Query 000718
Match_columns 1334
No_of_seqs 221 out of 322
Neff 5.9
Searched_HMMs 46136
Date Mon Apr 1 22:39:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0414 Chromosome condensatio 100.0 2E-234 3E-239 2112.2 96.7 1184 1-1241 1-1205(1251)
2 COG5098 Chromosome condensatio 100.0 2E-185 4E-190 1593.5 68.8 1066 41-1165 29-1123(1128)
3 PF12717 Cnd1: non-SMC mitotic 100.0 2.8E-42 6E-47 367.4 15.8 165 989-1153 1-177 (178)
4 KOG0413 Uncharacterized conser 100.0 2.4E-33 5.3E-38 335.3 36.4 698 374-1234 470-1222(1529)
5 PF12922 Cnd1_N: non-SMC mitot 100.0 1.9E-33 4.1E-38 297.8 16.1 162 81-249 1-171 (171)
6 KOG0414 Chromosome condensatio 99.5 1.8E-09 3.9E-14 136.5 54.3 246 907-1154 919-1220(1251)
7 KOG1020 Sister chromatid cohes 99.0 3.5E-06 7.6E-11 109.4 43.5 591 374-1155 814-1499(1692)
8 PF01602 Adaptin_N: Adaptin N 98.8 4.6E-06 1E-10 103.1 33.8 153 264-443 25-179 (526)
9 PTZ00429 beta-adaptin; Provisi 98.6 0.00052 1.1E-08 88.3 43.8 151 272-448 59-211 (746)
10 PF12719 Cnd3: Nuclear condens 98.5 5.4E-06 1.2E-10 96.1 20.6 219 932-1156 26-286 (298)
11 PTZ00429 beta-adaptin; Provisi 98.2 0.00018 3.9E-09 92.4 25.0 215 908-1137 49-268 (746)
12 PF01602 Adaptin_N: Adaptin N 98.1 0.00036 7.9E-09 86.4 23.3 248 909-1175 24-277 (526)
13 PRK09687 putative lyase; Provi 98.0 0.00046 1E-08 79.6 21.3 149 935-1099 56-204 (280)
14 PLN03200 cellulose synthase-in 97.9 0.22 4.9E-06 70.0 47.5 411 560-1082 315-767 (2102)
15 PF12717 Cnd1: non-SMC mitotic 97.7 0.00055 1.2E-08 73.7 14.3 92 951-1043 1-93 (178)
16 PF12830 Nipped-B_C: Sister ch 97.6 0.00048 1E-08 74.9 12.6 153 1009-1161 4-177 (187)
17 KOG1060 Vesicle coat complex A 97.6 0.034 7.4E-07 69.9 29.4 427 252-808 40-513 (968)
18 KOG1293 Proteins containing ar 97.1 0.37 8.1E-06 60.2 29.5 133 941-1077 383-531 (678)
19 KOG1824 TATA-binding protein-i 97.1 1.8 4E-05 56.2 58.3 601 304-1044 352-1038(1233)
20 KOG1061 Vesicle coat complex A 96.8 0.0087 1.9E-07 75.3 12.2 188 951-1141 62-255 (734)
21 PF10508 Proteasom_PSMB: Prote 96.8 1.5 3.3E-05 55.1 32.1 351 647-1081 16-391 (503)
22 PF12348 CLASP_N: CLASP N term 96.7 0.014 3E-07 64.8 12.0 127 951-1079 66-206 (228)
23 PRK09687 putative lyase; Provi 96.5 0.056 1.2E-06 62.6 15.5 163 950-1135 103-265 (280)
24 COG5096 Vesicle coat complex, 96.5 0.15 3.3E-06 65.5 20.3 175 909-1097 37-213 (757)
25 cd00020 ARM Armadillo/beta-cat 96.2 0.016 3.4E-07 56.5 8.0 101 977-1078 9-119 (120)
26 KOG2023 Nuclear transport rece 96.2 1.1 2.3E-05 56.3 24.3 409 670-1190 175-615 (885)
27 cd00020 ARM Armadillo/beta-cat 96.1 0.041 8.9E-07 53.6 10.2 101 935-1041 9-119 (120)
28 PF04826 Arm_2: Armadillo-like 96.0 0.1 2.2E-06 59.6 14.1 128 950-1081 25-165 (254)
29 PF13646 HEAT_2: HEAT repeats; 95.7 0.028 6E-07 52.5 6.9 82 977-1070 1-83 (88)
30 PF10508 Proteasom_PSMB: Prote 95.7 1.7 3.6E-05 54.7 24.2 228 928-1163 72-327 (503)
31 PRK13800 putative oxidoreducta 95.4 0.083 1.8E-06 70.5 12.2 115 935-1072 777-892 (897)
32 PF12348 CLASP_N: CLASP N term 95.4 0.31 6.8E-06 54.0 15.0 134 301-448 66-209 (228)
33 COG5096 Vesicle coat complex, 95.4 0.2 4.4E-06 64.4 14.7 167 268-460 42-219 (757)
34 KOG2171 Karyopherin (importin) 95.4 16 0.00035 49.1 58.9 827 223-1191 49-1004(1075)
35 PF13646 HEAT_2: HEAT repeats; 95.0 0.14 2.9E-06 47.9 9.0 85 936-1038 2-88 (88)
36 KOG1248 Uncharacterized conser 94.9 21 0.00046 48.1 30.9 247 183-445 490-767 (1176)
37 KOG1062 Vesicle coat complex A 94.8 0.48 1E-05 60.4 15.1 205 933-1144 142-423 (866)
38 KOG1059 Vesicle coat complex A 94.6 1.8 3.9E-05 54.9 19.3 114 1054-1169 303-439 (877)
39 PLN03200 cellulose synthase-in 94.6 36 0.00079 49.3 48.2 245 935-1191 448-722 (2102)
40 KOG2023 Nuclear transport rece 94.4 0.33 7.3E-06 60.5 12.4 143 953-1096 143-304 (885)
41 PF13513 HEAT_EZ: HEAT-like re 94.4 0.035 7.6E-07 47.9 3.0 51 990-1040 1-55 (55)
42 KOG1020 Sister chromatid cohes 94.1 0.35 7.5E-06 65.1 12.2 154 928-1083 808-965 (1692)
43 COG5218 YCG1 Chromosome conden 93.8 1.7 3.7E-05 53.9 16.5 107 322-440 88-194 (885)
44 KOG1058 Vesicle coat complex C 93.8 1.8 3.9E-05 55.0 16.9 251 930-1190 131-427 (948)
45 PRK13800 putative oxidoreducta 93.6 0.43 9.3E-06 63.9 12.5 103 950-1071 633-735 (897)
46 KOG1525 Sister chromatid cohes 93.6 4.2 9E-05 55.8 21.2 156 281-446 203-406 (1266)
47 KOG1059 Vesicle coat complex A 92.4 0.53 1.1E-05 59.4 9.6 71 967-1038 136-206 (877)
48 PF05918 API5: Apoptosis inhib 91.6 6.4 0.00014 49.8 17.8 102 971-1076 55-159 (556)
49 KOG2259 Uncharacterized conser 91.1 0.91 2E-05 56.9 9.7 83 953-1075 388-471 (823)
50 PF10363 DUF2435: Protein of u 91.0 1.3 2.8E-05 43.1 8.7 72 377-448 4-75 (92)
51 KOG0213 Splicing factor 3b, su 90.8 23 0.0005 45.6 21.1 169 264-443 632-826 (1172)
52 KOG2025 Chromosome condensatio 90.7 4.8 0.0001 51.3 15.3 109 322-442 82-190 (892)
53 PF08506 Cse1: Cse1; InterPro 90.1 22 0.00047 43.2 20.1 207 225-438 110-368 (370)
54 KOG2011 Sister chromatid cohes 90.1 5.1 0.00011 53.5 15.7 91 988-1080 299-400 (1048)
55 PF03224 V-ATPase_H_N: V-ATPas 89.9 3.7 8.1E-05 48.3 13.3 73 977-1050 57-142 (312)
56 KOG2025 Chromosome condensatio 89.9 1.4 3.1E-05 55.6 9.9 70 374-443 83-153 (892)
57 PF12765 Cohesin_HEAT: HEAT re 89.9 0.29 6.3E-06 40.6 2.9 26 415-440 17-42 (42)
58 COG5240 SEC21 Vesicle coat com 89.4 3.4 7.3E-05 51.3 12.3 128 953-1081 428-557 (898)
59 cd03572 ENTH_epsin_related ENT 88.7 1.5 3.2E-05 44.8 7.6 35 374-408 36-70 (122)
60 KOG1248 Uncharacterized conser 88.6 40 0.00087 45.7 21.9 173 248-447 720-900 (1176)
61 KOG2171 Karyopherin (importin) 88.4 1.1E+02 0.0025 41.5 63.1 236 176-449 223-465 (1075)
62 PF10363 DUF2435: Protein of u 88.2 1.9 4.2E-05 41.9 7.6 78 1016-1093 6-86 (92)
63 PF04826 Arm_2: Armadillo-like 88.0 5 0.00011 46.1 12.1 124 974-1098 11-145 (254)
64 KOG1062 Vesicle coat complex A 87.9 13 0.00028 48.2 16.3 91 950-1043 119-209 (866)
65 COG5098 Chromosome condensatio 87.6 3.9 8.5E-05 51.6 11.4 126 957-1083 281-419 (1128)
66 KOG1060 Vesicle coat complex A 87.5 1.1E+02 0.0023 40.3 31.5 132 959-1097 372-510 (968)
67 KOG1078 Vesicle coat complex C 87.4 1.1E+02 0.0024 40.2 34.8 77 1012-1089 465-541 (865)
68 PF13513 HEAT_EZ: HEAT-like re 87.1 1.7 3.7E-05 37.3 6.0 51 952-1003 1-55 (55)
69 cd00256 VATPase_H VATPase_H, r 87.0 28 0.00062 43.0 18.3 76 974-1050 52-138 (429)
70 PF05918 API5: Apoptosis inhib 86.9 44 0.00095 42.6 20.2 91 950-1047 71-170 (556)
71 KOG1991 Nuclear transport rece 86.8 1.3E+02 0.0028 40.4 39.0 140 301-451 384-538 (1010)
72 KOG2259 Uncharacterized conser 86.6 1.6 3.4E-05 54.9 7.3 46 992-1038 426-471 (823)
73 KOG1061 Vesicle coat complex A 85.5 1.3E+02 0.0029 39.3 23.7 160 277-463 45-209 (734)
74 KOG1824 TATA-binding protein-i 85.4 1.5E+02 0.0032 39.8 50.0 231 200-449 41-290 (1233)
75 PF12460 MMS19_C: RNAPII trans 85.4 87 0.0019 38.5 21.7 74 373-448 316-397 (415)
76 TIGR02270 conserved hypothetic 83.1 6.1 0.00013 48.4 10.4 105 950-1074 98-202 (410)
77 KOG1242 Protein containing ada 82.0 1.6E+02 0.0035 37.6 24.1 264 374-744 172-449 (569)
78 PF12755 Vac14_Fab1_bd: Vacuol 81.4 11 0.00025 36.9 9.6 92 341-444 2-95 (97)
79 PF02985 HEAT: HEAT repeat; I 81.4 2 4.3E-05 33.0 3.5 26 1016-1041 3-28 (31)
80 KOG0413 Uncharacterized conser 81.3 2.3 5E-05 55.2 5.8 197 990-1192 945-1155(1529)
81 cd00197 VHS_ENTH_ANTH VHS, ENT 80.3 5.9 0.00013 39.6 7.4 84 995-1078 19-114 (115)
82 KOG0211 Protein phosphatase 2A 80.1 24 0.00052 46.4 14.6 167 268-450 501-669 (759)
83 COG5218 YCG1 Chromosome conden 80.0 13 0.00028 46.6 11.3 70 374-443 89-159 (885)
84 PF12755 Vac14_Fab1_bd: Vacuol 79.8 14 0.00031 36.3 9.6 87 307-404 9-95 (97)
85 KOG1241 Karyopherin (importin) 79.7 33 0.00071 44.5 14.9 138 281-427 319-460 (859)
86 PF11698 V-ATPase_H_C: V-ATPas 78.8 3.1 6.6E-05 42.4 4.8 65 977-1044 45-117 (119)
87 KOG2274 Predicted importin 9 [ 77.3 1.2E+02 0.0026 40.4 18.9 228 928-1157 521-782 (1005)
88 KOG0166 Karyopherin (importin) 77.2 24 0.00051 44.3 12.6 137 950-1088 122-274 (514)
89 PF12765 Cohesin_HEAT: HEAT re 76.5 2.4 5.1E-05 35.3 2.7 38 1000-1037 3-42 (42)
90 PF12830 Nipped-B_C: Sister ch 76.3 8.7 0.00019 42.0 7.9 72 374-448 6-77 (187)
91 TIGR02270 conserved hypothetic 75.7 11 0.00024 46.2 9.4 76 950-1039 129-204 (410)
92 KOG1240 Protein kinase contain 74.6 41 0.00089 45.7 14.2 154 936-1095 581-742 (1431)
93 KOG1241 Karyopherin (importin) 74.6 2.9E+02 0.0063 36.5 22.3 181 950-1133 229-457 (859)
94 PF12719 Cnd3: Nuclear condens 74.2 67 0.0015 37.6 15.0 59 985-1043 36-94 (298)
95 COG1413 FOG: HEAT repeat [Ener 74.0 1.8E+02 0.004 34.1 18.8 93 975-1080 43-136 (335)
96 KOG1525 Sister chromatid cohes 73.9 57 0.0012 45.4 15.9 107 933-1043 297-406 (1266)
97 KOG2160 Armadillo/beta-catenin 73.8 20 0.00044 42.7 10.4 108 933-1047 125-245 (342)
98 PF13001 Ecm29: Proteasome sta 73.7 31 0.00066 43.6 12.8 147 256-417 349-499 (501)
99 COG1413 FOG: HEAT repeat [Ener 73.6 1E+02 0.0022 36.3 16.5 78 339-443 163-240 (335)
100 PF02985 HEAT: HEAT repeat; I 73.3 5.6 0.00012 30.5 3.9 28 418-445 2-29 (31)
101 COG5181 HSH155 U2 snRNP splice 72.5 2.9E+02 0.0064 35.6 31.8 141 950-1097 777-931 (975)
102 PF14228 MOR2-PAG1_mid: Cell m 72.4 41 0.0009 46.2 14.1 247 956-1213 483-759 (1120)
103 KOG4653 Uncharacterized conser 72.1 56 0.0012 43.1 14.2 132 301-445 781-918 (982)
104 PF08713 DNA_alkylation: DNA a 70.2 12 0.00027 40.9 7.4 130 952-1091 65-196 (213)
105 PF14500 MMS19_N: Dos2-interac 70.2 25 0.00055 40.6 10.1 110 329-448 3-114 (262)
106 KOG1967 DNA repair/transcripti 69.8 1.3E+02 0.0029 40.1 16.8 219 201-439 764-1018(1030)
107 KOG2062 26S proteasome regulat 69.5 16 0.00034 47.1 8.6 85 950-1040 567-651 (929)
108 COG5215 KAP95 Karyopherin (imp 68.9 39 0.00085 42.5 11.5 106 975-1098 597-708 (858)
109 KOG0915 Uncharacterized conser 67.8 4.5E+02 0.0097 37.5 21.5 254 947-1206 1007-1321(1702)
110 PF12726 SEN1_N: SEN1 N termin 64.5 1E+02 0.0022 40.8 15.2 151 970-1120 33-201 (727)
111 KOG1077 Vesicle coat complex A 63.8 4.6E+02 0.0099 34.5 20.6 281 328-657 114-425 (938)
112 PF08569 Mo25: Mo25-like; Int 62.7 3.4E+02 0.0074 32.7 18.8 208 225-472 90-305 (335)
113 KOG2149 Uncharacterized conser 61.2 18 0.00038 43.8 6.6 73 374-446 56-129 (393)
114 cd00197 VHS_ENTH_ANTH VHS, ENT 58.7 35 0.00075 34.1 7.4 69 375-443 36-113 (115)
115 cd06561 AlkD_like A new struct 56.5 1.1E+02 0.0024 33.0 11.5 129 954-1091 52-182 (197)
116 PF14228 MOR2-PAG1_mid: Cell m 56.4 6.7E+02 0.015 35.2 20.7 261 175-443 258-570 (1120)
117 smart00638 LPD_N Lipoprotein N 55.2 68 0.0015 41.0 11.0 130 938-1072 398-538 (574)
118 cd07064 AlkD_like_1 A new stru 55.0 1.6E+02 0.0034 32.9 12.5 132 953-1094 61-194 (208)
119 cd03572 ENTH_epsin_related ENT 54.6 8.1 0.00018 39.6 2.1 46 999-1044 24-69 (122)
120 PF14500 MMS19_N: Dos2-interac 53.5 1.3E+02 0.0029 34.8 12.0 149 986-1155 9-176 (262)
121 KOG1240 Protein kinase contain 52.2 7.1E+02 0.015 34.8 19.0 239 193-445 448-725 (1431)
122 smart00544 MA3 Domain in DAP-5 51.1 1E+02 0.0022 30.4 9.4 73 374-446 34-109 (113)
123 KOG1242 Protein containing ada 50.2 6.8E+02 0.015 32.3 29.1 212 910-1136 317-546 (569)
124 COG5116 RPN2 26S proteasome re 49.8 50 0.0011 41.5 7.9 111 950-1080 564-674 (926)
125 cd03561 VHS VHS domain family; 49.8 81 0.0018 32.5 8.6 87 995-1081 19-114 (133)
126 PF03378 CAS_CSE1: CAS/CSE pro 49.8 1.1E+02 0.0023 38.2 11.1 241 928-1209 66-323 (435)
127 PF08767 CRM1_C: CRM1 C termin 49.3 2E+02 0.0044 34.2 12.9 170 932-1110 117-307 (319)
128 KOG1077 Vesicle coat complex A 49.2 1E+02 0.0022 40.0 10.5 138 957-1097 93-234 (938)
129 KOG2038 CAATT-binding transcri 48.8 45 0.00097 43.3 7.5 74 374-450 302-375 (988)
130 KOG1517 Guanine nucleotide bin 47.3 62 0.0013 43.5 8.6 112 951-1070 613-754 (1387)
131 KOG0166 Karyopherin (importin) 47.2 92 0.002 39.3 9.8 129 935-1068 154-297 (514)
132 KOG0368 Acetyl-CoA carboxylase 46.7 4.2E+02 0.0091 37.7 15.8 196 197-402 838-1080(2196)
133 KOG1820 Microtubule-associated 45.6 3.5E+02 0.0076 36.4 15.2 133 301-449 308-447 (815)
134 PF11732 Thoc2: Transcription- 45.5 55 0.0012 31.1 5.9 72 241-316 5-76 (77)
135 KOG2062 26S proteasome regulat 45.0 4E+02 0.0087 35.2 14.7 212 558-794 516-743 (929)
136 PF12422 Condensin2nSMC: Conde 44.5 2E+02 0.0043 30.6 10.7 121 311-443 19-146 (152)
137 KOG2160 Armadillo/beta-catenin 44.4 1.4E+02 0.0029 36.0 10.2 115 327-450 126-245 (342)
138 PF05004 IFRD: Interferon-rela 42.8 5.2E+02 0.011 30.7 14.9 180 910-1096 65-278 (309)
139 KOG0212 Uncharacterized conser 42.1 8.8E+02 0.019 31.3 27.9 369 632-1081 3-408 (675)
140 PF08569 Mo25: Mo25-like; Int 42.1 1.6E+02 0.0035 35.4 10.6 114 961-1080 155-284 (335)
141 PF01347 Vitellogenin_N: Lipop 41.4 2.3E+02 0.0049 36.5 12.7 160 962-1134 418-601 (618)
142 KOG1243 Protein kinase [Genera 41.1 42 0.00091 43.3 5.7 141 928-1080 364-516 (690)
143 PF05997 Nop52: Nucleolar prot 41.1 4.9E+02 0.011 29.3 13.7 183 936-1132 4-211 (217)
144 PF03965 Penicillinase_R: Peni 40.4 25 0.00055 35.2 3.1 92 1015-1113 20-113 (115)
145 PF05804 KAP: Kinesin-associat 40.3 1.1E+03 0.023 31.7 34.2 218 950-1174 302-542 (708)
146 PF11864 DUF3384: Domain of un 39.5 8.7E+02 0.019 30.5 29.8 342 68-443 50-464 (464)
147 PF08631 SPO22: Meiosis protei 38.9 6.7E+02 0.015 29.0 18.5 177 208-396 58-245 (278)
148 PF08167 RIX1: rRNA processing 38.0 2.2E+02 0.0048 30.5 10.0 72 928-1004 20-96 (165)
149 KOG2759 Vacuolar H+-ATPase V1 37.8 36 0.00078 41.5 4.2 68 977-1044 368-440 (442)
150 PF02847 MA3: MA3 domain; Int 37.7 1.5E+02 0.0032 29.1 8.1 72 374-445 34-108 (113)
151 KOG1991 Nuclear transport rece 37.5 5.2E+02 0.011 35.2 14.6 41 409-449 762-804 (1010)
152 PF14764 SPG48: AP-5 complex s 37.5 2.8E+02 0.0061 34.8 11.7 113 276-393 253-370 (459)
153 KOG1078 Vesicle coat complex C 37.3 1E+03 0.022 32.0 16.6 152 312-466 378-559 (865)
154 KOG2956 CLIP-associating prote 37.1 4.7E+02 0.01 32.9 13.3 194 173-386 301-507 (516)
155 COG5369 Uncharacterized conser 36.1 1.3E+02 0.0027 38.1 8.4 123 952-1075 402-541 (743)
156 PF01347 Vitellogenin_N: Lipop 36.0 84 0.0018 40.4 7.6 163 940-1117 438-617 (618)
157 PLN03076 ARF guanine nucleotid 35.4 1.1E+03 0.025 34.7 18.5 101 579-679 678-794 (1780)
158 KOG2038 CAATT-binding transcri 34.9 96 0.0021 40.5 7.4 82 1015-1097 306-387 (988)
159 PF00514 Arm: Armadillo/beta-c 34.7 53 0.0012 26.5 3.6 26 1015-1040 14-39 (41)
160 PF04118 Dopey_N: Dopey, N-ter 34.1 2.8E+02 0.0062 33.0 10.8 83 377-464 174-275 (307)
161 KOG2933 Uncharacterized conser 33.9 2.4E+02 0.0053 33.5 9.9 116 309-439 109-228 (334)
162 PF05004 IFRD: Interferon-rela 33.9 2.2E+02 0.0049 33.7 10.0 109 929-1040 125-255 (309)
163 PF02268 TFIIA_gamma_N: Transc 33.8 68 0.0015 27.9 4.1 29 651-679 13-41 (49)
164 cd03567 VHS_GGA VHS domain fam 33.8 1.6E+02 0.0034 31.0 7.7 86 995-1080 20-117 (139)
165 PF13251 DUF4042: Domain of un 33.7 5.3E+02 0.011 28.4 12.1 122 992-1118 2-155 (182)
166 PF14631 FancD2: Fanconi anaem 33.7 2.4E+02 0.0052 40.4 11.6 93 606-702 443-542 (1426)
167 KOG2149 Uncharacterized conser 32.9 1.9E+02 0.004 35.5 9.0 72 1014-1092 59-134 (393)
168 PF11841 DUF3361: Domain of un 32.2 3.1E+02 0.0068 29.7 9.7 108 974-1081 10-133 (160)
169 PF12530 DUF3730: Protein of u 32.1 4.2E+02 0.0091 30.1 11.5 121 951-1072 51-183 (234)
170 PF14838 INTS5_C: Integrator c 32.0 1.1E+03 0.023 31.4 16.1 53 223-278 192-245 (696)
171 KOG0946 ER-Golgi vesicle-tethe 31.6 1.1E+03 0.023 31.9 15.5 184 228-447 40-243 (970)
172 KOG2137 Protein kinase [Signal 31.4 6.8E+02 0.015 33.0 14.0 158 958-1117 366-538 (700)
173 PF14165 YtzH: YtzH-like prote 31.3 69 0.0015 31.0 4.2 40 645-684 23-62 (87)
174 PF14676 FANCI_S2: FANCI solen 31.2 5.7E+02 0.012 27.5 11.6 85 305-400 72-156 (158)
175 KOG1243 Protein kinase [Genera 30.5 1.5E+02 0.0032 38.6 8.1 116 958-1077 314-435 (690)
176 PF14225 MOR2-PAG1_C: Cell mor 30.0 4.5E+02 0.0097 30.6 11.4 86 264-356 133-219 (262)
177 PF11838 ERAP1_C: ERAP1-like C 30.0 9.1E+02 0.02 27.9 14.5 105 1062-1186 141-245 (324)
178 COG5181 HSH155 U2 snRNP splice 30.0 1.2E+03 0.025 30.6 15.1 214 208-440 728-942 (975)
179 PF03224 V-ATPase_H_N: V-ATPas 29.5 4.9E+02 0.011 30.6 12.0 174 933-1114 106-309 (312)
180 PF09759 Atx10homo_assoc: Spin 29.3 1.4E+02 0.003 29.9 6.1 79 341-437 2-82 (102)
181 PF12231 Rif1_N: Rap1-interact 28.5 1.1E+03 0.025 28.5 18.1 202 202-444 85-302 (372)
182 PF08167 RIX1: rRNA processing 28.2 1.5E+02 0.0032 31.8 6.7 85 933-1021 67-159 (165)
183 cd03561 VHS VHS domain family; 28.2 2.2E+02 0.0049 29.3 7.8 74 375-448 36-115 (133)
184 KOG4199 Uncharacterized conser 27.7 7.2E+02 0.016 30.2 12.3 161 561-742 189-358 (461)
185 PF01417 ENTH: ENTH domain; I 27.7 1.7E+02 0.0037 29.8 6.7 70 374-443 37-119 (125)
186 PF07539 DRIM: Down-regulated 27.0 5.8E+02 0.013 26.9 10.6 114 597-722 16-140 (141)
187 KOG2213 Apoptosis inhibitor 5/ 26.9 1.8E+02 0.0039 35.6 7.4 35 1005-1039 53-87 (460)
188 COG1283 NptA Na+/phosphate sym 26.6 1.3E+03 0.029 29.7 15.2 121 1083-1220 376-498 (533)
189 KOG2140 Uncharacterized conser 26.3 5.1E+02 0.011 33.0 11.1 107 248-358 199-311 (739)
190 KOG1949 Uncharacterized conser 26.3 3.1E+02 0.0068 35.9 9.6 123 316-449 211-334 (1005)
191 cd03571 ENTH_epsin ENTH domain 26.1 2.2E+02 0.0048 29.3 7.2 69 374-442 35-115 (123)
192 KOG0213 Splicing factor 3b, su 25.6 1.8E+03 0.038 29.8 37.5 201 249-450 362-588 (1172)
193 KOG0567 HEAT repeat-containing 25.4 4.4E+02 0.0095 30.9 9.8 109 912-1040 156-278 (289)
194 KOG2956 CLIP-associating prote 25.4 1.2E+03 0.027 29.4 14.1 139 952-1096 301-453 (516)
195 PF01417 ENTH: ENTH domain; I 25.1 1.3E+02 0.0027 30.7 5.3 61 989-1050 16-79 (125)
196 PF06133 DUF964: Protein of un 24.5 3.2E+02 0.007 26.8 7.9 67 1163-1231 2-72 (108)
197 PRK03907 fliE flagellar hook-b 24.4 2.2E+02 0.0047 28.3 6.4 64 547-626 30-93 (97)
198 PF11422 IBP39: Initiator bind 24.4 1.2E+02 0.0025 33.2 4.9 53 393-447 18-71 (181)
199 cd03569 VHS_Hrs_Vps27p VHS dom 24.3 2.9E+02 0.0063 29.0 7.9 103 995-1097 23-133 (142)
200 PF12074 DUF3554: Domain of un 24.1 1.3E+03 0.027 27.5 16.9 193 248-448 6-238 (339)
201 COG5537 IRR1 Cohesin [Cell div 23.9 1.7E+03 0.038 29.1 15.3 126 986-1117 285-421 (740)
202 KOG2011 Sister chromatid cohes 23.5 1.3E+03 0.028 32.1 15.0 63 382-446 293-356 (1048)
203 PF00514 Arm: Armadillo/beta-c 23.5 90 0.0019 25.2 3.1 28 976-1004 13-40 (41)
204 KOG1293 Proteins containing ar 23.3 4.7E+02 0.01 34.1 10.5 127 306-445 402-533 (678)
205 smart00543 MIF4G Middle domain 22.7 9.3E+02 0.02 25.5 12.2 137 225-388 31-177 (200)
206 PF01603 B56: Protein phosphat 22.6 1.4E+03 0.03 28.3 14.5 167 1052-1226 135-317 (409)
207 COG5593 Nucleic-acid-binding p 22.6 8.5E+02 0.018 31.1 12.0 128 305-448 119-260 (821)
208 PF10408 Ufd2P_core: Ubiquitin 22.2 8.3E+02 0.018 31.9 13.1 185 127-332 246-447 (629)
209 PHA00438 hypothetical protein 22.1 2.4E+02 0.0053 26.8 5.8 70 209-290 2-71 (81)
210 KOG2274 Predicted importin 9 [ 22.1 1E+03 0.022 32.5 13.2 145 951-1099 463-625 (1005)
211 PF00790 VHS: VHS domain; Int 21.5 4.4E+02 0.0095 27.4 8.5 90 375-466 41-137 (140)
212 PF00790 VHS: VHS domain; Int 21.4 2.7E+02 0.006 28.9 7.0 102 995-1096 24-136 (140)
213 KOG2973 Uncharacterized conser 21.0 4.3E+02 0.0092 31.7 8.8 144 1017-1165 7-171 (353)
214 PF05804 KAP: Kinesin-associat 20.8 2.1E+03 0.046 28.9 19.1 99 727-849 504-607 (708)
215 PF02854 MIF4G: MIF4G domain; 20.7 1E+03 0.022 25.2 11.5 77 300-387 98-185 (209)
216 smart00582 RPR domain present 20.0 3.1E+02 0.0066 27.4 6.8 62 1089-1157 2-63 (121)
217 KOG1517 Guanine nucleotide bin 20.0 4.5E+02 0.0098 36.1 9.6 92 988-1079 612-732 (1387)
No 1
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-234 Score=2112.18 Aligned_cols=1184 Identities=40% Similarity=0.603 Sum_probs=1048.0
Q ss_pred CCccccccCChhhhhhccCcCCCCCcceecCCCCCCCCChhhHHHHhhhccccccccCcccccccchhHHHHHHHhcCCC
Q 000718 1 MTRNFVFPQNLQALEEQEDEEHDGNRLYAQNPISITSMHPSELVEFVKGVSFDLSDKELFCIEEQDLFDRVYSLIRNFSS 80 (1334)
Q Consensus 1 m~~~F~iP~~~~dLl~~~~~~~~~~~y~V~~~~~~~~l~~~~L~~~~~~~~~~~~~~~p~~I~d~~~FD~lysll~~f~~ 80 (1334)
|..+|+.|++..++. .++ ++.+|+|.++.++.+++. ++.++. . ..+..+|+++.| |||++||++++|.+
T Consensus 1 ~~~~~~~~l~~~~~~---~~~-~~~~~~~~~~~~~~e~~~-k~~~~~--~--~~~~~~~~~~~d--~ld~vysl~~~f~s 69 (1251)
T KOG0414|consen 1 QDLQFLLPLSEYDLI---NSS-GDPQYVVKEIFSAQELPV-KLDEFD--R--SVRLMDPDFDLD--HLDTVYSLLEDFES 69 (1251)
T ss_pred CcchhhcCCCHHHHH---hcc-CCHHHHHHhcccccccch-hHHHHH--h--hhhhcCchhhHH--HHHHHHHHHhchhh
Confidence 568999999999998 666 778999999999999999 999998 5 677889988888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC---Cc
Q 000718 81 LSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP---KV 157 (1334)
Q Consensus 81 l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~~~~~~---~~ 157 (1334)
++|++|+.+.+.+.++++++...+...+.......+..+ .+|+||+|||.|+...++...+....+.... ..
T Consensus 70 l~~s~q~~~~~~l~s~lsvls~~~~~~~~~~~~~~~~~~-----~s~lna~km~~f~qi~v~~~~e~~~~s~~~~~~l~~ 144 (1251)
T KOG0414|consen 70 LAPSLQNWLSEFLRSNLSVLSADLDAILDSTACLFTDLS-----NSYLNALKMGPFLQILVTKLKENGVSSVRRDQNLNV 144 (1251)
T ss_pred cCHHHHHHHHHHHHHHHHhhccccccchhhhhccccccc-----HHHHHHHHHHHHHHHHHHHHHhccchhhhhchhhhh
Confidence 999999999999999999999999998877542211111 7899999999999999999988765433211 23
Q ss_pred ccccccC--CCCCCccchhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHH
Q 000718 158 TASTRKK--QPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRII 235 (1334)
Q Consensus 158 ~~k~kK~--~~~~~~~W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il 235 (1334)
.||+||. ....+|+|+.+|+++|.+|.++|++||++||.+++++|+|+++|++|||+++||+.+.|+.+++++||+||
T Consensus 145 ~~k~kk~~~n~~~~~~~e~~r~~~l~~i~~lLqinlskL~~~s~~~e~flsl~~~~~yrllEn~~~~k~~~t~~ai~~il 224 (1251)
T KOG0414|consen 145 SGKLKKQSGNLASGFNWEKQRNKLLCLIAQLLQINLSKLWLTSVEDEDFLSLIVDPIYRLLENEHVNKNSSTKDAIFRIL 224 (1251)
T ss_pred hccccCcccchhhccccccccchHHHHHHHHHHhhHHHhcCCChhHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 3454444 33446999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHH
Q 000718 236 GACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVEL 315 (1334)
Q Consensus 236 ~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~L 315 (1334)
|.++|+|||..+++++|+|+|+||+|++.+.|+++..+..+||+.+|++.|||+|++.+|++ +|++|+|+++.||++|
T Consensus 225 g~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~--~d~~g~k~v~~fL~el 302 (1251)
T KOG0414|consen 225 GSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNE--KDCAGPKIVGNFLVEL 302 (1251)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhc--ccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred HhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHH
Q 000718 316 ADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSR 395 (1334)
Q Consensus 316 ae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRsk 395 (1334)
|+++|++++++|+.|++|||+|||+|||||+++|||+|.+.++++++++..|+. |+.|+++|.||++|+|||||+|
T Consensus 303 S~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~----r~~~le~l~erl~Dvsa~vRsk 378 (1251)
T KOG0414|consen 303 SERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSL----RDELLELLRERLLDVSAYVRSK 378 (1251)
T ss_pred HHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH----HHHHHHHHHHHhhcccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 8999999999999999999999
Q ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcc-cCC
Q 000718 396 VLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNG-LEP 474 (1334)
Q Consensus 396 vLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~~~~~~Le~~~~~L~~-l~~ 474 (1334)
|||+|.+||+.+++|+++|++|+++|+|||+|||++|||+||||+..+|.+|||+++++.+++.+.+|++..+|++ .++
T Consensus 379 VLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~ 458 (1251)
T KOG0414|consen 379 VLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELES 458 (1251)
T ss_pred HHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888873 322
Q ss_pred CCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHH
Q 000718 475 DIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLR 554 (1334)
Q Consensus 475 ~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~dal~ 554 (1334)
.....++. .+.....+..+..++.+.+.+....+....+..-++.. .......+.+..++++|++++++||+|++.
T Consensus 459 t~~l~~e~---~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~-~~~~~~~s~~~~~~i~q~~~~vq~l~d~~s 534 (1251)
T KOG0414|consen 459 TEHLEEEE---MTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC-LLENEVESVPAENEIMQLKALVQFLEDAIS 534 (1251)
T ss_pred ccccchhh---ccchhhhhcccceeechhhhhhhccccccccccchhhh-hhhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 11111100 00000000000001111111111000000000000000 000011134556689999999999999999
Q ss_pred HHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhcccCccHHHHHHHHHHHhhcCCC----
Q 000718 555 FSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKS---- 630 (1334)
Q Consensus 555 Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd~~V~~~vi~ay~~Ly~~~~---- 630 (1334)
|++.|++|+|.+.+||+|+|++||.|+|+||++|++|||+||+.||||||||||++|++|+++|++||+++||+++
T Consensus 535 f~~~ms~~~~ii~~ll~s~t~teV~E~Idfl~~c~~F~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~ 614 (1251)
T KOG0414|consen 535 FSDEMSEAIPIISQLLFSKTTTEVKEAIDFLVRCKQFGIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSK 614 (1251)
T ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhCCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhh
Q 000718 631 ---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAV 707 (1334)
Q Consensus 631 ---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~a~~~i 707 (1334)
++.+|+||+.++.+++.||++|||+++++|+.+|.|++.||++||++|+.+..+++.+++|||++||||+|+++|+|
T Consensus 615 ~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~I 694 (1251)
T KOG0414|consen 615 ASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVARGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSI 694 (1251)
T ss_pred hhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhh
Confidence 47889999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccc--cccccccccccHHHHHHHHHHc-cCCCCCCchHHHHHHHHH
Q 000718 708 LGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQE--DKKKLLLSYGSRVFATLESLIT-GFWLPDNIWYTAADKAIS 784 (1334)
Q Consensus 708 v~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~--~k~~~r~~~~~~if~~L~~~l~-~~~~~~~~W~~~aeqaIn 784 (1334)
+.+|++.|++||+|+++..+..|++|+|++..|..+. ..+.++++.+|.+|+.|..++. +|..++++||+++++||.
T Consensus 695 v~~~~~~lv~iglg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais 774 (1251)
T KOG0414|consen 695 VLANLDLLVQIGLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAIS 774 (1251)
T ss_pred hhhhhHHHHHhccCcHHHHHHHHHHHHHhhcccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999843 3334899999999999999998 677788999999999999
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHhhcccC-CCCCCCCCCCCCCCCCCCccHhHHHH-HHHHHHHHHHHHHHHHHHHHH-H
Q 000718 785 AIYTIHPTPETLAVDLVKKSLSAVFDYVG-GEEPHNGIDCVGTSMPTSVQVSKLGR-YLFILSHIAMNQLVYIESCVC-E 861 (1334)
Q Consensus 785 aIy~l~~~Pd~l~~~iIk~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~Lsq-llFivGhVAlk~lV~lE~~~~-~ 861 (1334)
+||.||+.||++|..||+.++.+.|+... +..+.++++..+. ...++..+.. |+|++||||+||+||||.|++ +
T Consensus 775 ~Iy~is~~Pe~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~---~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~ 851 (1251)
T KOG0414|consen 775 AIYSISMLPEVLATQLIRKLLKQDFESLECEADTITDDPRKSD---ALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKE 851 (1251)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHhhhhhhhhccccCCccccc---ccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 3222222222111 2467888999 999999999999999999999 6
Q ss_pred HHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc--cchhhhhhhhHHHHHhhhccCCCCCCchhhhhhHHHH
Q 000718 862 IRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA--ASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLS 939 (1334)
Q Consensus 862 lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~--t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~ 939 (1334)
+|||+...+..+++.++...+ .+..+++...+.|+|++ |+||+++|+|+.|||+||+||+ ++|||+|+|+|+
T Consensus 852 ~kRr~~~~~~~e~k~~N~~e~---~s~t~~~~~~~~e~dlig~tseDd~~d~i~~icE~eLl~ge---k~lLg~f~piv~ 925 (1251)
T KOG0414|consen 852 FKRRKIKTELEEKKDKNQREN---LSNTQRETQFTVELDLIGGTSEDDLADLISGICEKELLYGE---KSLLGRFAPIVV 925 (1251)
T ss_pred HHHHHHHHHHHhhcccCchhh---hccccccccCCccccccCCCcchhHHHHHHHHHHHHHhcCh---HHHHHHHHHHHH
Confidence 999998444333322211111 02234456778899998 8999999999999999999998 999999999999
Q ss_pred HHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHh
Q 000718 940 KFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMY 1019 (1334)
Q Consensus 940 ~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly 1019 (1334)
++|+||+.| +||.||+||++|||||||+|++||+.|+|+|||+|+++|+|.||||+|+|||||++||||++||||+++|
T Consensus 926 e~c~n~~~~-sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly 1004 (1251)
T KOG0414|consen 926 EGCRNPGLF-SDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLY 1004 (1251)
T ss_pred HHhcCCCcC-CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHH
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC
Q 000718 1020 ARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ 1099 (1334)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~ 1099 (1334)
++|+|+++.||+||++||||||+|||||||||+++||+||+|||++|+++||.||+||+.|+ |+|||++|||||||||+
T Consensus 1005 ~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~-n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1005 RRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG-NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc-cchhhhchHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHH
Q 000718 1100 NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSV 1179 (1334)
Q Consensus 1100 ~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V 1179 (1334)
++++++|++||+||+++|+|| | ||+..+++| |||++|||+||++||++++|.+|.+|++++.|
T Consensus 1084 ~l~~~~~~~vm~~li~~ikkd---e--------rf~~~~~~r------ycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v 1146 (1251)
T KOG0414|consen 1084 NLEEESYKTVMEFLIGLIKKD---E--------RFSADRIER------YCLSLLTTTERGSKKLKDLFTALAKKVQNDSV 1146 (1251)
T ss_pred cccchhhHHHHHHHHHHhccc---c--------cccccccch------hhhcccccchhhhhhHHHHHHHHHHHhhhhHH
Confidence 999999999999999999998 2 999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhcccCcccc
Q 000718 1180 MDNFRNIINKSKKFAKPEVKVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVNTMGNSVA 1241 (1334)
Q Consensus 1180 ~~~F~~Ii~k~kk~~k~e~K~~i~EfE~kl~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~ 1241 (1334)
|++|+.|++|.+|++|||+|++++|||+||++||..++++ +..+|.+.++++.++.+..
T Consensus 1147 ~~~f~diis~~sk~a~pe~ka~~~efe~ki~~~h~~~~~~---~~~~Q~~e~~~~~~~~~~~ 1205 (1251)
T KOG0414|consen 1147 YNNFIDIISKLSKFAKPELKAVIDEFEEKIKECHSFKKDE---RHKAQLVEELTPRLKKCST 1205 (1251)
T ss_pred HHHHHHHHHHhccccCchhhHHHHHHHHHHHHHHhcchhH---HHHHHHHHHHhHHhhcccc
Confidence 9999999999999999999999999999999999999888 5667777777776655543
No 2
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=100.00 E-value=1.7e-185 Score=1593.48 Aligned_cols=1066 Identities=22% Similarity=0.325 Sum_probs=934.1
Q ss_pred hhHHHHhhhccccccccCccccc-ccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCc
Q 000718 41 SELVEFVKGVSFDLSDKELFCIE-EQDLFDRVYSLIRNFSSLSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETP 119 (1334)
Q Consensus 41 ~~L~~~~~~~~~~~~~~~p~~I~-d~~~FD~lysll~~f~~l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~ 119 (1334)
.+++..++.. ++ + ..|. +||..+.++.++|+|+++++.++.++.+++.++++.....+..++++.- + -.
T Consensus 29 ~~ln~iid~l--~v---~-~q~~~~~d~le~l~~lc~~f~~l~~~l~~~is~L~ts~vs~~s~d~~~~vS~n~---n-ft 98 (1128)
T COG5098 29 RELNVIIDQL--AV---S-EQIDASPDSLEALIDLCHDFPHLQKELEILISKLKTSTVSDNSEDYNYLVSHNV---N-FT 98 (1128)
T ss_pred HHHHHHHHHH--Hh---h-ccccCChHHHHHHHHHHhcchhhCHHHHHHHHHHHHhhccchhHHHHHHHhcCC---C-CC
Confidence 3677776433 22 2 4443 7789999999999999999999999999999999999999998887741 2 12
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CcccccccCCCCCCccc--hhhHHHHHHHHHHHhccccccccC
Q 000718 120 VLDRLSSHRNAFKIYTFFLISIVLAQEFNISSNNNP-KVTASTRKKQPVNSWNW--DPQRGRILNLIANSLEINLPLLFG 196 (1334)
Q Consensus 120 ~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~~~~~~-~~~~k~kK~~~~~~~~W--~~qr~~~L~~l~~~L~l~l~~Lw~ 196 (1334)
.+++ + |+-|+|+++.++............. -...|++|+.+....+| .+|.+..|..|..+++..+++.|.
T Consensus 99 ipQ~-n-----le~~g~~fqll~s~l~~~l~v~~s~sTn~~k~~kkndsan~~~~~~n~me~LL~~Iv~l~~~~ls~~~~ 172 (1128)
T COG5098 99 IPQC-N-----LENKGRIFQLLKSKLNSPLEVAPSLSTNVSKLEKKNDSANVEKRDCNQMEDLLPKIVDLIRGCLSNSRE 172 (1128)
T ss_pred Cccc-c-----ccchhhHHHHHHHhccChhhhhhhhhchhhhcCcCCCccccccccchHHHHHHHHHHHHHHHHhhcccc
Confidence 2333 3 6689999999888876543321111 11236667754444444 599999999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHH
Q 000718 197 SSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKK 276 (1334)
Q Consensus 197 ~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~ 276 (1334)
|+++.+-|+.||++|.|.+||.+...|+.+.+..+|+|+|.+++.|||...+...++++|+||+|++.++||++..+..+
T Consensus 173 Ts~e~d~fl~Lfl~p~~~llE~e~~~kv~s~~~~~~rI~g~~v~~hnh~~~~~~~~~snl~yf~hls~~~aeli~~isde 252 (1128)
T COG5098 173 TSEEMDKFLFLFLEPTKVLLERERDSKVRSRLLECIRIYGKDVRLHNHVIDLMCTKNSNLTYFAHLSGLIAELIPSISDE 252 (1128)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 000718 277 YADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKA 356 (1334)
Q Consensus 277 ~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~ 356 (1334)
|++.++.++|+++++..+|++ .|.+|||.+|.||.+||+++|.+|++|+.++..+||+|||+||||++|+|||+|...
T Consensus 253 ~n~~~l~edi~~~l~~l~fn~--~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~ 330 (1128)
T COG5098 253 LNRCALKEDIPVLLKNLSFNL--PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF 330 (1128)
T ss_pred hhhhhhhcccHHHHhhceeec--ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHH
Q 000718 357 FKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSA 436 (1334)
Q Consensus 357 l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~A 436 (1334)
.++++.-++.+++ .+.+.++|.||+.|.+||||+||||++.+||+.+.+-.+++++++++++|||+|||+.|||||
T Consensus 331 ~~d~qm~e~~~~~----~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrna 406 (1128)
T COG5098 331 KKDGQMVEHYKQK----LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNA 406 (1128)
T ss_pred hcchhhHhhHHHH----HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888777888877 899999999999999999999999999999998877768889999999999999999999999
Q ss_pred HHHHHHHHhhCCC----CCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhh
Q 000718 437 LNLLVMMLQHNPF----GPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQE 512 (1334)
Q Consensus 437 iqLL~~lL~~nPf----~~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~e 512 (1334)
|+|+++||.+||| |++|++..|++-|...+.+|+.+.+... + .+.+++.|.|+.+.+..+.-+
T Consensus 407 ikl~SkLL~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~q-e----------~l~D~E~Eveqd~~q~~t~le-- 473 (1128)
T COG5098 407 IKLCSKLLMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQ-E----------TLCDGEKEVEQDEGQCRTELE-- 473 (1128)
T ss_pred HHHHHHHHhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhh-c----------cccchHHhhhhhhhhhhhhhc--
Confidence 9999999999999 6899999999999999999987764221 1 111222111111110000000
Q ss_pred hcccCCCCCcccccccC---CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHh
Q 000718 513 SLTDSCLPLADEGIADK---DSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCK 589 (1334)
Q Consensus 513 a~~~~~~~~~~~~~~~~---~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~ 589 (1334)
+.|..++|.-.+. ..++.....++|+++++.||+||+.|++.|++..+.+.+||++||++||.|+|+|||.|+
T Consensus 474 ----~~~n~~~es~ien~ve~ina~~t~~lmKl~l~~~yY~da~qfidi~~~~~~~Is~LLf~knk~EV~EsmdF~vlc~ 549 (1128)
T COG5098 474 ----GSFNKSAESRIENEVENINATNTSVLMKLKLMIVYYEDANQFIDIMKEIQDNISTLLFGKNKTEVNESMDFIVLCF 549 (1128)
T ss_pred ----cccccchhhhhhhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 0011111100000 012455778999999999999999999999999999999999999999999999999999
Q ss_pred hccCcchHHHHhhhcchhcccCc-----cHHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHhhcCcchhhHHHHH
Q 000718 590 QFQIDGAEACLHKMLPLVLSQDK-----SIYEAVENAFITIYVRKS--------PVETAKNLLNLAIDSNIGDQAAMEFI 656 (1334)
Q Consensus 590 ~f~I~~a~~girkML~LVWskd~-----~V~~~vi~ay~~Ly~~~~--------~~~ia~nLi~L~~~at~~dl~sLEeL 656 (1334)
.|||+++..||+||+||||.|+. +|..||++||+.||+.+| +.++|+|||.++++++++||+|||++
T Consensus 550 ~f~I~~S~~~ikkm~hLvW~kgt~deg~si~~hvlscyk~lf~~~p~ns~~~e~a~~iarnlinls~~aslaeLssleql 629 (1128)
T COG5098 550 YFRIDGSREAIKKMFHLVWTKGTDDEGTSIELHVLSCYKLLFQMKPNNSSLFEFAKEIARNLINLSFEASLAELSSLEQL 629 (1128)
T ss_pred HhcccchHHHHHHHHHhheecccCCCCcchhHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcccHHHHHHHHHhHHHH
Confidence 99999999999999999999964 599999999999999988 79999999999999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHH
Q 000718 657 VGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACI 736 (1334)
Q Consensus 657 l~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~a~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~ 736 (1334)
+++||+.+.|+..||+.||++|+.++.++|..|++|+|+++||++.++..++..++++++.||+|..|-.|+.|+||+|+
T Consensus 630 l~mm~~~~yid~~vIs~Lw~~ys~Qk~d~s~~q~~gsii~iGml~l~d~~~~l~gl~~ll~iglg~~gl~dl~L~rY~ci 709 (1128)
T COG5098 630 LGMMYARRYIDKTVISELWSMYSLQKFDFSLLQASGSIIHIGMLLLVDMFHSLVGLSTLLLIGLGVEGLLDLMLSRYKCI 709 (1128)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhhccchhHHhhccceEEecchhhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 99999999999999999999998788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccccc--cccccccHHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCC
Q 000718 737 AIQRLSQEDKKK--LLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGG 814 (1334)
Q Consensus 737 aL~~l~~~~k~~--~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~ 814 (1334)
|+.|++...+-. +..+..|-+.++|...+..+ +-+.+||+++|||+.+||.++..||.+|++||...+...||.+.+
T Consensus 710 a~~Rv~~~~~~~~~In~~l~~~l~kkl~~~vv~~-t~s~ey~~~~eqa~sai~~~~k~pD~l~t~li~~~t~~~fgkp~e 788 (1128)
T COG5098 710 AQIRVRQRVKFDDEINEVLAKNLAKKLEHQVVDV-TVSTEYSISTEQAKSAIMLLEKLPDMLRTSLIAISTVGCFGKPHE 788 (1128)
T ss_pred HHHHHHHhccccHhhhHHHHHHHHHHHHHHhhcc-cccceeccchHHHHHHHHHHHhCchHHHHHHHHHHHHHhcCCCcc
Confidence 999998655432 45566777888887777764 567899999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccc
Q 000718 815 EEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTS 894 (1334)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~ 894 (1334)
+++-.--+ + .-....|+|++|+|||||||++||+|.|+.++|||++..+...+.+. ..+. -++++.+.
T Consensus 789 eds~~~le-~------~er~v~l~~l~f~Vg~vaIk~lVy~e~ceaefkrrki~ae~~~~v~n-~~~~---~nns~qd~- 856 (1128)
T COG5098 789 EDSMQYLE-E------LERLVKLNRLKFKVGKVAIKPLVYEERCEAEFKRRKISAELEENVDN-DDSI---LNNSAQDR- 856 (1128)
T ss_pred hhHHHHHH-H------HHHHHhhhceeeEecceeehHHHHHHHHhhHHhhhhhHHHHHhhccC-CCCc---Cccchhhc-
Confidence 43210000 0 12357899999999999999999999999999999996655322211 1111 01122222
Q ss_pred hhhhhccc--cchhhhhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH
Q 000718 895 INAELGLA--ASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY 972 (1334)
Q Consensus 895 ~~~Elgl~--t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~ 972 (1334)
.|++++ ++||++.|+++.|+|+|+|||+ +++|++|+|+|+++|+|.+++ +||.||.+|.+||.||||+|.+|
T Consensus 857 --ge~~~IggtsEddf~da~~fikE~ElLyGe---ksvLs~F~pvVeE~csn~~~~-sd~~lq~aA~l~L~klMClS~~f 930 (1128)
T COG5098 857 --GESSRIGGTSEDDFVDAFFFIKEKELLYGE---KSVLSNFKPVVEEGCSNSSRF-SDEELQVAAYLSLYKLMCLSFEF 930 (1128)
T ss_pred --chhhhccCCCHHHHHHHHHHHHHHHHhhch---hHHHhhhhHHHHHHhcccccc-CCHHHHHHHHHHHHHHHHHhHHH
Confidence 267777 9999999999999999999998 999999999999999999999 99999999999999999999999
Q ss_pred HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH
Q 000718 973 CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI 1052 (1334)
Q Consensus 973 c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l 1052 (1334)
|++|+|+|+|+||++|+|.||+|+||+||||++||++++|++|.++|++|.|++.+|||||+|++++||+.|++|||||+
T Consensus 931 c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVKGql 1010 (1128)
T COG5098 931 CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVKGQL 1010 (1128)
T ss_pred HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeeccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC-CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000718 1053 NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ-NLKTESFCNIMQLLIGFIKKDKQMEALVEKLC 1131 (1334)
Q Consensus 1053 ~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~-~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc 1131 (1334)
+.||+||.|||.+|++||+.||+++|+|+ |++||+|+||+|.||.. ....+.|+.|++||.+||+|+||+.+|.|+|.
T Consensus 1011 g~ma~~L~deda~Isdmar~fft~~a~Kd-Nt~yn~fidifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L~ 1089 (1128)
T COG5098 1011 GKMALLLTDEDAEISDMARHFFTQIAKKD-NTMYNGFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESLF 1089 (1128)
T ss_pred hhhHhhccCCcchHHHHHHHHHHHHHhcc-cchhhhhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999844 55667799999999999999999999999999
Q ss_pred hhhhcccchHhHHHHHHHHhccCCChhHHHHHHH
Q 000718 1132 NRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIE 1165 (1334)
Q Consensus 1132 ~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e 1165 (1334)
.|+..|++++||.+++|.|+.|||+-.++.+|++
T Consensus 1090 ~rl~rc~tq~qwd~~~~~l~nLp~k~~~~~~Ll~ 1123 (1128)
T COG5098 1090 LRLLRCNTQSQWDKLLCSLFNLPDKIAGSGGLLN 1123 (1128)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCccccchhhHhh
Confidence 9999999999999999999999999999999986
No 3
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=100.00 E-value=2.8e-42 Score=367.42 Aligned_cols=165 Identities=50% Similarity=0.758 Sum_probs=160.7
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChhHH
Q 000718 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQRIS 1067 (1334)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~I~ 1067 (1334)
+|.||+|+++++||||+||||++|||++.+|.+|+|+++.||++|+++|||||++|||||||++ ++|+.||.|+|++|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~Ir 80 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEIR 80 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHhcc-CCchhhhhhhHHHhhccCC-------CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhccc-
Q 000718 1068 NLAKLFFHELSKK-GNNPIYNLLPDILGKLCNQ-------NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVT- 1138 (1334)
Q Consensus 1068 ~~a~~ff~eL~~K-~~n~iyn~~pdiis~Ls~~-------~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~- 1138 (1334)
++|+.||.|+++| +||+|||+|||+|++|++. ..+.++|+.||+||++||+||||.++|++|||+||..+.
T Consensus 81 ~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~~ 160 (178)
T PF12717_consen 81 SLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAVV 160 (178)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999 8899999999999999864 478999999999999999999999999999999999999
Q ss_pred --chHhHHHHHHHHhcc
Q 000718 1139 --DIRQWEYISYCLSQL 1153 (1334)
Q Consensus 1139 --~~rqwrdiafcLslL 1153 (1334)
++++|+|++|||+.+
T Consensus 161 ~~~~~~~~d~~~~l~~~ 177 (178)
T PF12717_consen 161 DEDERVLRDILYCLSCL 177 (178)
T ss_pred cccHHHHHHHHHHHHCc
Confidence 999999999999986
No 4
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=100.00 E-value=2.4e-33 Score=335.30 Aligned_cols=698 Identities=15% Similarity=0.145 Sum_probs=429.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQL 453 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L 453 (1334)
.-.+.+++..|+.|.-|-||.+||..++++.+...=- .-..++...+-...|.--.||+++..++.. .+-||+.+-
T Consensus 470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~--~~~sIl~~~inS~~d~~fs~ves~~~~~~~--~~~~~s~~~ 545 (1529)
T KOG0413|consen 470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR--EAFSILCATINSEMDEKFSAVESLEDLNVS--GKAPSSKTK 545 (1529)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc--chHHHHHHhcCCccccchhHHHhchhhhhc--ccCcccccc
Confidence 4567889999999999999999999999999853211 123788888999999888899888777543 345776665
Q ss_pred ChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhh------hhhc-ccCCCCCccccc
Q 000718 454 RIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQ------QESL-TDSCLPLADEGI 526 (1334)
Q Consensus 454 ~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~------~ea~-~~~~~~~~~~~~ 526 (1334)
...+|-..-.+... +.. -+-.+++|+..++ -.+. .+
T Consensus 546 ~tt~~l~~~~~ii~-------------------------d~~--~~~~~~ge~~~e~~V~~mi~Rr~~~d---------- 588 (1529)
T KOG0413|consen 546 KTTDLLLDEQQIIQ-------------------------DFK--LKLMNKGETRVEKDVVYMIVRRLSTD---------- 588 (1529)
T ss_pred cchhhcCcchhhhh-------------------------hcc--hhhhhccccHHHHHHHHHHHHHhccC----------
Confidence 55544221111100 000 0011111111111 0000 01
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhh-----ccCcchHHHHh
Q 000718 527 ADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQ-----FQIDGAEACLH 601 (1334)
Q Consensus 527 ~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~-----f~I~~a~~gir 601 (1334)
..+.-.....++++-|+.+.= -.-..+..+-.+..|..+.-.+-+.-+.+=|+.... |.|. ..-++
T Consensus 589 ------~k~~v~k~a~~~l~S~l~~cD-~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~--~~wl~ 659 (1529)
T KOG0413|consen 589 ------DKAPVKKAACSLLKSYLSYCD-EASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLS--SKWLH 659 (1529)
T ss_pred ------CCcccchhhHHHHHHHHhccc-hhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhh--HHHHH
Confidence 011122234455555554421 112223336666667777777777777766665433 3332 23345
Q ss_pred hhcchhcccCccHHHHHHHHHHHhhcCCC--hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 000718 602 KMLPLVLSQDKSIYEAVENAFITIYVRKS--PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFC 679 (1334)
Q Consensus 602 kML~LVWskd~~V~~~vi~ay~~Ly~~~~--~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~ 679 (1334)
-..++|-..+..|.++...-.-++...-. ...+||-|+..+...+. ...+|+.++..|+++..+++.+++..-++-
T Consensus 660 ~li~~~~d~es~v~e~a~~~i~k~l~p~~~~~~dlaW~LL~~i~~~~~-~s~yl~~~~h~w~~~~k~~~t~~d~~~~hs- 737 (1529)
T KOG0413|consen 660 TLISMLNDTESDVTEHARKLIMKVLTPLLENSSDLAWTLLDTIESVTN-HSQYLMSTLHDWVREKKVKRTVMDSMKQHS- 737 (1529)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhhcccCCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchhhhhhhhccc-
Confidence 55666777788899988876666543311 35599999999888777 889999999999999999999998876662
Q ss_pred ccCCCCCHHhHHHHHHHHHHHhccChhhhhh-hHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccccccccccccccHHH
Q 000718 680 FNVSGTTPEKSRAALSVLCMAAKSSAAVLGS-HLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVF 758 (1334)
Q Consensus 680 ~~~~~~s~~~~r~Al~lL~Mla~a~~~iv~~-~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if 758 (1334)
.-+..-+||++++-++..-+.+-.+ .+....++ + ..|- +..|.-.++..++..+++ .-....
T Consensus 738 ------G~E~~~~aWm~~s~~~~q~~~~d~S~~~~s~~~~--s---~~~N-~~~~L~hI~~~i~~i~~~-----l~s~~v 800 (1529)
T KOG0413|consen 738 ------GSEKLDGAWMVFSQLCVQFEQVDFSIETFSRVDL--S---RESN-LVQYLIHIIENIKKIDDD-----LKSDLV 800 (1529)
T ss_pred ------CcccCcchHHHHHHHHhcccccceeeeccccccc--c---hhhh-HHHHHHHHHHHHHhhhhc-----ccHHHH
Confidence 2355679999999998877763222 11122221 1 1222 555666666655544332 112345
Q ss_pred HHHHHHHccCCC-CCCch-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCC--CC--CCCCCCCCCCCCCc
Q 000718 759 ATLESLITGFWL-PDNIW-YTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEE--PH--NGIDCVGTSMPTSV 832 (1334)
Q Consensus 759 ~~L~~~l~~~~~-~~~~W-~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~--~~--~~~~~~~~~~~~~~ 832 (1334)
..+...+..++. +...| +.+--.+.+.|-.+|-+--.+-..-|..++.+.|.-..... .. ..-.+.+ ...
T Consensus 801 d~~~~a~K~~Ck~~~~~~s~e~~~~~~d~i~~~sl~~~e~~~~~iE~l~~~c~d~i~~~~~~~~~~~~~~~~s----~~~ 876 (1529)
T KOG0413|consen 801 DTLQGAFKDYCKHPSSRSSYECLGKLMDGIGDRSLHGKEFSDFGIETLLIKCFDTIVQSFEMFKDKDEWKRNS----ESQ 876 (1529)
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHhhcccCchHHHhhHHHhccceehhHHhhhhhhHHHhhcc----hhH
Confidence 555555542221 22233 44555666666666533222222222222222221110000 00 0000000 011
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc------cchh
Q 000718 833 QVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA------ASED 906 (1334)
Q Consensus 833 ~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~------t~eD 906 (1334)
....++.+.|..|.+++- +.. .+. ..-+-+. .+-|
T Consensus 877 ~~~l~~~y~v~~~~~~ql-------~P~----ar~----------------------------~K~~~lLv~s~~~gssD 917 (1529)
T KOG0413|consen 877 ERLLCTAYNVAFSYSPQL-------VPH----ARL----------------------------GKTLSLLVNSTENGSSD 917 (1529)
T ss_pred HHHHHHHhhcccccccee-------ccc----hhc----------------------------cceeeeeeeeeccCCCC
Confidence 122222333333332211 110 000 0000011 0111
Q ss_pred hhhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhc
Q 000718 907 AKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVES 986 (1334)
Q Consensus 907 ~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~ 986 (1334)
+ + -.+ ++|.+=+-.=.| =.++|.. . ..+.+|+++++||+|+|+.+.+..++.+|+|.+.||.
T Consensus 918 a--~----------htp-~tq~se~p~sqp-~~~v~g~--~--~~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~ 979 (1529)
T KOG0413|consen 918 A--P----------HTP-PTQLSEVPSSQP-SSKVEGA--M--FSDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEY 979 (1529)
T ss_pred C--C----------CCC-ccchhhCcccCC-Ccccccc--c--cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 1 1 111 111110000000 0012221 1 3678999999999999999999999999999999999
Q ss_pred CCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChh
Q 000718 987 SPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQR 1065 (1334)
Q Consensus 987 s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~ 1065 (1334)
+....||+|+||++||+|++|+..+|.|+|.|.+||+||++.|||+|+..||.|++.|+|||+|.| .+|...|+|+++.
T Consensus 980 ~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~ed 1059 (1529)
T KOG0413|consen 980 NTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANED 1059 (1529)
T ss_pred hhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHHhc-cCCchhhhhhhHHHhhccCC-------------------------CCChhHHHHHHHHHHhhhhh
Q 000718 1066 ISNLAKLFFHELSK-KGNNPIYNLLPDILGKLCNQ-------------------------NLKTESFCNIMQLLIGFIKK 1119 (1334)
Q Consensus 1066 I~~~a~~ff~eL~~-K~~n~iyn~~pdiis~Ls~~-------------------------~~~~~~f~~i~kfLl~~i~K 1119 (1334)
|+++|+++|.++.+ +.||.+||+|+++|.+|++. +....+...||+||+..++
T Consensus 1060 Ir~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~~n~~qs~r~~~~fSi~G~d~~aR~~Rm~IY~fLL~~~~- 1138 (1529)
T KOG0413|consen 1060 IRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGVGNHDQSDRGQVDFSIGGGDPLARPSRMAIYTFLLDSLD- 1138 (1529)
T ss_pred HHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCCCCCcccchhceeEeecCCCcccchhhhhHHHHHHHhcC-
Confidence 99999999998555 68999999999999999852 1234457889999999995
Q ss_pred hhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccCCChhHHHHHH-HhHHHHHHhhCchHHHHHHHHHHHHhhhcCChhh
Q 000718 1120 DKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLI-ESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEV 1198 (1334)
Q Consensus 1120 dkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~-e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~k~e~ 1198 (1334)
|+|.....-|||+|+..+ |+-+.||+++=...-|+ |.|.. -+=+.|=-++.+++.|+.
T Consensus 1139 de~rf~v~~kiC~~Ila~----------~~dG~l~~~D~~~q~lL~Daf~I-----------LaskEi~l~~~rgk~p~~ 1197 (1529)
T KOG0413|consen 1139 DESRFDVKMKICQRILAP----------IVDGELDFSDYNVQCLLDDAFLI-----------LASKEIQLKMDRGKNPNE 1197 (1529)
T ss_pred hHHHHHHHHHHHHHHHHH----------HhcCcCChhhccHHHHHHHHHHH-----------HhhhhhhhhhhcCCCCcc
Confidence 679999999999999988 78888998665544433 22221 122344445555666764
Q ss_pred hHHHHHHHHHHHHHhhhchhhHHHHHHHHHhhhhhc
Q 000718 1199 KVCIEEFEEKLNKYHTEKKDQEATTRNAQIHQQKVN 1234 (1334)
Q Consensus 1199 K~~i~EfE~kl~~~~~~g~e~~~~~~~~~~~~~~~~ 1234 (1334)
++....+.+-.+|+.++-.|..+.+
T Consensus 1198 -----------~~~dd~~~~~~eA~~~~i~~v~~~~ 1222 (1529)
T KOG0413|consen 1198 -----------NAMDDPSPEVLEAATGFIQKVYLDH 1222 (1529)
T ss_pred -----------ccccccChHHHHHHHHHHHHHHHHh
Confidence 2223355555566666666655544
No 5
>PF12922 Cnd1_N: non-SMC mitotic condensation complex subunit 1, N-term; InterPro: IPR024324 Condensin is a multi-subunit protein complex that acts as an essential regulator of chromosome condensation []. It contains both SMC (structural maintenance of chromosomes) and non-SMC subunits. Condensin plays an important role during mitosis in the compaction and resolution of chromosomes to remove and prevent catenations that would otherwise inhibit segregation. This is thought to be acheived by the introducion of positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases. During interphase condensin promotes clustering of dispersed loci into subnuclear domains and inhibits associations between homologues. In meiosis, condensin has been shown to influence the number of crossover events by regulating programmed double-strand breaks. Roles in gene regulation and lymphocyte development have also been defined. Condensin subunit 1 (known as Cnd1 in Schizosaccharomyces pombe (Fission yeast), and XCAP-D2 in Xenopus laevis laevis) represents one of the non-SMC subunits in the complex. This subunit is phosphorylated at several sites by Cdc2. This phosphorylation process increases the supercoiling activity of condensin [, ]. This entry represents the conserved N-terminal domain of Cnd1.
Probab=100.00 E-value=1.9e-33 Score=297.82 Aligned_cols=162 Identities=33% Similarity=0.519 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhccc----cCCCC-
Q 000718 81 LSPSCKLSLVESLRSNLSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIVLAQEFNIS----SNNNP- 155 (1334)
Q Consensus 81 l~~~~~~~l~~~l~s~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~~~~e~~~~----~~~~~- 155 (1334)
||++++.+++|+|+|+++.++.++...++.+ + + .+.+.+|||+||||+|||+|++..+|++.. +....
T Consensus 1 L~~~~~~~l~dll~s~l~~l~~~~~~~l~~~----~--~-~~~~~~~r~aLkmy~yLl~~l~~~~e~~~~~~~~~~~~~~ 73 (171)
T PF12922_consen 1 LSPSLKNQLLDLLCSSLSNLSDSIQSLLESS----D--D-EDSRASHRNALKMYGYLLHWLLEALEKEASAKSSKSASKK 73 (171)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----c--c-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 6899999999999999999999999999875 1 2 455599999999999999999999996421 11111
Q ss_pred --CcccccccC--CCCCCccchhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHH
Q 000718 156 --KVTASTRKK--QPVNSWNWDPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDAL 231 (1334)
Q Consensus 156 --~~~~k~kK~--~~~~~~~W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~i 231 (1334)
.++++++|+ ...+.|+|++||+++|++|.++|++||++||+|+++||+||+||+||||++||||+++|++++|+++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~w~~q~e~~L~~l~~~L~l~L~rlw~~~~~~e~Fi~l~~r~~y~llE~~~~~K~~~ik~~i 153 (171)
T PF12922_consen 74 SGKGKKKKKKKKKKKEESWDWESQRERILEALIKVLQLDLSRLWRTTPEEEEFISLFTRPCYKLLENPEIVKNKSIKDAI 153 (171)
T ss_pred cccCCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHcCcHHHHcCCCCchHHHHHHHHHHHHHHHcChHhhccHHHHHHH
Confidence 111122222 5677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccchhhhH
Q 000718 232 CRIIGACATKYHYIEQSC 249 (1334)
Q Consensus 232 f~il~~~vk~y~h~~~~~ 249 (1334)
|+|||++||+|||+.++|
T Consensus 154 f~il~~~vk~h~h~~~~q 171 (171)
T PF12922_consen 154 FRILGTAVKKHNHALSAQ 171 (171)
T ss_pred HHHHHHHHHHcccccccC
Confidence 999999999999999875
No 6
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=1.8e-09 Score=136.54 Aligned_cols=246 Identities=20% Similarity=0.263 Sum_probs=184.8
Q ss_pred hhhhhhHHHHHhhhccCC-CC---CCchhhhhhHHHHHHhcCC--cCC-----CCChHHHHHHHHHHHHHhhcCHHHHHH
Q 000718 907 AKLDTLSEKAEKEIISGG-SS---QKNLIGHCASFLSKFCRNF--SLM-----NKYPELQASAMLALCRFMIIDADYCDA 975 (1334)
Q Consensus 907 ~~~d~i~~i~E~eLl~g~-~~---~~sLL~~f~PlV~~iC~~~--~~~-----~~~~~l~~~A~l~L~K~m~vs~~~c~~ 975 (1334)
.++-.+-++|-+..+++. .. +.=-|++|.++=.++|... ..+ .++|.+|.-++++||-|..-=+.+-+.
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~ 998 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEP 998 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccch
Confidence 355667777877666652 00 0124788888888999763 211 268999999999999999888899999
Q ss_pred hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHH---------------------
Q 000718 976 NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAV--------------------- 1034 (1334)
Q Consensus 976 ~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l--------------------- 1034 (1334)
+-+.|++.| ..+++.||-|++.+|.=|.-.====|--+.+.|..||-||++.+|--|=
T Consensus 999 ~T~~Ly~rL-~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil 1077 (1251)
T KOG0414|consen 999 WTEHLYRRL-RDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDIL 1077 (1251)
T ss_pred hhHHHHHHh-cCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHH
Confidence 999999999 8889999999999887665433334677899999999999999987765
Q ss_pred -----------------HHHHHHHHccccccchh-HHHHHHHhcCCChhHHHHHHHHHHHHhccC-CchhhhhhhHHHhh
Q 000718 1035 -----------------LVLSHLILNDMMKVKGY-INEMAIRVEDEDQRISNLAKLFFHELSKKG-NNPIYNLLPDILGK 1095 (1334)
Q Consensus 1035 -----------------~vlthLIl~dmiKvKg~-l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~-~n~iyn~~pdiis~ 1095 (1334)
.-|-.||..| =|..|. +.++..-+..-+++=..=-+.||..+++|. .|.+||.|.|+|++
T Consensus 1078 ~~Ls~~~l~~~~~~~vm~~li~~ikkd-erf~~~~~~rycl~~l~~~e~~~kk~~~~f~~~a~k~~~d~v~~~f~diis~ 1156 (1251)
T KOG0414|consen 1078 SRLSNGNLEEESYKTVMEFLIGLIKKD-ERFSADRIERYCLSLLTTTERGSKKLKDLFTALAKKVQNDSVYNNFIDIISK 1156 (1251)
T ss_pred HhhccCcccchhhHHHHHHHHHHhccc-ccccccccchhhhcccccchhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2222333333 122221 122222222222222223346899999995 38899999999999
Q ss_pred ccCCC-----CChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccC
Q 000718 1096 LCNQN-----LKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLA 1154 (1334)
Q Consensus 1096 Ls~~~-----~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~ 1154 (1334)
++... .--+.|+.+++++..+++++++..+++|++-.|...+.+..+|.++++.++.+|
T Consensus 1157 ~sk~a~pe~ka~~~efe~ki~~~h~~~~~~~~~~Q~~e~~~~~~~~~~~~~r~~~it~~~~r~p 1220 (1251)
T KOG0414|consen 1157 LSKFAKPELKAVIDEFEEKIKECHSFKKDERHKAQLVEELTPRLKKCSTGSRWADITKNLGRLP 1220 (1251)
T ss_pred hccccCchhhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhHHhhccccccccccccccccCCC
Confidence 98642 345899999999999999999999999999999999999999999999999999
No 7
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=3.5e-06 Score=109.41 Aligned_cols=591 Identities=18% Similarity=0.180 Sum_probs=336.5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQL 453 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L 453 (1334)
-|.+|.++.-=..--.+-+|+|||.++..+++...+=+.+ ..|-..+.||+.|-|+.||-+|+-|+++++..+|
T Consensus 814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~-~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~----- 887 (1692)
T KOG1020|consen 814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR-PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP----- 887 (1692)
T ss_pred hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC-HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH-----
Confidence 5778888777666667789999999999999987666655 5888999999999999999999999999999988
Q ss_pred ChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCC
Q 000718 454 RIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSV 533 (1334)
Q Consensus 454 ~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~ 533 (1334)
+...+-++...+.. +
T Consensus 888 --e~~~qyY~~i~erI----------------------l----------------------------------------- 902 (1692)
T KOG1020|consen 888 --ELIFQYYDQIIERI----------------------L----------------------------------------- 902 (1692)
T ss_pred --HHHHHHHHHHHhhc----------------------C-----------------------------------------
Confidence 22222222221100 0
Q ss_pred CCchhhHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhccc
Q 000718 534 PDVGNLEQTRAL---VASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQ 610 (1334)
Q Consensus 534 ~~~~~l~k~~~~---v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWsk 610 (1334)
|.+-..+.|++ ..-|.+.=.|....+-+ -|||.=|=.-
T Consensus 903 -DtgvsVRKRvIKIlrdic~e~pdf~~i~~~c--------------------------------------akmlrRv~DE 943 (1692)
T KOG1020|consen 903 -DTGVSVRKRVIKILRDICEETPDFSKIVDMC--------------------------------------AKMLRRVNDE 943 (1692)
T ss_pred -CCchhHHHHHHHHHHHHHHhCCChhhHHHHH--------------------------------------HHHHHHhccc
Confidence 01111222221 22222222343333322 2455555555
Q ss_pred CccHHHHHHHHHHHhhcCCChH-----HHH---HHHHHHHhhcCcchhhHHHHHHHHHHhCCCC-------C--------
Q 000718 611 DKSIYEAVENAFITIYVRKSPV-----ETA---KNLLNLAIDSNIGDQAAMEFIVGTLVSKGDV-------S-------- 667 (1334)
Q Consensus 611 d~~V~~~vi~ay~~Ly~~~~~~-----~ia---~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I-------~-------- 667 (1334)
+-+|++-|.+.|-.++|+|.+. ..+ -+.+..+...=..-.+.+|+|+..+.+.+.. .
T Consensus 944 Eg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~ 1023 (1692)
T KOG1020|consen 944 EGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVT 1023 (1692)
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcc
Confidence 5668999999999999998821 111 1112222111123345677777776654431 1
Q ss_pred ---HHHHHHHHHHhh-c----cCCCCCHHhHHHHHHHHHHHhccChhhhh-hhHHHHHHhhcCC-CCCCcHHHHHHHHHH
Q 000718 668 ---MSTISALWDFFC-F----NVSGTTPEKSRAALSVLCMAAKSSAAVLG-SHLQDIIDIGFGR-WAKVEPLLARTACIA 737 (1334)
Q Consensus 668 ---~~vi~~LW~~~~-~----~~~~~s~~~~r~Al~lL~Mla~a~~~iv~-~~ld~l~~iglg~-~~~~D~~lar~~c~a 737 (1334)
.-+..-|.+... . ...+.+..+--+-+..|-..|+..|.... +++-+|.-+.-.. ....+..+..|...+
T Consensus 1024 ~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~I 1103 (1692)
T KOG1020|consen 1024 HVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQI 1103 (1692)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHH
Confidence 111111111111 0 12233445555778889999999999888 8888886664443 233444555555555
Q ss_pred HHhcccccccccccccccHHHHHHHHHHccCCCCCCchHHHHH--HHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCC
Q 000718 738 IQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAAD--KAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGE 815 (1334)
Q Consensus 738 L~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~ae--qaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~ 815 (1334)
|.+.-|--++ | ...+...|...|.... ...+.-.+.+ ..+.++|.---+--.+...+...+.+.. ....
T Consensus 1104 le~VlPlv~~----~-sesfL~sLEe~L~~~i-~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~l-e~~k-- 1174 (1692)
T KOG1020|consen 1104 LECVLPLVAN----P-SESFLASLEEDLLKRI-VKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLL-EVIK-- 1174 (1692)
T ss_pred HHHHhhhhcc----c-hHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH-HHHH--
Confidence 5554443221 1 1223344444332000 0001112222 4445555432233333333333333222 1000
Q ss_pred CCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccch
Q 000718 816 EPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSI 895 (1334)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~ 895 (1334)
.+.++. . ..+.--.|.|.+|++|--+-- ..-. ..++
T Consensus 1175 ~s~~en-~------~~~~~p~l~RsiftlG~l~Ry----------------fdf~--------~~~~------------- 1210 (1692)
T KOG1020|consen 1175 SSNNEN-A------DIVNFPKLQRSIFTLGLLSRY----------------FDFP--------KPSN------------- 1210 (1692)
T ss_pred hccccc-c------chhhhHHHHHHHHHHHHHHHh----------------ccCC--------CccC-------------
Confidence 000000 0 122334799999999975321 1000 0000
Q ss_pred hhhhccccchhhhhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHH--
Q 000718 896 NAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYC-- 973 (1334)
Q Consensus 896 ~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c-- 973 (1334)
-+.++ .+..-.++|.=+. +|..| |+. .+..||..|+.+||++|...++|-
T Consensus 1211 -----~g~~~---~~~~~~~~e~v~~--------lL~~f-------~k~-----~~~~lR~~al~~Lg~~ci~hp~l~~~ 1262 (1692)
T KOG1020|consen 1211 -----DGKTF---LQEGETLKEKVLI--------LLMYF-------SKD-----KDGELRRKALINLGFICIQHPSLFTS 1262 (1692)
T ss_pred -----CCccc---hhhhhhHHHHHHH--------HHHHH-------HHh-----hhhHHHHHHHHHHHHHHhhCchhhhh
Confidence 00011 1223345553221 44555 444 567999999999999999887652
Q ss_pred ------------------------HHhHHHHHHHH----hcCCChhhHhhHHHHhhhh----hhccCc-----ccccchH
Q 000718 974 ------------------------DANLQLLFTVV----ESSPSEIVRSNCTIALGDL----AVRFPN-----LLEPWTE 1016 (1334)
Q Consensus 974 ------------------------~~~l~ll~~~l----e~s~~~~vR~N~vi~lgDL----~~rfpn-----lve~~t~ 1016 (1334)
.+|+.++...= ......-..+|=.+=++-| ..-+.+ ++..|.+
T Consensus 1263 ~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~ 1342 (1692)
T KOG1020|consen 1263 REVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLD 1342 (1692)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHH
Confidence 22232222211 1111222233322222211 122334 8999999
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh---hHHH
Q 000718 1017 NMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL---PDIL 1093 (1334)
Q Consensus 1017 ~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~---pdii 1093 (1334)
.+-.+--|.|..||..|+.|+-=-+-.|+|-+.-.+..+--+-.||-+.||..|-....|+.+|.+.-|.-.+ .++.
T Consensus 1343 ~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~kY~gfv~sk~~~G~~ls 1422 (1692)
T KOG1020|consen 1343 NILESCLDRDLQVRLVAIKVLKLILNQGLVHPVHCVPTLIALETDPSQAIRHVADELLKEIDEKYEGFVFSKLSQGVQLS 1422 (1692)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHccCCCccchhhhheeecCChHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHH
Confidence 9999999999999999999999999999999999998777788999999999999999999999743332222 2233
Q ss_pred hhccC--------C----CCChhHHHHHHHHHHhhhhhhhh-HHHHHHHHHhhhhcc--cchHhHHHHHHHHhccCC
Q 000718 1094 GKLCN--------Q----NLKTESFCNIMQLLIGFIKKDKQ-MEALVEKLCNRFSGV--TDIRQWEYISYCLSQLAF 1155 (1334)
Q Consensus 1094 s~Ls~--------~----~~~~~~f~~i~kfLl~~i~Kdkq-~e~LveKLc~Rf~~~--~~~rqwrdiafcLslL~~ 1155 (1334)
++|.. + ..+...=-++..++.+++.-.|| ..++..-+..-|... ....+.-+||-||+.+||
T Consensus 1423 f~lq~~~~~~~~~~~~~fr~~d~ss~tl~s~ly~~~r~nk~~rr~fl~si~~lfd~~~ks~vs~~~yiadnLA~fPy 1499 (1692)
T KOG1020|consen 1423 FKLQQHIDEKTYKPVRGFRLPDHSSSTLKSNLYKSIRGNKQIRRSFLQSILDLFDDPNKSVVSFLLYIADNLANFPY 1499 (1692)
T ss_pred HHHHHHHHHHhhcccccccCcccchhHHHhccHHHHhhhHHHHHHHHHHHHHhccCCCcchhhhHHHHHhhhccCCc
Confidence 33321 1 11222333566788888865555 566666666667663 345688899999999999
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.82 E-value=4.6e-06 Score=103.11 Aligned_cols=153 Identities=18% Similarity=0.132 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHH
Q 000718 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRN 343 (1334)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRn 343 (1334)
..+..++......|+...+..++++-++. +|-..-|=.-.|+..++...|.+++=.++.|.+-|.+++..+|+
T Consensus 25 ~~l~kli~~~~~G~~~~~~~~~vi~l~~s-------~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~ 97 (526)
T PF01602_consen 25 EALKKLIYLMMLGYDISFLFMEVIKLISS-------KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRG 97 (526)
T ss_dssp HHHHHHHHHHHTT---GSTHHHHHCTCSS-------SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHhCC-------CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHH
Confidence 45666666666777777777777765542 35555566778899999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHH
Q 000718 344 ALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVA 421 (1334)
Q Consensus 344 avve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~a 421 (1334)
..+.+++++... +. .+.++..+..-+.|.++|||.+|+-++.+++.. ..+|.. +....
T Consensus 98 lAL~~l~~i~~~------------~~----~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~----~~~~l 157 (526)
T PF01602_consen 98 LALRTLSNIRTP------------EM----AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE----LIPKL 157 (526)
T ss_dssp HHHHHHHHH-SH------------HH----HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG----HHHHH
T ss_pred HHHhhhhhhccc------------ch----hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH----HHHHH
Confidence 999999998511 22 567888888888899999999999999999985 333322 56777
Q ss_pred HhhccCCchhHHHHHHHHHHHH
Q 000718 422 AGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 422 v~RL~DKSs~VRK~AiqLL~~l 443 (1334)
...|.|+...|+.+|+.++..+
T Consensus 158 ~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 158 KQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHTTHSSHHHHHHHHHHHHHH
T ss_pred hhhccCCcchhHHHHHHHHHHH
Confidence 7788999999999999999888
No 9
>PTZ00429 beta-adaptin; Provisional
Probab=98.62 E-value=0.00052 Score=88.34 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=117.9
Q ss_pred HHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHH
Q 000718 272 GAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGK 351 (1334)
Q Consensus 272 ~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ 351 (1334)
.+...+|...+..+|++-++. .|-.--|=+-.|+..+++..|.+++=.++.|.+-+.+++-.+|..-+-+|+.
T Consensus 59 ~mt~G~DvS~LF~dVvk~~~S-------~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~ 131 (746)
T PTZ00429 59 NMTMGRDVSYLFVDVVKLAPS-------TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMC 131 (746)
T ss_pred HHHCCCCchHHHHHHHHHhCC-------CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHc
Confidence 444456777788888884431 3555667788999999999999999889999999999999999999999999
Q ss_pred HHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhhccCCc
Q 000718 352 LVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVAAGRLEDKS 429 (1334)
Q Consensus 352 ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~av~RL~DKS 429 (1334)
|-.. .. .+.++..|..-+.|.+||||++|.-++.+|... ..++...| ......-|.|++
T Consensus 132 Ir~~------------~i----~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~---~~~L~~LL~D~d 192 (746)
T PTZ00429 132 IRVS------------SV----LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDF---KKDLVELLNDNN 192 (746)
T ss_pred CCcH------------HH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccch---HHHHHHHhcCCC
Confidence 7421 12 456777777788899999999999999999874 33443222 233334489999
Q ss_pred hhHHHHHHHHHHHHHhhCC
Q 000718 430 AIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 430 s~VRK~AiqLL~~lL~~nP 448 (1334)
+.|.-||+.+|..+-..+|
T Consensus 193 p~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 193 PVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred ccHHHHHHHHHHHHHHhCc
Confidence 9999999999999988776
No 10
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=98.52 E-value=5.4e-06 Score=96.14 Aligned_cols=219 Identities=16% Similarity=0.211 Sum_probs=175.4
Q ss_pred hhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC-cc
Q 000718 932 GHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP-NL 1010 (1334)
Q Consensus 932 ~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfp-nl 1010 (1334)
+.+.-+|.-..++ .++.+|..|+.|||-+|+++.++|.+++++|++.+++. ++.||.-++=++.|+..-|+ ..
T Consensus 26 ~ll~~lI~P~v~~-----~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQS-----SDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchh
Confidence 4455555555555 67899999999999999999999999999999999554 88999999999999999997 66
Q ss_pred cccchH------------HHhhhcCCCCHHHHHHHHHHHHHHHHcccccc-chhHHHHHHHhcCCC----hhHHHHHHHH
Q 000718 1011 LEPWTE------------NMYARLKDPSMAVRKNAVLVLSHLILNDMMKV-KGYINEMAIRVEDED----QRISNLAKLF 1073 (1334)
Q Consensus 1011 ve~~t~------------~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv-Kg~l~~~a~~l~D~d----~~I~~~a~~f 1073 (1334)
++.+.. -++..|.+.++.||..+..-+..|+++|.+.. ...+..+.....||. +++++.=-.|
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 666665 78899999999999999999999999999999 777788888887765 7899999999
Q ss_pred HHHHhccCC---chhhhhhhHHHhhccCC--C----CChhHHHHHHHHHHhhhhhhhh-------------HHHHHHHHH
Q 000718 1074 FHELSKKGN---NPIYNLLPDILGKLCNQ--N----LKTESFCNIMQLLIGFIKKDKQ-------------MEALVEKLC 1131 (1334)
Q Consensus 1074 f~eL~~K~~---n~iyn~~pdiis~Ls~~--~----~~~~~f~~i~kfLl~~i~Kdkq-------------~e~LveKLc 1131 (1334)
|..++.-++ ..+-..|.+.+..+.+. + ...-+-.++++|++.+.+..+. ...|+.++|
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il 259 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDIL 259 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHH
Confidence 998876543 55888898888888643 1 1122356899999998873221 248899999
Q ss_pred hhhhcccchH--hHHHHHHHHhccCCC
Q 000718 1132 NRFSGVTDIR--QWEYISYCLSQLAFT 1156 (1334)
Q Consensus 1132 ~Rf~~~~~~r--qwrdiafcLslL~~~ 1156 (1334)
.++....+.. .-+-+.=.|+.|.++
T Consensus 260 ~~i~~~~~~~~~~~k~~~~~L~~L~i~ 286 (298)
T PF12719_consen 260 NEILSDPEKEKEERKALCKALSKLEIS 286 (298)
T ss_pred HHHHhccccchHHHHHHHHHHhccccC
Confidence 9997553333 666666777777665
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=98.20 E-value=0.00018 Score=92.42 Aligned_cols=215 Identities=15% Similarity=0.193 Sum_probs=157.8
Q ss_pred hhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcC
Q 000718 908 KLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESS 987 (1334)
Q Consensus 908 ~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s 987 (1334)
-.+++..+.=...+ | .. .+.+.|-|++.+.. +|..++.-..+.|..+--..++.+-=-++.|.+-| ++
T Consensus 49 kk~alKkvIa~mt~-G----~D-vS~LF~dVvk~~~S-----~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl-~d 116 (746)
T PTZ00429 49 KKAAVKRIIANMTM-G----RD-VSYLFVDVVKLAPS-----TDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDT-TN 116 (746)
T ss_pred HHHHHHHHHHHHHC-C----CC-chHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHc-CC
Confidence 35677777765554 4 22 34455666666555 57899999999999998888888777777777777 67
Q ss_pred CChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc--cccccchhHHHHHHHhcCCChh
Q 000718 988 PSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN--DMMKVKGYINEMAIRVEDEDQR 1065 (1334)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~--dmiKvKg~l~~~a~~l~D~d~~ 1065 (1334)
++|.||++++=.||. +|-|+++++-.+.+-++|.|++|.|||+|.+-+.+|... +++...|-+-++..+|.|+|+.
T Consensus 117 ~Np~IRaLALRtLs~--Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~ 194 (746)
T PTZ00429 117 SSPVVRALAVRTMMC--IRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPV 194 (746)
T ss_pred CCHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCCcc
Confidence 899999999999997 566999999999999999999999999999999999754 4555566666777789999999
Q ss_pred HHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhh-hhhHHHHHHHHHhhhhcc
Q 000718 1066 ISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKK-DKQMEALVEKLCNRFSGV 1137 (1334)
Q Consensus 1066 I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~i~kfLl~~i~K-dkq~e~LveKLc~Rf~~~ 1137 (1334)
+..-|-..|.|+...+|+. +......+.+|.+. ..++=.=-.|++.|..|.-. +...+.+++.+..|+...
T Consensus 195 Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il~~l~~~Lq~~ 268 (746)
T PTZ00429 195 VASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLLTRVLPRMSHQ 268 (746)
T ss_pred HHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999998887654 45555555555321 22222223456666555422 233566677776666654
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.06 E-value=0.00036 Score=86.44 Aligned_cols=248 Identities=21% Similarity=0.238 Sum_probs=171.4
Q ss_pred hhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCC
Q 000718 909 LDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSP 988 (1334)
Q Consensus 909 ~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~ 988 (1334)
.+++..+.=-.++ | . =++.+.|-|++.|.+ ++..+++-+.+.++-+..-+++.+-=....|.+-| .++
T Consensus 24 ~~~l~kli~~~~~-G----~-~~~~~~~~vi~l~~s-----~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl-~~~ 91 (526)
T PF01602_consen 24 KEALKKLIYLMML-G----Y-DISFLFMEVIKLISS-----KDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL-NSP 91 (526)
T ss_dssp HHHHHHHHHHHHT-T--------GSTHHHHHCTCSS-----SSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH-CSS
T ss_pred HHHHHHHHHHHHc-C----C-CCchHHHHHHHHhCC-----CCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh-cCC
Confidence 4566666654444 3 1 233445556666654 67899999999999999999997777777777777 689
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch-hHHHHHHHhcCCChhHH
Q 000718 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG-YINEMAIRVEDEDQRIS 1067 (1334)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg-~l~~~a~~l~D~d~~I~ 1067 (1334)
+|.+|+.++=++|.++ -|.++++-.+.+...|.|++|.|||+|++.+.++...+==-+.. -+-.+..+|.|+|+.+.
T Consensus 92 n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~ 169 (526)
T PF01602_consen 92 NPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVV 169 (526)
T ss_dssp SHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHH
T ss_pred CHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhH
Confidence 9999999999999976 79999999999999999999999999999999999864333333 35678889999999999
Q ss_pred HHHHHHHHHHhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhhhhh-H--HHHHHHHHhhhhcccchHh
Q 000718 1068 NLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKKDKQ-M--EALVEKLCNRFSGVTDIRQ 1142 (1334)
Q Consensus 1068 ~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~i~kfLl~~i~Kdkq-~--e~LveKLc~Rf~~~~~~rq 1142 (1334)
.-|=.++.++ ++.|...-..+|..+..|..- ..++--...+++.|-.+...+.. . ..+++.+...+.... ..-
T Consensus 170 ~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~-~~V 247 (526)
T PF01602_consen 170 SAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSS-PSV 247 (526)
T ss_dssp HHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccc-cHH
Confidence 9999999999 333222226677777776532 33444455788888888763333 2 457777776666332 222
Q ss_pred HHHHHHHHhccCCChhHHHHHHHhHHHHHHhhC
Q 000718 1143 WEYISYCLSQLAFTEKGMKKLIESFKTYEHALS 1175 (1334)
Q Consensus 1143 wrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~ 1175 (1334)
--..+-|+..++.+...+++.+. .+...|.
T Consensus 248 ~~e~~~~i~~l~~~~~~~~~~~~---~L~~lL~ 277 (526)
T PF01602_consen 248 VYEAIRLIIKLSPSPELLQKAIN---PLIKLLS 277 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHhhcchHHHHhhHH---HHHHHhh
Confidence 23334444455555554444443 3444444
No 13
>PRK09687 putative lyase; Provisional
Probab=98.01 E-value=0.00046 Score=79.59 Aligned_cols=149 Identities=16% Similarity=0.159 Sum_probs=113.4
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc
Q 000718 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW 1014 (1334)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~ 1014 (1334)
.|.+...|.+ .++.+|.+|+-+||.+=.-. .--.+.+|+|..++.+.+++.||..++-+||+++...++....-
T Consensus 56 ~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~-~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a 129 (280)
T PRK09687 56 FRLAIELCSS-----KNPIERDIGADILSQLGMAK-RCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKI 129 (280)
T ss_pred HHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCc-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHH
Confidence 3455667777 67999999999999973211 11246789999998899999999999999999988776554444
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHh
Q 000718 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILG 1094 (1334)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis 1094 (1334)
.+.+-..+.|+++.||+.++.-|. -++-..-+.-+..+|.|+|+.|+.-|-.-+..+...+| ...|-.+.
T Consensus 130 ~~~l~~~~~D~~~~VR~~a~~aLg------~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~----~~~~~L~~ 199 (280)
T PRK09687 130 VEQSQITAFDKSTNVRFAVAFALS------VINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP----DIREAFVA 199 (280)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHh------ccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH----HHHHHHHH
Confidence 566778899999999999999883 44444455678889999999999999988877732332 34566677
Q ss_pred hccCC
Q 000718 1095 KLCNQ 1099 (1334)
Q Consensus 1095 ~Ls~~ 1099 (1334)
.|.|+
T Consensus 200 ~L~D~ 204 (280)
T PRK09687 200 MLQDK 204 (280)
T ss_pred HhcCC
Confidence 77654
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.93 E-value=0.22 Score=70.03 Aligned_cols=411 Identities=13% Similarity=0.111 Sum_probs=253.9
Q ss_pred HhHHHHHHHHhcCCC----chhHHHHHHHHHHHhhccCcch-----HHHHhhhcchhcccCcc-HHHHHHHHHHHhhcCC
Q 000718 560 SSTMPTLVQLMASSS----ASDVENTILLLMRCKQFQIDGA-----EACLHKMLPLVLSQDKS-IYEAVENAFITIYVRK 629 (1334)
Q Consensus 560 ~~al~~i~~LL~Sk~----~sDV~EaI~Ff~~a~~f~I~~a-----~~girkML~LVWskd~~-V~~~vi~ay~~Ly~~~ 629 (1334)
...++.+.+++.|.. ..|..-|+.++..-..-+-+.. ...+..+..|..++++. +++.+.+|-..+|-++
T Consensus 315 ~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~ 394 (2102)
T PLN03200 315 SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNA 394 (2102)
T ss_pred hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCCh
Confidence 456777888887641 1244455555533322221111 12235566677778766 5889999988877665
Q ss_pred C------hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC------CCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHH
Q 000718 630 S------PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG------DVSMSTISALWDFFCFNVSGTTPEKSRAALSVL 697 (1334)
Q Consensus 630 ~------~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~------~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL 697 (1334)
. .....+-|+.|+.-.+..-.+..=.-+..+...+ .++...|..|++... ..+...++.|+..|
T Consensus 395 ~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~----s~s~~iQ~~A~~~L 470 (2102)
T PLN03200 395 YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLG----LSSEQQQEYAVALL 470 (2102)
T ss_pred HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 4 2234455777776555443333322222333221 233345667777654 23567888999999
Q ss_pred HHHhccChh----hhh-hhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHccCCCCC
Q 000718 698 CMAAKSSAA----VLG-SHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPD 772 (1334)
Q Consensus 698 ~Mla~a~~~----iv~-~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~ 772 (1334)
+.++..+++ |+. ..+..|+++-- ..|..+-..+|.+|..+.....+.-.+=.++.++..|..++.. .+
T Consensus 471 ~nLa~~ndenr~aIieaGaIP~LV~LL~----s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s---gd 543 (2102)
T PLN03200 471 AILTDEVDESKWAITAAGGIPPLVQLLE----TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN---GG 543 (2102)
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC---CC
Confidence 999986653 222 34777777532 2477889999999999986322111111123345566666642 11
Q ss_pred CchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHH
Q 000718 773 NIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQL 852 (1334)
Q Consensus 773 ~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~l 852 (1334)
..+-+.|..+|++|..+.|. +.|+.+...+ ... ......+.+=++|++.--
T Consensus 544 ---~~~q~~Aa~AL~nLi~~~d~---~~I~~Lv~LL-lsd--------------------d~~~~~~aL~vLgnIlsl-- 594 (2102)
T PLN03200 544 ---PKGQEIAAKTLTKLVRTADA---ATISQLTALL-LGD--------------------LPESKVHVLDVLGHVLSV-- 594 (2102)
T ss_pred ---HHHHHHHHHHHHHHHhccch---hHHHHHHHHh-cCC--------------------ChhHHHHHHHHHHHHHhh--
Confidence 25568899999999654432 1234444333 211 012333344456665110
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHhhhccCCCCCCchhh
Q 000718 853 VYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIG 932 (1334)
Q Consensus 853 V~lE~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~ 932 (1334)
.. .+ |......+. .|
T Consensus 595 -----~~--------------------------------------------~~----d~~~~g~~~---~g--------- 609 (2102)
T PLN03200 595 -----AS--------------------------------------------LE----DLVREGSAA---ND--------- 609 (2102)
T ss_pred -----cc--------------------------------------------hh----HHHHHhhhc---cc---------
Confidence 00 00 001111000 12
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhh--h
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLA--V 1005 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~ll~~~le~s~~~~vR~N~vi~lgDL~--~ 1005 (1334)
-.|.++++-.+ +++..+..|.-+|+.++.-+.++|.. -+|-++..|. +.+..+|-.+..+|+=++ .
T Consensus 610 -gL~~Lv~LL~s-----gs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 610 -ALRTLIQLLSS-----SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred -cHHHHHHHHcC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHHHHHHhCC
Confidence 15666666666 56899999999999999999999875 4588888884 555668888999998888 3
Q ss_pred ccCc---cccc-chHHHhhhcCCCCHHHHHHHHHHHHHHHHcccccc----chhHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000718 1006 RFPN---LLEP-WTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV----KGYINEMAIRVEDEDQRISNLAKLFFHEL 1077 (1334)
Q Consensus 1006 rfpn---lve~-~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv----Kg~l~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1334)
++.| +++. -.+-|-..|++++..|+..|+..|.+|...+=.+. -|-|.-+...|-..+++.+.-|-.=+.+|
T Consensus 683 ~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 683 KENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred CHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4444 2332 46778899999999999999999999999885553 45578899999999999999999888888
Q ss_pred hccCC
Q 000718 1078 SKKGN 1082 (1334)
Q Consensus 1078 ~~K~~ 1082 (1334)
.+.+|
T Consensus 763 ~~~~~ 767 (2102)
T PLN03200 763 LKHFP 767 (2102)
T ss_pred HhCCC
Confidence 88763
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.71 E-value=0.00055 Score=73.70 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccch-HHHhhhcCCCCHHH
Q 000718 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWT-ENMYARLKDPSMAV 1029 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t-~~ly~~L~D~~~~V 1029 (1334)
||.+|..|+++||-++..-+.+.+.++|.++..| ++++|.||.++++++..|.-.-.--+.+.. ..+..+|.|+|+.|
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~I 79 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPEI 79 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHHH
Confidence 6899999999999999999999999999999999 788999999999999999887655556655 78889999999999
Q ss_pred HHHHHHHHHHHHHc
Q 000718 1030 RKNAVLVLSHLILN 1043 (1334)
Q Consensus 1030 R~~~l~vlthLIl~ 1043 (1334)
|..|...++.+...
T Consensus 80 r~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 80 RSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999887
No 16
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=97.64 E-value=0.00048 Score=74.88 Aligned_cols=153 Identities=14% Similarity=0.203 Sum_probs=123.4
Q ss_pred cccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhh
Q 000718 1009 NLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNL 1088 (1334)
Q Consensus 1009 nlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~ 1088 (1334)
.++..|.++|..+.-+++..||..|+.++...+..|++-++-.+..+.-+..|||+.|++.|.....+|..|.+..+.+.
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~ 83 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR 83 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 46778999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hhHHHhhc-------cCC--CCChhHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhhhccc----------chHhHHHHHH
Q 000718 1089 LPDILGKL-------CNQ--NLKTESFCNIMQLLIGFIK-KDKQMEALVEKLCNRFSGVT----------DIRQWEYISY 1148 (1334)
Q Consensus 1089 ~pdiis~L-------s~~--~~~~~~f~~i~kfLl~~i~-Kdkq~e~LveKLc~Rf~~~~----------~~rqwrdiaf 1148 (1334)
+.+.|..- ... ..........+..|.+.+. +-++...++-.||..|.... +-..++.++.
T Consensus 84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~Fla~ 163 (187)
T PF12830_consen 84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLLFLAE 163 (187)
T ss_pred HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence 99976542 111 1111114455566666665 34678999999999998853 3457888899
Q ss_pred HHhccCC-ChhHHH
Q 000718 1149 CLSQLAF-TEKGMK 1161 (1334)
Q Consensus 1149 cLslL~~-~ek~ik 1161 (1334)
+|+.||| +..-+=
T Consensus 164 nLA~l~y~~~~E~l 177 (187)
T PF12830_consen 164 NLATLPYQTQDEVL 177 (187)
T ss_pred HHhcCCCCChhHHH
Confidence 9999999 444433
No 17
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.034 Score=69.91 Aligned_cols=427 Identities=18% Similarity=0.202 Sum_probs=248.4
Q ss_pred HHHHHh-hcccch-HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhH
Q 000718 252 IMHLIH-KYDFVV-VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGV 329 (1334)
Q Consensus 252 IiqlL~-~~ehl~-~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~ 329 (1334)
+.++|. .++.+- +.|=..+.++++..|...++..+++-++.. ++..-|=+-.+|++.||..|.+-+=.|+.
T Consensus 40 L~~lLdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVask-------n~EVKkLVyvYLlrYAEeqpdLALLSInt 112 (968)
T KOG1060|consen 40 LKQLLDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASK-------NIEVKKLVYVYLLRYAEEQPDLALLSINT 112 (968)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHhhcCCCceeeeHHH
Confidence 556665 344443 666677777777777777888888888654 44566889999999999999999999999
Q ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCc
Q 000718 330 LILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSV 409 (1334)
Q Consensus 330 L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~i 409 (1334)
+.+-|..++.-+|+.-+-+|..|=+... -=-+|-.+.+=+.|.++|||.-|-..+.+|-..+
T Consensus 113 fQk~L~DpN~LiRasALRvlSsIRvp~I----------------aPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-- 174 (968)
T KOG1060|consen 113 FQKALKDPNQLIRASALRVLSSIRVPMI----------------APIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-- 174 (968)
T ss_pred HHhhhcCCcHHHHHHHHHHHHhcchhhH----------------HHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--
Confidence 9999999999999999999988732211 1235666778889999999999999998888765
Q ss_pred chhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCC
Q 000718 410 SIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDR 489 (1334)
Q Consensus 410 P~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~ 489 (1334)
| ....++.++.--=|.|+++.|--+|+--.... .|- ..+.+-..+.+...-|..+
T Consensus 175 ~-e~k~qL~e~I~~LLaD~splVvgsAv~AF~ev---CPe----rldLIHknyrklC~ll~dv----------------- 229 (968)
T KOG1060|consen 175 P-EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEV---CPE----RLDLIHKNYRKLCRLLPDV----------------- 229 (968)
T ss_pred h-hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHh---chh----HHHHhhHHHHHHHhhccch-----------------
Confidence 2 34457888888889999999999887654432 221 1112222222222211100
Q ss_pred CCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HH
Q 000718 490 GTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTL-VQ 568 (1334)
Q Consensus 490 ~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i-~~ 568 (1334)
.+-+++.-..+++.|-+ ..|.+ |.. ..
T Consensus 230 --------------------------------------------deWgQvvlI~mL~RYAR--~~l~~------P~~~~~ 257 (968)
T KOG1060|consen 230 --------------------------------------------DEWGQVVLINMLTRYAR--HQLPD------PTVVDS 257 (968)
T ss_pred --------------------------------------------hhhhHHHHHHHHHHHHH--hcCCC------cccccc
Confidence 00122333444455521 11111 000 00
Q ss_pred HhcCCCchhHHHHHHHHHHHhhccCcc-------hHHHHhhhcchhcccCccHHHHHHHHHHHhhcCCC--hHHHHHHHH
Q 000718 569 LMASSSASDVENTILLLMRCKQFQIDG-------AEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKS--PVETAKNLL 639 (1334)
Q Consensus 569 LL~Sk~~sDV~EaI~Ff~~a~~f~I~~-------a~~girkML~LVWskd~~V~~~vi~ay~~Ly~~~~--~~~ia~nLi 639 (1334)
.+. .+..++-+ ...+. +|++ -..-++..=+|+||.+++|.=++..+|+.| .|+ ...||+-|+
T Consensus 258 ~~e-~n~~~~~~-----~~~~~-~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~l--AP~~~~~~i~kaLv 328 (968)
T KOG1060|consen 258 SLE-DNGRSCNL-----KDKYN-EIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHL--APKNQVTKIAKALV 328 (968)
T ss_pred ccc-cCcccccc-----ccccc-ccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhh--CCHHHHHHHHHHHH
Confidence 000 00000000 00000 1111 134566677999999999999999999976 233 788999999
Q ss_pred HHHhhcCcchhhHHHHHHHHHHhCC-CC------------CHHHHHHHHHHh--hc--cCCC-------------CCH-H
Q 000718 640 NLAIDSNIGDQAAMEFIVGTLVSKG-DV------------SMSTISALWDFF--CF--NVSG-------------TTP-E 688 (1334)
Q Consensus 640 ~L~~~at~~dl~sLEeLl~~~~~~~-~I------------~~~vi~~LW~~~--~~--~~~~-------------~s~-~ 688 (1334)
.|+..-..-...-|.-+-..-++.. .+ ++..+ ++|.+= +. +..+ .+. .
T Consensus 329 rLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v-k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~ 407 (968)
T KOG1060|consen 329 RLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV-KILKLEILSNLANESNISEILRELQTYIKSSDRS 407 (968)
T ss_pred HHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH-HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchh
Confidence 9999887777776666544443332 11 12222 223221 10 0000 001 1
Q ss_pred hHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccccccccc-HHHHHHHHHHcc
Q 000718 689 KSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGS-RVFATLESLITG 767 (1334)
Q Consensus 689 ~~r~Al~lL~Mla~a~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~-~if~~L~~~l~~ 767 (1334)
=...|+.-+|-.|+..-++-..=++-|+..--. .|-..+..+-..|++|...+ |..| +|+.+|..++-.
T Consensus 408 faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llss----hde~Vv~eaV~vIk~Llq~~------p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 408 FAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSS----HDELVVAEAVVVIKRLLQKD------PAEHLEILFQLARLLDT 477 (968)
T ss_pred HHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhc----ccchhHHHHHHHHHHHHhhC------hHHHHHHHHHHHHHhhh
Confidence 112344455555555545544444444443222 25555555666667765432 4455 577777777642
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHHh
Q 000718 768 FWLPDNIWYTAADKAISAIYTIHPT---PETLAVDLVKKSLSAV 808 (1334)
Q Consensus 768 ~~~~~~~W~~~aeqaInaIy~l~~~---Pd~l~~~iIk~~~~~~ 808 (1334)
. -.++|.++| |+-++++ -=.+|.++++.++..|
T Consensus 478 i------~vp~ARA~I--iWLige~~e~vpri~PDVLR~laksF 513 (968)
T KOG1060|consen 478 I------LVPAARAGI--IWLIGEYCEIVPRIAPDVLRKLAKSF 513 (968)
T ss_pred h------hhhhhhcee--eeeehhhhhhcchhchHHHHHHHHhh
Confidence 1 123444443 2222222 2237888999998776
No 18
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.10 E-value=0.37 Score=60.22 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=99.2
Q ss_pred HhcCCcCCCCChHHHHHHHHHHHHHhh----cCHHHHHHh-HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-
Q 000718 941 FCRNFSLMNKYPELQASAMLALCRFMI----IDADYCDAN-LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW- 1014 (1334)
Q Consensus 941 iC~~~~~~~~~~~l~~~A~l~L~K~m~----vs~~~c~~~-l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~- 1014 (1334)
-|.+|. +|...++||.+||--+-- ++.++-..+ +..|+.+| .-|+.-|..-+.=++|-|..-|.|+=+.+
T Consensus 383 ~~~~~~---kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 383 MCLPPI---KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred cccccc---ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 355554 578999999998755421 122232222 34444555 66777788888888888888888876655
Q ss_pred ----hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHH-H-----HHHHhcCCChhHHHHHHHHHHHH
Q 000718 1015 ----TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYIN-E-----MAIRVEDEDQRISNLAKLFFHEL 1077 (1334)
Q Consensus 1015 ----t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~-~-----~a~~l~D~d~~I~~~a~~ff~eL 1077 (1334)
++.+-..+.|+++.+|++++-||-||+-|+-.+.|-+.. + ++....|||..|..-|=.....|
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL 531 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 677889999999999999999999999999999988873 2 66788999999998766555543
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.10 E-value=1.8 Score=56.16 Aligned_cols=601 Identities=18% Similarity=0.192 Sum_probs=310.2
Q ss_pred ccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHH------HhcCcccc-----cchhhhhhh
Q 000718 304 GAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAK------AFKDIEGE-----ASSKSVRLR 372 (1334)
Q Consensus 304 g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~------~l~~~~~~-----~~~k~~~~~ 372 (1334)
++|.+...++.-.|..|.+.-.-=..++.-|..--=+++--|.++.-.++.+ .+.+++.- ........+
T Consensus 352 AaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~ 431 (1233)
T KOG1824|consen 352 AAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSD 431 (1233)
T ss_pred HHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHh
Confidence 6788888998888999988777666777777765556666677766666543 22221111 111111222
Q ss_pred hHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHHHHHHhhccCCch--hHHHHHHHHHHHHHhhCC
Q 000718 373 TKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAEVAAGRLEDKSA--IVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 373 ~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~--~~iP~~~~~~v~~~av~RL~DKSs--~VRK~AiqLL~~lL~~nP 448 (1334)
+--.+...|..++.+.+.=+|-..+-++..|+.- ++.- .+...++.-.+.||.|||+ +-++-|+-+|...|..||
T Consensus 432 ~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~-~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~ 510 (1233)
T KOG1824|consen 432 QVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA-QHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHP 510 (1233)
T ss_pred hhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh-hcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCC
Confidence 2344666777788888888999999998888872 3333 3445788889999999985 578889999999998876
Q ss_pred C---CCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccc
Q 000718 449 F---GPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEG 525 (1334)
Q Consensus 449 f---~~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~ 525 (1334)
= .+.++ .|.++.. .++.+ .|+...
T Consensus 511 p~~fhp~~~----------------~Ls~~v~----------------------------------~aV~d-~fyKis-- 537 (1233)
T KOG1824|consen 511 PEVFHPHLS----------------ALSPPVV----------------------------------AAVGD-PFYKIS-- 537 (1233)
T ss_pred hhhcccchh----------------hhhhHHH----------------------------------HHhcC-chHhhh--
Confidence 2 11111 1111000 00000 011100
Q ss_pred cccCCCCCCCchhhHHHHHHHHHHHH--H---HHHHHHHHhHHHHHHHHhcCC-CchhHHH-HHHHHHH-HhhccCcchH
Q 000718 526 IADKDSSVPDVGNLEQTRALVASLEA--G---LRFSKCVSSTMPTLVQLMASS-SASDVEN-TILLLMR-CKQFQIDGAE 597 (1334)
Q Consensus 526 ~~~~~~~~~~~~~l~k~~~~v~yl~d--a---l~Fi~~i~~al~~i~~LL~Sk-~~sDV~E-aI~Ff~~-a~~f~I~~a~ 597 (1334)
.|.+.-..-.++|..- + ..+..-++.-+....+.|.++ +--+|.| ||..... .-.|| +.-.
T Consensus 538 ----------aEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg-D~l~ 606 (1233)
T KOG1824|consen 538 ----------AEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG-DFLG 606 (1233)
T ss_pred ----------HHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-hhhh
Confidence 1111111111222211 1 223333333444445555444 3345555 3333321 11233 3333
Q ss_pred HHHhhhcchhccc--CccHHHHHHHHHHHhhcCCC-----------hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC
Q 000718 598 ACLHKMLPLVLSQ--DKSIYEAVENAFITIYVRKS-----------PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG 664 (1334)
Q Consensus 598 ~girkML~LVWsk--d~~V~~~vi~ay~~Ly~~~~-----------~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~ 664 (1334)
.-.++.|+....+ +.--|-..+.|+-.++..+. -..++..|-+--...-.+-++.+++|+... .+
T Consensus 607 ~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~--~~ 684 (1233)
T KOG1824|consen 607 NELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY--SD 684 (1233)
T ss_pred hhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc
Confidence 3456666555433 23345566677777776665 134444454545556677788888888777 56
Q ss_pred CCCHHHHHHHHHHhhccCCCCCHHhH---HHHHHHHHHHhccChhhhhhh----HHHHHHhhcCCCCCCcHHHHHHHHHH
Q 000718 665 DVSMSTISALWDFFCFNVSGTTPEKS---RAALSVLCMAAKSSAAVLGSH----LQDIIDIGFGRWAKVEPLLARTACIA 737 (1334)
Q Consensus 665 ~I~~~vi~~LW~~~~~~~~~~s~~~~---r~Al~lL~Mla~a~~~iv~~~----ld~l~~iglg~~~~~D~~lar~~c~a 737 (1334)
-|++..++.+..... + =++..+- ..|+-+|+-++...|..+... ++.++..--++.-... +-.+|.-
T Consensus 685 ~~~~~~~e~vL~el~-~--Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~---al~~~l~ 758 (1233)
T KOG1824|consen 685 SIPAELLEAVLVELP-P--LISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGG---ALSALLL 758 (1233)
T ss_pred cccHHHHHHHHHHhh-h--hhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccch---HHHHHHH
Confidence 788888877766553 1 1233333 367889999999888877643 5556554434322111 2222322
Q ss_pred HH-hcccccccccccccccHHHHHHHHHHccCCC-------CCCchHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHH---
Q 000718 738 IQ-RLSQEDKKKLLLSYGSRVFATLESLITGFWL-------PDNIWYTAADKAISAIYTIHPT-PETLAVDLVKKSL--- 805 (1334)
Q Consensus 738 L~-~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~-------~~~~W~~~aeqaInaIy~l~~~-Pd~l~~~iIk~~~--- 805 (1334)
+. -+...+ +.+-+ |..|.+.+..+.. +...+|+.|.-|--.+ ..+++ --.+++.+++.+-
T Consensus 759 ~f~alV~t~------~~~l~-y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt-~~~~~~s~s~a~kl~~~~~s~~ 830 (1233)
T KOG1824|consen 759 FFQALVITK------EPDLD-YISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALT-CACPQKSKSLATKLIQDLQSPK 830 (1233)
T ss_pred HHHHHHhcC------CCCcc-HHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHhCCC
Confidence 21 121111 12222 5555566553211 2245666665444333 33331 1113344433332
Q ss_pred ---------HHhhcccCC--CC-CCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHHHH
Q 000718 806 ---------SAVFDYVGG--EE-PHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAM-NQLVYIE----SCVCEIRKQKIK 868 (1334)
Q Consensus 806 ---------~~~f~~~~~--~~-~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAl-k~lV~lE----~~~~~lKrrk~~ 868 (1334)
.-.||..+. +. +.++-++.-....+.-++..-+-.-+.+|.+|. +.=.||= ..+.+=||+..
T Consensus 831 s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyL- 909 (1233)
T KOG1824|consen 831 SSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYL- 909 (1233)
T ss_pred CchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHH-
Confidence 001111100 00 000000000000000011222222233333333 1111111 11111111110
Q ss_pred HHhhhhhhhccccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHH-------
Q 000718 869 KEKMIADDQNIHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKF------- 941 (1334)
Q Consensus 869 ~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~i------- 941 (1334)
.++..+| ++...+ ...|.|-|.+|
T Consensus 910 ------------------------------------------LLhSlke--vi~~~s-----vd~~~~~v~~IW~lL~k~ 940 (1233)
T KOG1824|consen 910 ------------------------------------------LLHSLKE--VIVSAS-----VDGLKPYVEKIWALLFKH 940 (1233)
T ss_pred ------------------------------------------HHHHHHH--HHHHhc-----cchhhhhHHHHHHHHHHh
Confidence 1122222 222100 01222333332
Q ss_pred hcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchH----H
Q 000718 942 CRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTE----N 1017 (1334)
Q Consensus 942 C~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~----~ 1017 (1334)
|.+.. +.-|..-.-||||++|++++.= +|-|=-.+ +|+.+..|+-+|-+.-=...-.|.-|||+.. .
T Consensus 941 cE~~e-----egtR~vvAECLGkL~l~epesL---lpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~ 1011 (1233)
T KOG1824|consen 941 CECAE-----EGTRNVVAECLGKLVLIEPESL---LPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGD 1011 (1233)
T ss_pred cccch-----hhhHHHHHHHhhhHHhCChHHH---HHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHH
Confidence 44422 3458899999999999999754 45554444 8999999999998876666677899999876 8
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000718 1018 MYARLKDPSMAVRKNAVLVLSHLILND 1044 (1334)
Q Consensus 1018 ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1334)
.|..++|||+.|||.||.++..-+-|-
T Consensus 1012 fl~~~~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1012 FLKLLRDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHccC
Confidence 899999999999999999998766543
No 20
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.0087 Score=75.29 Aligned_cols=188 Identities=19% Similarity=0.268 Sum_probs=143.3
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHH
Q 000718 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVR 1030 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR 1030 (1334)
|-.+..-..+-|+.+...-...|.-.++.+.+=. ..++|-||+=++=-+| +.|.+++++-+..-|-++|+|.++.||
T Consensus 62 dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~-~d~np~iR~lAlrtm~--~l~v~~i~ey~~~Pl~~~l~d~~~yvR 138 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDC-EDPNPLIRALALRTMG--CLRVDKITEYLCDPLLKCLKDDDPYVR 138 (734)
T ss_pred CchHHHHHHHHHHHhhccCchHHHhhhhhhhccC-CCCCHHHHHHHhhcee--eEeehHHHHHHHHHHHHhccCCChhHH
Confidence 3445555555555555555555555555444443 5677889975544444 579999999999999999999999999
Q ss_pred HHHHHHHH--HHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc-hhhhhhhHHHhhccC--CCCChhH
Q 000718 1031 KNAVLVLS--HLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNN-PIYNLLPDILGKLCN--QNLKTES 1105 (1334)
Q Consensus 1031 ~~~l~vlt--hLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n-~iyn~~pdiis~Ls~--~~~~~~~ 1105 (1334)
+++..-+. |+|-.+|+-.-|-+..+--++-|+||.+-.-|-.=..|++..+|+ ...+.-+.++.+|-. ...++=.
T Consensus 139 ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~ 218 (734)
T KOG1061|consen 139 KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWG 218 (734)
T ss_pred HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhh
Confidence 99887665 678899999999988777788899999999999999999999874 666667777777632 2445555
Q ss_pred HHHHHHHHHhhhhhh-hhHHHHHHHHHhhhhcccchH
Q 000718 1106 FCNIMQLLIGFIKKD-KQMEALVEKLCNRFSGVTDIR 1141 (1334)
Q Consensus 1106 f~~i~kfLl~~i~Kd-kq~e~LveKLc~Rf~~~~~~r 1141 (1334)
--.|++.+..|..|| +-++++++++|.|+.-+....
T Consensus 219 qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~av 255 (734)
T KOG1061|consen 219 QIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAV 255 (734)
T ss_pred HHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcce
Confidence 667999999999764 479999999999999886443
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.78 E-value=1.5 Score=55.06 Aligned_cols=351 Identities=16% Similarity=0.158 Sum_probs=202.8
Q ss_pred cchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHh-ccChhhhhhhHHHHHHhhcCCCCC
Q 000718 647 IGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAA-KSSAAVLGSHLQDIIDIGFGRWAK 725 (1334)
Q Consensus 647 ~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla-~a~~~iv~~~ld~l~~iglg~~~~ 725 (1334)
...+.+|.++-........++.-...++++.+. ....++---+..+|.++- ...|..+..+....+..||..
T Consensus 16 ~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~----~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h--- 88 (503)
T PF10508_consen 16 AERLEALPELKTELSSSPFLERLPEPVLFDCLN----TSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTH--- 88 (503)
T ss_pred cchHHHHHHHHHHHhhhhHHHhchHHHHHHHHh----hcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcC---
Confidence 456667777666665555333333333666554 124455556666777654 455666667777777778874
Q ss_pred CcHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHH-----
Q 000718 726 VEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDL----- 800 (1334)
Q Consensus 726 ~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~i----- 800 (1334)
+++.+-+.+|.+|.++..........-.++.++..+...+.. ++ ..+++.|++++-.|+.+|..+ ..+
T Consensus 89 ~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~---~d---~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~ 161 (503)
T PF10508_consen 89 PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD---PD---LSVAKAAIKALKKLASHPEGL-EQLFDSNL 161 (503)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC---Cc---HHHHHHHHHHHHHHhCCchhH-HHHhCcch
Confidence 677777778999999865443334555677888888777742 33 489999999999999988754 233
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhhhhc
Q 000718 801 VKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCE--IRKQKIKKEKMIADDQN 878 (1334)
Q Consensus 801 Ik~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~--lKrrk~~~ek~~~~~~~ 878 (1334)
+..+..-+ .. .+...-.|.+-++..+|-..--+.+.+... +..--. +-+
T Consensus 162 ~~~L~~l~-~~--------------------~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~-eL~------- 212 (503)
T PF10508_consen 162 LSKLKSLM-SQ--------------------SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLK-ELD------- 212 (503)
T ss_pred HHHHHHHH-hc--------------------cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHH-Hhc-------
Confidence 33333222 11 011223355555555544333233333221 111100 000
Q ss_pred cccCCCCCCCCCCccchhhhhccccchhhhhhhhHHHHHh----hhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHH
Q 000718 879 IHSNNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEK----EIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPEL 954 (1334)
Q Consensus 879 ~~~~~~~~~~~~~~~~~~~Elgl~t~eD~~~d~i~~i~E~----eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l 954 (1334)
+ +++ ++. =...|.+..+++. +.+.. .+++..+..++...=.+| +. ...+
T Consensus 213 -----------~--dDi-----Lvq--lnalell~~La~~~~g~~yL~~----~gi~~~L~~~l~~~~~dp-~~--~~~~ 265 (503)
T PF10508_consen 213 -----------S--DDI-----LVQ--LNALELLSELAETPHGLQYLEQ----QGIFDKLSNLLQDSEEDP-RL--SSLL 265 (503)
T ss_pred -----------C--ccH-----HHH--HHHHHHHHHHHcChhHHHHHHh----CCHHHHHHHHHhccccCC-cc--cchh
Confidence 0 000 000 0012333333332 12222 455555555555544444 11 1223
Q ss_pred HHHHHHHHHHHhhcCHHHHHHhHHHHHHHH---hcCCChhhHhhHHHHhhhhh----------hccCcccccchHHHhhh
Q 000718 955 QASAMLALCRFMIIDADYCDANLQLLFTVV---ESSPSEIVRSNCTIALGDLA----------VRFPNLLEPWTENMYAR 1021 (1334)
Q Consensus 955 ~~~A~l~L~K~m~vs~~~c~~~l~ll~~~l---e~s~~~~vR~N~vi~lgDL~----------~rfpnlve~~t~~ly~~ 1021 (1334)
--..+..+|.+..+++.-+..-.|.|+..| ..+.|+..+..++=++|-+| ..++.-++.....++..
T Consensus 266 l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~ 345 (503)
T PF10508_consen 266 LPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDA 345 (503)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 334456777777767666666666665444 36789999999999999876 34555666667777777
Q ss_pred cCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000718 1022 LKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1022 L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1334)
.+.....+|-.+|--|+.++-.+--+ ++.+|-.+++..|.-++.+.
T Consensus 346 ~~~~~~~lk~r~l~al~~il~~~~~~--------------~~~~i~~~~~~w~~~~~~~~ 391 (503)
T PF10508_consen 346 IKSGSTELKLRALHALASILTSGTDR--------------QDNDILSITESWYESLSGSP 391 (503)
T ss_pred hcCCchHHHHHHHHHHHHHHhcCCCC--------------chHHHHHHHHHHHHHhcCCc
Confidence 77777788888888888776433222 45666689999998887775
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.69 E-value=0.014 Score=64.79 Aligned_cols=127 Identities=15% Similarity=0.152 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHHhhcCHH----HHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-hHHHhhhcCCC
Q 000718 951 YPELQASAMLALCRFMIIDAD----YCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-TENMYARLKDP 1025 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~----~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~-t~~ly~~L~D~ 1025 (1334)
...+...|..++..+...-.. +++.-+|.|+..+ .++...||..+.-+|..++-..| ....- .+.+...+.++
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~K 143 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSK 143 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCC
Confidence 356788888888877665543 3455556665555 44567899999999999888766 11222 57888899999
Q ss_pred CHHHHHHHHHHHHHHHHccc-----cccch---hH-HHHHHHhcCCChhHHHHHHHHHHHHhc
Q 000718 1026 SMAVRKNAVLVLSHLILNDM-----MKVKG---YI-NEMAIRVEDEDQRISNLAKLFFHELSK 1079 (1334)
Q Consensus 1026 ~~~VR~~~l~vlthLIl~dm-----iKvKg---~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~ 1079 (1334)
++.||..|+..|.+.+..-= +...+ ++ .-+.+++.|+++.+|+.||..|..+.+
T Consensus 144 n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 144 NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999875433 33322 34 568899999999999999999986644
No 23
>PRK09687 putative lyase; Provisional
Probab=96.47 E-value=0.056 Score=62.59 Aligned_cols=163 Identities=20% Similarity=0.149 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.++.+|++|+-+||.++.-.......-++.+...+ ..+++.||-.++-+||.+.- +.-.+.|-..|.|+++.|
T Consensus 103 ~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~------~~ai~~L~~~L~d~~~~V 175 (280)
T PRK09687 103 KSACVRASAINATGHRCKKNPLYSPKIVEQSQITA-FDKSTNVRFAVAFALSVIND------EAAIPLLINLLKDPNGDV 175 (280)
T ss_pred CCHHHHHHHHHHHhcccccccccchHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC------HHHHHHHHHHhcCCCHHH
Confidence 56788999999999885433323333333333333 56688899999988886542 345677888888999999
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHH
Q 000718 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNI 1109 (1334)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~i 1109 (1334)
|..|+.-|.++ +. .-..-+..+..+|.|+|+.|+.-|-.-+.++... ..+|-+|..|.++.+ +..+
T Consensus 176 R~~A~~aLg~~---~~-~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~------~av~~Li~~L~~~~~----~~~a 241 (280)
T PRK09687 176 RNWAAFALNSN---KY-DNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK------RVLSVLIKELKKGTV----GDLI 241 (280)
T ss_pred HHHHHHHHhcC---CC-CCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh------hHHHHHHHHHcCCch----HHHH
Confidence 99999888877 11 1123335577788899999988888776654322 356777777765432 2222
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHhhhh
Q 000718 1110 MQLLIGFIKKDKQMEALVEKLCNRFS 1135 (1334)
Q Consensus 1110 ~kfLl~~i~Kdkq~e~LveKLc~Rf~ 1135 (1334)
..= ++-| +++..-....++..++.
T Consensus 242 ~~A-Lg~i-g~~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 242 IEA-AGEL-GDKTLLPVLDTLLYKFD 265 (280)
T ss_pred HHH-HHhc-CCHhHHHHHHHHHhhCC
Confidence 222 2222 33444555555555554
No 24
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.46 E-value=0.15 Score=65.54 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=136.7
Q ss_pred hhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCC
Q 000718 909 LDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSP 988 (1334)
Q Consensus 909 ~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~ 988 (1334)
.|++..|.-. +..| +. ++.+.|=|++-... +|..|++--.+-|-.+--..++-|--.++.+.+=+ .++
T Consensus 37 idAmK~iIa~-M~~G----~d-mssLf~dViK~~~t-----rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl-~d~ 104 (757)
T COG5096 37 IDAMKKIIAQ-MSLG----ED-MSSLFPDVIKNVAT-----RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDL-QDP 104 (757)
T ss_pred HHHHHHHHHH-HhcC----CC-hHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhc-cCC
Confidence 5778887764 4466 44 55555655544433 68899999999999999999998888889888888 789
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchh-HHHHHH-HhcCCChhH
Q 000718 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGY-INEMAI-RVEDEDQRI 1066 (1334)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~-l~~~a~-~l~D~d~~I 1066 (1334)
+|-||++++=.||+| |=|.+++++.+-+=++|.|+++.|||+|..-+.-|-.-|+=-+.+- +....+ ++.|+||.+
T Consensus 105 N~~iR~~AlR~ls~l--~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~V 182 (757)
T COG5096 105 NEEIRGFALRTLSLL--RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIV 182 (757)
T ss_pred CHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchH
Confidence 999999999999987 5599999999999999999999999999999999986665555554 444444 555999999
Q ss_pred HHHHHHHHHHHhccCCchhhhhhhHHHhhcc
Q 000718 1067 SNLAKLFFHELSKKGNNPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1067 ~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1334)
-.-|-.=+.++....-...+..+.-.|.+|.
T Consensus 183 i~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 183 IANALASLAEIDPELAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHhhhcc
Confidence 8888777777777633556666666666654
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.24 E-value=0.016 Score=56.54 Aligned_cols=101 Identities=19% Similarity=0.212 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc-----cchHHHhhhcCCCCHHHHHHHHHHHHHHHHcc-----cc
Q 000718 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE-----PWTENMYARLKDPSMAVRKNAVLVLSHLILND-----MM 1046 (1334)
Q Consensus 977 l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve-----~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~d-----mi 1046 (1334)
+|.|...|. .+++.+|.+++.+++-++...|.... .-.+.+-..|+|+++.||+.|+..|++|..++ .+
T Consensus 9 i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 9 LPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred hHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 455666663 44466777777777777665333222 33556666777778888888888888886554 22
Q ss_pred ccchhHHHHHHHhcCCChhHHHHHHHHHHHHh
Q 000718 1047 KVKGYINEMAIRVEDEDQRISNLAKLFFHELS 1078 (1334)
Q Consensus 1047 KvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~ 1078 (1334)
.-.|-+..+..++.+++.+++..|-.+|..|.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22455677777787778888877777776653
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=1.1 Score=56.35 Aligned_cols=409 Identities=17% Similarity=0.229 Sum_probs=227.2
Q ss_pred HHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhccccccccc
Q 000718 670 TISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKL 749 (1334)
Q Consensus 670 vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~a~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~ 749 (1334)
+|-++.+.|. .-++.=|.-|+--+--.--..+.-+.-++|..+...+.-.+..|+..-+.+|++|..|-.- ....
T Consensus 175 mipkfl~f~~----h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev-r~dk 249 (885)
T KOG2023|consen 175 MIPKFLQFFK----HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV-RPDK 249 (885)
T ss_pred hHHHHHHHHh----CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-cHHh
Confidence 4455666664 2255555555443332222334455568999888877666788999999999999887542 1111
Q ss_pred ccccccHHHHHHHHHHccCCCCCCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCC
Q 000718 750 LLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMP 829 (1334)
Q Consensus 750 r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~ 829 (1334)
-.|+-+.|++-+..... ..+. .+|-.|-..-.+++++| +|.++++....++-.
T Consensus 250 l~phl~~IveyML~~tq---d~dE---~VALEACEFwla~aeqp--i~~~~L~p~l~kliP------------------- 302 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQ---DVDE---NVALEACEFWLALAEQP--ICKEVLQPYLDKLIP------------------- 302 (885)
T ss_pred cccchHHHHHHHHHHcc---Ccch---hHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHH-------------------
Confidence 23454555544433322 2232 38888889999999999 777776665544310
Q ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhh---ccccCCCCCCCCCCccchhhhhccccc
Q 000718 830 TSVQVSKLGRYLFILSHIAMNQLVYIESCVCEIRKQKIKKE--KMIADDQ---NIHSNNNTNGDLPKDTSINAELGLAAS 904 (1334)
Q Consensus 830 ~~~~~~~LsqllFivGhVAlk~lV~lE~~~~~lKrrk~~~e--k~~~~~~---~~~~~~~~~~~~~~~~~~~~Elgl~t~ 904 (1334)
|-+.-++|=|..+.-++ ..+++ ....+.+ +... ++..++..+. ..
T Consensus 303 -----------------vLl~~M~Ysd~D~~LL~--~~eeD~~vpDreeDIkPRfhk----sk~~~~~~~~-------~~ 352 (885)
T KOG2023|consen 303 -----------------VLLSGMVYSDDDIILLK--NNEEDESVPDREEDIKPRFHK----SKEHGNGEDA-------DD 352 (885)
T ss_pred -----------------HHHccCccccccHHHhc--CccccccCCchhhhccchhhh----chhccCcccc-------cc
Confidence 01122233333222222 00000 0000000 0000 0000000000 01
Q ss_pred hhhhhhhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH
Q 000718 905 EDAKLDTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV 984 (1334)
Q Consensus 905 eD~~~d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~l 984 (1334)
||++-|. .=.+ .-+ .+=.||.|..-+|.=+ +.-|=++-||.+|-.|
T Consensus 353 eDdddDe--------~DDd-----D~~------------------~dWNLRkCSAAaLDVL---anvf~~elL~~l~PlL 398 (885)
T KOG2023|consen 353 EDDDDDE--------DDDD-----DAF------------------SDWNLRKCSAAALDVL---ANVFGDELLPILLPLL 398 (885)
T ss_pred ccccccc--------cccc-----ccc------------------ccccHhhccHHHHHHH---HHhhHHHHHHHHHHHH
Confidence 1211111 1011 011 2336777777776644 5556777777777666
Q ss_pred hc---CCChhhHhhHHHHhhhhhhccCcccccc----hHHHhhhcCCCCHHHHHHHHHHH---HHHHHccc--cccchhH
Q 000718 985 ES---SPSEIVRSNCTIALGDLAVRFPNLLEPW----TENMYARLKDPSMAVRKNAVLVL---SHLILNDM--MKVKGYI 1052 (1334)
Q Consensus 985 e~---s~~~~vR~N~vi~lgDL~~rfpnlve~~----t~~ly~~L~D~~~~VR~~~l~vl---thLIl~dm--iKvKg~l 1052 (1334)
+. ++.+.||.-.|.|+|-+|-=--+-+=|| .|++-.+|.|+.|.||+-|-=+| +|-+..+= --.|.-+
T Consensus 399 k~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL 478 (885)
T KOG2023|consen 399 KEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVL 478 (885)
T ss_pred HHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHH
Confidence 43 5678999999999998875443434444 57888899999999999764444 45555544 1234455
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccC-------C--CCChhHHHHHHHHHHhhhhhhhhH
Q 000718 1053 NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCN-------Q--NLKTESFCNIMQLLIGFIKKDKQM 1123 (1334)
Q Consensus 1053 ~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~-------~--~~~~~~f~~i~kfLl~~i~Kdkq~ 1123 (1334)
-.+.+++.|.+.+|+.-|=.=|..|-.....-+.-++-.|+-+|-- . -+=.+...+.-...=..++|-.-+
T Consensus 479 ~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi 558 (885)
T KOG2023|consen 479 EGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI 558 (885)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH
Confidence 6799999999999999998877766555323333334444433320 0 111222222222222233333333
Q ss_pred HHHHHHHHhhhhcccchHhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhC------chHHHHHHHHHHHHh
Q 000718 1124 EALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALS------EDSVMDNFRNIINKS 1190 (1334)
Q Consensus 1124 e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~------d~~V~~~F~~Ii~k~ 1190 (1334)
+-|+.-|.++ | ++|+=++|.+=-|.||+.+..-.|+ -++||++=..|+.|+
T Consensus 559 qiLmPPLi~K---------W-------~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 559 QILMPPLIEK---------W-------ELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKT 615 (885)
T ss_pred HHhccHHHHH---------H-------HhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 4333333332 2 4677788888899999999888885 468999988888876
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.10 E-value=0.041 Score=53.55 Aligned_cols=101 Identities=23% Similarity=0.162 Sum_probs=80.5
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc
Q 000718 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1334)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpn 1009 (1334)
.|.+.+.+.+ .++.++..|+.+|+.++..++..+.. -+|.|...|. ++++.+|.+++-+|+-|+...|.
T Consensus 9 i~~l~~~l~~-----~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 9 LPALVSLLSS-----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK-SEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred hHHHHHHHHc-----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHH
Confidence 4555555555 45799999999999998876666554 4688888884 57899999999999999987764
Q ss_pred ccc-----cchHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000718 1010 LLE-----PWTENMYARLKDPSMAVRKNAVLVLSHLI 1041 (1334)
Q Consensus 1010 lve-----~~t~~ly~~L~D~~~~VR~~~l~vlthLI 1041 (1334)
..+ .-.+.+-..|.+++..||+.++.+|.+|.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 322 14778889999999999999999999874
No 28
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=95.99 E-value=0.1 Score=59.62 Aligned_cols=128 Identities=17% Similarity=0.264 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHH------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc--ccccchHHHhhh
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDA------NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN--LLEPWTENMYAR 1021 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~------~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpn--lve~~t~~ly~~ 1021 (1334)
+||.+|..|..+|++...- .|+.+ .++++.++| ..|+|.+|.+++-++.+|+.-.+| .|+.|.+++-..
T Consensus 25 ~dp~i~e~al~al~n~aaf--~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~ 101 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAF--PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEE 101 (254)
T ss_pred CChHHHHHHHHHHHhhccC--hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH
Confidence 6899999999999996332 24443 368888888 668999999999999999998776 478888888885
Q ss_pred cCC--CCHHHHHHHHHHHHHHHHcc---ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000718 1022 LKD--PSMAVRKNAVLVLSHLILND---MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1022 L~D--~~~~VR~~~l~vlthLIl~d---miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1334)
... -+..|+..+|.+|++|-..+ -+ +.+.+..+..+|.-.+..++--+-..+..||.+.
T Consensus 102 ~~s~~lns~~Q~agLrlL~nLtv~~~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 102 TVSSPLNSEVQLAGLRLLTNLTVTNDYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HhcCCCCCHHHHHHHHHHHccCCCcchhhh-HHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 333 36789999999999996555 11 2346777778888888888777777777787764
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.73 E-value=0.028 Score=52.53 Aligned_cols=82 Identities=24% Similarity=0.363 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHH
Q 000718 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMA 1056 (1334)
Q Consensus 977 l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a 1056 (1334)
+|.|+..|.+++++.||.+++-++|.+.- | .-.+.+...|+|+++.||..++..|..+ .-+.-+-.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i------~~~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P----EAIPALIELLKDEDPMVRRAAARALGRI------GDPEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H----HHHHHHHHHHTSSSHHHHHHHHHHHHCC------HHHHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H----hHHHHHHHHHcCCCHHHHHHHHHHHHHh------CCHHHHHHHH
Confidence 57888888889999999999999995432 2 3367788888999999999999988865 2233334566
Q ss_pred HHhcCCC-hhHHHHH
Q 000718 1057 IRVEDED-QRISNLA 1070 (1334)
Q Consensus 1057 ~~l~D~d-~~I~~~a 1070 (1334)
.++.|++ ..++..|
T Consensus 69 ~~l~~~~~~~vr~~a 83 (88)
T PF13646_consen 69 KLLQDDDDEVVREAA 83 (88)
T ss_dssp HHHTC-SSHHHHHHH
T ss_pred HHHcCCCcHHHHHHH
Confidence 6666654 4445544
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.69 E-value=1.7 Score=54.69 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=152.7
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHH-----HhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000718 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCD-----ANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~-----~~l~ll~~~le~s~~~~vR~N~vi~lgD 1002 (1334)
.+++..+.|++...-.+ .++.+|.-|+-+++++---++..++ .-+++++..| ..++..|...++-+|.+
T Consensus 72 ~~l~~~~~~~L~~gL~h-----~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 72 DSLLPQYQPFLQRGLTH-----PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKK 145 (503)
T ss_pred HHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHH
Confidence 77889999999988887 5689999999999998766666333 4468888888 88899999999999999
Q ss_pred hhhccCcc---cccc-hHHHhhhcCCCCHHHHHHHHHHHHHHH-----HccccccchhHHHHHHHhcCCChhHHHHHHHH
Q 000718 1003 LAVRFPNL---LEPW-TENMYARLKDPSMAVRKNAVLVLSHLI-----LNDMMKVKGYINEMAIRVEDEDQRISNLAKLF 1073 (1334)
Q Consensus 1003 L~~rfpnl---ve~~-t~~ly~~L~D~~~~VR~~~l~vlthLI-----l~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~f 1073 (1334)
|+-..+.+ +++. ...|-..+..++..||...+.++.++- .-.++.-.|-+..+..+|.|+|.-++--|-..
T Consensus 146 l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalel 225 (503)
T PF10508_consen 146 LASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALEL 225 (503)
T ss_pred HhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHH
Confidence 99654443 2333 566666676679999999999999985 33566678888899999999998888888888
Q ss_pred HHHHhccCCchhh----hhhhHHHhhccCCCCCh----hHHHHHHHHHHhhhh-hhhhHH----HHHHHHHhhhhcccch
Q 000718 1074 FHELSKKGNNPIY----NLLPDILGKLCNQNLKT----ESFCNIMQLLIGFIK-KDKQME----ALVEKLCNRFSGVTDI 1140 (1334)
Q Consensus 1074 f~eL~~K~~n~iy----n~~pdiis~Ls~~~~~~----~~f~~i~kfLl~~i~-Kdkq~e----~LveKLc~Rf~~~~~~ 1140 (1334)
+.+|+.+..+.=| +.++.+...+.+..-++ =-.-.+|+|.=..-. ...+.. .++++|. ++....++
T Consensus 226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~-~~~~s~d~ 304 (503)
T PF10508_consen 226 LSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLF-SMLESQDP 304 (503)
T ss_pred HHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 9999996433221 12333333333221111 111224455432222 122222 3333333 22233444
Q ss_pred HhHHHHHH-HHhccCCChhHHHHH
Q 000718 1141 RQWEYISY-CLSQLAFTEKGMKKL 1163 (1334)
Q Consensus 1141 rqwrdiaf-cLslL~~~ek~ikKL 1163 (1334)
.. +.+|| +|+.|-.+.+|-.-|
T Consensus 305 ~~-~~~A~dtlg~igst~~G~~~L 327 (503)
T PF10508_consen 305 TI-REVAFDTLGQIGSTVEGKQLL 327 (503)
T ss_pred hH-HHHHHHHHHHHhCCHHHHHHH
Confidence 43 36677 999999999997777
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.42 E-value=0.083 Score=70.54 Aligned_cols=115 Identities=20% Similarity=0.243 Sum_probs=89.5
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc
Q 000718 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW 1014 (1334)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~ 1014 (1334)
.|.+..+..+ .++.+|++|+.+|+++..-. .-.+.+...| .++++.||..++-+||-+.. +.-
T Consensus 777 ~~~L~~ll~D-----~d~~VR~aA~~aLg~~g~~~-----~~~~~l~~aL-~d~d~~VR~~Aa~aL~~l~~------~~a 839 (897)
T PRK13800 777 GDAVRALTGD-----PDPLVRAAALAALAELGCPP-----DDVAAATAAL-RASAWQVRQGAARALAGAAA------DVA 839 (897)
T ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHhcCCcc-----hhHHHHHHHh-cCCChHHHHHHHHHHHhccc------cch
Confidence 3555555555 57899999999999996531 1235577777 66789999999999997653 344
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchh-HHHHHHHhcCCChhHHHHHHH
Q 000718 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGY-INEMAIRVEDEDQRISNLAKL 1072 (1334)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~-l~~~a~~l~D~d~~I~~~a~~ 1072 (1334)
.+.|...|.|+++.||+.++..|..+ +.... ...+..++.|+|+.|+.-|..
T Consensus 840 ~~~L~~~L~D~~~~VR~~A~~aL~~~------~~~~~a~~~L~~al~D~d~~Vr~~A~~ 892 (897)
T PRK13800 840 VPALVEALTDPHLDVRKAAVLALTRW------PGDPAARDALTTALTDSDADVRAYARR 892 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcc------CCCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 58899999999999999999999885 32333 356778999999999998865
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.42 E-value=0.31 Score=54.01 Aligned_cols=134 Identities=19% Similarity=0.241 Sum_probs=93.6
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHhH----HHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000718 301 DTVGAENIGRFLVELADRLPKLISTNIGV----LILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1334)
Q Consensus 301 D~~g~Kn~s~FL~~Lae~~P~lvl~~is~----L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1334)
-++..++-..++..|+...+.-+-+.+.. |+..+....-.+|.+...++..|+...- -. ..-
T Consensus 66 Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----------~~----~~~ 131 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----------YS----PKI 131 (228)
T ss_dssp ---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----------H------HH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----------cH----HHH
Confidence 35566777788888877777666555554 4445677788999999999999984321 01 233
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC---cchh---hHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000718 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHS---VSIG---LWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 377 lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~---iP~~---~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
++..|.....+.|+-+|..+++.+..+++... -.+. ....+......-|.|.++-||++|-+.+..+....|
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 48889999999999999999999999988644 1111 135789999999999999999999999999977666
No 33
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.38 E-value=0.2 Score=64.44 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=129.9
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHH
Q 000718 268 DAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVG 347 (1334)
Q Consensus 268 e~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve 347 (1334)
..++.|....|.+.|..+|+|.+. + +|..--|=+-.+|...|+.-|..++-.+..++.-|..++=.+|++.+-
T Consensus 42 ~iIa~M~~G~dmssLf~dViK~~~--t-----rd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR 114 (757)
T COG5096 42 KIIAQMSLGEDMSSLFPDVIKNVA--T-----RDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALR 114 (757)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHH--h-----cCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 445555666677888999999986 2 567777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcC--CcchhhHHHHHHHHHhhc
Q 000718 348 VLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEH--SVSIGLWNEVAEVAAGRL 425 (1334)
Q Consensus 348 ~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~--~iP~~~~~~v~~~av~RL 425 (1334)
.++.+=. ++. ...+++.+.+.+.|-+||||..|.=++.+|.+.+ -+|-. +...+-..=+
T Consensus 115 ~ls~l~~------------~el----~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~---g~~~~l~~l~ 175 (757)
T COG5096 115 TLSLLRV------------KEL----LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHEL---GLIDILKELV 175 (757)
T ss_pred HHHhcCh------------HHH----HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcc---cHHHHHHHHh
Confidence 9998721 122 6789999999999999999999999999999753 33321 2344444556
Q ss_pred cCCchhHHHHHHHHHHHHHhh--CCCC-------CCCChhHHHH
Q 000718 426 EDKSAIVRKSALNLLVMMLQH--NPFG-------PQLRIASFEA 460 (1334)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL~~--nPf~-------~~L~~~~~~~ 460 (1334)
.|-++.|-.||+.-|..+=.. +||. ++|....|..
T Consensus 176 ~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~ 219 (757)
T COG5096 176 ADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSV 219 (757)
T ss_pred hCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhh
Confidence 799999999999887776432 4442 4555555553
No 34
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=16 Score=49.07 Aligned_cols=827 Identities=15% Similarity=0.147 Sum_probs=395.0
Q ss_pred cchhHHHHHHHHHHHHHhhc-cc-hhhhH----HHHHHHHh-hcccc-hHHHHHHHHHHHHHcCCchhHHHHHHHHhhcC
Q 000718 223 KDADTKDALCRIIGACATKY-HY-IEQSC----ASIMHLIH-KYDFV-VVHMADAVAGAEKKYADGSLATYLIREIGRTN 294 (1334)
Q Consensus 223 K~~~~r~~if~il~~~vk~y-~h-~~~~~----~~IiqlL~-~~ehl-~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~ 294 (1334)
.+..+|...--.+...+.+| .- ....+ ++|++.++ .-+|. ...+|+.++.+++.-... ==.++|.-+=+-.
T Consensus 49 ~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~ 127 (1075)
T KOG2171|consen 49 ADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQST 127 (1075)
T ss_pred CChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHh
Confidence 56677776555554444443 22 22334 44444433 23332 366788887777654333 1134554443322
Q ss_pred CCccccCccccchHHHHHHHHHhhhhhHHHhhHhHH----HHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhh
Q 000718 295 PKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVL----ILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVR 370 (1334)
Q Consensus 295 ~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L----~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~ 370 (1334)
.+ .|.+.--.-=.-|..+.+..+....+++..| .+.++..|-++|-+-+.++|.++...-.+...-+..+..
T Consensus 128 ~S---~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~l- 203 (1075)
T KOG2171|consen 128 KS---PNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDL- 203 (1075)
T ss_pred cC---CCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHH-
Confidence 11 1222222222335567777776666555544 445677787899999999999975532111000111111
Q ss_pred hhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHhhC
Q 000718 371 LRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRL--EDKSAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 371 ~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL--~DKSs~VRK~AiqLL~~lL~~n 447 (1334)
.=.++..|.+=+.|-+.=+=.-++..+..|.+. ..+-..+...|+....+=. .+....+|-.||++|+.+.++-
T Consensus 204 ---lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 204 ---LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred ---hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 345777888888888877778888888888885 3444345556666554444 4555789999999999999987
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhh-hhhcccCCCCCccccc
Q 000718 448 PFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQ-QESLTDSCLPLADEGI 526 (1334)
Q Consensus 448 Pf~~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~-~ea~~~~~~~~~~~~~ 526 (1334)
|-+.+++.. +-.+|=-. -|.-|.+. ..+.++.+.++++++. +++...- ..++
T Consensus 281 p~~~k~~~~-~~~~lv~~--~l~~mte~----------~~D~ew~~~d~~ded~--~~~~~~~A~~~l------------ 333 (1075)
T KOG2171|consen 281 PAMCKKLAL-LGHTLVPV--LLAMMTEE----------EDDDEWSNEDDLDEDD--EETPYRAAEQAL------------ 333 (1075)
T ss_pred HHHhhhchh-hhccHHHH--HHHhcCCc----------ccchhhcccccccccc--ccCcHHHHHHHH------------
Confidence 655544433 22222111 12222110 0112233222111111 1110000 0000
Q ss_pred ccCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcch
Q 000718 527 ADKDSSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPL 606 (1334)
Q Consensus 527 ~~~~~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~L 606 (1334)
..+.-.+-=...+--.++.++++|.|.+-.+=.-|+-=|..+ .+|+.+-|++-|+=
T Consensus 334 --------------------DrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i----~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 334 --------------------DRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVI----AEGCSDVMIGNLPK 389 (1075)
T ss_pred --------------------HHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----HcccHHHHHHHHHH
Confidence 000000000012233566778888888888777776666555 46777777765543
Q ss_pred hcccCccHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCC
Q 000718 607 VLSQDKSIYEAVENAFITIYVRKS---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVS 683 (1334)
Q Consensus 607 VWskd~~V~~~vi~ay~~Ly~~~~---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~ 683 (1334)
| -..|++- ++.| ..+.|-|.|..+..- |---+..-. ...+.+..+..+ ...
T Consensus 390 I-------l~~Vl~~-----l~DphprVr~AA~naigQ~std-------l~p~iqk~~-~e~l~~aL~~~l------d~~ 443 (1075)
T KOG2171|consen 390 I-------LPIVLNG-----LNDPHPRVRYAALNAIGQMSTD-------LQPEIQKKH-HERLPPALIALL------DST 443 (1075)
T ss_pred H-------HHHHHhh-----cCCCCHHHHHHHHHHHHhhhhh-------hcHHHHHHH-HHhccHHHHHHh------ccc
Confidence 3 2333332 2233 455666666555411 111111111 123444444443 333
Q ss_pred CCCHHhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCCCCCCcHHHHHHHHH-HHHhcccccccccccccccHHHHHHH
Q 000718 684 GTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACI-AIQRLSQEDKKKLLLSYGSRVFATLE 762 (1334)
Q Consensus 684 ~~s~~~~r~Al~lL~Mla~a~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~-aL~~l~~~~k~~~r~~~~~~if~~L~ 762 (1334)
+....+.++|--++.-.....++++..-|+.|+.--|+....++...+++.+. +|--........| .+-|.++.
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F-----~pY~d~~M 518 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKF-----IPYFDRLM 518 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhh-----HhHHHHHH
Confidence 45677888888888888888889999888888773222222233334443332 2223322222222 23344444
Q ss_pred HHHccC--CCCCCchHHHHHHHHHHHHhc----CCCh-HHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHh
Q 000718 763 SLITGF--WLPDNIWYTAADKAISAIYTI----HPTP-ETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVS 835 (1334)
Q Consensus 763 ~~l~~~--~~~~~~W~~~aeqaInaIy~l----~~~P-d~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1334)
-.+..| ...+.+-..+.-+.+..|=.+ ...+ -..+.++|+-+..--++.... +++. ......
T Consensus 519 p~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~-----dd~~------~sy~~~ 587 (1075)
T KOG2171|consen 519 PLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDD-----DDPL------RSYMIA 587 (1075)
T ss_pred HHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhh-----cccc------HHHHHH
Confidence 443311 112233344443333333222 1111 112333333222111111100 0111 122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhccccCCCCCCCCCCc-cch-hhh-hccccc-hhhhhh
Q 000718 836 KLGRYLFILSHIAMNQLVYIESCVCE-IRKQKIKKEKMIADDQNIHSNNNTNGDLPKD-TSI-NAE-LGLAAS-EDAKLD 910 (1334)
Q Consensus 836 ~LsqllFivGhVAlk~lV~lE~~~~~-lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~-~~~-~~E-lgl~t~-eD~~~d 910 (1334)
..+++.-++|.= ..=|+..+... +|-.+...+..--........ ....+.+ .+. ++| .|..|+ =|+...
T Consensus 588 ~warmc~ilg~~---F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~---~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~ 661 (1075)
T KOG2171|consen 588 FWARMCRILGDD---FAPFLPVVMPPLLKTARLDPDVALSDEEDEEEE---QDLDGWEVVELGDKENIGIRTSVLDEKET 661 (1075)
T ss_pred HHHHHHHHhchh---hHhHHHHHhHHHHHhhccCCcccCcCchhhhhc---cccccchhhccCCceeeeeeehhHHHHHH
Confidence 567777777763 23345555555 443332111000000000000 0000000 000 111 222222 234444
Q ss_pred hhHHHHHhhhccCCCCCCchhhhhhHHHHHHhc----CCcCCCCChHHHHHHHHHHHHHhhcCHHHHH-----------H
Q 000718 911 TLSEKAEKEIISGGSSQKNLIGHCASFLSKFCR----NFSLMNKYPELQASAMLALCRFMIIDADYCD-----------A 975 (1334)
Q Consensus 911 ~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~----~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~-----------~ 975 (1334)
+....++-.+. +-..|.|-++.+.. +-..| -+..+|.||..++..+++-=..-|. .
T Consensus 662 A~~~Lv~~a~~--------lk~~F~pYve~v~~l~v~~l~f~-fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~ 732 (1075)
T KOG2171|consen 662 ACEALGEYAKE--------LKEAFAPYVEQVVELMVPLLKFY-FHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEA 732 (1075)
T ss_pred HHHHHHHHHHh--------hhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 44444444333 33667777666544 22334 4678899998888777653332111 1
Q ss_pred hHHHHHHHHhcCCChhhH-------hh-----------------------------------------------------
Q 000718 976 NLQLLFTVVESSPSEIVR-------SN----------------------------------------------------- 995 (1334)
Q Consensus 976 ~l~ll~~~le~s~~~~vR-------~N----------------------------------------------------- 995 (1334)
-.|.++..+++-+++.|= .|
T Consensus 733 ~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~ 812 (1075)
T KOG2171|consen 733 IRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDL 812 (1075)
T ss_pred HHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHH
Confidence 112222222222211110 01
Q ss_pred ------HHHHhhhh----hhccCcc----cccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc---cccccchhH-HHHHH
Q 000718 996 ------CTIALGDL----AVRFPNL----LEPWTENMYARLKDPSMAVRKNAVLVLSHLILN---DMMKVKGYI-NEMAI 1057 (1334)
Q Consensus 996 ------~vi~lgDL----~~rfpnl----ve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~---dmiKvKg~l-~~~a~ 1057 (1334)
+.=..+|. ..-|-.- .+...|.+...+....+.-|.-++-++.-+|.. ++.+.+-.+ .-|..
T Consensus 813 ~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~ 892 (1075)
T KOG2171|consen 813 DEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLE 892 (1075)
T ss_pred hhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 11111121 1122222 333356666777777777799999999999864 566666665 67888
Q ss_pred HhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhcc---CCCCC-hhHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 000718 1058 RVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLC---NQNLK-TESFCNIMQLLIGFIKKDKQMEALVEKLCNR 1133 (1334)
Q Consensus 1058 ~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls---~~~~~-~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~R 1133 (1334)
++.|++|+||+-|-+=+--++.-++...-|..-..+..|. .+... .|.+.++.....+=|.| +|
T Consensus 893 ~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiak----------i~-- 960 (1075)
T KOG2171|consen 893 ALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAK----------IL-- 960 (1075)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHH----------HH--
Confidence 9999999999999987777877764442222222222222 11111 13333333333332222 22
Q ss_pred hhcccchHhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHhh
Q 000718 1134 FSGVTDIRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSK 1191 (1334)
Q Consensus 1134 f~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~k 1191 (1334)
-|+=+..| -++-+--+.-.+|.|.|+.-...+|..+..++.+-.
T Consensus 961 -------------~~~~~~i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~ 1004 (1075)
T KOG2171|consen 961 -------------LFNPNRIP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNH 1004 (1075)
T ss_pred -------------HhCCccCc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCC
Confidence 22223334 444455555555566666666667776666666544
No 35
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.01 E-value=0.14 Score=47.85 Aligned_cols=85 Identities=22% Similarity=0.274 Sum_probs=65.9
Q ss_pred HHHHHHh-cCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc
Q 000718 936 SFLSKFC-RNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW 1014 (1334)
Q Consensus 936 PlV~~iC-~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~ 1014 (1334)
|.+.+.+ .+ .++.+|..|+-+|+++- + .+-+|.|+..| +++++.||..++.+||.+.- +.-
T Consensus 2 ~~L~~~l~~~-----~~~~vr~~a~~~L~~~~--~----~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i~~------~~~ 63 (88)
T PF13646_consen 2 PALLQLLQND-----PDPQVRAEAARALGELG--D----PEAIPALIELL-KDEDPMVRRAAARALGRIGD------PEA 63 (88)
T ss_dssp HHHHHHHHTS-----SSHHHHHHHHHHHHCCT--H----HHHHHHHHHHH-TSSSHHHHHHHHHHHHCCHH------HHT
T ss_pred HHHHHHHhcC-----CCHHHHHHHHHHHHHcC--C----HhHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC------HHH
Confidence 4455555 43 67899999999999662 2 25689999999 78999999999999998852 445
Q ss_pred hHHHhhhcCC-CCHHHHHHHHHHHH
Q 000718 1015 TENMYARLKD-PSMAVRKNAVLVLS 1038 (1334)
Q Consensus 1015 t~~ly~~L~D-~~~~VR~~~l~vlt 1038 (1334)
.+.|-..|.| ++..||..|+..|.
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 6777777766 56778999988763
No 36
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=21 Score=48.10 Aligned_cols=247 Identities=15% Similarity=0.166 Sum_probs=155.5
Q ss_pred HHHHhcccccccc-----CCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhc---cchh-------h
Q 000718 183 IANSLEINLPLLF-----GSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKY---HYIE-------Q 247 (1334)
Q Consensus 183 l~~~L~l~l~~Lw-----~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y---~h~~-------~ 247 (1334)
+++.|+-.||.|. .|..+++.|-.++--.+--++++ +.+|..|++-|-+++..- ..+. .
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~------~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~ 563 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR------PELRETICNSLRMLVEQNKPSSDAAENKEVLSN 563 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc------hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhh
Confidence 5555555555553 46778888988887777777654 478889998888888773 2211 1
Q ss_pred hHHHHHH-HHhhcccch--H-HHHHHH----HHHH-H--HcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHH
Q 000718 248 SCASIMH-LIHKYDFVV--V-HMADAV----AGAE-K--KYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELA 316 (1334)
Q Consensus 248 ~~~~Iiq-lL~~~ehl~--~-~~Ae~l----~~l~-~--~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~La 316 (1334)
.....++ +..+|.--+ . +..+.. .... . +-....++..+..-++...... .++..+.-...+|-.+.
T Consensus 564 ~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~--~~s~~~~~~~slLdl~~ 641 (1176)
T KOG1248|consen 564 DAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDL--DESVASFKTLSLLDLLI 641 (1176)
T ss_pred hhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccc--hhhhhhHHHHHHHHHHH
Confidence 1222222 333333222 1 111111 1111 1 1123456666666666554321 35566666777888888
Q ss_pred hhhhhHHHhhHhHHH---HHhCCC-chhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchh
Q 000718 317 DRLPKLISTNIGVLI---LHFGGE-SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYT 392 (1334)
Q Consensus 317 e~~P~lvl~~is~L~---~~Ld~e-sY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yV 392 (1334)
...|..--.+++.+. +.+++. +-.++.=--.+++++... ... +....++ .+.+++.|..=+.++..++
T Consensus 642 ~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~----~s~-~~~~~q~---i~~I~n~L~ds~qs~~~~~ 713 (1176)
T KOG1248|consen 642 ALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSS----PSG-EGLVEQR---IDDIFNSLLDSFQSSSSPA 713 (1176)
T ss_pred hhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcC----Cch-hhHHHHH---HHHHHHHHHHHHhccchHH
Confidence 887777666666554 445543 667777677777776533 111 1122222 6889999999999999999
Q ss_pred hHHHHHHHHHHHhcCC-cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000718 393 RSRVLQVWAELCEEHS-VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 393 RskvLQ~~~~L~e~~~-iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1334)
|...+.+|..|.+... --.....+.+..++=.+.|-+.--|++|.+||..+..
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence 9999999999999642 3333334566666666799999999999999999875
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=0.48 Score=60.39 Aligned_cols=205 Identities=15% Similarity=0.190 Sum_probs=121.5
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE 1012 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve 1012 (1334)
...|-|.++|.+ ++|.+|.=|++|+.||---.++.-+-.++-+.+.| .+.++.|---.+-.+-+||-+-|..++
T Consensus 142 dlapeVe~Ll~~-----~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~ 215 (866)
T KOG1062|consen 142 DLAPEVERLLQH-----RDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALS 215 (866)
T ss_pred HhhHHHHHHHhC-----CCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHH
Confidence 468999999998 67889999999999999999888888888877777 666677777777777777777666666
Q ss_pred cc---hHHHhhhcCC---------------CCHHHHHHHHHHHHHHHHcc------------------------------
Q 000718 1013 PW---TENMYARLKD---------------PSMAVRKNAVLVLSHLILND------------------------------ 1044 (1334)
Q Consensus 1013 ~~---t~~ly~~L~D---------------~~~~VR~~~l~vlthLIl~d------------------------------ 1044 (1334)
-| ++.+...|++ ++|..+-..|.+|.=|=.+|
T Consensus 216 ~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILY 295 (866)
T KOG1062|consen 216 YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILY 295 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHH
Confidence 55 4445554444 34555555554444332222
Q ss_pred -------------ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCC-----------
Q 000718 1045 -------------MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQN----------- 1100 (1334)
Q Consensus 1045 -------------miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~----------- 1100 (1334)
=++|.| +--+++-|-.+|-.|+-+|-.-+.-+-+-+|+++-.|=+-|+-=|.|++
T Consensus 296 E~V~TI~~I~~~~~Lrvla-iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs 374 (866)
T KOG1062|consen 296 ECVRTIMDIRSNSGLRVLA-INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELS 374 (866)
T ss_pred HHHHHHHhccCCchHHHHH-HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 111111 0112333333333333333333333333344555555555555555541
Q ss_pred ---CChhHHHHHHHHHHhhhhh--hhhHHHHHHHHHhhhhcccchHhHH
Q 000718 1101 ---LKTESFCNIMQLLIGFIKK--DKQMEALVEKLCNRFSGVTDIRQWE 1144 (1334)
Q Consensus 1101 ---~~~~~f~~i~kfLl~~i~K--dkq~e~LveKLc~Rf~~~~~~rqwr 1144 (1334)
+++...+.|++-|+.|+.+ +--...++-|+|.=-..-...++|.
T Consensus 375 ~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~ 423 (866)
T KOG1062|consen 375 YALVNESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH 423 (866)
T ss_pred HHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 2344456688888888863 2235667777665444444456664
No 38
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.63 E-value=1.8 Score=54.90 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=79.6
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCC--------------CCChhHHHHHHHHHHhhhhh
Q 000718 1054 EMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQ--------------NLKTESFCNIMQLLIGFIKK 1119 (1334)
Q Consensus 1054 ~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~--------------~~~~~~f~~i~kfLl~~i~K 1119 (1334)
.+-..++|.||..+-++-+.|.-+++++|.++--+--=|+--|+|. -++++....|.|-|+.|+.+
T Consensus 303 KLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ 382 (877)
T KOG1059|consen 303 KLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEK 382 (877)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 4556789999999999999999999999777655544444445653 25888999999999999976
Q ss_pred hhhHHHHHHHHHhhhhcc--------cchHhHHHHHH-HHhccCCChhHHHHHHHhHHH
Q 000718 1120 DKQMEALVEKLCNRFSGV--------TDIRQWEYISY-CLSQLAFTEKGMKKLIESFKT 1169 (1334)
Q Consensus 1120 dkq~e~LveKLc~Rf~~~--------~~~rqwrdiaf-cLslL~~~ek~ikKL~e~~~~ 1169 (1334)
..- ...-+++..|.-.. -+...|..-.+ =|..||.++.| .++-+.+.-
T Consensus 383 ae~-t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G-~~I~eQi~D 439 (877)
T KOG1059|consen 383 AEG-TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHG-SLIAEQIID 439 (877)
T ss_pred ccc-hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchh-hHHHHHHHH
Confidence 533 34444454444332 36678887555 47888887776 344454443
No 39
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.60 E-value=36 Score=49.28 Aligned_cols=245 Identities=11% Similarity=0.038 Sum_probs=151.0
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHH-----HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc
Q 000718 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCD-----ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1334)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~-----~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpn 1009 (1334)
.|.+++.-++ .++.+|..|+-+|+-+..-+.+-+. .-+|.|+.+| .++++.+|.+++-+++-++.--+|
T Consensus 448 Ip~LV~LL~s-----~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL-~s~~~~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 448 VQLLISLLGL-----SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLL-ETGSQKAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HHHHHHHHcC-----CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCcHH
Confidence 5666666666 4578999999999888665554442 4589999999 578899999999999999983222
Q ss_pred ---ccc--cchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhc-cCCc
Q 000718 1010 ---LLE--PWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSK-KGNN 1083 (1334)
Q Consensus 1010 ---lve--~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~-K~~n 1083 (1334)
+|. .-.+.|...|++.++.+|+.++-.|.+|+..+-- .++..+.-+|..+++.+...+-.-+..+.. -+.+
T Consensus 522 ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~---~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~ 598 (2102)
T PLN03200 522 IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA---ATISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch---hHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchh
Confidence 342 2366788899999999999999999999987643 344555555666776666665443322211 1101
Q ss_pred -------hhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhh-hhHHH-----HHHHHHhhhhcccchHhHHHHHHHH
Q 000718 1084 -------PIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKD-KQMEA-----LVEKLCNRFSGVTDIRQWEYISYCL 1150 (1334)
Q Consensus 1084 -------~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kd-kq~e~-----LveKLc~Rf~~~~~~rqwrdiafcL 1150 (1334)
.-.+.+|-++.-|.++ +++..+.-..-|..+..-. .+... .+.-|+.=+. ..+...-++.|+||
T Consensus 599 d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs-s~~~~v~keAA~AL 675 (2102)
T PLN03200 599 DLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT-NNTEAVATQSARAL 675 (2102)
T ss_pred HHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh-cCChHHHHHHHHHH
Confidence 0124455555555433 3444555444444444321 22222 2334444443 34555677899998
Q ss_pred hccC--CChhHHHHHHH--hHHHHHHhhC--chHHHHHHHHHHHHhh
Q 000718 1151 SQLA--FTEKGMKKLIE--SFKTYEHALS--EDSVMDNFRNIINKSK 1191 (1334)
Q Consensus 1151 slL~--~~ek~ikKL~e--~~~~y~dkL~--d~~V~~~F~~Ii~k~k 1191 (1334)
+.|. .++.-..++++ ..|-.=+.|. +..|.+.=...+...=
T Consensus 676 ~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl 722 (2102)
T PLN03200 676 AALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLL 722 (2102)
T ss_pred HHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 8877 35444445554 3555555554 3455555555544443
No 40
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=0.33 Score=60.52 Aligned_cols=143 Identities=20% Similarity=0.222 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHH---------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC----cccccchHHHh
Q 000718 953 ELQASAMLALCRFMIIDADYCDA---------NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP----NLLEPWTENMY 1019 (1334)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~---------~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfp----nlve~~t~~ly 1019 (1334)
.-+.-|+-+|.|.|-=|+++-+. -+|-|+... ++++|.||+-++-++.-+..--| +-+|.|+..+|
T Consensus 143 n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lF 221 (885)
T KOG2023|consen 143 NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILF 221 (885)
T ss_pred cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHH
Confidence 45668999999999888888765 578888888 66699999999888776654443 34789999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHccccccchhH----HHHHHHhcCCChhHHHHHHHHHHHHhccC--CchhhhhhhHHH
Q 000718 1020 ARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI----NEMAIRVEDEDQRISNLAKLFFHELSKKG--NNPIYNLLPDIL 1093 (1334)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l----~~~a~~l~D~d~~I~~~a~~ff~eL~~K~--~n~iyn~~pdii 1093 (1334)
+.=.|++|.|||+--.-|+||+-=-+=|.-.|+ -.|.....|.|+.|+==|=-|..-++... +..+--++|++|
T Consensus 222 alanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kli 301 (885)
T KOG2023|consen 222 ALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLI 301 (885)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999876666665555 47899999999999999999999998862 255667777777
Q ss_pred hhc
Q 000718 1094 GKL 1096 (1334)
Q Consensus 1094 s~L 1096 (1334)
--|
T Consensus 302 PvL 304 (885)
T KOG2023|consen 302 PVL 304 (885)
T ss_pred HHH
Confidence 665
No 41
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.35 E-value=0.035 Score=47.90 Aligned_cols=51 Identities=35% Similarity=0.487 Sum_probs=37.5
Q ss_pred hhhHhhHHHHhhhhhhccCcccccchH----HHhhhcCCCCHHHHHHHHHHHHHH
Q 000718 990 EIVRSNCTIALGDLAVRFPNLLEPWTE----NMYARLKDPSMAVRKNAVLVLSHL 1040 (1334)
Q Consensus 990 ~~vR~N~vi~lgDL~~rfpnlve~~t~----~ly~~L~D~~~~VR~~~l~vlthL 1040 (1334)
|.||.+++-+||-++...|..+.|+.+ .+..+|.|+++.||.+|.-.|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 467888888888888788888877744 445577788888888887776543
No 42
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.05 E-value=0.35 Score=65.06 Aligned_cols=154 Identities=18% Similarity=0.251 Sum_probs=121.3
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH-HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhc
Q 000718 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY-CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVR 1006 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~-c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~r 1006 (1334)
.++...|-|.+..|.+--+. +-+.||+-|+-||+-+--+++.. |..-++.=+.-=-...+..||.-++=-+|=+...
T Consensus 808 r~f~~sfD~yLk~Il~~l~e--~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~ 885 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGE--NAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS 885 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc
Confidence 44556666666666655443 45789999999999999998865 5555544332212445578999999999999999
Q ss_pred cCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHH--HccccccchhHHHHHHHhcCCChhHHHHHHHHHHH-HhccCCc
Q 000718 1007 FPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLI--LNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHE-LSKKGNN 1083 (1334)
Q Consensus 1007 fpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLI--l~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~e-L~~K~~n 1083 (1334)
+|.+++.|-+.|-.+..|+...|||.++.++--.- ..|+.|.-.-.++|.+-+.|+...|++|+..-|.+ +-.+-|+
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~ 965 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPE 965 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999886543 57888888888999999999999999999885554 5555444
No 43
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.84 E-value=1.7 Score=53.86 Aligned_cols=107 Identities=21% Similarity=0.138 Sum_probs=81.7
Q ss_pred HHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 000718 322 LISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWA 401 (1334)
Q Consensus 322 lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~ 401 (1334)
+|-+-+-.++..+++.--++|.-++++++-++-.+- +.++ .. -+.++..|.+|++|--+-||--|+.++.
T Consensus 88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~---eIDe---~l----~N~L~ekl~~R~~DRE~~VR~eAv~~L~ 157 (885)
T COG5218 88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVR---EIDE---VL----ANGLLEKLSERLFDREKAVRREAVKVLC 157 (885)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcc---hHHH---HH----HHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 455556678888999999999999999998763221 1111 12 6889999999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHH
Q 000718 402 ELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLL 440 (1334)
Q Consensus 402 ~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL 440 (1334)
++.+..-=|..+...++...++ .|.|+-||+.|+--|
T Consensus 158 ~~Qe~~~neen~~~n~l~~~vq--nDPS~EVRr~allni 194 (885)
T COG5218 158 YYQEMELNEENRIVNLLKDIVQ--NDPSDEVRRLALLNI 194 (885)
T ss_pred HHHhccCChHHHHHHHHHHHHh--cCcHHHHHHHHHHHe
Confidence 9998766676665444444443 799999999997544
No 44
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=1.8 Score=55.04 Aligned_cols=251 Identities=16% Similarity=0.180 Sum_probs=163.1
Q ss_pred hhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHh---------
Q 000718 930 LIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIAL--------- 1000 (1334)
Q Consensus 930 LL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~l--------- 1000 (1334)
||..+.|.|...--+ +++.+|+-|++|+.-.-.++...-.+--.++-..|.+-.||..+-|+.+.|
T Consensus 131 Llepl~p~IracleH-----rhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 131 LLEPLMPSIRACLEH-----RHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred HhhhhHHHHHHHHhC-----cchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcCHHHHH
Confidence 445578877764444 678899999999987777655444444445556666666666666665543
Q ss_pred -------------------------hhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHH
Q 000718 1001 -------------------------GDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEM 1055 (1334)
Q Consensus 1001 -------------------------gDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~ 1055 (1334)
-+-|.+-|+.=-.|+.-+|..|.-.++.|+.-|-+.|..|- ++=--+|.--..+
T Consensus 206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~ 284 (948)
T KOG1058|consen 206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTY 284 (948)
T ss_pred HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHH
Confidence 34455557777788889999999999999888777776553 3333344444445
Q ss_pred HHHhcCC-ChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 000718 1056 AIRVEDE-DQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRF 1134 (1334)
Q Consensus 1056 a~~l~D~-d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf 1134 (1334)
..|++++ |-++.-+.---..+|...+-..+--+.-|++.-|+.|++ +-.+..+.+.++.+. .+..+.++.=|-.+|
T Consensus 285 i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dl--dvr~Ktldi~ldLvs-srNvediv~~Lkke~ 361 (948)
T KOG1058|consen 285 IDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDL--DVRSKTLDIALDLVS-SRNVEDIVQFLKKEV 361 (948)
T ss_pred HHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccc--cHHHHHHHHHHhhhh-hccHHHHHHHHHHHH
Confidence 5555543 333444444445566655534566667788888886543 345667788888885 478999999999999
Q ss_pred hcccch--------Hh--HHHHHHHHhccCC-ChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHh
Q 000718 1135 SGVTDI--------RQ--WEYISYCLSQLAF-TEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKS 1190 (1334)
Q Consensus 1135 ~~~~~~--------rq--wrdiafcLslL~~-~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~ 1190 (1334)
.++.++ || -+-|.+|=..+|- .+..+.-|+|.+.....+-.. .|...-+++++|.
T Consensus 362 ~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas-~vl~FvrE~iek~ 427 (948)
T KOG1058|consen 362 MKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAAS-DVLMFVREAIEKF 427 (948)
T ss_pred HhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHH-HHHHHHHHHHHhC
Confidence 988655 22 3457888888886 666677777666554444332 3555566666664
No 45
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.63 E-value=0.43 Score=63.95 Aligned_cols=103 Identities=22% Similarity=0.222 Sum_probs=59.3
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.+|.+|.+|+.+|+++-. ..-+|.|...| ..+++.||.-++-+|+-+.--.|. .+.+-..|.|+|+.|
T Consensus 633 ~d~~VR~~Av~~L~~~~~------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~-----~~~L~~~L~~~d~~V 700 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTP------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP-----APALRDHLGSPDPVV 700 (897)
T ss_pred CCHHHHHHHHHHHhhhcc------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc-----hHHHHHHhcCCCHHH
Confidence 567777777777777642 33466666666 666667777776666655321111 234445566666677
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHH
Q 000718 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAK 1071 (1334)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~ 1071 (1334)
|..++..|..+-. |...-+...|.|+|+.+|.-|-
T Consensus 701 R~~A~~aL~~~~~-------~~~~~l~~~L~D~d~~VR~~Av 735 (897)
T PRK13800 701 RAAALDVLRALRA-------GDAALFAAALGDPDHRVRIEAV 735 (897)
T ss_pred HHHHHHHHHhhcc-------CCHHHHHHHhcCCCHHHHHHHH
Confidence 7766666665431 2222344556666666665553
No 46
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.58 E-value=4.2 Score=55.76 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhhcCCCccc------------cCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHH
Q 000718 281 SLATYLIREIGRTNPKAYV------------KDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGV 348 (1334)
Q Consensus 281 ~l~~~ilrEI~~~~~~~~~------------~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ 348 (1334)
.|+..+++..+..-...++ +-++-...+-..+-+|-.-+|.+++.-+..|-.-|-++.-..|--+++.
T Consensus 203 ~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~l 282 (1266)
T KOG1525|consen 203 KLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKL 282 (1266)
T ss_pred HHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5777888887776544332 2344556677888899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHH-----------------HHHHhcC----
Q 000718 349 LGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVW-----------------AELCEEH---- 407 (1334)
Q Consensus 349 ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~-----------------~~L~e~~---- 407 (1334)
+|.|+...... .. ++ -+.++..-+-|+.|.+.-||-+.+|.- ..|++..
T Consensus 283 vg~~~~~~~~~--l~----~~----~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~ 352 (1266)
T KOG1525|consen 283 VGRMFSDKDSQ--LS----ET----YDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDED 352 (1266)
T ss_pred HHHHHhcchhh--hc----cc----chHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChh
Confidence 99998653221 11 12 456677777889999998886665543 3343211
Q ss_pred ----------Ccch-----hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000718 408 ----------SVSI-----GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1334)
Q Consensus 408 ----------~iP~-----~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1334)
..+. ..-+.++..+..|+.||--.||+.||+=|+.+..+
T Consensus 353 ~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 353 VRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 12224788999999999999999999999998764
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=0.53 Score=59.37 Aligned_cols=71 Identities=25% Similarity=0.425 Sum_probs=49.9
Q ss_pred hcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHH
Q 000718 967 IIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLS 1038 (1334)
Q Consensus 967 ~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlt 1038 (1334)
.+..+.+.+-.+-+||+| +|.-|-||--+|..|--++.+||.-+-|..|++-..|-||||.|.-.|+.|+-
T Consensus 136 fvTpdLARDLa~Dv~tLL-~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VIC 206 (877)
T KOG1059|consen 136 IVTPDLARDLADDVFTLL-NSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVIC 206 (877)
T ss_pred ccCchhhHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHH
Confidence 356677777777777777 66667777777777777777777777777777766666666666665555543
No 48
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.58 E-value=6.4 Score=49.79 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=48.2
Q ss_pred HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch
Q 000718 971 DYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG 1050 (1334)
Q Consensus 971 ~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg 1050 (1334)
+..++-+..++.++| ..+..||.++|=+|.++|..-|..|-.-++-|-..|.-+++..+...=..|..|+-.| +||
T Consensus 55 ~l~~~Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d---~k~ 130 (556)
T PF05918_consen 55 DLQEEAINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD---PKG 130 (556)
T ss_dssp GGHHHHHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH----HHH
T ss_pred hhHHHHHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC---cHH
Confidence 333444444444443 3455666666666666666666666666666666666555444433333333333322 566
Q ss_pred hHHHHHHHhc---CCChhHHHHHHHHHHH
Q 000718 1051 YINEMAIRVE---DEDQRISNLAKLFFHE 1076 (1334)
Q Consensus 1051 ~l~~~a~~l~---D~d~~I~~~a~~ff~e 1076 (1334)
.|.-+..-+. ..|+.||.-+-.|..+
T Consensus 131 tL~~lf~~i~~~~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 131 TLTGLFSQIESSKSGDEQVRERALKFLRE 159 (556)
T ss_dssp HHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence 6654444444 4555666666666654
No 49
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=0.91 Score=56.90 Aligned_cols=83 Identities=16% Similarity=0.352 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000718 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1334)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~ 1032 (1334)
.+|.||+-+||++.+-|+.|..+.+.+|+. +++|+...||-.
T Consensus 388 EVR~AAV~Sl~~La~ssP~FA~~aldfLvD--------------------------------------MfNDE~~~VRL~ 429 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGFAVRALDFLVD--------------------------------------MFNDEIEVVRLK 429 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHH--------------------------------------HhccHHHHHHHH
Confidence 699999999999999888888877766654 456777778888
Q ss_pred HHHHHHHHHHccccccc-hhHHHHHHHhcCCChhHHHHHHHHHH
Q 000718 1033 AVLVLSHLILNDMMKVK-GYINEMAIRVEDEDQRISNLAKLFFH 1075 (1334)
Q Consensus 1033 ~l~vlthLIl~dmiKvK-g~l~~~a~~l~D~d~~I~~~a~~ff~ 1075 (1334)
|+-.|||++-+ ++++ .|+-.|..||+|..+.||.-.+..+.
T Consensus 430 ai~aL~~Is~~--l~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 430 AIFALTMISVH--LAIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHH--heecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888887777 4443 35567777888888888777766554
No 50
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.96 E-value=1.3 Score=43.12 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000718 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 377 lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
-++...+-+.|--+-||+++|..+.+|++.+..|......++.+...-|+|.-+.|==|||+.|+.|...+|
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence 355566677899999999999999999998876667778999999999999999999999999999999888
No 51
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=90.84 E-value=23 Score=45.56 Aligned_cols=169 Identities=12% Similarity=0.184 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCch-----hHHHHHHHHhhcCCCc--cccCcccc---------------chHHHHHHHHHhhhhh
Q 000718 264 VHMADAVAGAEKKYADGS-----LATYLIREIGRTNPKA--YVKDTVGA---------------ENIGRFLVELADRLPK 321 (1334)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~-----l~~~ilrEI~~~~~~~--~~~D~~g~---------------Kn~s~FL~~Lae~~P~ 321 (1334)
.+--|....+..||+++. ++-.+++.+|.++.-+ |.++..-| ||+.....--.+.+-+
T Consensus 632 yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K 711 (1172)
T KOG0213|consen 632 YYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK 711 (1172)
T ss_pred HhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH
Confidence 344477788899999885 4445555666554332 12222222 2222222111222222
Q ss_pred HH-HhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 000718 322 LI-STNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVW 400 (1334)
Q Consensus 322 lv-l~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~ 400 (1334)
+- -+-++-++.-|-.|+-.-|.-+.+.+..++..+ -..+.++...+. -.|+++..++|-..+.+ | -|.+|
T Consensus 712 vG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~l-g~~diderleE~---lidgil~Afqeqtt~d~--v---ml~gf 782 (1172)
T KOG0213|consen 712 VGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRL-GAADIDERLEER---LIDGILYAFQEQTTEDS--V---MLLGF 782 (1172)
T ss_pred hCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhcc-ccccccHHHHHH---HHHHHHHHHHhcccchh--h---hhhhH
Confidence 22 244667777788888889999999999987543 233343433332 27888888888776654 2 34444
Q ss_pred HHHHh---cCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000718 401 AELCE---EHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 401 ~~L~e---~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1334)
.-++. .++.| +..++..-..-||..||+.||.+|..|++.+
T Consensus 783 g~V~~~lg~r~kp--ylpqi~stiL~rLnnksa~vRqqaadlis~l 826 (1172)
T KOG0213|consen 783 GTVVNALGGRVKP--YLPQICSTILWRLNNKSAKVRQQAADLISSL 826 (1172)
T ss_pred HHHHHHHhhcccc--chHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 44444 34556 5678999999999999999999999999887
No 52
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.73 E-value=4.8 Score=51.25 Aligned_cols=109 Identities=19% Similarity=0.161 Sum_probs=78.8
Q ss_pred HHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 000718 322 LISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWA 401 (1334)
Q Consensus 322 lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~ 401 (1334)
++-.-+..|+...++..-++|--|+++++-++-.. .+.++ .. -+.+...|..|+.|--|.||--|+-++.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~---~eidd---~v----fn~l~e~l~~Rl~Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDEN---AEIDD---DV----FNKLNEKLLIRLKDREPNVRIQAVLALS 151 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccc---cccCH---HH----HHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 56677788899999999999999999998886311 11111 12 5788889999999999999999999999
Q ss_pred HHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000718 402 ELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1334)
Q Consensus 402 ~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1334)
++.+...=|......++...++ .|.|+-|||+|+.-|..
T Consensus 152 rlQ~d~~dee~~v~n~l~~liq--nDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLKDLIQ--NDPSDEVRRAALSNISV 190 (892)
T ss_pred HHhcCCCCCcccHHHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence 9996322222111222222232 79999999999876543
No 53
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.13 E-value=22 Score=43.21 Aligned_cols=207 Identities=14% Similarity=0.249 Sum_probs=125.6
Q ss_pred hhHHHHHHHHHHHHHhhccchh-----hhHHHHHHHHh------hcccchHHHHHHHHHHHHH------cCCchhHHHHH
Q 000718 225 ADTKDALCRIIGACATKYHYIE-----QSCASIMHLIH------KYDFVVVHMADAVAGAEKK------YADGSLATYLI 287 (1334)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~-----~~~~~IiqlL~------~~ehl~~~~Ae~l~~l~~~------~~~~~l~~~il 287 (1334)
..+|-.+++++..-..+|+..+ .+...+.++|. .|+.++...-.++..+++. |..+.....|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 4667788999988899997544 46677777773 5677776666676655432 12222223333
Q ss_pred HHH--h------------hcCCCccc------cCc-cccchHHHHHHHHHhhhhhHHHhhHhHHHH-HhC------CCch
Q 000718 288 REI--G------------RTNPKAYV------KDT-VGAENIGRFLVELADRLPKLISTNIGVLIL-HFG------GESY 339 (1334)
Q Consensus 288 rEI--~------------~~~~~~~~------~D~-~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~-~Ld------~esY 339 (1334)
..| . +-+|.+|. .|. +.-++-..||..|++.-++.+.+.++..++ +|. +..+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH
Confidence 322 0 11233322 233 344677789999999999999888765444 454 4567
Q ss_pred hHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC-------CCCchhhHHHHHHHHHHHhcCCcchh
Q 000718 340 KIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR-------DVSAYTRSRVLQVWAELCEEHSVSIG 412 (1334)
Q Consensus 340 ~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~-------D~n~yVRskvLQ~~~~L~e~~~iP~~ 412 (1334)
.-..+.+-.+|.+-.+..+...+-..... .-+...|| ..++. ..+|+.|+.|+..+..--.. +|..
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~--~v~v~~Ff---~~~v~peL~~~~~~~piLka~aik~~~~Fr~~--l~~~ 342 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNE--LVDVVDFF---SQHVLPELQPDVNSHPILKADAIKFLYTFRNQ--LPKE 342 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-T--TS-HHHHH---HHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGG--S-HH
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccc--cccHHHHH---HHHhHHHhcccCCCCcchHHHHHHHHHHHHhh--CCHH
Confidence 77778888887776554332221111000 00134443 33333 67889999999987766554 8988
Q ss_pred hHHHHHHHHHhhccCCchhHHHHHHH
Q 000718 413 LWNEVAEVAAGRLEDKSAIVRKSALN 438 (1334)
Q Consensus 413 ~~~~v~~~av~RL~DKSs~VRK~Aiq 438 (1334)
....++..++.-|.+.+..|+-.|-.
T Consensus 343 ~l~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 343 QLLQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhhh
Confidence 99999999999999999999987754
No 54
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.13 E-value=5.1 Score=53.49 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=75.2
Q ss_pred CChhhHhhHHHHhhhhhhccCccc--ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHcccccc---------chhHHHHH
Q 000718 988 PSEIVRSNCTIALGDLAVRFPNLL--EPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV---------KGYINEMA 1056 (1334)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpnlv--e~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv---------Kg~l~~~a 1056 (1334)
-+|.||+=+|-.||+.+.-||... +-|..++==.|+|.+..||+.|+.+|-||+-++=.+. |..|.+|+
T Consensus 299 V~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMa 378 (1048)
T KOG2011|consen 299 VDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMA 378 (1048)
T ss_pred CchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999865 7889999999999999999999999999999876654 44455566
Q ss_pred HHhcCCChhHHHHHHHHHHHHhcc
Q 000718 1057 IRVEDEDQRISNLAKLFFHELSKK 1080 (1334)
Q Consensus 1057 ~~l~D~d~~I~~~a~~ff~eL~~K 1080 (1334)
..|-+..|+..+..-...+...
T Consensus 379 --drd~~~~Vrav~L~~~~~~~~~ 400 (1048)
T KOG2011|consen 379 --DRDRNVSVRAVGLVLCLLLSSS 400 (1048)
T ss_pred --hhhcchhHHHHHHHHHHHHhcc
Confidence 7888999998887755544333
No 55
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.90 E-value=3.7 Score=48.25 Aligned_cols=73 Identities=12% Similarity=0.217 Sum_probs=46.9
Q ss_pred HHHHHHHHhcC-CChhhHhhHHHHhhhhhhccCccc------------ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000718 977 LQLLFTVVESS-PSEIVRSNCTIALGDLAVRFPNLL------------EPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1334)
Q Consensus 977 l~ll~~~le~s-~~~~vR~N~vi~lgDL~~rfpnlv------------e~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1334)
..+|+++|++. +++.+.-+++..++||+---|... +||.+.+. .|.-+|..++..|.-+||-|+-.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHc
Confidence 34444666666 778888888888888887666443 27888887 88888999999999999999887
Q ss_pred cccccch
Q 000718 1044 DMMKVKG 1050 (1334)
Q Consensus 1044 dmiKvKg 1050 (1334)
+=-+-.+
T Consensus 136 ~~~~~~~ 142 (312)
T PF03224_consen 136 GPKRSEK 142 (312)
T ss_dssp TTT--HH
T ss_pred CCccccc
Confidence 6655554
No 56
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.90 E-value=1.4 Score=55.63 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1334)
-+.+|-.|+.-.--..--||.+|+|++..|.++ .-||-.-++.+.+....||.||-+.||..|+.-|+.+
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl 153 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL 153 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 355555555333334456999999999999995 6799999999999999999999999999999998886
No 57
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=89.89 E-value=0.29 Score=40.62 Aligned_cols=26 Identities=38% Similarity=0.561 Sum_probs=23.0
Q ss_pred HHHHHHHHhhccCCchhHHHHHHHHH
Q 000718 415 NEVAEVAAGRLEDKSAIVRKSALNLL 440 (1334)
Q Consensus 415 ~~v~~~av~RL~DKSs~VRK~AiqLL 440 (1334)
..+.....+||.|.|+.||++|++||
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 48888899999999999999999875
No 58
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=89.38 E-value=3.4 Score=51.25 Aligned_cols=128 Identities=22% Similarity=0.273 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000718 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1334)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~ 1032 (1334)
....+++-+++..|--.++-=+.-|.-|-+..|-++.+.|---|+=.||-=.=|-|+= -.|..|+|.|+-=++..||--
T Consensus 428 eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P-~~yvrhIyNR~iLEN~ivRsa 506 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTP-GKYVRHIYNRLILENNIVRSA 506 (898)
T ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCc-chHHHHHHHHHHHhhhHHHHH
Confidence 4455666666666666655556666666666777777766555555555554444431 358999999999999999999
Q ss_pred HHHHHHHHHHc--cccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000718 1033 AVLVLSHLILN--DMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1033 ~l~vlthLIl~--dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1334)
|+.-||..-+| |-+-......-|-+|+.|.|.+||+-|-.....+-.++
T Consensus 507 Av~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 507 AVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred HHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence 99999986655 55555566678899999999999999998777666554
No 59
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=88.74 E-value=1.5 Score=44.85 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS 408 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~ 408 (1334)
-..++|.|..|+.|.++||..|||+++-.||..+.
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~ 70 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN 70 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999984
No 60
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.57 E-value=40 Score=45.69 Aligned_cols=173 Identities=12% Similarity=0.107 Sum_probs=121.8
Q ss_pred hHHHHHHHHh--hcccchHHHHHHHHHHHHHcCCc--hhHHHHHHHHh--hcCCCccccCccccchHHHHHHHHHhhhhh
Q 000718 248 SCASIMHLIH--KYDFVVVHMADAVAGAEKKYADG--SLATYLIREIG--RTNPKAYVKDTVGAENIGRFLVELADRLPK 321 (1334)
Q Consensus 248 ~~~~IiqlL~--~~ehl~~~~Ae~l~~l~~~~~~~--~l~~~ilrEI~--~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~ 321 (1334)
+-..|++++- +++..+.-++|.|..+ ++++.. +-..++|-+|+ +....+ .+|. .+-++..||..+++-
T Consensus 720 ~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~-g~e~-~~~~lnefl~~Isag--- 793 (1176)
T KOG1248|consen 720 CLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDD-GNEP-ASAILNEFLSIISAG--- 793 (1176)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcc-cccc-hHHHHHHHHHHHHhh---
Confidence 4456666665 3344456778888777 777653 57778999998 433222 2222 345666666555544
Q ss_pred HHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 000718 322 LISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWA 401 (1334)
Q Consensus 322 lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~ 401 (1334)
|-+++..++++-+-+++.++.+.... +++ .. -..+++.+.-=+---++-+|+.|+-.+.
T Consensus 794 ------------l~gd~~~~~as~Ivai~~il~e~~~~--ld~---~~----l~~li~~V~~~L~s~sreI~kaAI~fik 852 (1176)
T KOG1248|consen 794 ------------LVGDSTRVVASDIVAITHILQEFKNI--LDD---ET----LEKLISMVCLYLASNSREIAKAAIGFIK 852 (1176)
T ss_pred ------------hcccHHHHHHHHHHHHHHHHHHHhcc--ccH---HH----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88999999999777788877554221 212 12 5678888888888899999999999999
Q ss_pred HHHhcCCcch--hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhC
Q 000718 402 ELCEEHSVSI--GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 402 ~L~e~~~iP~--~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~n 447 (1334)
.+|-.--.++ .+...++.....=+.|.+..||++.-+||.+|+..-
T Consensus 853 vlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 853 VLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred HHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 9888533332 344468888888899999999999999999999953
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=1.1e+02 Score=41.52 Aligned_cols=236 Identities=14% Similarity=0.090 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHH
Q 000718 176 RGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHL 255 (1334)
Q Consensus 176 r~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~Iiql 255 (1334)
-..+++.+..++...-.. - -.+++-+...+..+..|.+ .+.++|..+..+|..+++. +. .....
T Consensus 223 a~~~l~~l~El~e~~pk~------l-~~~l~~ii~~~l~Ia~n~~--l~~~~R~~ALe~ivs~~e~---Ap----~~~k~ 286 (1075)
T KOG2171|consen 223 AKSALEALIELLESEPKL------L-RPHLSQIIQFSLEIAKNKE--LENSIRHLALEFLVSLSEY---AP----AMCKK 286 (1075)
T ss_pred HHHHHHHHHHHHhhchHH------H-HHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHh---hH----HHhhh
Confidence 456677777766654211 1 2344555566777766665 5678888888888877765 11 11111
Q ss_pred HhhcccchHHHHH-HHHHHHHHcCCchhHHHHHHHHhhcCCCccccC-ccccchHHHHHHHHHhhhh-hHHH-hhHhHHH
Q 000718 256 IHKYDFVVVHMAD-AVAGAEKKYADGSLATYLIREIGRTNPKAYVKD-TVGAENIGRFLVELADRLP-KLIS-TNIGVLI 331 (1334)
Q Consensus 256 L~~~ehl~~~~Ae-~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D-~~g~Kn~s~FL~~Lae~~P-~lvl-~~is~L~ 331 (1334)
.. -+..++.. ++..+.+.-++ .|-.+-+--| ..| .+....--.-|-.||-..| +.|+ +-+..+-
T Consensus 287 ~~---~~~~~lv~~~l~~mte~~~D--------~ew~~~d~~d-ed~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~ 354 (1075)
T KOG2171|consen 287 LA---LLGHTLVPVLLAMMTEEEDD--------DEWSNEDDLD-EDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALE 354 (1075)
T ss_pred ch---hhhccHHHHHHHhcCCcccc--------hhhccccccc-cccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHH
Confidence 11 11112222 22222222222 1111111111 123 2233333456677776666 6666 4456677
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCc
Q 000718 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSV 409 (1334)
Q Consensus 332 ~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~--~~i 409 (1334)
.+|-++....|.|.+-+++-+. ++..+..+.. .+..+++..-=+.|-+|=||..|+.++..+-.. .-+
T Consensus 355 ~~l~S~~w~~R~AaL~Als~i~------EGc~~~m~~~----l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 355 AMLQSTEWKERHAALLALSVIA------EGCSDVMIGN----LPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred HHhcCCCHHHHHHHHHHHHHHH------cccHHHHHHH----HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 7799999999999999999885 3333334433 899999999999999999999999999988774 334
Q ss_pred chhhHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHhhCCC
Q 000718 410 SIGLWNEVAEVAAGRLEDKS-AIVRKSALNLLVMMLQHNPF 449 (1334)
Q Consensus 410 P~~~~~~v~~~av~RL~DKS-s~VRK~AiqLL~~lL~~nPf 449 (1334)
-..+...+....+.-+.|-- +-|-..|-.-|-.+.+.+|.
T Consensus 425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~ 465 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK 465 (1075)
T ss_pred HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH
Confidence 43343444445555555533 35667777777777887774
No 62
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.17 E-value=1.9 Score=41.90 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=61.8
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHccc---cccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHH
Q 000718 1016 ENMYARLKDPSMAVRKNAVLVLSHLILNDM---MKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDI 1092 (1334)
Q Consensus 1016 ~~ly~~L~D~~~~VR~~~l~vlthLIl~dm---iKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdi 1092 (1334)
.....-|+||.+-||-.+|..|++||...= +.+.+.+.-+...|.|+|+=|==-|-..+..|+...|+.+...+.+.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~L~~~ 85 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPILLDE 85 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 345667899999999999999999999876 55555555667789999998888888888889888888775555554
Q ss_pred H
Q 000718 1093 L 1093 (1334)
Q Consensus 1093 i 1093 (1334)
.
T Consensus 86 y 86 (92)
T PF10363_consen 86 Y 86 (92)
T ss_pred H
Confidence 3
No 63
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=88.01 E-value=5 Score=46.10 Aligned_cols=124 Identities=24% Similarity=0.372 Sum_probs=93.4
Q ss_pred HHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHhhhcCCCCHHHHHHHHHHHHHHHHc--ccc
Q 000718 974 DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMYARLKDPSMAVRKNAVLVLSHLILN--DMM 1046 (1334)
Q Consensus 974 ~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~-----t~~ly~~L~D~~~~VR~~~l~vlthLIl~--dmi 1046 (1334)
.++++-|+..|+.+.+|.|+.=+.+++|=.+. ||--=+-+ ++-+-..|.||++.||..|+..|.+|-.+ .+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~ 89 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQE 89 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHH
Confidence 36778899999999999999999999998644 66444433 56788899999999999999999998654 355
Q ss_pred ccchhHHHHHHHhcC-C-ChhHHHHHHHHHHHHhccC--CchhhhhhhHHHhhccC
Q 000718 1047 KVKGYINEMAIRVED-E-DQRISNLAKLFFHELSKKG--NNPIYNLLPDILGKLCN 1098 (1334)
Q Consensus 1047 KvKg~l~~~a~~l~D-~-d~~I~~~a~~ff~eL~~K~--~n~iyn~~pdiis~Ls~ 1098 (1334)
++|.++..+..-+.. + |..++--+-.....|+..+ .+.+.+.+|+++.-|+.
T Consensus 90 ~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~ 145 (254)
T PF04826_consen 90 QIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSS 145 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHc
Confidence 666677666663333 2 5666655556777776653 37799999998877654
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.91 E-value=13 Score=48.22 Aligned_cols=91 Identities=11% Similarity=0.120 Sum_probs=82.4
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.+..+...|.-+||.+ .|++.|-+-+|..-++|. .++|.||--++.|+--+-.+=|++++-+.+..-..|+|.+..|
T Consensus 119 ~nq~vVglAL~alg~i--~s~EmardlapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGV 195 (866)
T KOG1062|consen 119 SNQYVVGLALCALGNI--CSPEMARDLAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGV 195 (866)
T ss_pred CCeeehHHHHHHhhcc--CCHHHhHHhhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCce
Confidence 3456777777788865 489999999999999995 4999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 000718 1030 RKNAVLVLSHLILN 1043 (1334)
Q Consensus 1030 R~~~l~vlthLIl~ 1043 (1334)
=-+++..++.++..
T Consensus 196 L~~~l~l~~e~c~~ 209 (866)
T KOG1062|consen 196 LIAGLHLITELCKI 209 (866)
T ss_pred eeeHHHHHHHHHhc
Confidence 99999999999877
No 65
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.60 E-value=3.9 Score=51.64 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhcc---Ccccccc-------hHHHhhhcCCCC
Q 000718 957 SAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRF---PNLLEPW-------TENMYARLKDPS 1026 (1334)
Q Consensus 957 ~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rf---pnlve~~-------t~~ly~~L~D~~ 1026 (1334)
+-.+-|-|+--+|+..|-+.+..+.+.| .|.+-..||-++=++|.+..-| |..+|.| ..-+-.||.|.+
T Consensus 281 ~islFl~kls~l~p~i~lrq~~~~~~LL-dses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~ 359 (1128)
T COG5098 281 DISLFLNKLSELSPGIMLRQYEHFDELL-DSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTY 359 (1128)
T ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccc
Confidence 5567889999999999999999999999 6666778998888888776543 3345544 556678999999
Q ss_pred HHHHHHHHHHHHHHHHcc--ccccchhH-HHHHHHhcCCChhHHHHHHHHHHHHhccCCc
Q 000718 1027 MAVRKNAVLVLSHLILND--MMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKGNN 1083 (1334)
Q Consensus 1027 ~~VR~~~l~vlthLIl~d--miKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n 1083 (1334)
|.+|..+|.|+.-+---. +++-|-.+ ....+||.|...-+|.-|-..|..|..++|=
T Consensus 360 py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HPF 419 (1128)
T COG5098 360 PYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHPF 419 (1128)
T ss_pred hHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCh
Confidence 999999999999987654 44445555 4577899999999999999999999999873
No 66
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=1.1e+02 Score=40.26 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=107.3
Q ss_pred HHHHHHHhhcCHHHHHHhHHHHHHHHh---cCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHH
Q 000718 959 MLALCRFMIIDADYCDANLQLLFTVVE---SSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVL 1035 (1334)
Q Consensus 959 ~l~L~K~m~vs~~~c~~~l~ll~~~le---~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~ 1035 (1334)
.+++-|+=.+|.-.-+.|++.+++.++ ++++-.+-+-.|-++|+-+.|-..+-+-....|-..|+..+..|=-.+++
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~ 451 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVV 451 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHH
Confidence 456778888888889999999999885 46666788999999999999988888888888999999999999999999
Q ss_pred HHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHH----HHHHHhccCCchhhhhhhHHHhhcc
Q 000718 1036 VLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKL----FFHELSKKGNNPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1036 vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~----ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1334)
|+--||.++=-+---.|.+||+++ |--....||. .|.|.... +.-..||++-.+.
T Consensus 452 vIk~Llq~~p~~h~~ii~~La~ll---dti~vp~ARA~IiWLige~~e~----vpri~PDVLR~la 510 (968)
T KOG1060|consen 452 VIKRLLQKDPAEHLEILFQLARLL---DTILVPAARAGIIWLIGEYCEI----VPRIAPDVLRKLA 510 (968)
T ss_pred HHHHHHhhChHHHHHHHHHHHHHh---hhhhhhhhhceeeeeehhhhhh----cchhchHHHHHHH
Confidence 999999999777666779999999 4455667776 34555544 5556788777764
No 67
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.36 E-value=1.1e+02 Score=40.18 Aligned_cols=77 Identities=17% Similarity=0.277 Sum_probs=64.2
Q ss_pred ccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh
Q 000718 1012 EPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL 1089 (1334)
Q Consensus 1012 e~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~ 1089 (1334)
..|..++|+|..=++..||.-|+..|+..-.++-.=....+.-+-+|+.|.|..||+-|......+..++ +.++.++
T Consensus 465 skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~-~~l~~~~ 541 (865)
T KOG1078|consen 465 SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD-DVLNQNY 541 (865)
T ss_pred chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh-hhhcccc
Confidence 4589999999999999999999999999885554444444478999999999999999999999998887 6665554
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=87.11 E-value=1.7 Score=37.35 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHH----HhHHHHHHHHhcCCChhhHhhHHHHhhhh
Q 000718 952 PELQASAMLALCRFMIIDADYCD----ANLQLLFTVVESSPSEIVRSNCTIALGDL 1003 (1334)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~----~~l~ll~~~le~s~~~~vR~N~vi~lgDL 1003 (1334)
|.+|.+|..+||.+.-...+..+ +-+|.|+..| +.+++.||.++.-+||-|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 57899999999986655555555 5556777777 556669999999999864
No 69
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=86.97 E-value=28 Score=42.97 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=58.6
Q ss_pred HHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCccc-----------ccchHHHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000718 974 DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLL-----------EPWTENMYARLKDPSMAVRKNAVLVLSHLIL 1042 (1334)
Q Consensus 974 ~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlv-----------e~~t~~ly~~L~D~~~~VR~~~l~vlthLIl 1042 (1334)
.....+|+++|.+...+.+.-++++-+.||+---|+.+ +||.+++ ..|+.+|..+...|..+||-|+.
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFF-NLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHH-HHHcCCchhHHHHHHHHHHHHHh
Confidence 45566777788888888888888888888887766533 4665555 48888899999999999999998
Q ss_pred ccccccch
Q 000718 1043 NDMMKVKG 1050 (1334)
Q Consensus 1043 ~dmiKvKg 1050 (1334)
.+-.+..|
T Consensus 131 ~~~~~~~~ 138 (429)
T cd00256 131 FGLAKMEG 138 (429)
T ss_pred cCccccch
Confidence 77665555
No 70
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.87 E-value=44 Score=42.58 Aligned_cols=91 Identities=11% Similarity=0.185 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChh---hHhhHHHHhhhhhhccCcccccchHHHhhhcC---
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEI---VRSNCTIALGDLAVRFPNLLEPWTENMYARLK--- 1023 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~---vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~--- 1023 (1334)
.|..+|..|+-.|..+|--..+++.+....|..+|. +.++. +=.|.++.+=++-. . --...||..+.
T Consensus 71 ed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~-tdd~~E~~~v~~sL~~ll~~d~---k---~tL~~lf~~i~~~~ 143 (556)
T PF05918_consen 71 EDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQ-TDDPVELDAVKNSLMSLLKQDP---K---GTLTGLFSQIESSK 143 (556)
T ss_dssp SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT----HHHHHHHHHHHHHHHHH-H---H---HHHHHHHHHHH---
T ss_pred ccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhcCc---H---HHHHHHHHHHHhcc
Confidence 466789999999998887778999999999999994 66654 44555555544322 1 11356666665
Q ss_pred CCCHHHHHHHHHHH-HHHH--Hccccc
Q 000718 1024 DPSMAVRKNAVLVL-SHLI--LNDMMK 1047 (1334)
Q Consensus 1024 D~~~~VR~~~l~vl-thLI--l~dmiK 1047 (1334)
..+..||..+|..| ++|+ -.+.++
T Consensus 144 ~~de~~Re~~lkFl~~kl~~l~~~~~~ 170 (556)
T PF05918_consen 144 SGDEQVRERALKFLREKLKPLKPELLT 170 (556)
T ss_dssp HS-HHHHHHHHHHHHHHGGGS-TTTS-
T ss_pred cCchHHHHHHHHHHHHHHhhCcHHHhh
Confidence 56778999988655 5555 444454
No 71
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.76 E-value=1.3e+02 Score=40.43 Aligned_cols=140 Identities=16% Similarity=0.155 Sum_probs=101.8
Q ss_pred Cccccc-hHHHHHHHHHhhh-hhHHHhhHhHHHHHhC------CCc--hhHHHHHHHHHHHHHHHHhcCcccccchhhhh
Q 000718 301 DTVGAE-NIGRFLVELADRL-PKLISTNIGVLILHFG------GES--YKIRNALVGVLGKLVAKAFKDIEGEASSKSVR 370 (1334)
Q Consensus 301 D~~g~K-n~s~FL~~Lae~~-P~lvl~~is~L~~~Ld------~es--Y~lRnavve~ig~ii~~~l~~~~~~~~~k~~~ 370 (1334)
|-..|+ +-..|+..++.+- +...-+-|+.+.+.|. .+. |----+-+-++|.+...+.+.. . .
T Consensus 384 d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s-~---~---- 455 (1010)
T KOG1991|consen 384 DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKS-P---Y---- 455 (1010)
T ss_pred ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCC-c---h----
Confidence 444444 4556777887777 7777788888888887 333 3333456778888873333322 1 1
Q ss_pred hhhHHHHHHHHHHHcC----CCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhcc-CCchhHHHHHHHHHHHHHh
Q 000718 371 LRTKQAMLEILLERCR----DVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLE-DKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 371 ~~~rd~lld~L~eR~~----D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~-DKSs~VRK~AiqLL~~lL~ 445 (1334)
++.+=..|..|+. +-..|-|+||.-++...++.+---..-..+.++.+..-|. |+.--||=-|.-=|..|+.
T Consensus 456 ---~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 456 ---KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred ---HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 4556666666664 8899999999999999997653333456799999999998 9999999999999999999
Q ss_pred hCCCCC
Q 000718 446 HNPFGP 451 (1334)
Q Consensus 446 ~nPf~~ 451 (1334)
++++..
T Consensus 533 ~~~~~~ 538 (1010)
T KOG1991|consen 533 NQEQAD 538 (1010)
T ss_pred cchhhh
Confidence 998763
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.57 E-value=1.6 Score=54.94 Aligned_cols=46 Identities=26% Similarity=0.290 Sum_probs=25.4
Q ss_pred hHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHH
Q 000718 992 VRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLS 1038 (1334)
Q Consensus 992 vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlt 1038 (1334)
||--++-+|.=++.+ =.+=|.+.+.+..+|.|.++.||.....+|-
T Consensus 426 VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D~s~dvRe~l~elL~ 471 (823)
T KOG2259|consen 426 VRLKAIFALTMISVH-LAIREEQLRQILESLEDRSVDVREALRELLK 471 (823)
T ss_pred HHHHHHHHHHHHHHH-heecHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 444334333333333 3344566677777777777777776655543
No 73
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.49 E-value=1.3e+02 Score=39.33 Aligned_cols=160 Identities=17% Similarity=0.184 Sum_probs=120.4
Q ss_pred cCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHH
Q 000718 277 YADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKA 356 (1334)
Q Consensus 277 ~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~ 356 (1334)
.|...|..++++-.+ .+|-.--|=+-.+|..-|..-|..-+-.+..++.-...++-.+|.+-+..+|.+=..
T Consensus 45 ~DvSslF~dvvk~~~-------T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~- 116 (734)
T KOG1061|consen 45 KDVSSLFPDVVKCMQ-------TRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD- 116 (734)
T ss_pred cchHhhhHHHHhhcc-------cCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-
Confidence 344556666665332 134445577888999999999999999999999999999999999999988876211
Q ss_pred hcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcC---CcchhhHHHHHHHHHhhccCCchhHH
Q 000718 357 FKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEH---SVSIGLWNEVAEVAAGRLEDKSAIVR 433 (1334)
Q Consensus 357 l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~---~iP~~~~~~v~~~av~RL~DKSs~VR 433 (1334)
.. ...+++-|.....|.+||||..|-=...++-.-+ +.+. .+......=+.|-++.|-
T Consensus 117 -----------~i----~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~----gl~~~L~~ll~D~~p~VV 177 (734)
T KOG1061|consen 117 -----------KI----TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDS----GLVDALKDLLSDSNPMVV 177 (734)
T ss_pred -----------HH----HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcccc----chhHHHHHHhcCCCchHH
Confidence 11 4678999999999999999999998888887743 2232 444555555569999999
Q ss_pred HHHHHHHHHHHhhCC--CCCCCChhHHHHHHH
Q 000718 434 KSALNLLVMMLQHNP--FGPQLRIASFEATLD 463 (1334)
Q Consensus 434 K~AiqLL~~lL~~nP--f~~~L~~~~~~~~Le 463 (1334)
=||+..|..+.+.|| ....|+......-++
T Consensus 178 AnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~ 209 (734)
T KOG1061|consen 178 ANALAALSEIHESHPSVNLLELNPQLINKLLE 209 (734)
T ss_pred HHHHHHHHHHHHhCCCCCcccccHHHHHHHHH
Confidence 999999999999998 456666554444333
No 74
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=85.39 E-value=1.5e+02 Score=39.83 Aligned_cols=231 Identities=15% Similarity=0.202 Sum_probs=138.2
Q ss_pred cchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhh-----cccchHHHHHHHHHHH
Q 000718 200 PDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHK-----YDFVVVHMADAVAGAE 274 (1334)
Q Consensus 200 ~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~-----~ehl~~~~Ae~l~~l~ 274 (1334)
.+|.|.. +.++..++||+. +..+-....+-+|.++.+-++.- ...|+..|.. -|.+-.--+=++....
T Consensus 41 d~dSe~k-vv~~lLklL~D~----ngEVQnlAVKClg~lvsKvke~~--le~~ve~L~~~~~s~keq~rdissi~Lktvi 113 (1233)
T KOG1824|consen 41 DDDSERK-VVKMLLKLLEDK----NGEVQNLAVKCLGPLVSKVKEDQ--LETIVENLCSNMLSGKEQLRDISSIGLKTVI 113 (1233)
T ss_pred cccchhH-HHHHHHHHHhcc----CcHHHHHHHHHHHHHHhhchHHH--HHHHHHHHhhhhccchhhhccHHHHHHHHHH
Confidence 3455554 458888999876 57777778888888887754321 1112332221 1111111111111111
Q ss_pred HH---cCCchhHHHHHHHHhhcCCCcc--ccCccccc-----hHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHH
Q 000718 275 KK---YADGSLATYLIREIGRTNPKAY--VKDTVGAE-----NIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNA 344 (1334)
Q Consensus 275 ~~---~~~~~l~~~ilrEI~~~~~~~~--~~D~~g~K-----n~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRna 344 (1334)
-+ +..+.++.-|...|..+--... ..|..|.| .++..+.+++...|.-=..-+..++++|.+.--.+|+=
T Consensus 114 ~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKk 193 (1233)
T KOG1824|consen 114 ANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKK 193 (1233)
T ss_pred hcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHH
Confidence 11 1122333334333322211110 12444443 56789999999999966677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHh
Q 000718 345 LVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAG 423 (1334)
Q Consensus 345 vve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~ 423 (1334)
-+.++|.+.... ..+-+... .+.+++-|-.| +.++-+|+ -+|++..+|.+ |.---.+...+..+.+.
T Consensus 194 ai~~l~~la~~~-----~~~ly~~l----i~~Ll~~L~~~--~q~~~~rt-~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~ 261 (1233)
T KOG1824|consen 194 AITALGHLASSC-----NRDLYVEL----IEHLLKGLSNR--TQMSATRT-YIQCLAAICRQAGHRFGSHLDKIVPLVAD 261 (1233)
T ss_pred HHHHHHHHHHhc-----CHHHHHHH----HHHHHhccCCC--CchHHHHH-HHHHHHHHHHHhcchhhcccchhhHHHHH
Confidence 999999986442 11233334 56666666666 66667776 47899999985 32222344456666665
Q ss_pred hc---cCCchhHHHHHHHHHHHHHhhCCC
Q 000718 424 RL---EDKSAIVRKSALNLLVMMLQHNPF 449 (1334)
Q Consensus 424 RL---~DKSs~VRK~AiqLL~~lL~~nPf 449 (1334)
=+ +-----.|-..+|-|..||..+|-
T Consensus 262 y~~~~e~~dDELrE~~lQale~fl~rcp~ 290 (1233)
T KOG1824|consen 262 YCNKIEEDDDELREYCLQALESFLRRCPK 290 (1233)
T ss_pred HhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence 55 323346899999999999999885
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=85.38 E-value=87 Score=38.50 Aligned_cols=74 Identities=24% Similarity=0.235 Sum_probs=59.3
Q ss_pred hHHHHHH----HHHHHcCCCCchhhHHHHHHHHHHHhcCCcch----hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Q 000718 373 TKQAMLE----ILLERCRDVSAYTRSRVLQVWAELCEEHSVSI----GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMML 444 (1334)
Q Consensus 373 ~rd~lld----~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~----~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL 444 (1334)
.|++||. .|.+.+.+.+.-.|..-|..|..|+.+ +|. .....++.+.+..|.=.+..||.++++.|..++
T Consensus 316 ykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~--vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l 393 (415)
T PF12460_consen 316 YKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKN--VPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMIL 393 (415)
T ss_pred HhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3666655 466777777777899999999999994 454 445589999999998777789999999999999
Q ss_pred hhCC
Q 000718 445 QHNP 448 (1334)
Q Consensus 445 ~~nP 448 (1334)
..+|
T Consensus 394 ~~~~ 397 (415)
T PF12460_consen 394 EEAP 397 (415)
T ss_pred HcCH
Confidence 9885
No 76
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=83.14 E-value=6.1 Score=48.45 Aligned_cols=105 Identities=19% Similarity=0.064 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.++.+|++|.-+|+++-. ..-.+.|...| ++++|.||.+++-++|- |- .+|+ +.+-..|+|+|+.|
T Consensus 98 ~~~~vr~aaa~ALg~i~~------~~a~~~L~~~L-~~~~p~vR~aal~al~~---r~---~~~~-~~L~~~L~d~d~~V 163 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGG------RQAEPWLEPLL-AASEPPGRAIGLAALGA---HR---HDPG-PALEAALTHEDALV 163 (410)
T ss_pred CCHHHHHHHHHHHhcCCc------hHHHHHHHHHh-cCCChHHHHHHHHHHHh---hc---cChH-HHHHHHhcCCCHHH
Confidence 467789999999997532 23345566666 67788899888866665 22 2343 45666788999999
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHH
Q 000718 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFF 1074 (1334)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff 1074 (1334)
|+.++.+|-.| +-..-+..+..++.|+|+.|+.-|-.=.
T Consensus 164 ra~A~raLG~l------~~~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 164 RAAALRALGEL------PRRLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHHHHHhh------ccccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999988554 4444445566779999999998776533
No 77
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=81.97 E-value=1.6e+02 Score=37.63 Aligned_cols=264 Identities=13% Similarity=0.160 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHcCCCCchhhH-HHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh-CCCC
Q 000718 374 KQAMLEILLERCRDVSAYTRS-RVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH-NPFG 450 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRs-kvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~-nPf~ 450 (1334)
-..|++.|.+-+.|.++|-|- -+++.+...|.. +.----+...++-.+....-||.--||.+|..-.+.++.. +||+
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a 251 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA 251 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch
Confidence 467999999999999999988 599999999985 5332234568889999999999999999999999998874 5666
Q ss_pred CCCChhHHHHHHHHHHHHhcccCCCCCCCcccCCCCCCCCCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCC
Q 000718 451 PQLRIASFEATLDEYRKKLNGLEPDIHSESITDGLPSDRGTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKD 530 (1334)
Q Consensus 451 ~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~ 530 (1334)
.++=+-.+-..+.+. +.
T Consensus 252 VK~llpsll~~l~~~--kW------------------------------------------------------------- 268 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEA--KW------------------------------------------------------------- 268 (569)
T ss_pred hhHhhhhhHHHHHHH--hh-------------------------------------------------------------
Confidence 433221111111110 00
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhccc
Q 000718 531 SSVPDVGNLEQTRALVASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQ 610 (1334)
Q Consensus 531 ~~~~~~~~l~k~~~~v~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWsk 610 (1334)
+.... +++.+..+..+.|....+..+. -|+..-.-.|..
T Consensus 269 ---------rtK~a-------slellg~m~~~ap~qLs~~lp~-------------------------iiP~lsevl~DT 307 (569)
T KOG1242|consen 269 ---------RTKMA-------SLELLGAMADCAPKQLSLCLPD-------------------------LIPVLSEVLWDT 307 (569)
T ss_pred ---------hhHHH-------HHHHHHHHHHhchHHHHHHHhH-------------------------hhHHHHHHHccC
Confidence 00111 1122223333333222222221 223333335888
Q ss_pred CccHHHHHHHHHHHhh--cCCC-hHHHHHHHHHHHhhcCcchhhHHHHHHHH-HHhCCCCCHHHHHHHHHHhhccCCCCC
Q 000718 611 DKSIYEAVENAFITIY--VRKS-PVETAKNLLNLAIDSNIGDQAAMEFIVGT-LVSKGDVSMSTISALWDFFCFNVSGTT 686 (1334)
Q Consensus 611 d~~V~~~vi~ay~~Ly--~~~~-~~~ia~nLi~L~~~at~~dl~sLEeLl~~-~~~~~~I~~~vi~~LW~~~~~~~~~~s 686 (1334)
.+.||++-++|-.++- ++.+ -+.++..|++-+.+.+...-.|+.-|... ++ ..+++..+..+--+...+..+-+
T Consensus 308 ~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV--~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 308 KPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFV--AEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred CHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeee--eeecchhHHHHHHHHHHHHhhcc
Confidence 8888888888877653 2222 56666677776666665444444444322 11 13444444444333322222223
Q ss_pred HHhHHHHHHHHH-HHhcc-ChhhhhhhHHHHHHhhcCC-----CCCCcHHHHHHHHHHHHhcccc
Q 000718 687 PEKSRAALSVLC-MAAKS-SAAVLGSHLQDIIDIGFGR-----WAKVEPLLARTACIAIQRLSQE 744 (1334)
Q Consensus 687 ~~~~r~Al~lL~-Mla~a-~~~iv~~~ld~l~~iglg~-----~~~~D~~lar~~c~aL~~l~~~ 744 (1334)
....|.+.++.+ |.... +|..+..=+..|+. |+.. ....-.+.+|..|..+.+++..
T Consensus 386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp-~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP-GLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh-HHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 344466666665 66655 77777766666655 3322 1122346777778888888754
No 78
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=81.44 E-value=11 Score=36.95 Aligned_cols=92 Identities=18% Similarity=0.166 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc--CCcchhhHHHHH
Q 000718 341 IRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVA 418 (1334)
Q Consensus 341 lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~--~~iP~~~~~~v~ 418 (1334)
-|++-+-.++.+-+..-+. .... .+.++..++.=+.|.++=||.-|.+.+..|+.. +.+ +.+++++.
T Consensus 2 ~R~ggli~Laa~ai~l~~~------~~~~----l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF 70 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD------ISKY----LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIF 70 (97)
T ss_pred chhHHHHHHHHHHHHchHh------HHHH----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3666666666664433221 2223 788999999999999999999999999999984 333 34789999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHH
Q 000718 419 EVAAGRLEDKSAIVRKSALNLLVMML 444 (1334)
Q Consensus 419 ~~av~RL~DKSs~VRK~AiqLL~~lL 444 (1334)
......+.|....||..| .+|..+|
T Consensus 71 ~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 71 DALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 999999999999999888 6666655
No 79
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=81.37 E-value=2 Score=33.01 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHH
Q 000718 1016 ENMYARLKDPSMAVRKNAVLVLSHLI 1041 (1334)
Q Consensus 1016 ~~ly~~L~D~~~~VR~~~l~vlthLI 1041 (1334)
|.+..+|+|+++.||.+|+.-|..+.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56777788888888888887777664
No 80
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=81.25 E-value=2.3 Score=55.24 Aligned_cols=197 Identities=16% Similarity=0.198 Sum_probs=134.9
Q ss_pred hhhHhhHHHHhhhhhhccCcccccchHHHhhhcCC-CCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHH
Q 000718 990 EIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKD-PSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISN 1068 (1334)
Q Consensus 990 ~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D-~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~ 1068 (1334)
+.||+-.+|-||-||..|-.|.-.|.|.+-+-|.- .+..||-|-+.+++.+-..=-+++--+|--+++||.||++-||.
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRr 1024 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRR 1024 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHH
Confidence 57999999999999999999999999999998864 45789999998888888777777888888999999999999999
Q ss_pred HHHHHHHHHhccCCchhhh--hhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhh----HHHHHHHH-----Hhhhhcc
Q 000718 1069 LAKLFFHELSKKGNNPIYN--LLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQ----MEALVEKL-----CNRFSGV 1137 (1334)
Q Consensus 1069 ~a~~ff~eL~~K~~n~iyn--~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kdkq----~e~LveKL-----c~Rf~~~ 1137 (1334)
-+-..+..|.+.+ =-=|| +|.-+++.|-| +.++.++.-+|+++.|=+-|- --+.||-+ |.|..+.
T Consensus 1025 qt~ilL~rLLq~~-~vKw~G~Lf~Rf~l~l~D---~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~~~h~g~ 1100 (1529)
T KOG0413|consen 1025 QTIILLARLLQFG-IVKWNGELFIRFMLALLD---ANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQARRHVGV 1100 (1529)
T ss_pred HHHHHHHHHHhhh-hhhcchhhHHHHHHHHcc---cCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHhhCC
Confidence 8888888777764 11111 34455555544 347788888888887743322 23444443 4555554
Q ss_pred cc--hHhHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHhhh
Q 000718 1138 TD--IRQWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKK 1192 (1334)
Q Consensus 1138 ~~--~rqwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk 1192 (1334)
.+ +..-.+.-|.+.-= +++.=-+=+.-|.+.=+.+.|+.-++-|..|+...=.
T Consensus 1101 ~n~~qs~r~~~~fSi~G~--d~~aR~~Rm~IY~fLL~~~~de~rf~v~~kiC~~Ila 1155 (1529)
T KOG0413|consen 1101 GNHDQSDRGQVDFSIGGG--DPLARPSRMAIYTFLLDSLDDESRFDVKMKICQRILA 1155 (1529)
T ss_pred CCCcccchhceeEeecCC--CcccchhhhhHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 32 11222223332211 2222222233344555667899999999999887643
No 81
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=80.31 E-value=5.9 Score=39.55 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=66.7
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH--HHHHh----------cCC
Q 000718 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE--MAIRV----------EDE 1062 (1334)
Q Consensus 995 N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~--~a~~l----------~D~ 1062 (1334)
-.+.-+||++..+|.-...-...|..+|.++++.|..-||.+|=+|+.|+==++..++.. +..-+ .|.
T Consensus 19 ~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~ 98 (115)
T cd00197 19 PLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDV 98 (115)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCC
Confidence 457778999988888878889999999999999999999999999999997777766632 11111 255
Q ss_pred ChhHHHHHHHHHHHHh
Q 000718 1063 DQRISNLAKLFFHELS 1078 (1334)
Q Consensus 1063 d~~I~~~a~~ff~eL~ 1078 (1334)
+..|++-++.++..++
T Consensus 99 ~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 99 STNVREKAIELVQLWA 114 (115)
T ss_pred ChHHHHHHHHHHHHHh
Confidence 7888888888777654
No 82
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=80.11 E-value=24 Score=46.44 Aligned_cols=167 Identities=16% Similarity=0.056 Sum_probs=118.5
Q ss_pred HHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhh--hHHHhhHhHHHHHhCCCchhHHHHH
Q 000718 268 DAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLP--KLISTNIGVLILHFGGESYKIRNAL 345 (1334)
Q Consensus 268 e~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P--~lvl~~is~L~~~Ld~esY~lRnav 345 (1334)
+.+..+..+.+ ..++.+-+.+++...-.+ +.....+.++.++.++++..- -.+..-+..++......+|..|.++
T Consensus 501 ~~ip~la~q~~-~~~~~~~~~~l~~~~l~d--~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~ 577 (759)
T KOG0211|consen 501 EYIPQLALQLG-VEFFDEKLAELLRTWLPD--HVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTT 577 (759)
T ss_pred HHHHHHHHhhh-hHHhhHHHHHHHHhhhhh--hHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHH
Confidence 34444444444 345555566666654443 556677777777777777655 4444555556666556699999999
Q ss_pred HHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc
Q 000718 346 VGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL 425 (1334)
Q Consensus 346 ve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL 425 (1334)
+-++..+ ..++..+- +...|+..+..=..|-.|.||-.|+..+.++..-=..|. +...|..+..-=.
T Consensus 578 l~si~~l-a~v~g~ei-----------~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~-~~~~v~pll~~L~ 644 (759)
T KOG0211|consen 578 LFSIHEL-AEVLGQEI-----------TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESV-RDEEVLPLLETLS 644 (759)
T ss_pred HHHHHHH-HHHhccHH-----------HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHH-HHHHHHHHHHHhc
Confidence 9999955 45444321 268899999999999999999999999999988665664 5567777777777
Q ss_pred cCCchhHHHHHHHHHHHHHhhCCCC
Q 000718 426 EDKSAIVRKSALNLLVMMLQHNPFG 450 (1334)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL~~nPf~ 450 (1334)
.|-...||=.|++-++.+...--+.
T Consensus 645 ~d~~~dvr~~a~~a~~~i~l~~~~~ 669 (759)
T KOG0211|consen 645 SDQELDVRYRAILAFGSIELSRLES 669 (759)
T ss_pred cCcccchhHHHHHHHHHHHHHHHhh
Confidence 7999999999999887776654443
No 83
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.02 E-value=13 Score=46.56 Aligned_cols=70 Identities=26% Similarity=0.274 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1334)
.+++|-.++.-+--.---||.+++|++..+.+. +-|--..++.+..-...|+-|+-+.||+.|+..|+.+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~ 159 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYY 159 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 577777777555555678999999999999985 6666778899999999999999999999999999886
No 84
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=79.84 E-value=14 Score=36.30 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC
Q 000718 307 NIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR 386 (1334)
Q Consensus 307 n~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~ 386 (1334)
.++..-+.|....+..+-.-+..++..++.+...+|=+..|++.||. +...++- +..-+.+|+.|...+.
T Consensus 9 ~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~-k~~~~~~---------l~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 9 GLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNIS-KVARGEI---------LPYFNEIFDALCKLSA 78 (97)
T ss_pred HHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-HHHHHHH---------HHHHHHHHHHHHHHHc
Confidence 44555555566666666667778888999999999999999999996 4444322 2236889999999999
Q ss_pred CCCchhhHHHHHHHHHHH
Q 000718 387 DVSAYTRSRVLQVWAELC 404 (1334)
Q Consensus 387 D~n~yVRskvLQ~~~~L~ 404 (1334)
|..+-||+.| .++-+|.
T Consensus 79 D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLL 95 (97)
T ss_pred CCchhHHHHH-HHHHHHh
Confidence 9999999998 6655554
No 85
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.66 E-value=33 Score=44.52 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=108.1
Q ss_pred hhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHH-HhCCCchhHHHHHHHHHHHHHHHHhcC
Q 000718 281 SLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLIL-HFGGESYKIRNALVGVLGKLVAKAFKD 359 (1334)
Q Consensus 281 ~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~-~Ld~esY~lRnavve~ig~ii~~~l~~ 359 (1334)
.++..||.-+.+-++++..-|=++.|+-+.=|.=+|+.+-.-|++++=-++. ++.+++..=|-+-+=++|.+...
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g---- 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEG---- 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC----
Confidence 4666777777777777766677889999999999999999999887655555 79999999999999999988632
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhc---CCcchhhHHHHHHHHHhhccC
Q 000718 360 IEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEE---HSVSIGLWNEVAEVAAGRLED 427 (1334)
Q Consensus 360 ~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~---~~iP~~~~~~v~~~av~RL~D 427 (1334)
. +...... --.+-+..++.=..|.+-+||..+=.++.++++. .++|-.+.+.++...+.-|.|
T Consensus 395 p--~~~~Lt~---iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D 460 (859)
T KOG1241|consen 395 P--EPDKLTP---IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND 460 (859)
T ss_pred C--chhhhhH---HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh
Confidence 2 1111111 1455666677777799999999999999999994 578888888888888888888
No 86
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.83 E-value=3.1 Score=42.43 Aligned_cols=65 Identities=22% Similarity=0.345 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhh---hhccCcccccc-----hHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000718 977 LQLLFTVVESSPSEIVRSNCTIALGDL---AVRFPNLLEPW-----TENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1334)
Q Consensus 977 l~ll~~~le~s~~~~vR~N~vi~lgDL---~~rfpnlve~~-----t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1334)
+..|+.+|++|.+|.+ +.||+.|+ +..||+-..-. -..++..|.++|+.||+.||..+.-|+.+.
T Consensus 45 lk~L~~lL~~s~d~~~---laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 45 LKKLIKLLDKSDDPTT---LAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHH-SHHHHHH---HHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCCCcce---eehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 5778888888877754 45666665 56678754332 467899999999999999999999988764
No 87
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=77.31 E-value=1.2e+02 Score=40.41 Aligned_cols=228 Identities=13% Similarity=0.121 Sum_probs=160.8
Q ss_pred CchhhhhhHHHHHHhcC-CcCCCCChHHHHHHHHHHHHHhhcCHHHHHHh----HHHHHHHHhc-CCChhhH---hhHHH
Q 000718 928 KNLIGHCASFLSKFCRN-FSLMNKYPELQASAMLALCRFMIIDADYCDAN----LQLLFTVVES-SPSEIVR---SNCTI 998 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~-~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~----l~ll~~~le~-s~~~~vR---~N~vi 998 (1334)
..++..|.|.|.++-.. ...+ ....-..-+-+||-.+.++.+|...+ +|+++.+.-+ +.||.|= --++-
T Consensus 521 ~~vl~~~~p~ild~L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~ 598 (1005)
T KOG2274|consen 521 VKVLLSLQPMILDGLLQLASKS--SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFE 598 (1005)
T ss_pred ceeccccchHHHHHHHHHcccc--cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 77888889988887654 2222 45566777889999999999998654 7998888744 5677443 34566
Q ss_pred HhhhhhhccCcccccchHHHhhhcCCCC----HHHHHHHHHHHHHHHHcccccc-ch---hHH-HHHHHhcCCC-hhHHH
Q 000718 999 ALGDLAVRFPNLLEPWTENMYARLKDPS----MAVRKNAVLVLSHLILNDMMKV-KG---YIN-EMAIRVEDED-QRISN 1068 (1334)
Q Consensus 999 ~lgDL~~rfpnlve~~t~~ly~~L~D~~----~~VR~~~l~vlthLIl~dmiKv-Kg---~l~-~~a~~l~D~d-~~I~~ 1068 (1334)
.+.+-+.+|-+..+..+|.+-.-|.-++ +..--.++-+||-++.+.==-. ++ +.+ -+++|+.-.| -..-.
T Consensus 599 el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ 678 (1005)
T KOG2274|consen 599 ELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQ 678 (1005)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHH
Confidence 7888889999999999999999998887 8888899999998887643222 12 221 3667664332 33444
Q ss_pred HHHHHHHHHhcc----------CCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhh-----hhhHHHHHHHHHhh
Q 000718 1069 LAKLFFHELSKK----------GNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKK-----DKQMEALVEKLCNR 1133 (1334)
Q Consensus 1069 ~a~~ff~eL~~K----------~~n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~K-----dkq~e~LveKLc~R 1133 (1334)
.|.-+|.-+-.+ +|.--+..+=+.+++|-||..++-.=..+=+.++..|.| ..+..+|..-...|
T Consensus 679 ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 679 NATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISR 758 (1005)
T ss_pred hHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 555555543333 121113466677888888866655545666666666664 34567888899999
Q ss_pred hhcccchHhHHHHHHHHhccCCCh
Q 000718 1134 FSGVTDIRQWEYISYCLSQLAFTE 1157 (1334)
Q Consensus 1134 f~~~~~~rqwrdiafcLslL~~~e 1157 (1334)
+..+++.+--.++.+.+..|.+++
T Consensus 759 mq~ae~lsviQsLi~VfahL~~t~ 782 (1005)
T KOG2274|consen 759 LQQAETLSVIQSLIMVFAHLVHTD 782 (1005)
T ss_pred HHHhhhHHHHHHHHHHHHHHhhCC
Confidence 999999999999999998888844
No 88
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.15 E-value=24 Score=44.35 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHH-----hHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHh
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDA-----NLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMY 1019 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~-----~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~-----t~~ly 1019 (1334)
.+|.+|--|.-+|....+-+++--+- -+|+|+..| .|++..||.=+|-|||+++-.=|.+=|-- .+.+-
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl 200 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLL 200 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHH
Confidence 57999999999999999988877553 368888887 89999999999999999986554422111 23355
Q ss_pred hhcCCCCH-HHHHHHHHHHHHHHHcc-----ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhh
Q 000718 1020 ARLKDPSM-AVRKNAVLVLSHLILND-----MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNL 1088 (1334)
Q Consensus 1020 ~~L~D~~~-~VR~~~l~vlthLIl~d-----miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~ 1088 (1334)
..|..+++ ...||+.-+|+.|--+. |-+++.-|--+.++|-..|+.|...|--=...|+.- +|..++.
T Consensus 201 ~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg-~ne~iq~ 274 (514)
T KOG0166|consen 201 RLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG-SNEKIQM 274 (514)
T ss_pred HHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-ChHHHHH
Confidence 55555554 78889999999999776 588888888899999999999998877666666543 3555443
No 89
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=76.46 E-value=2.4 Score=35.27 Aligned_cols=38 Identities=34% Similarity=0.458 Sum_probs=29.0
Q ss_pred hhhhhhccCcccc--cchHHHhhhcCCCCHHHHHHHHHHH
Q 000718 1000 LGDLAVRFPNLLE--PWTENMYARLKDPSMAVRKNAVLVL 1037 (1334)
Q Consensus 1000 lgDL~~rfpnlve--~~t~~ly~~L~D~~~~VR~~~l~vl 1037 (1334)
++=+.-..|++++ .-...+-.+|.|+++.||+.|+-+|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 3444556677776 5578889999999999999998653
No 90
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=76.31 E-value=8.7 Score=41.99 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
.+.|++.+.+-+.+.++-||..|++++.-+..+|-++.. ..+...+.=.-|..+.+|+.|.++++.+-++||
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~---~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK---QCVPTLIALETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH---HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence 578999999999999999999999999999999977542 345555556678999999999999999999887
No 91
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=75.70 E-value=11 Score=46.21 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.+|.+|.+++-++++. . ..-.+-+.+.| +++++.||..++-++|.+.- ++ -.+.+...|.|+++.|
T Consensus 129 ~~p~vR~aal~al~~r-~------~~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~--~~----a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 129 SEPPGRAIGLAALGAH-R------HDPGPALEAAL-THEDALVRAAALRALGELPR--RL----SESTLRLYLRDSDPEV 194 (410)
T ss_pred CChHHHHHHHHHHHhh-c------cChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc--cc----chHHHHHHHcCCCHHH
Confidence 6889999888777662 2 22356777888 59999999999999999875 33 3456778899999999
Q ss_pred HHHHHHHHHH
Q 000718 1030 RKNAVLVLSH 1039 (1334)
Q Consensus 1030 R~~~l~vlth 1039 (1334)
|..++.-+..
T Consensus 195 R~aA~~al~~ 204 (410)
T TIGR02270 195 RFAALEAGLL 204 (410)
T ss_pred HHHHHHHHHH
Confidence 9999988843
No 92
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.59 E-value=41 Score=45.68 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=103.6
Q ss_pred HHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc--CHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcc-cc
Q 000718 936 SFLSKFCRNFSLMNKYPELQASAMLALCRFMII--DADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNL-LE 1012 (1334)
Q Consensus 936 PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v--s~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnl-ve 1012 (1334)
-+|+.+|.+ ++|.+++|-+-.++-||.- -.+==+-=|+.|+|.| +..|+.+|+-..=.+.-+++.---- ++
T Consensus 581 ~~v~sLlsd-----~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfL-NDkDw~LR~aFfdsI~gvsi~VG~rs~s 654 (1431)
T KOG1240|consen 581 QMVSSLLSD-----SPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFL-NDKDWRLRGAFFDSIVGVSIFVGWRSVS 654 (1431)
T ss_pred HHHHHHHcC-----CchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHh-cCccHHHHHHHHhhccceEEEEeeeeHH
Confidence 344445555 3345555555554444321 1111112378899999 6669999986654444444433222 56
Q ss_pred cc-hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH---HHHHHHhcCCChhHHHHHHHHHHHHhccCCch-hhh
Q 000718 1013 PW-TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI---NEMAIRVEDEDQRISNLAKLFFHELSKKGNNP-IYN 1087 (1334)
Q Consensus 1013 ~~-t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l---~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~-iyn 1087 (1334)
.| .|.|-..|.|+.+.|=-.+|--|+-||..|.++=+-.+ -..+=+|+-||.=||..+-.|....+.+-.++ .|=
T Consensus 655 eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc 734 (1431)
T KOG1240|consen 655 EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYC 734 (1431)
T ss_pred HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheE
Confidence 66 68999999999999999999999999999999844432 35566789999999999999999888874233 555
Q ss_pred hhhHHHhh
Q 000718 1088 LLPDILGK 1095 (1334)
Q Consensus 1088 ~~pdiis~ 1095 (1334)
.+..+|.-
T Consensus 735 ~l~P~irp 742 (1431)
T KOG1240|consen 735 KLMPLIRP 742 (1431)
T ss_pred EeehhhHH
Confidence 55444443
No 93
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.58 E-value=2.9e+02 Score=36.47 Aligned_cols=181 Identities=15% Similarity=0.239 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHH-HHHHH---hcCCChhhHhhHHHHhh-------hhhhccCcccccchH--
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQL-LFTVV---ESSPSEIVRSNCTIALG-------DLAVRFPNLLEPWTE-- 1016 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~l-l~~~l---e~s~~~~vR~N~vi~lg-------DL~~rfpnlve~~t~-- 1016 (1334)
+|..+|.+|+.||+|+|.+-=+|-+..+.- ||.+- -+|+++.|..-.|=.-+ |++.-|-.-+|.+.+
T Consensus 229 ~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~ 308 (859)
T KOG1241|consen 229 PDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPS 308 (859)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch
Confidence 688999999999999999999998887743 66442 35888877766665544 666666666665554
Q ss_pred --------------HHhhhc-C-CCC--------HHHHHHHHHHHHHHHHccccccchhHHHHHH-HhcCCChhHHHHHH
Q 000718 1017 --------------NMYARL-K-DPS--------MAVRKNAVLVLSHLILNDMMKVKGYINEMAI-RVEDEDQRISNLAK 1071 (1334)
Q Consensus 1017 --------------~ly~~L-~-D~~--------~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~-~l~D~d~~I~~~a~ 1071 (1334)
.|-..| + |++ ..---+||++++.+.-.|||. ++..+.. -+..||-+=++.|-
T Consensus 309 ~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~---~Vl~Fiee~i~~pdwr~reaav 385 (859)
T KOG1241|consen 309 SKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP---HVLPFIEENIQNPDWRNREAAV 385 (859)
T ss_pred hhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh---hhHHHHHHhcCCcchhhhhHHH
Confidence 222222 2 333 345668999999999999998 7766666 89999999999999
Q ss_pred HHHH-HHhccCCch----hhhhhhHHHhhccCCC-----CChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 000718 1072 LFFH-ELSKKGNNP----IYNLLPDILGKLCNQN-----LKTESFCNIMQLLIGFIKKDKQMEALVEKLCNR 1133 (1334)
Q Consensus 1072 ~ff~-eL~~K~~n~----iyn~~pdiis~Ls~~~-----~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~R 1133 (1334)
.-|- -|.-.+++. +-..+|-++.-++|+. -.+=.|-+|.+|+.+-+.-+-+--+++.=|.+-
T Consensus 386 mAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~g 457 (859)
T KOG1241|consen 386 MAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEG 457 (859)
T ss_pred HHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHH
Confidence 9775 455554432 3456677777778872 244577788888887776555544444444333
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=74.16 E-value=67 Score=37.58 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=54.8
Q ss_pred hcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000718 985 ESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1334)
Q Consensus 985 e~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1334)
-+++++.||.-.+.+||=.|.-..++-..+.+-++..+...+..||-+|+..++-|++-
T Consensus 36 v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~ 94 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLT 94 (298)
T ss_pred hcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999777999999999999988864
No 95
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=74.05 E-value=1.8e+02 Score=34.12 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=49.0
Q ss_pred HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH
Q 000718 975 ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054 (1334)
Q Consensus 975 ~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~ 1054 (1334)
...+.++..+ .++++.+|..+...+|++.- +.-.+.+...|.|+++.||.+++..|..+ +..--+-.
T Consensus 43 ~~~~~~~~~l-~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~------~~~~a~~~ 109 (335)
T COG1413 43 EAADELLKLL-EDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGEL------GDPEAVPP 109 (335)
T ss_pred hhHHHHHHHH-cCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc------CChhHHHH
Confidence 4455555555 33356666666666665554 33445566666666666666666633322 22222234
Q ss_pred HHHHhc-CCChhHHHHHHHHHHHHhcc
Q 000718 1055 MAIRVE-DEDQRISNLAKLFFHELSKK 1080 (1334)
Q Consensus 1055 ~a~~l~-D~d~~I~~~a~~ff~eL~~K 1080 (1334)
+..+|. |+|..+|.-|-..+..+..+
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~~ 136 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGDE 136 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCch
Confidence 444555 56666666666555554444
No 96
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.87 E-value=57 Score=45.37 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=69.6
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcC-HHHHHHhHHHHHHHHhcCCC--hhhHhhHHHHhhhhhhccCc
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIID-ADYCDANLQLLFTVVESSPS--EIVRSNCTIALGDLAVRFPN 1009 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs-~~~c~~~l~ll~~~le~s~~--~~vR~N~vi~lgDL~~rfpn 1009 (1334)
.|-|+....|+.-.. ..+.+|-.++-+ +|-|+.+ +...+.- ...-.+=+...| ..||.=++|+.+|.....=+
T Consensus 297 ~~~~~~~~fl~r~~D--~~~~vR~~~v~~-~~~~l~~~~~~~~~~-~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~ 372 (1266)
T KOG1525|consen 297 TYDDLWSAFLGRFND--ISVEVRMECVES-IKQCLLNNPSIAKAS-TILLALRERDLDEDVRVRTQVVIVACDVMKFKLV 372 (1266)
T ss_pred cchHHHHHHHHHhcc--CChhhhhhHHHH-hHHHHhcCchhhhHH-HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhh
Confidence 456666666655333 356666555544 4444444 3332222 222222234444 56778888888888887777
Q ss_pred ccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc
Q 000718 1010 LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN 1043 (1334)
Q Consensus 1010 lve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~ 1043 (1334)
++-+-...+-.||+|.-..||++|++-|+.|-.+
T Consensus 373 ~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 373 YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6666677788899999999999999999999886
No 97
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.77 E-value=20 Score=42.69 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=79.3
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHH------hHHHHHHHHhcCCChhhHhhHHHHhhhhhhc
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDA------NLQLLFTVVESSPSEIVRSNCTIALGDLAVR 1006 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~------~l~ll~~~le~s~~~~vR~N~vi~lgDL~~r 1006 (1334)
.+.|++. ...+ .++.||+.|+-.+|..--=++ +|.. -++-|+.+|.++++-.+|++++.|++=|..-
T Consensus 125 gl~~ll~-~l~~-----~~~~lR~~Aa~Vigt~~qNNP-~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn 197 (342)
T KOG2160|consen 125 GLVPLLG-YLEN-----SDAELRELAARVIGTAVQNNP-KSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRN 197 (342)
T ss_pred CHHHHHH-HhcC-----CcHHHHHHHHHHHHHHHhcCH-HHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhc
Confidence 3445544 4444 678999999999998744333 3332 3588999998777778999999999999998
Q ss_pred cCcccccc-----hHHHhhhcCC--CCHHHHHHHHHHHHHHHHccccc
Q 000718 1007 FPNLLEPW-----TENMYARLKD--PSMAVRKNAVLVLSHLILNDMMK 1047 (1334)
Q Consensus 1007 fpnlve~~-----t~~ly~~L~D--~~~~VR~~~l~vlthLIl~dmiK 1047 (1334)
||--++.+ +.-|-..|.+ .++.+++-++..++.|+..++..
T Consensus 198 ~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 198 NKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred CcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 88877766 3445555656 67788888888888888776643
No 98
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=73.72 E-value=31 Score=43.59 Aligned_cols=147 Identities=12% Similarity=0.080 Sum_probs=98.1
Q ss_pred HhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccch-HHHHHHHHHhhhhhHHHhhHhHHHHHh
Q 000718 256 IHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAEN-IGRFLVELADRLPKLISTNIGVLILHF 334 (1334)
Q Consensus 256 L~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn-~s~FL~~Lae~~P~lvl~~is~L~~~L 334 (1334)
..-+.|.++.++..+.-.....+-+.+ .. +.-.++ ..+....|+ --.=|-.|+.+.|.++...++.+..+|
T Consensus 349 ~~~~~~~~~~~l~~l~~~i~~~g~p~~-~~-----~~~~~~--~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF 420 (501)
T PF13001_consen 349 SWIFKHISPQILKLLRPVILSQGWPLI-QD-----SSSQSN--SSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLF 420 (501)
T ss_pred hHHhhhcCHHHHHHHHHHHHhcCcccc-cc-----ccccCC--CcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHH
Confidence 345667776666666655444433322 00 011111 123333333 346688899999999999998888775
Q ss_pred ---CCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcch
Q 000718 335 ---GGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSI 411 (1334)
Q Consensus 335 ---d~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~ 411 (1334)
+++.--+|-+|-++++.+...+....+ +..... +..+..++.+...+....||..|++--..+.--.-+|-
T Consensus 421 ~sL~~~~~evr~sIqeALssl~~af~~~~~--~~~~~~----~~~~~~l~~~~~~~~~~~~R~~avk~an~~fpf~d~~a 494 (501)
T PF13001_consen 421 DSLEDESPEVRVSIQEALSSLAPAFKDLPD--DEDEQK----RLLLELLLLSYIQSEVRSCRYAAVKYANACFPFSDVPA 494 (501)
T ss_pred HHhhCcchHHHHHHHHHHHHHHHHHhcccc--chhHHH----HHHHHHHHHhhccchhHHHHHHHHHHHHHhCCccchHH
Confidence 578899999999999999876655443 111112 56677788888999999999999999888888777774
Q ss_pred hhHHHH
Q 000718 412 GLWNEV 417 (1334)
Q Consensus 412 ~~~~~v 417 (1334)
||.-+
T Consensus 495 -R~i~i 499 (501)
T PF13001_consen 495 -RYICI 499 (501)
T ss_pred -HHHHh
Confidence 44333
No 99
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=73.60 E-value=1e+02 Score=36.31 Aligned_cols=78 Identities=29% Similarity=0.331 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHH
Q 000718 339 YKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 418 (1334)
Q Consensus 339 Y~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~ 418 (1334)
+.+|.++++.+|.+- -......|.+++.|...+||.++...+..+...+ ..+.
T Consensus 163 ~~~r~~a~~~l~~~~--------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~ 215 (335)
T COG1413 163 LDVRAAAAEALGELG--------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAA 215 (335)
T ss_pred HHHHHHHHHHHHHcC--------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHH
Confidence 367888888777762 1234567788888888899999999999999876 3555
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHH
Q 000718 419 EVAAGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 419 ~~av~RL~DKSs~VRK~AiqLL~~l 443 (1334)
.....-+.|.+..||+.++..|..+
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhccc
Confidence 6677788999999999999987654
No 100
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=73.32 E-value=5.6 Score=30.51 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=18.5
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000718 418 AEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 418 ~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1334)
+.....-|.|++..||.+|+.-|..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445566777777777777777777654
No 101
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=72.47 E-value=2.9e+02 Score=35.59 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=93.0
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHH--HhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc----hHHHhhhcC
Q 000718 950 KYPELQASAMLALCRFMIIDADYCD--ANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW----TENMYARLK 1023 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~--~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~----t~~ly~~L~ 1023 (1334)
++...|.|..++.+ |=.++|- .-+|.|+.-. ..|...|.+-++=++|=|--+--+.--.| ||.+-..|.
T Consensus 777 qeRq~RvctsvaI~----iVae~cgpfsVlP~lm~dY-~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAlt 851 (975)
T COG5181 777 QERQQRVCTSVAIS----IVAEYCGPFSVLPTLMSDY-ETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALT 851 (975)
T ss_pred HHHHhhhhhhhhhh----hhHhhcCchhhHHHHHhcc-cCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 45667777776664 3345554 3367776666 56777788888888775544433332223 667777899
Q ss_pred CCCHHHHHHHHHHHHHHHHccccccchhHHH---HHH----HhcCCChhHHHHHHHHHHHHhcc-CCchhhhhhhHHHhh
Q 000718 1024 DPSMAVRKNAVLVLSHLILNDMMKVKGYINE---MAI----RVEDEDQRISNLAKLFFHELSKK-GNNPIYNLLPDILGK 1095 (1334)
Q Consensus 1024 D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~---~a~----~l~D~d~~I~~~a~~ff~eL~~K-~~n~iyn~~pdiis~ 1095 (1334)
|.|+.-|.++..|++||.|| ----|..-- +.- -+.||.|.+.+--.-...-+++- ++.++|+.+-.-++|
T Consensus 852 DrD~vhRqta~nvI~Hl~Ln--c~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv~qGLFH 929 (975)
T COG5181 852 DRDPVHRQTAMNVIRHLVLN--CPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYVQQGLFH 929 (975)
T ss_pred ccchHHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHhccC
Confidence 99999999999999999999 222233311 111 24577787776666666666664 667888888777776
Q ss_pred cc
Q 000718 1096 LC 1097 (1334)
Q Consensus 1096 Ls 1097 (1334)
=|
T Consensus 930 Ps 931 (975)
T COG5181 930 PS 931 (975)
T ss_pred ch
Confidence 55
No 102
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=72.45 E-value=41 Score=46.23 Aligned_cols=247 Identities=15% Similarity=0.199 Sum_probs=148.0
Q ss_pred HHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcC--CChhhHhhHHHHhhhhhhccCcc-cccch--HHHhhhcCCCCHHHH
Q 000718 956 ASAMLALCRFMIIDADYCDANLQLLFTVVESS--PSEIVRSNCTIALGDLAVRFPNL-LEPWT--ENMYARLKDPSMAVR 1030 (1334)
Q Consensus 956 ~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s--~~~~vR~N~vi~lgDL~~rfpnl-ve~~t--~~ly~~L~D~~~~VR 1030 (1334)
+++..+|||-.+ ..+.+.|..++-..++.+ .++.|-.-...++++.+.+.++. .++|. .-.--.+-|++..||
T Consensus 483 ~~~~~~lgr~AL--~nLL~~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR 560 (1120)
T PF14228_consen 483 SHARHSLGRRAL--KNLLEHNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIR 560 (1120)
T ss_pred chHHHHHHHHHH--HHHHHhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHH
Confidence 445556666443 344455666655555543 45678888999999999999886 55552 222236789999999
Q ss_pred HHHHHHHHHHHHccccccch-hHHHHHHHhcCCChhHHHHHHHHHH-HHhccCCchhhhhhhHHHhhccCCCCChhHHHH
Q 000718 1031 KNAVLVLSHLILNDMMKVKG-YINEMAIRVEDEDQRISNLAKLFFH-ELSKKGNNPIYNLLPDILGKLCNQNLKTESFCN 1108 (1334)
Q Consensus 1031 ~~~l~vlthLIl~dmiKvKg-~l~~~a~~l~D~d~~I~~~a~~ff~-eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~ 1108 (1334)
..|+.+|..|=..-+-.-.+ ....+-..+.++-+.+-..+..-.. .||+-.|..-|.+|-|+..+.-+ .++.+.-+.
T Consensus 561 ~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~~hPELs~~ifSEi~~R~~~-~~~~~~rr~ 639 (1120)
T PF14228_consen 561 SKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAKQHPELSFPIFSEISQRFFN-AVPPDARRD 639 (1120)
T ss_pred HHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHh-cCChhHHHH
Confidence 99999999887554422221 2345667788888888777776664 57777888899999998876321 344456678
Q ss_pred HHHHHHhhhhhhh--------hHH----HHHHHHHhhhhcc---cchHhHHHHHHHHhccCCChhHHHHHHHhHH--HHH
Q 000718 1109 IMQLLIGFIKKDK--------QME----ALVEKLCNRFSGV---TDIRQWEYISYCLSQLAFTEKGMKKLIESFK--TYE 1171 (1334)
Q Consensus 1109 i~kfLl~~i~Kdk--------q~e----~LveKLc~Rf~~~---~~~rqwrdiafcLslL~~~ek~ikKL~e~~~--~y~ 1171 (1334)
|+.+|++.|++=. ..+ +|.+ +-.||... +-+.-|.-++ + +.+.++.+++-+- +..
T Consensus 640 mL~~LlPWvqnleL~~~~~~g~s~~vL~nL~~-iT~k~~d~~~~Eve~lW~~L~---~----~~~N~~~il~FLi~~~le 711 (1120)
T PF14228_consen 640 MLAYLLPWVQNLELVSLPESGWSEMVLNNLFY-ITIKFGDDHPNEVEALWIALA---S----NPQNIRVILDFLIELGLE 711 (1120)
T ss_pred HHHHHHHHHhhceecccCCCCcHHHHHHHHHH-HHHHhccccHHHHHHHHHHHh---c----CcccHHHHHHHHHHHhhh
Confidence 9999999997410 011 1111 12222222 4566775544 1 2345566555442 111
Q ss_pred HhhC--chHHHHHHHHHHHHhhh----cCChhhhHHHHHHHHHHHHHh
Q 000718 1172 HALS--EDSVMDNFRNIINKSKK----FAKPEVKVCIEEFEEKLNKYH 1213 (1334)
Q Consensus 1172 dkL~--d~~V~~~F~~Ii~k~kk----~~k~e~K~~i~EfE~kl~~~~ 1213 (1334)
++=. +.++-..|...+.-+|+ .+..--++.|+|+=..|....
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~K~v~~yL~r~~p~~~id~Lv~el~~~~ 759 (1120)
T PF14228_consen 712 RCDQNASKEISVAFATLLPYAKRVVLYLARVSPQQMIDELVYELQQRD 759 (1120)
T ss_pred hccccchhhhhhhhhhhccccceeeEeeecCCHHHHHHHHHHHHHHhh
Confidence 1111 11222345555555666 233333577887776666553
No 103
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.12 E-value=56 Score=43.08 Aligned_cols=132 Identities=22% Similarity=0.245 Sum_probs=84.4
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCch----hHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000718 301 DTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESY----KIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1334)
Q Consensus 301 D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY----~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1334)
|+=.-=|+=.=++.|++..|.-|++ .|..+.++++- .+|--|=|++++++... .+. ..+.++.
T Consensus 781 dsyvyLnaI~gv~~Lcevy~e~il~---dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~---Gel-------~~~y~~~ 847 (982)
T KOG4653|consen 781 DSYVYLNAIRGVVSLCEVYPEDILP---DLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL---GEL-------VFKYKAV 847 (982)
T ss_pred CceeeHHHHHHHHHHHHhcchhhHH---HHHHHHHhcccCCCccceehHHHHHHHHHHHh---ccH-------HHHHHHH
Confidence 5544555556677888889998888 44554444331 24555558888876431 111 1223555
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHh
Q 000718 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSI-GLWNEVAEVAAGRL-EDKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 377 lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~-~~~~~v~~~av~RL-~DKSs~VRK~AiqLL~~lL~ 445 (1334)
++++-..=++|--.=-|..++-.+..||...+.-. .++.+++...+.=. -|.|++|||+|++|+..+|.
T Consensus 848 Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 848 LINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 66666665666544459999999999999765433 24444444332211 28999999999999999987
No 104
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.25 E-value=12 Score=40.90 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhH-HHHhhhhhhccCcccccchHHHhhhcCCCCHHHH
Q 000718 952 PELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNC-TIALGDLAVRFPNLLEPWTENMYARLKDPSMAVR 1030 (1334)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~-vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR 1030 (1334)
...+-.|++.+.+.- ..+-...++.+-..+..-++..+--.+ .-++|.+...+ +...+.++.-++++++-+|
T Consensus 65 ~E~~~la~~il~~~~---~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----~~~~~~~~~W~~s~~~w~r 137 (213)
T PF08713_consen 65 REERYLALLILDKRR---KKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----PEALELLEKWAKSDNEWVR 137 (213)
T ss_dssp HHHHHHHHHHHHHCG---GG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH----GGHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhHHHh---hhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh----HHHHHHHHHHHhCCcHHHH
Confidence 456777777776643 223334678888888777777555554 55567776666 6678899999999999999
Q ss_pred HHHHHHHHHHHHccccccchhHHHH-HHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhH
Q 000718 1031 KNAVLVLSHLILNDMMKVKGYINEM-AIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPD 1091 (1334)
Q Consensus 1031 ~~~l~vlthLIl~dmiKvKg~l~~~-a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pd 1091 (1334)
|.++.++.+++..+.. ..+.++ ..++.|++.-|+.-.--++.++++++|..+-..+-.
T Consensus 138 R~~~v~~~~~~~~~~~---~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 138 RAAIVMLLRYIRKEDF---DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHHCTTTHGGGCHH---HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH---HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999998888877222 244444 456889999999888889999999996655444433
No 105
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.18 E-value=25 Score=40.63 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=86.6
Q ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC
Q 000718 329 VLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS 408 (1334)
Q Consensus 329 ~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~ 408 (1334)
.|-++|.++.-..|.--++.+++++...-.+ .+ .+++ ...+++-+.+|+-|... +... |+.+..|+..+.
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~-~L---~~~e----v~~L~~F~~~rl~D~~~-~~~~-l~gl~~L~~~~~ 72 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD-FL---SRQE----VQVLLDFFCSRLDDHAC-VQPA-LKGLLALVKMKN 72 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh-hc---cHHH----HHHHHHHHHHHhccHhh-HHHH-HHHHHHHHhCcC
Confidence 4678899999999999999999998664322 12 1223 67899999999966544 6665 999999999888
Q ss_pred cchhhHHHHHHHHHhh--ccCCchhHHHHHHHHHHHHHhhCC
Q 000718 409 VSIGLWNEVAEVAAGR--LEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 409 iP~~~~~~v~~~av~R--L~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
+|......+++..... ++-....+|....++|..++.+|+
T Consensus 73 ~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~ 114 (262)
T PF14500_consen 73 FSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR 114 (262)
T ss_pred CChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH
Confidence 8887877888877764 445677899999999999999865
No 106
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.78 E-value=1.3e+02 Score=40.13 Aligned_cols=219 Identities=13% Similarity=0.115 Sum_probs=139.7
Q ss_pred chhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHh-----hccchhhhHHHHHHHHhhcccchHHHHHHHHHHHH
Q 000718 201 DENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACAT-----KYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEK 275 (1334)
Q Consensus 201 ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk-----~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~ 275 (1334)
+++-..+|.--+..-.+++.+.-..+.+...+.++++..| +|-.+..+..+++.+|.. +.+..+.|++...+..
T Consensus 764 ~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~-~~~g~~aa~~fsiim~ 842 (1030)
T KOG1967|consen 764 EEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLLSG-PSTGSPAAKLFSIIMS 842 (1030)
T ss_pred cHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhcCC-ccccchHHHhhHhhhc
Confidence 3444444544455555555555555666666666654433 334455677889998877 5666788888877664
Q ss_pred H-------cCCc------------hhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHH-hhHhHH----H
Q 000718 276 K-------YADG------------SLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLIS-TNIGVL----I 331 (1334)
Q Consensus 276 ~-------~~~~------------~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl-~~is~L----~ 331 (1334)
. +++. +++..+++-|. . .+...--+|=.-|..+-.+.|+-++ +++..| +
T Consensus 843 D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~-t------~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLL 915 (1030)
T KOG1967|consen 843 DSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFE-T------APGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLL 915 (1030)
T ss_pred cChHHhhhccccchhHHHHHHHHHhhHHHHHHHhc-c------CCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHH
Confidence 2 2222 22222333222 1 1222233566677777778887554 776554 5
Q ss_pred HHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHH--HcCCCC-chhhHHHHHHHHHHHh---
Q 000718 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLE--RCRDVS-AYTRSRVLQVWAELCE--- 405 (1334)
Q Consensus 332 ~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~e--R~~D~n-~yVRskvLQ~~~~L~e--- 405 (1334)
+.|+.+.-..|-+.++++--.+... +.+-.+ . -+.++-.|.. +=+|-| .-||=-|||++..|-+
T Consensus 916 q~Ls~~D~~v~vstl~~i~~~l~~~---~tL~t~---~----~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P 985 (1030)
T KOG1967|consen 916 QALSMPDVIVRVSTLRTIPMLLTES---ETLQTE---H----LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLP 985 (1030)
T ss_pred HhcCCCccchhhhHhhhhhHHHHhc---cccchH---H----HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCC
Confidence 5578999999999999988776432 111111 1 4556655554 444544 7799999999999998
Q ss_pred -cCCcchhhHHHHHHHHHhhccCCchhHHHHHHHH
Q 000718 406 -EHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNL 439 (1334)
Q Consensus 406 -~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqL 439 (1334)
....| ++..|++..+--|.||--.|||.|+.-
T Consensus 986 ~~~l~~--fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 986 TKSLLS--FRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred Cccccc--ccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 23444 556999999999999999999999975
No 107
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.48 E-value=16 Score=47.06 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.|.++|++|+++||=.||-|.+-|-. .+..|..|-+|-||.-+-++||=.|- =+-+-+ -+.-|=....|+...|
T Consensus 567 ~nDDVrRaAVialGFVl~~dp~~~~s----~V~lLses~N~HVRyGaA~ALGIaCA-GtG~~e-Ai~lLepl~~D~~~fV 640 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFRDPEQLPS----TVSLLSESYNPHVRYGAAMALGIACA-GTGLKE-AINLLEPLTSDPVDFV 640 (929)
T ss_pred cchHHHHHHHHHheeeEecChhhchH----HHHHHhhhcChhhhhhHHHHHhhhhc-CCCcHH-HHHHHhhhhcChHHHH
Confidence 56789999999999999999988754 55566788899999999999995543 222211 1333444567999999
Q ss_pred HHHHHHHHHHH
Q 000718 1030 RKNAVLVLSHL 1040 (1334)
Q Consensus 1030 R~~~l~vlthL 1040 (1334)
|+-|+.-+.-.
T Consensus 641 RQgAlIa~amI 651 (929)
T KOG2062|consen 641 RQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHH
Confidence 99998766543
No 108
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=68.90 E-value=39 Score=42.51 Aligned_cols=106 Identities=17% Similarity=0.242 Sum_probs=68.2
Q ss_pred HhHHHHHHHHhcCCChhhHhhHHHHhhhhhh----ccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccch
Q 000718 975 ANLQLLFTVVESSPSEIVRSNCTIALGDLAV----RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKG 1050 (1334)
Q Consensus 975 ~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~----rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg 1050 (1334)
+-+.|||++||+.+...+---+..++|-|.. ||---++.+.|+|.+-|+-.+..|--+++-.+
T Consensus 597 ~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglv------------- 663 (858)
T COG5215 597 QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLV------------- 663 (858)
T ss_pred HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHH-------------
Confidence 4578888999888666777778888888877 88888888899999999888777766666443
Q ss_pred hHHHHHHHhcCCChhHHHHHHHHHHHHhcc--CCchhhhhhhHHHhhccC
Q 000718 1051 YINEMAIRVEDEDQRISNLAKLFFHELSKK--GNNPIYNLLPDILGKLCN 1098 (1334)
Q Consensus 1051 ~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K--~~n~iyn~~pdiis~Ls~ 1098 (1334)
+++|..|. ..+.-+|--|-+.|.+- ++++=-++=|-|+|.++|
T Consensus 664 --gdlantl~---~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgD 708 (858)
T COG5215 664 --GDLANTLG---TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGD 708 (858)
T ss_pred --HHHHHHhh---hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHH
Confidence 44444442 22444444444444432 223444444555555543
No 109
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.78 E-value=4.5e+02 Score=37.46 Aligned_cols=254 Identities=20% Similarity=0.228 Sum_probs=166.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH---hcCCChhhHhhHHHHhhhhhhccCccc-----ccchHHH
Q 000718 947 LMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV---ESSPSEIVRSNCTIALGDLAVRFPNLL-----EPWTENM 1018 (1334)
Q Consensus 947 ~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~l---e~s~~~~vR~N~vi~lgDL~~rfpnlv-----e~~t~~l 1018 (1334)
+|+.++.+|.+-+---.=+..=|+..-++++.-++..| -++..+.||.-.-.||.||.-+.|+-- -.+-..+
T Consensus 1007 ~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~ 1086 (1702)
T KOG0915|consen 1007 QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAA 1086 (1702)
T ss_pred ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 34455667765443333333333556666666666555 267789999999999999999999731 1223457
Q ss_pred hhhcCCCCHHHHHHH---HHHHHHHHHc--cc---cccchhHHHHHHHhcCCC-----hhHHHHHHHHHHHHhccCCchh
Q 000718 1019 YARLKDPSMAVRKNA---VLVLSHLILN--DM---MKVKGYINEMAIRVEDED-----QRISNLAKLFFHELSKKGNNPI 1085 (1334)
Q Consensus 1019 y~~L~D~~~~VR~~~---l~vlthLIl~--dm---iKvKg~l~~~a~~l~D~d-----~~I~~~a~~ff~eL~~K~~n~i 1085 (1334)
|+-.-|--..||+-+ ..+|+-|+-. |- .|-|--+.-+.=||.|+- ++||.++-.-...|++-.+..|
T Consensus 1087 fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l 1166 (1702)
T KOG0915|consen 1087 FRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL 1166 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh
Confidence 888888889999875 4455555432 22 222233455666888875 7888888888888988877888
Q ss_pred hhhhhHHHhhccCC-----------------CCChh-------------HHHHHHHHHHhhhhhhhhHHHHHHHHHhhhh
Q 000718 1086 YNLLPDILGKLCNQ-----------------NLKTE-------------SFCNIMQLLIGFIKKDKQMEALVEKLCNRFS 1135 (1334)
Q Consensus 1086 yn~~pdiis~Ls~~-----------------~~~~~-------------~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~ 1135 (1334)
--++|+.|--|-+- +.+.+ -....+.-++.||+ +--.|.|+.++|+=.+
T Consensus 1167 kP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R 1245 (1702)
T KOG0915|consen 1167 KPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVR 1245 (1702)
T ss_pred cchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHh
Confidence 88888887666321 11111 22346678899995 4578999999999998
Q ss_pred cccchHhHHHHHH--------HHh-ccCCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHhhhcCChh-hhHHHHHH
Q 000718 1136 GVTDIRQWEYISY--------CLS-QLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPE-VKVCIEEF 1205 (1334)
Q Consensus 1136 ~~~~~rqwrdiaf--------cLs-lL~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~k~e-~K~~i~Ef 1205 (1334)
+.-.------.|- |.+ .=||+.|-++-+ |+-++| ..+.|..+|-+-+.+.=|+.+|+ .+..++++
T Consensus 1246 ~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al---~~g~~d--RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~ 1320 (1702)
T KOG0915|consen 1246 GSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRAL---FPGAKD--RNESVRKAFASAMGYLAKFSSPDQMQKLIETL 1320 (1702)
T ss_pred ccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHH---hhcccc--ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 8621100000011 222 347888777664 566667 89999999999999999988884 44455544
Q ss_pred H
Q 000718 1206 E 1206 (1334)
Q Consensus 1206 E 1206 (1334)
-
T Consensus 1321 l 1321 (1702)
T KOG0915|consen 1321 L 1321 (1702)
T ss_pred H
Confidence 3
No 110
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=64.54 E-value=1e+02 Score=40.84 Aligned_cols=151 Identities=15% Similarity=0.206 Sum_probs=100.2
Q ss_pred HHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccc-cchHHHhhhcCCCC-----HHHHHHHHHHHHHHHHc
Q 000718 970 ADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLE-PWTENMYARLKDPS-----MAVRKNAVLVLSHLILN 1043 (1334)
Q Consensus 970 ~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve-~~t~~ly~~L~D~~-----~~VR~~~l~vlthLIl~ 1043 (1334)
+.|-++++.-|++.+..-....|..++==+-..+.-.-|.-.. .-.--+|.+|..|. +.+|..=-.++..+...
T Consensus 33 ~~~~~e~V~~f~~~l~~wd~~rI~~~L~~~~~~~~~~~~~~~~~~~~~aiyE~L~~p~lLr~~~~l~~~F~~~f~~~~~~ 112 (727)
T PF12726_consen 33 ESFPEENVDQFFNMLDNWDIQRILPGLDKAKSILESIEPMTRSRALLLAIYECLCNPALLRDDEELRELFDAIFSSLQSK 112 (727)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccchHHHHHHHHHhCHHHHcCcHHHHHHHHHHHHHHhcc
Confidence 6777788888888885555444444433333332222221111 13356787777653 44666656688888888
Q ss_pred ccccc-chhHHHHHHHhcCCChhHHHHHHHHHHHHhccC---C-----chhhhhhhHHHhhccCCCC---ChhHHHHHHH
Q 000718 1044 DMMKV-KGYINEMAIRVEDEDQRISNLAKLFFHELSKKG---N-----NPIYNLLPDILGKLCNQNL---KTESFCNIMQ 1111 (1334)
Q Consensus 1044 dmiKv-Kg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~---~-----n~iyn~~pdiis~Ls~~~~---~~~~f~~i~k 1111 (1334)
+-+++ ++.+--|..+|.|+++..+.-|+..+..+..+. + .++...|...+.+++.... .-..|..-+.
T Consensus 113 ~~~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~ 192 (727)
T PF12726_consen 113 KPLKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFS 192 (727)
T ss_pred CCccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHH
Confidence 99998 888888999999999999999999999987752 1 2445555555555632222 2336888899
Q ss_pred HHHhhhhhh
Q 000718 1112 LLIGFIKKD 1120 (1334)
Q Consensus 1112 fLl~~i~Kd 1120 (1334)
.++.++++|
T Consensus 193 ~Il~~ld~~ 201 (727)
T PF12726_consen 193 LILRLLDKE 201 (727)
T ss_pred HHHHHccHH
Confidence 999999876
No 111
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.79 E-value=4.6e+02 Score=34.53 Aligned_cols=281 Identities=14% Similarity=0.135 Sum_probs=153.2
Q ss_pred hHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHH--HcCCCCchhhHHHHHHHHHHHh
Q 000718 328 GVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLE--RCRDVSAYTRSRVLQVWAELCE 405 (1334)
Q Consensus 328 s~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~e--R~~D~n~yVRskvLQ~~~~L~e 405 (1334)
..+..-|-+..-+-=|--+.++|||= +|+. +..|-+-+.. +--|...|||.|+-=++.+|..
T Consensus 114 n~iknDL~srn~~fv~LAL~~I~niG------------~re~----~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r 177 (938)
T KOG1077|consen 114 NSIKNDLSSRNPTFVCLALHCIANIG------------SREM----AEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFR 177 (938)
T ss_pred HHHHhhhhcCCcHHHHHHHHHHHhhc------------cHhH----HHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHh
Confidence 34555566655566677788888872 1122 3333333331 3358889999999999999998
Q ss_pred c--CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChhHHHHHHHHHHHHhcccCCCCCCCcccC
Q 000718 406 E--HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKKLNGLEPDIHSESITD 483 (1334)
Q Consensus 406 ~--~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~~~~~~Le~~~~~L~~l~~~~~~~~~~~ 483 (1334)
. ..+|..-| ++..+.=|.|.---|-=+|..|+..+..+||=.. ...+-....+|..+.-....+-.+-
T Consensus 178 ~spDl~~~~~W---~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-------k~~~~~avs~L~riv~~~~t~~qdY 247 (938)
T KOG1077|consen 178 KSPDLVNPGEW---AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-------KTCLPLAVSRLSRIVVVVGTSLQDY 247 (938)
T ss_pred cCccccChhhH---HHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-------hhhHHHHHHHHHHHHhhcccchhhc
Confidence 5 67776433 5555666888888899999999999999998432 2222222233322210000000000
Q ss_pred C-------C---CCCC--CCcCCCCCccchhhHHhHHhhhhhcccCCCCCcccccccCCCCCCCchhhHHHHHHHHHHHH
Q 000718 484 G-------L---PSDR--GTCNGDGEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQTRALVASLEA 551 (1334)
Q Consensus 484 ~-------~---~~~~--~~l~~~~e~e~~~~ee~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~~v~yl~d 551 (1334)
. + .... +.+... |+ ..... .+.+-.+.+-. +.+ ..+.....++-.+.-+-|=+
T Consensus 248 Tyy~vP~PWL~vKl~rlLq~~p~~-~D-~~~r~-~l~evl~~iLn----------k~~--~~~~~k~vq~~na~naVLFe 312 (938)
T KOG1077|consen 248 TYYFVPAPWLQVKLLRLLQIYPTP-ED-PSTRA-RLNEVLERILN----------KAQ--EPPKSKKVQHSNAKNAVLFE 312 (938)
T ss_pred eeecCCChHHHHHHHHHHHhCCCC-CC-chHHH-HHHHHHHHHHh----------ccc--cCccccchHhhhhHHHHHHH
Confidence 0 0 0000 000000 00 00000 00000000000 000 01223333333343445556
Q ss_pred HHHHH-------HHHHhHHHHHHHHhcCCCch---hHHHHHHHHHHHhhccCcchHHHHhhhcchhc-----ccCccHHH
Q 000718 552 GLRFS-------KCVSSTMPTLVQLMASSSAS---DVENTILLLMRCKQFQIDGAEACLHKMLPLVL-----SQDKSIYE 616 (1334)
Q Consensus 552 al~Fi-------~~i~~al~~i~~LL~Sk~~s---DV~EaI~Ff~~a~~f~I~~a~~girkML~LVW-----skd~~V~~ 616 (1334)
|+.|+ +.+..|+..++++|.++-.+ =.+|+|-.+..+ +.+.+++|+=..+|. .+|.|||.
T Consensus 313 aI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-----~~s~davK~h~d~Ii~sLkterDvSirr 387 (938)
T KOG1077|consen 313 AISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-----EFSIDAVKKHQDTIINSLKTERDVSIRR 387 (938)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-----cchHHHHHHHHHHHHHHhccccchHHHH
Confidence 77766 45778899999999888654 245555555554 566777777766665 45788998
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhhcCcchhhHHHHHH
Q 000718 617 AVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIV 657 (1334)
Q Consensus 617 ~vi~ay~~Ly~~~~~~~ia~nLi~L~~~at~~dl~sLEeLl 657 (1334)
.+++-.-.+.=..++..|+.-|+.-+.. +|..-=|+++
T Consensus 388 ravDLLY~mcD~~Nak~IV~elLqYL~t---Ad~sireeiv 425 (938)
T KOG1077|consen 388 RAVDLLYAMCDVSNAKQIVAELLQYLET---ADYSIREEIV 425 (938)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHhh---cchHHHHHHH
Confidence 8887665554444588888888887775 4444444443
No 112
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=62.74 E-value=3.4e+02 Score=32.71 Aligned_cols=208 Identities=12% Similarity=0.135 Sum_probs=128.1
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCch---hHHHHHHHHhhcCCCccccC
Q 000718 225 ADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGS---LATYLIREIGRTNPKAYVKD 301 (1334)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~---l~~~ilrEI~~~~~~~~~~D 301 (1334)
-+.|..+..|++.+.++.--.-..++ + +++..+..+.+..|...|+.+. ..+.||||-.+-+
T Consensus 90 fEsrKdv~~if~~llr~~~~~~~~p~--v------~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e------- 154 (335)
T PF08569_consen 90 FESRKDVAQIFSNLLRRQIGSRSPPT--V------DYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHE------- 154 (335)
T ss_dssp HHHHHHHHHHHHHHHT--BTTB--HH--H------HHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSH-------
T ss_pred CcccccHHHHHHHHHhhccCCCCCch--H------HHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhH-------
Confidence 35666777888777777533322111 1 2222333477777888888765 4578999986543
Q ss_pred ccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHH
Q 000718 302 TVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEIL 381 (1334)
Q Consensus 302 ~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L 381 (1334)
.++.++-. . +++..+..+.++.++.+=......+-.++...- ..-.+. ...+-|.|++..
T Consensus 155 -----~l~~~iL~----~-----~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk---~~~a~f---l~~n~d~ff~~~ 214 (335)
T PF08569_consen 155 -----SLAKIILY----S-----ECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK---KLVAEF---LSNNYDRFFQKY 214 (335)
T ss_dssp -----HHHHHHHT----S-----GGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH---HHHHHH---HHHTHHHHHHHH
T ss_pred -----HHHHHHhC----c-----HHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH---HHHHHH---HHHHHHHHHHHH
Confidence 22333222 1 256668889999999998888888888765311 010000 233478888865
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHhcCCc-ch-hhH---HHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCCCCCChh
Q 000718 382 LERCRDVSAYTRSRVLQVWAELCEEHSV-SI-GLW---NEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIA 456 (1334)
Q Consensus 382 ~eR~~D~n~yVRskvLQ~~~~L~e~~~i-P~-~~~---~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~ 456 (1334)
..=+.-.|-.+|-.+|+.+..|...+.- .. .+| ..-+.+...=|.|||-++|=-|.+.+.-++.+ |-. ..
T Consensus 215 ~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p~K----~~ 289 (335)
T PF08569_consen 215 NKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-PNK----PP 289 (335)
T ss_dssp HHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--SS-----BH
T ss_pred HHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-CCC----Ch
Confidence 5555556666799999999999986532 21 222 16778888889999999999999999988774 532 34
Q ss_pred HHHHHHHHHHHHhccc
Q 000718 457 SFEATLDEYRKKLNGL 472 (1334)
Q Consensus 457 ~~~~~Le~~~~~L~~l 472 (1334)
.+.+-|-+.+.+|-+.
T Consensus 290 ~I~~iL~~Nr~kLl~f 305 (335)
T PF08569_consen 290 PIVDILIKNREKLLRF 305 (335)
T ss_dssp HHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666666665443
No 113
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.23 E-value=18 Score=43.82 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcch-hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSI-GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~-~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1334)
|.--|.-|+-+..=.|+-||.-||+.+..+...+..-+ .+...++.....+..|.+++||..++||+..++..
T Consensus 56 k~ltlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~ 129 (393)
T KOG2149|consen 56 KGLTLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILP 129 (393)
T ss_pred ccccHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhh
Confidence 55567788889999999999999999999999843322 36668889999999999999999999999987663
No 114
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.67 E-value=35 Score=34.05 Aligned_cols=69 Identities=13% Similarity=0.116 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH---HHHHHHHh----h--ccCCchhHHHHHHHHHHHH
Q 000718 375 QAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN---EVAEVAAG----R--LEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 375 d~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~---~v~~~av~----R--L~DKSs~VRK~AiqLL~~l 443 (1334)
....+.|..|+.+.|+.|--+||.++..|+.++.-|..... .++...+. . =.|.+..||+.+.+|+...
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999865543211 22222111 1 1366899999999998753
No 115
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=56.52 E-value=1.1e+02 Score=33.03 Aligned_cols=129 Identities=20% Similarity=0.215 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhh-HhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHH
Q 000718 954 LQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIV-RSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKN 1032 (1334)
Q Consensus 954 l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~v-R~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~ 1032 (1334)
.+.+..++++.+-.. ......+..+-..++.-++..+ =.=+.-.+|-+-..+|++ +.++.-..++++-+||-
T Consensus 52 ~~~~~~lal~~~~~~--~~~~~~~~~~~~~i~~~~~W~~~D~~~~~~~~~~~~~~~~~-----~~~~~w~~s~~~~~rR~ 124 (197)
T cd06561 52 IREAQYLALDLLDKK--ELKEEDLERFEPWIEYIDNWDLVDSLCANLLGKLLYAEPEL-----DLLEEWAKSENEWVRRA 124 (197)
T ss_pred HHHHHHHHHHHHHHh--cCCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhcCcch-----HHHHHHHhCCcHHHHHH
Confidence 355555555554332 4555566666666765555432 222333445555556654 78888889999999999
Q ss_pred HHHHHHHHHHccccccchhHHH-HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhH
Q 000718 1033 AVLVLSHLILNDMMKVKGYINE-MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPD 1091 (1334)
Q Consensus 1033 ~l~vlthLIl~dmiKvKg~l~~-~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pd 1091 (1334)
++.++..++.++. --..+.+ +..++.|++.-|+...--++.++++++|..+.+.+=.
T Consensus 125 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 125 AIVLLLRLIKKET--DFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 9999999888811 1233344 4456666888888888889999999987776655544
No 116
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=56.41 E-value=6.7e+02 Score=35.16 Aligned_cols=261 Identities=14% Similarity=0.142 Sum_probs=141.4
Q ss_pred hHHHHHHHHHHHhccccccccCCCCcchhHHH----HHHHHHHHHhhccccc---cchhHHHHHHHHHHHHHhhccchhh
Q 000718 175 QRGRILNLIANSLEINLPLLFGSSDPDENYLS----FVVRNAFLMFENATLL---KDADTKDALCRIIGACATKYHYIEQ 247 (1334)
Q Consensus 175 qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~----l~~~~~y~lLE~~~~~---K~~~~r~~if~il~~~vk~y~h~~~ 247 (1334)
.+.++=..+.+++.+=.+.+|.....++..+. -|.+-..+.|++++.- .-+.+|-+++.++..++.......
T Consensus 258 Rrd~LR~ev~hVl~llAe~l~p~~l~~d~~L~~~lv~fIk~~~~fL~~~~~q~~~elQ~LR~~fc~ll~~l~~~~~~~~- 336 (1120)
T PF14228_consen 258 RRDRLRTEVTHVLRLLAEFLKPGVLNDDWILRNNLVEFIKETKQFLEDEEVQNDWELQRLRYHFCGLLRNLAVGIVKAK- 336 (1120)
T ss_pred hhhhHHHHHHHHHHHHHhhcChhhccchHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHhhhch-
Confidence 34554455777777766778877777766654 3455555656655433 445666666655544433321110
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCch---hHHHHHHHHhhcCC--CccccCccccchHHHHHHHHHhhhhhH
Q 000718 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGS---LATYLIREIGRTNP--KAYVKDTVGAENIGRFLVELADRLPKL 322 (1334)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~---l~~~ilrEI~~~~~--~~~~~D~~g~Kn~s~FL~~Lae~~P~l 322 (1334)
. +.+ -|+- =--+=.++..|+..++... -....-||+.+... .+=.+|+..-+++..-+.+=.+..-..
T Consensus 337 --s---e~f-pfe~-RkslF~l~~eWCGy~~~~~~~~~~s~~rre~~r~~~~~~~r~kd~~~~~~~~~~Ie~~~~~L~~a 409 (1120)
T PF14228_consen 337 --S---EWF-PFEA-RKSLFNLFEEWCGYSPSQWGQDGRSDYRREVERYKSSQLQREKDSRERATAEMEIEEQKRNLRTA 409 (1120)
T ss_pred --h---hcC-CHHH-HHHHHHHHHHHhhhhcccccccchhhHHHHHHHHHHHHHhhhccchhhhHHHHHHHHHHHHHHHH
Confidence 0 111 1110 0111123334443332210 11234454432110 010256666667776666655555555
Q ss_pred HHhhHhHHH--HHhCCCchhHHHHHHHHHHHHHHHHhc--------------------Ccccc-----cc----------
Q 000718 323 ISTNIGVLI--LHFGGESYKIRNALVGVLGKLVAKAFK--------------------DIEGE-----AS---------- 365 (1334)
Q Consensus 323 vl~~is~L~--~~Ld~esY~lRnavve~ig~ii~~~l~--------------------~~~~~-----~~---------- 365 (1334)
-+..|+.|. |.+|.....+---++..|.-|+..... |+..- +.
T Consensus 410 Al~AMAaLc~GPif~~~~~~~~grmlsWId~if~s~s~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 489 (1120)
T PF14228_consen 410 ALSAMAALCGGPIFDDNASKPSGRMLSWIDSIFNSPSDRMPIGYSPLDPRTMSYSKHAGEGPRGATGRDKQKSSHARHSL 489 (1120)
T ss_pred HHHHHHHHhcCCccccchhcccchHHHHHHHHHcCCCCCCcCCCCCCCccCcccccccCcccccccchhhhccchHHHHH
Confidence 555565554 445544445545566666666643111 00000 00
Q ss_pred hhhh---hhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000718 366 SKSV---RLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1334)
Q Consensus 366 ~k~~---~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1334)
++.. .+..-..+++...+|++-.++-|-..-..++..++-..-.|.-.+.+++.++.=-+-|.+.-||..|++||..
T Consensus 490 gr~AL~nLL~~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~eIR~~A~qLL~~ 569 (1120)
T PF14228_consen 490 GRRALKNLLEHNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESSEIRSKAMQLLRA 569 (1120)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcHHHHHHHHHHHHH
Confidence 0100 0111223778888899988887777777788888865555433445899999999999999999999999988
Q ss_pred H
Q 000718 443 M 443 (1334)
Q Consensus 443 l 443 (1334)
+
T Consensus 570 L 570 (1120)
T PF14228_consen 570 L 570 (1120)
T ss_pred H
Confidence 6
No 117
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=55.17 E-value=68 Score=40.98 Aligned_cols=130 Identities=22% Similarity=0.246 Sum_probs=87.6
Q ss_pred HHHHhcCCcCCCCChHHHHHHHHHHHHH---hhcCHHHH-----HHhHHHHHHHHhc---CCChhhHhhHHHHhhhhhhc
Q 000718 938 LSKFCRNFSLMNKYPELQASAMLALCRF---MIIDADYC-----DANLQLLFTVVES---SPSEIVRSNCTIALGDLAVR 1006 (1334)
Q Consensus 938 V~~iC~~~~~~~~~~~l~~~A~l~L~K~---m~vs~~~c-----~~~l~ll~~~le~---s~~~~vR~N~vi~lgDL~~r 1006 (1334)
+..+|.++... +++.|+.+|+++++-+ -|++..-| ++-+|-|...|.. ..+...+--.+=|||-+..
T Consensus 398 l~~l~~~~~~~-~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~- 475 (574)
T smart00638 398 LFELAESPEVQ-KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH- 475 (574)
T ss_pred HHHHhcCcccc-ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-
Confidence 34567776555 6788999999988855 34444444 3555666666654 3455567778889997765
Q ss_pred cCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHH
Q 000718 1007 FPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKL 1072 (1334)
Q Consensus 1007 fpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ 1072 (1334)
|+.+..-.+.+. .=.+.++.+|-.|+.-|-++.-..==++++.+..+.. =.+++++||-.|=.
T Consensus 476 -~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~-n~~e~~EvRiaA~~ 538 (574)
T smart00638 476 -PSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL-NRAEPPEVRMAAVL 538 (574)
T ss_pred -hhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc-CCCCChHHHHHHHH
Confidence 888777777776 3355678999999999998877676677777765542 22345666666533
No 118
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=54.99 E-value=1.6e+02 Score=32.88 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhh-HhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHH
Q 000718 953 ELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIV-RSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRK 1031 (1334)
Q Consensus 953 ~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~v-R~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~ 1031 (1334)
..|-.|+.-|.+. ...++...++.+-..+.+-.+..+ =+=+-.++|.+..++|.+ .+.++.-..|++.-+||
T Consensus 61 E~r~~al~~l~~~---~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s~~~W~rR 133 (208)
T cd07064 61 EYQYVAIDLLRKY---KKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTDENFWLRR 133 (208)
T ss_pred HHHHHHHHHHHHH---HhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcCCcHHHHH
Confidence 5777777666663 234556668888888877665533 322334446666666654 57888889999999999
Q ss_pred HHHHHHHHHHHccccccchhHHHHH-HHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHh
Q 000718 1032 NAVLVLSHLILNDMMKVKGYINEMA-IRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILG 1094 (1334)
Q Consensus 1032 ~~l~vlthLIl~dmiKvKg~l~~~a-~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis 1094 (1334)
.|+...-..+.+ ... ..+..++ .++.|++--|+...-=.+.|+++++|..+.+.+-+-..
T Consensus 134 ~ai~~~l~~~~~--~~~-~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl~~~~~ 194 (208)
T cd07064 134 TAILHQLKYKEK--TDT-DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFVAAHKL 194 (208)
T ss_pred HHHHHHHHHHHc--cCH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHHHHhhh
Confidence 998754433333 222 2344444 46667776777666778999999998888777655433
No 119
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=54.63 E-value=8.1 Score=39.62 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=38.8
Q ss_pred HhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000718 999 ALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1334)
Q Consensus 999 ~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1334)
=++.++..-|+-...-.++|..+|.|.++.|+.-||.+|-||+.+|
T Consensus 24 Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G 69 (122)
T cd03572 24 EIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG 69 (122)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC
Confidence 3455666656666677899999999999999999999999999987
No 120
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=53.46 E-value=1.3e+02 Score=34.79 Aligned_cols=149 Identities=17% Similarity=0.256 Sum_probs=88.0
Q ss_pred cCCChhhHhhHHHHhhhhhhccCc------ccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHh
Q 000718 986 SSPSEIVRSNCTIALGDLAVRFPN------LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRV 1059 (1334)
Q Consensus 986 ~s~~~~vR~N~vi~lgDL~~rfpn------lve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l 1059 (1334)
+++++.+|...+-.|+....+.|. -|.--+.++..+|.|. ..|.-. +.-|..|+ .|-.+.+..
T Consensus 9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~--~~~~~~~~~------- 77 (262)
T PF14500_consen 9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALV--KMKNFSPES------- 77 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHH--hCcCCChhh-------
Confidence 788999999999999999999983 2333467778899655 445444 88888887 444443322
Q ss_pred cCCChhHHHHHHHHHHH-----HhccCCchhhhhhhHHHhhccCC--CCChhHHHHHHHHHHhhhhhhhh------HHHH
Q 000718 1060 EDEDQRISNLAKLFFHE-----LSKKGNNPIYNLLPDILGKLCNQ--NLKTESFCNIMQLLIGFIKKDKQ------MEAL 1126 (1334)
Q Consensus 1060 ~D~d~~I~~~a~~ff~e-----L~~K~~n~iyn~~pdiis~Ls~~--~~~~~~f~~i~kfLl~~i~Kdkq------~e~L 1126 (1334)
+..+++.+|.+ +.++.--.+|+++--++.+-... .+. ...+.-+++.|+.||. ...|
T Consensus 78 ------~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~----~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 78 ------AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG----DDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred ------HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch----hHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33444444432 22222134555554444432210 111 1234444455554443 6677
Q ss_pred HHHHHhhhhcccchHhHHHHHHHHhccCC
Q 000718 1127 VEKLCNRFSGVTDIRQWEYISYCLSQLAF 1155 (1334)
Q Consensus 1127 veKLc~Rf~~~~~~rqwrdiafcLslL~~ 1155 (1334)
...+++.|.......+-=|+.+|-==+.|
T Consensus 148 ~~~i~~~~~~~~~~e~lFd~~~cYFPI~F 176 (262)
T PF14500_consen 148 LKVILQEFDISEFAEDLFDVFSCYFPITF 176 (262)
T ss_pred HHHHHHhcccchhHHHHHHHhhheeeeee
Confidence 77888888876667777777777655544
No 121
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=52.15 E-value=7.1e+02 Score=34.84 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=144.1
Q ss_pred cccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccc--hhhhHHHHHHHHhh------cccchH
Q 000718 193 LLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHY--IEQSCASIMHLIHK------YDFVVV 264 (1334)
Q Consensus 193 ~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h--~~~~~~~IiqlL~~------~ehl~~ 264 (1334)
+...+-..+|.-+..++=...+++++|.--=...--.++.++|+. |+.... +.-|+-=|+=.|++ -.|+-.
T Consensus 448 ~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRi 526 (1431)
T KOG1240|consen 448 QELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRI 526 (1431)
T ss_pred HHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhhHhhhccCccceehh
Confidence 345666778889999999999999999532122223345666643 555443 33344434433332 223445
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHhhc---CCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhH
Q 000718 265 HMADAVAGAEKKYADGSLATYLIREIGRT---NPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKI 341 (1334)
Q Consensus 265 ~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~---~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~l 341 (1334)
..|..+..+++.-. . +-+.-.++.+. +..+ .++.+--++-.-+..|-.-+-. .+..+|-.+.-.+
T Consensus 527 ayAsnla~LA~tA~-r--Fle~~q~~~~~g~~n~~n--set~~~~~~~~~~~~L~~~V~~-------~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 527 AYASNLAQLAKTAY-R--FLELTQELRQAGMLNDPN--SETAPEQNYNTELQALHHTVEQ-------MVSSLLSDSPPIV 594 (1431)
T ss_pred hHHhhHHHHHHHHH-H--HHHHHHHHHhcccccCcc--cccccccccchHHHHHHHHHHH-------HHHHHHcCCchHH
Confidence 67777777665421 1 11222333222 2221 3455555555555544332222 2233444555667
Q ss_pred HHHHHHHHHHHHHHHhcCcc------------c---ccchhhh------------hhhh-HHHHHHHHHHHcCCCCchhh
Q 000718 342 RNALVGVLGKLVAKAFKDIE------------G---EASSKSV------------RLRT-KQAMLEILLERCRDVSAYTR 393 (1334)
Q Consensus 342 Rnavve~ig~ii~~~l~~~~------------~---~~~~k~~------------~~~~-rd~lld~L~eR~~D~n~yVR 393 (1334)
|.|++|.|+.+=. .+-.+. + |..-|.. +.|+ -+-++=+|+.=+-|--.+|=
T Consensus 595 kr~Lle~i~~LC~-FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Vi 673 (1431)
T KOG1240|consen 595 KRALLESIIPLCV-FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVI 673 (1431)
T ss_pred HHHHHHHHHHHHH-HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhH
Confidence 7788887766532 111111 1 1111110 1222 24467788888999999999
Q ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000718 394 SRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 394 skvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1334)
.+||+.+.-||+.+-+-+....++++.+.-=|--.+.-||+.++..|.+...
T Consensus 674 v~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 674 VSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 9999999999999988877778899988888999999999999999988755
No 122
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=51.11 E-value=1e+02 Score=30.37 Aligned_cols=73 Identities=11% Similarity=0.162 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCch---hHHHHHHHHHHHHHhh
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSA---IVRKSALNLLVMMLQH 446 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs---~VRK~AiqLL~~lL~~ 446 (1334)
+..+...+....+|.+.=.|..+.+++.+||+.+.+....+..-.....+.+.|.+. .+..+--+++..++..
T Consensus 34 ~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~ 109 (113)
T smart00544 34 HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLISD 109 (113)
T ss_pred hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHHc
Confidence 778999999999999878899999999999999999888888888999999999877 5666666677766653
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=50.22 E-value=6.8e+02 Score=32.32 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=122.5
Q ss_pred hhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCC-
Q 000718 910 DTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSP- 988 (1334)
Q Consensus 910 d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~- 988 (1334)
+.|...++ ++. +..+..|+|.+++.-.+|+.+ -... +.+|++--.|..- -...+.+++-+|.+.-
T Consensus 317 ~~l~~~~s--vid-----N~dI~~~ip~Lld~l~dp~~~-~~e~-----~~~L~~ttFV~~V-~~psLalmvpiL~R~l~ 382 (569)
T KOG1242|consen 317 ETLLKFGS--VID-----NPDIQKIIPTLLDALADPSCY-TPEC-----LDSLGATTFVAEV-DAPSLALMVPILKRGLA 382 (569)
T ss_pred HHHHHHHH--hhc-----cHHHHHHHHHHHHHhcCcccc-hHHH-----HHhhcceeeeeee-cchhHHHHHHHHHHHHh
Confidence 44555554 444 667899999999998998866 3333 2333322221110 1144555555553332
Q ss_pred --ChhhHhhHHHHhhhhhhcc--CcccccchH----HHhhhcCCCCHHHHHHHHHHHHHHHH-ccccccchhHHHHHHHh
Q 000718 989 --SEIVRSNCTIALGDLAVRF--PNLLEPWTE----NMYARLKDPSMAVRKNAVLVLSHLIL-NDMMKVKGYINEMAIRV 1059 (1334)
Q Consensus 989 --~~~vR~N~vi~lgDL~~rf--pnlve~~t~----~ly~~L~D~~~~VR~~~l~vlthLIl-~dmiKvKg~l~~~a~~l 1059 (1334)
+..++-=.++..|-||.-- |+-++||.+ .+..-+.|+.|.||..+-..|.-|+- -|+.+..+-+.++.-.+
T Consensus 383 eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 383 ERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred hccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhh
Confidence 2345566777889999888 889999955 55567789999999999999976663 34555444444433333
Q ss_pred cCCChhH--HHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCC------hhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 000718 1060 EDEDQRI--SNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLK------TESFCNIMQLLIGFIKKDKQMEALVEKLC 1131 (1334)
Q Consensus 1060 ~D~d~~I--~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~------~~~f~~i~kfLl~~i~Kdkq~e~LveKLc 1131 (1334)
.++-... .-.|+..=..++.=+-.....++|+++..-+...+. .-.|-.++-+.++|. ..+..-.+++-+|
T Consensus 463 ~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~-~~~yi~~i~~~~~ 541 (569)
T KOG1242|consen 463 TSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQ-FQPYIHEILDEFL 541 (569)
T ss_pred ccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHH-hHHHHHHHHHHHH
Confidence 3222111 112222222233323256788899999888754222 112223444455554 3456777888888
Q ss_pred hhhhc
Q 000718 1132 NRFSG 1136 (1334)
Q Consensus 1132 ~Rf~~ 1136 (1334)
++...
T Consensus 542 k~~ad 546 (569)
T KOG1242|consen 542 KGLAD 546 (569)
T ss_pred HHhhh
Confidence 88763
No 124
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.81 E-value=50 Score=41.54 Aligned_cols=111 Identities=19% Similarity=0.202 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHH
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAV 1029 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~V 1029 (1334)
.|..+|+||+++||=.||-+... ++-....|..|-++-||+-..|+||=.|.---. .--++-+-+...|++..|
T Consensus 564 ~nDDVrRAAViAlGfvc~~D~~~----lv~tvelLs~shN~hVR~g~AvaLGiacag~G~--~~a~diL~~L~~D~~dfV 637 (926)
T COG5116 564 GNDDVRRAAVIALGFVCCDDRDL----LVGTVELLSESHNFHVRAGVAVALGIACAGTGD--KVATDILEALMYDTNDFV 637 (926)
T ss_pred CchHHHHHHHHheeeeEecCcch----hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc--HHHHHHHHHHhhCcHHHH
Confidence 67899999999999999887654 555666777888999999999999966542221 223566667778999999
Q ss_pred HHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhcc
Q 000718 1030 RKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKK 1080 (1334)
Q Consensus 1030 R~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K 1080 (1334)
|..|+.-+..... .|-.-=+|.++++-+.|-.-+-.|
T Consensus 638 RQ~AmIa~~mIl~--------------Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 638 RQSAMIAVGMILM--------------QCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHHHHHh--------------hcCcccChhHHHHHHHHHHHHhhh
Confidence 9998876654332 233333455555555555444444
No 125
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=49.79 E-value=81 Score=32.54 Aligned_cols=87 Identities=17% Similarity=0.071 Sum_probs=70.0
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcC---CChh
Q 000718 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVED---EDQR 1065 (1334)
Q Consensus 995 N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D---~d~~ 1065 (1334)
.+++.+||+.-.-++--..=...|=.+|+.++|.|+..||.+|=-|+.|.--.+..++ -++.+++.+ .++.
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 4677888888766666566678888999999999999999999999999877776555 257777765 4788
Q ss_pred HHHHHHHHHHHHhccC
Q 000718 1066 ISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1066 I~~~a~~ff~eL~~K~ 1081 (1334)
|+.-+..++..++.--
T Consensus 99 Vk~kil~ll~~W~~~f 114 (133)
T cd03561 99 VREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999888888887654
No 126
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=49.77 E-value=1.1e+02 Score=38.19 Aligned_cols=241 Identities=14% Similarity=0.222 Sum_probs=120.3
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc-CH----HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000718 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-DA----DYCDANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v-s~----~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgD 1002 (1334)
..++..+..++..+|+||+...=+-.+-. ++-+|-|+.|- +. .|.+.-+|.|-.+|.+.-.
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFE-si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~------------- 131 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFE-SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQ------------- 131 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHH-HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-T-------------
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHH-HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 56888899999999999985300112222 23344666663 33 5899999999999965422
Q ss_pred hhhccCcccccchHHHhhhc---CCCCH--HHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHH
Q 000718 1003 LAVRFPNLLEPWTENMYARL---KDPSM--AVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHEL 1077 (1334)
Q Consensus 1003 L~~rfpnlve~~t~~ly~~L---~D~~~--~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1334)
+++|+.|.-| -+-.+ .+=.+=.-++.||+...+-.-+|.+--++++|.. =|+.-+. ++
T Consensus 132 ----------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a---~i~k~~~-~i--- 194 (435)
T PF03378_consen 132 ----------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQA---YIKKDPS-FI--- 194 (435)
T ss_dssp ----------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHH---HHHHHGG-G----
T ss_pred ----------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHH---HHHhCch-hh---
Confidence 3334333221 11110 1111112345566666666666766444444421 0111111 11
Q ss_pred hccC-CchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhh---hhHHHHHHHHHhhhhcccchHhHHHHHHHHhcc
Q 000718 1078 SKKG-NNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKD---KQMEALVEKLCNRFSGVTDIRQWEYISYCLSQL 1153 (1334)
Q Consensus 1078 ~~K~-~n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kd---kq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL 1153 (1334)
...+ =++|+++|-.+|++= .-+...| .+++-++.++..+ ....+++.=|.+|+...+|++=-+.+..-++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk---~~D~~gF-~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK---ANDHYGF-DLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T---TCHHHHH-HHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC---CcchHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 1111 145666665555432 2334555 4788888888754 357889999999999998887665555444444
Q ss_pred CCChhHHHHHHHhHHHHHHhhCchHHHHHHHH--HHHHhhhcCCh-hhhHHHHHHHHHH
Q 000718 1154 AFTEKGMKKLIESFKTYEHALSEDSVMDNFRN--IINKSKKFAKP-EVKVCIEEFEEKL 1209 (1334)
Q Consensus 1154 ~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~--Ii~k~kk~~k~-e~K~~i~EfE~kl 1209 (1334)
.... +--.+++.+...+. .++..+.. ++..++|...+ |-|-++--+=.-|
T Consensus 271 ~~~~-g~~~li~~id~IQ~-----glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL 323 (435)
T PF03378_consen 271 AIKY-GPDFLIQTIDSIQP-----GLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLL 323 (435)
T ss_dssp HHHH--HHHHHHHHHTTST-----THHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHH
T ss_pred HHHc-CHHHHHHHHHHhcC-----CcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHH
Confidence 3322 55556655543332 23332222 46666776554 4444444333333
No 127
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=49.25 E-value=2e+02 Score=34.24 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=94.5
Q ss_pred hhhhHHHHHHhcCCcCCCC------ChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhh
Q 000718 932 GHCASFLSKFCRNFSLMNK------YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAV 1005 (1334)
Q Consensus 932 ~~f~PlV~~iC~~~~~~~~------~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~ 1005 (1334)
+.|-|.+.-|+.+-..| . ...|++..--|+..++.++++-++.-+..+.--+ +++++.|-.+.+-++.+|..
T Consensus 117 ~vf~~Tl~MI~~d~~~y-Pe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~-kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 117 AVFECTLPMINKDFEEY-PEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGF-KHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHHHHSSTSSSS-HHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHH-TSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhC-hHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHH
Confidence 44566666666665555 1 1236666666788888888888888888887777 88889999999999999988
Q ss_pred ccCcccccc------------hHHHhhhcCCCC--HHHHHHHHHHHHHHHH-ccccccchhHHHHHHHhcCCChhHHHHH
Q 000718 1006 RFPNLLEPW------------TENMYARLKDPS--MAVRKNAVLVLSHLIL-NDMMKVKGYINEMAIRVEDEDQRISNLA 1070 (1334)
Q Consensus 1006 rfpnlve~~------------t~~ly~~L~D~~--~~VR~~~l~vlthLIl-~dmiKvKg~l~~~a~~l~D~d~~I~~~a 1070 (1334)
...+.-++. ..+++.-|.|++ ...+.+| ++|.+|+. -+.-+++..++. ...+...-+.
T Consensus 195 ~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~-~iL~~Lf~~ve~~~i~~~l~~------~~~~n~~~v~ 267 (319)
T PF08767_consen 195 NVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS-QILSNLFRLVESGSIQVPLFD------PGMSNQEFVS 267 (319)
T ss_dssp HHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH-HHHHHHHHHHHTT-SSSSSSS------TTT-HHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH-HHHHHHHHHHHcccccccccC------CCCccHHHHH
Confidence 777622221 345556677776 4555555 55566662 232234443333 1222333333
Q ss_pred HHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHH
Q 000718 1071 KLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIM 1110 (1334)
Q Consensus 1071 ~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~i~ 1110 (1334)
+.+..-|.+--||.--+.+...+..|-...-+.++|++.+
T Consensus 268 ~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~l 307 (319)
T PF08767_consen 268 EYIANLLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHL 307 (319)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3333333333344443334444444422222566676654
No 128
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.17 E-value=1e+02 Score=40.01 Aligned_cols=138 Identities=16% Similarity=0.216 Sum_probs=89.9
Q ss_pred HHHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCC--HHHHHHHH
Q 000718 957 SAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPS--MAVRKNAV 1034 (1334)
Q Consensus 957 ~A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~--~~VR~~~l 1034 (1334)
...++++=+.--++++-+--+..+-+-| .|.+|.--|=++=++|-+.-| ...|.|.+.+++.|.-++ +.||+.+-
T Consensus 93 IGYl~is~L~n~n~dl~klvin~iknDL-~srn~~fv~LAL~~I~niG~r--e~~ea~~~DI~KlLvS~~~~~~vkqkaA 169 (938)
T KOG1077|consen 93 IGYLFISLLLNENSDLMKLVINSIKNDL-SSRNPTFVCLALHCIANIGSR--EMAEAFADDIPKLLVSGSSMDYVKQKAA 169 (938)
T ss_pred HhHHHHHHHHhcchHHHHHHHHHHHhhh-hcCCcHHHHHHHHHHHhhccH--hHHHHhhhhhHHHHhCCcchHHHHHHHH
Confidence 4444444444444444443333343334 233443333222222222222 223667778888777555 78888888
Q ss_pred HHHHHHHH--ccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhcc
Q 000718 1035 LVLSHLIL--NDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1035 ~vlthLIl--~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1334)
+-|-||.. -|.+.+.+-..+|+.+|-|.+-++.--|-.|..-|.+|.|...--.+|-.+++|+
T Consensus 170 LclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~ 234 (938)
T KOG1077|consen 170 LCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLS 234 (938)
T ss_pred HHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHH
Confidence 88888875 4788888888899999999988888888888888888888888888888888886
No 129
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=48.75 E-value=45 Score=43.35 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCCC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFG 450 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~ 450 (1334)
-.+|++.|++=.+|.=.+||+++|.++..|..++ |- .-+.++.+.|..|-|+-.-+--+|--||..|+..||=+
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~k--PE-qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNK--PE-QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCC--cH-HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999999988765 64 45699999999999999999999999999999999943
No 130
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=47.27 E-value=62 Score=43.53 Aligned_cols=112 Identities=25% Similarity=0.336 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHHhhc--CHHHHHHhH---HHHHHHHhcCCChhhHhhHHHHhhhhhhc----cC-------------
Q 000718 951 YPELQASAMLALCRFMII--DADYCDANL---QLLFTVVESSPSEIVRSNCTIALGDLAVR----FP------------- 1008 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~v--s~~~c~~~l---~ll~~~le~s~~~~vR~N~vi~lgDL~~r----fp------------- 1008 (1334)
.|.||.=..+|||++--= ...+|-... --|+..| +.+.|.||+-+|.|||-|.-- |+
T Consensus 613 ~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L-sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~ 691 (1387)
T KOG1517|consen 613 EPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL-SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLD 691 (1387)
T ss_pred cHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh-cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcch
Confidence 467788888888876321 111111111 1122223 446678888888888877664 22
Q ss_pred ---cccccchH----HHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHH-HhcCCChhHHHHH
Q 000718 1009 ---NLLEPWTE----NMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAI-RVEDEDQRISNLA 1070 (1334)
Q Consensus 1009 ---nlve~~t~----~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~-~l~D~d~~I~~~a 1070 (1334)
+-+|.++. .+...++|.+++||+.-...|+|... |+.+.+.. ...|--+.++++=
T Consensus 692 ~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~-------g~~~~~~~va~n~~~~~~~~lE 754 (1387)
T KOG1517|consen 692 DERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV-------GYVSHLKVVAGNYLLPESSSLE 754 (1387)
T ss_pred hhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH-------hhHHHhHHHhhhhcccchhhhh
Confidence 33566666 57788999999999998888999853 45543222 2344445555443
No 131
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.16 E-value=92 Score=39.34 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=97.3
Q ss_pred hHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHh-----HHHHHHHHhcCCChhhHhhHHHHhhhhhhccC-
Q 000718 935 ASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDAN-----LQLLFTVVESSPSEIVRSNCTIALGDLAVRFP- 1008 (1334)
Q Consensus 935 ~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~-----l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfp- 1008 (1334)
.|+.+..-.+ .+..++..|+-+||.+.-=|+.+=+-. ++-|..++.++..-.+.-|++=+|.-||.-=.
T Consensus 154 vp~fi~Ll~s-----~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 154 VPIFIQLLSS-----PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred hHHHHHHhcC-----CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 5666666666 567899999999999966555443322 35566666555545688899999999986431
Q ss_pred ----cccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHc-----cccccchhHHHHHHHhcCCChhHHH
Q 000718 1009 ----NLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN-----DMMKVKGYINEMAIRVEDEDQRISN 1068 (1334)
Q Consensus 1009 ----nlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~-----dmiKvKg~l~~~a~~l~D~d~~I~~ 1068 (1334)
.-|.+-.|-|...|+..|+.|...|..-|++|--. +||=--|.+.++..+|.-+.+.+..
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 46777899999999999999999999999999844 4555557778899999988876663
No 132
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=46.65 E-value=4.2e+02 Score=37.67 Aligned_cols=196 Identities=12% Similarity=0.108 Sum_probs=108.5
Q ss_pred CCCcchhHHHHHHHHHHHHhh---------------ccccccchhHHHHHHHHHHHHHhhccchhh--hHHHHHHHHhhc
Q 000718 197 SSDPDENYLSFVVRNAFLMFE---------------NATLLKDADTKDALCRIIGACATKYHYIEQ--SCASIMHLIHKY 259 (1334)
Q Consensus 197 ~~~~ee~Fi~l~~~~~y~lLE---------------~~~~~K~~~~r~~if~il~~~vk~y~h~~~--~~~~IiqlL~~~ 259 (1334)
|+..++.+.+++.+.+-..-+ ..+. +...+--...+=|..++.+|.-+.. ...-+.++|..|
T Consensus 838 p~~l~~~~~~~~~~~~s~~t~FPakql~~il~~~~~~~~~-~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Y 916 (2196)
T KOG0368|consen 838 PPNLDKSLESLVAKSASRITQFPAKQLAKILDAHLATLNR-AEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEY 916 (2196)
T ss_pred ChhHHHHHHHHHHHHhhhcccCcHHHHHHHHHHHhhcccc-ccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 566677777777666553322 2221 2222222233334456777754443 333355666544
Q ss_pred ccc-------hHHHHHHHHHHHHHcCC------------------chhHHHHHHHHhhcCCCccccCccccchHHHHHHH
Q 000718 260 DFV-------VVHMADAVAGAEKKYAD------------------GSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVE 314 (1334)
Q Consensus 260 ehl-------~~~~Ae~l~~l~~~~~~------------------~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~ 314 (1334)
-.. -.+-.+.+..+.+++.. +.|+-.||.+++. .+++-+-.|..-|.+
T Consensus 917 l~VEk~F~~~~~~~e~~i~~lr~~~~~d~~kVv~~i~SHs~i~~KN~Lv~~ll~~l~~-------~s~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 917 LEVEKLFNGRDSHYEDVILRLREENKKDLKKVVDIILSHSQIKSKNKLVLALLDQLKP-------PSSKVSDEFRDILRK 989 (2196)
T ss_pred HHHHHHhccCcchHHHHHHHHHHhhhhHHHHHHHHHHcchhhhhhhHHHHHHHHHhcC-------CCCCCCHHHHHHHHH
Confidence 322 23445666666666553 1344444444433 255666777777888
Q ss_pred HHhhhhhHHHhhHhHHHHH--hCCCchhHHHHHHHHHHHHHHHHhcCcc---cccchhhhhhhhHHHHHHHHHHHcCCCC
Q 000718 315 LADRLPKLISTNIGVLILH--FGGESYKIRNALVGVLGKLVAKAFKDIE---GEASSKSVRLRTKQAMLEILLERCRDVS 389 (1334)
Q Consensus 315 Lae~~P~lvl~~is~L~~~--Ld~esY~lRnavve~ig~ii~~~l~~~~---~~~~~k~~~~~~rd~lld~L~eR~~D~n 389 (1334)
|+++..+.-- .+++.... +-++||.+|+..+|.|-..=+...-.+- ..+..+.. ..+.-..+|.|..=|.-.+
T Consensus 990 l~~L~~~~~~-eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~l-idS~~~v~dvL~~fF~H~d 1067 (2196)
T KOG0368|consen 990 LTELNHTNTS-EVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKEL-IDSNLSVFDVLPGFFYHSD 1067 (2196)
T ss_pred HHhhccchHH-HHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhh-ccchhhHHHHHHHhhcccc
Confidence 8887765322 23333332 3459999999999977655333221110 11111111 1123357888888888899
Q ss_pred chhhHHHHHHHHH
Q 000718 390 AYTRSRVLQVWAE 402 (1334)
Q Consensus 390 ~yVRskvLQ~~~~ 402 (1334)
+-|++.|++++.+
T Consensus 1068 ~~v~~~alevYv~ 1080 (2196)
T KOG0368|consen 1068 PTVSSAALEVYVR 1080 (2196)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999988
No 133
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=45.58 E-value=3.5e+02 Score=36.43 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=94.5
Q ss_pred CccccchHHHHHHHHHhhhhhHHHhhHh----HHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHH
Q 000718 301 DTVGAENIGRFLVELADRLPKLISTNIG----VLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQA 376 (1334)
Q Consensus 301 D~~g~Kn~s~FL~~Lae~~P~lvl~~is----~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~ 376 (1334)
......+-+.-|..+|...+....+... .|++.|..--=.+|-+++.++-.+.. .. . -+.
T Consensus 308 N~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n----------s~--~----l~~ 371 (815)
T KOG1820|consen 308 NINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN----------ST--P----LSK 371 (815)
T ss_pred chhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh----------cc--c----HHH
Confidence 3444455555666666666555544433 33333333334677777777666543 01 1 467
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcC---CcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCC
Q 000718 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEH---SVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPF 449 (1334)
Q Consensus 377 lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~---~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf 449 (1334)
+++...+..-+.||=.|....+.+.+.+..- ..|..-...++...+-+..|+..-||++|..-+..++..+=.
T Consensus 372 ~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 372 MSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 8888899999999999999999998888842 366566679999999999999999999999999999887654
No 134
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=45.51 E-value=55 Score=31.08 Aligned_cols=72 Identities=17% Similarity=0.193 Sum_probs=55.4
Q ss_pred hccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHH
Q 000718 241 KYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELA 316 (1334)
Q Consensus 241 ~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~La 316 (1334)
.|.+...+...+++-++.|+.+.+|++|.+-.+ ..+++.-|+-.|+..+++..-.. --..| -|+|..|..||
T Consensus 5 shsnP~~vf~~il~Qie~YdNli~~vVe~~ky~-t~l~~DvL~~~ll~~L~~~~r~~--~k~dg-~~~s~Wlq~La 76 (77)
T PF11732_consen 5 SHSNPLIVFDVILSQIESYDNLIEPVVESLKYF-TDLGYDVLTFCLLERLSNPGRSR--LKDDG-TNISQWLQSLA 76 (77)
T ss_pred hccCcHHHHHHHHHHHHHhhhhHHHHHHHHhhc-chhhHHHHHHHHHHHHhcccchh--cCcCC-CCHHHHHHHHh
Confidence 366667788889999999999999999988654 77888888889999888644222 12223 78899998887
No 135
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.96 E-value=4e+02 Score=35.18 Aligned_cols=212 Identities=16% Similarity=0.194 Sum_probs=119.7
Q ss_pred HHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcch-hcccCccHHHHHHHHHHHhhcCCCh--HHH
Q 000718 558 CVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPL-VLSQDKSIYEAVENAFITIYVRKSP--VET 634 (1334)
Q Consensus 558 ~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~L-VWskd~~V~~~vi~ay~~Ly~~~~~--~~i 634 (1334)
..+.|=+.|.+|+.++ .-++-.=..|.+|-+|-=.|...+||+.||. |=..+-.||.+.+-|.--+.|..|. -.+
T Consensus 516 rqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~ 593 (929)
T KOG2062|consen 516 RQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPST 593 (929)
T ss_pred hhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhhchHH
Confidence 4467889999999887 5577777889999999999999999999999 5566678998888888877777761 111
Q ss_pred HHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccC-----hhh--
Q 000718 635 AKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSS-----AAV-- 707 (1334)
Q Consensus 635 a~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~a~-----~~i-- 707 (1334)
+ +|+.+.=..+-.+=--+.-=+.-.|.=....|+.|=-. + .+...--|.||+|-++||--.. |.+
T Consensus 594 V----~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl-~---~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~ 665 (929)
T KOG2062|consen 594 V----SLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPL-T---SDPVDFVRQGALIALAMIMIQQTEQLCPKVNG 665 (929)
T ss_pred H----HHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhh-h---cChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence 1 12221111111111111111112233334444444222 1 1223345779999999975332 322
Q ss_pred hhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccc-cccc---cccccccHHHHHHHHHHc--cCCCCCCchHHHHHH
Q 000718 708 LGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQE-DKKK---LLLSYGSRVFATLESLIT--GFWLPDNIWYTAADK 781 (1334)
Q Consensus 708 v~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~-~k~~---~r~~~~~~if~~L~~~l~--~~~~~~~~W~~~aeq 781 (1334)
++.++..++ ++ +.+-.++++-.+.=|-|.+. .++. ++-...|.=...+..++. .|| .|||++-
T Consensus 666 frk~l~kvI----~d--KhEd~~aK~GAilAqGildaGGrNvtislqs~tg~~~~~~vvGl~~Flq~W----yWfPL~~- 734 (929)
T KOG2062|consen 666 FRKQLEKVI----ND--KHEDGMAKFGAILAQGILDAGGRNVTISLQSMTGHTKLDAVVGLVVFLQYW----YWFPLIH- 734 (929)
T ss_pred HHHHHHHHh----hh--hhhHHHHHHHHHHHhhhhhcCCceEEEEEeccCCCCchHHHHHHHHHHHHH----HHHHHHH-
Confidence 223333332 22 34455777765555544432 2222 333444554566666554 344 7999864
Q ss_pred HHHHHHhcCCChH
Q 000718 782 AISAIYTIHPTPE 794 (1334)
Q Consensus 782 aInaIy~l~~~Pd 794 (1334)
.-.||-.|-
T Consensus 735 ----flSLaf~PT 743 (929)
T KOG2062|consen 735 ----FLSLAFTPT 743 (929)
T ss_pred ----HHHHhcCcc
Confidence 224555664
No 136
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=44.54 E-value=2e+02 Score=30.64 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=72.0
Q ss_pred HHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCC-C
Q 000718 311 FLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDV-S 389 (1334)
Q Consensus 311 FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~-n 389 (1334)
||+.|=. ....+.+.+..+++ +..+..+.+++|.+|+++-..-++.+.+. .+. .+...+..+.++-... +
T Consensus 19 fls~l~~-~~~~~~~~~~~~i~---~~~~~~~~~~le~y~ei~~~aWk~a~~~~--~~~---~e~~~iq~~~~~a~~~~~ 89 (152)
T PF12422_consen 19 FLSFLFS-LSGIFIKKIHKLIK---CQIPQVSKSVLELYGEILFRAWKKASKDK--LEE---IEEVCIQDLMEAAIHLEY 89 (152)
T ss_pred HHHHHHH-hhHHHHHHHHHHHH---HHcccccHHHHHHHHHHHHHHhHhhhhhH--HHH---HHHHHHHHHHHHhHHhcc
Confidence 4444433 33444443433333 33388999999999999988877652211 111 1455666666666555 6
Q ss_pred chhhHHHHHHHHHHHhcCC------cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Q 000718 390 AYTRSRVLQVWAELCEEHS------VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 390 ~yVRskvLQ~~~~L~e~~~------iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~l 443 (1334)
+.+=++.-.++..+-+++. ++.+-+..++ -+.|+-..+.||.||..++..+
T Consensus 90 ~~~~~~~R~~L~~f~~~k~~~~v~~mL~rl~~PiL---~r~L~~~n~~Vr~na~~l~~~a 146 (152)
T PF12422_consen 90 LPLHSKFREVLLSFHSQKKRKGVDEMLLRLYEPIL---WRALQAANAKVRSNAAALFLDA 146 (152)
T ss_pred hHhHHHHHHHHHHHHhcccccchHHHHHHHHHHHH---HHHHcCCCcchhccHHHHHHHH
Confidence 6666666677777777661 1222222222 2457888999999999987653
No 137
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=44.42 E-value=1.4e+02 Score=36.03 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=76.4
Q ss_pred HhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc-CCCCchhhHHHHHHHHHHHh
Q 000718 327 IGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC-RDVSAYTRSRVLQVWAELCE 405 (1334)
Q Consensus 327 is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~-~D~n~yVRskvLQ~~~~L~e 405 (1334)
+..++.+|++.+-++|-.-..++|.++..--..+ ... .-..++..|...+ .|-+-.||+|||-.+..|+.
T Consensus 126 l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Q------e~v---~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIR 196 (342)
T KOG2160|consen 126 LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQ------EQV---IELGALSKLLKILSSDDPNTVRTKALFAISSLIR 196 (342)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHH------HHH---HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 3455568999999999999999999874321111 100 0122444444433 58888899999999999999
Q ss_pred cCCcchhhHHHH--HHHHHhhccC--CchhHHHHHHHHHHHHHhhCCCC
Q 000718 406 EHSVSIGLWNEV--AEVAAGRLED--KSAIVRKSALNLLVMMLQHNPFG 450 (1334)
Q Consensus 406 ~~~iP~~~~~~v--~~~av~RL~D--KSs~VRK~AiqLL~~lL~~nPf~ 450 (1334)
++.--...+..+ +.....=|++ ++...++.|+-|++.++..+++-
T Consensus 197 n~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~ 245 (342)
T KOG2160|consen 197 NNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSD 245 (342)
T ss_pred cCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhh
Confidence 763222222211 2333444566 78888999999999999988864
No 138
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=42.82 E-value=5.2e+02 Score=30.71 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=102.9
Q ss_pred hhhHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc------CHHHHHHhHHHHHHH
Q 000718 910 DTLSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII------DADYCDANLQLLFTV 983 (1334)
Q Consensus 910 d~i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v------s~~~c~~~l~ll~~~ 983 (1334)
+.+..+.....+. .-+..++.-++-.+++.-.+ +.+.-+..|.-+++=++.. +.++++.-.|.|.++
T Consensus 65 ~~l~~~l~~~~~~-----d~v~~~~~tL~~~~~k~lkk--g~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~ 137 (309)
T PF05004_consen 65 EALIRALSSRYLP-----DFVEDRRETLLDALLKSLKK--GKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRI 137 (309)
T ss_pred HHHHHHHHhcccH-----HHHHHHHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHH
Confidence 3444444444433 44445555555555554333 2223333343334433333 689999999999999
Q ss_pred HhcC-CChhhHhhHHHHhhhhhhcc---Ccccc---cchHHHhhhc--C----------CCCHHHHHHHHHHHHHHHH--
Q 000718 984 VESS-PSEIVRSNCTIALGDLAVRF---PNLLE---PWTENMYARL--K----------DPSMAVRKNAVLVLSHLIL-- 1042 (1334)
Q Consensus 984 le~s-~~~~vR~N~vi~lgDL~~rf---pnlve---~~t~~ly~~L--~----------D~~~~VR~~~l~vlthLIl-- 1042 (1334)
+.-+ ..+.+|..++.+||=+++-- +.-++ .-...+|... + .+++.|.-.||.--+.|+.
T Consensus 138 l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~ 217 (309)
T PF05004_consen 138 LTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTL 217 (309)
T ss_pred HhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcC
Confidence 8654 45789999998888766532 22222 2244344422 1 1246788888876665551
Q ss_pred cc-ccc--cchhHHHHHHHhcCCChhHHHHHHH---HHHHHhcc-CCchhhhhhhHHHhhc
Q 000718 1043 ND-MMK--VKGYINEMAIRVEDEDQRISNLAKL---FFHELSKK-GNNPIYNLLPDILGKL 1096 (1334)
Q Consensus 1043 ~d-miK--vKg~l~~~a~~l~D~d~~I~~~a~~---ff~eL~~K-~~n~iyn~~pdiis~L 1096 (1334)
.+ .++ +...+-.+..+|.-+|..||--|-- |..|++.. +.+..|...++++..|
T Consensus 218 ~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l 278 (309)
T PF05004_consen 218 PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQL 278 (309)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHH
Confidence 11 122 3445567888999999998877655 56677774 2234566666665554
No 139
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.15 E-value=8.8e+02 Score=31.31 Aligned_cols=369 Identities=14% Similarity=0.139 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCCCCC--HHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhc----cCh
Q 000718 632 VETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVS--MSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAK----SSA 705 (1334)
Q Consensus 632 ~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~--~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~----a~~ 705 (1334)
..+|++|..=+++---+-.--+|+++..+..+|.-+ ..+|+.|-.-|. .. -...+|+|+|| ||+|. +..
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a-~s--~~~n~rkGgLi--GlAA~~iaLg~~ 77 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYA-YS--PHANMRKGGLI--GLAAVAIALGIK 77 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhc-cC--cccccccchHH--HHHHHHHHhccc
Confidence 457778877777766666677999999999999766 477887777775 21 12345668744 44443 221
Q ss_pred -hhhhhhHHHHHHhhcCCCCCCcHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHccCCCCCCchHHHHHHHHH
Q 000718 706 -AVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAIS 784 (1334)
Q Consensus 706 -~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaIn 784 (1334)
.....++-.=+=.+|+ ..|..+-.|+|-.|..++...+.. -++.-++||..|..+... ++..=-+.||---.
T Consensus 78 ~~~Y~~~iv~Pv~~cf~---D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaD---sd~~V~~~aeLLdR 150 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFS---DQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSAD---SDQNVRGGAELLDR 150 (675)
T ss_pred cHHHHHHhhHHHHHhcc---CccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcC---CccccccHHHHHHH
Confidence 1122222111112455 468888889999999998766643 124456678777776542 22111122332222
Q ss_pred HHHhcCC--ChHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHH-------HHHHHHH
Q 000718 785 AIYTIHP--TPETLAVDLVKKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIA-------MNQLVYI 855 (1334)
Q Consensus 785 aIy~l~~--~Pd~l~~~iIk~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVA-------lk~lV~l 855 (1334)
.|=.+.. .+.--...+|.-+..+.+.. ...-=.|+||-+- ++.+-|+
T Consensus 151 LikdIVte~~~tFsL~~~ipLL~eriy~~------------------------n~~tR~flv~Wl~~Lds~P~~~m~~yl 206 (675)
T KOG0212|consen 151 LIKDIVTESASTFSLPEFIPLLRERIYVI------------------------NPMTRQFLVSWLYVLDSVPDLEMISYL 206 (675)
T ss_pred HHHHhccccccccCHHHHHHHHHHHHhcC------------------------CchHHHHHHHHHHHHhcCCcHHHHhcc
Confidence 2211110 00000111111112222100 0000122222221 1111111
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhccccCCCCCCCCCCccchhhhhccc-cchhhhhhhhHHHHHh---hhccCCCCCCchh
Q 000718 856 ESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINAELGLA-ASEDAKLDTLSEKAEK---EIISGGSSQKNLI 931 (1334)
Q Consensus 856 E~~~~~lKrrk~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~Elgl~-t~eD~~~d~i~~i~E~---eLl~g~~~~~sLL 931 (1334)
...-.- +. .-.| ..+.|+..||. +.|.. .+++..
T Consensus 207 ~~~ldG---------------------------------------Lf~~LsD-~s~eVr~~~~t~l~~fL~e--I~s~P~ 244 (675)
T KOG0212|consen 207 PSLLDG---------------------------------------LFNMLSD-SSDEVRTLTDTLLSEFLAE--IRSSPS 244 (675)
T ss_pred hHHHHH---------------------------------------HHHHhcC-CcHHHHHHHHHHHHHHHHH--HhcCcc
Confidence 111111 11 1111 12344445554 22210 012222
Q ss_pred h-hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHH-hcCCCh--------h-hHhhHHHHh
Q 000718 932 G-HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLFTVV-ESSPSE--------I-VRSNCTIAL 1000 (1334)
Q Consensus 932 ~-~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~~~l-e~s~~~--------~-vR~N~vi~l 1000 (1334)
+ .|..++.-+..+-.. ++|.+|.-|+.-+--|.-+...----+++-+++.+ .-.++. . .=+|.+..+
T Consensus 245 s~d~~~~i~vlv~~l~s--s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l 322 (675)
T KOG0212|consen 245 SMDYDDMINVLVPHLQS--SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKL 322 (675)
T ss_pred ccCcccchhhccccccC--CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHH
Confidence 2 343333333333222 56778888877776666665544333333333222 111111 1 112233333
Q ss_pred hhhhhccCcccc--cchHHHhhhcCCCCHHHHHHHHHHHHHHHH---ccccccchhHH-HHHHHhcCCChhHHHHHHHHH
Q 000718 1001 GDLAVRFPNLLE--PWTENMYARLKDPSMAVRKNAVLVLSHLIL---NDMMKVKGYIN-EMAIRVEDEDQRISNLAKLFF 1074 (1334)
Q Consensus 1001 gDL~~rfpnlve--~~t~~ly~~L~D~~~~VR~~~l~vlthLIl---~dmiKvKg~l~-~~a~~l~D~d~~I~~~a~~ff 1074 (1334)
.+-..--.. +| +-.+-+-..|.|....-|-.+|.-+.||-- +.|++--.+|+ -+.+.|.|++..+--.+-...
T Consensus 323 ~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~ll 401 (675)
T KOG0212|consen 323 VSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLL 401 (675)
T ss_pred Hhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 333322222 33 455677788899999999999999988864 34444444553 477899999999999888888
Q ss_pred HHHhccC
Q 000718 1075 HELSKKG 1081 (1334)
Q Consensus 1075 ~eL~~K~ 1081 (1334)
.+++.-.
T Consensus 402 a~i~~s~ 408 (675)
T KOG0212|consen 402 ASICSSS 408 (675)
T ss_pred HHHhcCc
Confidence 8887765
No 140
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=42.07 E-value=1.6e+02 Score=35.45 Aligned_cols=114 Identities=16% Similarity=0.261 Sum_probs=84.6
Q ss_pred HHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHH--------HhhhcCCCCHHHHHH
Q 000718 961 ALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN--------MYARLKDPSMAVRKN 1032 (1334)
Q Consensus 961 ~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~--------ly~~L~D~~~~VR~~ 1032 (1334)
+++|+++-|+.| -.||..+ ..++=.|=+.+..-+-|+..||+.++-.|... .-..|..++=..||+
T Consensus 155 ~l~~~iL~~~~f-----~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 155 SLAKIILYSECF-----WKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HHHHHHHTSGGG-----GGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHHHHHhCcHHH-----HHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 567887776644 3488876 56777899999999999999999998877543 445788899999999
Q ss_pred HHHHHHHHHHcc--------ccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhcc
Q 000718 1033 AVLVLSHLILND--------MMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKK 1080 (1334)
Q Consensus 1033 ~l~vlthLIl~d--------miKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K 1080 (1334)
+|..|..|++.- ||-=.-.|--|..+|-|+.+.|+--|=.-|.-....
T Consensus 229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 999999999753 333344455688899999999999997777654443
No 141
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=41.42 E-value=2.3e+02 Score=36.53 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=92.8
Q ss_pred HHHHhhcCHHHHHHhHHHHHHHHhc---CCChhhHhhHHHHhhhhhhc--------------cCcccccchHHHhhhcC-
Q 000718 962 LCRFMIIDADYCDANLQLLFTVVES---SPSEIVRSNCTIALGDLAVR--------------FPNLLEPWTENMYARLK- 1023 (1334)
Q Consensus 962 L~K~m~vs~~~c~~~l~ll~~~le~---s~~~~vR~N~vi~lgDL~~r--------------fpnlve~~t~~ly~~L~- 1023 (1334)
|..+......-.++-+..++.+++. ..++.+|..+++++|.|..+ .+.+++.|.+.+...|.
T Consensus 418 l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 497 (618)
T PF01347_consen 418 LASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKE 497 (618)
T ss_dssp HHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHH
Confidence 3333333445556666666666633 24567888888888888643 45777888888888877
Q ss_pred ---CCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCC---ChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhcc
Q 000718 1024 ---DPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDE---DQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1024 ---D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~---d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls 1097 (1334)
..+...+-.+|..|-++=. -..+..+..++.+. ...||-.|-.=|..++...|+.+.+.|-+|+..=+
T Consensus 498 ~~~~~~~~~~~~~LkaLgN~g~------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~ 571 (618)
T PF01347_consen 498 AVSRGDEEEKIVYLKALGNLGH------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTT 571 (618)
T ss_dssp HHHTT-HHHHHHHHHHHHHHT-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TT
T ss_pred HhhccCHHHHHHHHHHhhccCC------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCC
Confidence 4556777777777776622 23445666677777 78888888888888888888889999888887544
Q ss_pred CCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 000718 1098 NQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRF 1134 (1334)
Q Consensus 1098 ~~~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf 1134 (1334)
.+ .| -||.-|++=+- -+....++.++.+.+
T Consensus 572 e~---~E--vRiaA~~~lm~--~~P~~~~l~~i~~~l 601 (618)
T PF01347_consen 572 ED---PE--VRIAAYLILMR--CNPSPSVLQRIAQSL 601 (618)
T ss_dssp S----HH--HHHHHHHHHHH--T---HHHHHHHHHHH
T ss_pred CC---hh--HHHHHHHHHHh--cCCCHHHHHHHHHHH
Confidence 32 22 33433332222 234555555555544
No 142
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.14 E-value=42 Score=43.30 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=100.3
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhH----HHHHHHHhcCCChhhHhhHHHHhhhh
Q 000718 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANL----QLLFTVVESSPSEIVRSNCTIALGDL 1003 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l----~ll~~~le~s~~~~vR~N~vi~lgDL 1003 (1334)
+.+-.+-.|-|.....+ .++.||..++-++.=+. +..-++++ --.|.-+....++.||+|-.|++|-.
T Consensus 364 ~~~~d~I~phv~~G~~D-----Tn~~Lre~Tlksm~~La---~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 364 QILNDQIFPHVALGFLD-----TNATLREQTLKSMAVLA---PKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HhhcchhHHHHHhhccc-----CCHHHHHHHHHHHHHHH---hhhchhhhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 33444555666655555 68899999888775432 22333333 22334444556789999999999966
Q ss_pred h------hccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHH-HccccccchhH-HHHHHHhcCCChhHHHHHHHHHH
Q 000718 1004 A------VRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLI-LNDMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFH 1075 (1334)
Q Consensus 1004 ~------~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLI-l~dmiKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~ 1075 (1334)
+ +|.+.|+-++|. .|+||=+--|+-++..+.-.. .=++-.+.-+| -.++-.++|+++.+++-|..-+.
T Consensus 436 ~~~l~~~~R~~vL~~aftr----alkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 436 APHLAASVRKRVLASAFTR----ALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred ccccchhhhccccchhhhh----hhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 5 477777776654 699999999999999887655 34677788888 48999999999999999988666
Q ss_pred HHhcc
Q 000718 1076 ELSKK 1080 (1334)
Q Consensus 1076 eL~~K 1080 (1334)
....|
T Consensus 512 ~fl~k 516 (690)
T KOG1243|consen 512 QFLEK 516 (690)
T ss_pred HHHhh
Confidence 54444
No 143
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=41.10 E-value=4.9e+02 Score=29.32 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=106.5
Q ss_pred HHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHH-----HHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc-
Q 000718 936 SFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADY-----CDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN- 1009 (1334)
Q Consensus 936 PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~-----c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpn- 1009 (1334)
|++..++++ |+..|..|+-+|.++....+.. ..+=-.-||-.|=.|+.|.+...+.--+++|..++|.
T Consensus 4 ~~~k~LAs~------d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASN------DKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcC------ChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 455555554 8899999999999998776554 2222245666666899999999999999999999988
Q ss_pred -ccccchHHHhhhcCCCC---HHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHH-Hhcc--CC
Q 000718 1010 -LLEPWTENMYARLKDPS---MAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHE-LSKK--GN 1082 (1334)
Q Consensus 1010 -lve~~t~~ly~~L~D~~---~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~e-L~~K--~~ 1082 (1334)
..=.|...++..++-+. ...|-.=.++|..-+++.++. +..--.-+.+-|..+...+... |... .|
T Consensus 78 ~~~~~f~~~f~~tm~rEW~~ID~~R~DKf~~LvR~~~~~~~~-------~l~~~~w~~~~v~~~~~~l~~~~l~~~~~~p 150 (217)
T PF05997_consen 78 KAALLFLKAFWETMRREWDGIDRLRMDKFLMLVRRFLRQSFR-------FLKKNGWDKELVEEFNEILSETPLNPNDQVP 150 (217)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCcHHHHHHHHHHHHHccCCCcCCCc
Confidence 45566677777776655 233444444444444332221 1111111223444444444443 2222 24
Q ss_pred chhhhhhhHHHh----hccCC--------CCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 000718 1083 NPIYNLLPDILG----KLCNQ--------NLKTESFCNIMQLLIGFIKKDKQMEALVEKLCN 1132 (1334)
Q Consensus 1083 n~iyn~~pdiis----~Ls~~--------~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~ 1132 (1334)
+.+.-|+.||+- +.... +++.+.+..+++-.+..+.+. ....+..|+..
T Consensus 151 ~Gl~~H~~Di~ldEL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s-~~k~l~~~i~~ 211 (217)
T PF05997_consen 151 NGLRYHFADIFLDELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKS-PDKVLRKRIKE 211 (217)
T ss_pred hhHHHHHHHHHHHHHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 555555555432 22211 366777777777666666432 33455555543
No 144
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=40.38 E-value=25 Score=35.22 Aligned_cols=92 Identities=11% Similarity=0.194 Sum_probs=65.2
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH-HHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHH
Q 000718 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDIL 1093 (1334)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdii 1093 (1334)
...|...|.++..--.-|...+|.+|.-.|+|+.+..= ...=.-+++.++-.+..++.|+..+... .++..+
T Consensus 20 ~~eI~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~~~~~gr~~~Y~p~is~~e~~~~~~~~~l~~~~~g-------s~~~l~ 92 (115)
T PF03965_consen 20 VREIHEALPEERSWAYSTVQTLLNRLVEKGFLTREKIGRAYVYSPLISREEYLAQELRQFLDRLFDG-------SIPQLV 92 (115)
T ss_dssp HHHHHHHHCTTSS--HHHHHHHHHHHHHTTSEEEEEETTCEEEEESSSHHHHHHHHHHHHHHHHSTT-------HHHHHH
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhCCceeEeecCCceEEEeCCcHHHHHHHHHHHHHHHHhCC-------CHHHHH
Confidence 36788888888555667778899999999999998542 1222357888888999999999866544 377777
Q ss_pred hhccCC-CCChhHHHHHHHHH
Q 000718 1094 GKLCNQ-NLKTESFCNIMQLL 1113 (1334)
Q Consensus 1094 s~Ls~~-~~~~~~f~~i~kfL 1113 (1334)
.+|.+. .++++....+-+.|
T Consensus 93 ~~l~~~~~ls~~el~~L~~li 113 (115)
T PF03965_consen 93 AALVESEELSPEELEELRKLI 113 (115)
T ss_dssp HHHHHCT-S-HHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHH
Confidence 887543 78888877766544
No 145
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.25 E-value=1.1e+03 Score=31.65 Aligned_cols=218 Identities=15% Similarity=0.168 Sum_probs=118.9
Q ss_pred CChHHHHHHHHHHHHHhhcCHHHHHHh------HHHHHHHHhcCCChhhHhhHHHHhhhhhhccC---ccccc-chHHHh
Q 000718 950 KYPELQASAMLALCRFMIIDADYCDAN------LQLLFTVVESSPSEIVRSNCTIALGDLAVRFP---NLLEP-WTENMY 1019 (1334)
Q Consensus 950 ~~~~l~~~A~l~L~K~m~vs~~~c~~~------l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfp---nlve~-~t~~ly 1019 (1334)
.+..+...++..|-|+....+ ++.. +|-|.+++ .++++.++..++=.|..|.+--- .+|.- ..|.+-
T Consensus 302 ~n~ellil~v~fLkkLSi~~E--NK~~m~~~giV~kL~kLl-~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv 378 (708)
T PF05804_consen 302 ENEELLILAVTFLKKLSIFKE--NKDEMAESGIVEKLLKLL-PSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLV 378 (708)
T ss_pred CCHHHHHHHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHh-cCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHH
Confidence 467888899999999866543 2332 47888888 56777788888888888776211 11111 257777
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcc----ccccchhHHHHHHH-hcCCChhHHHHHHHHHHHHhccCCch--hh--hhhh
Q 000718 1020 ARLKDPSMAVRKNAVLVLSHLILND----MMKVKGYINEMAIR-VEDEDQRISNLAKLFFHELSKKGNNP--IY--NLLP 1090 (1334)
Q Consensus 1020 ~~L~D~~~~VR~~~l~vlthLIl~d----miKvKg~l~~~a~~-l~D~d~~I~~~a~~ff~eL~~K~~n~--iy--n~~p 1090 (1334)
..|.|++ .|..|+-+|.||=..| |+.-.+-+.-++.+ +.-+++++.--+-.+...|+.-..|+ +. |.||
T Consensus 379 ~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~ 456 (708)
T PF05804_consen 379 ELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQ 456 (708)
T ss_pred HHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHH
Confidence 8888765 7788999999998854 44444444344443 44466666433333445555543232 10 2233
Q ss_pred HHHhhccCCCCChhHHHHHHHHHHhhhhhhh-hHHHHHHHHHhhhhcccchHhHHHHHHHHhccCCChhHHHHHHHh---
Q 000718 1091 DILGKLCNQNLKTESFCNIMQLLIGFIKKDK-QMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKKLIES--- 1166 (1334)
Q Consensus 1091 diis~Ls~~~~~~~~f~~i~kfLl~~i~Kdk-q~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikKL~e~--- 1166 (1334)
-.+.+.-.. ...-.-.+++.+-.+=...| .....+..|..-+..+.++..--.+.=+|+.|+..+-...+++.+
T Consensus 457 ~L~~ra~~~--~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~l 534 (708)
T PF05804_consen 457 SLMKRALKT--RDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNL 534 (708)
T ss_pred HHHHHHHhc--ccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCH
Confidence 333322110 00011112222222210000 011122233333334444444444555777788878788888864
Q ss_pred HHHHHHhh
Q 000718 1167 FKTYEHAL 1174 (1334)
Q Consensus 1167 ~~~y~dkL 1174 (1334)
+|..++.|
T Consensus 535 lp~L~~~L 542 (708)
T PF05804_consen 535 LPWLKDLL 542 (708)
T ss_pred HHHHHHHh
Confidence 66778888
No 146
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=39.49 E-value=8.7e+02 Score=30.46 Aligned_cols=342 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----HhhhhhhhhhhhhcccCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 000718 68 FDRVYSLIRNFSSLSPSCKLSLVESLRSN-----LSVLLPNVDSLSRVSQSQDNETPVLDRLSSHRNAFKIYTFFLISIV 142 (1334)
Q Consensus 68 FD~lysll~~f~~l~~~~~~~l~~~l~s~-----~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~alkmy~yLl~~~~ 142 (1334)
+..+-.++++-.......|...+..|... +...+..+.++-++|. |-...... +.-+|..|+.
T Consensus 50 ~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Gr---di~~~~~~---------i~~~L~~wl~ 117 (464)
T PF11864_consen 50 LELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLRLEALIALTDNGR---DIDFFEYE---------IGPFLLSWLE 117 (464)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHcCCc---Cchhcccc---------hHHHHHHHHH
Q ss_pred HHhhhccccCCCCCcccccccCCCCCCccch-hhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhcccc
Q 000718 143 LAQEFNISSNNNPKVTASTRKKQPVNSWNWD-PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATL 221 (1334)
Q Consensus 143 ~~~e~~~~~~~~~~~~~k~kK~~~~~~~~W~-~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~ 221 (1334)
...+........ ..+.++.+.+....-+-+ ..-...+..+.+++..+ ....+|+++..+.+.+..+.=+..
T Consensus 118 ~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn------~~~l~e~~i~~lv~~i~~iC~~Ts- 189 (464)
T PF11864_consen 118 PSYQAARSARRK-AKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFN------FNYLDEDEISSLVDQICTICKSTS- 189 (464)
T ss_pred HHHHHHHHHHHH-hhccccccccccccccchhhhHHHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHHHHHhccC-
Q ss_pred ccchhHHHHHHHHHHHHHhhccchh---------------------hhHHHHHHHHhhcccchHHHHHHHHHHH-----H
Q 000718 222 LKDADTKDALCRIIGACATKYHYIE---------------------QSCASIMHLIHKYDFVVVHMADAVAGAE-----K 275 (1334)
Q Consensus 222 ~K~~~~r~~if~il~~~vk~y~h~~---------------------~~~~~IiqlL~~~ehl~~~~Ae~l~~l~-----~ 275 (1334)
+.......++++.+.+. ||+.. +..-++|.+|-. .|....+...+..+. .
T Consensus 190 --~~~di~~~L~vldaii~-y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~-S~~g~~~i~~L~~iL~~~~~~ 265 (464)
T PF11864_consen 190 --SEDDIEACLSVLDAIIT-YGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLK-SHLGHSAIRTLCDILRSPDPQ 265 (464)
T ss_pred --cHHHHHHHHHHHHHHHH-cCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHc-CccHHHHHHHHHHHHcccCcc
Q ss_pred HcCCchhHHHHHHHHhhcCCCccccCccccc-------hHHHHHHHHHhhhhhHHHhhHhHHHHHh--------CCCchh
Q 000718 276 KYADGSLATYLIREIGRTNPKAYVKDTVGAE-------NIGRFLVELADRLPKLISTNIGVLILHF--------GGESYK 340 (1334)
Q Consensus 276 ~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~K-------n~s~FL~~Lae~~P~lvl~~is~L~~~L--------d~esY~ 340 (1334)
.+....+.--=+.-+...-... ....-|. =+..|...|....|.+...-+..+..+| ..+.+.
T Consensus 266 ~~~~~~~lRGAv~~l~~ll~~~--~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~ 343 (464)
T PF11864_consen 266 NKRDINVLRGAVFFLRMLLWGS--GEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWD 343 (464)
T ss_pred ccccHHHHhhHHHHHHHHHhcc--ccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCch
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc------cchhhhhhhhHHHHHHHHHHHcCCCCchh--hHHHHHHHHHHHh-------
Q 000718 341 IRNALVGVLGKLVAKAFKDIEGE------ASSKSVRLRTKQAMLEILLERCRDVSAYT--RSRVLQVWAELCE------- 405 (1334)
Q Consensus 341 lRnavve~ig~ii~~~l~~~~~~------~~~k~~~~~~rd~lld~L~eR~~D~n~yV--RskvLQ~~~~L~e------- 405 (1334)
.+++++-.++.....-+... +.-... -..+++. .|..++.+.|. |-+..+.+.+...
T Consensus 344 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~-ie~L~~~~~~~g~~~~~~~f~~~~~~~lp~s~~ 415 (464)
T PF11864_consen 344 ---IILDIIEEIFDKIQPFDSWYSNSSSLDQLSSN----LHSLLSS-IESLYEQHDFNGPKDKLFNFFERVHSYLPDSSA 415 (464)
T ss_pred ---HHHHHHHHHHhhccccccccccccchHHHHHH----HHHHHHH-HHHHHhCCCcCccHHHHHHHHHHHhccCCHHHH
Q ss_pred --------cCCcchhh-HHHHHHHHHhhcc--CCchhHHHHHHHHHHHH
Q 000718 406 --------EHSVSIGL-WNEVAEVAAGRLE--DKSAIVRKSALNLLVMM 443 (1334)
Q Consensus 406 --------~~~iP~~~-~~~v~~~av~RL~--DKSs~VRK~AiqLL~~l 443 (1334)
..+-|..- |..-+...+++.- ++++.||-.|++.+..+
T Consensus 416 ~~vl~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 416 LLVLFYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 147
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=38.94 E-value=6.7e+02 Score=29.01 Aligned_cols=177 Identities=14% Similarity=0.224 Sum_probs=99.6
Q ss_pred HHHHHHHHhhccccc-----cchhHHHHHHHHHHHHHhhccchhhh--HHHHHHHHh-hcccchHHHHHHHHHHHHHcCC
Q 000718 208 VVRNAFLMFENATLL-----KDADTKDALCRIIGACATKYHYIEQS--CASIMHLIH-KYDFVVVHMADAVAGAEKKYAD 279 (1334)
Q Consensus 208 ~~~~~y~lLE~~~~~-----K~~~~r~~if~il~~~vk~y~h~~~~--~~~IiqlL~-~~ehl~~~~Ae~l~~l~~~~~~ 279 (1334)
+.+-+|.++|.|..+ ....+|-.+.+.|+.+-...+...+. +.+++..+. .|.|-++...=.+..+.+.++.
T Consensus 58 wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~ 137 (278)
T PF08631_consen 58 WLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDE 137 (278)
T ss_pred HHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCCh
Confidence 344566666653221 44567777777777776665654433 556666664 5666555555555556666666
Q ss_pred chhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhH-HHHHhCCCch-hHHHHHHHHHHHHHHHHh
Q 000718 280 GSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGV-LILHFGGESY-KIRNALVGVLGKLVAKAF 357 (1334)
Q Consensus 280 ~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~-L~~~Ld~esY-~lRnavve~ig~ii~~~l 357 (1334)
...-+.+.+=|......+ ...+.+-..+-++++..|......+.. |..+++...- -+..+|+..+ + ..
T Consensus 138 ~~~~~~L~~mi~~~~~~e-----~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~---~--~~ 207 (278)
T PF08631_consen 138 EEYEEILMRMIRSVDHSE-----SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRV---L--LT 207 (278)
T ss_pred hHHHHHHHHHHHhccccc-----chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---H--HH
Confidence 666555555566665333 466778888889999999998887754 4445665433 4444444331 1 11
Q ss_pred cCcccccchhhhhhhhHHHHHHHHHHHc-CCCCchhhHHH
Q 000718 358 KDIEGEASSKSVRLRTKQAMLEILLERC-RDVSAYTRSRV 396 (1334)
Q Consensus 358 ~~~~~~~~~k~~~~~~rd~lld~L~eR~-~D~n~yVRskv 396 (1334)
+. ..+... ..+.+...+|++.+...+ ...++-.++.+
T Consensus 208 ~~-~~~~~~-~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~ 245 (278)
T PF08631_consen 208 TQ-SKDLSS-SEKIESLEELLSIVEHSLGKQLSAEAASAI 245 (278)
T ss_pred cC-Cccccc-hhHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 11 111111 122444677888555433 34455444444
No 148
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=37.95 E-value=2.2e+02 Score=30.47 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=50.6
Q ss_pred CchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcC--H---HHHHHhHHHHHHHHhcCCChhhHhhHHHHhhh
Q 000718 928 KNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIID--A---DYCDANLQLLFTVVESSPSEIVRSNCTIALGD 1002 (1334)
Q Consensus 928 ~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs--~---~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgD 1002 (1334)
++.++.+.--+....++ +++.-|-+|+.-+.-.+..+ + +.|..-+..+..+|++...+.++.-++.++++
T Consensus 20 ~~~l~~l~~ri~~LL~s-----~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~ 94 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQS-----KSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTR 94 (165)
T ss_pred HHHHHHHHHHHHHHhCC-----CChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44566665555555655 34555566666666666654 2 44677789999999998888999999999887
Q ss_pred hh
Q 000718 1003 LA 1004 (1334)
Q Consensus 1003 L~ 1004 (1334)
+.
T Consensus 95 l~ 96 (165)
T PF08167_consen 95 LF 96 (165)
T ss_pred HH
Confidence 65
No 149
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=37.81 E-value=36 Score=41.54 Aligned_cols=68 Identities=22% Similarity=0.463 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCChhhHhhHHHHhhhhhhccCc---ccccc--hHHHhhhcCCCCHHHHHHHHHHHHHHHHcc
Q 000718 977 LQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN---LLEPW--TENMYARLKDPSMAVRKNAVLVLSHLILND 1044 (1334)
Q Consensus 977 l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpn---lve~~--t~~ly~~L~D~~~~VR~~~l~vlthLIl~d 1044 (1334)
+..|+++|+.|.||.+=|=+--=+|-+..-||. +|+.| -..+.+.|+-+||.||.+||.-+--||.+.
T Consensus 368 lkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 368 LKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhhc
Confidence 578899999999997754333333444455664 66776 567999999999999999999998888653
No 150
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.71 E-value=1.5e+02 Score=29.14 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchh---HHHHHHHHHHHHHh
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAI---VRKSALNLLVMMLQ 445 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~---VRK~AiqLL~~lL~ 445 (1334)
...+...+.+..+|.+.=.|-.+.+++.+|+..+.++...+..-.......+.|-..- .-.+--+++..++.
T Consensus 34 ~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~ 108 (113)
T PF02847_consen 34 HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA 108 (113)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999988888888888888887655 45555555555554
No 151
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.50 E-value=5.2e+02 Score=35.18 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=34.7
Q ss_pred cchhhHHHHHHHHHhhccC--CchhHHHHHHHHHHHHHhhCCC
Q 000718 409 VSIGLWNEVAEVAAGRLED--KSAIVRKSALNLLVMMLQHNPF 449 (1334)
Q Consensus 409 iP~~~~~~v~~~av~RL~D--KSs~VRK~AiqLL~~lL~~nPf 449 (1334)
.+-.+....+++|++||.+ +++..|.-++++....|-.||-
T Consensus 762 ~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ 804 (1010)
T KOG1991|consen 762 LLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPK 804 (1010)
T ss_pred cHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcH
Confidence 3334556789999999988 9999999999999999988885
No 152
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=37.46 E-value=2.8e+02 Score=34.79 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=70.1
Q ss_pred HcCCch----hHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCc-hhHHHHHHHHHH
Q 000718 276 KYADGS----LATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGES-YKIRNALVGVLG 350 (1334)
Q Consensus 276 ~~~~~~----l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~es-Y~lRnavve~ig 350 (1334)
++.+.+ |+-.|+..+....+.. .=....-|.++.++..+-.+.|.++...-..|+.++.+-+ ..=|.-+-.-+.
T Consensus 253 ~~ad~sLi~~L~pvlleRs~~Lfp~~-~y~~eV~rvlss~ll~lfk~~PsLvv~l~~~ilef~g~~~~~~~k~~l~~hlv 331 (459)
T PF14764_consen 253 QDADGSLICQLLPVLLERSDALFPIP-QYQAEVRRVLSSQLLALFKRHPSLVVELSKEILEFLGSASNIHSKEELFTHLV 331 (459)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHHHhCcHHHHHhHHHHHHHhcccccccchhHHHHHHH
Confidence 455554 4445555556555433 2234456889999999999999999998888888888532 333444444444
Q ss_pred HHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhh
Q 000718 351 KLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTR 393 (1334)
Q Consensus 351 ~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVR 393 (1334)
-+|-++....-...=..++ ...|++.|+-=.+-++...|
T Consensus 332 WaIGEy~s~~~d~rct~~~----i~~~fE~LE~llyE~~~~~~ 370 (459)
T PF14764_consen 332 WAIGEYLSVSYDRRCTVEQ----INEFFEALEALLYEVTQSRR 370 (459)
T ss_pred HHHhcccccccCCccCHHH----HHHHHHHHHHHHHHHhhccc
Confidence 4443443332111112344 78899999876666666654
No 153
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=1e+03 Score=31.98 Aligned_cols=152 Identities=16% Similarity=0.201 Sum_probs=101.7
Q ss_pred HHHHHhhhhhHHHhhHhHHHHHhC-CCchhHHHHHHHHHHHHHHHHhcCcc-----c----ccc-h------------hh
Q 000718 312 LVELADRLPKLISTNIGVLILHFG-GESYKIRNALVGVLGKLVAKAFKDIE-----G----EAS-S------------KS 368 (1334)
Q Consensus 312 L~~Lae~~P~lvl~~is~L~~~Ld-~esY~lRnavve~ig~ii~~~l~~~~-----~----~~~-~------------k~ 368 (1334)
+..|+.+.|+.-.-.|+.|...|- ...|.--+++++++-.+|.......+ + +|. + ++
T Consensus 378 i~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~E 457 (865)
T KOG1078|consen 378 IRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKE 457 (865)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 344556667666666666666654 44589999999999999875332211 0 000 0 00
Q ss_pred -hhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh-
Q 000718 369 -VRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH- 446 (1334)
Q Consensus 369 -~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~- 446 (1334)
.+..+=..+.-....|++=.|+.||+.|++++.++--++..| +..|..+..+-+.|+--.||-.|--.|..+...
T Consensus 458 gP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l---~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~~ 534 (865)
T KOG1078|consen 458 GPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL---LPSILVLLKRCLNDSDDEVRDRATFYLKNLEEKD 534 (865)
T ss_pred CCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc---cccHHHHHHHHhcCchHHHHHHHHHHHHHhhhhh
Confidence 011112456667788999999999999999999999444444 247788888999999999999999998888743
Q ss_pred ----CCC-CCCCChhHHHHHHHHHH
Q 000718 447 ----NPF-GPQLRIASFEATLDEYR 466 (1334)
Q Consensus 447 ----nPf-~~~L~~~~~~~~Le~~~ 466 (1334)
.|| +.+-++..++..|-.+.
T Consensus 535 ~~l~~~~~~l~~s~~~le~~l~~y~ 559 (865)
T KOG1078|consen 535 DVLNQNYSGLFVSIPGLERSLVSYI 559 (865)
T ss_pred hhhcccccccccccchhHHHHHHHh
Confidence 444 23455566666666555
No 154
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=37.10 E-value=4.7e+02 Score=32.90 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHhccccccccCCCCcchhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhc-----cchhh
Q 000718 173 DPQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKY-----HYIEQ 247 (1334)
Q Consensus 173 ~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y-----~h~~~ 247 (1334)
.+++..+|..|..++.-+-..+|. .|..-+.-.+|..|-+ .++..+|...+++|.-+.+.- +.+.-
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWe------q~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ 371 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWE------QHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEI 371 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHH------HHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHH
Confidence 366777777777777766666663 3333333333333322 256677777777777666542 22222
Q ss_pred hHHHHHHHHh-hcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHH--HHHHHHhhhhhHH-
Q 000718 248 SCASIMHLIH-KYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGR--FLVELADRLPKLI- 323 (1334)
Q Consensus 248 ~~~~IiqlL~-~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~--FL~~Lae~~P~lv- 323 (1334)
+.-++++.=. ..+......+|.+......++.-+=+.-|-.-|-. . | -|++++. .+.+|-++.+.--
T Consensus 372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt---~----D--~~~~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT---A----D--EPRAVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc---C----c--chHHHHHHHHHHHHHhhcCHHHH
Confidence 2222333211 22333344455555555555443322222222211 1 1 2333332 3556655555422
Q ss_pred ----HhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcC
Q 000718 324 ----STNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCR 386 (1334)
Q Consensus 324 ----l~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~ 386 (1334)
-.-+..+++-.|+.|-++|+++|=|+..|+..+=- +..+.+.. +.-.++-.++++=..|..
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~-~~mePhL~-~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM-EEMEPHLE-QLTSSKLNLLQLYINRAS 507 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH-HhhhhHhh-hccHHHHHHHHHHHHHhh
Confidence 23345667779999999999999999999876521 22222211 111225567777666654
No 155
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=36.10 E-value=1.3e+02 Score=38.14 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=92.0
Q ss_pred hHHHHHHHHHHHHHhhcCHHHHHHhH------HHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccc-----hHHHhh
Q 000718 952 PELQASAMLALCRFMIIDADYCDANL------QLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPW-----TENMYA 1020 (1334)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs~~~c~~~l------~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~-----t~~ly~ 1020 (1334)
..++.+|++-+-|=|.-|-.|-...| .+|+.+|.+ |+..|..-..++.|++.+-|.||=+-+ ++-+-.
T Consensus 402 d~l~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~ 480 (743)
T COG5369 402 DDLDFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVN 480 (743)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHH
Confidence 56788888888888888887766554 789999944 777889999999999999999987766 445666
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcCCChhHHHHHHHHHH
Q 000718 1021 RLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVEDEDQRISNLAKLFFH 1075 (1334)
Q Consensus 1021 ~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D~d~~I~~~a~~ff~ 1075 (1334)
.+.-+|...|++++-||-||+-|+.=-.|=+. ..+.-...||+=.+..-+-..|.
T Consensus 481 ~v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilr 541 (743)
T COG5369 481 LVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILR 541 (743)
T ss_pred HhhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHH
Confidence 77777889999999999999988764333222 23555677887666655444444
No 156
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=35.95 E-value=84 Score=40.42 Aligned_cols=163 Identities=19% Similarity=0.224 Sum_probs=86.1
Q ss_pred HHhcCCcCCCCChHHHHHHHHHHHHH---hhcCH-----------HHHHHhHHHHHHHHh---cCCChhhHhhHHHHhhh
Q 000718 940 KFCRNFSLMNKYPELQASAMLALCRF---MIIDA-----------DYCDANLQLLFTVVE---SSPSEIVRSNCTIALGD 1002 (1334)
Q Consensus 940 ~iC~~~~~~~~~~~l~~~A~l~L~K~---m~vs~-----------~~c~~~l~ll~~~le---~s~~~~vR~N~vi~lgD 1002 (1334)
.+|..+..- +++.|+.+|+++++-+ .|++. ...++-++-|...|. ...+..-+--++-|||-
T Consensus 438 ~L~~~~~~~-~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN 516 (618)
T PF01347_consen 438 ELAKSPKVK-NSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGN 516 (618)
T ss_dssp HHHT-HHHH-T-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHhCcccc-CChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhc
Confidence 345554332 5678899999887754 34442 222234567777776 44556778888999998
Q ss_pred hhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCC
Q 000718 1003 LAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGN 1082 (1334)
Q Consensus 1003 L~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~ 1082 (1334)
+. +|+.++.-.+.+...- +.+..+|-.|+.-|-++....-=+++..+..+..=- .++++||=.|=. -|-.-
T Consensus 517 ~g--~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~-~e~~EvRiaA~~---~lm~~-- 587 (618)
T PF01347_consen 517 LG--HPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNT-TEDPEVRIAAYL---ILMRC-- 587 (618)
T ss_dssp HT---GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-T-TS-HHHHHHHHH---HHHHT--
T ss_pred cC--CchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCC-CCChhHHHHHHH---HHHhc--
Confidence 86 4776666555554443 557999999999998885444445555554443321 234556665522 22222
Q ss_pred chhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhh
Q 000718 1083 NPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFI 1117 (1334)
Q Consensus 1083 n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i 1117 (1334)
|+=+..+-.|...|.. |.-..+..|..++|
T Consensus 588 ~P~~~~l~~i~~~l~~-----E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 588 NPSPSVLQRIAQSLWN-----EPSNQVASFVYSHL 617 (618)
T ss_dssp ---HHHHHHHHHHHTT------S-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhh-----CchHHHHHHHHHhc
Confidence 2333334444444432 33355566666555
No 157
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=35.44 E-value=1.1e+03 Score=34.73 Aligned_cols=101 Identities=10% Similarity=0.109 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhhccCcchHHHHhhhcchhcccC-ccHHHHHHHHHHHhhcCCC---------hHHHHHHHHHHHhh---c
Q 000718 579 ENTILLLMRCKQFQIDGAEACLHKMLPLVLSQD-KSIYEAVENAFITIYVRKS---------PVETAKNLLNLAID---S 645 (1334)
Q Consensus 579 ~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd-~~V~~~vi~ay~~Ly~~~~---------~~~ia~nLi~L~~~---a 645 (1334)
.+.++=|+...-|.=..-.+|+|.+|.-.--++ ...-+.++++|-.-|+..+ +..+|=.+|-|-.+ .
T Consensus 678 ~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~Np~~f~~~D~~yvLaysiIMLnTDlHnp 757 (1780)
T PLN03076 678 LKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCNPKAFSSADTAYVLAYSVIMLNTDAHNP 757 (1780)
T ss_pred HHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHhHHhcCC
Confidence 345555555444443445688888887665554 5688999999999998655 23344455544333 3
Q ss_pred CcchhhHHHHHHHHHH---hCCCCCHHHHHHHHHHhh
Q 000718 646 NIGDQAAMEFIVGTLV---SKGDVSMSTISALWDFFC 679 (1334)
Q Consensus 646 t~~dl~sLEeLl~~~~---~~~~I~~~vi~~LW~~~~ 679 (1334)
+...-.+.|+-+...- ..++++.+++..+.+...
T Consensus 758 ~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~ 794 (1780)
T PLN03076 758 MVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERIS 794 (1780)
T ss_pred ccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHH
Confidence 4444555666665542 234799999999888875
No 158
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=34.85 E-value=96 Score=40.53 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=60.7
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHh
Q 000718 1015 TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILG 1094 (1334)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis 1094 (1334)
+.-|=..-+|+=+.||.++|.++..|+.+-==.=+--|.-.+--|=||+-.|+.-|-+.+..|..|+||+= -++++-|-
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK-~Vvi~EIe 384 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK-IVVIDEIE 384 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce-eehHHHHH
Confidence 34444567888999999999999998876332223334556667789999999999999999999998873 24555566
Q ss_pred hcc
Q 000718 1095 KLC 1097 (1334)
Q Consensus 1095 ~Ls 1097 (1334)
+|.
T Consensus 385 r~~ 387 (988)
T KOG2038|consen 385 RLA 387 (988)
T ss_pred HHH
Confidence 653
No 159
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=34.70 E-value=53 Score=26.52 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.2
Q ss_pred hHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000718 1015 TENMYARLKDPSMAVRKNAVLVLSHL 1040 (1334)
Q Consensus 1015 t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1334)
.+.|-..|+++++.||++|+-.|.+|
T Consensus 14 i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 14 IPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 36667777777788888887777766
No 160
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=34.05 E-value=2.8e+02 Score=32.98 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHHHhcCC--------------cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHH
Q 000718 377 MLEILLERCRDVSAYTRSRVLQVWAELCEEHS--------------VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVM 442 (1334)
Q Consensus 377 lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~--------------iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~ 442 (1334)
|+..|..-+. .||.+|.-||..+.+-..... +|. .-.-+++....-|+|.+.+|+|+++-||..
T Consensus 174 F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 174 FWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGP-DPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred HHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCC-CccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 4444443333 588899999999887665432 332 223677888889999999999999998644
Q ss_pred HHhhCCCCCC-----CChhHHHHHHHH
Q 000718 443 MLQHNPFGPQ-----LRIASFEATLDE 464 (1334)
Q Consensus 443 lL~~nPf~~~-----L~~~~~~~~Le~ 464 (1334)
+=|.... ++.++...-+..
T Consensus 252 ---~~PL~s~~~~~~~~~~d~~~Lv~a 275 (307)
T PF04118_consen 252 ---HFPLDSPVLQSLLSPEDKELLVMA 275 (307)
T ss_pred ---hCCCCCcchhhhCCHHHHHHHHHH
Confidence 4465432 565554444443
No 161
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.91 E-value=2.4e+02 Score=33.54 Aligned_cols=116 Identities=12% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHH----HHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH
Q 000718 309 GRFLVELADRLPKLISTNIGVLILHFGGESYKIRNAL----VGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER 384 (1334)
Q Consensus 309 s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnav----ve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR 384 (1334)
-.|+..|++--|..+.+++..++-.+=.+-=++|.+| +-+++.|+..+ ++ .-.+. -|.++-.|.-|
T Consensus 109 Ln~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~l-n~-----~i~~~----ld~lv~~Ll~k 178 (334)
T KOG2933|consen 109 LNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSL-NN-----SIDQE----LDDLVTQLLHK 178 (334)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH-HH-----HHHHH----HHHHHHHHHhh
Confidence 4577888888899998888877777666666677766 45566666432 11 11112 68888899999
Q ss_pred cCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHH
Q 000718 385 CRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNL 439 (1334)
Q Consensus 385 ~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqL 439 (1334)
--+-|.|||.-|..++..++.+- -|. .++...+--+.-....||.+|...
T Consensus 179 a~~dnrFvreda~kAL~aMV~~v-tp~----~~L~~L~~~~~~~n~r~r~~a~~~ 228 (334)
T KOG2933|consen 179 ASQDNRFVREDAEKALVAMVNHV-TPQ----KLLRKLIPILQHSNPRVRAKAALC 228 (334)
T ss_pred hcccchHHHHHHHHHHHHHHhcc-ChH----HHHHHHHHHHhhhchhhhhhhhcc
Confidence 99999999999999999998763 343 233333333677788888887654
No 162
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=33.85 E-value=2.2e+02 Score=33.74 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=73.7
Q ss_pred chhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhc---CHHH---HHHhHHHHHHHH--hc---------CCChh
Q 000718 929 NLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII---DADY---CDANLQLLFTVV--ES---------SPSEI 991 (1334)
Q Consensus 929 sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~v---s~~~---c~~~l~ll~~~l--e~---------s~~~~ 991 (1334)
.++..+.|.+..++.+.+. .+..|+++..||+=.+.+ +.+= |.+.+..+|... +. .+++.
T Consensus 125 ei~~~~~~~L~~~l~d~s~---~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSA---SPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHHHHHHHHHHHHhCCcc---chHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 3556678888889988753 467777776666655443 2222 236777555433 22 22467
Q ss_pred hHhhHHHHhhhhhhccCc-----ccccchHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000718 992 VRSNCTIALGDLAVRFPN-----LLEPWTENMYARLKDPSMAVRKNAVLVLSHL 1040 (1334)
Q Consensus 992 vR~N~vi~lgDL~~rfpn-----lve~~t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1334)
|.++++-+-|=|+-.-|. .++...+.+...|.-++..||-.|--.|.-|
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 888888877766644443 4555688899999999999999998888755
No 163
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=33.77 E-value=68 Score=27.92 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCCCCHHHHHHHHHHhh
Q 000718 651 AAMEFIVGTLVSKGDVSMSTISALWDFFC 679 (1334)
Q Consensus 651 ~sLEeLl~~~~~~~~I~~~vi~~LW~~~~ 679 (1334)
.+|.+.+.+|+..|.|+|....+.|..|-
T Consensus 13 ~aL~dtLDeli~~~~I~p~La~kVL~~FD 41 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQLAMKVLEQFD 41 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999984
No 164
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=33.75 E-value=1.6e+02 Score=31.04 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=69.4
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcC------C
Q 000718 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVED------E 1062 (1334)
Q Consensus 995 N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D------~ 1062 (1334)
-.++-+||+.-.-|+---.=...|-.+|+.++|.|.-.||.+|--++.|-=-++.-++ -+|.+++.+ +
T Consensus 20 ~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~ 99 (139)
T cd03567 20 EAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRT 99 (139)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCC
Confidence 4578889999877775545577888999999999999999999999999877665555 368888853 6
Q ss_pred ChhHHHHHHHHHHHHhcc
Q 000718 1063 DQRISNLAKLFFHELSKK 1080 (1334)
Q Consensus 1063 d~~I~~~a~~ff~eL~~K 1080 (1334)
++.|++-....+.+++..
T Consensus 100 ~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 100 SEKVKTKIIELLYSWTLE 117 (139)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 788999888888888764
No 165
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=33.73 E-value=5.3e+02 Score=28.44 Aligned_cols=122 Identities=22% Similarity=0.279 Sum_probs=72.2
Q ss_pred hHhhHHHHhhhhhhc-------------cCcc---cccc-hHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH
Q 000718 992 VRSNCTIALGDLAVR-------------FPNL---LEPW-TENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE 1054 (1334)
Q Consensus 992 vR~N~vi~lgDL~~r-------------fpnl---ve~~-t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~ 1054 (1334)
||-+++.++++++.. ||.- =.+. ..-+.-.|+|+++.||-.|+.+|+.|+-+ .|..+ .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~g----sk~~L-~ 76 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEG----SKPFL-A 76 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHc----cHHHH-H
Confidence 677777777777777 3443 1222 23445578999999999999999999876 34443 3
Q ss_pred HHHHhcCCC-----------hhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccC--C--CCChhHHHHHHHHHHhhhh
Q 000718 1055 MAIRVEDED-----------QRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCN--Q--NLKTESFCNIMQLLIGFIK 1118 (1334)
Q Consensus 1055 ~a~~l~D~d-----------~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~--~--~~~~~~f~~i~kfLl~~i~ 1118 (1334)
+|-.-..+. ..|..+=+....-|..-.....-..+-.++..|-. | .++.+=...+++.+..++.
T Consensus 77 ~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~ 155 (182)
T PF13251_consen 77 QAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLR 155 (182)
T ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHh
Confidence 444444443 12333333333344443335566677777777742 2 5555555556655555553
No 166
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=33.70 E-value=2.4e+02 Score=40.36 Aligned_cols=93 Identities=16% Similarity=0.214 Sum_probs=55.9
Q ss_pred hhcccCccHHHHHHHHHHHhhcCCC---hHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC--CC--CHHHHHHHHHHh
Q 000718 606 LVLSQDKSIYEAVENAFITIYVRKS---PVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG--DV--SMSTISALWDFF 678 (1334)
Q Consensus 606 LVWskd~~V~~~vi~ay~~Ly~~~~---~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~--~I--~~~vi~~LW~~~ 678 (1334)
|+||+++.|++--...|+.+|..-+ -+.+..+|+..+..-+-++..+-=.++..++.+. .+ -...|..+-++.
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~~~l~~fa~~l~giLD~l 522 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNPSELQPFATFLKGILDYL 522 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHTHHHHHGGGGGG
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999997766 4789999999885545555444334445555432 00 122223333322
Q ss_pred hccCCCCCHHhHHHHHHHHHHHhc
Q 000718 679 CFNVSGTTPEKSRAALSVLCMAAK 702 (1334)
Q Consensus 679 ~~~~~~~s~~~~r~Al~lL~Mla~ 702 (1334)
. +.+..|-|....||+.+|-
T Consensus 523 ~----~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 523 D----NLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp G----G--HHHHHHHHHHHHHHHH
T ss_pred h----cCCHHHHHHHHHHHHHHhc
Confidence 2 3566666766667766653
No 167
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.91 E-value=1.9e+02 Score=35.50 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=59.9
Q ss_pred chHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhHHH----HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhh
Q 000718 1014 WTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYINE----MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLL 1089 (1334)
Q Consensus 1014 ~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~----~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~ 1089 (1334)
+...+-.+++--+..||+.|+.-|..++.+-+..+.++++. .+-.+.|+|..+|+..-.+|. +.||+.-
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~-------~~i~~~~ 131 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLD-------SLILPAC 131 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHH-------HHHhhcc
Confidence 35788889999999999999999999999999999998865 455778999999999998887 4455555
Q ss_pred hHH
Q 000718 1090 PDI 1092 (1334)
Q Consensus 1090 pdi 1092 (1334)
|+-
T Consensus 132 ~e~ 134 (393)
T KOG2149|consen 132 KED 134 (393)
T ss_pred hhh
Confidence 544
No 168
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=32.16 E-value=3.1e+02 Score=29.66 Aligned_cols=108 Identities=16% Similarity=0.271 Sum_probs=78.2
Q ss_pred HHhHHHHHHHHhcCCC--h---hhHhhHHHHhhhh----hhccCcccccchHHHhhhcCCC--CHHHHHHHHHHHHHHHH
Q 000718 974 DANLQLLFTVVESSPS--E---IVRSNCTIALGDL----AVRFPNLLEPWTENMYARLKDP--SMAVRKNAVLVLSHLIL 1042 (1334)
Q Consensus 974 ~~~l~ll~~~le~s~~--~---~vR~N~vi~lgDL----~~rfpnlve~~t~~ly~~L~D~--~~~VR~~~l~vlthLIl 1042 (1334)
.+.+++|+.+.|.+.. | .+-+-.+-++-.| .+.|.++-+++...+..-.+-+ ++.|-+.||-+|=.+++
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 3568999999998875 2 2333334343333 3477777777777776655433 47788899999999988
Q ss_pred cc---ccccchhH--HHHHHHhcCCChhHHHHHHHHHHHHhccC
Q 000718 1043 ND---MMKVKGYI--NEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1043 ~d---miKvKg~l--~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1334)
+. +-.|+..+ ..+..+|.++|+.|+.-|-..+.-|-.|.
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 75 34555555 68999999999999999999998887776
No 169
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=32.09 E-value=4.2e+02 Score=30.07 Aligned_cols=121 Identities=16% Similarity=0.097 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHHHHhhcCHHHHHHhHHHH--HHHHh-----cCCChhhHhhH--HHHhhhhhhccCcccccchHHHhhh
Q 000718 951 YPELQASAMLALCRFMIIDADYCDANLQLL--FTVVE-----SSPSEIVRSNC--TIALGDLAVRFPNLLEPWTENMYAR 1021 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll--~~~le-----~s~~~~vR~N~--vi~lgDL~~rfpnlve~~t~~ly~~ 1021 (1334)
...++..+.--|+++...+...- ..+.-+ +..+. ...+...+..+ -.++-|+|...|+---+-.+.|-.+
T Consensus 51 ~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~ 129 (234)
T PF12530_consen 51 SLELRYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGC 129 (234)
T ss_pred chhHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 34456677778888887776554 344422 22222 12223333333 3578899999999666668888999
Q ss_pred c-CCCCHHHHHHHHHHHHHHHHccccccchhHHHHHHHh-cCCChhHHH-HHHH
Q 000718 1022 L-KDPSMAVRKNAVLVLSHLILNDMMKVKGYINEMAIRV-EDEDQRISN-LAKL 1072 (1334)
Q Consensus 1022 L-~D~~~~VR~~~l~vlthLIl~dmiKvKg~l~~~a~~l-~D~d~~I~~-~a~~ 1072 (1334)
| .+.++.++..+|-.|++|--++.|-+.....-+++-+ .|..|.|.. ++.+
T Consensus 130 L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l 183 (234)
T PF12530_consen 130 LNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSL 183 (234)
T ss_pred HhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 9 8999999999999999999888877777665455534 333344443 4443
No 170
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=32.01 E-value=1.1e+03 Score=31.39 Aligned_cols=53 Identities=11% Similarity=-0.048 Sum_probs=40.4
Q ss_pred cchhHHH-HHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcC
Q 000718 223 KDADTKD-ALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYA 278 (1334)
Q Consensus 223 K~~~~r~-~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~ 278 (1334)
+....|. .+-++|+.+- |+|..-+.-.+-++|++ -+-++.+|-++-.+...+.
T Consensus 192 ~~n~~r~~w~~rLL~lL~--~~~Psi~~~~~~~lL~~-A~~~~~l~lli~L~~~~~~ 245 (696)
T PF14838_consen 192 SLNRKRQQWAHRLLCLLS--SQHPSIAIEAISYLLTK-AQNPEHLALLIRLYAGLSV 245 (696)
T ss_pred ccchHHHHHHHHHHHHHh--cCCCchHHHHHHHHHHh-cCCHHHHHHHHHHHhcccC
Confidence 3344444 4667777765 99988888888899988 7888888888888887776
No 171
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.60 E-value=1.1e+03 Score=31.87 Aligned_cols=184 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCcccc------C
Q 000718 228 KDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVK------D 301 (1334)
Q Consensus 228 r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~------D 301 (1334)
|....+-|....++|--..+++ -|--++..+...|.++.++.-+|.-+.-+..++ - |
T Consensus 40 RR~A~rgLKa~srkYR~~Vga~---------------Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d--d~~~v~dd 102 (970)
T KOG0946|consen 40 RRDAVRGLKAFSRKYREEVGAQ---------------GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD--DSPEVMDD 102 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---------------ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC--cchhhccc
Q ss_pred ccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHH--------HhcCcccccchhhhhhhh
Q 000718 302 TVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAK--------AFKDIEGEASSKSVRLRT 373 (1334)
Q Consensus 302 ~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~--------~l~~~~~~~~~k~~~~~~ 373 (1334)
++-+..++..+.+.=-+.|. +|++|+.+++--.|.+|-.-|+.+..++.. ++..+.+
T Consensus 103 s~qsdd~g~~iae~fik~qd----~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~g----------- 167 (970)
T KOG0946|consen 103 STQSDDLGLWIAEQFIKNQD----NITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMG----------- 167 (970)
T ss_pred chhhhHHHHHHHHHHHcCch----hHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchh-----------
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHHHh-cCCcch-----hhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhC
Q 000718 374 KQAMLEILLERCRDVSAYTRSRVLQVWAELCE-EHSVSI-----GLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e-~~~iP~-----~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~n 447 (1334)
+..++|+| +|..--+|.-+|=.+..|+. +..|-. +-+.++..+.-.-=-=.+++|---++.||-.||.+|
T Consensus 168 IS~lmdlL----~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N 243 (970)
T KOG0946|consen 168 ISKLMDLL----RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNN 243 (970)
T ss_pred HHHHHHHH----hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhC
No 172
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=31.37 E-value=6.8e+02 Score=33.04 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=110.5
Q ss_pred HHHHHHHHh------hcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhc--cCcccccchHHHhh-hcCCCCHH
Q 000718 958 AMLALCRFM------IIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVR--FPNLLEPWTENMYA-RLKDPSMA 1028 (1334)
Q Consensus 958 A~l~L~K~m------~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~r--fpnlve~~t~~ly~-~L~D~~~~ 1028 (1334)
+.+++-+-| +=++++=++.+|+|+.-+ ++.+..|..-++-.++=++-- +|.+=.+-.|.|+. +++-.++.
T Consensus 366 ~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~-~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~ 444 (700)
T KOG2137|consen 366 ALLFILENMDLLKEKTPPEEVKEKILPLLYRSL-EDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLY 444 (700)
T ss_pred chhhHHhhHHHHHhhCChHHHHHHHHHHHHHHh-cCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchH
Confidence 345555555 335677788889999988 566666777666665533211 23232333444443 67888899
Q ss_pred HHHHHHHHHHHHHHccccc--cchhHHHHHHHhcCCChhHHHHHHHHHHHHhccCCc----hhhhhhhHHHhhccCCCCC
Q 000718 1029 VRKNAVLVLSHLILNDMMK--VKGYINEMAIRVEDEDQRISNLAKLFFHELSKKGNN----PIYNLLPDILGKLCNQNLK 1102 (1334)
Q Consensus 1029 VR~~~l~vlthLIl~dmiK--vKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n----~iyn~~pdiis~Ls~~~~~ 1102 (1334)
||-|+|+.+.-|| .-+=| +=.++.-+++|+-=.||.|--..-..+..+..+.++ ..-|++|=+|-....+.++
T Consensus 445 vkvn~L~c~~~l~-q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~ 523 (700)
T KOG2137|consen 445 VKVNVLPCLAGLI-QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLN 523 (700)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccccc
Confidence 9999999999998 22222 223445689999888999988888888888887666 4778899999888777899
Q ss_pred hhHHHHHHHHHHhhh
Q 000718 1103 TESFCNIMQLLIGFI 1117 (1334)
Q Consensus 1103 ~~~f~~i~kfLl~~i 1117 (1334)
-+.|-.+|+++=...
T Consensus 524 ~~Qy~~~m~~i~~ml 538 (700)
T KOG2137|consen 524 GEQYNKYMSEIRLML 538 (700)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998887654443
No 173
>PF14165 YtzH: YtzH-like protein
Probab=31.29 E-value=69 Score=31.02 Aligned_cols=40 Identities=13% Similarity=0.370 Sum_probs=35.3
Q ss_pred cCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCC
Q 000718 645 SNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSG 684 (1334)
Q Consensus 645 at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~ 684 (1334)
-|.+|..-+|+|+..|+.++.|++.+-++|=+||.+...|
T Consensus 23 gTvsEcEQieRLvksLm~n~~i~~~ik~~L~~Iy~ysq~G 62 (87)
T PF14165_consen 23 GTVSECEQIERLVKSLMANPNIDADIKQTLEEIYSYSQNG 62 (87)
T ss_pred CcHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHccC
Confidence 4778899999999999999999999999999999755443
No 174
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=31.21 E-value=5.7e+02 Score=27.54 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=58.6
Q ss_pred cchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH
Q 000718 305 AENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER 384 (1334)
Q Consensus 305 ~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR 384 (1334)
+-.|..-|..+....|-.|+.+.+.|...||.=+|-=....+..+..+.-=...+ ... ||.++-.|...
T Consensus 72 ~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~Al~PLi~~s-------~~l----rd~lilvLRKa 140 (158)
T PF14676_consen 72 SSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLLRALLPLIKFS-------PSL----RDSLILVLRKA 140 (158)
T ss_dssp -HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHHHHHHHHTT--------HHH----HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC-------HHH----HHHHHHHHHHH
Confidence 3578999999999999999999999999999877655555555555543211111 223 89999999998
Q ss_pred cCCCCchhhHHHHHHH
Q 000718 385 CRDVSAYTRSRVLQVW 400 (1334)
Q Consensus 385 ~~D~n~yVRskvLQ~~ 400 (1334)
++-.-..+|.-|+..+
T Consensus 141 mf~r~~~~R~~Av~Gf 156 (158)
T PF14676_consen 141 MFSRELDARQMAVNGF 156 (158)
T ss_dssp TT-SSHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHh
Confidence 8877778888777665
No 175
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=30.48 E-value=1.5e+02 Score=38.62 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=85.5
Q ss_pred HHHHHHHHhhcCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccC--cccccchHHHhhhcCCCCHHHHHHHHH
Q 000718 958 AMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFP--NLLEPWTENMYARLKDPSMAVRKNAVL 1035 (1334)
Q Consensus 958 A~l~L~K~m~vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfp--nlve~~t~~ly~~L~D~~~~VR~~~l~ 1035 (1334)
.++-++|..- ..+|-..-+|.|..++ +++|..||-=++..+=++.-+.+ -+-|+-.|++...++|.|+.+|.+||.
T Consensus 314 pl~k~~k~ld-~~eyq~~i~p~l~kLF-~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlk 391 (690)
T KOG1243|consen 314 PLFKLGKDLD-EEEYQVRIIPVLLKLF-KSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLK 391 (690)
T ss_pred HHHHhhhhcc-ccccccchhhhHHHHh-cCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHH
Confidence 3445555533 4458888889988888 89999999998888877777666 345667789999999999999999999
Q ss_pred HHHHHHHcccc---ccchhH-HHHHHHhcCCChhHHHHHHHHHHHH
Q 000718 1036 VLSHLILNDMM---KVKGYI-NEMAIRVEDEDQRISNLAKLFFHEL 1077 (1334)
Q Consensus 1036 vlthLIl~dmi---KvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL 1077 (1334)
.+.+|+- ++ -+-|.+ -.||+.-.|++..||--.-.|..++
T Consensus 392 sm~~La~--kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki 435 (690)
T KOG1243|consen 392 SMAVLAP--KLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKI 435 (690)
T ss_pred HHHHHHh--hhchhhhcHHHHHHHHhhCccccCcccccceeeeccc
Confidence 9998872 22 244555 3577777788888876555555443
No 176
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=30.03 E-value=4.5e+02 Score=30.61 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhh-hhHHHhhHhHHHHHhCCCchhHH
Q 000718 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRL-PKLISTNIGVLILHFGGESYKIR 342 (1334)
Q Consensus 264 ~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~-P~lvl~~is~L~~~Ld~esY~lR 342 (1334)
.-.|+.++.+++..+.++| ..|++-.+...+.+ .-.=.+....-+.+.. |+.-...++.|+.+|++..--+|
T Consensus 133 ~~~A~~La~~a~~~~~~~L-a~il~~ya~~~fr~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 133 IEIAEALAQVAEAQGLPNL-ARILSSYAKGRFRD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HHHHHHHHHHHHhCCCccH-HHHHHHHHhcCCCC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 5678889999999999988 56777666665432 1112333444455665 88889999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000718 343 NALVGVLGKLVAKA 356 (1334)
Q Consensus 343 navve~ig~ii~~~ 356 (1334)
..+++++-.++..+
T Consensus 206 ~~~L~iL~~ll~~~ 219 (262)
T PF14225_consen 206 RKTLQILKVLLPHV 219 (262)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999998553
No 177
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.02 E-value=9.1e+02 Score=27.89 Aligned_cols=105 Identities=9% Similarity=0.054 Sum_probs=56.9
Q ss_pred CChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchH
Q 000718 1062 EDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIR 1141 (1334)
Q Consensus 1062 ~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~r 1141 (1334)
.++.+.+.|+..|.++...+.+ +-+ .++.+-...++.....+=+ +.-.++|..++...+++.
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~-~~~------------~i~~dlr~~v~~~~~~~g~-----~~~~~~l~~~~~~~~~~~ 202 (324)
T PF11838_consen 141 GDPECVAEARELFKAWLDGNDS-PES------------SIPPDLRWAVYCAGVRNGD-----EEEWDFLWELYKNSTSPE 202 (324)
T ss_dssp T-HHHHHHHHHHHHHHHHTTT--TTS------------TS-HHHHHHHHHHHTTS-------HHHHHHHHHHHHTTSTHH
T ss_pred cchhHHHHHHHHHHHHhcCCcc-ccc------------ccchHHHHHHHHHHHHHhh-----HhhHHHHHHHHhccCCHH
Confidence 6777778887777776554211 000 3444555556666655521 223667777777777788
Q ss_pred hHHHHHHHHhccCCChhHHHHHHHhHHHHHHhhCchHHHHHHHHH
Q 000718 1142 QWEYISYCLSQLAFTEKGMKKLIESFKTYEHALSEDSVMDNFRNI 1186 (1334)
Q Consensus 1142 qwrdiafcLslL~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~I 1186 (1334)
+.+.+..||+.-+ ++..++++++-.-. .+.+....++..|..+
T Consensus 203 ~k~~~l~aLa~~~-d~~~~~~~l~~~l~-~~~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 203 EKRRLLSALACSP-DPELLKRLLDLLLS-NDKVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHHHHTT-S--HHHHHHHHHHHHC-TSTS-TTTHHHHHHHH
T ss_pred HHHHHHHhhhccC-CHHHHHHHHHHHcC-CcccccHHHHHHHHHH
Confidence 8888888887755 45555555553333 2224444455444444
No 178
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=29.96 E-value=1.2e+03 Score=30.62 Aligned_cols=214 Identities=10% Similarity=0.041 Sum_probs=139.3
Q ss_pred HHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcc-cchHHHHHHHHHHHHHcCCchhHHHH
Q 000718 208 VVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYD-FVVVHMADAVAGAEKKYADGSLATYL 286 (1334)
Q Consensus 208 ~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~e-hl~~~~Ae~l~~l~~~~~~~~l~~~i 286 (1334)
..|+||.+++.=. ..++++|.....-+|-..+--|-. .+-..++..|.-.| |.-..-+=++...++-++.=++...+
T Consensus 728 WMRIcfeLvd~Lk-s~nKeiRR~A~~tfG~Is~aiGPq-dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~l 805 (975)
T COG5181 728 WMRICFELVDSLK-SWNKEIRRNATETFGCISRAIGPQ-DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTL 805 (975)
T ss_pred HHHHHHHHHHHHH-HhhHHHHHhhhhhhhhHHhhcCHH-HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHH
Confidence 5688888887432 256788887777776665554421 23445666665333 33334444455555555555566666
Q ss_pred HHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccch
Q 000718 287 IREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASS 366 (1334)
Q Consensus 287 lrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~ 366 (1334)
+.+-- .|+. .--...-|+.+-|+.-..+.+-+.+.....+|-+-|-.+--.=|.--..+|.+++.. -...-+ .
T Consensus 806 m~dY~--TPe~-nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Ln---c~gtg~-e 878 (975)
T COG5181 806 MSDYE--TPEA-NVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLN---CPGTGD-E 878 (975)
T ss_pred Hhccc--Cchh-HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcC---CCCccc-H
Confidence 65432 2222 112334599999999999999999998888888888777777787777777776543 222111 1
Q ss_pred hhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHH
Q 000718 367 KSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLL 440 (1334)
Q Consensus 367 k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL 440 (1334)
. . --.++++|.--++|-+|+|=-++...+..+.. ++-. ..++.-...=|--.|+.|||.=-..+
T Consensus 879 d-a----~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~--~lg~---g~~m~Yv~qGLFHPs~~VRk~ywtvy 942 (975)
T COG5181 879 D-A----AIHLLNLLWPNILEPSPHVIQSFDEGMESFAT--VLGS---GAMMKYVQQGLFHPSSTVRKRYWTVY 942 (975)
T ss_pred H-H----HHHHHHHhhhhccCCCcHHHHHHHHHHHHHHH--Hhcc---HHHHHHHHHhccCchHHHHHHHHHHH
Confidence 1 1 46799999999999999987777666655544 2221 35677778889999999999765543
No 179
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=29.51 E-value=4.9e+02 Score=30.64 Aligned_cols=174 Identities=15% Similarity=0.171 Sum_probs=101.5
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHH----HhHHHHHHHHhcCC---ChhhHhhHHHHhhhhhh
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCD----ANLQLLFTVVESSP---SEIVRSNCTIALGDLAV 1005 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~----~~l~ll~~~le~s~---~~~vR~N~vi~lgDL~~ 1005 (1334)
.|.|++. ...+ +|+.++..|.-.|+++++-++..-. +-++.+|+.|.+.. +..+..-++-+|+-|+.
T Consensus 106 ~~~~fl~-ll~~-----~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 106 PYSPFLK-LLDR-----NDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp -HHHHHH-H-S------SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred hHHHHHH-HhcC-----CCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 4566665 4444 5788999999999999998776554 58899999996532 23455666777777753
Q ss_pred ccCcc-----cccchHHHhhhc-------CCCCHHHHHHHHHHHHHH-----HHccccccchhHHHHHHHhc-CCChhHH
Q 000718 1006 RFPNL-----LEPWTENMYARL-------KDPSMAVRKNAVLVLSHL-----ILNDMMKVKGYINEMAIRVE-DEDQRIS 1067 (1334)
Q Consensus 1006 rfpnl-----ve~~t~~ly~~L-------~D~~~~VR~~~l~vlthL-----Il~dmiKvKg~l~~~a~~l~-D~d~~I~ 1067 (1334)
. |.. =....+.+...| +-.++.+..+++.++=.| +...|.+-. -+..++..+- ..-+.|-
T Consensus 180 ~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvv 257 (312)
T PF03224_consen 180 S-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVV 257 (312)
T ss_dssp S-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHH
T ss_pred c-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHH
Confidence 2 111 133456666666 223356667777766544 333444433 3333333222 2357888
Q ss_pred HHHHHHHHHHhccCCc-----hhhhhhhHHHhhccCCCCChhHHHHHHHHHH
Q 000718 1068 NLAKLFFHELSKKGNN-----PIYNLLPDILGKLCNQNLKTESFCNIMQLLI 1114 (1334)
Q Consensus 1068 ~~a~~ff~eL~~K~~n-----~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl 1114 (1334)
.++-..|..|..+++. ++-..+|..+..|+....+.++...=++||-
T Consensus 258 Rv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 258 RVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 8888889998888752 3556677777777766666666666666654
No 180
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=29.29 E-value=1.4e+02 Score=29.94 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHH--cCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHH
Q 000718 341 IRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLER--CRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVA 418 (1334)
Q Consensus 341 lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR--~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~ 418 (1334)
+|..+|.++||+.- +.....+ ..|..++ +.+++.+ +-|-|||.|=.|+=++..||+.+. --
T Consensus 2 ~K~~lvrlianl~~---~~~~~Qd-----~vr~~~G-i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~--------eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCY---KNKEVQD-----LVRELGG-IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNP--------EN 64 (102)
T ss_pred cHHHHHHHHHHHHh---CCHHHHH-----HHHHcCC-hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCH--------HH
Confidence 57889999999962 2222211 1223445 4444444 458999999999999999999862 12
Q ss_pred HHHHhhccCCchhHHHHHH
Q 000718 419 EVAAGRLEDKSAIVRKSAL 437 (1334)
Q Consensus 419 ~~av~RL~DKSs~VRK~Ai 437 (1334)
...++.|+-+.+ ++..++
T Consensus 65 Q~~I~~L~~~~~-~~~~~L 82 (102)
T PF09759_consen 65 QEFIAQLEPQGV-ADNEEL 82 (102)
T ss_pred HHHHHhccccCC-cchHHH
Confidence 234555555554 444443
No 181
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=28.50 E-value=1.1e+03 Score=28.53 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCch
Q 000718 202 ENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGS 281 (1334)
Q Consensus 202 e~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~ 281 (1334)
++|...+.+-|...|++|+ ..|.+..+...+|... .+..+++ ..+.+.-+...+..+.+.++..+
T Consensus 85 ~d~~~~~i~~~i~~l~~~~--~~K~i~~~~l~~ls~Q--------~f~~~~~-----~~~~~~~l~~~l~~i~~~~~s~s 149 (372)
T PF12231_consen 85 DDFASFIIDHSIESLQNPN--SPKSICTHYLWCLSDQ--------KFSPKIM-----TSDRVERLLAALHNIKNRFPSKS 149 (372)
T ss_pred hHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcC--------CCCCccc-----chhhHHHHHHHHHHhhccCCchh
Q ss_pred hHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHh----HHHHHhCCCchhHHHHHHHHHHHHHHHHh
Q 000718 282 LATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIG----VLILHFGGESYKIRNALVGVLGKLVAKAF 357 (1334)
Q Consensus 282 l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is----~L~~~Ld~esY~lRnavve~ig~ii~~~l 357 (1334)
++.+-|. -+.+|-.+.|..|..+.. .++..+=+..-.+|.+ ...+|..+...+
T Consensus 150 i~~erL~----------------------i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~-a~~l~~~~~~~l 206 (372)
T PF12231_consen 150 IISERLN----------------------IYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTK-AISLLLEAKKCL 206 (372)
T ss_pred HHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHh
Q ss_pred cC--------cccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcc-hhhHH---HHHHHHHhhc
Q 000718 358 KD--------IEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVS-IGLWN---EVAEVAAGRL 425 (1334)
Q Consensus 358 ~~--------~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP-~~~~~---~v~~~av~RL 425 (1334)
.. .+.-+...... +-.+.+.+.|.+-+.+...|+ -|+|+|.-+.-.=.-+ ...|. +.+.+.-.-.
T Consensus 207 ~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~--~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cF 283 (372)
T PF12231_consen 207 GPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYK--LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCF 283 (372)
T ss_pred ChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcc--hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHh
Q ss_pred cCCchhHHHHHHHHHHHHH
Q 000718 426 EDKSAIVRKSALNLLVMML 444 (1334)
Q Consensus 426 ~DKSs~VRK~AiqLL~~lL 444 (1334)
++..+.||..|+.-=..++
T Consensus 284 n~~d~~~k~~A~~aW~~li 302 (372)
T PF12231_consen 284 NSSDPQVKIQAFKAWRRLI 302 (372)
T ss_pred cCCCHHHHHHHHHHHHHHH
No 182
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=28.22 E-value=1.5e+02 Score=31.85 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=61.3
Q ss_pred hhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCH-------HHHHHhHHHHHHHHhc-CCChhhHhhHHHHhhhhh
Q 000718 933 HCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDA-------DYCDANLQLLFTVVES-SPSEIVRSNCTIALGDLA 1004 (1334)
Q Consensus 933 ~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~-------~~c~~~l~ll~~~le~-s~~~~vR~N~vi~lgDL~ 1004 (1334)
.|...+..+... . .++.+..+|+.+|.++|-... +++-.++|-|++-+=+ ..++.+..-++-++..+.
T Consensus 67 ~W~~~Ll~~L~~---~-~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 67 QWLRALLSILEK---P-DPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred HHHHHHHHHHcC---C-CCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 334444444444 2 467889999999999997544 5566778777765522 222677888999999999
Q ss_pred hccCcccccchHHHhhh
Q 000718 1005 VRFPNLLEPWTENMYAR 1021 (1334)
Q Consensus 1005 ~rfpnlve~~t~~ly~~ 1021 (1334)
.+||+..-|+...+-..
T Consensus 143 ~~~ptt~rp~~~ki~~~ 159 (165)
T PF08167_consen 143 PHHPTTFRPFANKIESA 159 (165)
T ss_pred HHCCccccchHHHHHHH
Confidence 99999999998776543
No 183
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=28.15 E-value=2.2e+02 Score=29.31 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH---HHHHHHHhhccC---CchhHHHHHHHHHHHHHhhCC
Q 000718 375 QAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN---EVAEVAAGRLED---KSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 375 d~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~---~v~~~av~RL~D---KSs~VRK~AiqLL~~lL~~nP 448 (1334)
..-+..|..|+..-|+.|.-.||-+|--++.+..-|..... +.+...+.-+.+ ....||+.++.++...=..-|
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567888999999999999999999999998766542110 222233333433 467899999999988755433
No 184
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.71 E-value=7.2e+02 Score=30.19 Aligned_cols=161 Identities=15% Similarity=0.232 Sum_probs=88.1
Q ss_pred hHHHHHHHHhcCCCch----hHHHHHHHHHHHhhccCcchH-HHHhhhcchhcccCccHHHHHHHHHHHhhcCCChHHHH
Q 000718 561 STMPTLVQLMASSSAS----DVENTILLLMRCKQFQIDGAE-ACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETA 635 (1334)
Q Consensus 561 ~al~~i~~LL~Sk~~s----DV~EaI~Ff~~a~~f~I~~a~-~girkML~LVWskd~~V~~~vi~ay~~Ly~~~~~~~ia 635 (1334)
+++|.+.+-|.-..++ +...||.|+++=+-|.++-+. -|--||+. + .++--+++++.+ -|++|.
T Consensus 189 ~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia----~-e~~l~~L~Eal~-A~~dp~----- 257 (461)
T KOG4199|consen 189 KILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIA----K-EGILTALTEALQ-AGIDPD----- 257 (461)
T ss_pred hHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHH----H-hhhHHHHHHHHH-ccCCcc-----
Confidence 5677788766655555 334566666666666654332 22233321 0 123344444433 344432
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhccCCCCCHHhHHHHHHHHHHHhccCh---hhhhh-h
Q 000718 636 KNLLNLAIDSNIGDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSA---AVLGS-H 711 (1334)
Q Consensus 636 ~nLi~L~~~at~~dl~sLEeLl~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mla~a~~---~iv~~-~ 711 (1334)
.|.++.. +++-++-=.|+.....+.|-|+ .|.....-....-.+.-.+.++.+|+-+|..+. .||.. +
T Consensus 258 -~L~~l~~--tl~~lAVr~E~C~~I~e~GGl~-----tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg 329 (461)
T KOG4199|consen 258 -SLVSLST--TLKALAVRDEICKSIAESGGLD-----TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGG 329 (461)
T ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHccCHH-----HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcC
Confidence 2222211 2233333345555555555544 444554310111112334688999999998763 57764 6
Q ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHHHHhcc
Q 000718 712 LQDIIDIGFGRWAKVEPLLARTACIAIQRLS 742 (1334)
Q Consensus 712 ld~l~~iglg~~~~~D~~lar~~c~aL~~l~ 742 (1334)
++.|+...+.. ..||.++..+|.+++.|.
T Consensus 330 ~~~ii~l~~~h--~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 330 LDKIITLALRH--SDDPLVIQEVMAIISILC 358 (461)
T ss_pred hHHHHHHHHHc--CCChHHHHHHHHHHHHHH
Confidence 88888776654 579999999999998886
No 185
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=27.68 E-value=1.7e+02 Score=29.75 Aligned_cols=70 Identities=17% Similarity=0.212 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHc---CCCCchhhHHHHHHHHHHHhcCCcch--hhHH--HHHHHH----H--hhccCCchhHHHHHHHHH
Q 000718 374 KQAMLEILLERC---RDVSAYTRSRVLQVWAELCEEHSVSI--GLWN--EVAEVA----A--GRLEDKSAIVRKSALNLL 440 (1334)
Q Consensus 374 rd~lld~L~eR~---~D~n~yVRskvLQ~~~~L~e~~~iP~--~~~~--~v~~~a----v--~RL~DKSs~VRK~AiqLL 440 (1334)
...+++.|..|+ ...+..+-.|||+++..|+.+|.--. ..+. ..++.. . .+=.|.+..||+.|-+++
T Consensus 37 ~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~ 116 (125)
T PF01417_consen 37 CQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEIL 116 (125)
T ss_dssp HHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHH
Confidence 678999999999 56666677899999999999874211 1111 111111 0 122467778999998887
Q ss_pred HHH
Q 000718 441 VMM 443 (1334)
Q Consensus 441 ~~l 443 (1334)
.-|
T Consensus 117 ~lL 119 (125)
T PF01417_consen 117 ELL 119 (125)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 186
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=26.96 E-value=5.8e+02 Score=26.94 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=68.1
Q ss_pred HHHHhhhcchhcccCccHHHHHHHHHHHhhcCCChHHHHHHHHHHHhhcCcchhhHHHHHHHHHHhCC--CCC-------
Q 000718 597 EACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNIGDQAAMEFIVGTLVSKG--DVS------- 667 (1334)
Q Consensus 597 ~~girkML~LVWskd~~V~~~vi~ay~~Ly~~~~~~~ia~nLi~L~~~at~~dl~sLEeLl~~~~~~~--~I~------- 667 (1334)
++--..++.|.=++|..||...++|.-.- =++.-..-..||-.|+.+.+..| +|..-....+ .|.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~-k~~~l~pY~d~L~~Lldd~~frd-----eL~~f~~~~~~~~I~~ehR~~l 89 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW-KDPYLTPYKDNLENLLDDKTFRD-----ELTTFNLSDESSVIEEEHRPEL 89 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh-CcHHHHhHHHHHHHHcCcchHHH-----HHHhhcccCCcCCCCHHHHhHH
Confidence 33334466777888899999999986642 11111222589999998876432 3333333332 243
Q ss_pred -HHHHHHHHHHhhccCCCCCH-HhHHHHHHHHHHHhccChhhhhhhHHHHHHhhcCC
Q 000718 668 -MSTISALWDFFCFNVSGTTP-EKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGR 722 (1334)
Q Consensus 668 -~~vi~~LW~~~~~~~~~~s~-~~~r~Al~lL~Mla~a~~~iv~~~ld~l~~iglg~ 722 (1334)
|-++..|+..........+. ..||.| ||+.++.-..+ .+..++++++++
T Consensus 90 ~pvvlRILygk~~~~~~~~~~~~~rR~a--IL~~L~~l~~~----El~~Fl~l~~~p 140 (141)
T PF07539_consen 90 MPVVLRILYGKMQSRKGSGSKKASRRAA--ILRFLAGLSEE----ELGLFLDLMLEP 140 (141)
T ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHH--HHHHHhCCCHH----HHHHHHHHHhcc
Confidence 56777888777533333333 377888 78888765543 445667766654
No 187
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=26.92 E-value=1.8e+02 Score=35.57 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=26.0
Q ss_pred hccCcccccchHHHhhhcCCCCHHHHHHHHHHHHH
Q 000718 1005 VRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSH 1039 (1334)
Q Consensus 1005 ~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlth 1039 (1334)
.-||.|-+.-.+.-+.+-.|.|..||++|+.=|--
T Consensus 53 k~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~ 87 (460)
T KOG2213|consen 53 KHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPL 87 (460)
T ss_pred hhCchhhhHHHHhhhccccccchhhHHHHHhccch
Confidence 34666666667777778889999999999864433
No 188
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=26.58 E-value=1.3e+03 Score=29.68 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=74.5
Q ss_pred chhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccCCChhHHHH
Q 000718 1083 NPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTEKGMKK 1162 (1334)
Q Consensus 1083 n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~ek~ikK 1162 (1334)
+.+|.-+-.-+++++..++++++=++-..-+.--++=| |+=-++||||..+.+-. -..++|+|.+.+.
T Consensus 376 d~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE-~IgDiie~l~~~~~kk~-----------~~~~~fse~~~~e 443 (533)
T COG1283 376 DRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLE-HIGDIIERLLELADKKI-----------ANGRAFSEDGLEE 443 (533)
T ss_pred HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHH-----------hcCCCCCHHHHHH
Confidence 45555555666778877888888777666655555443 55666667777765541 1357889999888
Q ss_pred HHHhHHHHHHhhCchHHHHHHHHHHHHhhhcC--ChhhhHHHHHHHHHHHHHhhhchhhH
Q 000718 1163 LIESFKTYEHALSEDSVMDNFRNIINKSKKFA--KPEVKVCIEEFEEKLNKYHTEKKDQE 1220 (1334)
Q Consensus 1163 L~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~--k~e~K~~i~EfE~kl~~~~~~g~e~~ 1220 (1334)
|.+-|..--+- +...+..+.+.=...+ --|-|..+.+.|.+..+.|-++..+.
T Consensus 444 l~~l~~~~~~n-----~~~a~~~l~~~D~~~ar~lv~~k~~~r~~e~~~~k~H~~Rl~~g 498 (533)
T COG1283 444 LDALFALTLEN-----LRLAISVLVTGDLELARRLVERKKRVRRLERRSSKRHLDRLRDG 498 (533)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 87766543222 2222222222211111 14567788999999999987766554
No 189
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=26.32 E-value=5.1e+02 Score=33.02 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=74.3
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHh---hcCCCccccCccccchHHHHHHHHHhhhhhHHH
Q 000718 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIG---RTNPKAYVKDTVGAENIGRFLVELADRLPKLIS 324 (1334)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~---~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl 324 (1334)
++-+|||.=..-.-+.+..|.+++.+..+| |++++-+|+++- ...|+- +|-..--|++.|+..|-...-.-=+
T Consensus 199 ~crsv~~aq~asp~ft~vyaALvAviNskf--P~IgElLlkrLilqf~r~f~R--nDk~~c~~~~kfiahLinq~VahEI 274 (739)
T KOG2140|consen 199 LCRSVMQAQAASPGFTPVYAALVAVINSKF--PQIGELLLKRLILQFKRSFRR--NDKVSCLNASKFIAHLINQQVAHEI 274 (739)
T ss_pred hHHHHHHHHhcCCCCcHHHHHHHHHHccCC--chHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566655555556778888888887665 678888888863 245553 7888889999999888655433222
Q ss_pred hhHhHHHHHhCC---CchhHHHHHHHHHHHHHHHHhc
Q 000718 325 TNIGVLILHFGG---ESYKIRNALVGVLGKLVAKAFK 358 (1334)
Q Consensus 325 ~~is~L~~~Ld~---esY~lRnavve~ig~ii~~~l~ 358 (1334)
-.+-.|.-+|+- .|.-+=-+++..||..+..+..
T Consensus 275 v~Leil~lLLe~PTddSvevaI~flkecGakL~~VSp 311 (739)
T KOG2140|consen 275 VALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSP 311 (739)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhCh
Confidence 234445555654 8888999999999998877644
No 190
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.30 E-value=3.1e+02 Score=35.91 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=85.7
Q ss_pred HhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHcCCCCchhhHH
Q 000718 316 ADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSR 395 (1334)
Q Consensus 316 ae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~n~yVRsk 395 (1334)
++-.-++|-+|.-.|..+|.++.-.+|.--++-+..++...-.- . -+... .+-+=.+.-+=.+|..+-||..
T Consensus 211 ~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~--i---P~~i~---~~ll~kI~d~~a~dt~s~VR~s 282 (1005)
T KOG1949|consen 211 AEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM--I---PPTIL---IDLLKKITDELAFDTSSDVRCS 282 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH--c---CHHHH---HHHHHHHHHHhhhccchheehh
Confidence 35566788999999999999999999997776666665442110 0 00110 1222223334457999999999
Q ss_pred HHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCCC
Q 000718 396 VLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPF 449 (1334)
Q Consensus 396 vLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf 449 (1334)
|...+..|..+ -+.|+ +..++....-.|.|+|.-||=++.++|..+ .++.|
T Consensus 283 vf~gl~~~l~np~sh~~--le~~Lpal~~~l~D~se~VRvA~vd~ll~i-k~vra 334 (1005)
T KOG1949|consen 283 VFKGLPMILDNPLSHPL--LEQLLPALRYSLHDNSEKVRVAFVDMLLKI-KAVRA 334 (1005)
T ss_pred HhcCcHHHHcCccchhH--HHHHHHhcchhhhccchhHHHHHHHHHHHH-Hhhhh
Confidence 99999999886 34554 446667555569999999999999998875 44444
No 191
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=26.05 E-value=2.2e+02 Score=29.32 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHcCCCCchhh--HHHHHHHHHHHhcCCcch--hhHH--HHHHHHH------hhccCCchhHHHHHHHHHH
Q 000718 374 KQAMLEILLERCRDVSAYTR--SRVLQVWAELCEEHSVSI--GLWN--EVAEVAA------GRLEDKSAIVRKSALNLLV 441 (1334)
Q Consensus 374 rd~lld~L~eR~~D~n~yVR--skvLQ~~~~L~e~~~iP~--~~~~--~v~~~av------~RL~DKSs~VRK~AiqLL~ 441 (1334)
-...++.|..|+.|..-.-| .|+|+++..|+.+|.--. ..+. .+++... .+=.|.+..||+.|-+++.
T Consensus 35 ~~~Im~~l~kRL~~~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d~~g~d~G~~VR~ka~~i~~ 114 (123)
T cd03571 35 FQEIMSMLWKRLNDKGKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYIDENGKDQGINVREKAKEILE 114 (123)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeCCCCCchhHHHHHHHHHHHH
Confidence 46788999999999866665 489999999999873211 1111 1111111 1224788999999998865
Q ss_pred H
Q 000718 442 M 442 (1334)
Q Consensus 442 ~ 442 (1334)
-
T Consensus 115 L 115 (123)
T cd03571 115 L 115 (123)
T ss_pred H
Confidence 4
No 192
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=25.59 E-value=1.8e+03 Score=29.77 Aligned_cols=201 Identities=16% Similarity=0.176 Sum_probs=136.0
Q ss_pred HHHHHHHHhhcccchHHHHHH-HHHH---HHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHH
Q 000718 249 CASIMHLIHKYDFVVVHMADA-VAGA---EKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLIS 324 (1334)
Q Consensus 249 ~~~IiqlL~~~ehl~~~~Ae~-l~~l---~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl 324 (1334)
-..|+.+|-.--...+||-.. +-.+ +.+||...|+..||==+-+.+..| ..-..-.|-+-+.|-+|-+..-..+.
T Consensus 362 Er~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD-qerhllVkvidriLyklDdlvrpYVh 440 (1172)
T KOG0213|consen 362 ERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED-QERHLLVKVIDRILYKLDDLVRPYVH 440 (1172)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc-hhhhhHHHHHHHHHHhhcccchhcee
Confidence 456777666666666666432 2222 235777777777776665555544 22334568888889999999988899
Q ss_pred hhHhHHHHHhCCCchhHHHHHHHHHHHHHHHH------hc-Ccc---cccchhhhhhh---------hHHHHHHHHHHHc
Q 000718 325 TNIGVLILHFGGESYKIRNALVGVLGKLVAKA------FK-DIE---GEASSKSVRLR---------TKQAMLEILLERC 385 (1334)
Q Consensus 325 ~~is~L~~~Ld~esY~lRnavve~ig~ii~~~------l~-~~~---~~~~~k~~~~~---------~rd~lld~L~eR~ 385 (1334)
+-+-++-++|=-|+|.-|+-=-|+|.|+.... .+ ..+ .++--|.+-.| -...++-.|..=+
T Consensus 441 kILvViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc 520 (1172)
T KOG0213|consen 441 KILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVC 520 (1172)
T ss_pred eeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 99999999999999999999999999987531 11 111 11111221000 0345555555555
Q ss_pred CCC-CchhhHHHHHHHHHHHhc-CCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhh-CCCC
Q 000718 386 RDV-SAYTRSRVLQVWAELCEE-HSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQH-NPFG 450 (1334)
Q Consensus 386 ~D~-n~yVRskvLQ~~~~L~e~-~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~-nPf~ 450 (1334)
.-. +.-.|---+.+.++||.. ++=-+.+...++++.-.-|.|.+.-||=-+-.-|+.+-+. .|||
T Consensus 521 ~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pyg 588 (1172)
T KOG0213|consen 521 GSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYG 588 (1172)
T ss_pred ccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcc
Confidence 544 444566678888888884 5544567889999999999999999998877777777663 6887
No 193
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=25.42 E-value=4.4e+02 Score=30.92 Aligned_cols=109 Identities=23% Similarity=0.303 Sum_probs=0.0
Q ss_pred hHHHHHhhhccCCCCCCchhhhhhHHHHHHhcCCcCCCCChHHHHHHHHHHHHHhhcCHHHHHHhHHHHH----------
Q 000718 912 LSEKAEKEIISGGSSQKNLIGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMIIDADYCDANLQLLF---------- 981 (1334)
Q Consensus 912 i~~i~E~eLl~g~~~~~sLL~~f~PlV~~iC~~~~~~~~~~~l~~~A~l~L~K~m~vs~~~c~~~l~ll~---------- 981 (1334)
+..+++ +|+... ..++.+|.|+.. .+|-+.- .|+++|.+=+-.+|....--....|
T Consensus 156 v~~lr~-~lld~t---~~l~~Ry~amF~--LRn~g~E--------eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~ 221 (289)
T KOG0567|consen 156 VHELRA-ELLDET---KPLFERYRAMFY--LRNIGTE--------EAINALIDGLADDSALFRHEVAFVFGQLQSPAAIP 221 (289)
T ss_pred HHHHHH-HHHhcc---hhHHHHHhhhhH--hhccCcH--------HHHHHHHHhcccchHHHHHHHHHHHhhccchhhhH
Q ss_pred ----HHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHH
Q 000718 982 ----TVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHL 1040 (1334)
Q Consensus 982 ----~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthL 1040 (1334)
.+++...+|-||.=+.=|||=.+- |.-++-|=.-+.|+++.||+.|...|.-+
T Consensus 222 ~L~k~L~d~~E~pMVRhEaAeALGaIa~------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 222 SLIKVLLDETEHPMVRHEAAEALGAIAD------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred HHHHHHHhhhcchHHHHHHHHHHHhhcC------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
No 194
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=25.41 E-value=1.2e+03 Score=29.44 Aligned_cols=139 Identities=19% Similarity=0.198 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHHHHhhcC-----HHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchH----HHhhhc
Q 000718 952 PELQASAMLALCRFMIID-----ADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTE----NMYARL 1022 (1334)
Q Consensus 952 ~~l~~~A~l~L~K~m~vs-----~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~----~ly~~L 1022 (1334)
..=+..|+--|-+++|-. .+|..+=|-++|.+|..+.++++|.=++=.|+-+|...|.-+..++. .+-.+=
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 456778888899999988 78888889999999999999999999999999999999887777754 444555
Q ss_pred CCCCHHHHHH----HHHHHHHHHHccccccchhHHHHHHHhcCCChhHHHHHHHHHHHHhccC-CchhhhhhhHHHhhc
Q 000718 1023 KDPSMAVRKN----AVLVLSHLILNDMMKVKGYINEMAIRVEDEDQRISNLAKLFFHELSKKG-NNPIYNLLPDILGKL 1096 (1334)
Q Consensus 1023 ~D~~~~VR~~----~l~vlthLIl~dmiKvKg~l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~-~n~iyn~~pdiis~L 1096 (1334)
.|..+.|=+- |+.+++... +--.|.-++.||...|..+.-++-...++|-..= ..-+-|++||+.=-+
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~------P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~ 453 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHL------PLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCV 453 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhC------chhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHH
Confidence 6766644433 233332211 1223344666666677666666655555554441 144666666665444
No 195
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=25.13 E-value=1.3e+02 Score=30.67 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=45.0
Q ss_pred ChhhHhhHHHHhhhhhhccCcccccchHHHhhhc---CCCCHHHHHHHHHHHHHHHHccccccch
Q 000718 989 SEIVRSNCTIALGDLAVRFPNLLEPWTENMYARL---KDPSMAVRKNAVLVLSHLILNDMMKVKG 1050 (1334)
Q Consensus 989 ~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L---~D~~~~VR~~~l~vlthLIl~dmiKvKg 1050 (1334)
+...-...+--++.+++-+ .-...-.+.|..|| ..++..+..-||.+|-||+.||=-.+..
T Consensus 16 ~~gp~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~ 79 (125)
T PF01417_consen 16 PWGPPGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVD 79 (125)
T ss_dssp SSS--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHH
T ss_pred CCCcCHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHH
Confidence 3356667777777777655 44555678899999 8888999999999999999999764433
No 196
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=24.50 E-value=3.2e+02 Score=26.76 Aligned_cols=67 Identities=16% Similarity=0.241 Sum_probs=45.8
Q ss_pred HHHhHHHHHHhhCchHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHH---Hhhhchhh-HHHHHHHHHhhh
Q 000718 1163 LIESFKTYEHALSEDSVMDNFRNIINKSKKFAKPEVKVCIEEFEEKLNK---YHTEKKDQ-EATTRNAQIHQQ 1231 (1334)
Q Consensus 1163 L~e~~~~y~dkL~d~~V~~~F~~Ii~k~kk~~k~e~K~~i~EfE~kl~~---~~~~g~e~-~~~~~~~~~~~~ 1231 (1334)
+.|.-....+.+.+.+.|..|+..-.+... .|+.+.++++|..+=.+ ....|... +...++.+....
T Consensus 2 I~~~a~eL~~~I~~s~ey~~~~~a~~~l~~--d~e~~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~~~ 72 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEYKRYKAAEEALEA--DPEAQKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQELQE 72 (108)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHHHC--SHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHH
Confidence 345566677888888999999988887766 89999999999985444 44445443 344444444333
No 197
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=24.41 E-value=2.2e+02 Score=28.33 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCCchhHHHHHHHHHHHhhccCcchHHHHhhhcchhcccCccHHHHHHHHHHHhh
Q 000718 547 ASLEAGLRFSKCVSSTMPTLVQLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIY 626 (1334)
Q Consensus 547 ~yl~dal~Fi~~i~~al~~i~~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd~~V~~~vi~ay~~Ly 626 (1334)
.+|++|+.=+.....--....+-+.++...|+.|+|-= ++.|..+++-|+ .||+.+++||++|.
T Consensus 30 d~L~~al~~Vn~~Q~~A~~~~~~~~~G~~~dlhevmIA--------~~kA~ls~q~~v--------qVRNKlveAYqEIM 93 (97)
T PRK03907 30 KLLKQSINELNKTQEQSEKALADIATGQVKDLHQAAIA--------IGKAETSMKLML--------EVRNKAISAYKEIL 93 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH--------HHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 35666665555555544555555555555577776633 345556666665 78999999999873
No 198
>PF11422 IBP39: Initiator binding protein 39 kDa; InterPro: IPR024238 Initiator binding protein 39kDa (IBP39) recognises the initiator (Inr), which in Trichomonas vaginalis is solely responsible for transcription start site selection. IBP39 consists of an N-terminal Inr binding domain, a flexible linker, and a C-terminal domain. The C-terminal domain interacts with the RNAP II large subunit C-terminal domain. Binding of IBP39 to Inr recruits RNAP II and initiates transcription []. This entry represents the C-terminal domain.; PDB: 1Q88_A 1Q87_B 1Q89_A.
Probab=24.39 E-value=1.2e+02 Score=33.19 Aligned_cols=53 Identities=19% Similarity=0.375 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHhhC
Q 000718 393 RSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRL-EDKSAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 393 RskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL-~DKSs~VRK~AiqLL~~lL~~n 447 (1334)
|..|++.|.+|++.+.|---..-.....|..|. .++ +==+||+++|+.+|..-
T Consensus 18 k~~vi~~W~eiv~~~~i~av~~~~Fi~~aa~~f~q~~--q~~~Na~~~I~~il~~k 71 (181)
T PF11422_consen 18 KRNVISIWEEIVQNHGIFAVSLDFFIKKAANRFKQPS--QSLKNAIQVIQYILTPK 71 (181)
T ss_dssp HHHHHHHHHHHHSSSS--EEEHHHHHHHHHHHHS-TT--S-HHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHHhcCCCcceeeHHHHHHHHHHHhcccc--ccccchHHHHHHHHcCC
Confidence 789999999999976543333456678888888 554 44589999999998853
No 199
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=24.32 E-value=2.9e+02 Score=29.04 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=73.6
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhc-CCChhHH
Q 000718 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVE-DEDQRIS 1067 (1334)
Q Consensus 995 N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~-D~d~~I~ 1067 (1334)
..++-+||+.-.-++--..=...|=.+|..+++.|...||.+|--++.|.=.++.-++ -+|.+++. .+++.|+
T Consensus 23 ~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk 102 (142)
T cd03569 23 ASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVR 102 (142)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHH
Confidence 4567788888665554444467788899999999999999999999999655554444 45777665 5778899
Q ss_pred HHHHHHHHHHhccCC-chhhhhhhHHHhhcc
Q 000718 1068 NLAKLFFHELSKKGN-NPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1068 ~~a~~ff~eL~~K~~-n~iyn~~pdiis~Ls 1097 (1334)
+-+...+.+++.--+ .+=|..+.++-..|.
T Consensus 103 ~kil~li~~W~~~f~~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 103 QKILELIQAWALAFRNKPQLKYVVDTYQILK 133 (142)
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHHHHHH
Confidence 888888888776422 345555555555553
No 200
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.05 E-value=1.3e+03 Score=27.51 Aligned_cols=193 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhH
Q 000718 248 SCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNI 327 (1334)
Q Consensus 248 ~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~i 327 (1334)
...++++.+.. .+++.-+++++.-+..+-.+..-....+.-++.-.+.- .+..+.+-+..|-..|++.-|.+.---+
T Consensus 6 ~~~~~L~~l~~-~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~--~~~~~~~~~~~~~kGl~~kk~~vR~~w~ 82 (339)
T PF12074_consen 6 LHASMLSSLPS-SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL--SSELPKKVVDAFKKGLKDKKPPVRRAWL 82 (339)
T ss_pred HHHHHHHhCCC-cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh--CcCCCHHHHHHHHHHhcCCCCcHHHHHH
Q ss_pred hHHHHHhC----CCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHH---------------------
Q 000718 328 GVLILHFG----GESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILL--------------------- 382 (1334)
Q Consensus 328 s~L~~~Ld----~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~--------------------- 382 (1334)
..+...|- +..-..=.+++..+..++.+...+.-........ .+.+-+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~-----~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ 157 (339)
T PF12074_consen 83 LCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGEL-----VGAYVLLALSSWKLDKIDSKNISFWSLAL 157 (339)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccH-----HHHHHHHHhccccchhhhhhhhhhhhhcc
Q ss_pred ---------HHcCCC--CchhhHHHHHHHHHHHh--cCCcchhhHHHHHHHHHhhccCC--chhHHHHHHHHHHHHHhhC
Q 000718 383 ---------ERCRDV--SAYTRSRVLQVWAELCE--EHSVSIGLWNEVAEVAAGRLEDK--SAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 383 ---------eR~~D~--n~yVRskvLQ~~~~L~e--~~~iP~~~~~~v~~~av~RL~DK--Ss~VRK~AiqLL~~lL~~n 447 (1334)
+|++-. ..-.-.-+++.+..+.. .....-..........+-=+-.. +..|||.|++.+++++..+
T Consensus 158 ~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 158 DPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred CCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Q ss_pred C
Q 000718 448 P 448 (1334)
Q Consensus 448 P 448 (1334)
|
T Consensus 238 ~ 238 (339)
T PF12074_consen 238 P 238 (339)
T ss_pred h
No 201
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=23.86 E-value=1.7e+03 Score=29.08 Aligned_cols=126 Identities=17% Similarity=0.096 Sum_probs=82.9
Q ss_pred cCCChhhHhhHHHHhhhhhhccCccccc--chHHHhhhcCCCCHHHHHHHHHHHHHHHHcccc---------ccchhHHH
Q 000718 986 SSPSEIVRSNCTIALGDLAVRFPNLLEP--WTENMYARLKDPSMAVRKNAVLVLSHLILNDMM---------KVKGYINE 1054 (1334)
Q Consensus 986 ~s~~~~vR~N~vi~lgDL~~rfpnlve~--~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmi---------KvKg~l~~ 1054 (1334)
+.-++.||.=++.+|+|.+--+|..+=. +..+.--.|.|-+..||.+.+.+|-||+..+-- +.|..|.+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~rILE 364 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDRILE 364 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 5566788888888888888877765432 344555689999999999999999999876432 23444444
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHhccCCchhhhhhhHHHhhccCCCCChhHHHHHHHHHHhhh
Q 000718 1055 MAIRVEDEDQRISNLAKLFFHELSKKGNNPIYNLLPDILGKLCNQNLKTESFCNIMQLLIGFI 1117 (1334)
Q Consensus 1055 ~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i 1117 (1334)
| |..|.|- +|-.+-.-..+|..+| -+-+-=+.|++.+- -...++.|.++-+++..+-
T Consensus 365 ~--~r~D~d~-VRi~sik~l~~lr~lg--~L~~SeIlIvsscm-lDi~pd~r~~~~E~v~~ic 421 (740)
T COG5537 365 F--LRTDSDC-VRICSIKSLCYLRILG--VLSSSEILIVSSCM-LDIIPDSRENIVESVESIC 421 (740)
T ss_pred H--Hhhccch-hhHHHHHHHHHHHHhc--ccchhHHHHHHHHH-hcCCCcchHHHHHHHHHHH
Confidence 4 4566666 6766666777787776 44444556666662 1334444555444444433
No 202
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=23.51 E-value=1.3e+03 Score=32.14 Aligned_cols=63 Identities=21% Similarity=0.222 Sum_probs=50.6
Q ss_pred HHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH-HHHHHHHhhccCCchhHHHHHHHHHHHHHhh
Q 000718 382 LERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1334)
Q Consensus 382 ~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1334)
.-|.+|+-|-.|+--+|-+.-=|.. +|--+.+ ..++-..=-|.||.+.||+..++-|..|..+
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~--yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~ 356 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKS--YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEK 356 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHh--ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhc
Confidence 4699999999999998876655543 5643333 5677777789999999999999999999887
No 203
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=23.48 E-value=90 Score=25.18 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=24.5
Q ss_pred hHHHHHHHHhcCCChhhHhhHHHHhhhhh
Q 000718 976 NLQLLFTVVESSPSEIVRSNCTIALGDLA 1004 (1334)
Q Consensus 976 ~l~ll~~~le~s~~~~vR~N~vi~lgDL~ 1004 (1334)
-+|.|.+.|. ++++.|+.+++-+++=|+
T Consensus 13 ~i~~Lv~ll~-~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLK-SPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTT-SSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHh
Confidence 4789999995 999999999999998775
No 204
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=23.30 E-value=4.7e+02 Score=34.06 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=90.0
Q ss_pred chHHHHHHHHHhhhhhHHHhhHhHHHHHhCCCchhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhHHHHHHHHHHHc
Q 000718 306 ENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC 385 (1334)
Q Consensus 306 Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~esY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~ 385 (1334)
+++++-+..|..- |+- ..-+..|++.|--++-.+-.+++.++.|+|.+... -..+=. +.+++|.|++-+
T Consensus 402 ~s~srsV~aL~tg-~~~-~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~-----~kskfl----~~ngId~l~s~~ 470 (678)
T KOG1293|consen 402 KSFSRSVSALRTG-LKR-NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSN-----LKSKFL----RNNGIDILESML 470 (678)
T ss_pred HHHHHHHHHHHcC-Ccc-chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhccc-----HHHHHH----HcCcHHHHHHHh
Confidence 4444444444443 322 12345677777777888889999999999987532 112223 788999999999
Q ss_pred CCCCchhhHHHHHHHHHHHhcCC-----cchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 000718 386 RDVSAYTRSRVLQVWAELCEEHS-----VSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQ 445 (1334)
Q Consensus 386 ~D~n~yVRskvLQ~~~~L~e~~~-----iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~ 445 (1334)
-|.-+.+|.+++-++.+++=+.. -|+++ --+...+.=.+|+---|--+++|||..|.-
T Consensus 471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k--i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK--IPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHH--hhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999875432 12222 224455666899999999999999998754
No 205
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=22.71 E-value=9.3e+02 Score=25.50 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHHHHhhcCCCccccCccc
Q 000718 225 ADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVG 304 (1334)
Q Consensus 225 ~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g 304 (1334)
+..+..+.+.+...+....+-..+-++++..|..+.+ .+-+.++..+.++|... + ...+ ..+-.-
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~--~f~~~ll~~~~~~f~~~------~------e~~~-~~~~~~ 95 (200)
T smart00543 31 KNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNP--DFGSLLLERLQEEFEKG------L------ESEE-ESDKQR 95 (200)
T ss_pred HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH------H------HHHH-HHhhhh
Confidence 3455555555544444444444444555555543321 33333333333333211 0 0001 134455
Q ss_pred cchHHHHHHHHHhh---hhhHHHhhHhHHHHHhCCC-------chhHHHHHHHHHHHHHHHHhcCcccccchhhhhhhhH
Q 000718 305 AENIGRFLVELADR---LPKLISTNIGVLILHFGGE-------SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTK 374 (1334)
Q Consensus 305 ~Kn~s~FL~~Lae~---~P~lvl~~is~L~~~Ld~e-------sY~lRnavve~ig~ii~~~l~~~~~~~~~k~~~~~~r 374 (1334)
.++...||.+|-.. .+..++.-+..++..+..+ +..+=+.++..+|..+.. ...+.. -
T Consensus 96 ~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~--------~~~~~~----~ 163 (200)
T smart00543 96 RLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER--------EKSPKL----L 163 (200)
T ss_pred HHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC--------cccHHH----H
Confidence 68888998886543 3456666666666665442 223334455556655422 222333 5
Q ss_pred HHHHHHHHHHcCCC
Q 000718 375 QAMLEILLERCRDV 388 (1334)
Q Consensus 375 d~lld~L~eR~~D~ 388 (1334)
+.+++.++.-+.+.
T Consensus 164 ~~~l~~l~~~~~~~ 177 (200)
T smart00543 164 DEILERLQDYLLKK 177 (200)
T ss_pred HHHHHHHHHHHhcc
Confidence 77888888877764
No 206
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=22.65 E-value=1.4e+03 Score=28.27 Aligned_cols=167 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHhccCCch---hhhhhhHHHhhccCCCCChhHHHHHHHHHHhhhh------hhhh
Q 000718 1052 INEMAIRVEDEDQRISNLAKLFFHELSKKGNNP---IYNLLPDILGKLCNQNLKTESFCNIMQLLIGFIK------KDKQ 1122 (1334)
Q Consensus 1052 l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~~n~---iyn~~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~------Kdkq 1122 (1334)
+..+..++.=||++=|+..+.|++.+-.|-++- |...+-+++.++-......---..+++++-++|+ |+.|
T Consensus 135 i~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh 214 (409)
T PF01603_consen 135 IKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEH 214 (409)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHH
Q ss_pred HHHHHHHHHhhhhcccchHh-HHHHHHHHhcc-----CCChhHHHHHHHhHHHHHHhhCchHHHHHHHHHHHHh-hhcCC
Q 000718 1123 MEALVEKLCNRFSGVTDIRQ-WEYISYCLSQL-----AFTEKGMKKLIESFKTYEHALSEDSVMDNFRNIINKS-KKFAK 1195 (1334)
Q Consensus 1123 ~e~LveKLc~Rf~~~~~~rq-wrdiafcLslL-----~~~ek~ikKL~e~~~~y~dkL~d~~V~~~F~~Ii~k~-kk~~k 1195 (1334)
..+..+.+-.+..+..-.. +..++||+.++ .+.+..++.|+-.|| ..+..=---|...+... .....
T Consensus 215 -~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP-----~t~s~Kev~FL~el~~il~~~~~ 288 (409)
T PF01603_consen 215 -KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWP-----KTNSQKEVLFLNELEEILEVLPP 288 (409)
T ss_dssp -HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS------SS-HHHHHHHHHHHHHHHTT--H
T ss_pred -HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCC-----CCCchhHHHHHHHHHHHHHhcCH
Q ss_pred hhhhHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 000718 1196 PEVKVCIEEFEEKLNKYHTEKKDQEATTRNA 1226 (1334)
Q Consensus 1196 ~e~K~~i~EfE~kl~~~~~~g~e~~~~~~~~ 1226 (1334)
.+....+.-+=.+|.+|- ..++-..+.+|
T Consensus 289 ~~f~~i~~~lf~~la~ci--~S~h~qVAErA 317 (409)
T PF01603_consen 289 EEFQKIMVPLFKRLAKCI--SSPHFQVAERA 317 (409)
T ss_dssp HHHHHHHHHHHHHHHHHH--TSSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCHHHHHHH
No 207
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=8.5e+02 Score=31.09 Aligned_cols=128 Identities=20% Similarity=0.189 Sum_probs=88.3
Q ss_pred cchHHHHHHHHHhhhhhHHHhhHhHHHHHhCC---CchhHHHHHHHHHHHHHHHHhcCcccc-c--chhh-------h-h
Q 000718 305 AENIGRFLVELADRLPKLISTNIGVLILHFGG---ESYKIRNALVGVLGKLVAKAFKDIEGE-A--SSKS-------V-R 370 (1334)
Q Consensus 305 ~Kn~s~FL~~Lae~~P~lvl~~is~L~~~Ld~---esY~lRnavve~ig~ii~~~l~~~~~~-~--~~k~-------~-~ 370 (1334)
+||+-..|+=+....-..-+..+..|-.+|=+ +.-.|| +++++..- . ..+. . .
T Consensus 119 ~k~letLls~C~kksrn~a~q~l~~lKDLfi~gllp~rklr-------------y~k~q~~lsk~v~~k~l~~~~fesfl 185 (821)
T COG5593 119 AKNLETLLSFCEKKSRNVAYQVLKNLKDLFISGLLPNRKLR-------------YFKNQPGLSKEVQNKYLKQRIFESFL 185 (821)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHhcccCcchhhH-------------hhhcCcchhhhhcchHHHHHHHHHHH
Confidence 67777777777777777666666666666433 222222 22222110 0 0000 0 0
Q ss_pred hhhHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHHHHHHHHHhhccCCchhHHHHHHHHHHHHHhhCC
Q 000718 371 LRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 371 ~~~rd~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
.+-|-.++++|+---+|---|||++++...-+|.+.+ |. ....++.+.+..|-||-.-|--.|=-+|-+|=..||
T Consensus 186 k~l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~--pe-qe~nLl~L~INKlGDk~~kvsskasY~ilkLe~~hP 260 (821)
T COG5593 186 KNLRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEAR--PE-QEVNLLHLFINKLGDKRDKVSSKASYVILKLELLHP 260 (821)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcC--hH-HHHHHHHHHHHhhccchhhhhhhhhHHHHHHHhcCC
Confidence 1117778888888899999999999999999998865 64 456899999999999999998888888888888888
No 208
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=22.17 E-value=8.3e+02 Score=31.90 Aligned_cols=185 Identities=11% Similarity=0.084 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCcccccccC----CCCCCcc--chhhHHHHHHHHHHHhccccccccCCCCc
Q 000718 127 HRNAFKIYTFFLISIVLAQEFNISSNNNPKVTASTRKK----QPVNSWN--WDPQRGRILNLIANSLEINLPLLFGSSDP 200 (1334)
Q Consensus 127 ~~~alkmy~yLl~~~~~~~e~~~~~~~~~~~~~k~kK~----~~~~~~~--W~~qr~~~L~~l~~~L~l~l~~Lw~~~~~ 200 (1334)
..+.+..|.|...|++......... +.+++-+- .....|. -+--.+.+++.+.-+.+.+ -.|...
T Consensus 246 ~~~~~~F~~~~~~wL~~~~~~~~~~-----~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~----~~~~~l 316 (629)
T PF10408_consen 246 LSRCLQFYNFVAQWLLRLADPSNQY-----PENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFN----NSPDLL 316 (629)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT--T-----TS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTST----T-TTTT
T ss_pred HHHHHHHHHHHHHHHHHHhcccccc-----cccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhc----CChhhh
Confidence 4567789999999999888321100 00011000 1122342 1345888888887777764 345555
Q ss_pred chhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHhhcc-chhhhHHHHHH-HHhhcccchHHHHHHHHHHHH---
Q 000718 201 DENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYH-YIEQSCASIMH-LIHKYDFVVVHMADAVAGAEK--- 275 (1334)
Q Consensus 201 ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~-h~~~~~~~Iiq-lL~~~ehl~~~~Ae~l~~l~~--- 275 (1334)
...-+.-++..|-.+|.+|.++|++.+|..+.++|-..+.... ...+....++. .=..-+||++.+-.+-.....
T Consensus 317 ~~~~~~~l~~f~i~fm~s~~~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~ 396 (629)
T PF10408_consen 317 SSQDLDELVTFCITFMGSPEYIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGA 396 (629)
T ss_dssp -T-THHHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-S
T ss_pred hhhhHHHHHHHHHHHhCChhhcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5667778888889999999999999999999999987766666 22222222222 111234555444444443332
Q ss_pred ------HcCCchhHHHHHHHHhhcCCCccccCccccchHHHHHHHHHhhhhhHHHhhHhHHHH
Q 000718 276 ------KYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLIL 332 (1334)
Q Consensus 276 ------~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lvl~~is~L~~ 332 (1334)
+|++..=+..|++.+=... .+..=+.++|+..|..+++-+..|+.
T Consensus 397 ~~qfydKFn~R~~i~~il~~lw~~~------------~~r~~~~~~~~~~~~~F~rFvn~liN 447 (629)
T PF10408_consen 397 STQFYDKFNIRYHISQILKYLWKNP------------EYREQFIKEAKENPPLFVRFVNMLIN 447 (629)
T ss_dssp SSSSTCHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CccchhcccchhhHHHHHHHHcCCH------------HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344556666664221 22223455666677777666655553
No 209
>PHA00438 hypothetical protein
Probab=22.13 E-value=2.4e+02 Score=26.85 Aligned_cols=70 Identities=14% Similarity=0.220 Sum_probs=52.8
Q ss_pred HHHHHHHhhccccccchhHHHHHHHHHHHHHhhccchhhhHHHHHHHHhhcccchHHHHHHHHHHHHHcCCchhHHHHHH
Q 000718 209 VRNAFLMFENATLLKDADTKDALCRIIGACATKYHYIEQSCASIMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIR 288 (1334)
Q Consensus 209 ~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~h~~~~~~~IiqlL~~~ehl~~~~Ae~l~~l~~~~~~~~l~~~ilr 288 (1334)
..|+-+++|||.-+ +.+-.+..+.| --+||.+.-.++-.+..|+..-+--.++|-++.-+ +.+..+|.
T Consensus 2 l~pI~~~l~np~Di--Pdvpraa~eyL---qvrfNasYl~~sG~i~~lR~~G~SE~~IaGfl~Gl-------~yAs~~ld 69 (81)
T PHA00438 2 LTPIKHLLENPNDI--PDVPRAAAEYL---QVRFNASYLEQSGEIRLLRQAGYSEAFIAGFLAGL-------QYASRTLD 69 (81)
T ss_pred cchHHHHhcCCccc--ccccHHHHHHH---HHHHhHHHHHHhhhHHHHHHcCCcHHHHHHHHHHH-------HHHHHHHH
Confidence 35788999999744 55666666666 34789999899999999999888889999998876 23445555
Q ss_pred HH
Q 000718 289 EI 290 (1334)
Q Consensus 289 EI 290 (1334)
|+
T Consensus 70 em 71 (81)
T PHA00438 70 EM 71 (81)
T ss_pred HH
Confidence 54
No 210
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.13 E-value=1e+03 Score=32.46 Aligned_cols=145 Identities=19% Similarity=0.148 Sum_probs=96.0
Q ss_pred ChHHHHHHHHHHHHHhh---cCHHHHHHhHHHHHHHHhcCCChhhHhhHHHHhhhhhhccCcccccchHHHhhhc----C
Q 000718 951 YPELQASAMLALCRFMI---IDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTENMYARL----K 1023 (1334)
Q Consensus 951 ~~~l~~~A~l~L~K~m~---vs~~~c~~~l~ll~~~le~s~~~~vR~N~vi~lgDL~~rfpnlve~~t~~ly~~L----~ 1023 (1334)
-|.|-.-|.++++||-- +++.+-..-+....+.+-.+.-|.+|.-++.+.+=.| =|.++-|.-|.+-..| .
T Consensus 463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas 540 (1005)
T KOG2274|consen 463 SPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLAS 540 (1005)
T ss_pred CHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHcc
Confidence 45555578888888754 4677778888888888888888889999999888877 5666667766655543 4
Q ss_pred CCCHHHHHHHHHHHHHHHHcc-----ccccchhHH---HHHHHhcCCChhHHHHHHHHHHHHhcc---CCchhhhhhhHH
Q 000718 1024 DPSMAVRKNAVLVLSHLILND-----MMKVKGYIN---EMAIRVEDEDQRISNLAKLFFHELSKK---GNNPIYNLLPDI 1092 (1334)
Q Consensus 1024 D~~~~VR~~~l~vlthLIl~d-----miKvKg~l~---~~a~~l~D~d~~I~~~a~~ff~eL~~K---~~n~iyn~~pdi 1092 (1334)
+.+..|=---+-+|+.-+.=| +.+-|=+=. -+++.-. ||-|.++++-+|.||... ..+..--.+|.+
T Consensus 541 ~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~--DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsl 618 (1005)
T KOG2274|consen 541 KSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSE--DPQVASLAQDLFEELLQIAANYGPMQERLIPSL 618 (1005)
T ss_pred cccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 555555444444555443221 222221111 2334444 558999999999998764 227788899999
Q ss_pred HhhccCC
Q 000718 1093 LGKLCNQ 1099 (1334)
Q Consensus 1093 is~Ls~~ 1099 (1334)
||-|..+
T Consensus 619 isil~~~ 625 (1005)
T KOG2274|consen 619 ISVLQLN 625 (1005)
T ss_pred HHHHcCc
Confidence 9999643
No 211
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.51 E-value=4.4e+02 Score=27.37 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHHHhcCCcchhhHH---HHHHHHHhhccCCchh----HHHHHHHHHHHHHhhC
Q 000718 375 QAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLWN---EVAEVAAGRLEDKSAI----VRKSALNLLVMMLQHN 447 (1334)
Q Consensus 375 d~lld~L~eR~~D~n~yVRskvLQ~~~~L~e~~~iP~~~~~---~v~~~av~RL~DKSs~----VRK~AiqLL~~lL~~n 447 (1334)
..-+..|..|+..-||.|-..||.++--++.+..-+..... +++.....-+.++... ||+.++.+|...=..-
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 45577899999999999999999999999998644432211 3444444444443332 9999999998876644
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 000718 448 PFGPQLRIASFEATLDEYR 466 (1334)
Q Consensus 448 Pf~~~L~~~~~~~~Le~~~ 466 (1334)
+..+.+ ..+.+.++..+
T Consensus 121 ~~~~~~--~~i~~~y~~Lk 137 (140)
T PF00790_consen 121 KSDPEL--SLIQDTYKRLK 137 (140)
T ss_dssp TTSTTG--HHHHHHHHHHH
T ss_pred CCCCCc--hHHHHHHHHHH
Confidence 444444 35555555544
No 212
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=21.36 E-value=2.7e+02 Score=28.89 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=68.8
Q ss_pred hHHHHhhhhhhccCcccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHccccccchhH------HHHHHHhcCCChh---
Q 000718 995 NCTIALGDLAVRFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKVKGYI------NEMAIRVEDEDQR--- 1065 (1334)
Q Consensus 995 N~vi~lgDL~~rfpnlve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKvKg~l------~~~a~~l~D~d~~--- 1065 (1334)
..++-+||+.-.-+.--..=...|=.+|..++|.|...||.+|--|+.|.=-++.-++ .+|.+++.++...
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 4555677776666554455567788899999999999999999999999866665554 3455655544322
Q ss_pred -HHHHHHHHHHHHhccC-CchhhhhhhHHHhhc
Q 000718 1066 -ISNLAKLFFHELSKKG-NNPIYNLLPDILGKL 1096 (1334)
Q Consensus 1066 -I~~~a~~ff~eL~~K~-~n~iyn~~pdiis~L 1096 (1334)
|++-+...+.+++.-- ..+=|..|.|....|
T Consensus 104 ~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 104 PVKEKILELLQEWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 7877777777766642 245566666555444
No 213
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.03 E-value=4.3e+02 Score=31.66 Aligned_cols=144 Identities=23% Similarity=0.284 Sum_probs=78.4
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHcccccc-chh---HHHHHHHhcCCChhHHHHHHHHHHHHhccC--Cchhhhhhh
Q 000718 1017 NMYARLKDPSMAVRKNAVLVLSHLILNDMMKV-KGY---INEMAIRVEDEDQRISNLAKLFFHELSKKG--NNPIYNLLP 1090 (1334)
Q Consensus 1017 ~ly~~L~D~~~~VR~~~l~vlthLIl~dmiKv-Kg~---l~~~a~~l~D~d~~I~~~a~~ff~eL~~K~--~n~iyn~~p 1090 (1334)
.+..-|+|++|.||+-|+..+.-|.-.+.=-+ +|+ |-.+..++-|.++ ++.-|.. ..++++|. -+.+..-||
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~a-lVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AEPAATA-LVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-ccHHHHH-HHHHHhhHHHHHHHHHHHH
Confidence 46778999999999999999888887621111 111 1125557777777 4443333 33444442 022222233
Q ss_pred HHHhh-ccCC-------------CC-ChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccCC
Q 000718 1091 DILGK-LCNQ-------------NL-KTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAF 1155 (1334)
Q Consensus 1091 diis~-Ls~~-------------~~-~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~ 1155 (1334)
..+.. +.++ ++ ..+++-.++---+. .+||-+..-++.++|..=.+ .-.+..++|+.++-|+-
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~-~~~~~~lm~l~~~~~d~~~n--~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLT-EKKDSGLMRLARAFCDKSYN--AYAEFHYLAPVFANLSQ 161 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcc-cccccchHHHHHHHhCcccc--cccchhHHHHHHHHHhh
Confidence 32222 1222 11 12233222222222 33666677778888765333 34578888888888887
Q ss_pred ChhHHHHHHH
Q 000718 1156 TEKGMKKLIE 1165 (1334)
Q Consensus 1156 ~ek~ikKL~e 1165 (1334)
.+.|=+-+.+
T Consensus 162 ~~~gR~l~~~ 171 (353)
T KOG2973|consen 162 FEAGRKLLLE 171 (353)
T ss_pred hhhhhhHhcc
Confidence 7776555554
No 214
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=20.78 E-value=2.1e+03 Score=28.93 Aligned_cols=99 Identities=12% Similarity=0.114 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHc-cCCCCCCchHHHHHHHHHHHHhcCCChHHH----HHHHH
Q 000718 727 EPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLIT-GFWLPDNIWYTAADKAISAIYTIHPTPETL----AVDLV 801 (1334)
Q Consensus 727 D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~-~~~~~~~~W~~~aeqaInaIy~l~~~Pd~l----~~~iI 801 (1334)
+..+.-++.-+|.+|...+..-.++=.++.++.-|.+++. +. .++ .+.-++|-++-.++.+|+.- -+.++
T Consensus 504 ~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~-~~d----Dl~LE~Vi~~gtla~d~~~A~lL~~sgli 578 (708)
T PF05804_consen 504 SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGA-SED----DLLLEVVILLGTLASDPECAPLLAKSGLI 578 (708)
T ss_pred cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCC-CCh----HHHHHHHHHHHHHHCCHHHHHHHHhCChH
Confidence 4445555555555554322111112234556666666665 32 222 35566666666667666531 12334
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCCCCCCCCccHhHHHHHHHHHHHHHH
Q 000718 802 KKSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAM 849 (1334)
Q Consensus 802 k~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsqllFivGhVAl 849 (1334)
..+..-+ ....+ +.....|++|+.++...
T Consensus 579 ~~Li~LL-~~kqe------------------DdE~VlQil~~f~~ll~ 607 (708)
T PF05804_consen 579 PTLIELL-NAKQE------------------DDEIVLQILYVFYQLLF 607 (708)
T ss_pred HHHHHHH-HhhCc------------------hHHHHHHHHHHHHHHHc
Confidence 4444333 22211 23467888888887643
No 215
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=20.73 E-value=1e+03 Score=25.17 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=47.4
Q ss_pred cCccccchHHHHHHHHHhh---hhhHHHhhHhHHHHHhCC--------CchhHHHHHHHHHHHHHHHHhcCcccccchhh
Q 000718 300 KDTVGAENIGRFLVELADR---LPKLISTNIGVLILHFGG--------ESYKIRNALVGVLGKLVAKAFKDIEGEASSKS 368 (1334)
Q Consensus 300 ~D~~g~Kn~s~FL~~Lae~---~P~lvl~~is~L~~~Ld~--------esY~lRnavve~ig~ii~~~l~~~~~~~~~k~ 368 (1334)
.+..-.++...|+.+|-.. .++.++.-+..|+..... .+..+=+.++..+|.-+. .....+.
T Consensus 98 ~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~-------~~~~~~~ 170 (209)
T PF02854_consen 98 SSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLE-------NSEESPK 170 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHH-------HCHHHHH
T ss_pred HHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHh-------cCCCchh
Confidence 3455678888999988764 677777777777777655 334444556666776653 0122222
Q ss_pred hhhhhHHHHHHHHHHHcCC
Q 000718 369 VRLRTKQAMLEILLERCRD 387 (1334)
Q Consensus 369 ~~~~~rd~lld~L~eR~~D 387 (1334)
. -+.+++.+..-...
T Consensus 171 ~----l~~~~~~~~~~~~~ 185 (209)
T PF02854_consen 171 A----LDEIFERLQKYANS 185 (209)
T ss_dssp H----HHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHh
Confidence 2 56677777666554
No 216
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=20.03 E-value=3.1e+02 Score=27.41 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=46.1
Q ss_pred hhHHHhhccCCCCChhHHHHHHHHHHhhhhhhhhHHHHHHHHHhhhhcccchHhHHHHHHHHhccCCCh
Q 000718 1089 LPDILGKLCNQNLKTESFCNIMQLLIGFIKKDKQMEALVEKLCNRFSGVTDIRQWEYISYCLSQLAFTE 1157 (1334)
Q Consensus 1089 ~pdiis~Ls~~~~~~~~f~~i~kfLl~~i~Kdkq~e~LveKLc~Rf~~~~~~rqwrdiafcLslL~~~e 1157 (1334)
|-+++..|+ .+.++.++++.+.+.+.+ +...+|+-+.+++..+..++.. .+.|.++-+-++.
T Consensus 2 f~~~L~~L~---~s~~~I~~lt~~~~~~~~---~a~~Iv~~i~~~~~~~~~~~kL-~~LYlindIl~n~ 63 (121)
T smart00582 2 FEQKLESLN---NSQESIQTLTKWAIEHAS---HAKEIVELWEKYIKKAPPPRKL-PLLYLLDSIVQNS 63 (121)
T ss_pred hHHHHHhcc---ccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcccee-hhHHhHHHHHHHH
Confidence 345666666 477899999999999984 5567999999999988766444 5777776665544
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=20.02 E-value=4.5e+02 Score=36.10 Aligned_cols=92 Identities=21% Similarity=0.254 Sum_probs=64.8
Q ss_pred CChhhHhhHHHHhhhhhhccCc-----ccccchHHHhhhcCCCCHHHHHHHHHHHHHHHHcc------------------
Q 000718 988 PSEIVRSNCTIALGDLAVRFPN-----LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILND------------------ 1044 (1334)
Q Consensus 988 ~~~~vR~N~vi~lgDL~~rfpn-----lve~~t~~ly~~L~D~~~~VR~~~l~vlthLIl~d------------------ 1044 (1334)
+.|..|-=+.|+||=|=--|+- .=+.-.+.||..|+|+.|.||.-|+--|.++|-++
T Consensus 612 ~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~ 691 (1387)
T KOG1517|consen 612 PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLD 691 (1387)
T ss_pred ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcch
Confidence 5788999999999987655442 22223689999999999999999999999999985
Q ss_pred cccc--chhHH----HHHHHhcCCChhHHHHHHHHHHHHhc
Q 000718 1045 MMKV--KGYIN----EMAIRVEDEDQRISNLAKLFFHELSK 1079 (1334)
Q Consensus 1045 miKv--Kg~l~----~~a~~l~D~d~~I~~~a~~ff~eL~~ 1079 (1334)
+-++ ...+. .++-.+.|-.+-++.-.-.+|+++.-
T Consensus 692 ~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 692 DERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred hhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 2222 22222 24456667777776665566666544
Done!