Query 000718
Match_columns 1334
No_of_seqs 219 out of 322
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 17:23:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000718.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_488-491//hhsearch_pdb/000718hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 1.0 1 1 105.6 50.4 727 174-1116 63-821 (852)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 89.0 47.4 360 668-1095 358-758 (852)
3 1b3u_A Protein (protein phosph 1.0 1 1 82.1 39.4 139 932-1078 440-586 (588)
4 1u6g_C TIP120 protein, CAND1; 1.0 1 1 79.8 66.0 157 931-1097 888-1053(1230)
5 2vgl_B AP-2 complex subunit be 1.0 1 1 77.9 41.7 160 264-448 32-192 (591)
6 2bpt_A Importin beta-1 subunit 1.0 1 1 74.8 50.6 112 328-447 182-297 (861)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 74.4 60.7 98 951-1052 944-1045(1230)
8 1qgr_A Protein (importin beta 1.0 1 1 69.0 51.4 111 328-446 175-289 (876)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 67.5 60.1 58 686-743 382-440 (861)
10 2vgl_A Adaptor protein complex 1.0 1 1 66.0 24.4 159 264-448 57-219 (621)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=105.60 Aligned_cols=727 Identities=14% Similarity=0.148 Sum_probs=334.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC--CHHHHHHH
Q ss_conf 4699999999998434434323888850208978999999974033224604399999999999995316--40315989
Q 000718 174 PQRGRILNLIANSLEINLPLLFGSSDPDENYLSFVVRNAFLMFENATLLKDADTKDALCRIIGACATKYH--YIEQSCAS 251 (1334)
Q Consensus 174 ~qr~~iL~~l~~~L~l~l~~Lw~~~~~ee~Fi~l~~~~~y~lLE~~~~~K~~~~r~~if~il~~~vk~y~--h~~~~~~~ 251 (1334)
.-|.-+...+.+.+. +-|..- .++--..+-..+...|..+ +..+|..+..+++..++... +-...-..
T Consensus 63 ~vR~~a~~~Lkn~i~----~~w~~~--~~~~~~~ik~~ll~~l~~~----~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~ 132 (852)
T 4fdd_A 63 PTRSLSGLILKNNVK----AHFQNF--PNGVTDFIKSECLNNIGDS----SPLIRATVGILITTIASKGELQNWPDLLPK 132 (852)
T ss_dssp HHHHHHHHHHHHHTT----TSGGGC--CHHHHHHHHHHHHTTTTCS----SHHHHHHHHHHHHHHHHHTTTTTCTTHHHH
T ss_pred HHHHHHHHHHHHHHH----HCCCCC--CHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 799999999999898----744779--9999999999999987499----899999999999999986481356899999
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997530032499999999999983995159999999860098752357411141999999998430569984286999
Q 000718 252 IMHLIHKYDFVVVHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLI 331 (1334)
Q Consensus 252 IiqlL~~~ehl~~~~Ae~v~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lil~~is~L~ 331 (1334)
+++++...+. .. ...+-.++..|+...+..+..+.. .+. +-.-+..|.
T Consensus 133 L~~~l~~~~~---~~-------------r~~al~~L~~i~~~~~~~~~~~~~-~~~---------------~~~il~~l~ 180 (852)
T 4fdd_A 133 LCSLLDSEDY---NT-------------CEGAFGALQKICEDSAEILDSDVL-DRP---------------LNIMIPKFL 180 (852)
T ss_dssp HHHHHSCSSH---HH-------------HHHHHHHHHHHHHHHTTHHHHCSS-SSC---------------HHHHHHHHT
T ss_pred HHHHHCCCCH---HH-------------HHHHHHHHHHHHHHHHHHHCHHHH-CCH---------------HHHHHHHHH
T ss_conf 9998709998---99-------------999999999999985787563431-332---------------999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC-CC
Q ss_conf 87279745578999999999998872176442102446446499999999987098992051799999999974387-65
Q 000718 332 LHFGGESYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHS-VS 410 (1334)
Q Consensus 332 ~~Ld~esY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~a-iP 410 (1334)
..|..++..+|.+.+.+++.++.. ..+..... .+.++..|.....|.++.||..+++++..|++... .-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~------~~~~~~~~----~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIIS------RTQALMLH----IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTT------TCHHHHTS----HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHC------CCHHHHHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 985679789999999999999864------63879988----99999999987179977899999999999998577989
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3219999999973306882468798999999999509999998835789889999999-624599988776457999878
Q 000718 411 IGLWNEVAEVAAGRLEDKSAIVRKSALNLLVMMLQHNPFGPQLRIASFEATLDEYRKK-LNGLEPDIHSESITDGLPSDR 489 (1334)
Q Consensus 411 l~~~~~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~nPf~~~L~~~~~~~~Le~~~~~-L~~l~~~~~~~~~~~~~~~~~ 489 (1334)
..+...++......+.|+...||..|+.++..+...... ...+..-+...... ++.|. ..+.+ .
T Consensus 251 ~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-----~~~~~~~~~~l~p~ll~~l~-~~e~d---------~ 315 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-----KDVLVRHLPKLIPVLVNGMK-YSDID---------I 315 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-----HHHHTTTHHHHHHHHHHHTS-CCHHH---------H
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH-----HHHHHHHHHHHHHHHHHHCC-CCHHH---------H
T ss_conf 988999999999870699689999999999998603657-----98878889889999998757-86767---------9
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 876899-9866514577677521110027898754444567899888001599-99999999999999999985999999
Q 000718 490 GTCNGD-GEVDDLNAEVVVQEQQESLTDSCLPLADEGIADKDSSVPDVGNLEQ-TRALVASLEAGLRFSKCVSSTMPTLV 567 (1334)
Q Consensus 490 ~~l~~~-~e~e~~~~ee~~~~~~ea~~~~~~~~~~e~~~~~~~~~~~~~~l~k-~~~~v~yl~da~~F~~~i~~ai~~i~ 567 (1334)
...+.+ +|+++.+++ . ..-.+.+ -...+..+..... -..+...+|.+.
T Consensus 316 ~~~~~d~~ed~~~dd~--~---------------------------~~~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~ 365 (852)
T 4fdd_A 316 ILLKGDVEGGSGGDDT--I---------------------------SDWNLRKCSAAALDVLANVYR-DELLPHILPLLK 365 (852)
T ss_dssp HHHHC-----------------------------------------CCCCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHH
T ss_pred HHHCCCCCCCCCCCCC--C---------------------------CCCHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_conf 9866984432224564--0---------------------------111699999999999987461-878999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98238980159999999998863367615889852011112467118999999999963599928999999997851692
Q 000718 568 QLMASSSASDVENTILLLMRCKQFQIDGAEACLHKMLPLVLSQDKSIYEAVENAFITIYVRKSPVETAKNLLNLAIDSNI 647 (1334)
Q Consensus 568 ~LL~Sk~~sDV~EaI~Ff~~a~~f~I~~a~~girkML~LVWskd~~V~~~vi~ay~~Lyl~~~~~~ia~nLi~L~~~as~ 647 (1334)
++| .+.+..+|++.+.++..+--... . .+
T Consensus 366 ~~l-------------------------------------~~~~~~~R~aa~~alg~i~~~~~-----~----~~----- 394 (852)
T 4fdd_A 366 ELL-------------------------------------FHHEWVVKESGILVLGAIAEGCM-----Q----GM----- 394 (852)
T ss_dssp HHH-------------------------------------TCSSHHHHHHHHHHHHHTTTTTH-----H----HH-----
T ss_pred HHH-------------------------------------CCCCHHHHHHHHHHHHHHHHCCH-----H----HH-----
T ss_conf 985-------------------------------------59988999999999999986356-----8----89-----
Q ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 22568999999998389999989999999860248999989679999999997325724-54431999999512888888
Q 000718 648 GDQAAMEFIVGTLVSKGDVSMSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAA-VLGSHLQDIIDIGFGRWAKV 726 (1334)
Q Consensus 648 ~dl~sLEeli~~~~~~~~I~~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~-iv~~~ld~l~~iglg~~~~~ 726 (1334)
...++.+ +..|..... +..+.-|..|...|+-++..-+. .....+..++...+......
T Consensus 395 --~~~l~~~--------------l~~l~~~l~----d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~ 454 (852)
T 4fdd_A 395 --IPYLPEL--------------IPHLIQCLS----DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS 454 (852)
T ss_dssp --GGGHHHH--------------HHHHHHHTT----CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS
T ss_pred --HHHHHHH--------------HHHHHHHCC----CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf --9879999--------------999998717----99889999999999999988611047899999999999998589
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHH
Q ss_conf 6799999999998403411100024551379999999882677799714999999999999507----994899999999
Q 000718 727 EPLLARTACIAIQRLSQEDKKKLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIH----PTPETLAVDLVK 802 (1334)
Q Consensus 727 D~~lar~~c~aL~~l~~~~k~~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaI~~Iy~l~----~~Pd~i~~~iIk 802 (1334)
++.....+|.+|..+.......+ .|.-..++..|...+... +..=..++-.+|.+|.... ..|+ .+..++.
T Consensus 455 ~~~vr~~a~~aL~~l~~~~~~~l-~~~l~~ll~~L~~~l~~~---~~~~~~~~~~ai~~l~~~~~~~~~~~~-~~~~l~p 529 (852)
T 4fdd_A 455 NKRVQEAACSAFATLEEEACTEL-VPYLAYILDTLVFAFSKY---QHKNLLILYDAIGTLADSVGHHLNKPE-YIQMLMP 529 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHGGGGCCHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHH
T ss_conf 88899999999999999736766-767999999999999883---747999999999999997424313678-9999889
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99997603569999998877778899987657689999999889999879889888999-99979999963433100246
Q 000718 803 KSLSAVFDYVGGEEPHNGIDCVGTSMPTSVQVSKLGRYLFILSHIAMNQLVYIESCVCE-IRKQKIKKEKMIADDQNIHS 881 (1334)
Q Consensus 803 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~LsrllfivGhVAlk~lv~lE~~~~~-lKrr~~~~ek~~~~k~~~~s 881 (1334)
.+.... .....++ ... ...+.-+-.++..+.....-|++.+... ++.-+..-.+.........
T Consensus 530 ~l~~~~-~~l~d~~-------------~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~- 593 (852)
T 4fdd_A 530 PLIQKW-NMLKDED-------------KDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD- 593 (852)
T ss_dssp HHHHHH-HHSCTTC-------------TTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHH-HHCCCCC-------------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 999998-7333046-------------999-999999999999974867988999999999999999999987533886-
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH--HHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 89988999986102443145530122323667998851205898777512--2245799998107767778857999999
Q 000718 882 NNNTNGDLPKDTSINAELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLI--GHCASFLSKFCRNFSLMNKYPELQASAM 959 (1334)
Q Consensus 882 ~~~~~~~~~~~~~~~~Elgl~taeD~~~e~i~~i~E~eLl~g~~~~~~LL--~~f~Plv~~iC~~p~~~~~~~~L~~~A~ 959 (1334)
..+ ..+.++ ..++ .+.+..+... + |+.. ..++ ..+.|++.....+ .++.+|..|.
T Consensus 594 --------~~~-~~d~~~-~~~~----l~~l~~l~~~--l-~~~~-~~~~~~~~~~~~l~~~l~~-----~~~~vr~~a~ 650 (852)
T 4fdd_A 594 --------QYE-APDKDF-MIVA----LDLLSGLAEG--L-GGNI-EQLVARSNILTLMYQCMQD-----KMPEVRQSSF 650 (852)
T ss_dssp --------TSC-CCCTHH-HHHH----HHHHHHHHHH--H-GGGG-HHHHHTCCHHHHHHHHTTC-----SSHHHHHHHH
T ss_pred --------CCC-CCCCHH-HHHH----HHHHHHHHHH--H-HHHH-HHHHCCCCHHHHHHHHHCC-----CCHHHHHHHH
T ss_conf --------668-876119-9999----9999789998--7-4769-9883677189999998389-----9844999999
Q ss_pred HHHHHHHHCCHHHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHCCCCC--HHH
Q ss_conf 99998840179989----88399999998329983567668998622310157655412387----764228999--899
Q 000718 960 LALCRFMIIDADYC----DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN----MYARLKDPS--MAV 1029 (1334)
Q Consensus 960 l~L~K~m~vs~~~c----~~~l~llf~~le~s~~~~vR~N~ii~lgDL~~rfpnlvep~t~~----ly~~L~D~~--~~V 1029 (1334)
.+++.+...-..-. ..-+|.+.+.+ ...++.+|.|++-++|+++.+++.-+.||.+. ++..|.+++ ..|
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~~lp~l~~~l-~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~ 729 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIADFMPILGTNL-NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL 729 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHHHHHHHHHTC-CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999816888987999999999876-94206899999999999999711767878999999999985799887207
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHH----HHCC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHCCCCCC
Q ss_conf 9999999999877054331105988887----7248-97359999999999984038831251266---78862058899
Q 000718 1030 RKNAVLVLSHLILNDMMKVKGYINEMAI----RVED-EDQRISNLAKLFFHELSKKGNNPIYNLLP---DILGKLCNQNL 1101 (1334)
Q Consensus 1030 R~~~l~vlthLil~dmiKvKg~l~~~a~----~l~D-~d~~I~~~a~~ff~eL~~K~~n~iyn~lp---diis~Ls~~~~ 1101 (1334)
+.|+...+..|....---++.++.+++. .|-+ .|..-+.-|-.-|..+-...|+.+...|+ +.|.+..++
T Consensus 730 ~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~-- 807 (852)
T 4fdd_A 730 LENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP-- 807 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC--
T ss_pred HHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCC--
T ss_conf 788999999999868897675589999999998653666079999999999999869186888899999998706899--
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 915799999998752
Q 000718 1102 KTESFCNIMQLLIGF 1116 (1334)
Q Consensus 1102 ~~e~f~~ImkfLl~~ 1116 (1334)
+ .+.+..+..++..
T Consensus 808 ~-~~l~~~~~~~l~~ 821 (852)
T 4fdd_A 808 K-DDLRDMFCKILHG 821 (852)
T ss_dssp C-HHHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHH
T ss_conf 7-8999999999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=89.04 Aligned_cols=360 Identities=13% Similarity=0.115 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999986024899998967999999999732572454431999999512888888679999999999840341110
Q 000718 668 MSTISALWDFFCFNVSGTTPEKSRAALSVLCMAAKSSAAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQEDKK 747 (1334)
Q Consensus 668 ~~vi~~LW~~~~~~~~~~s~~~~r~Al~lL~Mia~~~~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~~~k~ 747 (1334)
+.++..+-+... +.....|.+|+..||-++...++.+...+..++...+......++.+...+|.+|.+++.....
T Consensus 358 ~~l~~~l~~~l~----~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 433 (852)
T 4fdd_A 358 PHILPLLKELLF----HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVS 433 (852)
T ss_dssp HHHHHHHHHHHT----CSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999855----9988999999999999986356889987999999999871799889999999999999988611
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0024551379999999882677799714999999999999507994----899999999999976035699999988777
Q 000718 748 KLLLSYGSRVFATLESLITGFWLPDNIWYTAADKAISAIYTIHPTP----ETLAVDLVKKSLSAVFDYVGGEEPHNGIDC 823 (1334)
Q Consensus 748 ~~r~~~~~~if~~L~~~l~~~~~~~~~W~~~aeqaI~~Iy~l~~~P----d~i~~~iIk~~~~~~f~~~~~~~~~~~~~~ 823 (1334)
....+.-..++..|...+. +.. ..+.+.|..++-.+++.- ......|+..+...+ ...
T Consensus 434 ~~~~~~~~~ll~~L~~~L~-----d~~-~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~----------- 495 (852)
T 4fdd_A 434 QPPDTYLKPLMTELLKRIL-----DSN-KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKY----------- 495 (852)
T ss_dssp SCTTTTHHHHHHHHHHHHT-----CSS-HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHC-----------
T ss_pred CHHHHHHHHHHHHHHHHHH-----CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------
T ss_conf 0478999999999999985-----898-8899999999999999736766767999999999999-883-----------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHH
Q ss_conf 7889998765768999999988999987------9889888999999799999634331002468998899998610244
Q 000718 824 VGTSMPTSVQVSKLGRYLFILSHIAMNQ------LVYIESCVCEIRKQKIKKEKMIADDQNIHSNNNTNGDLPKDTSINA 897 (1334)
Q Consensus 824 ~~~~~~~~~~~~~LsrllfivGhVAlk~------lv~lE~~~~~lKrr~~~~ek~~~~k~~~~s~~~~~~~~~~~~~~~~ 897 (1334)
....+.-++-.+|.++-.. --|++.+...+...... . ++. +....
T Consensus 496 ---------~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~----------l-------~d~--~~~~~- 546 (852)
T 4fdd_A 496 ---------QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM----------L-------KDE--DKDLF- 546 (852)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHH----------S-------CTT--CTTHH-
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH----------C-------CCC--CHHHH-
T ss_conf ---------747999999999999997424313678999988999999873----------3-------304--69999-
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH---HHHHHHHC-----------CCCCC-CCCHHHHHHHHHHH
Q ss_conf 31455301223236679988512058987775122245---79999810-----------77677-78857999999999
Q 000718 898 ELGLAASEDAKLDTLSEKAEKEIISGGSSQKNLIGHCA---SFLSKFCR-----------NFSLM-NKYPELQASAMLAL 962 (1334)
Q Consensus 898 Elgl~taeD~~~e~i~~i~E~eLl~g~~~~~~LL~~f~---Plv~~iC~-----------~p~~~-~~~~~L~~~A~l~L 962 (1334)
...+.+..++.. .| ..+..... |.++.+.. +|..+ ..+..++.++.-++
T Consensus 547 ---------~~~~~l~~i~~~---~g----~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l 610 (852)
T 4fdd_A 547 ---------PLLECLSSVATA---LQ----SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLL 610 (852)
T ss_dssp ---------HHHHHHHHHHHH---HG----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf ---------999999999999---74----86798899999999999999999998753388666887611999999999
Q ss_pred HHHHHCCH-H---HH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH----HHHHCCCCCHHHHHH
Q ss_conf 98840179-9---89--88399999998329983567668998622310157655412387----764228999899999
Q 000718 963 CRFMIIDA-D---YC--DANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWTEN----MYARLKDPSMAVRKN 1032 (1334)
Q Consensus 963 ~K~m~vs~-~---~c--~~~l~llf~~le~s~~~~vR~N~ii~lgDL~~rfpnlvep~t~~----ly~~L~D~~~~VR~~ 1032 (1334)
+.+.-.-. + +. ...+++++..+ ..+++.||..+...+||++-.++.-+.||.+. ++..|.++++.||++
T Consensus 611 ~~l~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~ 689 (852)
T 4fdd_A 611 SGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNN 689 (852)
T ss_dssp HHHHHHHGGGGHHHHHTCCHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 7899987476998836771899999983-899844999999999999998168889879999999998769420689999
Q ss_pred HHHHHHHHHHC---CCCCCCHHH-HHHHHHHCCCC--HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999998770---543311059-88887724897--35999999999998403883125126678862
Q 000718 1033 AVLVLSHLILN---DMMKVKGYI-NEMAIRVEDED--QRISNLAKLFFHELSKKGNNPIYNLLPDILGK 1095 (1334)
Q Consensus 1033 ~l~vlthLil~---dmiKvKg~l-~~~a~~l~D~d--~~I~~~a~~ff~eL~~K~~n~iyn~lpdiis~ 1095 (1334)
++..+.++... ++-..=+.+ ..+...+.+++ ..+++-|-..+..|..+.|+.+-.+++.++-.
T Consensus 690 a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 690 ATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp HHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHH
T ss_conf 999999999971176787899999999998579988720778899999999986889767558999999
No 3
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=82.05 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-CHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 2245799998107767778857999999999988401-799-89883999999983299835676689986223101576
Q 000718 932 GHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-DAD-YCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPN 1009 (1334)
Q Consensus 932 ~~f~Plv~~iC~~p~~~~~~~~L~~~A~l~L~K~m~v-s~~-~c~~~l~llf~~le~s~~~~vR~N~ii~lgDL~~rfpn 1009 (1334)
..+.|.+.....+ .++.+|.+|+.+|++++.. ..+ +.+.-+|.+...+ .++++.+|..++-++|.++-.++.
T Consensus 440 ~~l~~~l~~~l~d-----~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~-~~~~~~~R~~a~~~l~~l~~~~~~ 513 (588)
T 1b3u_A 440 EKLNSLCMAWLVD-----HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS-GDPNYLHRMTTLFCINVLSEVCGQ 513 (588)
T ss_dssp HHHHHHHHHGGGC-----SSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT-TCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999999988259-----8199999999999999999684457888999999983-189879999999999999976698
Q ss_pred --CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHC---CCCCCCHHH-HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf --5541238776422899989999999999998770---543311059-88887724897359999999999984
Q 000718 1010 --LLEPWTENMYARLKDPSMAVRKNAVLVLSHLILN---DMMKVKGYI-NEMAIRVEDEDQRISNLAKLFFHELS 1078 (1334)
Q Consensus 1010 --lvep~t~~ly~~L~D~~~~VR~~~l~vlthLil~---dmiKvKg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~ 1078 (1334)
..+...+.+...|+|+++.||.+++..|..+... +++ ...+ .-+..++.|+|++++..|..-+..+.
T Consensus 514 ~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~--~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL--QSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999998667899862799999999999998653645--9999999998747996669999999999763
No 4
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=79.79 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22245799998107767778857999999999988401-----7998988399999998329983567668998622310
Q 000718 931 IGHCASFLSKFCRNFSLMNKYPELQASAMLALCRFMII-----DADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAV 1005 (1334)
Q Consensus 931 L~~f~Plv~~iC~~p~~~~~~~~L~~~A~l~L~K~m~v-----s~~~c~~~l~llf~~le~s~~~~vR~N~ii~lgDL~~ 1005 (1334)
+..|.|.+....... +..|..+.-+|....-. -..|.++-++.|+..++ +.+..+|+++.-++|-|+.
T Consensus 888 ~~~~lp~ll~~l~~~------~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~-~~~~~~r~~~a~~lg~l~~ 960 (1230)
T 1u6g_C 888 LPEYLPFVLQEITSQ------PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCE-CAEEGTRNVVAECLGKLTL 960 (1230)
T ss_dssp HHHHHHHHHHHHHSC------GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCC-CSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHC
T ss_conf 998899999987266------032498899999998238766677669999999998733-8304468999988756650
Q ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCC---CHHH-HHHHHHHCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 1576554123877642289998999999999999877054331---1059-88887724897359999999999984038
Q 000718 1006 RFPNLLEPWTENMYARLKDPSMAVRKNAVLVLSHLILNDMMKV---KGYI-NEMAIRVEDEDQRISNLAKLFFHELSKKG 1081 (1334)
Q Consensus 1006 rfpnlvep~t~~ly~~L~D~~~~VR~~~l~vlthLil~dmiKv---Kg~l-~~~a~~l~D~d~~I~~~a~~ff~eL~~K~ 1081 (1334)
..| ++..|.+-.+|.|+++.+|.+++..+.+++..-.-.+ -.++ ..++.++.|+|+.||..|-..+..+++..
T Consensus 961 ~~~---~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~ 1037 (1230)
T 1u6g_C 961 IDP---ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037 (1230)
T ss_dssp SSG---GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC
T ss_pred CCH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 676---88889999985699788999999999999706823358989998999998648985879999999999998428
Q ss_pred CCHHHHHHHHHHHHCC
Q ss_conf 8312512667886205
Q 000718 1082 NNPIYNLLPDILGKLC 1097 (1334)
Q Consensus 1082 ~n~iyn~lpdiis~Ls 1097 (1334)
|..+..++++++-.|-
T Consensus 1038 ~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 1038 PSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp GGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 5768977988989999
No 5
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=77.94 Aligned_cols=160 Identities=14% Similarity=0.140 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999983995159999999860098752357411141999999998430569984286999872797455789
Q 000718 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRN 343 (1334)
Q Consensus 264 ~~~Ae~v~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lil~~is~L~~~Ld~esY~lRn 343 (1334)
..+..++..+...++.+.+..++++-+ ++ .|..-=|....++..+++..|...+--++.+..-|.+++..+|.
T Consensus 32 ~~~~kli~~~~~G~d~~~~~~~vi~l~-----~s--~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~ 104 (591)
T 2vgl_B 32 EAVKKVIAAMTVGKDVSSLFPDVVNCM-----QT--DNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRA 104 (591)
T ss_dssp HHHHHHHHHHHTTCCCGGGHHHHHHTT-----SS--SCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH-----CC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999987998688999999881-----79--98999999999999986658068999999999776999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHH
Q ss_conf 99999999998872176442102446446499999999987098992051799999999974387653219-99999997
Q 000718 344 ALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCEEHSVSIGLW-NEVAEVAA 422 (1334)
Q Consensus 344 aVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e~~aiPl~~~-~~v~~~av 422 (1334)
..+.++|++. .. +. ...++..+..-..|.++|||.+|..++.+++... |-... ..++....
T Consensus 105 ~AL~~L~~i~-----~~-------~~----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~--p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 105 LAVRTMGCIR-----VD-------KI----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN--AQMVEDQGFLDSLR 166 (591)
T ss_dssp HHHHHHHTCC-----SG-------GG----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC-----HH-------HH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC--HHHCCCCCHHHHHH
T ss_conf 9999987589-----07-------78----9999999999817998589999999999998519--24144635899999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 33068824687989999999995099
Q 000718 423 GRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 423 ~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
..|.|+...||.+|+..|..+...+|
T Consensus 167 ~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 167 DLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 99679984399999999999976378
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=74.76 Aligned_cols=112 Identities=7% Similarity=0.077 Sum_probs=82.0
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999872797--45578999999999998872176442102446446499999999987098992051799999999974
Q 000718 328 GVLILHFGGE--SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCE 405 (1334)
Q Consensus 328 s~L~~~Ld~e--sY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e 405 (1334)
..+...+..+ +..+|.+.+.+++.++... . +..+. ... ++.++..|.+.+.|.+.-+|..+++++..+++
T Consensus 182 ~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~-~-~~~~~--~~~----~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~ 253 (861)
T 2bpt_A 182 IAIVQGAQSTETSKAVRLAALNALADSLIFI-K-NNMER--EGE----RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS 253 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC-H-HHHTS--HHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H-HHCCC--HHH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999841579998789999999999999999-9-87067--668----99999999998659988999999999999999
Q ss_pred CCC-CCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 387-6532199-99999973306882468798999999999509
Q 000718 406 EHS-VSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQHN 447 (1334)
Q Consensus 406 ~~a-iPl~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~n 447 (1334)
... .-..+.. .++......+.|....||..|+.++..+....
T Consensus 254 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98899999889999999999873772789999999999999878
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=74.44 Aligned_cols=98 Identities=19% Similarity=0.258 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH----HHHHHHCCCCC
Q ss_conf 85799999999998840179989883999999983299835676689986223101576554123----87764228999
Q 000718 951 YPELQASAMLALCRFMIIDADYCDANLQLLFTVVESSPSEIVRSNCTIALGDLAVRFPNLLEPWT----ENMYARLKDPS 1026 (1334)
Q Consensus 951 ~~~L~~~A~l~L~K~m~vs~~~c~~~l~llf~~le~s~~~~vR~N~ii~lgDL~~rfpnlvep~t----~~ly~~L~D~~ 1026 (1334)
+..+|..+.-|||+++.... +..+|.|.+.+ +++++.+|..++.+++.++-.-|.-++++. +.+..+|.|++
T Consensus 944 ~~~~r~~~a~~lg~l~~~~~---~~l~p~l~~~l-~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~ 1019 (1230)
T 1u6g_C 944 EEGTRNVVAECLGKLTLIDP---ETLLPRLKGYL-ISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPD 1019 (1230)
T ss_dssp STTHHHHHHHHHHHHHHSSG---GGTHHHHTTTS-SSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSS
T ss_pred CHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 04468999988756650676---88889999985-699788999999999999706823358989998999998648985
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 89999999999998770543311059
Q 000718 1027 MAVRKNAVLVLSHLILNDMMKVKGYI 1052 (1334)
Q Consensus 1027 ~~VR~~~l~vlthLil~dmiKvKg~l 1052 (1334)
+.||+.++..|..++.+.---+.+++
T Consensus 1020 ~~vr~~a~~~l~~~~~~~~~~~~~~l 1045 (1230)
T 1u6g_C 1020 LNVRRVALVTFNSAAHNKPSLIRDLL 1045 (1230)
T ss_dssp THHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 87999999999999842857689779
No 8
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=68.96 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=79.2
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999872797--45578999999999998872176442102446446499999999987098992051799999999974
Q 000718 328 GVLILHFGGE--SYKIRNALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERCRDVSAYTRSRVLQVWAELCE 405 (1334)
Q Consensus 328 s~L~~~Ld~e--sY~lRnaVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~~D~nayVRskvLQ~~~~L~e 405 (1334)
..+...+..+ +..+|.+.+.+++.++... . ...+. ... ++.++..|.+...|.+.-+|..+++++..+++
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~-~~~~~--~~~----~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~ 246 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFT-K-ANFDK--ESE----RHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-H-HHHTS--HHH----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH-H-HHHHH--HHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999861679998899999999999999999-9-98871--789----99999999987179988999999999999999
Q ss_pred CCC-CCHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 387-6532199-9999997330688246879899999999950
Q 000718 406 EHS-VSIGLWN-EVAEVAAGRLEDKSAIVRKSALNLLVMMLQH 446 (1334)
Q Consensus 406 ~~a-iPl~~~~-~v~~~av~RL~DKSs~VRK~AiqLL~~lL~~ 446 (1334)
... .-..+.. .++......+.|....||..|+.++..+...
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp HSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8699999887789999999996387349999999999999887
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=67.52 Aligned_cols=58 Identities=9% Similarity=0.009 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9896799999999973257-245443199999951288888867999999999984034
Q 000718 686 TPEKSRAALSVLCMAAKSS-AAVLGSHLQDIIDIGFGRWAKVEPLLARTACIAIQRLSQ 743 (1334)
Q Consensus 686 s~~~~r~Al~lL~Mia~~~-~~iv~~~ld~l~~iglg~~~~~D~~lar~~c~aL~~l~~ 743 (1334)
....|.+|+..|+.++... +..+...++.++...+......++.+-..+|.+|.++..
T Consensus 382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 382 NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 72699999999999985998788899899999999988289959999999999999998
No 10
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=1.00 E-value=1 Score=65.96 Aligned_cols=159 Identities=11% Similarity=0.028 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999983995159999999860098752357411141999999998430569984286999872797455789
Q 000718 264 VHMADAVAGAEKKYADGSLATYLIREIGRTNPKAYVKDTVGAENIGRFLVELADRLPKLISTNIGVLILHFGGESYKIRN 343 (1334)
Q Consensus 264 ~~~Ae~v~~l~~~~~~~~l~~~ilrEI~~~~~~~~~~D~~g~Kn~s~FL~~Lae~~P~lil~~is~L~~~Ld~esY~lRn 343 (1334)
..+..++..+...|+...+..++++-++.. |-.-=|-.-.++..+++..|.+++--++.+..-|.+++...|.
T Consensus 57 ~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~-------~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~ 129 (621)
T 2vgl_A 57 KYVCKLLFIFLLGHDIDFGHMEAVNLLSSN-------RYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMG 129 (621)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHGGGCS-------CHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 999999999980988861689999996489-------7899999999999983688289999999998765899898999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHC--CCCCHHHHHHHHH
Q ss_conf 999999999988721764421024464464999999999870--989920517999999999743--8765321999999
Q 000718 344 ALVGVLGKLVAKAFKDIEGEASSKSVRLRTKQAMLEILLERC--RDVSAYTRSRVLQVWAELCEE--HSVSIGLWNEVAE 419 (1334)
Q Consensus 344 aVvevlg~ii~~~l~~~~~~~~~k~~~~~~rd~lld~L~eR~--~D~nayVRskvLQ~~~~L~e~--~aiPl~~~~~v~~ 419 (1334)
..+.++|++... +. .+.++..+..-+ .|.++|||.+|.-++.+++.. ..+|.. .+..
T Consensus 130 lALr~L~~i~~~------------e~----~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~---~~~~ 190 (621)
T 2vgl_A 130 LALHCIANVGSR------------EM----AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMG---DWTS 190 (621)
T ss_dssp HHHHHHHHHCCH------------HH----HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCC---SCHH
T ss_pred HHHHHHHCCCCH------------HH----HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCH---HHHH
T ss_conf 999996655979------------99----9999999999981799977999999999999997491005712---3999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 99733068824687989999999995099
Q 000718 420 VAAGRLEDKSAIVRKSALNLLVMMLQHNP 448 (1334)
Q Consensus 420 ~av~RL~DKSs~VRK~AiqLL~~lL~~nP 448 (1334)
....-|.|+...|+-+|+.++..+...+|
T Consensus 191 ~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 191 RVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHCH
T ss_conf 99998479980299999999999999696
Done!