Query 000717
Match_columns 1334
No_of_seqs 455 out of 3383
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 16:53:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000717.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_488-491//hhsearch_pdb/000717hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjg_A GTP-binding protein ENG 1.0 1 1 206.7 10.8 220 565-823 82-302 (436)
2 3def_A T7I23.11 protein; chlor 1.0 1 1 203.8 17.7 203 687-897 34-236 (262)
3 4dcu_A GTP-binding protein ENG 1.0 1 1 203.1 12.9 236 536-823 86-322 (456)
4 1mky_A Probable GTP-binding pr 1.0 1 1 194.9 13.5 239 536-822 65-307 (439)
5 1h65_A Chloroplast outer envel 1.0 1 1 190.4 19.9 201 687-896 37-237 (270)
6 3lxx_A GTPase IMAP family memb 1.0 1 1 170.5 12.1 199 687-913 27-234 (239)
7 3lxw_A GTPase IMAP family memb 1.0 1 1 170.3 12.4 198 687-912 19-227 (247)
8 3ec1_A YQEH GTPase; atnos1, at 1.0 1 1 144.6 4.8 228 539-823 57-290 (369)
9 3h2y_A GTPase family protein; 1.0 1 1 139.6 4.0 228 539-823 55-289 (368)
10 2xtp_A GTPase IMAP family memb 1.0 1 1 134.7 17.6 159 687-857 20-182 (260)
No 1
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=206.68 Aligned_cols=220 Identities=16% Similarity=0.219 Sum_probs=163.0
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 59828999728899995210115899999878679984699735788974668999999999999999999862999863
Q 000717 565 QDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEKTKLEKLQHLRVKFLRLVHRLGYSPED 644 (1334)
Q Consensus 565 ~adviLFvVD~raGLtsaD~~iA~~LRk~~~ni~s~kpViLaa~~~~NKsEe~ke~~eklq~l~vkFlrlv~RLGlsp~n 644 (1334)
.+|++||++|++.|++..|..++.++|+. ++|+++++ ||+|..... . ...+| +++|+.+
T Consensus 82 ~ad~il~vvD~~~~~~~~d~~~~~~l~~~------~~pvilv~----NK~D~~~~~----~-~~~~~----~~lg~~~-- 140 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADEEVAKILYRT------KKPVVLAV----NKLDNTEMR----A-NIYDF----YSLGFGE-- 140 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHHHHHHHHTTC------CSCEEEEE----ECCCC----------CCCSS----GGGSSCC--
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEE----ECCCCCCCH----H-HHHHH----HHCCCCC--
T ss_conf 48899999847889997999999999973------99879999----896686435----6-67889----8718997--
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCE
Q ss_conf 11221300021212578101101899999856666864102468508999720599802556635099740112579822
Q 000717 645 SLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGT 724 (1334)
Q Consensus 645 ~iVaQVLyrISA~hG~Gi~dLl~LD~v~~~a~e~eae~~edl~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss~~gtT 724 (1334)
++++||.||.|+.+| ++.+...++..+.+ ......++|+++|++|||||||+|+|++..+..++..+++|
T Consensus 141 ------~~~iSA~~g~gv~~L--~~~i~~~l~~~~~~--~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT 210 (436)
T 2hjg_A 141 ------PYPISGTHGLGLGDL--LDAVAEHFKNIPET--KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT 210 (436)
T ss_dssp ------CEECBTTTTBTHHHH--HHHHHHTGGGCCSS--CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC------
T ss_pred ------EEEEECCCCCCHHHH--HHHHHHHCCCCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCE
T ss_conf ------699967689895999--99998756732111--11246727999757998877999997287742314899961
Q ss_pred EEEEEEEEEECCEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 248999988679389999499998898-6402489999999998740899799999648985578781999999997714
Q 000717 725 TSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALG 803 (1334)
Q Consensus 725 tdv~~i~~evdGrkItIIDTPGL~ds~-i~e~iekkILkeIkkaIkk~gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG 803 (1334)
++.......+++.++.||||||+++.. .....++........++.. +|++++|++++..... ++..++..+.
T Consensus 211 ~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad~~llv~D~~~~~s~-~~~~~~~~~~---- 283 (436)
T 2hjg_A 211 RDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR--SEVVAVVLDGEEGIIE-QDKRIAGYAH---- 283 (436)
T ss_dssp ---CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHH--CSEEEEEEETTTCCCH-HHHHHHHHHH----
T ss_pred EEEEEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHH--CCEEEEEECCCCCCCH-HHHHHHHHHH----
T ss_conf 61368999989918999979884707554421789999999998875--9999999828767768-9999999999----
Q ss_pred CCCCCEEEEEEECCCCCCCC
Q ss_conf 46776099999245789999
Q 000717 804 TQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 804 ~eiwK~vIIVLTKaD~LePD 823 (1334)
...+++|+|+||||....+
T Consensus 284 -~~~~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 284 -EAGKAVVIVVNKWDAVDKD 302 (436)
T ss_dssp -HTTCEEEEEEECGGGSCCC
T ss_pred -HCCCCEEEEEECCCCCCCC
T ss_conf -8399679999891278863
No 2
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=1.00 E-value=1 Score=203.83 Aligned_cols=203 Identities=37% Similarity=0.592 Sum_probs=167.2
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68508999720599802556635099740112579822248999988679389999499998898640248999999999
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~i~e~iekkILkeIkk 766 (1334)
...++|+++|.+|+|||||+|+|++...+.++...++|.........+.+..+.||||||+.+... ..+...+.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~---~~~~~~~~i~~ 110 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY---VNHQALELIKG 110 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE---ECHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCC---CHHHHHHHHHH
T ss_conf 887589998999999999999982998742378898502369999987894699998989887531---16999999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87408997999996489855787819999999977144677609999924578999999999875999998523999999
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQS 846 (1334)
Q Consensus 767 aIkk~gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePDg~~g~PiSiEefIkqrsk~LQEl 846 (1334)
++...++|++|||++++.......+..+++.+.+.++...++++|+|+||+|..++++ .++++|+.+....++++
T Consensus 111 ~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~ 185 (262)
T 3def_A 111 FLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKT 185 (262)
T ss_dssp HTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHH
T ss_conf 9853798989999748877899899999999999856352437899996733479877-----65999998604999999
Q ss_pred HHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHH
Q ss_conf 998406625047676784000036810023689935459999875779976
Q 000717 847 IGQAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLL 897 (1334)
Q Consensus 847 IeQcgGry~llNnkd~nPv~LVENIP~CvKN~kgEmVLPNG~dW~~~LLlL 897 (1334)
|.++.+...+.......|+.++++.+.|.+|..++.++|+|.+|++.|+..
T Consensus 186 i~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~~ 236 (262)
T 3def_A 186 IRAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVKA 236 (262)
T ss_dssp HHHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHHH
T ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCEEHHHHHHH
T ss_conf 999727452235356688899867887788989776799998609999999
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=203.09 Aligned_cols=236 Identities=16% Similarity=0.197 Sum_probs=171.7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 20209999999998507889998503521598289997288999952101158999998786799846997357889746
Q 000717 536 ELFDSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSE 615 (1334)
Q Consensus 536 elFdsaalaallkAAt~~~~~gg~v~its~adviLFvVD~raGLtsaD~~iA~~LRk~~~ni~s~kpViLaa~~~~NKsE 615 (1334)
+.|..........+.. .+|++||++|++.|++..+..++.++|+. ++|+++++ ||+|
T Consensus 86 ~~~~~~~~~~~~~~~~-------------~ad~il~VvD~~~~~~~~d~~l~~~l~~~------~~pvilV~----NK~D 142 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMD-------------EADVIIFMVNGREGVTAADEEVAKILYRT------KKPVVLAV----NKLD 142 (456)
T ss_dssp -CCHHHHHHHHHHHHH-------------HCSEEEEEEESSSCSCHHHHHHHHHHTTC------CSCEEEEE----ECC-
T ss_pred HHHHHHHHHHHHHHHH-------------HCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEE----ECCC
T ss_conf 1789999999986686-------------59999999717889975789999999975------99889999----7922
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 68999999999999999999862999863112213000212125781011018999998566668641024685089997
Q 000717 616 EEKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVL 695 (1334)
Q Consensus 616 e~ke~~eklq~l~vkFlrlv~RLGlsp~n~iVaQVLyrISA~hG~Gi~dLl~LD~v~~~a~e~eae~~edl~~~LRIVVV 695 (1334)
.... .....+| +++|+.. ++++||.+|.|+.+| ++.+....+.... .......++|+++
T Consensus 143 ~~~~-----~~~~~e~----~~lg~~~--------~~~iSA~~g~gv~~L--~~~i~~~l~~~~~--~~~~~~~~ki~iv 201 (456)
T 4dcu_A 143 NTEM-----RANIYDF----YSLGFGE--------PYPISGTHGLGLGDL--LDAVAEHFKNIPE--TKYNEEVIQFCLI 201 (456)
T ss_dssp -------------CCS----GGGSSSS--------EEECCTTTCTTHHHH--HHHHHTTGGGSCS--SCCCTTCEEEEEE
T ss_pred CHHH-----HHHHHHH----HHCCCCC--------EEEEECCCCCCHHHH--HHHHHHHCCCCCC--CCCCCCCCEEEEE
T ss_conf 4024-----6667999----9759995--------488631025434789--9998764343212--3334555146773
Q ss_pred EECCCCHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 20599802556635099740112579822248999988679389999499998898-64024899999999987408997
Q 000717 696 GKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCAPD 774 (1334)
Q Consensus 696 GkTGVGKSSLINSLLGeera~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~-i~e~iekkILkeIkkaIkk~gpD 774 (1334)
|.+|+|||||+|+|++..++.++..+++|++.......+++.++.||||||+++.. .....++........++.. +|
T Consensus 202 G~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~--ad 279 (456)
T 4dcu_A 202 GRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR--SE 279 (456)
T ss_dssp CSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH--CS
T ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH--CC
T ss_conf 2899987899999857785025799974887799999989963999989999867664237889999999998853--99
Q ss_pred EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9999964898557878199999999771446776099999245789999
Q 000717 775 IVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 775 VVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePD 823 (1334)
++|+|+++.....+ ++..++..+.+ ..+++|+|+||||....+
T Consensus 280 ~~llviD~~~~~~~-~~~~~~~~~~~-----~~~~~ilv~NK~Dl~~~~ 322 (456)
T 4dcu_A 280 VVAVVLDGEEGIIE-QDKRIAGYAHE-----AGKAVVIVVNKWDAVDKD 322 (456)
T ss_dssp EEEEEEETTTCCCH-HHHHHHHHHHH-----TTCEEEEEEECGGGSCCC
T ss_pred EEEEEEECCCCCCH-HHHHHHHHHHH-----CCCCEEEEEECHHCCCCC
T ss_conf 99999958877679-99999999998-----399879999974448974
No 4
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=194.87 Aligned_cols=239 Identities=16% Similarity=0.202 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCH
Q ss_conf 20209999999998507889998503521598289997288999952101158999998786799846997357889746
Q 000717 536 ELFDSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSE 615 (1334)
Q Consensus 536 elFdsaalaallkAAt~~~~~gg~v~its~adviLFvVD~raGLtsaD~~iA~~LRk~~~ni~s~kpViLaa~~~~NKsE 615 (1334)
+.|......+...+.. .+|++||++|++.|++..|..++.|+|+. ++|+++++ ||+|
T Consensus 65 ~~~~~~~~~~~~~~~~-------------~ad~il~V~D~~~~~~~~d~~i~~~l~~~------~~p~ilv~----NK~D 121 (439)
T 1mky_A 65 DIISQKMKEVTLNMIR-------------EADLVLFVVDGKRGITKEDESLADFLRKS------TVDTILVA----NKAE 121 (439)
T ss_dssp GCCCHHHHHHHHHHHT-------------TCSEEEEEEETTTCCCHHHHHHHHHHHHH------TCCEEEEE----ESCC
T ss_pred CHHHHHHHHHHHHHHH-------------HCCEEEEEEECCCCCCHHHHHHHHHHHHC------CCCEEEEE----ECCC
T ss_conf 0589999999999998-------------69999999879989897999999999875------99989999----5989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHH--HHCCCCCCCEEE
Q ss_conf 689999999999999999998629998631122130002121257810110189999985666686--410246850899
Q 000717 616 EEKTKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAE--EKDDLNFTLNIL 693 (1334)
Q Consensus 616 e~ke~~eklq~l~vkFlrlv~RLGlsp~n~iVaQVLyrISA~hG~Gi~dLl~LD~v~~~a~e~eae--~~edl~~~LRIV 693 (1334)
..+.. .......| +++|+.+ ++++||.||.|+.+| ++.+...++..... ........++|+
T Consensus 122 ~~~~~---~~~~~~~~----~~lg~~~--------~~~iSA~~g~gv~~L--~~~i~~~l~~~~~~~~~~~~~~~~~kva 184 (439)
T 1mky_A 122 NLREF---EREVKPEL----YSLGFGE--------PIPVSAEHNINLDTM--LETIIKKLEEKGLDLESKPEITDAIKVA 184 (439)
T ss_dssp SHHHH---HHHTHHHH----GGGSSCS--------CEECBTTTTBSHHHH--HHHHHHHHHHTTCCSSSCCCCCSCEEEE
T ss_pred CCCCC---HHHHHHHH----HHCCCCC--------EEEEECCCCCCHHHH--HHHHHHHCCCCCCCCHHCCCCCCCCEEE
T ss_conf 84336---77899999----9638997--------799966478997999--9999985553220001001234671699
Q ss_pred EEEECCCCHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCC-C-HHHHHHHHHHHHHHHHHC
Q ss_conf 97205998025566350997401125798222489999886793899994999988986-4-024899999999987408
Q 000717 694 VLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGV-E-QGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 694 VVGkTGVGKSSLINSLLGeera~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~i-~-e~iekkILkeIkkaIkk~ 771 (1334)
++|++|+|||||+|.|++.....+++.+++|++.......++|..+.++||||+..... . +............++..
T Consensus 185 ivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~- 263 (439)
T 1mky_A 185 IVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK- 263 (439)
T ss_dssp EECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHH-
T ss_pred EECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_conf 9788999879999998387652468999974873579999999789999998976445565035999999999988853-
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
Q ss_conf 997999996489855787819999999977144677609999924578999
Q 000717 772 APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPP 822 (1334)
Q Consensus 772 gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LeP 822 (1334)
.|++++|+++...... ++..+...+. ...+++|+|+||||....
T Consensus 264 -ad~vllv~d~~~~~~~-~~~~i~~~l~-----~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 264 -ADVVVIVLDATQGITR-QDQRMAGLME-----RRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp -CSEEEEEEETTTCCCH-HHHHHHHHHH-----HTTCEEEEEEECGGGSTT
T ss_pred -CCEEEEEEECCCCCCH-HHHHHHHHHH-----HCCCCEEEEEECCCCCCC
T ss_conf -9999999858878898-9999999999-----829988999989028984
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=1.00 E-value=1 Score=190.39 Aligned_cols=201 Identities=41% Similarity=0.630 Sum_probs=157.9
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68508999720599802556635099740112579822248999988679389999499998898640248999999999
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIKK 766 (1334)
Q Consensus 687 ~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~i~e~iekkILkeIkk 766 (1334)
...++|+++|.+|+|||||+|+|++.....++...++|...........+.++.||||||+.+.... .....+.+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~---~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI---NDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE---CHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCC---HHHHHHHHHH
T ss_conf 9975999988999989999999959986322688986322689998649967999989888887525---6999999999
Q ss_pred HHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 87408997999996489855787819999999977144677609999924578999999999875999998523999999
Q 000717 767 FTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVVQQS 846 (1334)
Q Consensus 767 aIkk~gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePDg~~g~PiSiEefIkqrsk~LQEl 846 (1334)
++...++|+||||++++.......+..+++.+.+.|+...|.++|+|+||+|..++++ .++++|+.+....+++.
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~ 188 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQV 188 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC-----CCHHHHHHHHHHHHHHH
T ss_conf 8633799999999848888688899999999998727002267899997866678678-----88999999879999999
Q ss_pred HHHHCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHH
Q ss_conf 99840662504767678400003681002368993545999987577997
Q 000717 847 IGQAVGDLRLMNPSLMNPVSLVENHPACRKNRDGQKVLPNGQTWRPQLLL 896 (1334)
Q Consensus 847 IeQcgGry~llNnkd~nPv~LVENIP~CvKN~kgEmVLPNG~dW~~~LLl 896 (1334)
+.+.....+.+. ....|+.++++.+.|.++..+++++|++..|.+.|+.
T Consensus 189 ~~~~~~~~~~~~-~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~ 237 (270)
T 1h65_A 189 VRSGASLKKDAQ-ASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQ 237 (270)
T ss_dssp HHHHTTCCTTSG-GGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCEECCCCCCCHHHHHH
T ss_conf 998501455310-1039879981788430468886677899772789999
No 6
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=170.49 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=144.1
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCC-CCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6850899972059980255663509974011257-982224899998867938999949999889864024899999999
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAF-EPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss~-~gtTtdv~~i~~evdGrkItIIDTPGL~ds~i~e~iekkILkeIk 765 (1334)
...++|+|+|.+|+|||||+|+|++...+..... .++|..+......+.+..+.||||||+.+..... ..+.+.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~---~~~~~~~~ 103 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN---AETSKEII 103 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C---HHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCH---HHHHHHHH
T ss_conf 996599998899998999999982998676589988530368888888679669999799855788887---99999999
Q ss_pred HHHHHC--CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 987408--997999996489855787819999999977144677609999924578999999999875999998523999
Q 000717 766 KFTKKC--APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPDGPSGSPLSYEIFVAQRSHVV 843 (1334)
Q Consensus 766 kaIkk~--gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePDg~~g~PiSiEefIkqrsk~L 843 (1334)
+++..+ ++|++|+|+++++.+. .+...++.+.+.|+...++++|+|+||+|.+.. ..+++|+......+
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-------~~~~~~i~~~~~~l 174 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGD-------TNLHDYLREAPEDI 174 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------CHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCH--HHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC-------CCHHHHHHHCHHHH
T ss_conf 999846999809999922899999--999999999988523034609999967766886-------45999998664999
Q ss_pred HHHHHHHCCCEEECCCCCCC------CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999840662504767678------40000368100236899354599998757799767889999999631199
Q 000717 844 QQSIGQAVGDLRLMNPSLMN------PVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKILSEASSLAKP 913 (1334)
Q Consensus 844 QElIeQcgGry~llNnkd~n------Pv~LVENIP~CvKN~kgEmVLPNG~dW~~~LLlLCys~KIl~eAe~LLk~ 913 (1334)
++++++|+++|+.+++.... -..|++.+... +..+++ .||+..|+.+++..++.
T Consensus 175 ~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~--------~~~~~g--------~~~~~~~~~~~e~~~~~ 234 (239)
T 3lxx_A 175 QDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRV--------VRENKE--------GCYTNRMYQRAEEEIQK 234 (239)
T ss_dssp HHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHH--------HHHCTT--------SCC--------------
T ss_pred HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH--------HHHCCC--------CCCCHHHHHHHHHHHHH
T ss_conf 9999974998999979887631489999999999999--------997599--------97768999999999999
No 7
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=1.00 E-value=1 Score=170.28 Aligned_cols=198 Identities=22% Similarity=0.242 Sum_probs=140.3
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCEECC-CCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 685089997205998025566350997401125-7982224899998867938999949999889864024899999999
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHA-FEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQGVNRKVLASIK 765 (1334)
Q Consensus 687 ~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss-~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~i~e~iekkILkeIk 765 (1334)
...++|+|+|+||+|||||+|+|++...+.... ..++|+.+......+.++++.||||||+.+..... .+.....+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK--TDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH--HSTTSHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCCCCCCC--HHHHHHHHH
T ss_conf 995089998999981999999983998765568999806617999999789579999897977777771--889999999
Q ss_pred HHHH--HCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC-EEEEEEECCCCCCCCCCCCCCCCHHHHHHHH-HH
Q ss_conf 9874--089979999964898557878199999999771446776-0999992457899999999987599999852-39
Q 000717 766 KFTK--KCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWR-SAIVTLTHAASAPPDGPSGSPLSYEIFVAQR-SH 841 (1334)
Q Consensus 766 kaIk--k~gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK-~vIIVLTKaD~LePDg~~g~PiSiEefIkqr-sk 841 (1334)
+++. ..++|++|+|+++++++. .+..+++.+.+.|+...+. ++|++.||+|... .++++++... ..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--------~~~~~~l~~~~~~ 166 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTA--QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--------GSLHDYVSNTENR 166 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCCH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCH--HHHHHHHHHHHHHCHHHHCCEEEEEECHHHCCC--------CCHHHHHHHCCCH
T ss_conf 999842778878999976797888--999999999998481322667999983575389--------9799998614649
Q ss_pred HHHHHHHHHCCCEEECCCCCCC------CCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999840662504767678------4000036810023689935459999875779976788999999963119
Q 000717 842 VVQQSIGQAVGDLRLMNPSLMN------PVSLVENHPACRKNRDGQKVLPNGQTWRPQLLLLCYSMKILSEASSLAK 912 (1334)
Q Consensus 842 ~LQElIeQcgGry~llNnkd~n------Pv~LVENIP~CvKN~kgEmVLPNG~dW~~~LLlLCys~KIl~eAe~LLk 912 (1334)
.+++++.+|+++|+.++++... -..|++.+.. ++..++. .||+..|+.+++.+..
T Consensus 167 ~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~--------~~~~~~~--------~~y~~~~~~~~~~~~~ 227 (247)
T 3lxw_A 167 ALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEG--------LVLEHKG--------AHYSNEVYELAQVLRW 227 (247)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHH--------HHHHTTT--------CCCCCHHHHHHHHGGG
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHH--------HHHHCCC--------CCCCHHHHHHHHHHHC
T ss_conf 89999997598499996778763017999999999999--------9997499--------9887899999998615
No 8
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=1.00 E-value=1 Score=144.55 Aligned_cols=228 Identities=20% Similarity=0.166 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 09999999998507889998503521598289997288999952101158999998786799846997357889746689
Q 000717 539 DSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEK 618 (1334)
Q Consensus 539 dsaalaallkAAt~~~~~gg~v~its~adviLFvVD~raGLtsaD~~iA~~LRk~~~ni~s~kpViLaa~~~~NKsEe~k 618 (1334)
...++.++++... ..++++|++||.+.-.++....+..++ .++|++++. ||+|-..
T Consensus 57 ~~e~f~~~L~~~~------------~~~~lil~VvD~~d~~~s~~~~l~~~l--------~~~piilV~----NK~DLl~ 112 (369)
T 3ec1_A 57 DDDDFLSMLHRIG------------ESKALVVNIVDIFDFNGSFIPGLPRFA--------ADNPILLVG----NKADLLP 112 (369)
T ss_dssp --CHHHHHHHHHH------------HHCCEEEEEEETTCSGGGCCSSHHHHC--------TTSCEEEEE----ECGGGSC
T ss_pred CHHHHHHHHHHHH------------CCCCEEEEEEECCCCCCCHHHHHHHHH--------CCCCEEEEE----ECHHCCC
T ss_conf 9899999999762------------368689999979887775406799984--------799789999----9743089
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 99999999999999999862999863112213000212125781011018999998566668641024685089997205
Q 000717 619 TKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKT 698 (1334)
Q Consensus 619 e~~eklq~l~vkFlrlv~RLGlsp~n~iVaQVLyrISA~hG~Gi~dLl~LD~v~~~a~e~eae~~edl~~~LRIVVVGkT 698 (1334)
.. ...+.+..++...+.++|+.+.+ .+.+||.+|.|+..|+ +.+.... ...+|+++|.|
T Consensus 113 ~~-~~~~~~~~~l~~~~~~~g~~~~~------v~~iSA~~g~gi~~L~--~~I~~~~------------~~~~i~~vG~~ 171 (369)
T 3ec1_A 113 RS-VKYPKLLRWMRRMAEELGLCPVD------VCLVSAAKGIGMAKVM--EAINRYR------------EGGDVYVVGCT 171 (369)
T ss_dssp TT-CCHHHHHHHHHHHHHTTTCCCSE------EEECBTTTTBTHHHHH--HHHHHHH------------TTSCEEEECCT
T ss_pred CC-CCHHHHHHHHHHHHHHCCCCCCC------EEEEECCCCCCHHHHH--HHHHHHC------------CCCCEEEECCC
T ss_conf 75-68899999999999976998540------8999788898989999--9998623------------46718999179
Q ss_pred CCCHHHHHHHHCCC-----CCCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99802556635099-----740112579822248999988679389999499998898-640248999999999874089
Q 000717 699 GVGKSATINSIFGE-----EKTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKCA 772 (1334)
Q Consensus 699 GVGKSSLINSLLGe-----era~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~-i~e~iekkILkeIkkaIkk~g 772 (1334)
|+|||||+|+|++. ....++..+++|+....+.. +..+.|+||||+.+.. ....... ..+..++....
T Consensus 172 nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~---~~l~~~~~~~~ 245 (369)
T 3ec1_A 172 NVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVDA---RDLKIITPKRE 245 (369)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSCT---TTHHHHSCSSC
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEECCCCCEEEEEEEEEE---CCCEEEEECCCCCCHHHHHHHHHH---HHHHHHHCCCC
T ss_conf 996489999987651588652020589976776699980---797499968885767788888769---99999860555
Q ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 979999964898557878199999999771446776099999245789999
Q 000717 773 PDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 773 pDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePD 823 (1334)
++.++|++++.....- .++..+..+. ....++++++||.|.+...
T Consensus 246 i~~~~~~l~~~~~~~~-g~l~~l~~l~-----~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 246 IHPRVYQLNEGQTLFF-GGLARLDYIK-----GGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp CCCEEEEECTTEEEEE-TTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred CCCEEEEECCCCEEEE-CCEEEEEECC-----CCCCEEEEEECCCCCCCCC
T ss_conf 6845999858966778-8878998726-----8995599994587544544
No 9
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=1.00 E-value=1 Score=139.57 Aligned_cols=228 Identities=18% Similarity=0.158 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 09999999998507889998503521598289997288999952101158999998786799846997357889746689
Q 000717 539 DSAALAALLKAAAGADSDGGNITITSQDGSKLFSVERPAGLGTSLRTLKPAPRPNRTNLFTSSRLATGGETETNLSEEEK 618 (1334)
Q Consensus 539 dsaalaallkAAt~~~~~gg~v~its~adviLFvVD~raGLtsaD~~iA~~LRk~~~ni~s~kpViLaa~~~~NKsEe~k 618 (1334)
..+++.++++... ..++++|+++|... .+....+.+++. ..++|++++. ||+|-..
T Consensus 55 ~~e~f~~~l~~i~------------~~~~~il~VvD~~d----~~~~~~~~l~~~----~~~~p~ilV~----NK~DL~~ 110 (368)
T 3h2y_A 55 TDDDFLRILNGIG------------KSDALVVKIVDIFD----FNGSWLPGLHRF----VGNNKVLLVG----NKADLIP 110 (368)
T ss_dssp -CHHHHHHHHHHH------------HSCCEEEEEEETTS----HHHHCCTTHHHH----SSSSCEEEEE----ECGGGSC
T ss_pred CHHHHHHHHHHHH------------CCCCEEEEEEECCC----CCCCHHHHHHHH----HCCCCEEEEE----ECHHCCC
T ss_conf 9899999999974------------04868999998988----850477889987----2898289999----8700597
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
Q ss_conf 99999999999999999862999863112213000212125781011018999998566668641024685089997205
Q 000717 619 TKLEKLQHLRVKFLRLVHRLGYSPEDSLVGQVLHRLSLIAGRQTGQLFSLDAAKTTALQLEAEEKDDLNFTLNILVLGKT 698 (1334)
Q Consensus 619 e~~eklq~l~vkFlrlv~RLGlsp~n~iVaQVLyrISA~hG~Gi~dLl~LD~v~~~a~e~eae~~edl~~~LRIVVVGkT 698 (1334)
.. ...+.+..++...+.+.|+.+.+ ++.+||.+|.|+.+++ ..+.... ...+|+++|.|
T Consensus 111 ~~-~~~~~~~~~l~~~~~~~g~~~~~------v~~iSA~~g~gi~~L~--~~l~~~~------------~~~~i~~vG~~ 169 (368)
T 3h2y_A 111 KS-VKHDKVKHWMRYSAKQLGLKPED------VFLISAAKGQGIAELA--DAIEYYR------------GGKDVYVVGCT 169 (368)
T ss_dssp TT-SCHHHHHHHHHHHHHHTTCCCSE------EEECCTTTCTTHHHHH--HHHHHHH------------TTSCEEEEEBT
T ss_pred CC-CCHHHHHHHHHHHHHHCCCCCCC------EEEEECCCCCCHHHHH--HHHHHHC------------CCCEEEEECCC
T ss_conf 42-38899999999999976998664------7999678786989998--5344414------------45448995277
Q ss_pred CCCHHHHHHHHCCCC------CCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHHC
Q ss_conf 998025566350997------40112579822248999988679389999499998898-64024899999999987408
Q 000717 699 GVGKSATINSIFGEE------KTSIHAFEPGTTSVKEIVGTVDGVKIRVIDTPGLKSSG-VEQGVNRKVLASIKKFTKKC 771 (1334)
Q Consensus 699 GVGKSSLINSLLGee------ra~Vss~~gtTtdv~~i~~evdGrkItIIDTPGL~ds~-i~e~iekkILkeIkkaIkk~ 771 (1334)
|+|||||+|+|++.. ...++..+++|+....+.. +..+.|+||||+.+.. ....... ..++.++...
T Consensus 170 nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~~---~~l~~~~~~~ 243 (368)
T 3h2y_A 170 NVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL---DEESSLYDTPGIINHHQMAHYVGK---QSLKLITPTK 243 (368)
T ss_dssp TSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES---SSSCEEEECCCBCCTTSGGGGSCH---HHHHHHSCSS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEECCCCCCEECCEEEEEE---CCCEEEEECCCCCCHHHHHHHHHH---HHHHHHCCCC
T ss_conf 8871089999876522455651201799974026499992---598499968885767788877669---9999763566
Q ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCC
Q ss_conf 9979999964898557878199999999771446776099999245789999
Q 000717 772 APDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLTHAASAPPD 823 (1334)
Q Consensus 772 gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLTKaD~LePD 823 (1334)
.++.++|+++....... .++..+..+. ....++++++||.|.+...
T Consensus 244 ~i~~~~~~l~~~~~~~~-g~l~~~d~l~-----~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 244 EIKPMVFQLNEEQTLFF-SGLARFDYVS-----GGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp CCCCEEEEECTTEEEEE-TTTEEEEEEE-----SSSEEEEEEECTTSCEEEE
T ss_pred CCCCEEEEECCCCEEEE-CCEEEEEEEC-----CCCCEEEEEECCCCCCCCC
T ss_conf 66736999869977887-5607999833-----7994699992686544555
No 10
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=1.00 E-value=1 Score=134.69 Aligned_cols=159 Identities=21% Similarity=0.257 Sum_probs=116.4
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHCCCCCCEECCCCC-CEEEEEEEEEEECCEEEEEEECCCCCCCCCCH-HHHHHHHHHH
Q ss_conf 685089997205998025566350997401125798-22248999988679389999499998898640-2489999999
Q 000717 687 NFTLNILVLGKTGVGKSATINSIFGEEKTSIHAFEP-GTTSVKEIVGTVDGVKIRVIDTPGLKSSGVEQ-GVNRKVLASI 764 (1334)
Q Consensus 687 ~~~LRIVVVGkTGVGKSSLINSLLGeera~Vss~~g-tTtdv~~i~~evdGrkItIIDTPGL~ds~i~e-~iekkILkeI 764 (1334)
...++|+|+|.+|+|||||+|+|++...+..+..+. +|+.+......+.+.++.||||||+.+..... ...+.+.+.+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99549999889999889999998499876557788850056678778868988999989199998777799999999999
Q ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEE-CCCCCCCCCCCCCCCCHHHHHHH-HHHH
Q ss_conf 998740899799999648985578781999999997714467760999992-45789999999998759999985-2399
Q 000717 765 KKFTKKCAPDIVLYVDRLDSQTRDLNDLPLLRSITNALGTQIWRSAIVTLT-HAASAPPDGPSGSPLSYEIFVAQ-RSHV 842 (1334)
Q Consensus 765 kkaIkk~gpDVVLLVIdld~~t~e~qDl~LLK~IkeiFG~eiwK~vIIVLT-KaD~LePDg~~g~PiSiEefIkq-rsk~ 842 (1334)
..++. .+|+++||++++++.. .+..+++.+.+.|+...+.+.|+|+| |+|.... .+..++.. ....
T Consensus 100 ~~~~~--~~d~il~V~d~~~~~~--~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~--------~~~~~i~~~~~~~ 167 (260)
T 2xtp_A 100 LLSAP--GPHVLLLVTQLGRYTS--QDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG--------SLMDYMHDSDNKA 167 (260)
T ss_dssp HHHTT--CCSEEEEEEETTCCCH--HHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC--------CHHHHHHHCCCHH
T ss_pred HHCCC--CCCEEEEEEECCCCCH--HHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCC--------CHHHHHHHCCHHH
T ss_conf 85599--9858999971887898--9999999999982811023479999846436875--------5999998204499
Q ss_pred HHHHHHHHCCCEEEC
Q ss_conf 999999840662504
Q 000717 843 VQQSIGQAVGDLRLM 857 (1334)
Q Consensus 843 LQElIeQcgGry~ll 857 (1334)
+++++..|..+++.+
T Consensus 168 ~~~~~~~~~~~~~~~ 182 (260)
T 2xtp_A 168 LSKLVAACGGRICAF 182 (260)
T ss_dssp HHHHHHHTTTCEEEC
T ss_pred HHHHHHHHCCEEEEE
T ss_conf 999999959968973
Done!