--HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred chh--hCCEEEEEEeCccchhh--HHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 233 34689999998754321 24456666555532 234689999999998753
No 275
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.99 E-value=4.6e-05 Score=80.85 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=64.8
Q ss_pred ccEEEEEeecCCChhhhhh-hhcCCC----cceeccCCCcee--eEEEE--------EEEeCC--eEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATIN-SIFGEE----KTSIHAFEPGTT--SVKEI--------VGTVDG--VKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLIN-SLLGee----~a~Vss~~gtTt--~~~~~--------~~evdG--rkVtLIDTPGL~ds~ 751 (1334)
.++|+++|.+|||||||++ .+.+.. .+. ....|+.. +.... ...++| .++.|+||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~-~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLL-ATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCc-cccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh-
Confidence 4799999999999999996 444321 111 11223221 11110 113344 36789999997431
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcH--HHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDL--PLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl--~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. +. .++. .+|++|+|.+++....- ... ..++.+.... ...|+|+|.||.|+..
T Consensus 80 ~---------~~--~~~~--~ad~iilv~d~t~~~Sf-~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 D---------RR--FAYG--RSDVVLLCFSIASPNSL-RNVKTMWYPEIRHFC---PRVPVILVGCKLDLRY 134 (195)
T ss_pred h---------hc--ccCC--CCCEEEEEEECCChhHH-HHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 0 11 1222 57999999998865421 111 1233333221 2468999999999753
No 276
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.96 E-value=9.5e-05 Score=88.16 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=74.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcc------------------------eecc------CCCceeeEEEEEEEeCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKT------------------------SIHA------FEPGTTSVKEIVGTVDG 736 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a------------------------~Vss------~~gtTt~~~~~~~evdG 736 (1334)
...++|+++|..++|||||+-+|+-.... .+.+ ..+.|-+.....+.+.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 35689999999999999999888621100 0001 12455566666677788
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCC------CCcHHHHHHHHHHhcccCCceE
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRD------LNDLPLLRSITNALGTQIWRSA 810 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e------~qDl~lLe~IqeiFG~ea~K~t 810 (1334)
+.++||||||.. ..+..+...+. .+|++|+|+++.....+ .+-++.+..+ ..+| -+++
T Consensus 85 ~~i~liDtPGh~----------df~~~~~~g~~--~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~-~~~g---i~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHR----------DFIKNMITGTS--QADCAVLIIDSTTGGFEAGISKDGQTREHALLA-FTLG---VKQM 148 (447)
T ss_pred EEEEEEECCCHH----------HHHHHHHhhhh--hccEEEEEEEcccCceecccCCCchHHHHHHHH-HHcC---CCcE
Confidence 999999999953 22333434444 46999999998864211 1122222221 1222 2467
Q ss_pred EEEEeccCCC
Q 000717 811 IVTLTHAASA 820 (1334)
Q Consensus 811 IIVLTK~D~L 820 (1334)
||++||.|..
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8899999975
No 277
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.95 E-value=5.4e-05 Score=89.93 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=75.2
Q ss_pred CccEEEEEeecCCChhhhhhhhc------CCCcceecc--CCC---------ceeeEEEEEEEe----------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIF------GEEKTSIHA--FEP---------GTTSVKEIVGTV---------------- 734 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL------Gee~a~Vss--~~g---------tTt~~~~~~~ev---------------- 734 (1334)
.+-.|+++|.+|+||||++..|. |.....++. +.+ ....-..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35679999999999999999886 554444432 110 001000111100
Q ss_pred --CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEE
Q 000717 735 --DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIV 812 (1334)
Q Consensus 735 --dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tII 812 (1334)
.+..+.||||||.... ....+.++.+....+.||.+++|+++..... ....++.+.+. ....-+
T Consensus 179 ~~~~~DvViIDTaGr~~~------d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~---a~~~a~~F~~~-----~~~~g~ 244 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQ------EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQA---AEAQAKAFKDS-----VDVGSV 244 (429)
T ss_pred HhCCCCEEEEECCCCCcc------hHHHHHHHHHHhhhcCCcEEEEEeccccChh---HHHHHHHHHhc-----cCCcEE
Confidence 2568899999995432 2345666766666667899999999765432 34455554432 246778
Q ss_pred EEeccCCCCC
Q 000717 813 TLTHAASAPP 822 (1334)
Q Consensus 813 VLTK~D~Lep 822 (1334)
++||.|....
T Consensus 245 IlTKlD~~ar 254 (429)
T TIGR01425 245 IITKLDGHAK 254 (429)
T ss_pred EEECccCCCC
Confidence 8999998654
No 278
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.95 E-value=6.7e-05 Score=79.20 Aligned_cols=114 Identities=18% Similarity=0.249 Sum_probs=79.5
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..+||+++|..|+||||+++.++++....+ ..|...+.....+.+.++.++|.-|=.. ..+.-+.+
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i----~pt~gf~Iktl~~~~~~L~iwDvGGq~~----------lr~~W~nY 80 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI----SPTLGFQIKTLEYKGYTLNIWDVGGQKT----------LRSYWKNY 80 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc----CCccceeeEEEEecceEEEEEEcCCcch----------hHHHHHHh
Confidence 369999999999999999999999874333 3455667777888899999999888321 11122334
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc--cCCceEEEEEeccCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT--QIWRSAIVTLTHAASA 820 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~--ea~K~tIIVLTK~D~L 820 (1334)
.. ..|+++||+|.....+- ......+++.+.. -++.+.+|+.||-|..
T Consensus 81 fe--stdglIwvvDssD~~r~---~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 81 FE--STDGLIWVVDSSDRMRM---QECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred hh--ccCeEEEEEECchHHHH---HHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 44 35999999998654432 2234444444432 2557999999999975
No 279
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=4.5e-05 Score=88.69 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=63.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe------------C------CeEEEEEeCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV------------D------GVKIRVIDTPGLKSS 750 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev------------d------GrkVtLIDTPGL~ds 750 (1334)
.+++-|+|.||||||||+|+|+... +...++|.+|-+.......+ . -.++.|||.+||-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4789999999999999999999887 77788888887654433322 1 125789999999875
Q ss_pred Ccc-hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCc
Q 000717 751 GVE-QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQ 785 (1334)
Q Consensus 751 ~i~-d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~ 785 (1334)
... ...-.+.+..|+ ..|++++|+|....
T Consensus 81 As~GeGLGNkFL~~IR------evdaI~hVVr~f~d 110 (372)
T COG0012 81 ASKGEGLGNKFLDNIR------EVDAIIHVVRCFGD 110 (372)
T ss_pred cccCCCcchHHHHhhh------hcCeEEEEEEecCC
Confidence 322 223334444443 35999999987643
No 280
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=0.00014 Score=78.53 Aligned_cols=117 Identities=17% Similarity=0.228 Sum_probs=75.3
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
+.-++|+|+|-+|||||-|+-.+.+..-.. + ...|- +......+++|. ++.|+||+|=. .++
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e-~--~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQE-----------RFr 72 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTE-S--YISTIGVDFKIRTVELDGKTIKLQIWDTAGQE-----------RFR 72 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcch-h--hcceeeeEEEEEEeeecceEEEEEeeeccccH-----------HHh
Confidence 456899999999999999999887753211 1 12222 334445566665 68999999932 122
Q ss_pred HH-HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCC-ceEEEEEeccCCCCC
Q 000717 763 SI-KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIW-RSAIVTLTHAASAPP 822 (1334)
Q Consensus 763 eI-kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~-K~tIIVLTK~D~Lep 822 (1334)
.| ..+-+ ++|.||+|-|++....= -.+-+||.++-..... .+.++|-||+|+.+.
T Consensus 73 tit~syYR--~ahGii~vyDiT~~~SF---~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 73 TITSSYYR--GAHGIIFVYDITKQESF---NNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred hhhHhhcc--CCCeEEEEEEcccHHHh---hhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 22 22222 58999999999875431 2344555554433332 488999999998654
No 281
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00018 Score=84.61 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=87.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCC---------------------Cccee----c-----cCCCceeeEEEEEEEeCCe
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGE---------------------EKTSI----H-----AFEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGe---------------------e~a~V----s-----s~~gtTt~~~~~~~evdGr 737 (1334)
..++++++|...+|||||+-.||=+ ..+.. . ...+.|.+.....++.+-+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4689999999999999999888621 10100 0 1125566666667777778
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCcc------CCCCcHHHHHHHHHHhcccCCceEE
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQT------RDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t------~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
.++|||+||.++. +...|.. .+ .+|+-++|+++.... ...|.+.-+ .|...+| -++.|
T Consensus 86 ~~tIiDaPGHrdF---------vknmItG-as--qAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlG---i~~lI 149 (428)
T COG5256 86 NFTIIDAPGHRDF---------VKNMITG-AS--QADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLG---IKQLI 149 (428)
T ss_pred eEEEeeCCchHHH---------HHHhhcc-hh--hccEEEEEEECCCCccccccccCCchhHHH-HHHHhcC---CceEE
Confidence 8999999996542 1222211 12 469999999887652 222333322 3455566 47899
Q ss_pred EEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhc
Q 000717 812 VTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAV 851 (1334)
Q Consensus 812 IVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcg 851 (1334)
|++||.|...- +-+.|. +....++.+++.|+
T Consensus 150 VavNKMD~v~w--------de~rf~-ei~~~v~~l~k~~G 180 (428)
T COG5256 150 VAVNKMDLVSW--------DEERFE-EIVSEVSKLLKMVG 180 (428)
T ss_pred EEEEccccccc--------CHHHHH-HHHHHHHHHHHHcC
Confidence 99999998752 123332 22234555777776
No 282
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.78 E-value=0.00018 Score=86.30 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=70.5
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceecc--CCCceeeE----------------EE---E--------EE-----
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHA--FEPGTTSV----------------KE---I--------VG----- 732 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss--~~gtTt~~----------------~~---~--------~~----- 732 (1334)
...++|.++|.-..|||||+.+|.|........ ..+.|-+. .. . ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 357999999999999999999999853221100 00111000 00 0 00
Q ss_pred -EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE
Q 000717 733 -TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 733 -evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
..-.+++.||||||. +..++.+...+. .+|++|+|+++.......+..+.+.. .+.+| .+++|
T Consensus 112 ~~~~~~~i~~IDtPGH----------~~fi~~m~~g~~--~~D~alLVVda~~g~~~~qT~ehl~i-~~~lg---i~~iI 175 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGH----------DILMATMLNGAA--VMDAALLLIAANESCPQPQTSEHLAA-VEIMK---LKHII 175 (460)
T ss_pred cccccceEeeeeCCCH----------HHHHHHHHHHHh--hCCEEEEEEECCCCccchhhHHHHHH-HHHcC---CCcEE
Confidence 001357899999994 233344444444 46999999999864211133334432 23344 25889
Q ss_pred EEEeccCCCC
Q 000717 812 VTLTHAASAP 821 (1334)
Q Consensus 812 IVLTK~D~Le 821 (1334)
||+||+|+..
T Consensus 176 VvlNKiDlv~ 185 (460)
T PTZ00327 176 ILQNKIDLVK 185 (460)
T ss_pred EEEecccccC
Confidence 9999999864
No 283
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.75 E-value=6.6e-05 Score=87.69 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=62.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-----------------eEEEEEeCCCCCCCCc
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-----------------VKIRVIDTPGLKSSGV 752 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-----------------rkVtLIDTPGL~ds~i 752 (1334)
+++.|+|.||+|||||+|+|.+.....+..++.+|.........+.+ ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 68899999999999999999998754677777777766555544433 2589999999986522
Q ss_pred c-hhhHHHHHHHHHHHHhhCCCCEEEEEecCC
Q 000717 753 E-QGVNRKVLASIKKFTKKCAPDIVLYVDRLD 783 (1334)
Q Consensus 753 ~-d~~~ekIlreIkkaIkkcgpDVVLLVIDad 783 (1334)
. ...... +...++.| |++++|+|..
T Consensus 83 ~g~Glgn~----fL~~ir~~--d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQ----FLANIREV--DIIQHVVRCF 108 (368)
T ss_pred cccCcchH----HHHHHHhC--CEEEEEEeCC
Confidence 1 112223 33444544 9999999875
No 284
>PRK13768 GTPase; Provisional
Probab=97.70 E-value=0.00012 Score=81.06 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=48.0
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
..+.||||||..+.... ....+.+.+.+.....+++++|+|+...... .+.....++....-....++.|+|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~----~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~-~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF----RESGRKLVERLSGSSKSVVVFLIDAVLAKTP-SDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhh----hHHHHHHHHHHHhcCCeEEEEEechHHhCCH-HHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 36899999997654211 1122233344443236899999998764432 344444333211111346899999999
Q ss_pred cCCCCC
Q 000717 817 AASAPP 822 (1334)
Q Consensus 817 ~D~Lep 822 (1334)
+|.+..
T Consensus 172 ~D~~~~ 177 (253)
T PRK13768 172 ADLLSE 177 (253)
T ss_pred HhhcCc
Confidence 999865
No 285
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.67 E-value=0.00027 Score=81.65 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhc
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL 710 (1334)
..++.|.|+|.||+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 457899999999999999999864
No 286
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0002 Score=78.03 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=79.1
Q ss_pred cccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 685 DLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 685 ~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
+++.-++|+++|-+|||||-|+......+ +...+...--.+.......++++ +..|+||+|-.+. +
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnE-F~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy-----------r 77 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNE-FSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY-----------R 77 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccc-cCcccccceeEEEEeeceeecCcEEEEeeecccchhhh-----------c
Confidence 34566899999999999999998877543 32222111111333444556665 5689999995322 2
Q ss_pred HHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCC
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Le 821 (1334)
.+-.+.- .++..+|+|-|+++...- ..+.+||.++..+. ..-.+|+|-||+|+..
T Consensus 78 AitSaYY-rgAvGAllVYDITr~~Tf---env~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 78 AITSAYY-RGAVGALLVYDITRRQTF---ENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred cccchhh-cccceeEEEEechhHHHH---HHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 2222222 257889999999876532 36788888877654 4557888899999865
No 287
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00025 Score=82.37 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=73.5
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCC-CceeeEEE-EEEE----eCC------------------------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFE-PGTTSVKE-IVGT----VDG------------------------ 736 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~-gtTt~~~~-~~~e----vdG------------------------ 736 (1334)
....-|+++|+-..||||+||.|+..+-......+ |+|...+. ..+. +.|
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 34567999999999999999999987643222111 22222111 1110 000
Q ss_pred -----------eEEEEEeCCCCCCCCcchhhHHHHHHHHHH-HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc
Q 000717 737 -----------VKIRVIDTPGLKSSGVEQGVNRKVLASIKK-FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT 804 (1334)
Q Consensus 737 -----------rkVtLIDTPGL~ds~i~d~~~ekIlreIkk-aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ 804 (1334)
..|+||||||+.......-..-+-+..+.+ ++. ++|.|+++.|+........-.+++..+ .|+
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDIsdEf~~vi~aL---kG~ 210 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFKRVIDAL---KGH 210 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhccccHHHHHHHHHh---hCC
Confidence 247999999998642110001111222222 334 459999998887654431123344444 343
Q ss_pred cCCceEEEEEeccCCCCC
Q 000717 805 QIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 805 ea~K~tIIVLTK~D~Lep 822 (1334)
+ ..+=||+||+|.+++
T Consensus 211 E--dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 E--DKIRVVLNKADQVDT 226 (532)
T ss_pred c--ceeEEEeccccccCH
Confidence 3 567789999998865
No 288
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.64 E-value=0.00018 Score=77.29 Aligned_cols=118 Identities=20% Similarity=0.236 Sum_probs=74.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
..+|+++|.+|||||+|....++..- +..+.|+.-+.......+++. .+.|+||+|..... .++. .
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~--------~~~~--~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS--------AMRD--L 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCcccCh--------HHHH--H
Confidence 57899999999999999988887532 223444444544555555554 56799999932221 1111 2
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++. ..|.+++|..++....=..-..+.+.|.+..+. .+.|+|+|-||+|+..
T Consensus 71 ~~~--~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 71 YIR--NGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLER 122 (196)
T ss_pred hhc--cCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchh
Confidence 333 459999998888654311123444555433342 3369999999999865
No 289
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.63 E-value=0.00057 Score=73.30 Aligned_cols=118 Identities=12% Similarity=0.129 Sum_probs=73.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceec-----cCC----CceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIH-----AFE----PGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVN 757 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vs-----s~~----gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ 757 (1334)
...+|+|+|.-++||+|++.+|.-.....+. ... ++|.........+++ ..+.|++|||-.+.
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF------- 81 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERF------- 81 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHH-------
Confidence 3579999999999999999999877543331 111 233333344455555 78999999995432
Q ss_pred HHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 758 RKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 758 ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+.++..+.+ +....+++++.++.... ....+++.+.. ...-|.+|..||-|+...
T Consensus 82 ----~fm~~~l~~-ga~gaivlVDss~~~~~-~a~~ii~f~~~----~~~ip~vVa~NK~DL~~a 136 (187)
T COG2229 82 ----KFMWEILSR-GAVGAIVLVDSSRPITF-HAEEIIDFLTS----RNPIPVVVAINKQDLFDA 136 (187)
T ss_pred ----HHHHHHHhC-CcceEEEEEecCCCcch-HHHHHHHHHhh----ccCCCEEEEeeccccCCC
Confidence 122222332 45555566555544321 34555555543 333799999999998654
No 290
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.00045 Score=75.21 Aligned_cols=119 Identities=16% Similarity=0.182 Sum_probs=75.9
Q ss_pred ccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHH
Q 000717 686 LNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVL 761 (1334)
Q Consensus 686 l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIl 761 (1334)
.+.-++|+++|.+|||||.++-.+... .+..+. ..|- +......+.+|+ ++.++||.|=... .
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~--~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf----------~ 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSF--ISTIGIDFKIKTIELDGKKIKLQIWDTAGQERF----------R 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhc-cCcCCc--cceEEEEEEEEEEEeCCeEEEEEEEEcccchhH----------H
Confidence 456799999999999999999887754 232221 2222 333444556665 5689999994321 1
Q ss_pred HHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 762 ASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 762 reIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+..+.. +++.+++|.+++....-......++.|.+.- ...-+.|+|=||+|+..
T Consensus 76 ti~~sYyr--gA~gi~LvyDitne~Sfeni~~W~~~I~e~a--~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 76 TITTAYYR--GAMGILLVYDITNEKSFENIRNWIKNIDEHA--SDDVVKILVGNKCDLEE 131 (207)
T ss_pred HHHHHHHh--hcCeeEEEEEccchHHHHHHHHHHHHHHhhC--CCCCcEEEeeccccccc
Confidence 22333444 5789999999886433223445566565432 22568999999999865
No 291
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.60 E-value=6.5e-05 Score=83.63 Aligned_cols=107 Identities=21% Similarity=0.308 Sum_probs=76.5
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch-hhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ-GVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d-~~~ekIlreIkk 766 (1334)
..-|++++|-|.||||||+..|.... .....+..+|.+|+.....++|..|.++|.||+....... ..-+ +
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGR-------Q 132 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGR-------Q 132 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCc-------e
Confidence 35799999999999999999999863 3445566888899999999999999999999997652111 0011 1
Q ss_pred HHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc
Q 000717 767 FTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ 805 (1334)
Q Consensus 767 aIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e 805 (1334)
.+.-. .+|+||.|+|++.... .+.+|+.-.+..|-+
T Consensus 133 viavArtaDlilMvLDatk~e~---qr~~le~ELe~vGiR 169 (364)
T KOG1486|consen 133 VIAVARTADLILMVLDATKSED---QREILEKELEAVGIR 169 (364)
T ss_pred EEEEeecccEEEEEecCCcchh---HHHHHHHHHHHhcee
Confidence 12211 3799999999886542 355666655555543
No 292
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0002 Score=73.11 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=65.4
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK 769 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk 769 (1334)
.||++||+.|+||+||.|+|-|....- .-|. - .+++.+ ..|||||-.-. .+.....+.- .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-----kKTQ---A--ve~~d~--~~IDTPGEy~~------~~~~Y~aL~t--t 61 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-----KKTQ---A--VEFNDK--GDIDTPGEYFE------HPRWYHALIT--T 61 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-----cccc---e--eeccCc--cccCCchhhhh------hhHHHHHHHH--H
Confidence 379999999999999999999975321 1121 1 233332 47999996532 1233344422 2
Q ss_pred hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 770 KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 770 kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+.++++++|..++...... -- .|-.-..+++|-|+||+|+.++
T Consensus 62 ~~dadvi~~v~~and~~s~f-----~p----~f~~~~~k~vIgvVTK~DLaed 105 (148)
T COG4917 62 LQDADVIIYVHAANDPESRF-----PP----GFLDIGVKKVIGVVTKADLAED 105 (148)
T ss_pred hhccceeeeeecccCccccC-----Cc----ccccccccceEEEEecccccch
Confidence 34679999999887653221 01 1222233679999999999754
No 293
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00024 Score=84.05 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=70.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCC------Ccceecc--CC-Cc-----e----eeEEEEEEE--------------eC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGE------EKTSIHA--FE-PG-----T----TSVKEIVGT--------------VD 735 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGe------e~a~Vss--~~-gt-----T----t~~~~~~~e--------------vd 735 (1334)
.+..|+|+|++|+||||++..|... ....+.. .. +. + ..+...... ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 3568999999999999999998631 1211111 10 00 0 000000000 01
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
+..+.||||||-.... ...+.++.+.+....||.+++|++++.... + +..+.+.|.. ....=++||
T Consensus 320 ~~DvVLIDTaGRs~kd------~~lm~EL~~~lk~~~PdevlLVLsATtk~~---d---~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 320 RVDYILIDTAGKNYRA------SETVEEMIETMGQVEPDYICLTLSASMKSK---D---MIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred CCCEEEEeCccccCcC------HHHHHHHHHHHhhcCCCeEEEEECCccChH---H---HHHHHHHhcC--CCCCEEEEE
Confidence 3478999999975432 234566667776666888899987764332 2 2233344543 234557789
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|.|....
T Consensus 386 KLDET~k 392 (436)
T PRK11889 386 KFDETAS 392 (436)
T ss_pred cccCCCC
Confidence 9997654
No 294
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.50 E-value=0.00013 Score=83.75 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=77.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEE-eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGT-VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~e-vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+...|.|+|.||+|||||||+|.+.....- +.-..|-+....... ..|+.+.+.||-||... ..... -..++.+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~-drLFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP~~L-vaAF~ATLe 253 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPN-DRLFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LPIQL-VAAFQATLE 253 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCcc-chhheeccchhhhccCCCCcEEEEeechhhhhh-CcHHH-HHHHHHHHH
Confidence 456799999999999999999996432221 111233333322222 35788999999999743 11111 122333333
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-c--CCceEEEEEeccCCCC
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-Q--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-e--a~K~tIIVLTK~D~Le 821 (1334)
-+. ..|++|+|.|++.+..+.+...++..+.. +|- . ...+.|=|=||.|..+
T Consensus 254 eVa--eadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 254 EVA--EADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHh--hcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhcccccccc
Confidence 333 35999999999998876555556666653 332 1 2235566677777543
No 295
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00036 Score=85.84 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=68.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEE---------------------------------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK--------------------------------------- 728 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~--------------------------------------- 728 (1334)
...+|++.|+++.||||+||+++-+.....+. ++|+.|-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~--gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGI--GHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccc--cccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 56899999999999999999998654332111 1111110
Q ss_pred -----EEEEEeC-C------eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHH
Q 000717 729 -----EIVGTVD-G------VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLR 796 (1334)
Q Consensus 729 -----~~~~evd-G------rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe 796 (1334)
...+.|. + -.+.+||.||+.-....+ ..|.++.. .+||++||..+..... ..++.++.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~t-------swid~~cl--daDVfVlV~NaEntlt-~sek~Ff~ 255 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELT-------SWIDSFCL--DADVFVLVVNAENTLT-LSEKQFFH 255 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhh-------HHHHHHhh--cCCeEEEEecCccHhH-HHHHHHHH
Confidence 0111111 1 147899999996442211 11222222 4799999988765322 13455554
Q ss_pred HHHHHhcccCCceEEEEEeccCCCCC
Q 000717 797 SITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 797 ~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
... ....++.|+.||||....
T Consensus 256 ~vs-----~~KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 256 KVS-----EEKPNIFILNNKWDASAS 276 (749)
T ss_pred Hhh-----ccCCcEEEEechhhhhcc
Confidence 443 224577788899998653
No 296
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00071 Score=79.46 Aligned_cols=128 Identities=19% Similarity=0.143 Sum_probs=65.5
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCC--------cceec-cCCC-----c--------eeeEEEEE---------EEeC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEE--------KTSIH-AFEP-----G--------TTSVKEIV---------GTVD 735 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee--------~a~Vs-s~~g-----t--------Tt~~~~~~---------~evd 735 (1334)
...-.|+|+|++||||||++..|...- ...+. +... . -....... ..+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 345689999999999999999886431 11111 0000 0 00000000 1124
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccC---CceEEE
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQI---WRSAIV 812 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea---~K~tII 812 (1334)
+..+.||||||+.... ....+.+........+.-.++|++++..... -..+++.+....+... ....=+
T Consensus 215 ~~DlVLIDTaG~~~~d------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~--l~evi~~f~~~~~~p~~~~~~~~~~ 286 (374)
T PRK14722 215 NKHMVLIDTIGMSQRD------RTVSDQIAMLHGADTPVQRLLLLNATSHGDT--LNEVVQAYRSAAGQPKAALPDLAGC 286 (374)
T ss_pred CCCEEEEcCCCCCccc------HHHHHHHHHHhccCCCCeEEEEecCccChHH--HHHHHHHHHHhhcccccccCCCCEE
Confidence 5678999999986432 1223333222122234566788887754431 1223444443322111 113457
Q ss_pred EEeccCCCCC
Q 000717 813 TLTHAASAPP 822 (1334)
Q Consensus 813 VLTK~D~Lep 822 (1334)
+|||.|....
T Consensus 287 I~TKlDEt~~ 296 (374)
T PRK14722 287 ILTKLDEASN 296 (374)
T ss_pred EEeccccCCC
Confidence 7899997654
No 297
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.43 E-value=0.0017 Score=78.07 Aligned_cols=129 Identities=18% Similarity=0.282 Sum_probs=84.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccC-----------------------------------------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAF----------------------------------------------- 720 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~----------------------------------------------- 720 (1334)
.-.||+|+|--.+||+|.+..|.....+..++.
T Consensus 307 hLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~R 386 (980)
T KOG0447|consen 307 HLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELR 386 (980)
T ss_pred cCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHH
Confidence 457999999999999999998864333222111
Q ss_pred ------CCceeeEEEEEEEeCC---eEEEEEeCCCCCCC---CcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCC
Q 000717 721 ------EPGTTSVKEIVGTVDG---VKIRVIDTPGLKSS---GVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRD 788 (1334)
Q Consensus 721 ------~gtTt~~~~~~~evdG---rkVtLIDTPGL~ds---~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e 788 (1334)
.++|.....+..++.| .++.+||.||+..+ .+.....+.+++..+.++. .|++||+|+.-+.-..
T Consensus 387 Mr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~--NPNAIILCIQDGSVDA- 463 (980)
T KOG0447|consen 387 MRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ--NPNAIILCIQDGSVDA- 463 (980)
T ss_pred HHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhc--CCCeEEEEeccCCcch-
Confidence 1333333344444544 36899999999876 2333334456666666666 5799999986544322
Q ss_pred CCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 789 LNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 789 ~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++..+.-+...+. ..++.+|+|+||.|+.+.
T Consensus 464 --ERSnVTDLVsq~D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 --ERSIVTDLVSQMD-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred --hhhhHHHHHHhcC-CCCCeeEEEEeecchhhh
Confidence 3444544444444 456899999999998865
No 298
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00097 Score=80.64 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=79.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEe-CCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTV-DGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ev-dGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
+.+.-|-|+|.---||+||+.+|-+...+.. ..++.|..+--+.... .|+.++|.||||-- .+..++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa-----------AF~aMR 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLPSGKSITFLDTPGHA-----------AFSAMR 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecCCCCEEEEecCCcHH-----------HHHHHH
Confidence 4677899999999999999999988765442 3346666554443333 68999999999942 122222
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
.- --.-.|++++|+-++..... | .++.|+ +.+.+..|+||.+||+|..
T Consensus 219 aR-GA~vtDIvVLVVAadDGVmp-Q---T~EaIk--hAk~A~VpiVvAinKiDkp 266 (683)
T KOG1145|consen 219 AR-GANVTDIVVLVVAADDGVMP-Q---TLEAIK--HAKSANVPIVVAINKIDKP 266 (683)
T ss_pred hc-cCccccEEEEEEEccCCccH-h---HHHHHH--HHHhcCCCEEEEEeccCCC
Confidence 10 00125899999998887653 3 444444 3446778999999999954
No 299
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.40 E-value=0.00054 Score=72.40 Aligned_cols=114 Identities=22% Similarity=0.308 Sum_probs=69.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
-.++|+|+|.+|||||||+-+..... ..+..++|- +.......++|. ++.|+||+|-.+.+ .
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~---fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR-----------t 75 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNT---FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR-----------T 75 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcc---cCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh-----------c
Confidence 45899999999999999998877542 233344444 344555666665 67899999954321 1
Q ss_pred HH-HHHhhCCCCEEEEEecCCCccCCCCcHH-HHHHHHHHhcccCCceEEEEEeccCC
Q 000717 764 IK-KFTKKCAPDIVLYVDRLDSQTRDLNDLP-LLRSITNALGTQIWRSAIVTLTHAAS 819 (1334)
Q Consensus 764 Ik-kaIkkcgpDVVLLVIDad~~t~e~qDl~-lLe~IqeiFG~ea~K~tIIVLTK~D~ 819 (1334)
+. .+.. ++..+|+|-|++....- ..+. .++.|. .+......--|+|-||.|.
T Consensus 76 LTpSyyR--gaqGiIlVYDVT~Rdtf-~kLd~W~~Eld-~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 76 LTPSYYR--GAQGIILVYDVTSRDTF-VKLDIWLKELD-LYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred cCHhHhc--cCceeEEEEEccchhhH-HhHHHHHHHHH-hhcCCccHhHhhhcccccc
Confidence 11 1111 56788888888865321 1111 222222 3443444456788899995
No 300
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.39 E-value=0.00039 Score=80.29 Aligned_cols=91 Identities=25% Similarity=0.288 Sum_probs=63.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC--------------C---eEEEEEeCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD--------------G---VKIRVIDTPGLKS 749 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd--------------G---rkVtLIDTPGL~d 749 (1334)
...++|-|||.||||||||+|+|...... ..++|.+|-+.......+. + ..++|+|++||..
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 45789999999999999999999987655 6778888887655444321 1 2589999999987
Q ss_pred CCcc-hhhHHHHHHHHHHHHhhCCCCEEEEEecCCC
Q 000717 750 SGVE-QGVNRKVLASIKKFTKKCAPDIVLYVDRLDS 784 (1334)
Q Consensus 750 s~i~-d~~~ekIlreIkkaIkkcgpDVVLLVIDad~ 784 (1334)
.... ...-.+.+..| +. +|.++.|+|+-.
T Consensus 97 GAs~G~GLGN~FLs~i----R~--vDaifhVVr~f~ 126 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHI----RH--VDAIFHVVRAFE 126 (391)
T ss_pred CcccCcCchHHHHHhh----hh--ccceeEEEEecC
Confidence 6322 22333334333 32 488888887643
No 301
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.35 E-value=0.001 Score=69.88 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=74.8
Q ss_pred ccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-C--eEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 686 LNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-G--VKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 686 l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-G--rkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
++..++++|+|.-+|||++++..|+-.+...-....++..++.....+-+ | .+++|.||.|+.....
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~---------- 75 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ---------- 75 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh----------
Confidence 35679999999999999999988764333222223333333333333222 2 3689999999986521
Q ss_pred HHH-HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 763 SIK-KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 763 eIk-kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++. .|+. | +|++++|-+...... .+-..+|+.-.+.+-.....+++++-|++|..+|
T Consensus 76 eLprhy~q-~-aDafVLVYs~~d~eS-f~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 76 ELPRHYFQ-F-ADAFVLVYSPMDPES-FQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred hhhHhHhc-c-CceEEEEecCCCHHH-HHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 122 2333 2 689999877665432 1223344433333333344588899999998765
No 302
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0011 Score=83.05 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=82.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcc-----eec------cC------CCceeeEEEEEEEeCC-eEEEEEeCCCCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKT-----SIH------AF------EPGTTSVKEIVGTVDG-VKIRVIDTPGLKS 749 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a-----~Vs------s~------~gtTt~~~~~~~evdG-rkVtLIDTPGL~d 749 (1334)
.-.+|.|++...+|||||.-+||-.... .+. +. .+.|-........|.+ .+|.||||||.-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4578999999999999999988732111 111 10 2445566667788886 9999999999887
Q ss_pred CCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 750 SGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 750 s~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
... ++.+++.-+ |.+++|+++...... |-..+++... ....|.|+++||.|.+-.
T Consensus 89 Ft~----------EV~rslrvl--DgavvVvdaveGV~~-QTEtv~rqa~-----~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 89 FTI----------EVERSLRVL--DGAVVVVDAVEGVEP-QTETVWRQAD-----KYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cHH----------HHHHHHHhh--cceEEEEECCCCeee-cHHHHHHHHh-----hcCCCeEEEEECcccccc
Confidence 632 233444443 888888888877654 4556666655 344699999999998754
No 303
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.33 E-value=0.00023 Score=80.28 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHH---HHHHhcccCCceEEEE
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRS---ITNALGTQIWRSAIVT 813 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~---IqeiFG~ea~K~tIIV 813 (1334)
.++.||||||-...-.... .-.+ |...+....|-+|+||+|..+.+.. ...+.. -.+++= ...-|.|+|
T Consensus 116 ~~~~liDTPGQIE~FtWSA-sGsI---Ite~lass~ptvv~YvvDt~rs~~p---~tFMSNMlYAcSily-ktklp~ivv 187 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSA-SGSI---ITETLASSFPTVVVYVVDTPRSTSP---TTFMSNMLYACSILY-KTKLPFIVV 187 (366)
T ss_pred cCEEEEcCCCceEEEEecC-Cccc---hHhhHhhcCCeEEEEEecCCcCCCc---hhHHHHHHHHHHHHH-hccCCeEEE
Confidence 3589999999544311110 0112 2233444468899999987655432 112211 111211 234699999
Q ss_pred EeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhccce
Q 000717 814 LTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDL 854 (1334)
Q Consensus 814 LTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy 854 (1334)
|||+|..... -..+|+..- +.+|+.++.....|
T Consensus 188 fNK~Dv~d~~-------fa~eWm~Df-E~FqeAl~~~~~~y 220 (366)
T KOG1532|consen 188 FNKTDVSDSE-------FALEWMTDF-EAFQEALNEAESSY 220 (366)
T ss_pred EecccccccH-------HHHHHHHHH-HHHHHHHHhhccch
Confidence 9999987652 244555543 56788887655444
No 304
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.33 E-value=0.00084 Score=88.45 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=72.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceec-------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc-hhhHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIH-------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE-QGVNRKVLA 762 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vs-------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~-d~~~ekIlr 762 (1334)
=.+|||.+|+||||+|+.. |-...... ...+.|+.|..... .+-+||||+|-.-..-. .........
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~----~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFT----DEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEec----CCEEEEcCCCccccCCCcccccHHHHH
Confidence 3689999999999999876 33211110 11244666665432 34579999996543211 111222233
Q ss_pred HHHHHHhh----CCCCEEEEEecCCCccCC-CC--------cHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 763 SIKKFTKK----CAPDIVLYVDRLDSQTRD-LN--------DLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 763 eIkkaIkk----cgpDVVLLVIDad~~t~e-~q--------Dl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+.+.+++ .+++.||+++++...... .. -+.-+..+.+.|| ...|+.|||||+|+++
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg--~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG--ARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecchhhc
Confidence 34444443 357999999987754321 11 1122344455555 4469999999999883
No 305
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.32 E-value=0.001 Score=80.88 Aligned_cols=122 Identities=20% Similarity=0.193 Sum_probs=78.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCccee-ccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSI-HAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~V-ss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
..++||+|+|-.||||||||-+|+..+-... -+..+..+-. ...+.+..+..||||.--.+ ....+.++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~------~~~~l~~Eir 78 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSD------DRLCLRKEIR 78 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccc------hhHHHHHHHh
Confidence 3579999999999999999999998753221 1111111101 11223345678999983211 1233445554
Q ss_pred HHHhhCCCCEEEEEecCCC-ccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDS-QTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~-~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
++|+++++-..+. .+.+.-....|=.|...||.-...|+|+|=||.|....
T Consensus 79 ------kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~ 130 (625)
T KOG1707|consen 79 ------KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDN 130 (625)
T ss_pred ------hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccc
Confidence 3588887766665 33332344566677777887788999999999998764
No 306
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0017 Score=78.50 Aligned_cols=112 Identities=15% Similarity=0.183 Sum_probs=81.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC---CeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD---GVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd---GrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
.+.-|.++|.---|||||+-.|-+...+. ...++-|...-.++..++ ...++||||||-.. +..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA-----------Ft~- 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA-----------FTA- 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHH-----------HHH-
Confidence 35668999999999999999998775543 334567777777777764 46899999999421 111
Q ss_pred HHHHhhCC---CCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 765 KKFTKKCA---PDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 765 kkaIkkcg---pDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
+...+ .|+++||++++..... |....++.++ .+.-|+||.+||.|..+
T Consensus 71 ---mRaRGa~vtDIaILVVa~dDGv~p-QTiEAI~hak-----~a~vP~iVAiNKiDk~~ 121 (509)
T COG0532 71 ---MRARGASVTDIAILVVAADDGVMP-QTIEAINHAK-----AAGVPIVVAINKIDKPE 121 (509)
T ss_pred ---HHhcCCccccEEEEEEEccCCcch-hHHHHHHHHH-----HCCCCEEEEEecccCCC
Confidence 12222 4899999999988753 5555665554 45689999999999873
No 307
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.30 E-value=0.00068 Score=72.80 Aligned_cols=73 Identities=25% Similarity=0.304 Sum_probs=43.9
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
+..+.||||||.... ....+.++++++....++-+++|++++.... +...+....+.++ ..=+++|
T Consensus 83 ~~D~vlIDT~Gr~~~------d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~---~~~~~~~~~~~~~-----~~~lIlT 148 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR------DEELLEELKKLLEALNPDEVHLVLSATMGQE---DLEQALAFYEAFG-----IDGLILT 148 (196)
T ss_dssp TSSEEEEEE-SSSST------HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH---HHHHHHHHHHHSS-----TCEEEEE
T ss_pred CCCEEEEecCCcchh------hHHHHHHHHHHhhhcCCccceEEEecccChH---HHHHHHHHhhccc-----CceEEEE
Confidence 356899999997643 2234445555555446788899988876543 3444444443333 2345589
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|.|....
T Consensus 149 KlDet~~ 155 (196)
T PF00448_consen 149 KLDETAR 155 (196)
T ss_dssp STTSSST
T ss_pred eecCCCC
Confidence 9998654
No 308
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0017 Score=70.51 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=70.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
..+|+++|..+|||+|||+..+-..- . .++ ..|- +.....+.+.++ ++.|+||+|=.+. ...+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f-d-~~Y-qATIGiDFlskt~~l~d~~vrLQlWDTAGQERF----------rsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF-D-NTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----------RSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh-c-ccc-cceeeeEEEEEEEEEcCcEEEEEEEecccHHHH----------hhhh
Confidence 37899999999999999999875421 1 111 2222 333334455555 5789999993221 1112
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCC--ceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIW--RSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~--K~tIIVLTK~D~Lep 822 (1334)
-.++. ...++++|-|++....- ..+=+||......+.. ..+++|-||.|++.+
T Consensus 89 psY~R--ds~vaviVyDit~~~Sf---e~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 89 PSYIR--DSSVAVIVYDITDRNSF---ENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhcc--CCeEEEEEEeccccchH---HHHHHHHHHHHhccCCCceEEEEEcccccccch
Confidence 23444 45888999888865431 2344555555543333 345566799999876
No 309
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.002 Score=78.78 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhcC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
...-.|+|+|++|+||||++..|..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999988864
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=97.28 E-value=0.0004 Score=80.47 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=69.8
Q ss_pred CccEEEEEeecCCChhhhhhhhcC------CCcceec-c-CC-Cce---------eeEEEEEE-----------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG------EEKTSIH-A-FE-PGT---------TSVKEIVG----------------- 732 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG------ee~a~Vs-s-~~-gtT---------t~~~~~~~----------------- 732 (1334)
.+..|+++|.+|+||||++..|.. .....+. + +. +.. ..+..+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 467899999999999998887752 1121111 1 00 000 00000000
Q ss_pred EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEE
Q 000717 733 TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIV 812 (1334)
Q Consensus 733 evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tII 812 (1334)
...+..+.||||||..... ...+.++++......||.+++|+++..... ....++.+.+. ....-+
T Consensus 219 ~~~~~DvVLIDTaGr~~~~------~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~-----~~~~gi 284 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTD------ANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA-----VGIDGV 284 (336)
T ss_pred HhCCCCEEEEECCCccCCc------HHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc-----CCCCEE
Confidence 1124568999999986532 334555655555557899999998864321 23333333322 235678
Q ss_pred EEeccCCCCC
Q 000717 813 TLTHAASAPP 822 (1334)
Q Consensus 813 VLTK~D~Lep 822 (1334)
++||.|....
T Consensus 285 IlTKlD~~~~ 294 (336)
T PRK14974 285 ILTKVDADAK 294 (336)
T ss_pred EEeeecCCCC
Confidence 8999998654
No 311
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00089 Score=79.01 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=68.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcC------CCcceec--cCCCce----------eeEEEEEE-E-------------eC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG------EEKTSIH--AFEPGT----------TSVKEIVG-T-------------VD 735 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG------ee~a~Vs--s~~gtT----------t~~~~~~~-e-------------vd 735 (1334)
..-.|+|+|++||||||++..|.. .....++ ++.... ..+..... . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 456789999999999999988853 2222221 111100 00000000 0 02
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
+..+.||||||.... ....+.++..++..+.+|.+++|++++.. ...+.+.+. .|. .....-++||
T Consensus 285 ~~D~VLIDTAGr~~~------d~~~l~EL~~l~~~~~p~~~~LVLsag~~-----~~d~~~i~~-~f~--~l~i~glI~T 350 (407)
T PRK12726 285 CVDHILIDTVGRNYL------AEESVSEISAYTDVVHPDLTCFTFSSGMK-----SADVMTILP-KLA--EIPIDGFIIT 350 (407)
T ss_pred CCCEEEEECCCCCcc------CHHHHHHHHHHhhccCCceEEEECCCccc-----HHHHHHHHH-hcC--cCCCCEEEEE
Confidence 457899999997542 23455666666666678888888765322 223333332 343 2235567799
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|.|....
T Consensus 351 KLDET~~ 357 (407)
T PRK12726 351 KMDETTR 357 (407)
T ss_pred cccCCCC
Confidence 9997654
No 312
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.26 E-value=0.00077 Score=72.55 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=67.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
..|+|+++|-+|||||||.|.....+-..- ...|- +.......++++ .+.|+||+|=.+ ++.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~q---ykaTIgadFltKev~Vd~~~vtlQiWDTAGQER-----------Fqs 73 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQ---YKATIGADFLTKEVQVDDRSVTLQIWDTAGQER-----------FQS 73 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHH---hccccchhheeeEEEEcCeEEEEEEEecccHHH-----------hhh
Confidence 458999999999999999999987532111 01111 112222334454 567899999432 222
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHh----c--ccCCceEEEEEeccCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNAL----G--TQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiF----G--~ea~K~tIIVLTK~D~L 820 (1334)
+. ...-.++|+|++|-+++.... ..-|...++-| . ..-..|.||+-||.|.-
T Consensus 74 Lg-~aFYRgaDcCvlvydv~~~~S----fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 74 LG-VAFYRGADCCVLVYDVNNPKS----FENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred cc-cceecCCceEEEEeecCChhh----hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 32 222237899999988875432 12233222222 1 11335899999999963
No 313
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.24 E-value=0.0014 Score=68.71 Aligned_cols=114 Identities=17% Similarity=0.195 Sum_probs=67.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCcee--eEEEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTT--SVKEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt--~~~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
++.+|+|-||||||+|+-..... .+. .++ -+|. +....+..+.|. ++.|+||+|- +.++.|.
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs-~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtit 74 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFS-GSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTIT 74 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccc-cce-EEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHH
Confidence 45689999999999998765543 121 111 1222 223333444554 6788999982 3344443
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...-. ++|++++|-|.+....- -.+-+|+.++...--..+-|+|-||.|...
T Consensus 75 styyr-gthgv~vVYDVTn~ESF---~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~ 126 (198)
T KOG0079|consen 75 STYYR-GTHGVIVVYDVTNGESF---NNVKRWLEEIRNNCDSVPKVLVGNKNDDPE 126 (198)
T ss_pred HHHcc-CCceEEEEEECcchhhh---HhHHHHHHHHHhcCccccceecccCCCCcc
Confidence 33222 68999999998875432 233444444433323457899999999754
No 314
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0018 Score=70.14 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=66.8
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeE--EEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSV--KEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~--~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
..++|+|+|.+|||||||+-......-.. ..-.|... ......++. .++.|+||+|-.+-. .
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e---~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~-----------s 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHE---NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYH-----------S 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccc---ccccccccEEEEEEEEeCCcEEEEEEEEcCCccccc-----------c
Confidence 35899999999999999998776432111 11112211 112223334 577899999975421 1
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEE--EEeccCCCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIV--TLTHAASAPP 822 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tII--VLTK~D~Lep 822 (1334)
+.. +.-.++++.|+|-|++....- .++=.|++++ ......++|| |=||+|+..+
T Consensus 70 lap-MYyRgA~AAivvYDit~~~SF---~~aK~WvkeL-~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 70 LAP-MYYRGANAAIVVYDITDEESF---EKAKNWVKEL-QRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred ccc-ceecCCcEEEEEEecccHHHH---HHHHHHHHHH-HhhCCCCeEEEEecchhhhhhc
Confidence 111 112368999999999865431 2222333332 2233344554 7799999874
No 315
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0017 Score=78.56 Aligned_cols=115 Identities=17% Similarity=0.139 Sum_probs=77.5
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcce--------------eccCCCceeeEEEEEEEeCC---eEEEEEeCCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTS--------------IHAFEPGTTSVKEIVGTVDG---VKIRVIDTPGLKSSG 751 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~--------------Vss~~gtTt~~~~~~~evdG---rkVtLIDTPGL~ds~ 751 (1334)
-.++.||-.---|||||...||....++ +-...+.|...+.....+.+ ..+.+|||||--|..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 3578999999999999999997432211 11223566666666666655 678999999988875
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+ +.+.+..| +.+|+|+|+.+.... |-. + -+...| +..-.+|.|+||.|+-.
T Consensus 140 ~E----------VsRslaac--~G~lLvVDA~qGvqA-QT~--a-nf~lAf--e~~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 140 GE----------VSRSLAAC--DGALLVVDASQGVQA-QTV--A-NFYLAF--EAGLAIIPVLNKIDLPS 191 (650)
T ss_pred ce----------ehehhhhc--CceEEEEEcCcCchH-HHH--H-HHHHHH--HcCCeEEEeeeccCCCC
Confidence 32 33455555 889999999987653 122 1 122122 34468899999999754
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.21 E-value=0.0019 Score=72.74 Aligned_cols=121 Identities=24% Similarity=0.308 Sum_probs=66.5
Q ss_pred CccEEEEEeecCCChhhhhhhhc------CCCcceec-c-CCCc---------ee-eEEEEEE-----------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIF------GEEKTSIH-A-FEPG---------TT-SVKEIVG----------------- 732 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL------Gee~a~Vs-s-~~gt---------Tt-~~~~~~~----------------- 732 (1334)
.+-.|+++|++|+||||++-.|. |.....+. + +... .. .......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 35678899999999999998774 22222221 1 1000 00 0000000
Q ss_pred EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC------CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccC
Q 000717 733 TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC------APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQI 806 (1334)
Q Consensus 733 evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc------gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea 806 (1334)
...+..+.||||||..... ...+.+++++...+ .+|-+++|++++.... +...+..+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d------~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~---~~~~~~~f~~~~---- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNK------VNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN---ALEQAKVFNEAV---- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCcch------HHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH---HHHHHHHHHhhC----
Confidence 0135678999999976531 23333444333322 3788999999874321 333333333222
Q ss_pred CceEEEEEeccCCCCC
Q 000717 807 WRSAIVTLTHAASAPP 822 (1334)
Q Consensus 807 ~K~tIIVLTK~D~Lep 822 (1334)
...-+|+||.|....
T Consensus 218 -~~~g~IlTKlDe~~~ 232 (272)
T TIGR00064 218 -GLTGIILTKLDGTAK 232 (272)
T ss_pred -CCCEEEEEccCCCCC
Confidence 356788999997654
No 317
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.15 E-value=0.0026 Score=73.21 Aligned_cols=124 Identities=24% Similarity=0.273 Sum_probs=66.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCC------Ccceec-cCCC----------cee-eEEEEEE-----------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGE------EKTSIH-AFEP----------GTT-SVKEIVG----------------- 732 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGe------e~a~Vs-s~~g----------tTt-~~~~~~~----------------- 732 (1334)
.+-.|+|+|++|+||||++-.|.+. ....++ +... ..+ .+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 3567999999999999999888642 122111 1100 000 0111110
Q ss_pred EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh---hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCce
Q 000717 733 TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK---KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRS 809 (1334)
Q Consensus 733 evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk---kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~ 809 (1334)
...+..+.||||||....... .. ..++.+.+.+. .+.||-+++|++++.... +..-++...+ ....
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~--l~-~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~---~~~~a~~f~~-----~~~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTN--LM-EELKKIKRVIKKADPDAPHEVLLVLDATTGQN---ALSQAKAFHE-----AVGL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHH--HH-HHHHHHHHHHhhhcCCCCceEEEEEECCCChH---HHHHHHHHHh-----hCCC
Confidence 113457899999997654211 01 11222322222 345888999999885432 2222222221 1245
Q ss_pred EEEEEeccCCCCC
Q 000717 810 AIVTLTHAASAPP 822 (1334)
Q Consensus 810 tIIVLTK~D~Lep 822 (1334)
.-+|+||.|....
T Consensus 262 ~giIlTKlD~t~~ 274 (318)
T PRK10416 262 TGIILTKLDGTAK 274 (318)
T ss_pred CEEEEECCCCCCC
Confidence 6788999996543
No 318
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.15 E-value=0.00096 Score=79.43 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=66.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCc-----ceec----c-CC-Cc---------eeeEEEE-----------EEEeCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEK-----TSIH----A-FE-PG---------TTSVKEI-----------VGTVDG 736 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~-----a~Vs----s-~~-gt---------Tt~~~~~-----------~~evdG 736 (1334)
..-+|+|+|++|+|||||+..|.+... ..+. + +. +. ...+... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 456899999999999999998865311 0100 0 00 00 0000000 001234
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
..+.+|||+|+..+. ....+++..+.....++-+++|++++.... .+..+...|.. ....=++|||
T Consensus 270 ~d~VLIDTaGrsqrd------~~~~~~l~~l~~~~~~~~~~LVl~at~~~~------~~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 270 KHMVLIDTVGMSQRD------QMLAEQIAMLSQCGTQVKHLLLLNATSSGD------TLDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred CCEEEecCCCCCcch------HHHHHHHHHHhccCCCceEEEEEcCCCCHH------HHHHHHHHhcC--CCCCEEEEEe
Confidence 568999999987542 223444443322223566778888774332 34444445542 2344567899
Q ss_pred cCCCCC
Q 000717 817 AASAPP 822 (1334)
Q Consensus 817 ~D~Lep 822 (1334)
.|....
T Consensus 336 lDEt~~ 341 (420)
T PRK14721 336 VDEAAS 341 (420)
T ss_pred eeCCCC
Confidence 997654
No 319
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.11 E-value=0.0024 Score=76.25 Aligned_cols=114 Identities=19% Similarity=0.236 Sum_probs=76.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcce-----e-------cc---CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTS-----I-------HA---FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ 754 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~-----V-------ss---~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d 754 (1334)
.+|+|+-.---||+||+..||.+.... + .+ ..+.|--.......|++.+|.||||||--+....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE- 84 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE- 84 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch-
Confidence 479999999999999999999653211 1 01 1234444444556789999999999998877532
Q ss_pred hhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 755 GVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 755 ~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+.+ ++- .|.||+++|+...... |-+.++++-.+ ..-+-|+|+||.|...
T Consensus 85 --VERv-------l~M--VDgvlLlVDA~EGpMP-QTrFVlkKAl~-----~gL~PIVVvNKiDrp~ 134 (603)
T COG1217 85 --VERV-------LSM--VDGVLLLVDASEGPMP-QTRFVLKKALA-----LGLKPIVVINKIDRPD 134 (603)
T ss_pred --hhhh-------hhh--cceEEEEEEcccCCCC-chhhhHHHHHH-----cCCCcEEEEeCCCCCC
Confidence 1222 221 4788898898877654 55556655442 3356689999999743
No 320
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0025 Score=76.94 Aligned_cols=113 Identities=19% Similarity=0.250 Sum_probs=68.0
Q ss_pred ccccCccEEEEEeecCCChhhhhhhhcCCCcc-eeccC-CCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHH
Q 000717 684 DDLNFTLNILVLGKTGVGKSATINSIFGEEKT-SIHAF-EPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVL 761 (1334)
Q Consensus 684 e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a-~Vss~-~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIl 761 (1334)
++++.++-++|+|+||+||||||.+|..+-.- .++.. +|.|... -..++|+++.+|. +- ..++
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvs------gK~RRiTflEcp~--Dl-------~~mi 128 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVS------GKTRRITFLECPS--DL-------HQMI 128 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEee------cceeEEEEEeChH--HH-------HHHH
Confidence 44567888899999999999999999864211 11222 2222211 1246789999883 11 1111
Q ss_pred HHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 762 ASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 762 reIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+ .+ -+|+||++++..-.. ++..++.+. ++-+.-...++-|+||.|++..
T Consensus 129 -Dv---aK--IaDLVlLlIdgnfGf----EMETmEFLn-il~~HGmPrvlgV~ThlDlfk~ 178 (1077)
T COG5192 129 -DV---AK--IADLVLLLIDGNFGF----EMETMEFLN-ILISHGMPRVLGVVTHLDLFKN 178 (1077)
T ss_pred -hH---HH--hhheeEEEeccccCc----eehHHHHHH-HHhhcCCCceEEEEeecccccC
Confidence 11 11 148999999876443 233444333 2333345678889999999875
No 321
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.00 E-value=0.001 Score=78.55 Aligned_cols=119 Identities=17% Similarity=0.161 Sum_probs=68.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcc--eeccCCCceeeEEEEE---------------E--------------EeCCe
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKT--SIHAFEPGTTSVKEIV---------------G--------------TVDGV 737 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a--~Vss~~gtTt~~~~~~---------------~--------------evdGr 737 (1334)
.-.|+|||+|||||+|++-.|..+-.. .....+-.|+++.++- . ....+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 567999999999999999877532110 0000111222222110 0 01245
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEecc
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHA 817 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~ 817 (1334)
.+.||||.|.... ....+.+++.++..+...-+.+|+.++.... -|+.+.+.|+.-.. .=++|||.
T Consensus 283 d~ILVDTaGrs~~------D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~------dlkei~~~f~~~~i--~~~I~TKl 348 (407)
T COG1419 283 DVILVDTAGRSQY------DKEKIEELKELIDVSHSIEVYLVLSATTKYE------DLKEIIKQFSLFPI--DGLIFTKL 348 (407)
T ss_pred CEEEEeCCCCCcc------CHHHHHHHHHHHhccccceEEEEEecCcchH------HHHHHHHHhccCCc--ceeEEEcc
Confidence 7899999996543 2345566777777664444556666665433 35666667764332 33457999
Q ss_pred CCCC
Q 000717 818 ASAP 821 (1334)
Q Consensus 818 D~Le 821 (1334)
|...
T Consensus 349 DET~ 352 (407)
T COG1419 349 DETT 352 (407)
T ss_pred cccC
Confidence 9754
No 322
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.97 E-value=0.0023 Score=66.07 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEeecCCChhhhhhhhcCC
Q 000717 692 ILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGe 712 (1334)
++|+|..|+|||||++.|+..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 689999999999999998865
No 323
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.01 Score=62.39 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=70.9
Q ss_pred cccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee--EEEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHH
Q 000717 685 DLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKV 760 (1334)
Q Consensus 685 ~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~--~~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekI 760 (1334)
++.+-++|+++|..||||+-|+...... .+. +..+.|.. ....+.+++| .++.|+||+|-. .
T Consensus 3 dykflfkivlvgnagvgktclvrrftqg-lfp--pgqgatigvdfmiktvev~gekiklqiwdtagqe-----------r 68 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQG-LFP--PGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQE-----------R 68 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhcc-CCC--CCCCceeeeeEEEEEEEECCeEEEEEEeeccchH-----------H
Confidence 4456789999999999999999887643 222 22233432 2333455555 467899999942 2
Q ss_pred HHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 761 LASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 761 lreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++.|.+..-+ .+|++++|-|++....-.---..|+.|.+.-. ...-.|+|-||.|+.+
T Consensus 69 frsitqsyyr-sahalilvydiscqpsfdclpewlreie~yan--~kvlkilvgnk~d~~d 126 (213)
T KOG0095|consen 69 FRSITQSYYR-SAHALILVYDISCQPSFDCLPEWLREIEQYAN--NKVLKILVGNKIDLAD 126 (213)
T ss_pred HHHHHHHHhh-hcceEEEEEecccCcchhhhHHHHHHHHHHhh--cceEEEeeccccchhh
Confidence 2333332222 36999999988743321012234555543221 2234678889999754
No 324
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.95 E-value=0.00072 Score=74.66 Aligned_cols=78 Identities=13% Similarity=0.068 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc--ccCCceEEEEEe
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG--TQIWRSAIVTLT 815 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG--~ea~K~tIIVLT 815 (1334)
.+.|+||||=.+.-. -......+.+.+.+...-++++++|...... ....+..+.-.+. -+...|.|.|+|
T Consensus 92 ~y~l~DtPGQiElf~----~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~---~~~f~s~~L~s~s~~~~~~lP~vnvls 164 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT----HSDSGRKIVERLQKNGRLVVVFLVDSSFCSD---PSKFVSSLLLSLSIMLRLELPHVNVLS 164 (238)
T ss_dssp SEEEEE--SSHHHHH----HSHHHHHHHHTSSS----EEEEEE-GGG-SS---HHHHHHHHHHHHHHHHHHTSEEEEEE-
T ss_pred cEEEEeCCCCEEEEE----echhHHHHHHHHhhhcceEEEEEEecccccC---hhhHHHHHHHHHHHHhhCCCCEEEeee
Confidence 689999999432211 1123344444444323457888888765543 1222222111110 123479999999
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|+|++.+
T Consensus 165 K~Dl~~~ 171 (238)
T PF03029_consen 165 KIDLLSK 171 (238)
T ss_dssp -GGGS-H
T ss_pred ccCcccc
Confidence 9999863
No 325
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0011 Score=83.52 Aligned_cols=122 Identities=18% Similarity=0.138 Sum_probs=67.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc--------ceec-cCCC--ce---------eeEEEEE-----------EEeCCe
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK--------TSIH-AFEP--GT---------TSVKEIV-----------GTVDGV 737 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~--------a~Vs-s~~g--tT---------t~~~~~~-----------~evdGr 737 (1334)
.-.|+|||++||||||++..|.+.-. ..+. +... .. ..+.... ....++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 34689999999999999998875321 1111 0000 00 0000000 011345
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccC-CceEEEEEec
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQI-WRSAIVTLTH 816 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea-~K~tIIVLTK 816 (1334)
.++||||||..... ....+++........++-+++|++++... ..++.+.+.|.... ....=++|||
T Consensus 265 D~VLIDTAGRs~~d------~~l~eel~~l~~~~~p~e~~LVLsAt~~~------~~l~~i~~~f~~~~~~~i~glIlTK 332 (767)
T PRK14723 265 HLVLIDTVGMSQRD------RNVSEQIAMLCGVGRPVRRLLLLNAASHG------DTLNEVVHAYRHGAGEDVDGCIITK 332 (767)
T ss_pred CEEEEeCCCCCccC------HHHHHHHHHHhccCCCCeEEEEECCCCcH------HHHHHHHHHHhhcccCCCCEEEEec
Confidence 78999999976432 22444554444344578888998877432 23444444453221 1234567999
Q ss_pred cCCCCC
Q 000717 817 AASAPP 822 (1334)
Q Consensus 817 ~D~Lep 822 (1334)
.|....
T Consensus 333 LDEt~~ 338 (767)
T PRK14723 333 LDEATH 338 (767)
T ss_pred cCCCCC
Confidence 997654
No 326
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0056 Score=71.40 Aligned_cols=118 Identities=17% Similarity=0.148 Sum_probs=77.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCccee----------c----------------------cCCCceeeEEEEEEEeC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSI----------H----------------------AFEPGTTSVKEIVGTVD 735 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~V----------s----------------------s~~gtTt~~~~~~~evd 735 (1334)
..||.+-+|.---||||||-.||-..+... + ...+.|-++...++.-.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 569999999999999999999985432210 0 01255666655555556
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
.|++.|.||||-. ++....+.. .+. +|+.++++|+.....+ ..+--..|...+| -+++|+.+|
T Consensus 85 KRkFIiADTPGHe---------QYTRNMaTG-AST--adlAIlLVDAR~Gvl~--QTrRHs~I~sLLG---IrhvvvAVN 147 (431)
T COG2895 85 KRKFIIADTPGHE---------QYTRNMATG-AST--ADLAILLVDARKGVLE--QTRRHSFIASLLG---IRHVVVAVN 147 (431)
T ss_pred cceEEEecCCcHH---------HHhhhhhcc-ccc--ccEEEEEEecchhhHH--HhHHHHHHHHHhC---CcEEEEEEe
Confidence 7899999999942 222222211 222 4888899888766554 2222334555566 379999999
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|.|++.-
T Consensus 148 KmDLvdy 154 (431)
T COG2895 148 KMDLVDY 154 (431)
T ss_pred eeccccc
Confidence 9999863
No 327
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.014 Score=64.57 Aligned_cols=116 Identities=13% Similarity=0.201 Sum_probs=71.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceee--EEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTS--VKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~--~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
.-.|+++|.+++|||+|+-.|.-.. ..++-+. .....+..+...+++||-||-.+- ..+ +..
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs------~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rl------R~k----l~e 101 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGS------HRGTVTSIEPNEATYRLGSENVTLVDLPGHSRL------RRK----LLE 101 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCC------ccCeeeeeccceeeEeecCcceEEEeCCCcHHH------HHH----HHH
Confidence 3579999999999999998776431 1111111 122333444556899999995321 122 222
Q ss_pred HHhh-CCCCEEEEEecCCCccCCCCcHHHHHHHHHHhc----ccCCceEEEEEeccCCCCC
Q 000717 767 FTKK-CAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG----TQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 767 aIkk-cgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG----~ea~K~tIIVLTK~D~Lep 822 (1334)
+++. ..+-.|+||+|...+..+ -+.+.+.+..++- .....+++|+.||-|+...
T Consensus 102 ~~~~~~~akaiVFVVDSa~f~k~--vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 102 YLKHNYSAKAIVFVVDSATFLKN--VRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred HccccccceeEEEEEeccccchh--hHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 3332 235689999888776553 3445555555443 2344589999999998764
No 328
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.81 E-value=0.0059 Score=69.26 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
....|.|+|++|+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999764
No 329
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.81 E-value=0.0092 Score=72.97 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=75.5
Q ss_pred CccEEEEEeecCCChhhhhhhhc---CCCc-----------cee-----------c-----cCCCceeeEEEEEEEeCCe
Q 000717 688 FTLNILVLGKTGVGKSATINSIF---GEEK-----------TSI-----------H-----AFEPGTTSVKEIVGTVDGV 737 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL---Gee~-----------a~V-----------s-----s~~gtTt~~~~~~~evdGr 737 (1334)
..++.+++|...+|||||.-.|| |.-. +.. . ...+.|.+.....++-..+
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 56899999999999999998875 3200 000 0 1125566666666666778
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCcc------CCCCcHHHHHHHHHHhcccCCceEE
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQT------RDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t------~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
.++|+|+||..+..- ..|..+ ..+|+.++|++++... ...|-+..+ .+.+.+| -...|
T Consensus 256 ~~tliDaPGhkdFi~---------nmi~g~---sqaD~avLvvd~s~~~FE~gfd~~gQtrEha-~llr~Lg---i~qli 319 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP---------NMISGA---SQADVAVLVVDASTGEFESGFDPGGQTREHA-LLLRSLG---ISQLI 319 (603)
T ss_pred eEEEecCCCccccch---------hhhccc---cccceEEEEEECCcchhhhccCCCCchHHHH-HHHHHcC---cceEE
Confidence 899999999765421 112111 1368888888876432 112233333 3444666 46899
Q ss_pred EEEeccCCCC
Q 000717 812 VTLTHAASAP 821 (1334)
Q Consensus 812 IVLTK~D~Le 821 (1334)
|++||.|.+.
T Consensus 320 vaiNKmD~V~ 329 (603)
T KOG0458|consen 320 VAINKMDLVS 329 (603)
T ss_pred EEeecccccC
Confidence 9999999875
No 330
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.80 E-value=0.0093 Score=77.91 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=63.2
Q ss_pred CChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC------------------eEEEEEeCCCCCCCCcchhhHHHHH
Q 000717 700 VGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG------------------VKIRVIDTPGLKSSGVEQGVNRKVL 761 (1334)
Q Consensus 700 VGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG------------------rkVtLIDTPGL~ds~i~d~~~ekIl 761 (1334)
++||||+-+|-+...+. .-.++-|...-.+...++. ..+.||||||.... .. +
T Consensus 472 ~~KTtLLD~iR~t~v~~-~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~-l 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAK-KEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TS-L 542 (1049)
T ss_pred cccccHHHHHhCCCccc-ccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HH-H
Confidence 56999999999876533 2233455544333333321 12799999994321 00 0
Q ss_pred HHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 762 ASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 762 reIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
...... .+|++++|++++..... +....++.+.. ...|+|+|+||+|+.+
T Consensus 543 --r~~g~~--~aDivlLVVDa~~Gi~~-qT~e~I~~lk~-----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 --RKRGGS--LADLAVLVVDINEGFKP-QTIEAINILRQ-----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred --HHhhcc--cCCEEEEEEECcccCCH-hHHHHHHHHHH-----cCCCEEEEEECCCCcc
Confidence 111222 46999999998865332 45556665542 3469999999999875
No 331
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0087 Score=64.89 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=68.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeE--EEEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSV--KEIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~--~~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
-++++++|-+|||||.|+-......-..+.+ .|-.+ -.....++++ ++.|+||.|... ++++
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-----------frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-----------FRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHH-----------HHHH
Confidence 4789999999999999999988764322222 23222 1223344554 678999999532 2333
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc-CCceEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ-IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e-a~K~tIIVLTK~D~Lep 822 (1334)
.+..-+ ++-..|+|-++++...- -.+-.||.+..-+. ...-+|++-||+|+...
T Consensus 72 ~~syYr-~a~GalLVydit~r~sF---~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 72 TRSYYR-GAAGALLVYDITRRESF---NHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred HHHHhc-cCcceEEEEEccchhhH---HHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 222222 34567888888865321 23445555544432 22345566699998654
No 332
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.0018 Score=77.10 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=62.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC--------CcceeccCCC-c-------e----ee--EEEEE---------EEeCCe
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE--------EKTSIHAFEP-G-------T----TS--VKEIV---------GTVDGV 737 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe--------e~a~Vss~~g-t-------T----t~--~~~~~---------~evdGr 737 (1334)
.-.|+|+|++||||||++-.|... ....+..-.. . + .. ..... ....+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 347999999999999999877432 1111111100 0 0 00 00000 011245
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHh-hCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTK-KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIk-kcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
.+.||||||..... ...+..+..++. ...+.-+++|++++... ..++.+.+.|..- ...=++|||
T Consensus 301 DlVlIDt~G~~~~d------~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~------~~l~~~~~~f~~~--~~~~vI~TK 366 (424)
T PRK05703 301 DVILIDTAGRSQRD------KRLIEELKALIEFSGEPIDVYLVLSATTKY------EDLKDIYKHFSRL--PLDGLIFTK 366 (424)
T ss_pred CEEEEeCCCCCCCC------HHHHHHHHHHHhccCCCCeEEEEEECCCCH------HHHHHHHHHhCCC--CCCEEEEec
Confidence 78999999985432 222344444444 22245566666665332 2344444455422 233577999
Q ss_pred cCCCC
Q 000717 817 AASAP 821 (1334)
Q Consensus 817 ~D~Le 821 (1334)
+|...
T Consensus 367 lDet~ 371 (424)
T PRK05703 367 LDETS 371 (424)
T ss_pred ccccc
Confidence 99754
No 333
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.014 Score=70.04 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=64.5
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC-------cceec-cC-CCce----e------eEEEEEE----------EeCCeEE
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE-------KTSIH-AF-EPGT----T------SVKEIVG----------TVDGVKI 739 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee-------~a~Vs-s~-~gtT----t------~~~~~~~----------evdGrkV 739 (1334)
+..|+|+|++||||||++..|.... ...++ +. .... . ....... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568999999999999998886421 11111 10 0000 0 0000000 0135678
Q ss_pred EEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC---CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 740 RVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC---APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 740 tLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc---gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
.||||||+..... ..+.++.+++..+ .++-+++|++++.... .+..+.+.|. .....=++|||
T Consensus 303 VLIDTaGr~~rd~------~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~------~~~~~~~~f~--~~~~~glIlTK 368 (432)
T PRK12724 303 ILIDTAGYSHRNL------EQLERMQSFYSCFGEKDSVENLLVLSSTSSYH------HTLTVLKAYE--SLNYRRILLTK 368 (432)
T ss_pred EEEeCCCCCccCH------HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH------HHHHHHHHhc--CCCCCEEEEEc
Confidence 9999999865432 2233343433322 2456778888775432 2333444452 22345677899
Q ss_pred cCCCCC
Q 000717 817 AASAPP 822 (1334)
Q Consensus 817 ~D~Lep 822 (1334)
.|....
T Consensus 369 LDEt~~ 374 (432)
T PRK12724 369 LDEADF 374 (432)
T ss_pred ccCCCC
Confidence 997654
No 334
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=96.65 E-value=0.0074 Score=63.41 Aligned_cols=115 Identities=13% Similarity=0.112 Sum_probs=72.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.+++.++|--++||||++|.++...-.. .-..|........+.+...+.++|.||-...+ .+.+ ++.
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~e---dmiptvGfnmrk~tkgnvtiklwD~gGq~rfr-------smWe---ryc 86 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLE---DMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMWE---RYC 86 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchh---hhcccccceeEEeccCceEEEEEecCCCccHH-------HHHH---HHh
Confidence 4789999999999999999998532211 11334445555566667789999999954321 1111 222
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCC--ceEEEEEeccCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIW--RSAIVTLTHAASAP 821 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~--K~tIIVLTK~D~Le 821 (1334)
. +.++++||+|+..+..-...+ ..+...+....| .|++|+-||.|...
T Consensus 87 R--~v~aivY~VDaad~~k~~~sr---~EL~~LL~k~~l~gip~LVLGnK~d~~~ 136 (186)
T KOG0075|consen 87 R--GVSAIVYVVDAADPDKLEASR---SELHDLLDKPSLTGIPLLVLGNKIDLPG 136 (186)
T ss_pred h--cCcEEEEEeecCCcccchhhH---HHHHHHhcchhhcCCcEEEecccccCcc
Confidence 2 469999999987643211122 223334444443 58899999999643
No 335
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.13 Score=61.86 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=74.0
Q ss_pred ccEEEEEeecCCChhhhhhhhc--CCCc-------c------eeccC------CCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIF--GEEK-------T------SIHAF------EPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLL--Gee~-------a------~Vss~------~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
..+.+||-.|-+||+||--.|| |... + .+++. .+........++.+.+..|.|+||||-
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 4578999999999999998775 3211 0 01110 122223345567788999999999998
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 748 KSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 748 ~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.|.. +...+.+ . .+|.+|.|+|+...... +-+++++..+ . ...|++-.+||+|.--
T Consensus 92 eDFS------EDTYRtL----t--AvDsAvMVIDaAKGiE~-qT~KLfeVcr-l----R~iPI~TFiNKlDR~~ 147 (528)
T COG4108 92 EDFS------EDTYRTL----T--AVDSAVMVIDAAKGIEP-QTLKLFEVCR-L----RDIPIFTFINKLDREG 147 (528)
T ss_pred cccc------hhHHHHH----H--hhheeeEEEecccCccH-HHHHHHHHHh-h----cCCceEEEeecccccc
Confidence 7763 2222322 2 25889999999877643 4455554332 2 2368888899999643
No 336
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.016 Score=69.27 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=80.2
Q ss_pred EEEEEeecCCChhhhhhhhcCCCccee--ccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSI--HAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~V--ss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.|+.+|.---|||||+.++.|..-..- -...+.|.+...++.......+.|||+||..+. + ..+...
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~---------i-~~miag- 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF---------I-SNLLAG- 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH---------H-HHHHhh-
Confidence 478889999999999999998643221 123467778888888887889999999996422 2 222222
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
.+.+|.+|+|++++..... +....|..+ +.|| .++.|||+||+|...+
T Consensus 71 -~~~~d~alLvV~~deGl~~-qtgEhL~iL-dllg---i~~giivltk~D~~d~ 118 (447)
T COG3276 71 -LGGIDYALLVVAADEGLMA-QTGEHLLIL-DLLG---IKNGIIVLTKADRVDE 118 (447)
T ss_pred -hcCCceEEEEEeCccCcch-hhHHHHHHH-HhcC---CCceEEEEeccccccH
Confidence 2368999999999766543 344445433 3566 3678999999998854
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.55 E-value=0.016 Score=59.67 Aligned_cols=73 Identities=22% Similarity=0.323 Sum_probs=41.8
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
+..+.||||||.... ....+..+..+.....++.+++|+++.... .....+..+.+.++ ..-+|+|
T Consensus 82 ~~d~viiDt~g~~~~------~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~-----~~~vilt 147 (173)
T cd03115 82 NFDVVIVDTAGRLQI------DENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG-----ITGVILT 147 (173)
T ss_pred CCCEEEEECcccchh------hHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC-----CCEEEEE
Confidence 556899999997532 123344444433322478899998874221 12233333332222 3567789
Q ss_pred ccCCCCC
Q 000717 816 HAASAPP 822 (1334)
Q Consensus 816 K~D~Lep 822 (1334)
|.|....
T Consensus 148 k~D~~~~ 154 (173)
T cd03115 148 KLDGDAR 154 (173)
T ss_pred CCcCCCC
Confidence 9997664
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.53 E-value=0.0071 Score=68.41 Aligned_cols=120 Identities=17% Similarity=0.214 Sum_probs=68.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC------cceecc-CCC-------ce----eeEEEEEE--------------EeCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE------KTSIHA-FEP-------GT----TSVKEIVG--------------TVDG 736 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee------~a~Vss-~~g-------tT----t~~~~~~~--------------evdG 736 (1334)
.-+|+++|++|+||||++..|.+.- ...+.. ... .+ ..+..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3689999999999999998886431 111111 000 00 00000000 0124
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
..+.||||||-.... ...++++.+++....|+-+++|++++.... | +.+ +.+.|.. ....=++|||
T Consensus 155 ~D~ViIDt~Gr~~~~------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~---d--~~~-~~~~f~~--~~~~~~I~TK 220 (270)
T PRK06731 155 VDYILIDTAGKNYRA------SETVEEMIETMGQVEPDYICLTLSASMKSK---D--MIE-IITNFKD--IHIDGIVFTK 220 (270)
T ss_pred CCEEEEECCCCCcCC------HHHHHHHHHHHhhhCCCeEEEEEcCccCHH---H--HHH-HHHHhCC--CCCCEEEEEe
Confidence 578999999975432 234455555565556788899988764332 1 222 3334543 2345567899
Q ss_pred cCCCCC
Q 000717 817 AASAPP 822 (1334)
Q Consensus 817 ~D~Lep 822 (1334)
-|....
T Consensus 221 lDet~~ 226 (270)
T PRK06731 221 FDETAS 226 (270)
T ss_pred ecCCCC
Confidence 997664
No 339
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.48 E-value=0.0023 Score=76.59 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=68.6
Q ss_pred CccEEEEEeecCCChhhhhhhhc------CCCcceecc--CCCce---------e-eEEEEEE---------------Ee
Q 000717 688 FTLNILVLGKTGVGKSATINSIF------GEEKTSIHA--FEPGT---------T-SVKEIVG---------------TV 734 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL------Gee~a~Vss--~~gtT---------t-~~~~~~~---------------ev 734 (1334)
.+..|+++|.+|+||||++-.|. |.....++. +.+.. . .+..+.. ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 46789999999999999997774 222222211 10100 0 0000000 00
Q ss_pred CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 735 DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 735 dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
....+.||||||.... ....+.+++.....+.||.+++|++++... ..++..+. |.... ...-+|+
T Consensus 174 ~~~DvVIIDTAGr~~~------d~~lm~El~~l~~~~~pdevlLVvda~~gq------~av~~a~~-F~~~l-~i~gvIl 239 (437)
T PRK00771 174 KKADVIIVDTAGRHAL------EEDLIEEMKEIKEAVKPDEVLLVIDATIGQ------QAKNQAKA-FHEAV-GIGGIII 239 (437)
T ss_pred hcCCEEEEECCCcccc------hHHHHHHHHHHHHHhcccceeEEEeccccH------HHHHHHHH-HHhcC-CCCEEEE
Confidence 1347899999997543 234556665555555688999999876532 23443332 44322 2456778
Q ss_pred eccCCCCC
Q 000717 815 THAASAPP 822 (1334)
Q Consensus 815 TK~D~Lep 822 (1334)
||.|....
T Consensus 240 TKlD~~a~ 247 (437)
T PRK00771 240 TKLDGTAK 247 (437)
T ss_pred ecccCCCc
Confidence 99996543
No 340
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.37 E-value=0.01 Score=63.77 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=73.7
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
...||+++|--|+||||+++.|--.+...+. .|.....-...+.+.+++++|.-|-..-+ ..-+.+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttv----PTiGfnVE~v~ykn~~f~vWDvGGq~k~R----------~lW~~Y 81 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTV----PTIGFNVETVEYKNISFTVWDVGGQEKLR----------PLWKHY 81 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccCC----CccccceeEEEEcceEEEEEecCCCcccc----------cchhhh
Confidence 4689999999999999999999655444432 23344444556678999999998853221 111223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
.. ..+.++||+|.+...+- ...-+.+..++.+. ...++++.-||-|...
T Consensus 82 ~~--~t~~lIfVvDS~Dr~Ri---~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~ 132 (181)
T KOG0070|consen 82 FQ--NTQGLIFVVDSSDRERI---EEAKEELHRMLAEPELRNAPLLVFANKQDLPG 132 (181)
T ss_pred cc--CCcEEEEEEeCCcHHHH---HHHHHHHHHHHcCcccCCceEEEEechhhccc
Confidence 33 24899999987755431 12333444444444 2457888889998643
No 341
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.023 Score=67.36 Aligned_cols=121 Identities=18% Similarity=0.259 Sum_probs=66.9
Q ss_pred CccEEEEEeecCCChhhhhhhhcCC----------Ccceec--cCCCcee----------eEEEEE-----------EEe
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGE----------EKTSIH--AFEPGTT----------SVKEIV-----------GTV 734 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGe----------e~a~Vs--s~~gtTt----------~~~~~~-----------~ev 734 (1334)
.+..|+++|++||||||++..|... ....++ .+...+. .+.... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 3568999999999999999877531 121111 1100000 000000 011
Q ss_pred CCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCC-CEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEE
Q 000717 735 DGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAP-DIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVT 813 (1334)
Q Consensus 735 dGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgp-DVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIV 813 (1334)
.+..+.||||||..... ...+.++.+.+..+.+ +-+++|++++.... + +..+...|.. ....=++
T Consensus 253 ~~~DlVLIDTaGr~~~~------~~~l~el~~~l~~~~~~~e~~LVlsat~~~~---~---~~~~~~~~~~--~~~~~~I 318 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD------FMKLAEMKELLNACGRDAEFHLAVSSTTKTS---D---VKEIFHQFSP--FSYKTVI 318 (388)
T ss_pred CCCCEEEEcCCCCCccC------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH---H---HHHHHHHhcC--CCCCEEE
Confidence 35678999999976431 2235566666665543 35788888875432 2 2223233321 1245677
Q ss_pred EeccCCCCC
Q 000717 814 LTHAASAPP 822 (1334)
Q Consensus 814 LTK~D~Lep 822 (1334)
|||-|....
T Consensus 319 ~TKlDet~~ 327 (388)
T PRK12723 319 FTKLDETTC 327 (388)
T ss_pred EEeccCCCc
Confidence 899997654
No 342
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.30 E-value=0.013 Score=77.08 Aligned_cols=124 Identities=19% Similarity=0.197 Sum_probs=68.8
Q ss_pred EEEEeecCCChhhhhhhhcCC-Ccc----eeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcch-hhHHHHHHHHH
Q 000717 692 ILVLGKTGVGKSATINSIFGE-EKT----SIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ-GVNRKVLASIK 765 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGe-e~a----~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d-~~~ekIlreIk 765 (1334)
-+|||++|+||||++..---+ ... ...-..+.|+.|.... +..-++|||.|=.-..... ...+.....+.
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf----~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWF----TDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccc----ccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 589999999999998543211 100 1111123377776443 3445899999965443211 12222233333
Q ss_pred HHHhh----CCCCEEEEEecCCCccC-CCCcH-HH-------HHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 766 KFTKK----CAPDIVLYVDRLDSQTR-DLNDL-PL-------LRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 766 kaIkk----cgpDVVLLVIDad~~t~-e~qDl-~l-------Le~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
..+++ .+++.|++.+++..... +..+. .. |+.|.+.++ +..|+.|++||.|+++
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 33433 24788888887654322 11121 11 333444444 4469999999999997
No 343
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.042 Score=57.95 Aligned_cols=136 Identities=16% Similarity=0.185 Sum_probs=76.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcce--eccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTS--IHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~--Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
-.+|+|+|.+.|||+||+-+-++..-.. ++.. +..-.+..+...-...++.|+||.|... ++.|..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-GidFKvKTvyr~~kRiklQiwDTagqEr-----------yrtiTT 88 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GIDFKVKTVYRSDKRIKLQIWDTAGQER-----------YRTITT 88 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeee-eeeEEEeEeeecccEEEEEEEecccchh-----------hhHHHH
Confidence 4689999999999999999988853211 1111 1101111111111234789999999643 222222
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHH-HHHHHHhcccCC--ceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHH
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLL-RSITNALGTQIW--RSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVV 843 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lL-e~IqeiFG~ea~--K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~L 843 (1334)
+ .-.+++.+|++.+++.... ...+ .|+.. ...-.| -++|+|-||||+-... .++ .+..
T Consensus 89 a-yyRgamgfiLmyDitNeeS----f~svqdw~tq-Iktysw~naqvilvgnKCDmd~eR-----vis--------~e~g 149 (193)
T KOG0093|consen 89 A-YYRGAMGFILMYDITNEES----FNSVQDWITQ-IKTYSWDNAQVILVGNKCDMDSER-----VIS--------HERG 149 (193)
T ss_pred H-HhhccceEEEEEecCCHHH----HHHHHHHHHH-heeeeccCceEEEEecccCCccce-----eee--------HHHH
Confidence 1 1226799999998875432 2222 23332 222244 3789999999975431 122 1335
Q ss_pred HHHHHHhcccee
Q 000717 844 QQSIGQAVGDLR 855 (1334)
Q Consensus 844 QQLIeQcgGRy~ 855 (1334)
++++++-+-.|.
T Consensus 150 ~~l~~~LGfefF 161 (193)
T KOG0093|consen 150 RQLADQLGFEFF 161 (193)
T ss_pred HHHHHHhChHHh
Confidence 677777776553
No 344
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.014 Score=62.50 Aligned_cols=117 Identities=13% Similarity=0.102 Sum_probs=73.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
.-+|+++|--|+||+||++.|-......--+ |.........+.|.+++.+|.-|-. ...+.-++|+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~----------qArr~wkdyf 85 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHL----------QARRVWKDYF 85 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHH----------HHHHHHHHHH
Confidence 4578999999999999999997654332222 2222333456678899999988742 2223345566
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..+ |.++|++++-...+-..-+.-++.+... -.-++.|++|+.||.|...+
T Consensus 86 ~~v--~~iv~lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 86 PQV--DAIVYLVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYA 136 (193)
T ss_pred hhh--ceeEeeeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCc
Confidence 644 8888888766543321223333333211 11267899999999997543
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=96.13 E-value=0.0047 Score=69.65 Aligned_cols=119 Identities=17% Similarity=0.302 Sum_probs=82.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchh-hHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQG-VNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~-~~ekIlreIkkaI 768 (1334)
-|+-++|-|.+||||+++.|.|.. ..+.++..+|-.+......+.|-++.+.|.||+.+...+.. .-++++ ...
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvi----ava 134 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVI----AVA 134 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEE----EEe
Confidence 378999999999999999999974 44555567777777777778899999999999987532211 111111 112
Q ss_pred hhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCc-eEEEEEeccC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWR-SAIVTLTHAA 818 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K-~tIIVLTK~D 818 (1334)
..| .++++|+|.-.+.. .+++++.-.+.||-+..+ |--+.+.|.|
T Consensus 135 rtc--nli~~vld~~kp~~---hk~~ie~eleg~girlnk~pp~i~~kkKd 180 (358)
T KOG1487|consen 135 RTC--NLIFIVLDVLKPLS---HKKIIEKELEGFGIRLNKQPPNIGTKKKD 180 (358)
T ss_pred ecc--cEEEEEeeccCccc---HHHHHHHhhhcceeeccCCCCCccccccc
Confidence 234 78888888776653 578888888899865543 4445555555
No 346
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.10 E-value=0.059 Score=63.03 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=68.7
Q ss_pred cCccEEEEEeecCCChhhhhhhhcC--CCcceeccCC----CceeeEEEEEEEe---------CCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFG--EEKTSIHAFE----PGTTSVKEIVGTV---------DGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLG--ee~a~Vss~~----gtTt~~~~~~~ev---------dGrkVtLIDTPGL~ds~ 751 (1334)
+..++|-|+|.-.+||+||..+|.- ...+--.... +.|.+.-.....+ ...++++||.||--
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa--- 81 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA--- 81 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcH---
Confidence 3468999999999999999998853 2211100111 1122211111111 12357999999942
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
..++.|..... =+|..++|+|+...... |....| +.|.-.-++.|||+||.|.++.
T Consensus 82 -------sLIRtiiggaq--iiDlm~lviDv~kG~Qt-QtAEcL-----iig~~~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 82 -------SLIRTIIGGAQ--IIDLMILVIDVQKGKQT-QTAECL-----IIGELLCKKLVVVINKIDVLPE 137 (522)
T ss_pred -------HHHHHHHhhhh--eeeeeeEEEehhccccc-ccchhh-----hhhhhhccceEEEEeccccccc
Confidence 22233322111 26899999998876543 222222 2454455789999999999875
No 347
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.056 Score=67.11 Aligned_cols=145 Identities=11% Similarity=0.137 Sum_probs=83.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceecc-------C---------CCceeeEEEEEEEe---C--CeEEEEEeCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHA-------F---------EPGTTSVKEIVGTV---D--GVKIRVIDTPGL 747 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss-------~---------~gtTt~~~~~~~ev---d--GrkVtLIDTPGL 747 (1334)
-.++.|+|.-..|||+|+..|..+....... + .+++-...-.+... . .+-+.++||||-
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 3678999999999999999998765422210 0 01111111111111 1 245789999997
Q ss_pred CCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCCCCCCC
Q 000717 748 KSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSG 827 (1334)
Q Consensus 748 ~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~LepDgp~G 827 (1334)
-+.. .++...+. -.|.+++|+|+.....- +-.++++... ....++++|+||.|.+.-+= .-
T Consensus 208 VnF~----------DE~ta~l~--~sDgvVlvvDv~EGVml-ntEr~ikhai-----q~~~~i~vviNKiDRLilEL-kL 268 (971)
T KOG0468|consen 208 VNFS----------DETTASLR--LSDGVVLVVDVAEGVML-NTERIIKHAI-----QNRLPIVVVINKVDRLILEL-KL 268 (971)
T ss_pred ccch----------HHHHHHhh--hcceEEEEEEcccCcee-eHHHHHHHHH-----hccCcEEEEEehhHHHHHHh-cC
Confidence 6542 12222333 24899999998876542 3445555443 23479999999999764210 00
Q ss_pred CCCcHHHHHHhhhHHHHHHHHHhccceeecCc
Q 000717 828 SPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNP 859 (1334)
Q Consensus 828 ~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNn 859 (1334)
+ ..+-|. .|+.+|....+.++.+..
T Consensus 269 P--P~DAY~-----KLrHii~~iN~~is~~s~ 293 (971)
T KOG0468|consen 269 P--PMDAYY-----KLRHIIDEINNLISTFSK 293 (971)
T ss_pred C--hHHHHH-----HHHHHHHHhcchhhhccc
Confidence 1 123343 355667666665555543
No 348
>PRK10867 signal recognition particle protein; Provisional
Probab=96.03 E-value=0.02 Score=68.73 Aligned_cols=120 Identities=18% Similarity=0.284 Sum_probs=64.2
Q ss_pred CccEEEEEeecCCChhhhhhhhc-------CCCcceecc--CCCce--------e--eEEEEEE----------------
Q 000717 688 FTLNILVLGKTGVGKSATINSIF-------GEEKTSIHA--FEPGT--------T--SVKEIVG---------------- 732 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLL-------Gee~a~Vss--~~gtT--------t--~~~~~~~---------------- 732 (1334)
.+..|+++|.+|+||||++-.|. |.....++. +.+.. . .+..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 36789999999999999776553 333333321 11110 0 0000100
Q ss_pred -EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE
Q 000717 733 -TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 733 -evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
...+..+.||||||.... ....+.++........|+-+++|+++... ..+++... .|.... ..+-
T Consensus 179 a~~~~~DvVIIDTaGrl~~------d~~lm~eL~~i~~~v~p~evllVlda~~g------q~av~~a~-~F~~~~-~i~g 244 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHI------DEELMDELKAIKAAVNPDEILLVVDAMTG------QDAVNTAK-AFNEAL-GLTG 244 (433)
T ss_pred HHhcCCCEEEEeCCCCccc------CHHHHHHHHHHHHhhCCCeEEEEEecccH------HHHHHHHH-HHHhhC-CCCE
Confidence 012456899999996532 12334444444444467888999887532 12333332 232222 3356
Q ss_pred EEEeccCCCC
Q 000717 812 VTLTHAASAP 821 (1334)
Q Consensus 812 IVLTK~D~Le 821 (1334)
+|+||.|...
T Consensus 245 iIlTKlD~~~ 254 (433)
T PRK10867 245 VILTKLDGDA 254 (433)
T ss_pred EEEeCccCcc
Confidence 7789999644
No 349
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.01 E-value=0.083 Score=59.19 Aligned_cols=156 Identities=17% Similarity=0.263 Sum_probs=81.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC-cceecc-CCCceeeEEEEEEEe---CCeEEEEEeCCCCCCC-CcchhhHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE-KTSIHA-FEPGTTSVKEIVGTV---DGVKIRVIDTPGLKSS-GVEQGVNRKVLAS 763 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee-~a~Vss-~~gtTt~~~~~~~ev---dGrkVtLIDTPGL~ds-~i~d~~~ekIlre 763 (1334)
.-|.|+|+.-+|||.|+|.|++.. .+.+++ ..++|+.+-...... .+..|.++||.|+.+. .........++ .
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~~~~~~~~d~~if-~ 100 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDVEQSDEKYDAKIF-A 100 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTTTCCCCHHCHHHH-H
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccccccCcccccHHHH-H
Confidence 457899999999999999999853 345544 335666532222111 3467999999999883 22221112222 2
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHH---Hh------------cccCCceEEEEEeccCCCCCCCCCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITN---AL------------GTQIWRSAIVTLTHAASAPPDGPSGS 828 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~Iqe---iF------------G~ea~K~tIIVLTK~D~LepDgp~G~ 828 (1334)
+.-.++ .++||=..-. ... .++..|..+.+ .+ ......+.++|+--|..-... .+.
T Consensus 101 Ls~LLS----S~~IyN~~~~-i~~--~~l~~L~~~~~l~~~i~~~~~~~~~~~~~~~~fp~l~wlvRDf~~~~~~--~~~ 171 (260)
T PF02263_consen 101 LSMLLS----SVLIYNSMGN-IDE--DDLDQLELFTELAKHIRVKYGDSADSEDLGKPFPSLVWLVRDFSLELED--DGG 171 (260)
T ss_dssp HHHHH-----SEEEEEECSS-SSH--HHHHCCHHHHHHHHHHHHTHHHHHHHHCTTTTCEEEEEEEECE-SCTCC--TTE
T ss_pred HHHHHh----CceeeCCCCc-cch--hHHHHHHHHHHHHHHHHHhcccccchhhhcccchHHHHHHhhccchhhh--ccC
Confidence 223333 4677755321 111 12222222211 11 112334678888777643221 234
Q ss_pred CCcHHHHHHhh-------------hHHHHHHHHHhcccee
Q 000717 829 PLSYEIFVAQR-------------SHVVQQSIGQAVGDLR 855 (1334)
Q Consensus 829 P~S~EefLkqr-------------s~~LQQLIeQcgGRy~ 855 (1334)
+.+.++|+.+. ...+++.|..|-.+..
T Consensus 172 ~~t~~eyLe~~L~~~~~~~~~~~~~N~iR~~I~~~F~~~~ 211 (260)
T PF02263_consen 172 KITPQEYLEQALKPESGQDEEIQERNKIRECIRSCFPSRD 211 (260)
T ss_dssp CHHHHHHHHHHCCSSTSSSCCCCCHHHHHHHHHHHECCEE
T ss_pred CCCHHHHHHHHHhcccchhHHHHHhhHHHHHHHHHCCCCe
Confidence 56777887641 1236667777655443
No 350
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.93 E-value=0.024 Score=54.39 Aligned_cols=103 Identities=27% Similarity=0.295 Sum_probs=57.8
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc 771 (1334)
|+|.|+||+|||+++..|...- +.++.-+|.+-+..... ....+.+...+.+ ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~-~~~~~~i~~~~~~-~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYA-GDSEQKIRDFFKK-AKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSST-THHHHHHHHHHHH-HHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccc-ccccccccccccc-cccc
Confidence 6899999999999999998642 23345566666553221 1122333333333 2222
Q ss_pred CCCEEEEEecCCCccCCC------CcHHHHHHHHHHhcccCC--ceEEEEEeccC
Q 000717 772 APDIVLYVDRLDSQTRDL------NDLPLLRSITNALGTQIW--RSAIVTLTHAA 818 (1334)
Q Consensus 772 gpDVVLLVIDad~~t~e~------qDl~lLe~IqeiFG~ea~--K~tIIVLTK~D 818 (1334)
....||++.+++...... ....+++.+...+..... .++++++|--+
T Consensus 57 ~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 57 AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 214888888887654321 124556666666654333 34566655443
No 351
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.86 E-value=0.031 Score=62.59 Aligned_cols=127 Identities=18% Similarity=0.195 Sum_probs=73.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
..+|+++|++|+||||+=-.++..-++.-....+.|-++...+..+-| .-+.++|.-|-. ...+..+..-+..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe------~fmen~~~~q~d~ 77 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE------EFMENYLSSQEDN 77 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH------HHHHHHHhhcchh
Confidence 357999999999999998888854433323334556555444443333 456677876621 1111111111111
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHh-cccCCceEEEEEeccCCCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNAL-GTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiF-G~ea~K~tIIVLTK~D~LepD 823 (1334)
+- +..++++||.++.....+ .|....+.-.+.+ .....-.+.++++|.|+++.+
T Consensus 78 iF-~nV~vli~vFDves~e~~-~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 78 IF-RNVQVLIYVFDVESREME-KDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred hh-eeheeeeeeeeccchhhh-hhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 11 246899999998865443 3555444433322 333334677888999999764
No 352
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.82 E-value=0.015 Score=70.68 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcC
Q 000717 689 TLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
.--|+|+|++||||||++..|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34699999999999999998875
No 353
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=95.58 E-value=0.018 Score=60.19 Aligned_cols=93 Identities=15% Similarity=0.123 Sum_probs=62.8
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFL-RLVHRLGYSPE 643 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~-rl~~RLGlsp~ 643 (1334)
..|++|++||+..|+.+..++...+++.. +.|+++++ ||+|.... .++.+..++. .++...++...
T Consensus 93 ~~D~ailvVda~~g~~~~~~~~l~~~~~~------~~p~ivvl----NK~D~~~~---~~~~~~~~~~~~l~~~~~~~~~ 159 (188)
T PF00009_consen 93 QADIAILVVDANDGIQPQTEEHLKILREL------GIPIIVVL----NKMDLIEK---ELEEIIEEIKEKLLKEYGENGE 159 (188)
T ss_dssp TSSEEEEEEETTTBSTHHHHHHHHHHHHT------T-SEEEEE----ETCTSSHH---HHHHHHHHHHHHHHHHTTSTTT
T ss_pred ccccceeeeeccccccccccccccccccc------ccceEEee----eeccchhh---hHHHHHHHHHHHhccccccCcc
Confidence 67899999999999999999988888766 56788888 88887532 2222222222 33466666431
Q ss_pred -chhhhhhhhcccccccCCchhhhcHHHHHHHhh
Q 000717 644 -DSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTAL 676 (1334)
Q Consensus 644 -N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~ 676 (1334)
.. -+.++||.+|.|+..| ++.+...+|
T Consensus 160 ~~~----~vi~~Sa~~g~gi~~L--l~~l~~~~P 187 (188)
T PF00009_consen 160 EIV----PVIPISALTGDGIDEL--LEALVELLP 187 (188)
T ss_dssp STE----EEEEEBTTTTBTHHHH--HHHHHHHS-
T ss_pred ccc----eEEEEecCCCCCHHHH--HHHHHHhCc
Confidence 00 1357899999999988 566665543
No 354
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.57 E-value=0.04 Score=57.81 Aligned_cols=117 Identities=15% Similarity=0.187 Sum_probs=70.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCC-eEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDG-VKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdG-rkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
+..+||+++|--|+||+|++..|-+++...+.+..+-. .......| .++.|+|.-|=+.-+ . --.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~IR--p--------yWs 80 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRGIR--P--------YWS 80 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcc----eEEEeecCcEEEEEEecCCccccc--h--------hhh
Confidence 46799999999999999999999999876655433322 22334445 789999988843221 1 111
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Lep 822 (1334)
.+.. ..|.++||+|.+....- + .+-+.+.+.+... ...|+.|--||-|++..
T Consensus 81 NYye--nvd~lIyVIDS~D~krf--e-E~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 81 NYYE--NVDGLIYVIDSTDEKRF--E-EISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred hhhh--ccceEEEEEeCCchHhH--H-HHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2333 46999999996543321 1 1222222222211 22366666677666543
No 355
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.53 E-value=0.056 Score=67.77 Aligned_cols=114 Identities=18% Similarity=0.186 Sum_probs=70.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC------------C------eEEEEEeCCCCCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD------------G------VKIRVIDTPGLKSS 750 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd------------G------rkVtLIDTPGL~ds 750 (1334)
..-++|+|.--+||+-|+..|-+.++-. +..++.|..+-..++... + -.+.+|||||....
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 3457999999999999999998764322 222333333222222111 1 13689999994322
Q ss_pred CcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 751 GVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 751 ~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. .++ .+..+.| |+.|+|+++-.... .+-...+..|+ ....|.||.|||.|.+=
T Consensus 554 t--------nlR--srgsslC--~~aIlvvdImhGle-pqtiESi~lLR-----~rktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 554 T--------NLR--SRGSSLC--DLAILVVDIMHGLE-PQTIESINLLR-----MRKTPFIVALNKIDRLY 606 (1064)
T ss_pred h--------hhh--hcccccc--ceEEEEeehhccCC-cchhHHHHHHH-----hcCCCeEEeehhhhhhc
Confidence 1 011 1234456 88999999876653 24555566555 23469999999999873
No 356
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.52 E-value=0.047 Score=56.30 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=17.8
Q ss_pred EEEEeecCCChhhhhhhhcC
Q 000717 692 ILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLG 711 (1334)
|.++|++|+||||++..|..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988854
No 357
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.43 E-value=0.016 Score=65.47 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhc
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL 710 (1334)
....+|-|.|.||+|||||++.|.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHH
Confidence 356899999999999999999985
No 358
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=95.28 E-value=0.01 Score=74.37 Aligned_cols=79 Identities=13% Similarity=0.205 Sum_probs=47.5
Q ss_pred EEEEEeCCCCCCCCcc---hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEE
Q 000717 738 KIRVIDTPGLKSSGVE---QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTL 814 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~---d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVL 814 (1334)
.+++||.||+.+.... ......+...+..++. +++++++.+....... .-...++...++- ..+..+|-|+
T Consensus 133 ~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~--~~~~iILav~~an~d~--ats~alkiarevD--p~g~RTigvi 206 (657)
T KOG0446|consen 133 NLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIE--KPNRIILAVTPANSDI--ATSPALVVAREVD--PGGSRTLEVI 206 (657)
T ss_pred hhhhcCCCCCcccccCCCCccHHHHHHHHHHHhcc--ccchhhhhccchhhhh--hcCHHHHHHHhhC--CCccchhHHh
Confidence 3689999999877432 2445566666667776 4566666543322110 1122344444321 2456899999
Q ss_pred eccCCCCC
Q 000717 815 THAASAPP 822 (1334)
Q Consensus 815 TK~D~Lep 822 (1334)
||+|..+.
T Consensus 207 tK~Dlmdk 214 (657)
T KOG0446|consen 207 TKFDFMDK 214 (657)
T ss_pred hhHHhhhc
Confidence 99998865
No 359
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.012 Score=70.73 Aligned_cols=125 Identities=23% Similarity=0.312 Sum_probs=75.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhc---CCCccee----------ccCC---CceeeEE-----EE------E--------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF---GEEKTSI----------HAFE---PGTTSVK-----EI------V-------- 731 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL---Gee~a~V----------ss~~---gtTt~~~-----~~------~-------- 731 (1334)
..|.-|.+||-.||||||-+-.|. -++.+.+ +... -+++... .+ +
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 368899999999999999887763 2222211 1100 0111110 00 0
Q ss_pred ------EEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc
Q 000717 732 ------GTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ 805 (1334)
Q Consensus 732 ------~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e 805 (1334)
....|..|.||||+|-... ++..+..+.+++...+||.||+|-.+--.+. ...-++.+.+.++..
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~------~~~lm~~l~k~~~~~~pd~i~~vgealvg~d---sv~q~~~fn~al~~~ 526 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHN------NAPLMTSLAKLIKVNKPDLILFVGEALVGND---SVDQLKKFNRALADH 526 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccC------ChhHHHHHHHHHhcCCCceEEEehhhhhCcH---HHHHHHHHHHHHhcC
Confidence 1124667999999995432 3457788888999889999999976554443 233455555555543
Q ss_pred CCceE--EEEEeccCCC
Q 000717 806 IWRSA--IVTLTHAASA 820 (1334)
Q Consensus 806 a~K~t--IIVLTK~D~L 820 (1334)
...+. -|++||+|.+
T Consensus 527 ~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 527 STPRLIDGILLTKFDTV 543 (587)
T ss_pred CCccccceEEEEeccch
Confidence 32222 3788999954
No 360
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.15 E-value=0.075 Score=63.90 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=41.0
Q ss_pred CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEe
Q 000717 736 GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT 815 (1334)
Q Consensus 736 GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLT 815 (1334)
+..+.||||||.... ....+.++.++.....|+-+++|+++.... .+++... .|.... ...=+|+|
T Consensus 182 ~~DvVIIDTaGr~~~------d~~l~~eL~~i~~~~~p~e~lLVvda~tgq------~~~~~a~-~f~~~v-~i~giIlT 247 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI------DEELMEELAAIKEILNPDEILLVVDAMTGQ------DAVNTAK-TFNERL-GLTGVVLT 247 (428)
T ss_pred CCCEEEEeCCCcccc------CHHHHHHHHHHHHhhCCceEEEEEeccchH------HHHHHHH-HHHhhC-CCCEEEEe
Confidence 456899999997542 123444444444444578889998875321 2333332 232222 23456689
Q ss_pred ccCCCC
Q 000717 816 HAASAP 821 (1334)
Q Consensus 816 K~D~Le 821 (1334)
|.|...
T Consensus 248 KlD~~~ 253 (428)
T TIGR00959 248 KLDGDA 253 (428)
T ss_pred CccCcc
Confidence 999643
No 361
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=95.15 E-value=0.036 Score=60.58 Aligned_cols=116 Identities=18% Similarity=0.104 Sum_probs=69.4
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeC-CeE--EEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVD-GVK--IRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evd-Grk--VtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
.++++|||-.++||++++-+.... .+... .-|+-.+-......++ |+. +.++||+|-.+- ..++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------DrlR 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DRLR 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cccc
Confidence 588999999999999999766543 22211 1122223334445664 764 578999985432 1122
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
-++-...|+||+|..+..+..- +--.-+|+-++...-..-|+|+|.||.|+.
T Consensus 71 -plsY~~tdvfl~cfsv~~p~S~--~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 71 -PLSYPQTDVFLLCFSVVSPESF--ENVKSKWIPEIKHHCPNVPIILVGTKADLR 122 (198)
T ss_pred -ccCCCCCCEEEEEEEcCChhhH--HHHHhhhhHHHHhhCCCCCEEEEeehHHhh
Confidence 2344457999998877765431 111122233332223446999999999987
No 362
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.11 E-value=0.18 Score=53.06 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=69.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHH
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKF 767 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkka 767 (1334)
.+++|+.+|-.++||+|++-.|.-.....+ -.|+.......++.+.++.+.|.-|-. ++..--+++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~----ipTvGFnvetVtykN~kfNvwdvGGqd----------~iRplWrhY 81 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQD----------KIRPLWRHY 81 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc----ccccceeEEEEEeeeeEEeeeeccCch----------hhhHHHHhh
Confidence 368999999999999999998865432211 123334445566778889999987732 111122223
Q ss_pred HhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCc--eEEEEEeccCCCC
Q 000717 768 TKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWR--SAIVTLTHAASAP 821 (1334)
Q Consensus 768 IkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K--~tIIVLTK~D~Le 821 (1334)
.. +...+|||+|.....+- ...-..+.+++++...+ +.+|+.||-|+..
T Consensus 82 y~--gtqglIFV~Dsa~~dr~---eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~ 132 (180)
T KOG0071|consen 82 YT--GTQGLIFVVDSADRDRI---EEARNELHRIINDREMRDAIILILANKQDLPD 132 (180)
T ss_pred cc--CCceEEEEEeccchhhH---HHHHHHHHHHhCCHhhhcceEEEEecCccccc
Confidence 22 45688898886644221 12233445556655544 4455668888643
No 363
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=95.10 E-value=0.13 Score=58.00 Aligned_cols=131 Identities=15% Similarity=0.207 Sum_probs=72.6
Q ss_pred cccccccCCchhhhcHHHHHHHhhhhhHhhhccccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEE
Q 000717 653 RLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVG 732 (1334)
Q Consensus 653 rLSA~hG~Gi~dLl~LD~a~~~~~e~eae~~e~l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~ 732 (1334)
+|....-..+.+|+.++.-...+..-...-... ....+++|-|..|+||||++.+|+.+-...
T Consensus 17 ~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~---------------- 79 (249)
T PF05673_consen 17 PIKHPDPIRLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQ---------------- 79 (249)
T ss_pred ecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhc----------------
Confidence 344444445566666666555444333222222 246789999999999999999999752110
Q ss_pred EeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEE
Q 000717 733 TVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIV 812 (1334)
Q Consensus 733 evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tII 812 (1334)
| +++|..+.-. -..+..+...+...+..-||||.|++ +.......+.|+.+.+.=-.....|++|
T Consensus 80 ---G--LRlIev~k~~---------L~~l~~l~~~l~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 80 ---G--LRLIEVSKED---------LGDLPELLDLLRDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred ---C--ceEEEECHHH---------hccHHHHHHHHhcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEE
Confidence 1 3444433210 01123344445544456788888876 4333245566666665333334457777
Q ss_pred EEe
Q 000717 813 TLT 815 (1334)
Q Consensus 813 VLT 815 (1334)
..|
T Consensus 145 yAT 147 (249)
T PF05673_consen 145 YAT 147 (249)
T ss_pred EEe
Confidence 665
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.056 Score=67.99 Aligned_cols=112 Identities=16% Similarity=0.147 Sum_probs=73.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCC---------------CceeeEEEEEEEeCCeEEEEEeCCCCCCCCcc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFE---------------PGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVE 753 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~---------------gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~ 753 (1334)
-.+|.++-.---||+||..+|+-....+.+..+ +.|-....+.....+..+.+||+||-.|...
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~s- 87 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSS- 87 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhh-
Confidence 357899999999999999999865543322222 2333333444555788899999999877631
Q ss_pred hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHH--HHHHHhcccCCceEEEEEeccCCC
Q 000717 754 QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLR--SITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 754 d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe--~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
++..+...| |..|+++|+-..... +...+++ |+. ....|+|+||.|.+
T Consensus 88 ---------evssas~l~--d~alvlvdvvegv~~-qt~~vlrq~~~~-------~~~~~lvinkidrl 137 (887)
T KOG0467|consen 88 ---------EVSSASRLS--DGALVLVDVVEGVCS-QTYAVLRQAWIE-------GLKPILVINKIDRL 137 (887)
T ss_pred ---------hhhhhhhhc--CCcEEEEeeccccch-hHHHHHHHHHHc-------cCceEEEEehhhhH
Confidence 222333344 777777777766543 3445555 332 25789999999954
No 365
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=95.07 E-value=0.078 Score=64.19 Aligned_cols=114 Identities=18% Similarity=0.165 Sum_probs=71.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcce--------------eccCCCceeeEEEEEEEeC---C--eEEEEEeCCCCCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTS--------------IHAFEPGTTSVKEIVGTVD---G--VKIRVIDTPGLKSS 750 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~--------------Vss~~gtTt~~~~~~~evd---G--rkVtLIDTPGL~ds 750 (1334)
.+..++-.---|||||...|+-..... +-...+.|-..+.....+. | ..+.||||||--|.
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 457788899999999999997432111 1112355665555444442 2 46889999998887
Q ss_pred CcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 751 GVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 751 ~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
... +.+.+..| ...|+|+|+++.... ..+..... .+ +..--+|.|+||.|+..
T Consensus 90 sYE----------VSRSLAAC--EGalLvVDAsQGveA---QTlAN~Yl-Al--e~~LeIiPViNKIDLP~ 142 (603)
T COG0481 90 SYE----------VSRSLAAC--EGALLVVDASQGVEA---QTLANVYL-AL--ENNLEIIPVLNKIDLPA 142 (603)
T ss_pred EEE----------ehhhHhhC--CCcEEEEECccchHH---HHHHHHHH-HH--HcCcEEEEeeecccCCC
Confidence 542 33455555 677888899887642 22222222 12 23456899999999743
No 366
>COG1159 Era GTPase [General function prediction only]
Probab=94.94 E-value=0.044 Score=62.97 Aligned_cols=115 Identities=19% Similarity=0.141 Sum_probs=77.7
Q ss_pred cCCcccccccccccHHHHHHHHHHhcCCCCCCCceeeeccCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEE
Q 000717 526 VDTDEEGEGKELFDSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLAT 605 (1334)
Q Consensus 526 ~~~d~~~~~~elFdsaalaallkAat~~~~~gg~v~its~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvL 605 (1334)
+||-+--+.+-.|+..+-.++..|.. ..|++||+||+..+.++.|+.+...|++. +.|+++
T Consensus 59 vDTPGih~pk~~l~~~m~~~a~~sl~-------------dvDlilfvvd~~~~~~~~d~~il~~lk~~------~~pvil 119 (298)
T COG1159 59 VDTPGIHKPKHALGELMNKAARSALK-------------DVDLILFVVDADEGWGPGDEFILEQLKKT------KTPVIL 119 (298)
T ss_pred EeCCCCCCcchHHHHHHHHHHHHHhc-------------cCcEEEEEEeccccCCccHHHHHHHHhhc------CCCeEE
Confidence 56666555566666666655555553 77999999999999999999999999874 579999
Q ss_pred EecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhhcccccccCCchhhhcHHHHHHHhhh
Q 000717 606 GGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQ 677 (1334)
Q Consensus 606 aa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~e 677 (1334)
++ ||.|....... +..+...+ -..+.+.. +.++||.+|.++..| ++.+...+++
T Consensus 120 ~i----NKID~~~~~~~-l~~~~~~~---~~~~~f~~--------ivpiSA~~g~n~~~L--~~~i~~~Lpe 173 (298)
T COG1159 120 VV----NKIDKVKPKTV-LLKLIAFL---KKLLPFKE--------IVPISALKGDNVDTL--LEIIKEYLPE 173 (298)
T ss_pred EE----EccccCCcHHH-HHHHHHHH---HhhCCcce--------EEEeeccccCCHHHH--HHHHHHhCCC
Confidence 98 77764332111 11111111 12333432 578999999999998 4666655553
No 367
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.73 E-value=0.12 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
..-.++|+|++|+|||||++.|.|-.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34578999999999999999999964
No 368
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.64 E-value=0.29 Score=56.76 Aligned_cols=136 Identities=15% Similarity=0.096 Sum_probs=82.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCc------c-e---eccC-----CCceeeEEEEEEEeCCeEEEEEeCCCCCCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEK------T-S---IHAF-----EPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG 751 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~------a-~---Vss~-----~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~ 751 (1334)
...++|..||.-.-||+||.-+|...-. + . +... .+.|-.......+...+.+..||+||-.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD-- 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH--
Confidence 3568999999999999999998864210 0 0 1111 14455555566667789999999999642
Q ss_pred cchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCc-eEEEEEeccCCCCCCCCCCCC
Q 000717 752 VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWR-SAIVTLTHAASAPPDGPSGSP 829 (1334)
Q Consensus 752 i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K-~tIIVLTK~D~LepDgp~G~P 829 (1334)
++...|..+.. -|..|+|+.++..... |-+ .+| +....+- ++|+.+||+|++...
T Consensus 88 -------YvKNMItgAaq---mDgAILVVsA~dGpmP-qTrEHiL------larqvGvp~ivvflnK~Dmvdd~------ 144 (394)
T COG0050 88 -------YVKNMITGAAQ---MDGAILVVAATDGPMP-QTREHIL------LARQVGVPYIVVFLNKVDMVDDE------ 144 (394)
T ss_pred -------HHHHHhhhHHh---cCccEEEEEcCCCCCC-cchhhhh------hhhhcCCcEEEEEEecccccCcH------
Confidence 33333433322 3666666666654332 222 222 2233444 677888999998632
Q ss_pred CcHHHHHHhhhHHHHHHHHHhc
Q 000717 830 LSYEIFVAQRSHVVQQSIGQAV 851 (1334)
Q Consensus 830 ~S~EefLkqrs~~LQQLIeQcg 851 (1334)
+.+.--...+++++..++
T Consensus 145 ----ellelVemEvreLLs~y~ 162 (394)
T COG0050 145 ----ELLELVEMEVRELLSEYG 162 (394)
T ss_pred ----HHHHHHHHHHHHHHHHcC
Confidence 334433456788887665
No 369
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.53 E-value=0.1 Score=60.97 Aligned_cols=124 Identities=24% Similarity=0.293 Sum_probs=65.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhcC------CCcceec-c-CC----------CceeeEEEEEEE---------------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFG------EEKTSIH-A-FE----------PGTTSVKEIVGT--------------- 733 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLG------ee~a~Vs-s-~~----------gtTt~~~~~~~e--------------- 733 (1334)
..+.-|+++|-.|+||||+|-.|.. ..+.... + +. +....+..+...
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3578899999999999999987752 2211110 0 00 000011111111
Q ss_pred --eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC---CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCc
Q 000717 734 --VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC---APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWR 808 (1334)
Q Consensus 734 --vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc---gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K 808 (1334)
-.+..+.||||+|=...+.. . -.-++.|.+.+... .||=+|+++|++..... ..=++.+.+.. .
T Consensus 217 Akar~~DvvliDTAGRLhnk~n--L-M~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna---l~QAk~F~eav-----~ 285 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKN--L-MDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA---LSQAKIFNEAV-----G 285 (340)
T ss_pred HHHcCCCEEEEeCcccccCchh--H-HHHHHHHHHHhccccCCCCceEEEEEEcccChhH---HHHHHHHHHhc-----C
Confidence 12567899999996544211 0 11122233333321 36779999898866532 22233333222 2
Q ss_pred eEEEEEeccCCCC
Q 000717 809 SAIVTLTHAASAP 821 (1334)
Q Consensus 809 ~tIIVLTK~D~Le 821 (1334)
-+=+++||.|--.
T Consensus 286 l~GiIlTKlDgtA 298 (340)
T COG0552 286 LDGIILTKLDGTA 298 (340)
T ss_pred CceEEEEecccCC
Confidence 4457789999543
No 370
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=0.29 Score=52.13 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=49.0
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEE--EEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK--EIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~--~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
+.-++++|+|..|.|||-|+...+... +. +-..+|..+. ...+.+++ .++.|+||+|-. -++
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~k-fk--DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQE-----------rFR 72 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENK-FK--DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQE-----------RFR 72 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhh-hc--ccccceeeeeecceeeeecCcEEEEEEeecccHH-----------HHH
Confidence 455899999999999999998876542 11 1123343322 11223344 368899999932 223
Q ss_pred HHHHHHhhCCCCEEEEEecCCCc
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQ 785 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~ 785 (1334)
.+.+..-. ++-..|+|-|++..
T Consensus 73 SVtRsYYR-GAAGAlLVYD~Tsr 94 (214)
T KOG0086|consen 73 SVTRSYYR-GAAGALLVYDITSR 94 (214)
T ss_pred HHHHHHhc-cccceEEEEeccch
Confidence 33222222 45556777777654
No 371
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.51 E-value=0.27 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999999974
No 372
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.50 E-value=0.13 Score=53.84 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.+.|+|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.50 E-value=0.12 Score=63.85 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.5
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcc
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKT 715 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a 715 (1334)
..=||.|||+.|+|||||++.|.|....
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~ 55 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEP 55 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4568999999999999999999998643
No 374
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=0.064 Score=57.89 Aligned_cols=118 Identities=14% Similarity=0.136 Sum_probs=70.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccC--C--CceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAF--E--PGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~--~--gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
...|+|+|.-|+||+||+-++--......... . -+|......+..+++.++.++|.-| ++.++++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgG-----------Qe~lrSl 85 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGG-----------QESLRSL 85 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCC-----------hHHHHHH
Confidence 46799999999999999977643211111111 1 1233345556667778899999776 2344455
Q ss_pred HH-HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCC
Q 000717 765 KK-FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASA 820 (1334)
Q Consensus 765 kk-aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~L 820 (1334)
++ +-..| |+++|++|+....+-......++.+... -.-..-|.+++.||-|.-
T Consensus 86 w~~yY~~~--H~ii~viDa~~~eR~~~~~t~~~~v~~~-E~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 86 WKKYYWLA--HGIIYVIDATDRERFEESKTAFEKVVEN-EKLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHHHHHHh--ceeEEeecCCCHHHHHHHHHHHHHHHHH-HHhcCCchhhhcchhhhh
Confidence 43 33444 9999999998744321233334433321 011235889999998853
No 375
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.17 E-value=0.16 Score=62.77 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
..=||+|+|+.|+|||||++.|+|...
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~ 373 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELG 373 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcc
Confidence 445899999999999999999977643
No 376
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=0.47 Score=49.85 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=63.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEE--EEEEEeCCe--EEEEEeCCCCCCCCcchhhHHHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVK--EIVGTVDGV--KIRVIDTPGLKSSGVEQGVNRKVLASI 764 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~--~~~~evdGr--kVtLIDTPGL~ds~i~d~~~ekIlreI 764 (1334)
-++-+|+|.-|||||-|+......+ +... -|+|..+. ...+++.|+ ++.|+||+|-. .++.+
T Consensus 11 ifkyiiigdmgvgkscllhqftekk-fmad--cphtigvefgtriievsgqkiklqiwdtagqe-----------rfrav 76 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKK-FMAD--CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE-----------RFRAV 76 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHH-Hhhc--CCcccceecceeEEEecCcEEEEEEeecccHH-----------HHHHH
Confidence 4678999999999999998876543 2211 13333221 112344454 67899999932 22333
Q ss_pred HHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCc-eEEEEEeccCCCCC
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWR-SAIVTLTHAASAPP 822 (1334)
Q Consensus 765 kkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K-~tIIVLTK~D~Lep 822 (1334)
.+..-+ ++-..|.|-++++...- -.+-.|+.....-.... .++++-||+|+-..
T Consensus 77 trsyyr-gaagalmvyditrrsty---nhlsswl~dar~ltnpnt~i~lignkadle~q 131 (215)
T KOG0097|consen 77 TRSYYR-GAAGALMVYDITRRSTY---NHLSSWLTDARNLTNPNTVIFLIGNKADLESQ 131 (215)
T ss_pred HHHHhc-cccceeEEEEehhhhhh---hhHHHHHhhhhccCCCceEEEEecchhhhhhc
Confidence 222222 45567778788765431 23444555432211112 23344588887543
No 377
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.12 E-value=0.17 Score=58.55 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.7
Q ss_pred cCccEEEEEeecCCChhhhhhhhc
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL 710 (1334)
++..+|-|.|.||+|||||+-.|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 567899999999999999999885
No 378
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=94.09 E-value=0.023 Score=61.38 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=64.4
Q ss_pred ccCccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeE--EEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHH
Q 000717 686 LNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSV--KEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLAS 763 (1334)
Q Consensus 686 l~~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~--~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlre 763 (1334)
+...++++|+|.-+|||||+|.+.+.. .+.-+.....-.+. ..+.......++.++||.|-.+ +..
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeE-----------fDa 84 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-----------FDA 84 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchh-----------HHH
Confidence 345689999999999999999988743 11111000000000 0111111233456788887422 122
Q ss_pred HHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 764 IKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 764 IkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
|.++.- .++.++++|..-+..-. =..++.|-.++-..-...|+++|-||.|+++.
T Consensus 85 ItkAyy-rgaqa~vLVFSTTDr~S---Fea~~~w~~kv~~e~~~IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 85 ITKAYY-RGAQASVLVFSTTDRYS---FEATLEWYNKVQKETERIPTVFVQNKIDLVED 139 (246)
T ss_pred HHHHHh-ccccceEEEEecccHHH---HHHHHHHHHHHHHHhccCCeEEeeccchhhHh
Confidence 322222 25777778765443211 01233333333333334699999999999864
No 379
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=0.37 Score=57.47 Aligned_cols=122 Identities=18% Similarity=0.277 Sum_probs=71.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhc------CCCcceec-c-CC---------CceeeEEEEEEE----------------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF------GEEKTSIH-A-FE---------PGTTSVKEIVGT---------------- 733 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL------Gee~a~Vs-s-~~---------gtTt~~~~~~~e---------------- 733 (1334)
..+--|+++|--|+||+|++-.|. |...+.+. + +. ..|+.-..++..
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 456679999999999999998775 22222221 0 10 112221222222
Q ss_pred --eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE
Q 000717 734 --VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 734 --vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
.++..+.|+||.|-+. .+...+++++.+.+--.||-+|||+|+.-...- ..-.+.+. ..+. -.-
T Consensus 179 fKke~fdvIIvDTSGRh~------qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaa---e~Qa~aFk----~~vd-vg~ 244 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHK------QEASLFEEMKQVSKAIKPDEIIFVMDASIGQAA---EAQARAFK----ETVD-VGA 244 (483)
T ss_pred HHhcCCcEEEEeCCCchh------hhHHHHHHHHHHHhhcCCCeEEEEEeccccHhH---HHHHHHHH----Hhhc-cce
Confidence 1356789999999442 245666777666555579999999998755431 12233333 2222 334
Q ss_pred EEEeccCCCCC
Q 000717 812 VTLTHAASAPP 822 (1334)
Q Consensus 812 IVLTK~D~Lep 822 (1334)
+++||.|--..
T Consensus 245 vIlTKlDGhak 255 (483)
T KOG0780|consen 245 VILTKLDGHAK 255 (483)
T ss_pred EEEEecccCCC
Confidence 55799986544
No 380
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.86 E-value=0.17 Score=61.29 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-+++|+|++|+|||||+|.|+|--
T Consensus 361 G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 361 GERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 381
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=93.85 E-value=0.14 Score=54.89 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=61.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeE----EEEEEEeCC--eEEEEEeCCCCCCCCcchhhHHHHHH
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSV----KEIVGTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLA 762 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~----~~~~~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlr 762 (1334)
.+|++|+|-+-||||+|+......+-+..++. |..+ ..+.. ..| .++.++||+|-. -++
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdp---tvgvdffarlie~-~pg~riklqlwdtagqe-----------rfr 72 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDP---TVGVDFFARLIEL-RPGYRIKLQLWDTAGQE-----------RFR 72 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCC---ccchHHHHHHHhc-CCCcEEEEEEeeccchH-----------HHH
Confidence 57999999999999999999886655544421 1111 01111 123 367899999932 233
Q ss_pred HHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceE-EEEEeccCCCC
Q 000717 763 SIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSA-IVTLTHAASAP 821 (1334)
Q Consensus 763 eIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~t-IIVLTK~D~Le 821 (1334)
.|.+..-.. .-.+|+|.|++....-..-...++.-+-..+ ...+.+ .+|-+|+|+..
T Consensus 73 sitksyyrn-svgvllvyditnr~sfehv~~w~~ea~m~~q-~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 73 SITKSYYRN-SVGVLLVYDITNRESFEHVENWVKEAAMATQ-GPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHHhhc-ccceEEEEeccchhhHHHHHHHHHHHHHhcC-CCCeeEEEEeccccchhh
Confidence 333322221 2456777777765431111122222222222 122333 34558888753
No 382
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=93.83 E-value=0.12 Score=54.28 Aligned_cols=118 Identities=19% Similarity=0.233 Sum_probs=61.1
Q ss_pred EEEEEeecCCChhhhhhhhc-----CCCccee-ccCCCc----------eeeEEEEE-------------------EEeC
Q 000717 691 NILVLGKTGVGKSATINSIF-----GEEKTSI-HAFEPG----------TTSVKEIV-------------------GTVD 735 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLL-----Gee~a~V-ss~~gt----------Tt~~~~~~-------------------~evd 735 (1334)
-++|.|-.|+|||||||.|+ +.+.+.+ ..++.. ........ ....
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~ 81 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREY 81 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhc
Confidence 36899999999999999999 2322222 222100 00011100 0011
Q ss_pred --CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEE
Q 000717 736 --GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVT 813 (1334)
Q Consensus 736 --GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIV 813 (1334)
.-.+.||-|.|+.++.. . ++. -...-..+..+.++.|+|+..+... .+ +...+. ......=+||
T Consensus 82 ~~~~d~IiIE~sG~a~p~~---l---~~~-~~~~~~~~~~~~iI~vVDa~~~~~~-~~--~~~~~~----~Qi~~ADvIv 147 (178)
T PF02492_consen 82 EERPDRIIIETSGLADPAP---L---ILQ-DPPLKEDFRLDSIITVVDATNFDEL-EN--IPELLR----EQIAFADVIV 147 (178)
T ss_dssp HGC-SEEEEEEECSSGGGG---H---HHH-SHHHHHHESESEEEEEEEGTTHGGH-TT--HCHHHH----HHHCT-SEEE
T ss_pred CCCcCEEEECCccccccch---h---hhc-cccccccccccceeEEecccccccc-cc--chhhhh----hcchhcCEEE
Confidence 23578999999876531 1 111 1112223456889999998765321 11 112222 2223455899
Q ss_pred EeccCCCCC
Q 000717 814 LTHAASAPP 822 (1334)
Q Consensus 814 LTK~D~Lep 822 (1334)
+||+|.+++
T Consensus 148 lnK~D~~~~ 156 (178)
T PF02492_consen 148 LNKIDLVSD 156 (178)
T ss_dssp EE-GGGHHH
T ss_pred EeccccCCh
Confidence 999998653
No 383
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.81 E-value=0.18 Score=47.76 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
...++|.|++|+|||++++.+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 384
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.68 E-value=0.029 Score=57.84 Aligned_cols=55 Identities=25% Similarity=0.439 Sum_probs=33.8
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
.|+|+|++|+||||+++.|.+..........-+|+... .....+..+.++++..+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~--~g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPR--PGEVDGVDYFFVSKEEF 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCC--CCCcCCcEEEEecHHHH
Confidence 58999999999999999999864332222212233221 22344566666665554
No 385
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.67 E-value=0.48 Score=49.22 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.7
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.=.++|+|++|+|||||++.|.|...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34689999999999999999999743
No 386
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=0.21 Score=59.00 Aligned_cols=136 Identities=16% Similarity=0.139 Sum_probs=75.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcC------CCcceeccC------C-CceeeEEEEE--E--------E------------
Q 000717 689 TLNILVLGKTGVGKSATINSIFG------EEKTSIHAF------E-PGTTSVKEIV--G--------T------------ 733 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLG------ee~a~Vss~------~-gtTt~~~~~~--~--------e------------ 733 (1334)
.+|++++|-.-+|||||+--|.. ..++...-+ . +.|. ++... + .
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTS-sis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTS-SISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCccc-ccchhcccccccccccchhhcccHHHHHh
Confidence 58999999999999999988762 222222111 1 1121 11110 0 0
Q ss_pred eCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEE
Q 000717 734 VDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVT 813 (1334)
Q Consensus 734 vdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIV 813 (1334)
...+-+++||.+|-.+- ++.....+...-||..++|+.++..... .-+.-|..+. ....|..|+
T Consensus 246 ~SSKlvTfiDLAGh~kY----------~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~-----AL~iPfFvl 309 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKY----------QKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIA-----ALNIPFFVL 309 (591)
T ss_pred hhcceEEEeecccchhh----------heeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHH-----HhCCCeEEE
Confidence 01235789999985421 1111122333348988888888765432 1233333333 234799999
Q ss_pred EeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhcc
Q 000717 814 LTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVG 852 (1334)
Q Consensus 814 LTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgG 852 (1334)
+||.|+..+. .++.-+++ +..++.+.+.
T Consensus 310 vtK~Dl~~~~-------~~~~tv~~----l~nll~~~Gc 337 (591)
T KOG1143|consen 310 VTKMDLVDRQ-------GLKKTVKD----LSNLLAKAGC 337 (591)
T ss_pred EEeeccccch-------hHHHHHHH----HHHHHhhcCc
Confidence 9999998763 34444433 4455555543
No 387
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.28 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 388
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.58 E-value=0.12 Score=50.45 Aligned_cols=75 Identities=21% Similarity=0.209 Sum_probs=55.0
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
..|++||++|.+.+.+..+..+..++++. +.|+++++ ||+|....... ...++++|+.+
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~------~~piiiv~----nK~D~~~~~~~---------~~~~~~~~~~~-- 134 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS------KKPVILVV----NKVDNIKEEDE---------AAEFYSLGFGE-- 134 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc------CCCEEEEE----ECcccCChHHH---------HHHHHhcCCCC--
Confidence 56789999999999988888888888755 47899988 88885432111 12235666643
Q ss_pred hhhhhhhhcccccccCCchhhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLF 666 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl 666 (1334)
++.+|+..|.|+.+++
T Consensus 135 ------~~~~Sa~~~~gv~~l~ 150 (157)
T cd01894 135 ------PIPISAEHGRGIGDLL 150 (157)
T ss_pred ------eEEEecccCCCHHHHH
Confidence 3689999999988883
No 389
>PRK09866 hypothetical protein; Provisional
Probab=93.55 E-value=0.054 Score=67.84 Aligned_cols=89 Identities=11% Similarity=0.018 Sum_probs=58.3
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHH---HHHHHHHHHHHHHHHHHhcCCC
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKT---KLEKLQHLRVKFLRLVHRLGYS 641 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke---~leKlq~I~~kF~rl~~RLGls 641 (1334)
.+|++||+||+..+++..|+.++..+++.+. +.|+++++ ||+|..++ ..+.+.. .+...+.+.++.
T Consensus 258 eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K----~~PVILVV----NKIDl~dreeddkE~Lle---~V~~~L~q~~i~ 326 (741)
T PRK09866 258 RASAVLAVLDYTQLKSISDEEVREAILAVGQ----SVPLYVLV----NKFDQQDRNSDDADQVRA---LISGTLMKGCIT 326 (741)
T ss_pred hCCEEEEEEeCCCCCChhHHHHHHHHHhcCC----CCCEEEEE----EcccCCCcccchHHHHHH---HHHHHHHhcCCC
Confidence 6789999999999999999999999887621 14999998 77775321 0122221 111111233332
Q ss_pred CcchhhhhhhhcccccccCCchhhhcHHHHH
Q 000717 642 PEDSLVGQVLHRLSLIAGRQTGQLFSLDAAK 672 (1334)
Q Consensus 642 p~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~ 672 (1334)
. .-++++||..|.|+..|+ +.+.
T Consensus 327 f------~eIfPVSAlkG~nid~LL--deI~ 349 (741)
T PRK09866 327 P------QQIFPVSSMWGYLANRAR--HELA 349 (741)
T ss_pred C------ceEEEEeCCCCCCHHHHH--HHHH
Confidence 2 136899999999999884 4444
No 390
>PTZ00099 rab6; Provisional
Probab=93.41 E-value=0.45 Score=50.16 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=44.2
Q ss_pred EEeCC--eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcc-cCCc
Q 000717 732 GTVDG--VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGT-QIWR 808 (1334)
Q Consensus 732 ~evdG--rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~-ea~K 808 (1334)
..+++ .++.|+||||..... .....++. .+|++|+|.+++....- ..+..++..++.. ....
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~----------~~~~~~~~--~ad~~ilv~D~t~~~sf---~~~~~w~~~i~~~~~~~~ 86 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFR----------SLIPSYIR--DSAAAIVVYDITNRQSF---ENTTKWIQDILNERGKDV 86 (176)
T ss_pred EEECCEEEEEEEEECCChHHhh----------hccHHHhC--CCcEEEEEEECCCHHHH---HHHHHHHHHHHHhcCCCC
Confidence 34444 468899999964321 11122333 57999999998874321 1123344333321 1346
Q ss_pred eEEEEEeccCCCC
Q 000717 809 SAIVTLTHAASAP 821 (1334)
Q Consensus 809 ~tIIVLTK~D~Le 821 (1334)
++|||.||.|+..
T Consensus 87 piilVgNK~DL~~ 99 (176)
T PTZ00099 87 IIALVGNKTDLGD 99 (176)
T ss_pred eEEEEEECccccc
Confidence 7899999999753
No 391
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=0.4 Score=56.20 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=68.8
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCc---------cee--ccCCCc-eeeEEEE----------EEEeC------CeE
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEK---------TSI--HAFEPG-TTSVKEI----------VGTVD------GVK 738 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~---------a~V--ss~~gt-Tt~~~~~----------~~evd------Grk 738 (1334)
+..++|-++|.---|||||..+|.|--- .++ -.++.+ -..|... ....+ -|+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 3579999999999999999999998311 000 000000 0011100 01111 267
Q ss_pred EEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC-CCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEecc
Q 000717 739 IRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC-APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHA 817 (1334)
Q Consensus 739 VtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc-gpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~ 817 (1334)
+.|||.||-. -.+..+ ++-. =-|..|+|+.+....-..|-..-|-.+. +.| -+++|||-||.
T Consensus 88 VSfVDaPGHe----------~LMATM---LsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iig---ik~iiIvQNKI 150 (415)
T COG5257 88 VSFVDAPGHE----------TLMATM---LSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIG---IKNIIIVQNKI 150 (415)
T ss_pred EEEeeCCchH----------HHHHHH---hcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhc---cceEEEEeccc
Confidence 8999999941 111111 2210 0278889998887654444444443332 344 37999999999
Q ss_pred CCCCC
Q 000717 818 ASAPP 822 (1334)
Q Consensus 818 D~Lep 822 (1334)
|++..
T Consensus 151 DlV~~ 155 (415)
T COG5257 151 DLVSR 155 (415)
T ss_pred ceecH
Confidence 99865
No 392
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.35 E-value=0.79 Score=46.44 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=54.6
Q ss_pred EEEeecCCChhhhhhhhcC------CCcceecc-CCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHH
Q 000717 693 LVLGKTGVGKSATINSIFG------EEKTSIHA-FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 693 vLVGkpGVGKSSLINSLLG------ee~a~Vss-~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIk 765 (1334)
+.-++.|+|||++--.|.- .....+.. ...... ...+.|||||+.... . ..
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~----------~yd~VIiD~p~~~~~--------~----~~ 61 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL----------DYDYIIIDTGAGISD--------N----VL 61 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC----------CCCEEEEECCCCCCH--------H----HH
Confidence 4557899999998655532 11111111 111100 156799999985421 1 11
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAA 818 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D 818 (1334)
.++.. .|.++++++.+..... .-..+++.+.+.. ...++.+|+|+++
T Consensus 62 ~~l~~--aD~vviv~~~~~~s~~-~~~~~l~~l~~~~---~~~~~~lVvN~~~ 108 (139)
T cd02038 62 DFFLA--ADEVIVVTTPEPTSIT-DAYALIKKLAKQL---RVLNFRVVVNRAE 108 (139)
T ss_pred HHHHh--CCeEEEEcCCChhHHH-HHHHHHHHHHHhc---CCCCEEEEEeCCC
Confidence 23443 3899999888755432 1134555554322 2356789999987
No 393
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=93.33 E-value=0.11 Score=55.99 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=57.5
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCc-eEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSR-LATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kp-VvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
.+|.+||+||+..|+++.++++...+++. ++| +++++ ||.|...+ .+..+.+..++...+..+|+.+.
T Consensus 88 ~~D~~ilVvda~~g~~~~~~~~~~~~~~~------~~~~iIvvi----NK~D~~~~-~~~~~~~~~~i~~~l~~~g~~~~ 156 (195)
T cd01884 88 QMDGAILVVSATDGPMPQTREHLLLARQV------GVPYIVVFL----NKADMVDD-EELLELVEMEVRELLSKYGFDGD 156 (195)
T ss_pred hCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCcEEEEE----eCCCCCCc-HHHHHHHHHHHHHHHHHhccccc
Confidence 67899999999999999998888777655 345 66777 77775211 11223344456666788898544
Q ss_pred chhhhhhhhcccccccCCch
Q 000717 644 DSLVGQVLHRLSLIAGRQTG 663 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG~Gi~ 663 (1334)
+.. +.++||.+|.+..
T Consensus 157 ~v~----iipiSa~~g~n~~ 172 (195)
T cd01884 157 NTP----IVRGSALKALEGD 172 (195)
T ss_pred CCe----EEEeeCccccCCC
Confidence 322 3579999998753
No 394
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.23 E-value=0.47 Score=42.57 Aligned_cols=72 Identities=26% Similarity=0.221 Sum_probs=42.4
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkc 771 (1334)
|++.|+.|+||||+.+.|...-.. . +.. . ...+ .+.++|+|+....... . ....+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----~-g~~--v----~~~~--d~iivD~~~~~~~~~~------~---~~~~~~-- 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----R-GKR--V----LLID--DYVLIDTPPGLGLLVL------L---CLLALL-- 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----C-CCe--E----EEEC--CEEEEeCCCCccchhh------h---hhhhhh--
Confidence 678899999999999988653211 0 100 0 0111 6799999997653210 0 111222
Q ss_pred CCCEEEEEecCCCccC
Q 000717 772 APDIVLYVDRLDSQTR 787 (1334)
Q Consensus 772 gpDVVLLVIDad~~t~ 787 (1334)
..|.++++++.+....
T Consensus 58 ~~~~vi~v~~~~~~~~ 73 (99)
T cd01983 58 AADLVIIVTTPEALAV 73 (99)
T ss_pred hCCEEEEecCCchhhH
Confidence 3588888877765543
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.13 E-value=0.15 Score=53.14 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.-.++|+|++|+|||||++.|.|...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34689999999999999999999743
No 396
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.10 E-value=0.19 Score=50.58 Aligned_cols=55 Identities=15% Similarity=0.100 Sum_probs=39.9
Q ss_pred HHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 761 LASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 761 lreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
++++++.+.. .|++|+|+|+..+... .+..+.+++.... ..++.|+|+||+|+++
T Consensus 2 ~~~~~~~i~~--aD~vl~ViD~~~p~~~-~~~~l~~~l~~~~---~~k~~iivlNK~DL~~ 56 (141)
T cd01857 2 WRQLWRVVER--SDIVVQIVDARNPLLF-RPPDLERYVKEVD---PRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHHhh--CCEEEEEEEccCCccc-CCHHHHHHHHhcc---CCCcEEEEEechhcCC
Confidence 3456677775 4999999998765543 4667777776431 3579999999999864
No 397
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.04 E-value=0.42 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhhhhhhhcC
Q 000717 690 LNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLG 711 (1334)
-+++|+|+.|+|||||+.+|.+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4799999999999999999974
No 398
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.93 E-value=0.063 Score=54.49 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=32.3
Q ss_pred EEEEeecCCChhhhhhhhcCCCcceec-cCCCceeeEEEEEEEeCCeEEEEEeCCCC
Q 000717 692 ILVLGKTGVGKSATINSIFGEEKTSIH-AFEPGTTSVKEIVGTVDGVKIRVIDTPGL 747 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGee~a~Vs-s~~gtTt~~~~~~~evdGrkVtLIDTPGL 747 (1334)
|+|+|++|+||||+++.|......... ....+|+... ..+.+|..+.++|...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~--~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPR--PGEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCC--CCccCCceeEEeCHHHH
Confidence 689999999999999999976321111 1112233221 22345667777764443
No 399
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=92.81 E-value=0.74 Score=55.02 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=67.3
Q ss_pred cCccEEEEEeecCCChhhhhhhhc-CCCcc---eeccC---------CCceeeEE-EEEEEeC-----------------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF-GEEKT---SIHAF---------EPGTTSVK-EIVGTVD----------------- 735 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL-Gee~a---~Vss~---------~gtTt~~~-~~~~evd----------------- 735 (1334)
+..+.+.++|.-+.|||||.-+|. |+..- .+..+ .+-|.+.. ...+.-+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 457899999999999999998875 32100 00000 01111111 1111111
Q ss_pred -----CeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceE
Q 000717 736 -----GVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSA 810 (1334)
Q Consensus 736 -----GrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~t 810 (1334)
++-+.||||-|-. .+..-.|+..+. .++|..++++-++..... .-+.-|..+ -....|+
T Consensus 195 vv~~aDklVsfVDtvGHE---------pwLrTtirGL~g-qk~dYglLvVaAddG~~~-~tkEHLgi~-----~a~~lPv 258 (527)
T COG5258 195 VVKRADKLVSFVDTVGHE---------PWLRTTIRGLLG-QKVDYGLLVVAADDGVTK-MTKEHLGIA-----LAMELPV 258 (527)
T ss_pred hhhhcccEEEEEecCCcc---------HHHHHHHHHHhc-cccceEEEEEEccCCcch-hhhHhhhhh-----hhhcCCE
Confidence 2446788888842 222233444443 368999999988865432 111122111 1244799
Q ss_pred EEEEeccCCCCC
Q 000717 811 IVTLTHAASAPP 822 (1334)
Q Consensus 811 IIVLTK~D~Lep 822 (1334)
|+|+||+|..+.
T Consensus 259 iVvvTK~D~~~d 270 (527)
T COG5258 259 IVVVTKIDMVPD 270 (527)
T ss_pred EEEEEecccCcH
Confidence 999999999875
No 400
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=92.69 E-value=0.1 Score=57.19 Aligned_cols=90 Identities=11% Similarity=0.005 Sum_probs=57.3
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
..|.+|++||+..|+++.|.++..+++.. +.|+++++ ||+|...+ ..+......+...+.+.|.....
T Consensus 109 ~~D~~llVvda~~g~~~~d~~~l~~l~~~------~ip~ivvv----NK~D~~~~--~~~~~~~~~l~~~L~~~g~~~~p 176 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTKEHLGLALAL------NIPVFVVV----TKIDLAPA--NILQETLKDLKRILKVPGVRKLP 176 (224)
T ss_pred CCCEEEEEEECCCCCcHHHHHHHHHHHHc------CCCEEEEE----ECccccCH--HHHHHHHHHHHHHhcCCCccccc
Confidence 56889999999999999999999998866 57888888 88875221 12223333333334444432100
Q ss_pred h--------h-------h--hhhhhcccccccCCchhhh
Q 000717 645 S--------L-------V--GQVLHRLSLIAGRQTGQLF 666 (1334)
Q Consensus 645 ~--------v-------L--aQvL~rLSA~hG~Gi~dLl 666 (1334)
. + . .-=++.+|+..|.|+..|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~ 215 (224)
T cd04165 177 VPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLH 215 (224)
T ss_pred eeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHH
Confidence 0 0 0 0013557999999998873
No 401
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.15 Score=62.89 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.-+++++|++|+|||||+|.|+|-..
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 45799999999999999999999654
No 402
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.61 E-value=0.55 Score=51.24 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.4
Q ss_pred cEEEEEeecCCChhhhhhhhc
Q 000717 690 LNILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLL 710 (1334)
-+++|.|+.|+|||||+++|.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 578999999999999999986
No 403
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=92.58 E-value=0.076 Score=56.63 Aligned_cols=117 Identities=14% Similarity=0.127 Sum_probs=68.6
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCCccee---ccC--CCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHH
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSI---HAF--EPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVL 761 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee~a~V---ss~--~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIl 761 (1334)
...++|+++|.--||||||+=..+-. +|.. +.. ...++.. ...-....+.|+||+|-.+..
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~En-kFn~kHlsTlQASF~~kk~---n~ed~ra~L~IWDTAGQErfH---------- 76 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVEN-KFNCKHLSTLQASFQNKKV---NVEDCRADLHIWDTAGQERFH---------- 76 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHh-hcchhhHHHHHHHHhhccc---ccccceeeeeeeeccchHhhh----------
Confidence 35789999999999999998655432 2211 100 0112211 111123367899999953321
Q ss_pred HHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 762 ASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 762 reIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
.+ .-|--.+.+..|+|.|++....-..-+..+..|+..+|.+ .-++||-||.|+-+
T Consensus 77 -AL-GPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 77 -AL-GPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEE 132 (218)
T ss_pred -cc-CceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHH
Confidence 11 0112225688899988876543212345666677777754 36788999999643
No 404
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=92.55 E-value=0.084 Score=51.91 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.7
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.-.++|+|++|+|||||++.|+|...
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCEEEEEccCCCccccceeeeccccc
Confidence 34689999999999999999999743
No 405
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.54 E-value=0.16 Score=68.31 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.5
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
.-||-||||||+|||||+++|+.-
T Consensus 1166 ~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1166 GEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHh
Confidence 348999999999999999999863
No 406
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=92.45 E-value=0.88 Score=52.87 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.0
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
-.+|.|--|+|||||||.|+..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3578899999999999999854
No 407
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=92.41 E-value=0.078 Score=63.93 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=53.2
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCCcceecc------CCCceeeEEEEEEEeCC--eEEEEE-----eCCCCCCCCcch
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEEKTSIHA------FEPGTTSVKEIVGTVDG--VKIRVI-----DTPGLKSSGVEQ 754 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee~a~Vss------~~gtTt~~~~~~~evdG--rkVtLI-----DTPGL~ds~i~d 754 (1334)
..-+++|+|.+|+|||||+|.|.+.....+.. ....+++.... ...+ .+-.+| |+||++....
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~--~l~~~l~~tvvV~atsddsp~~R~~~~-- 231 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEK--NLGGDLENTVIVVATSDDSPLMRKYGA-- 231 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHH--HhcCcccceEEEEECCCCCHHHhhHHH--
Confidence 45589999999999999999998753321111 11111111110 1112 134677 8888765421
Q ss_pred hhHHHHHHHHHHHHhhCCCCEEEEEecCCCcc
Q 000717 755 GVNRKVLASIKKFTKKCAPDIVLYVDRLDSQT 786 (1334)
Q Consensus 755 ~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t 786 (1334)
..--.+..++...+-||+|++.+++++.
T Consensus 232 ----~~a~~iAEyFrd~G~~Vll~~DslTr~A 259 (434)
T PRK08472 232 ----FCAMSVAEYFKNQGLDVLFIMDSVTRFA 259 (434)
T ss_pred ----HHHHHHHHHHHHcCCCEEEecccchHHH
Confidence 1123344555555789999998887664
No 408
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.26 E-value=0.057 Score=58.69 Aligned_cols=54 Identities=28% Similarity=0.469 Sum_probs=36.0
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTP 745 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTP 745 (1334)
.+-|+|.|++||||||++..|+.......+ ...||+... .++++|..+.||+.-
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~~l~~S-VS~TTR~pR--~gEv~G~dY~Fvs~~ 57 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDDKLRFS-VSATTRKPR--PGEVDGVDYFFVTEE 57 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhcCeEEE-EEeccCCCC--CCCcCCceeEeCCHH
Confidence 355899999999999999999987733322 223344332 345667777666543
No 409
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=92.21 E-value=1.4 Score=47.66 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.2
Q ss_pred EEEEEeecCCChhhhhhhhcC
Q 000717 691 NILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLG 711 (1334)
.++|+|++|+|||||+++|.+
T Consensus 30 ~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 30 LFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHhee
Confidence 588999999999999999873
No 410
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=92.20 E-value=0.12 Score=55.45 Aligned_cols=86 Identities=12% Similarity=0.089 Sum_probs=56.0
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||+||+..|+...++.+..+++..+ .+++++++ ||.|......+....+..++..++..+|+.+.
T Consensus 100 ~ad~~llVvD~~~~~~~~~~~~~~~~~~~~-----~~~iIvvi----NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 169 (208)
T cd04166 100 TADLAILLVDARKGVLEQTRRHSYILSLLG-----IRHVVVAV----NKMDLVDYSEEVFEEIVADYLAFAAKLGIEDI- 169 (208)
T ss_pred hCCEEEEEEECCCCccHhHHHHHHHHHHcC-----CCcEEEEE----EchhcccCCHHHHHHHHHHHHHHHHHcCCCCc-
Confidence 678999999999998877766655554331 24567677 88885321112233344555556678887421
Q ss_pred hhhhhhhhcccccccCCchhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQL 665 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dL 665 (1334)
-+.++||.+|.|+.+.
T Consensus 170 -----~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 170 -----TFIPISALDGDNVVSR 185 (208)
T ss_pred -----eEEEEeCCCCCCCccC
Confidence 1468999999998765
No 411
>PRK13695 putative NTPase; Provisional
Probab=92.08 E-value=0.68 Score=48.18 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
++|+|+|.+|+|||||+..|.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987653
No 412
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.06 E-value=0.41 Score=57.77 Aligned_cols=121 Identities=21% Similarity=0.307 Sum_probs=69.5
Q ss_pred cCccEEEEEeecCCChhhhhhhhc------CCCcceecc--CCCce----------eeEEEEE-----------------
Q 000717 687 NFTLNILVLGKTGVGKSATINSIF------GEEKTSIHA--FEPGT----------TSVKEIV----------------- 731 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLL------Gee~a~Vss--~~gtT----------t~~~~~~----------------- 731 (1334)
..+..|+++|--|+||+|+.-.|. |.....++. +.|.- ..+..+.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence 357889999999999999987664 332222211 10000 0000000
Q ss_pred EEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEE
Q 000717 732 GTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAI 811 (1334)
Q Consensus 732 ~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tI 811 (1334)
....+..+.||||+|=.. ..+..+.+++..-....||=+|||+|+..... -....+.+.+.+ .-+=
T Consensus 178 ak~~~~DvvIvDTAGRl~------ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---A~~~A~aF~e~l-----~itG 243 (451)
T COG0541 178 AKEEGYDVVIVDTAGRLH------IDEELMDELKEIKEVINPDETLLVVDAMIGQD---AVNTAKAFNEAL-----GITG 243 (451)
T ss_pred HHHcCCCEEEEeCCCccc------ccHHHHHHHHHHHhhcCCCeEEEEEecccchH---HHHHHHHHhhhc-----CCce
Confidence 001245789999999432 23556666655444456899999998875542 234454444332 2345
Q ss_pred EEEeccCCCC
Q 000717 812 VTLTHAASAP 821 (1334)
Q Consensus 812 IVLTK~D~Le 821 (1334)
|++||.|--.
T Consensus 244 vIlTKlDGda 253 (451)
T COG0541 244 VILTKLDGDA 253 (451)
T ss_pred EEEEcccCCC
Confidence 6789999643
No 413
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=92.06 E-value=0.94 Score=47.16 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.-.++|+|++|+|||||++.|+|...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44689999999999999999999743
No 414
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=92.04 E-value=0.82 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.6
Q ss_pred CccEEEEEeecCCChhhhhhhhcC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
...|++|+|++.+||||+...|++
T Consensus 102 ~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 102 YGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred cCCEEEEECCCccchHHHHHHHHH
Confidence 468999999999999999998874
No 415
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.00 E-value=1 Score=48.63 Aligned_cols=117 Identities=19% Similarity=0.410 Sum_probs=62.1
Q ss_pred CccEEEEEeecCCChhhhhhhhcC---CCcceeccCCCceeeEEEEEEEeCCe--EEEEEeCC----------CCCCCCc
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG---EEKTSIHAFEPGTTSVKEIVGTVDGV--KIRVIDTP----------GLKSSGV 752 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG---ee~a~Vss~~gtTt~~~~~~~evdGr--kVtLIDTP----------GL~ds~i 752 (1334)
..++|.|.|+|||||||++-.|.. .+.+.++.+ -|..+. .+|+ -+.|+|+. |+....+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR-----~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rv 76 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVR-----EGGKRIGFKIVDLATGEEGILARVGFSRPRV 76 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE--Eeeeee-----cCCeEeeeEEEEccCCceEEEEEcCCCCccc
Confidence 468999999999999999987753 222333321 111111 1222 23555555 1222211
Q ss_pred c------hhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccC
Q 000717 753 E------QGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAA 818 (1334)
Q Consensus 753 ~------d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D 818 (1334)
. +..++-....+++++.. +|+++ +..+..... .-..+.+.+.+++. ..+|+|.++-+-+
T Consensus 77 GkY~V~v~~le~i~~~al~rA~~~--aDvII-IDEIGpMEl--ks~~f~~~ve~vl~--~~kpliatlHrrs 141 (179)
T COG1618 77 GKYGVNVEGLEEIAIPALRRALEE--ADVII-IDEIGPMEL--KSKKFREAVEEVLK--SGKPLIATLHRRS 141 (179)
T ss_pred ceEEeeHHHHHHHhHHHHHHHhhc--CCEEE-Eecccchhh--ccHHHHHHHHHHhc--CCCcEEEEEeccc
Confidence 1 12223345556666553 46554 444443322 24567777777765 3478777776554
No 416
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.99 E-value=0.099 Score=55.95 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=35.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPG 746 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPG 746 (1334)
++-|+|+|++|+||||+++.|+.......... ++||+.. -..+.+|..+.+|+..-
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v-~~TTR~~-r~gE~~G~dY~fvs~~~ 59 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSI-SCTTRAP-RPGDEEGKTYFFLTIEE 59 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCcccccc-CccCCCC-CCCCCCCceeEeCCHHH
Confidence 45699999999999999999987643222222 3444322 23345566666664443
No 417
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=91.92 E-value=0.21 Score=59.48 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=74.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCcce-----e------c------cCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCc
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEKTS-----I------H------AFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGV 752 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~a~-----V------s------s~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i 752 (1334)
.+|-|+....+||+|+...|+--..+. + . ...+.|.......+.|.|.+|.+|||||-.+...
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 468899999999999999886211110 1 1 1125566666778889999999999999887754
Q ss_pred chhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCC
Q 000717 753 EQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAP 821 (1334)
Q Consensus 753 ~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Le 821 (1334)
. +.+|+.- .|.++.|++++..... |.+.+.+.- .....|.+..+||.|.+.
T Consensus 118 e----------verclrv--ldgavav~dasagve~-qtltvwrqa-----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 118 E----------VERCLRV--LDGAVAVFDASAGVEA-QTLTVWRQA-----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred E----------HHHHHHH--hcCeEEEEeccCCccc-ceeeeehhc-----cccCCchhhhhhhhhhhh
Confidence 3 2244442 3777888888876542 333333221 123357788889999764
No 418
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.91 E-value=0.1 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.4
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
..+..|+|+|++|+||||+++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35677899999999999999999754
No 419
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.90 E-value=0.11 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
.|+|.|.||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999753
No 420
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=91.81 E-value=0.28 Score=67.13 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
-+|+|+|+||+|||||++.|++-
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999974
No 421
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=91.81 E-value=0.29 Score=51.29 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=53.9
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHH--HHHHHHHHHHHHHHHHHHhcCCCC
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEK--TKLEKLQHLRVKFLRLVHRLGYSP 642 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~k--e~leKlq~I~~kF~rl~~RLGlsp 642 (1334)
..|.++|++|...|.+..+.+...+.+.. ++|+++++ ||+|... ......+.+...+...+.+.+...
T Consensus 91 ~~d~vi~VvD~~~~~~~~~~~~~~~~~~~------~~~~iiv~----NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 160 (192)
T cd01889 91 IIDLMLLVVDATKGIQTQTAECLVIGEIL------CKKLIVVL----NKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN 160 (192)
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHHHc------CCCEEEEE----ECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence 46789999999998877665433332222 46888888 8887431 111223333333333333444321
Q ss_pred cchhhhhhhhcccccccCCchhhhcHHHHHH
Q 000717 643 EDSLVGQVLHRLSLIAGRQTGQLFSLDAAKT 673 (1334)
Q Consensus 643 ~N~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~ 673 (1334)
. -++++||.+|.|+.+| ++.+..
T Consensus 161 ~------~vi~iSa~~g~gi~~L--~~~l~~ 183 (192)
T cd01889 161 S------PIIPVSAKPGGGEAEL--GKDLNN 183 (192)
T ss_pred C------CEEEEeccCCCCHHHH--HHHHHh
Confidence 0 1478999999999988 344443
No 422
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.77 E-value=0.092 Score=59.20 Aligned_cols=25 Identities=40% Similarity=0.597 Sum_probs=21.9
Q ss_pred EEEEEeecCCChhhhhhhhcCCCcc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEKT 715 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~a 715 (1334)
-|+|+|++|||||||+|.|.|-...
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4899999999999999999986543
No 423
>PTZ00243 ABC transporter; Provisional
Probab=91.77 E-value=0.16 Score=69.49 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.1
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
=+|+|+|+||+|||||++.|++-
T Consensus 1337 ekVaIVGrTGSGKSTLl~lLlrl 1359 (1560)
T PTZ00243 1337 EKVGIVGRTGSGKSTLLLTFMRM 1359 (1560)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.64 E-value=0.5 Score=48.19 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
-.++|+|++|+|||||++.|.|..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
No 425
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.47 E-value=0.14 Score=54.09 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=22.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
...|+|+|++|+|||||++.|.+..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4569999999999999999998864
No 426
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.31 E-value=1.7 Score=41.15 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=39.3
Q ss_pred EEEEe-ecCCChhhhhhhhcCCCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhh
Q 000717 692 ILVLG-KTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKK 770 (1334)
Q Consensus 692 IvLVG-kpGVGKSSLINSLLGee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkk 770 (1334)
|+++| +.|+||||+.-.|.-.-. . .+...-+..... ...+.|||||+.... . ....+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~-~----~~~~vl~~d~d~---~~d~viiD~p~~~~~--------~----~~~~l~~ 61 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALA-R----RGKRVLLIDLDP---QYDYIIIDTPPSLGL--------L----TRNALAA 61 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHH-h----CCCcEEEEeCCC---CCCEEEEeCcCCCCH--------H----HHHHHHH
Confidence 56676 789999998765542110 0 000000000000 146799999996532 1 1133443
Q ss_pred CCCCEEEEEecCCCcc
Q 000717 771 CAPDIVLYVDRLDSQT 786 (1334)
Q Consensus 771 cgpDVVLLVIDad~~t 786 (1334)
.|.++++++.+...
T Consensus 62 --ad~viv~~~~~~~s 75 (104)
T cd02042 62 --ADLVLIPVQPSPLD 75 (104)
T ss_pred --CCEEEEeccCCHHH
Confidence 38899988776543
No 427
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=91.28 E-value=0.48 Score=56.68 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=20.9
Q ss_pred cCccEEEEEeecCCChhhhhhhhcC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
....+|||+|..++|||||.+-|++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHH
Confidence 4578999999999999998866553
No 428
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=91.22 E-value=0.22 Score=68.09 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEEeecCCChhhhhhhhcCCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee 713 (1334)
+|+|+|++|+|||||++.|++-.
T Consensus 1247 kvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271 1247 RVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred EEEEECCCCCCHHHHHHHHhhhc
Confidence 79999999999999999999853
No 429
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=91.02 E-value=1.3 Score=49.12 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=15.4
Q ss_pred EEEEEeecCCChhhhhhhh
Q 000717 691 NILVLGKTGVGKSATINSI 709 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSL 709 (1334)
.|+|.||.||||||+.-.|
T Consensus 2 ~i~v~gKGGvGKTT~a~nL 20 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNL 20 (267)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 5888999999999966443
No 430
>PRK15494 era GTPase Era; Provisional
Probab=90.86 E-value=0.27 Score=57.21 Aligned_cols=86 Identities=13% Similarity=0.083 Sum_probs=55.1
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||+||...+++..+..+...++.. +.|+++++ ||+|-..+ .+..+ ...+.+.+..
T Consensus 131 ~aDvil~VvD~~~s~~~~~~~il~~l~~~------~~p~IlVi----NKiDl~~~---~~~~~----~~~l~~~~~~--- 190 (339)
T PRK15494 131 SADLVLLIIDSLKSFDDITHNILDKLRSL------NIVPIFLL----NKIDIESK---YLNDI----KAFLTENHPD--- 190 (339)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhc------CCCEEEEE----EhhcCccc---cHHHH----HHHHHhcCCC---
Confidence 57899999999998888877666666543 35677777 88885321 11111 1112222211
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTAL 676 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~ 676 (1334)
..++++||..|.|+.+| ++.+...++
T Consensus 191 ----~~i~~iSAktg~gv~eL--~~~L~~~l~ 216 (339)
T PRK15494 191 ----SLLFPISALSGKNIDGL--LEYITSKAK 216 (339)
T ss_pred ----cEEEEEeccCccCHHHH--HHHHHHhCC
Confidence 12578999999999998 466665554
No 431
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=3.4 Score=49.13 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
.-|-++|.-|+|||||+|.|.+.
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 45789999999999999999875
No 432
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=90.62 E-value=1.3 Score=45.25 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=36.1
Q ss_pred EEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEecc
Q 000717 738 KIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHA 817 (1334)
Q Consensus 738 kVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~ 817 (1334)
.+.|||||+-... . ....+. ..|.+|++++.+..... .-..+++.+.. .......+|+|++
T Consensus 64 d~viiD~p~~~~~--------~----~~~~l~--~ad~viiv~~~~~~s~~-~~~~~~~~~~~----~~~~~~~iv~N~~ 124 (179)
T cd02036 64 DYILIDSPAGIER--------G----FITAIA--PADEALLVTTPEISSLR-DADRVKGLLEA----LGIKVVGVIVNRV 124 (179)
T ss_pred CEEEEECCCCCcH--------H----HHHHHH--hCCcEEEEeCCCcchHH-HHHHHHHHHHH----cCCceEEEEEeCC
Confidence 6899999975321 1 112233 24888888887754432 11234444442 1224577899998
Q ss_pred CC
Q 000717 818 AS 819 (1334)
Q Consensus 818 D~ 819 (1334)
+.
T Consensus 125 ~~ 126 (179)
T cd02036 125 RP 126 (179)
T ss_pred cc
Confidence 84
No 433
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=90.58 E-value=1.4 Score=43.01 Aligned_cols=95 Identities=16% Similarity=0.058 Sum_probs=50.3
Q ss_pred EEeecCCChhhhhhhhcC-------CCcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHH
Q 000717 694 VLGKTGVGKSATINSIFG-------EEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 694 LVGkpGVGKSSLINSLLG-------ee~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkk 766 (1334)
+-++.|+||||+.-.|.. .....+..-+.. +..+.|||||+.... . ...
T Consensus 5 ~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~------------~~D~IIiDtpp~~~~--------~----~~~ 60 (106)
T cd03111 5 IGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF------------GDDYVVVDLGRSLDE--------V----SLA 60 (106)
T ss_pred ECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC------------CCCEEEEeCCCCcCH--------H----HHH
Confidence 346799999997766532 222222111110 116799999996532 1 112
Q ss_pred HHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 767 aIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
.+.. .|.+|++++.+..... .-..+++.+.+. +.....++.+|+|+
T Consensus 61 ~l~~--aD~vlvvv~~~~~s~~-~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 61 ALDQ--ADRVFLVTQQDLPSIR-NAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHH--cCeEEEEecCChHHHH-HHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 3443 4889999887765432 123344444432 21112456677774
No 434
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.48 E-value=1.8 Score=47.96 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=58.6
Q ss_pred cEEEEEeecCCChhhhhhhhcCC-CcceeccCCCceeeEEEEEEEeCCeEEEEEeCCCCCCCCcchhhHHHHHHHHHHHH
Q 000717 690 LNILVLGKTGVGKSATINSIFGE-EKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe-e~a~Vss~~gtTt~~~~~~~evdGrkVtLIDTPGL~ds~i~d~~~ekIlreIkkaI 768 (1334)
-.++|.|+.+.||||++..|.+- -.+..+...+.. .....+-.+-++-+-+..-..... ..-..-+.+++..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~----~~~~~~~~~i~~~~~~~d~~~~~~--StF~~e~~~~~~il 105 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS----SATLSIFDSVLTRMGASDSIQHGM--STFMVELSETSHIL 105 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC----ceEEeccceEEEEecCcccccccc--chHHHHHHHHHHHH
Confidence 45799999999999999998772 222222211111 111111122112221111111111 11112344555666
Q ss_pred hhCCCCEEEEEecCCCccCCCCcH-HHHHHHHHHhcccCCceEEEEEeccC
Q 000717 769 KKCAPDIVLYVDRLDSQTRDLNDL-PLLRSITNALGTQIWRSAIVTLTHAA 818 (1334)
Q Consensus 769 kkcgpDVVLLVIDad~~t~e~qDl-~lLe~IqeiFG~ea~K~tIIVLTK~D 818 (1334)
..+...-++++..+...+.. .|. .+...+.+.+-.. ..+++|+.||--
T Consensus 106 ~~~~~~sLvllDE~~~gT~~-~d~~~i~~~il~~l~~~-~~~~~i~~TH~~ 154 (222)
T cd03287 106 SNCTSRSLVILDELGRGTST-HDGIAIAYATLHYLLEE-KKCLVLFVTHYP 154 (222)
T ss_pred HhCCCCeEEEEccCCCCCCh-hhHHHHHHHHHHHHHhc-cCCeEEEEcccH
Confidence 66555667777777666642 232 2233344333322 357888888854
No 435
>PLN03232 ABC transporter C family member; Provisional
Probab=90.36 E-value=0.97 Score=62.04 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=22.0
Q ss_pred EEEEEeecCCChhhhhhhhcCCCc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.++|+|++|+|||||++.|+|.-.
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELS 668 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 789999999999999999999743
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.20 E-value=0.18 Score=49.79 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred EEEEeecCCChhhhhhhhcCC
Q 000717 692 ILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGe 712 (1334)
|+++|.||+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999743
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=90.06 E-value=1.1 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.5
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
-++|+|++|+|||||+++|.+.
T Consensus 27 ~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 27 GILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 4689999999999999999763
No 438
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=90.04 E-value=3.8 Score=44.77 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.1
Q ss_pred EEEEEeecCCChhhhhhhhc
Q 000717 691 NILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLL 710 (1334)
-+.|+|+.|+||||++++|.
T Consensus 27 i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 27 FSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999986
No 439
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=89.98 E-value=0.17 Score=55.44 Aligned_cols=24 Identities=42% Similarity=0.576 Sum_probs=21.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
-+++|+|++|+|||||+|.|.|=.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 468999999999999999998743
No 440
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=89.95 E-value=0.3 Score=58.59 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred ccCCeEEEEEcCCCC-------CCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 000717 564 SQDGSKLFSVERPAG-------LGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVH 636 (1334)
Q Consensus 564 s~adviLFvVD~raG-------Lt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~ 636 (1334)
+|+|++||+||++.| +...+++-+-..|-.+ -+.+++|+ ||.|.-.+..++.+.+..+...+..
T Consensus 107 sqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-----i~~lIVav----NKMD~v~wde~rf~ei~~~v~~l~k 177 (428)
T COG5256 107 SQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-----IKQLIVAV----NKMDLVSWDEERFEEIVSEVSKLLK 177 (428)
T ss_pred hhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-----CceEEEEE----EcccccccCHHHHHHHHHHHHHHHH
Confidence 589999999999999 8888888765555443 23567777 8877765666777777778888888
Q ss_pred hcCCCCcchhhhhhhhcccccccCCchhh
Q 000717 637 RLGYSPEDSLVGQVLHRLSLIAGRQTGQL 665 (1334)
Q Consensus 637 RLGlsp~N~vLaQvL~rLSA~hG~Gi~dL 665 (1334)
.+|+.+.+.. +.|+|+..|.++.+.
T Consensus 178 ~~G~~~~~v~----FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 178 MVGYNPKDVP----FIPISGFKGDNLTKK 202 (428)
T ss_pred HcCCCccCCe----EEecccccCCccccc
Confidence 9999764332 459999999887544
No 441
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.94 E-value=0.4 Score=51.38 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=58.6
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC---cceeccCCCceeeEEEEEEEe-----CC----eEEEEEeCCCCCCCCcchhh
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE---KTSIHAFEPGTTSVKEIVGTV-----DG----VKIRVIDTPGLKSSGVEQGV 756 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee---~a~Vss~~gtTt~~~~~~~ev-----dG----rkVtLIDTPGL~ds~i~d~~ 756 (1334)
-++.+.+|-+||||++++-.-.... .+++. . +..-...+....- .| ..+.++||+|-.+
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsT-V-GIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER------- 79 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFIST-V-GIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER------- 79 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEE-e-ecccccceEEEeccCCCCCCcceEEEEeeeccccHHH-------
Confidence 3667889999999999986554331 11110 0 0000000111110 11 2568999999422
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhccc--CCceEEEEEeccCCCC
Q 000717 757 NRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQ--IWRSAIVTLTHAASAP 821 (1334)
Q Consensus 757 ~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~e--a~K~tIIVLTK~D~Le 821 (1334)
++.+..+.-. .+-.+|++.+++.... =+.+-.|+...--+. ...-+|+.-||+|+..
T Consensus 80 ----FRSLTTAFfR-DAMGFlLiFDlT~eqS---FLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~ 138 (219)
T KOG0081|consen 80 ----FRSLTTAFFR-DAMGFLLIFDLTSEQS---FLNVRNWLSQLQTHAYCENPDIVLCGNKADLED 138 (219)
T ss_pred ----HHHHHHHHHH-hhccceEEEeccchHH---HHHHHHHHHHHHHhhccCCCCEEEEcCccchhh
Confidence 2233222221 2346788888875432 234445554433222 1224677779999753
No 442
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=89.90 E-value=0.27 Score=49.71 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=56.6
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
..+.+||++|...+....+.+....++.. ++|+++++ ||+|...+ ..+......+...+..++.....
T Consensus 85 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~------~~~i~iv~----nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 85 VSDGAILVVDANEGVQPQTREHLRIAREG------GLPIIVAI----NKIDRVGE--EDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred hcCEEEEEEECCCCCcHHHHHHHHHHHHC------CCCeEEEE----ECCCCcch--hcHHHHHHHHHHHHccccccchh
Confidence 46789999999998887777766666543 57899988 88875421 11122222233333444431000
Q ss_pred -----hhhhhhhhcccccccCCchhhhcHHHHHHH
Q 000717 645 -----SLVGQVLHRLSLIAGRQTGQLFSLDAAKTT 674 (1334)
Q Consensus 645 -----~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~ 674 (1334)
.....-++++||.+|.|+.+++ +.+...
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~--~~l~~~ 185 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELL--EAIVEH 185 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHH--HHHHhh
Confidence 0001114678999999998883 554443
No 443
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=89.89 E-value=4.7 Score=52.96 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=93.8
Q ss_pred ccEEEEEeecC--CChhhhhhhhcCCCcceeccCCCc--eeeEEEEEEEeCCeEEEEEeCCCCCCCCcch----------
Q 000717 689 TLNILVLGKTG--VGKSATINSIFGEEKTSIHAFEPG--TTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ---------- 754 (1334)
Q Consensus 689 ~LRIvLVGkpG--VGKSSLINSLLGee~a~Vss~~gt--Tt~~~~~~~evdGrkVtLIDTPGL~ds~i~d---------- 754 (1334)
-+-|-|+|+++ .+|++++|.+++...+........ ..++........+.++.++++-++.+...-.
T Consensus 11 vvVVGViGKS~~~~~k~~~iN~~~~~nvF~~~~~~~~~~~~~~~Ie~Yy~~e~riLyLhl~si~D~~~L~~l~~~l~~~~ 90 (895)
T PF10220_consen 11 VVVVGVIGKSSLGKGKSSLINKLLDFNVFPSQTSEPDESGNTCQIEAYYDTEERILYLHLQSILDTAILAMLCKSLSSKL 90 (895)
T ss_pred eEEEEEEeCCCcccchhhhHHHHHhcCCCCCcccccccCCCCceEEEEEcCCCCEEEEEccCcCCHHHHHHHHHHHhccC
Confidence 35677899988 667999999999887765432211 1112111122235678899999988753110
Q ss_pred ----------hhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCC-CcHHHHHHH---------HHHhcc----cCC---
Q 000717 755 ----------GVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDL-NDLPLLRSI---------TNALGT----QIW--- 807 (1334)
Q Consensus 755 ----------~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~-qDl~lLe~I---------qeiFG~----ea~--- 807 (1334)
..+...++.+.=.+.-| |+||+|..-..+.... .-.+.++.+ .+.+.. ..|
T Consensus 91 ~~~df~~~~~~~E~q~lr~LlFLFsVC--HIIIlV~p~~~FD~~y~rlFr~l~~lRqk~l~p~L~~~L~~~~~~~~w~~~ 168 (895)
T PF10220_consen 91 SPSDFHSFWKDMESQYLRMLLFLFSVC--HIIILVHPTSTFDLNYLRLFRALDMLRQKKLLPFLPDLLKDTNLPKDWISN 168 (895)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhc--eEEEEEccCceecHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhc
Confidence 00111122222223345 9999997543332110 011222222 222211 112
Q ss_pred -----ceEEEEEeccCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhccceeecCcC-cCCcccccccCcccc
Q 000717 808 -----RSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAVGDLRLMNPS-LMNPVSLVENHPACR 875 (1334)
Q Consensus 808 -----K~tIIVLTK~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcgGRy~vfNnk-d~nPveLVENIP~Cv 875 (1334)
-+++++|.+... .++...+.|.+- +.+++-.+.+.+.|-+.-..++++-+. ......|..|.++.-
T Consensus 169 gRlC~PRlLF~Fe~~~~-~~d~~~~k~~k~-e~~~kLE~~lEdQIy~iLr~~rllTn~s~~sLfalP~n~~FV~ 240 (895)
T PF10220_consen 169 GRLCSPRLLFLFERNPL-RPDGNFDKPKKR-EPIKKLEHNLEDQIYRILRKYRLLTNSSSNSLFALPANQQFVF 240 (895)
T ss_pred CCcCCCcEEEEEecCCc-ccccccccccch-HHHHHHHHHHHHHHHHHHHHcCccccCCCCcceecCCCCceEE
Confidence 148899998887 222212222232 233444556667777777777766433 223456666666543
No 444
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=89.81 E-value=1 Score=48.24 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEeecCCChhhhhhhhc
Q 000717 691 NILVLGKTGVGKSATINSIF 710 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLL 710 (1334)
+++|+|+.|+|||||+.+|.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999987
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=89.77 E-value=0.23 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.9
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
..++|+|+||+||||++..|...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 47899999999999999999875
No 446
>PLN03130 ABC transporter C family member; Provisional
Probab=89.74 E-value=0.28 Score=67.48 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.9
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
+|+|+|+||+|||||++.|++-
T Consensus 1267 kVaIVGrSGSGKSTLl~lL~rl 1288 (1622)
T PLN03130 1267 KVGIVGRTGAGKSSMLNALFRI 1288 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 8999999999999999999974
No 447
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=89.67 E-value=1.5 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
.-||+|||+.|||||||+..|+|.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 359999999999999999999996
No 448
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=89.61 E-value=0.21 Score=53.09 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999964
No 449
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=89.58 E-value=0.19 Score=56.05 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEEEeecCCChhhhhhhhcCCCc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
-++|+|++|+|||||+|.|-+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 489999999999999999977544
No 450
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.45 E-value=0.22 Score=54.01 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 451
>PLN03232 ABC transporter C family member; Provisional
Probab=89.40 E-value=0.27 Score=67.25 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
=+|+|+|+||+|||||++.|++-
T Consensus 1263 ekvaIVG~SGSGKSTL~~lL~rl 1285 (1495)
T PLN03232 1263 EKVGVVGRTGAGKSSMLNALFRI 1285 (1495)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 452
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=89.38 E-value=0.21 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.609 Sum_probs=21.9
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
...++|+|++|+|||||+++|++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999985
No 453
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=89.33 E-value=1.4 Score=52.59 Aligned_cols=88 Identities=13% Similarity=0.097 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCCCCcchhhHHHHHHHHHHHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEec
Q 000717 737 VKIRVIDTPGLKSSGVEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTH 816 (1334)
Q Consensus 737 rkVtLIDTPGL~ds~i~d~~~ekIlreIkkaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK 816 (1334)
+-|+|||.+|-.. +++...--+.-.-||.+.+++-+...... ..+.-|..- -....|+.+|+||
T Consensus 219 KviTFIDLAGHEk----------YLKTTvFGMTGH~PDf~MLMiGaNaGIiG-mTKEHLgLA-----LaL~VPVfvVVTK 282 (641)
T KOG0463|consen 219 KVITFIDLAGHEK----------YLKTTVFGMTGHMPDFTMLMIGANAGIIG-MTKEHLGLA-----LALHVPVFVVVTK 282 (641)
T ss_pred eeEEEEeccchhh----------hhheeeeccccCCCCceEEEeccccccee-ccHHhhhhh-----hhhcCcEEEEEEe
Confidence 4578999988421 11111000111237888898877765432 122222211 1244799999999
Q ss_pred cCCCCCCCCCCCCCcHHHHHHhhhHHHHHHHHHhc
Q 000717 817 AASAPPDGPSGSPLSYEIFVAQRSHVVQQSIGQAV 851 (1334)
Q Consensus 817 ~D~LepDgp~G~P~S~EefLkqrs~~LQQLIeQcg 851 (1334)
.|..+. +.+.+..+.|+++++.-+
T Consensus 283 IDMCPA-----------NiLqEtmKll~rllkS~g 306 (641)
T KOG0463|consen 283 IDMCPA-----------NILQETMKLLTRLLKSPG 306 (641)
T ss_pred eccCcH-----------HHHHHHHHHHHHHhcCCC
Confidence 998764 345555566777776633
No 454
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=89.28 E-value=0.24 Score=47.41 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.0
Q ss_pred EEEEeecCCChhhhhhhhcCC
Q 000717 692 ILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 692 IvLVGkpGVGKSSLINSLLGe 712 (1334)
|+|.|.|||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998754
No 455
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=89.23 E-value=0.36 Score=57.45 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=57.9
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|.+||+||+..|+.+.+++...+++..+ .+++++++ ||.|......+.+..+...+..++..+|+...
T Consensus 103 ~aD~allVVda~~G~~~qt~~~~~~~~~~~-----~~~iivvi----NK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~- 172 (406)
T TIGR02034 103 TADLAVLLVDARKGVLEQTRRHSYIASLLG-----IRHVVLAV----NKMDLVDYDEEVFENIKKDYLAFAEQLGFRDV- 172 (406)
T ss_pred hCCEEEEEEECCCCCccccHHHHHHHHHcC-----CCcEEEEE----EecccccchHHHHHHHHHHHHHHHHHcCCCCc-
Confidence 678999999999999998887666655432 24677777 77775322223344455555555667776410
Q ss_pred hhhhhhhhcccccccCCchhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQL 665 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dL 665 (1334)
-+.++||.+|.|+..+
T Consensus 173 -----~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 173 -----TFIPLSALKGDNVVSR 188 (406)
T ss_pred -----cEEEeecccCCCCccc
Confidence 1468999999998753
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=89.22 E-value=1.6 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=23.2
Q ss_pred cCccEEEEEeecCCChhhhhhhhcCCC
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 687 ~~~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
...=|++|+|.+|+|||||++.|.+.-
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 345689999999999999999998753
No 457
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.19 E-value=1.8 Score=50.36 Aligned_cols=24 Identities=42% Similarity=0.862 Sum_probs=21.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
+..++|.|+||+|||++++.++..
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999864
No 458
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.14 E-value=0.24 Score=52.80 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcCCC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.. .++|+|++|+|||||++.|.|-.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 35 78999999999999999999964
No 459
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.92 E-value=0.25 Score=53.03 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 460
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=88.92 E-value=0.71 Score=47.16 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHhhCCCCEEEEEecCCCccCCCCcHHHHHHHHHHhcccCCceEEEEEeccCCCCC
Q 000717 766 KFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 766 kaIkkcgpDVVLLVIDad~~t~e~qDl~lLe~IqeiFG~ea~K~tIIVLTK~D~Lep 822 (1334)
+.+. .+|++|+|+|+..+... .+..+.+.+... ...++.|+|+||+|++++
T Consensus 4 ~~l~--~aD~il~VvD~~~p~~~-~~~~i~~~l~~~---~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 4 KVID--SSDVVIQVLDARDPMGT-RCKHVEEYLKKE---KPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred Hhhh--hCCEEEEEEECCCCccc-cCHHHHHHHHhc---cCCCCEEEEEEchhcCCH
Confidence 4455 46999999998875432 366677766531 234799999999998743
No 461
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=88.91 E-value=0.25 Score=52.57 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 462
>PRK12736 elongation factor Tu; Reviewed
Probab=88.90 E-value=1 Score=53.35 Aligned_cols=80 Identities=16% Similarity=0.091 Sum_probs=52.5
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCc-eEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSR-LATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPE 643 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kp-VvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~ 643 (1334)
.+|++||+||+..|+.+.+++...+++.. +.| +++++ ||.|.... .+..+.+..++...+..+|+.+.
T Consensus 98 ~~d~~llVvd~~~g~~~~t~~~~~~~~~~------g~~~~Ivvi----NK~D~~~~-~~~~~~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 98 QMDGAILVVAATDGPMPQTREHILLARQV------GVPYLVVFL----NKVDLVDD-EELLELVEMEVRELLSEYDFPGD 166 (394)
T ss_pred hCCEEEEEEECCCCCchhHHHHHHHHHHc------CCCEEEEEE----EecCCcch-HHHHHHHHHHHHHHHHHhCCCcC
Confidence 67899999999999999999888887655 456 55666 77774211 01122233345555677887532
Q ss_pred chhhhhhhhccccccc
Q 000717 644 DSLVGQVLHRLSLIAG 659 (1334)
Q Consensus 644 N~vLaQvL~rLSA~hG 659 (1334)
+. -+.++||.+|
T Consensus 167 ~~----~ii~vSa~~g 178 (394)
T PRK12736 167 DI----PVIRGSALKA 178 (394)
T ss_pred Cc----cEEEeecccc
Confidence 11 1457899998
No 463
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=88.90 E-value=0.26 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999964
No 464
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=88.89 E-value=0.26 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 465
>PLN03130 ABC transporter C family member; Provisional
Probab=88.88 E-value=1.1 Score=61.91 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.3
Q ss_pred cEEEEEeecCCChhhhhhhhcCCCc
Q 000717 690 LNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
-.++|+|++|+|||||++.|+|.-.
T Consensus 644 e~vaIvG~sGSGKSTLl~lLlG~~~ 668 (1622)
T PLN03130 644 SLVAIVGSTGEGKTSLISAMLGELP 668 (1622)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3689999999999999999999743
No 466
>PRK04004 translation initiation factor IF-2; Validated
Probab=88.87 E-value=1.1 Score=56.16 Aligned_cols=92 Identities=11% Similarity=0.126 Sum_probs=58.2
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhH-HH------------------HHHHHH
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEE-KT------------------KLEKLQ 625 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~-ke------------------~leKlq 625 (1334)
.+|++||+||...|+.+...+...+++.. +.|+++++ ||+|.. .. ..+...
T Consensus 94 ~aD~~IlVvDa~~g~~~qt~e~i~~~~~~------~vpiIvvi----NK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~ 163 (586)
T PRK04004 94 LADIAILVVDINEGFQPQTIEAINILKRR------KTPFVVAA----NKIDRIPGWKSTEDAPFLESIEKQSQRVQQELE 163 (586)
T ss_pred hCCEEEEEEECCCCCCHhHHHHHHHHHHc------CCCEEEEE----ECcCCchhhhhhcCchHHHHHhhhhHHHHHHHH
Confidence 67899999999999988888877776654 57888888 777742 10 011111
Q ss_pred HHHHHHHHHHHhcCCCCcch-----h-hhhhhhcccccccCCchhhh
Q 000717 626 HLRVKFLRLVHRLGYSPEDS-----L-VGQVLHRLSLIAGRQTGQLF 666 (1334)
Q Consensus 626 ~I~~kF~rl~~RLGlsp~N~-----v-LaQvL~rLSA~hG~Gi~dLl 666 (1334)
....++...+...|+.+..- . -.-.+.++||..|.|+.+|+
T Consensus 164 ~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl 210 (586)
T PRK04004 164 EKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLL 210 (586)
T ss_pred HHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHH
Confidence 12223333456667654210 0 01125689999999999984
No 467
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=88.83 E-value=1.2 Score=57.16 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=61.9
Q ss_pred EeecCCChhhhhhhhcCCCcceecc--CCCceeeEEEEEEE---eCCeEEEEEeCCCCCCCC-cchhhHHHHHHHHHHHH
Q 000717 695 LGKTGVGKSATINSIFGEEKTSIHA--FEPGTTSVKEIVGT---VDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFT 768 (1334)
Q Consensus 695 VGkpGVGKSSLINSLLGee~a~Vss--~~gtTt~~~~~~~e---vdGrkVtLIDTPGL~ds~-i~d~~~ekIlreIkkaI 768 (1334)
+|.-++|||||+|.|+|..-...+. ...||+.+-..... .....+.|+|+=|...+. ..+..-+.-..-+ ++
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~er~~~~~fe~~~alf--~l 78 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGRERGEDQDFERKSALF--AL 78 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCchhhccccchHHHHHHH--HH
Confidence 5888999999999999985333332 12344432111111 123467899999986552 2211111111111 22
Q ss_pred hhCCCCEEEE---EecCCCccCCCCcHHHHHHH----HHHhccc--CCceEEEEEeccCCC
Q 000717 769 KKCAPDIVLY---VDRLDSQTRDLNDLPLLRSI----TNALGTQ--IWRSAIVTLTHAASA 820 (1334)
Q Consensus 769 kkcgpDVVLL---VIDad~~t~e~qDl~lLe~I----qeiFG~e--a~K~tIIVLTK~D~L 820 (1334)
.. .||+|+ +++++.... ..+.+|+.+ .+.|++. ....+.++|---|..
T Consensus 79 a~--s~~~iiN~w~~~iG~~~~--an~~lLktvfevnl~lf~~~~~~~~k~~llfviRD~~ 135 (742)
T PF05879_consen 79 AV--SDVLIINMWEHDIGRYQG--ANMGLLKTVFEVNLQLFGKSKSNDRKTLLLFVIRDHT 135 (742)
T ss_pred Hh--hhheeeehhhhhhhhhcc--cchHHHHHHHHHHHHHHhhcccCCCCceEEEEEeeCC
Confidence 22 266655 346665543 245555554 4467654 344555555555544
No 468
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=88.72 E-value=0.27 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
=.++|+|++|+|||||++.|.|..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999999964
No 469
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=88.67 E-value=0.45 Score=51.50 Aligned_cols=86 Identities=17% Similarity=0.258 Sum_probs=49.3
Q ss_pred cCCeEEEEEcCCCC-------CCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHH--HHHHHHHHHHHHHHHHH
Q 000717 565 QDGSKLFSVERPAG-------LGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEK--TKLEKLQHLRVKFLRLV 635 (1334)
Q Consensus 565 ~adviLFvVD~raG-------Lt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~k--e~leKlq~I~~kF~rl~ 635 (1334)
.++++|||||+..| +.....+...+++.. ..+|+++++ ||.|... ........+...+...+
T Consensus 100 ~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iiivv----NK~Dl~~~~~~~~~~~~i~~~l~~~l 170 (219)
T cd01883 100 QADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL-----GVKQLIVAV----NKMDDVTVNWSEERYDEIKKELSPFL 170 (219)
T ss_pred hCCEEEEEEECCCCccccccccccchHHHHHHHHHc-----CCCeEEEEE----EccccccccccHHHHHHHHHHHHHHH
Confidence 57899999999874 333333322222222 136788887 7877531 01122333444444456
Q ss_pred HhcCCCCcchhhhhhhhcccccccCCch
Q 000717 636 HRLGYSPEDSLVGQVLHRLSLIAGRQTG 663 (1334)
Q Consensus 636 ~RLGlsp~N~vLaQvL~rLSA~hG~Gi~ 663 (1334)
.++|+.+.+. -+.++||.+|.|+.
T Consensus 171 ~~~~~~~~~~----~ii~iSA~tg~gi~ 194 (219)
T cd01883 171 KKVGYNPKDV----PFIPISGLTGDNLI 194 (219)
T ss_pred HHcCCCcCCc----eEEEeecCcCCCCC
Confidence 7788753211 14689999999875
No 470
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=88.65 E-value=0.24 Score=58.19 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=21.4
Q ss_pred EEEEEeecCCChhhhhhhhcCCCc
Q 000717 691 NILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
-++|+|++|||||||++.|.|-+.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999998653
No 471
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=88.62 E-value=0.27 Score=52.51 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
No 472
>PRK07261 topology modulation protein; Provisional
Probab=88.61 E-value=0.27 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEEEeecCCChhhhhhhhcC
Q 000717 690 LNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLG 711 (1334)
.||+|+|.||+|||||...|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 473
>PRK00089 era GTPase Era; Reviewed
Probab=88.60 E-value=0.77 Score=51.54 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=56.3
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||++|+..+++..+..+...++.. ++|++++. ||+|..... ..+......+. ...++.+
T Consensus 84 ~~D~il~vvd~~~~~~~~~~~i~~~l~~~------~~pvilVl----NKiDl~~~~-~~l~~~~~~l~---~~~~~~~-- 147 (292)
T PRK00089 84 DVDLVLFVVDADEKIGPGDEFILEKLKKV------KTPVILVL----NKIDLVKDK-EELLPLLEELS---ELMDFAE-- 147 (292)
T ss_pred cCCEEEEEEeCCCCCChhHHHHHHHHhhc------CCCEEEEE----ECCcCCCCH-HHHHHHHHHHH---hhCCCCe--
Confidence 57899999999998898888888777743 57899988 887753110 11111112221 2233332
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTA 675 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~ 675 (1334)
++++||..+.|+.+|+ +.+...+
T Consensus 148 ------i~~iSA~~~~gv~~L~--~~L~~~l 170 (292)
T PRK00089 148 ------IVPISALKGDNVDELL--DVIAKYL 170 (292)
T ss_pred ------EEEecCCCCCCHHHHH--HHHHHhC
Confidence 4689999999998883 5544444
No 474
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=88.58 E-value=0.28 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
-.++|+|++|+|||||++.|.|-.
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999964
No 475
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=88.58 E-value=0.26 Score=53.06 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999999964
No 476
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.58 E-value=0.27 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999964
No 477
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=88.57 E-value=0.77 Score=51.36 Aligned_cols=86 Identities=15% Similarity=0.086 Sum_probs=51.2
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||++|+..+.+.. +.+...+++. ++|+++++ ||+|.... +.+......+ ....++.+
T Consensus 79 ~aDvvl~VvD~~~~~~~~-~~i~~~l~~~------~~p~ilV~----NK~Dl~~~--~~~~~~~~~~---~~~~~~~~-- 140 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG-EFVLTKLQNL------KRPVVLTR----NKLDNKFK--DKLLPLIDKY---AILEDFKD-- 140 (270)
T ss_pred hCCEEEEEEECCCCCchH-HHHHHHHHhc------CCCEEEEE----ECeeCCCH--HHHHHHHHHH---HhhcCCCc--
Confidence 678999999998765443 4444444433 57899988 88875311 1111111111 12233322
Q ss_pred hhhhhhhhcccccccCCchhhhcHHHHHHHhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTAL 676 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dLl~LD~a~~~~~ 676 (1334)
++++||.+|.|+.+| ++.+...++
T Consensus 141 ------v~~iSA~~g~gi~~L--~~~l~~~l~ 164 (270)
T TIGR00436 141 ------IVPISALTGDNTSFL--AAFIEVHLP 164 (270)
T ss_pred ------eEEEecCCCCCHHHH--HHHHHHhCC
Confidence 478999999999988 455554443
No 478
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=88.56 E-value=0.39 Score=60.11 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=58.2
Q ss_pred cCCeEEEEEcCCCCCCcccccccCCCCCCCCCcCCCCceEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLt~aD~eiA~~LRr~~~ni~s~kpVvLaa~~~~NKsEe~ke~leKlq~I~~kF~rl~~RLGlsp~N 644 (1334)
.+|++||+||+..|+++.+++...+++..+ .+++++++ ||+|......+.+..+..++...+..+|+...
T Consensus 127 ~aD~~llVvda~~g~~~~t~e~~~~~~~~~-----~~~iivvv----NK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~- 196 (632)
T PRK05506 127 TADLAIILVDARKGVLTQTRRHSFIASLLG-----IRHVVLAV----NKMDLVDYDQEVFDEIVADYRAFAAKLGLHDV- 196 (632)
T ss_pred hCCEEEEEEECCCCccccCHHHHHHHHHhC-----CCeEEEEE----EecccccchhHHHHHHHHHHHHHHHHcCCCCc-
Confidence 778999999999999998887776665442 25777777 88875321122334444455555677887421
Q ss_pred hhhhhhhhcccccccCCchhh
Q 000717 645 SLVGQVLHRLSLIAGRQTGQL 665 (1334)
Q Consensus 645 ~vLaQvL~rLSA~hG~Gi~dL 665 (1334)
-+.++||.+|.|+.++
T Consensus 197 -----~iipiSA~~g~ni~~~ 212 (632)
T PRK05506 197 -----TFIPISALKGDNVVTR 212 (632)
T ss_pred -----cEEEEecccCCCcccc
Confidence 1468999999998753
No 479
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=88.47 E-value=0.28 Score=52.12 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999964
No 480
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=88.26 E-value=0.3 Score=51.92 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999964
No 481
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.23 E-value=0.29 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.7
Q ss_pred EEEEEeecCCChhhhhhhhcCCC
Q 000717 691 NILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGee 713 (1334)
.|+|+|++|+||||+++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999997753
No 482
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.20 E-value=1.3 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-+|.|+|.+|+|||||++.|.|--
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCcc
Confidence 4579999999999999999999853
No 483
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=88.20 E-value=0.3 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=22.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999974
No 484
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=88.19 E-value=0.3 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.7
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
=.++|+|++|+|||||++.|.|-.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999964
No 485
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=88.19 E-value=0.3 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|-.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999864
No 486
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=88.15 E-value=0.3 Score=51.84 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 487
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.14 E-value=0.31 Score=51.92 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 488
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=88.11 E-value=0.33 Score=61.85 Aligned_cols=26 Identities=27% Similarity=0.539 Sum_probs=22.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.=+|+|+|++|+|||||.+.|+|-..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34799999999999999999998643
No 489
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.09 E-value=0.31 Score=52.00 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 490
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=88.04 E-value=0.31 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=22.7
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCCc
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEEK 714 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee~ 714 (1334)
.=.++|+|++|+|||||++.|.|...
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34689999999999999999999743
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=88.03 E-value=0.26 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
.|+|+|++|+||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 492
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=87.94 E-value=0.32 Score=52.48 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred cEEEEEeecCCChhhhhhhhcCCC
Q 000717 690 LNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 690 LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
=.++|+|++|+|||||++.|.|..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999964
No 493
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=87.92 E-value=0.32 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999964
No 494
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=87.89 E-value=0.32 Score=51.85 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3468999999999999999999964
No 495
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=87.88 E-value=0.33 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred CccEEEEEeecCCChhhhhhhhcC
Q 000717 688 FTLNILVLGKTGVGKSATINSIFG 711 (1334)
Q Consensus 688 ~~LRIvLVGkpGVGKSSLINSLLG 711 (1334)
..-+++|+|++|+|||||+|.|++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 455789999999999999999985
No 496
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=87.86 E-value=0.33 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.3
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4468999999999999999999974
No 497
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=87.84 E-value=0.25 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=17.5
Q ss_pred EEEEEeecCCChhhhhhhhcCC
Q 000717 691 NILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 691 RIvLVGkpGVGKSSLINSLLGe 712 (1334)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999854
No 498
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=87.83 E-value=0.33 Score=52.63 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.8
Q ss_pred ccEEEEEeecCCChhhhhhhhcCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGE 712 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGe 712 (1334)
.-.++|+|++|+|||||++.|.|.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999996
No 499
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=87.77 E-value=0.33 Score=51.86 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.=.++|+|++|+|||||++.|.|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999964
No 500
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.77 E-value=0.33 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.1
Q ss_pred ccEEEEEeecCCChhhhhhhhcCCC
Q 000717 689 TLNILVLGKTGVGKSATINSIFGEE 713 (1334)
Q Consensus 689 ~LRIvLVGkpGVGKSSLINSLLGee 713 (1334)
.-.++|+|++|+|||||++.|.|-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999864
Done!