Query 000719
Match_columns 1333
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 15:53:02 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000719.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_492-496//hhsearch_pdb/000719hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dw9_A Cyanate lyase; cyanate 1.0 1 1 28.6 0.0 95 54-153 37-138 (156)
2 3sp1_A Cysteinyl-tRNA syntheta 1.0 1 1 16.7 0.6 20 1029-1048 256-275 (501)
3 3iac_A Glucuronate isomerase; 1.0 1 1 16.3 0.5 105 578-686 254-371 (473)
4 1g12_A Peptidyl-Lys metalloend 1.0 1 1 16.0 -0.6 48 1237-1285 52-102 (167)
5 3tou_A Glutathione S-transfera 1.0 1 1 15.5 0.5 37 782-818 178-216 (226)
6 3lsz_A Glutathione S-transfera 1.0 1 1 15.4 0.9 35 781-815 187-223 (225)
7 4e98_A CUTA1 divalent ION tole 1.0 1 1 15.0 -0.1 26 511-538 52-83 (138)
8 3gsd_A Divalent-cation toleran 1.0 1 1 14.9 -0.1 26 511-538 37-68 (122)
9 4dix_A Plectin-related protein 1.0 1 1 14.6 0.2 10 925-934 125-134 (230)
10 2i5o_A DNA polymerase ETA; zin 1.0 1 1 14.4 2.0 21 606-627 15-36 (39)
No 1
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=1.00 E-value=1 Score=28.57 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC-------CCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 78999998350479975057999999751888759998742123356765-------66358899999852002333213
Q 000719 54 ELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQ-------LHPAAYRLYLEFLTRHAFSFASL 126 (1333)
Q Consensus 54 ELA~iLVs~LCfdnn~Ps~WKfLe~AlssrLv~PLhvLALLSsRVIP~R~-------~qPeAYRLYLELL~r~aFs~~~~ 126 (1333)
++.++.++.+|.+.+.|+ +...++.-. -|=-|--.++.| .++|.|- .-|.-||+| |.+..|+-+++..
T Consensus 37 G~S~v~vtaa~lGQ~~ls-~e~A~kLa~-~LgL~~e~~~~l--~~~P~rg~~~~~~ptdP~iYR~y-E~v~vYG~~~K~l 111 (156)
T 1dw9_A 37 GLAEAFVTAALLGQQALP-ADAARLVGA-KLDLDEDSILLL--QMIPLRGCIDDRIPTDPTMYRFY-EMLQVYGTTLKAL 111 (156)
T ss_dssp SSCHHHHHHHHTTSSCCC-HHHHHHHHH-HTTCCHHHHHHT--TSBCCCCCCSSSSCCSHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCCCCC-HHHHHHHHH-HHCCCHHHHHHH--HCCCCCCCCCCCCCCCCEEHHHH-HHHHHHHHHHHHH
T ss_conf 969999999981789999-999999999-969399999998--46996788999899998102389-9998756899999
Q ss_pred CCCCCHHHHHHCHHHHHCCCCCCCCCC
Q ss_conf 579864577750898751001049854
Q 000719 127 VNGPNYDKIMNSIDDVLNLSQIFGLKV 153 (1333)
Q Consensus 127 i~~pn~~kimkSID~~L~LS~~~g~~~ 153 (1333)
|+-.-=|-||..||=-+.+.+.-+-.+
T Consensus 112 i~E~FGDGIMSAIdF~~~v~k~~dp~G 138 (156)
T 1dw9_A 112 VHEKFGDGIISAINFKLDVKKVADPEG 138 (156)
T ss_dssp HHHHTCSEEEEEEEEEEEEEEEECTTS
T ss_pred HHHHCCCCEEEEEEEEEEEEEECCCCC
T ss_conf 987707656766550046676218998
No 2
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=1.00 E-value=1 Score=16.70 Aligned_cols=20 Identities=0% Similarity=-0.012 Sum_probs=8.3
Q ss_pred EEEEECCCCCCCCHHHHHHH
Q ss_conf 89961235434471799999
Q 000719 1029 LVFSASGTVFHYNTDAVVQL 1048 (1333)
Q Consensus 1029 iV~S~srtvF~~n~dAV~QL 1048 (1333)
|-..+.--+|-|--+-+||.
T Consensus 256 IH~gG~DLifpHheneiAqs 275 (501)
T 3sp1_A 256 IHLGGVDHIGVHHINEIAIA 275 (501)
T ss_dssp EEEEEGGGTTTHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99304032566598899999
No 3
>3iac_A Glucuronate isomerase; IDP02065, structural genom center for structural genomics of infectious diseases, CSGI; 2.22A {Salmonella typhimurium} SCOP: c.1.9.0
Probab=1.00 E-value=1 Score=16.28 Aligned_cols=105 Identities=20% Similarity=0.236 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHCCC---CCHHHH--HH--HHHHCCCCCCCCCCHHHHH--HH----HHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8578899988777059---901112--26--4652145333443223579--99----9998439997788888832212
Q 000719 578 SSLAEIEKVYEIAVNG---SDDEKI--CA--ATVLCGASLVRGWSVQENT--IL----FIIKLLSPPVPADYSGSESHLI 644 (1333)
Q Consensus 578 sSlaElEKly~iA~~G---S~eEk~--aA--A~ILCGASL~RGWniQEH~--v~----~vvkLLSppvP~~~sg~~s~li 644 (1333)
-|-+|+|.+|.-|++| |++|.- .+ -.-|++-+.-+||-.|=|. .+ -+.+.+-|-...|.-+......
T Consensus 254 ~s~~e~~~if~k~l~G~~ls~~e~~~f~~~~l~~la~~~~e~gwvmQlH~Ga~Rn~n~~~f~~lG~D~G~D~~~d~~~~~ 333 (473)
T 3iac_A 254 PDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISW 333 (473)
T ss_dssp CCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECEECCCCHHHHHHHCSSSSCCEECCCCCHH
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCHHHHH
T ss_conf 99999999999997699989999999999999999999987797346532302588889999839989988899889999
Q ss_pred CHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 224589999843975440231000353156676543456551
Q 000719 645 GYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVF 686 (1333)
Q Consensus 645 ~~~pmLn~ll~GissvD~vhI~SlhGlvP~~Aa~LMPiCEvF 686 (1333)
...++||++ ..-+.+.-+-||-|=|.-...|-|+.-.|
T Consensus 334 ~L~~lLd~~----~~~~~LpktILy~Lnp~~n~~latlag~F 371 (473)
T 3iac_A 334 ALSRLLDSM----DVTNELPKTILYCLNPRDNEVLATMIGNF 371 (473)
T ss_dssp HHHHHHHHH----HTTTCCCEEEEEESSGGGHHHHHHHGGGS
T ss_pred HHHHHHHHC----CCCCCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999857----35699982467747834269999998316
No 4
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=48 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEECCCCHH--HHHHHHHHHHH-CCCCCCCCH
Q ss_conf 54037865799999860684240255112--56798866533-014444202
Q 000719 1237 KRPTVLGTHLEFLASALDRKISVGCDCAT--WRAYVSGFVTL-IVGCTPTWM 1285 (1333)
Q Consensus 1237 rR~~v~g~HleFlA~~ldg~IslgC~~~t--WraYvs~fv~L-mV~~~P~Wi 1285 (1333)
+|.+|.+ |++-+++.-+|.+.+.|+|.. |-|||..--.. ++-|..-|-
T Consensus 52 ~~~~V~~-~f~~i~~~~~~~~~~~C~C~~~~~~Ay~~p~~~~~i~~Cp~f~~ 102 (167)
T 1g12_A 52 RHSTVLQ-HYTDMNSNDFSSYSFDCTCTAAGTFAYVYPNRFGTVYLCGAFWK 102 (167)
T ss_dssp HHHHHHH-HHHHHHTSCGGGCEEECCCCCSSCCEECCTTSTTEEEECGGGGG
T ss_pred HHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCEEEEECCCCCEEEECCCHHC
T ss_conf 9999999-99999856688405860168998177884799976898982112
No 5
>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*
Probab=1.00 E-value=1 Score=15.48 Aligned_cols=37 Identities=8% Similarity=0.020 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHH--HHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 014430246888--4334689984204556970779999
Q 000719 782 FMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHLIVD 818 (1333)
Q Consensus 782 ~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pvhqv~~ 818 (1333)
..+.||+|+.|| ++....+..++....+.+|+.+--+
T Consensus 178 ~~~~~p~l~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~ 216 (226)
T 3tou_A 178 WREQHANLAAFYTRIEKRPSFLETQPQAENLYFQSHHHH 216 (226)
T ss_dssp HHHHCHHHHHHHHHHHTSHHHHTTCGGGGGCGGGCC---
T ss_pred HHHCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCC
T ss_conf 011196899999998649899973862443445302443
No 6
>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=15.42 Aligned_cols=35 Identities=14% Similarity=0.331 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHH--HHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 1014430246888--4334689984204556970779
Q 000719 781 IFMDSFPKLKRWY--RQNEECIASTLTGLVHGTSVHL 815 (1333)
Q Consensus 781 v~iDSFPKLk~WY--~Q~qaCiAStlSgl~~g~pvhq 815 (1333)
...+.||+|+.|| ++.+..+..++.....++|-|.
T Consensus 187 ~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 223 (225)
T 3lsz_A 187 ALLEPFPAVAAWLDRCQSRPAFRLMMERRAAEGHHHH 223 (225)
T ss_dssp TTTTTCHHHHHHHHHHHTSHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 8700091899999999759899999863424677656
No 7
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, signaling protein; 2.00A {Cryptosporidium parvum}
Probab=1.00 E-value=1 Score=15.03 Aligned_cols=26 Identities=27% Similarity=0.667 Sum_probs=18.9
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986301122--342002452236
Q 000719 511 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 538 (1333)
Q Consensus 511 mrHLIVE----aCIaRnLlD--tS~Y~WpGyv~~ 538 (1333)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 52 IA~~LVe~rLAACV--nI~p~i~SiY~WeG~Ie~ 83 (138)
T 4e98_A 52 IAKTLVDEELCACV--SIIPSVRSIYKFKGQVHD 83 (138)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999977924699--815992199996892628
No 8
>3gsd_A Divalent-cation tolerance protein CUTA; IDP00456, metal-BIN structural genomics, center for structural genomics of INFE diseases, csgid; HET: EPE; 2.05A {Yersinia pestis CO92} SCOP: d.58.5.2
Probab=1.00 E-value=1 Score=14.88 Aligned_cols=26 Identities=35% Similarity=0.778 Sum_probs=19.2
Q ss_pred HHHHHHH----HHHHHCCCC--CCCEECCCCCCC
Q ss_conf 1378999----986301122--342002452236
Q 000719 511 MRHLIVE----ACIARNLLD--TSAYLWPGYVNA 538 (1333)
Q Consensus 511 mrHLIVE----aCIaRnLlD--tS~Y~WpGyv~~ 538 (1333)
+-+.+|| ||+ |++. +|.|.|-|-+..
T Consensus 37 iA~~Lve~rLAACV--ni~p~i~S~Y~W~G~ie~ 68 (122)
T 3gsd_A 37 LAAQVLGEKLAACV--TLLPGATSLYYWEGKLEQ 68 (122)
T ss_dssp HHHHHHHTTSCSEE--EEEEEEEEEEEETTEEEE
T ss_pred HHHHHHHCCCEEEE--EECCCEEEEEEECCEEEE
T ss_conf 99999978926799--825994699998999867
No 9
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=1.00 E-value=1 Score=14.57 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q ss_conf 4798999934
Q 000719 925 MNGTDWPSPA 934 (1333)
Q Consensus 925 MNGtDWPSPa 934 (1333)
|||.||||++
T Consensus 125 ~nG~d~~s~s 134 (230)
T 4dix_A 125 MSGEDHTSES 134 (230)
T ss_dssp ETTEECCCCC
T ss_pred ECCCCCCCCE
T ss_conf 7576576631
No 10
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=14.39 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 145333443223579-9999984
Q 000719 606 CGASLVRGWSVQENT-ILFIIKL 627 (1333)
Q Consensus 606 CGASL~RGWniQEH~-v~~vvkL 627 (1333)
||..+-- |..|||. -||..+|
T Consensus 15 C~~~i~~-~~~~EH~D~H~A~~L 36 (39)
T 2i5o_A 15 CGSLVPV-WDMPEHMDYHFALEL 36 (39)
T ss_dssp TCCEEEG-GGHHHHHHHHHHHHH
T ss_pred CCCCCCC-CCCCCHHHHHHHHHH
T ss_conf 4683775-321320007999987
Done!